HHsearch alignment for GI: 254780346 and conserved domain: pfam00532

>pfam00532 Peripla_BP_1 family. This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (pfam00356).

Probab=92.16  E-value=1.1  Score=25.29  Aligned_cols=33  Identities=6%  Similarity=0.038  Sum_probs=16.0

Q ss_pred             EEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf             799980312899999999999999987995555
Q gi|254780346|r    8 VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS   40 (149)
Q Consensus         8 I~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~   40 (149)
T Consensus       124 i~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~  156 (281)
T pfam00532       124 IAVMAGPASALTARERVQGFMAALAAAGREVKI  156 (281)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             477307876507899999999999975999982