HHsearch alignment for GI: 254780346 and conserved domain: cd06274

>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=91.92  E-value=1.2  Score=25.11  Aligned_cols=124  Identities=13%  Similarity=-0.039  Sum_probs=78.3

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHH---HHHHHHHHCCCCCCEEEEEEEEECCCC
Q ss_conf             87179998031289999999999999998799555553-00144226999---999863311378535665412000665
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVLEIPAAV---SMVMNAKTRSVTYDGIIVLGVVMRGKT   80 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~EiP~a~---~~~~~~~~~~~~~D~vIaLG~VIkGeT   80 (149)
T Consensus       116 hr~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~i~~~~~~~~~g~~~~~~~l~~--~~~~p~ai~~~--------  185 (264)
T cd06274         116 PEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEGYSPESGYQLMAELLAR--LGRLPRALFTT--------  185 (264)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHH--CCCCCCCCCCC--------
T ss_conf             96699976898773099999999999997799877407982688878999999999986--56887422017--------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH
Q ss_conf             2467899999999999997439970565425588999999506------5657456999999999999
Q gi|254780346|r   81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~  142 (149)
T Consensus       186 --nd~~a~g~l~~l~~~g~--~vP~disvvgfDd~~~a~~~~p~LTtv~q~~~~~g~~A~~lLl~~i~  249 (264)
T cd06274         186 --SYTLLEGVLRFLRERPG--LAPSDLRIATFDDHPLLDFLPFPVHSVPQDHEALAEAAFELALAALG  249 (264)
T ss_pred             --CHHHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf             --69999999999998599--99998799998986899737999769967999999999999999867