HHSEARCH alignment of GI: 254780345 and SCOP domain: d1eyva_

Alignment
>d1eyva_ a.79.1.1 (A:) Antitermination factor NusB {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=99.97  E-value=6.8e-32  Score=209.11  Aligned_cols=129  Identities=30%  Similarity=0.468  Sum_probs=118.0

Q ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             46999999999999995699989999999985310013221120144343999999999999989999999997410357
Q gi|254780345|r   16 RGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKW   95 (170)
Q Consensus        16 r~~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w   95 (170)
                      |+.||+.|+|+||++++++.+++++++++.....        .......|..|+++++.|+.++...+|.+|.+++ ++|
T Consensus         2 R~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~gv~~~~~~id~~I~~~l-~~~   72 (131)
T d1eyva_           2 RHQARKRAVALLFEAEVRGISAAEVVDTRAALAE--------AKPDIARLHPYTAAVARGVSEHAAHIDDLITAHL-RGW   72 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH--------HCTTSCCCCHHHHHHHHHHHHTHHHHHHHHHTTS-TTC
T ss_pred             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf             3799999999999998529499999999999876--------4000378999999999999995999999999860-124


Q ss_pred             CHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf             6332353489999999999864355781033988999999833877231499999999
Q gi|254780345|r   96 SFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKV  153 (170)
Q Consensus        96 ~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki  153 (170)
                      +++++++++++|||+|+||+++++++|.+++|||||+|||.|++++++||||||||++
T Consensus        73 ~~~~l~~i~~~iLr~a~~El~~~~~~p~~viInE~V~lak~~~~~~~~kfiNaVL~ki  130 (131)
T d1eyva_          73 TLDRLPAVDRAILRVSVWELLHAADVPEPVVVDEAVQLAKELSTDDSPGFVNGVLGQV  130 (131)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHC
T ss_conf             7877539999999999999986456995157899999999968986432369987742


SCOP domain information

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Mycobacterium tuberculosis [TaxId: 1773]