HHsearch alignment for GI: 254780346 and conserved domain: COG1731
>COG1731 Archaeal riboflavin synthase [Coenzyme metabolism].
Probab=97.79 E-value=0.00021 Score=48.28 Aligned_cols=129 Identities=19% Similarity=0.210 Sum_probs=87.7
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHC--CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf 871799980312899999999999999987--995555530014422699999986331137853566541200066524
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSR--AVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~--~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149)
T Consensus 1 ~~kvGiaDTTFaR---vdMg~vai~~lk~~~~~~~i~R~TVPGIKdlpvaakrLiee----eGCd~Vi~lG~~--G~t~~ 71 (154)
T COG1731 1 MTKVGIADTTFAR---VDMGSVAIDELKKLLPGIKIKRYTVPGIKDLPVAAKRLIEE----EGCDIVIALGWV--GPTEK 71 (154)
T ss_pred CCEEEEECCCEEE---ECCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHH----CCCCEEEECCCC--CCCHH
T ss_conf 9625541350123---20147799999963899834886279844375899998876----188489983676--85014
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 6789999999999999743997056542558899999950656574569999999999999
Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIEL 143 (149)
Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l 143 (149)
T Consensus 72 Dk~~~~~aS~GLi~~QlmTn~hiidV~VHE-DEa~dekeL~~la~~RareHa~Nlv~ll~~ 131 (154)
T COG1731 72 DKYSYLAASIGLIMAQLMTNKHIIDVTVHE-DEAEDEKELKELAVDRAREHAENLVKLLFK 131 (154)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 579999985689999998087489999604-454798999999999999999999999868