HHsearch alignment for GI: 254780346 and conserved domain: PRK10339
>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional.
Probab=90.69 E-value=1.6 Score=24.35 Aligned_cols=125 Identities=12% Similarity=0.028 Sum_probs=72.7
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf 871799980312899999999999999987995-5555300144226999999863311378535665412000665246
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ-WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~-~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149)
T Consensus 174 ~r~I~~i~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~i~-~~~~~~~~g~~~~~~ll~~~~~p~ai~~~----------n 242 (327)
T PRK10339 174 VNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIW-RGGFSSSSGYELAKQMLAREDYPKALFVA----------S 242 (327)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEE-ECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C
T ss_conf 983999957887644999999999999875999737558-66898699999999998469999748977----------7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH
Q ss_conf 7899999999999997439970565425588999999506------5657456999999999999
Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 243 D~~A~g~l~al~~~g--i~VP~DisVigfdd~~~~~~~~P~LTtv~~~~~~~g~~Av~~Ll~~i~ 305 (327)
T PRK10339 243 DSIAIGVLRAIHERG--LNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLYEKAR 305 (327)
T ss_pred HHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 799999999999829--999997599998973889833899569986999999999999999973