>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription

Probab=96.57 E-value=0.05 Score=33.61 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=82.5 Q ss_pred CCEEEEEEECHHHHH-HHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 871799980312899-9999999999999879955555300144226999999863311378535665412000665246 Q gi|254780346|r 5 IPHVLIIEARFYENL-SAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 5 ~~kI~IV~s~~~~~i-~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) T Consensus 112 hr~I~~i~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ai~~~----------n 181 (265) T cd06291 112 CKHIAHIGGPNNTVSPTNLRYEGFLDVLKENGLEVRIIEIQENFDDAEKKEEIKELLEEYPDIDGIFAS----------N 181 (265) T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEECC----------C T ss_conf 964999966888874899999999999997699960899768898699999999998559998843216----------6 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH Q ss_conf 7899999999999997439970565425588999999506------5657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149) T Consensus 182 D~~A~g~~~al~~~g~--~vP~disvigfDd~~~~~~~~p~LTtv~~~~~~~g~~A~~~Ll~~i~ 244 (265) T cd06291 182 DLTAILVLKEAQQRGI--RVPEDLQIIGYDGTKLTRLYTPELTTIRQPIEEIAKTAVDLLIKQIE 244 (265) T ss_pred HHHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC T ss_conf 8999999999998199--99998699998880999843999559973999999999999999965

HHsearch alignment for GI: 254780346 and conserved domain: cd06291