HHsearch alignment for GI: 254780346 and conserved domain: PRK09526

>PRK09526 lacI lac repressor; Reviewed.
Probab=92.49  E-value=1  Score=25.53  Aligned_cols=125  Identities=11%  Similarity=0.136  Sum_probs=72.9

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf             87179998031289999999999999998799555553001442269999998633113785356654120006652467
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD   84 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e   84 (149)
T Consensus       181 hr~I~~i~~~~~~~~~~~R~~Gf~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ptai~~~----------~D  249 (342)
T PRK09526        181 HQQIALLAGPLSSVSARLRLAGWLEYLTRNQLSPIAV-REGDWSAMSGYQQTLQMLNEGPVFTAVLVA----------ND  249 (342)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE-EECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CH
T ss_conf             9759999589766009999999999999779896169-956898789999999998369999758756----------77


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             89999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r   85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       250 ~~A~g~i~~l~~~--g~~vP~DisIigfDd~~~~~~~~P~LTtv~~p~~~ig~~A~~~Ll~~i~  311 (342)
T PRK09526        250 QMALGVLRALHES--GLRVPGDISVIGYDDTEDSSYFIPPLTTIKQDFRLLGKEAVDRLLSLSD  311 (342)
T ss_pred             HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf             9999999999980--9999997499998980899824898089981999999999999999865