>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

Probab=94.33 E-value=0.34 Score=28.48 Aligned_cols=116 Identities=10% Similarity=0.088 Sum_probs=77.6 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) T Consensus 131 ~k~igvlyn~~e~-ns~~~~~~~~~~a~~~Gi~v~~~~v~~~~ei~~a~~~l~------~~~Dal~~~-------~d~-- 194 (281) T cd06325 131 AKTVGVLYNPSEA-NSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLA------GKVDAIYVP-------TDN-- 194 (281) T ss_pred CCEEEEEECCCCC-CHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHH------HCCCEEEEE-------CCC-- T ss_conf 8589999579986-569999999999997698899994598889999999756------258999991-------881-- Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH----CCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999999743997056542558899999950----65657456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV----SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~----~~~~~nkG~eaa~Aal~mi~ 142 (149) T Consensus 195 ~v~-s~~~~i~~~a~~~~iPv~~~-----~~~~v~~G~L~s~g~~~~~~G~~aa~~a~rIL~ 250 (281) T cd06325 195 TVA-SAMEAVVKVANEAKIPVIAS-----DDDMVKRGGLATYGIDYYELGRQTGKMAAKILK 250 (281) T ss_pred HHH-HHHHHHHHHHHHCCCCEEEC-----CHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHC T ss_conf 277-79999999998749988936-----778861672799827899999999999999978

HHsearch alignment for GI: 254780346 and conserved domain: cd06325