HHsearch alignment for GI: 254780346 and conserved domain: PRK10339

>PRK10339 DNA-binding transcriptional repressor EbgR; Provisional.
Probab=90.69  E-value=1.6  Score=24.35  Aligned_cols=125  Identities=12%  Similarity=0.028  Sum_probs=72.7

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             871799980312899999999999999987995-5555300144226999999863311378535665412000665246
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ-WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~-~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
T Consensus       174 ~r~I~~i~~~~~~~~~~~R~~~~~~~~~~~~~~~~~~i~-~~~~~~~~g~~~~~~ll~~~~~p~ai~~~----------n  242 (327)
T PRK10339        174 VNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIW-RGGFSSSSGYELAKQMLAREDYPKALFVA----------S  242 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHEE-ECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C
T ss_conf             983999957887644999999999999875999737558-66898699999999998469999748977----------7


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH
Q ss_conf             7899999999999997439970565425588999999506------5657456999999999999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       243 D~~A~g~l~al~~~g--i~VP~DisVigfdd~~~~~~~~P~LTtv~~~~~~~g~~Av~~Ll~~i~  305 (327)
T PRK10339        243 DSIAIGVLRAIHERG--LNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLYEKAR  305 (327)
T ss_pred             HHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             799999999999829--999997599998973889833899569986999999999999999973