HHsearch alignment for GI: 254780346 and conserved domain: cd06267

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=95.41  E-value=0.23  Score=29.54  Aligned_cols=126  Identities=17%  Similarity=0.103  Sum_probs=76.2

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             8717999803128999999999999999879955555-300144226999999863311378535665412000665246
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
T Consensus       116 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~  185 (264)
T cd06267         116 HRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDFSEESGYEAARELLASGERPTAIFAA----------N  185 (264)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C
T ss_conf             885689638987706999999999999986999885307527897799999999999659999899878----------8


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf             789999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       186 D~~A~g~~~~l~~~g--~~iP~di~Iig~d~~~~~~~~~p~lttv~~~~~~ig~~a~~~l~~~i~  248 (264)
T cd06267         186 DLMAIGALRALRELG--LRVPEDVSVVGFDDIPLAELLTPPLTTVRQPIEEMGRAAAELLLERIE  248 (264)
T ss_pred             HHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf             799999999999829--999997799999984898534899479990999999999999999965