HHSEARCH alignment of GI: 254780345 and SCOP domain: d1sqga1

Alignment

Probab=99.94  E-value=2.6e-26  Score=175.44  Aligned_cols=126  Identities=21%  Similarity=0.240  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf             99999999999999569998999999998531001322112014434399999999999998999999999741035763
Q gi|254780345|r   18 IARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSF   97 (170)
Q Consensus        18 ~aR~~aiq~Ly~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~l~~~w~~   97 (170)
                      .+|..|+|+||++...|.++++++..+.+             .+++.|+.|+++|++|++++...+|.+|++++.++  +
T Consensus         2 ~~R~~A~q~L~~v~~~g~~l~~~l~~~~~-------------~l~~~dr~~~~~lv~gvlr~~~~ld~~i~~~l~~~--~   66 (140)
T d1sqga1           2 NLRSMAAQAVEQVVEQGQSLSNILPPLQQ-------------KVSDKDKALLQELCFGVLRTLSQLDWLINKLMARP--M   66 (140)
T ss_dssp             CHHHHHHHHHHHHHHHCCCHHHHHHHHHT-------------TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSC--C
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHH-------------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C
T ss_conf             79999999999999819989999999998-------------59888899999999999986999999999872301--1


Q ss_pred             HHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             32353489999999999864355781033988999999833877231499999999952333
Q gi|254780345|r   98 SRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEI  159 (170)
Q Consensus        98 ~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~  159 (170)
                      +++++++++|||+|+||+++. ++|++++|||||++||.|++++++||||||||++.|+.+.
T Consensus        67 ~~~~~~~~~iLr~a~~el~~~-~~p~~avvneaV~lak~~~~~~~~~fVNaVLr~~~r~~~~  127 (140)
T d1sqga1          67 TGKQRTVHYLIMVGLYQLLYT-RIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQEE  127 (140)
T ss_dssp             CGGGHHHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHH
T ss_conf             010099999999999999707-9998001699999999858876442059998999867087

SCOP domain information

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: RmsB N-terminal domain-like
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), N-terminal domain
species: Escherichia coli [TaxId: 562]