HHsearch alignment for GI: 254780346 and conserved domain: cd06267
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=95.41 E-value=0.23 Score=29.54 Aligned_cols=126 Identities=17% Similarity=0.103 Sum_probs=76.2
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf 8717999803128999999999999999879955555-300144226999999863311378535665412000665246
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149)
T Consensus 116 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~ 185 (264)
T cd06267 116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA----------N 185 (264)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C
T ss_conf 885689638987706999999999999986999885307527897799999999999659999899878----------8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 789999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149)
T Consensus 186 D~~A~g~~~~l~~~g--~~iP~di~Iig~d~~~~~~~~~p~lttv~~~~~~ig~~a~~~l~~~i~ 248 (264)
T cd06267 186 DLMAIGALRALRELG--LRVPEDVSVVGFDDIPLAELLTPPLTTVRQPIEEMGRAAAELLLERIE 248 (264)
T ss_pred HHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf 799999999999829--999997799999984898534899479990999999999999999965