>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

Probab=92.48 E-value=1 Score=25.53 Aligned_cols=125 Identities=15% Similarity=0.088 Sum_probs=69.0 Q ss_pred CEEEEEEEC-HHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 717999803-1289999999999999998799555553-00144226999999863311378535665412000665246 Q gi|254780346|r 6 PHVLIIEAR-FYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 6 ~kI~IV~s~-~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) T Consensus 117 ~~i~~i~~~~~~~~~~~~R~~gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------n 186 (268) T cd06273 117 RRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPYSIADGRAALRQLLEQPPRPTAVICG----------N 186 (268) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C T ss_conf 747999468777778999999999999980999871420315789899999999998479998489977----------8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 789999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) T Consensus 187 d~~A~g~i~~l~~~g--~~iP~disvigfd~~~~~~~~~p~lTti~~~~~~~g~~a~~~L~~~i~ 249 (268) T cd06273 187 DVLALGALYEARRLG--LSVPEDLSIVGFDDIDGSAELEPALTTVRVPAREIGRIAAEALLALLG 249 (268) T ss_pred HHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf 799999999999639--999996799999982889841899479991999999999999999966

HHsearch alignment for GI: 254780346 and conserved domain: cd06273