>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

Probab=91.57 E-value=1.3 Score=24.88 Aligned_cols=121 Identities=12% Similarity=0.010 Sum_probs=74.7 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHH---HHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 8717999803128999999999999999879955555-300144226999---999863311378535665412000665 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAV---SMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~---~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) T Consensus 116 ~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l-----~~~p~ai~~~-------- 182 (265) T cd06299 116 HKKIGYISGPQDTSTGRERLEAFRQACASLGLEVNEDLVVLGGYSQESGYAGATKLL-----DQGATAIIAG-------- 182 (265) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHH-----HCCCCEEECC-------- T ss_conf 983886048988756999999999999976999993059984035578999999999-----6399854506-------- Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH Q ss_conf 2467899999999999997439970565425588999999506------5657456999999999999 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149) T Consensus 183 --nD~~A~g~~~~l~~~--g~~vP~dvsvvgfd~~~~~~~~~p~lTTv~~~~~~~g~~A~~~L~~~i~ 246 (265) T cd06299 183 --DSMMTIGAIRAIHDA--GLVIGEDISLIGFDDLPVFRLQTPPLTVIDQQVEQMGKRAVDMLLSLIA 246 (265) T ss_pred --CCHHHHHHHHHHHHH--CCCCCCCEEEEEECCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf --858899999999983--8999993499999975889853998399980999999999999999962

HHsearch alignment for GI: 254780346 and conserved domain: cd06299