HHsearch alignment for GI: 254780346 and conserved domain: PRK10014
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional.
Probab=95.20 E-value=0.3 Score=28.76 Aligned_cols=128 Identities=12% Similarity=0.024 Sum_probs=78.2
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf 87179998031289999999999999998799555553-00144226999999863311378535665412000665246
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149)
T Consensus 182 hr~Ia~i~~~~~~~~~~~R~~gf~~al~~~~l~~~~~~i~~~~~~~~~~~~~~~~ll~~~~~~tAi~c----------~~ 251 (342)
T PRK10014 182 HQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSEWVLECTSSQKQAAEAITALLRHNPTISAVVC----------YN 251 (342)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEE----------EC
T ss_conf 98699995788863399999999999997699988334896689789999999999836999718999----------67
Q ss_pred HHHHHHHHHHHHHHHHHCC-------CCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 7899999999999997439-------97056542558899999950------65657456999999999999
Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGS-------LPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 84 e~I~~~v~~gl~~lsl~~~-------~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 252 D~~A~g~~~~l~~~g~~v~~d~~~~~ip~~vsIigfdd~~~~~~~~P~LTtv~~~~~~ig~~a~~~Ll~~i~ 323 (342)
T PRK10014 252 ETIAMGAWFGLLRAGRQSGESGVDRYFEQQVALAAFTDVPEAELDDPPLTWASTPAREIGRTLADRMMQRIT 323 (342)
T ss_pred HHHHHHHHHHHHHHCHHCCCCCCCCCCCCCEEEEEECCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 899999999999958221755333478985899998884888625898569983999999999999999966