HHsearch alignment for GI: 254780346 and conserved domain: PRK00061

>PRK00061 ribH riboflavin synthase subunit beta; Provisional.
Probab=100.00  E-value=0  Score=344.69  Aligned_cols=144  Identities=33%  Similarity=0.561  Sum_probs=135.9

Q ss_pred             CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC
Q ss_conf             9665871799980312899999999999999987995---5555300144226999999863311378535665412000
Q gi|254780346|r    1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR   77 (149)
Q Consensus         1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk   77 (149)
T Consensus         8 ~~~~~~rI~IV~s~~n~~It~~L~~ga~~~L~~~g~~~~~i~~~~VPGa~EiP~a~~~l~~----~~~~DavIalG~VIk   83 (154)
T PRK00061          8 LDAKGLRIGIVVARFNDFITDALLEGAIDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAE----SGKYDAVIALGAVIR   83 (154)
T ss_pred             CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEEE
T ss_conf             2688989999980385899999999999999985999312699987968889999999986----399887999999981


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf             66524678999999999999974399705654255889999995065657456999999999999998636
Q gi|254780346|r   78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS  148 (149)
Q Consensus        78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~  148 (149)
T Consensus        84 GeT~H~d~I~~~v~~gl~~lsl~~~~PI~~GVLT~~n~~QA~~Ra~~~~~nkG~eaA~aal~Mi~l~~~l~  154 (154)
T PRK00061         84 GETPHFEYVANEVAKGLADVSLETGVPVAFGVLTTDTIEQAIERAGTKAGNKGAEAALAALEMANLLKALK  154 (154)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             89746899999999999999835798179985578998999998089877857999999999999999609