HHSEARCH alignment of GI: 254780345 and SCOP domain: d1tzva_

Alignment

Probab=100.00  E-value=2.5e-33  Score=217.80  Aligned_cols=137  Identities=31%  Similarity=0.456  Sum_probs=120.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1323469999999999999956999-899999999853100132211201443439999999999999899999999974
Q gi|254780345|r   12 LSHRRGIARLAAVQALYQIDIIGCS-TTEIISEYETYRFCADTELDVESVYLHVDLEWFRVIIHGVMDRKQHIDLLISSC   90 (170)
Q Consensus        12 ~~~~r~~aR~~aiq~Ly~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~d~~~~~~lv~~v~~~~~~id~~I~~~   90 (170)
                      |..+|+.||+.|+|+||++++++.. .+.+...+.            .......|+.|+++++.|+.++...+|.+|.++
T Consensus         1 Mk~pR~~aR~~a~q~Ly~~~~~~~~~~~~~~~~~~------------~~~~~~~d~~~~~~lv~g~~~~~~~id~~I~~~   68 (141)
T d1tzva_           1 MKTPRRRMRLAVFKALFQHEFRRDEDLEQILEEIL------------DETYDKKAKEDARRYIRGIKENLSMIDDLISRY   68 (141)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHC------------CTTSCHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99816999999999999998449962999999998------------841366679999999999998099999999985


Q ss_pred             HCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             10357633235348999999999986435578103398899999983387723149999999995233320
Q gi|254780345|r   91 LTEKWSFSRLDMILCSILRAGVLELIECHSVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRKEEIKR  161 (170)
Q Consensus        91 l~~~w~~~rl~~~~~~iLr~a~~El~~~~~~p~~vvInE~V~lak~f~~~~~~~fVNaVL~ki~k~~~~~~  161 (170)
                      + ++|+++|+++++++|||+|+||+++++++|++|+|||||+|||.|++++++||||||||+++|+.+..+
T Consensus        69 ~-~~~~~~rl~~~~~~iLr~a~~El~~~~~~p~~v~InEaVelak~~~~~~~~~fVNaVL~~i~r~~~~~e  138 (141)
T d1tzva_          69 L-EKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKFVNGILDRIAKEHAPKE  138 (141)
T ss_dssp             C-SSSCGGGSCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHCCGG
T ss_pred             C-CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf             2-158738888899999999999998533330358999999999985888632118999999998757511

SCOP domain information

class: All alpha proteins
fold: NusB-like
superfamily: NusB-like
family: Antitermination factor NusB
domain: Antitermination factor NusB
species: Thermotoga maritima [TaxId: 2336]