HHsearch alignment for GI: 254780346 and conserved domain: PRK09526
>PRK09526 lacI lac repressor; Reviewed.
Probab=92.49 E-value=1 Score=25.53 Aligned_cols=125 Identities=11% Similarity=0.136 Sum_probs=72.9
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149)
T Consensus 181 hr~I~~i~~~~~~~~~~~R~~Gf~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~ptai~~~----------~D 249 (342)
T PRK09526 181 HQQIALLAGPLSSVSARLRLAGWLEYLTRNQLSPIAV-REGDWSAMSGYQQTLQMLNEGPVFTAVLVA----------ND 249 (342)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEE-EECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CH
T ss_conf 9759999589766009999999999999779896169-956898789999999998369999758756----------77
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 250 ~~A~g~i~~l~~~--g~~vP~DisIigfDd~~~~~~~~P~LTtv~~p~~~ig~~A~~~Ll~~i~ 311 (342)
T PRK09526 250 QMALGVLRALHES--GLRVPGDISVIGYDDTEDSSYFIPPLTTIKQDFRLLGKEAVDRLLSLSD 311 (342)
T ss_pred HHHHHHHHHHHHH--CCCCCCCEEEEEECCCHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 9999999999980--9999997499998980899824898089981999999999999999865