HHsearch alignment for GI: 254780346 and conserved domain: PRK00061
>PRK00061 ribH riboflavin synthase subunit beta; Provisional.
Probab=100.00 E-value=0 Score=344.69 Aligned_cols=144 Identities=33% Similarity=0.561 Sum_probs=135.9
Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf 9665871799980312899999999999999987995---5555300144226999999863311378535665412000
Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149)
Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149)
T Consensus 8 ~~~~~~rI~IV~s~~n~~It~~L~~ga~~~L~~~g~~~~~i~~~~VPGa~EiP~a~~~l~~----~~~~DavIalG~VIk 83 (154)
T PRK00061 8 LDAKGLRIGIVVARFNDFITDALLEGAIDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE----SGKYDAVIALGAVIR 83 (154)
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEEE
T ss_conf 2688989999980385899999999999999985999312699987968889999999986----399887999999981
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 66524678999999999999974399705654255889999995065657456999999999999998636
Q gi|254780346|r 78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149)
Q Consensus 78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149)
T Consensus 84 GeT~H~d~I~~~v~~gl~~lsl~~~~PI~~GVLT~~n~~QA~~Ra~~~~~nkG~eaA~aal~Mi~l~~~l~ 154 (154)
T PRK00061 84 GETPHFEYVANEVAKGLADVSLETGVPVAFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKALK 154 (154)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 89746899999999999999835798179985578998999998089877857999999999999999609