BLAST/PSIBLAST alignment of GI: 254780345 and GI: 163759209 at iteration 1
>gi|163759209|ref|ZP_02166295.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] Length = 164
>gi|162283613|gb|EDQ33898.1| transcription antitermination protein NusB [Hoeflea phototrophica DFL-43] Length = 164
 Score =  153 bits (386), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/167 (46%), Positives = 108/167 (64%), Gaps = 7/167 (4%)

Query: 1   MTIQDNKKD-LKLSHRRGIARLAAVQALYQIDIIGCSTTEIISEYETYRFCADTELDVES 59
           MT + N +  +K +++RG ARLAAVQALYQ+DI G    E+++EYE +R     E+D E 
Sbjct: 1   MTTEQNPEPAVKTANQRGAARLAAVQALYQMDIGGAGVLEVVAEYEAHRLG--HEIDGEQ 58

Query: 60  VYLHVDLEWFRVIIHGVMDRKQHIDLLISSCLTEKWSFSRLDMILCSILRAGVLELIECH 119
            Y   D  WF+ ++ GV++ ++ +D +I S LTE W  SRLD  L +ILRAG  EL    
Sbjct: 59  -YRPADAAWFKAVVSGVVENQRALDPVIRSSLTEDWPLSRLDATLRAILRAGAWELSSKK 117

Query: 120 SVPVEVIISEYVCIAHDFFYGDEPKFINAVLDKVSRK---EEIKRSG 163
            VPV VI++EYV +A  FF  DEPK +NAVLD+++RK   E+  + G
Sbjct: 118 DVPVAVIVTEYVDVARAFFEEDEPKIVNAVLDRLARKYRAEQTPKQG 164