HHsearch alignment of GI: 254780346 and MMDB domain: 1dbq_A_1-109_242-289

>1dbq_A (A:1-109,A:242-289) Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli}
Probab=95.23  E-value=0.18  Score=29.84  Aligned_cols=120  Identities=14%  Similarity=-0.012  Sum_probs=74.9

Q ss_pred             CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf             5871799980312899999999999999987995555530014422-699999986331137853566541200066524
Q gi|254780346|r    4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEI-PAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH   82 (149)
Q Consensus         4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~Ei-P~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H   82 (149)
                      ...+|+++...+....-..+++|..+.+.+.|+........+..|- ...++.+.     ..++||+|.+++-...+   
T Consensus         6 ~s~~Igviip~~~~~f~~~~~~gi~~~a~~~g~~v~i~~~~~~~~~~~~~i~~l~-----~~~vDGiIi~~~~~~~~---   77 (157)
T 1dbq_A            6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-----QKRVDGLLVMCSEYPEP---   77 (157)
T ss_dssp             --CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEEECSCCCHH---
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEECCCCCCHH---
T ss_conf             9997999959998989999999999999986999999968999899999999988-----45876688426556505---


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             678999999999999974399705654255889999995065657456999999999999
Q gi|254780346|r   83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~  142 (149)
                                .+.+..-+.++|+..-=-..++.....--+ .+...-|+.|++.++++++
T Consensus        78 ----------~~~~~l~~~~iPvV~id~~~~~~~~~~V~~-Dn~~~~~~~a~~~l~~~i~  126 (157)
T 1dbq_A           78 ----------LLAMLEEYRHIPMVVMDWGEAKADFTDAVI-DNKDSLGETAFNMLLDRIV  126 (157)
T ss_dssp             ----------HHHHHHHTTTSCEEEEECSSCCSSSCEEEE-ECSHHHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHCCCCEEEEEECCCCCCCCEEEE-ECHHHHHHHHHHHHHHHHC
T ss_conf             ----------789998606996899850368899884997-0799999999999999970