HHsearch alignment of GI: 254780346 and MMDB domain: 2dri_A_1-104_237-271

>2dri_A (A:1-104,A:237-271) D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli}
Probab=94.91  E-value=0.32  Score=28.26  Aligned_cols=109  Identities=8%  Similarity=0.054  Sum_probs=69.7

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             8717999803128999999999999999879955555300144226-999999863311378535665412000665246
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
                      +.+|+++..+........+++|+.+.++++|++.........-+-= -.++.+     ...++||+|..++--...+++.
T Consensus         1 K~tIgvi~~~~~~~f~~~i~~gi~~~a~~~G~~l~i~~~~~~~~~~~~~i~~l-----i~~~vdgiIi~~~~~~~~~~~l   75 (139)
T 2dri_A            1 KDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-----TVRGTKILLINPTDSDAVGNAV   75 (139)
T ss_dssp             CCEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-----TTTTEEEEEECCSSTTTTHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCCCCCCCCCCCCCHHHH
T ss_conf             98899992889898999999999999998599899995899999999999999-----8618764432122222316899


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEE-----------EECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf             7899999999999997439970565-----------4255889999995065657456999999999999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGSLPIGNG-----------IVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE  142 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~~PI~~g-----------ILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~  142 (149)
                                  +...+.++|+++-           +.+.+..+            -|..|.++|.+|++
T Consensus        76 ------------~~l~~~gIPvV~id~~~~~~~~~~~v~~d~~~------------~~~~~~~~~~~~~~  121 (139)
T 2dri_A           76 ------------KMANQANIPVITLDRQATKGEVVSHIASDPDQ------------IGAKGVETADKVLK  121 (139)
T ss_dssp             ------------HHHHHTTCCEEEESSCCSSSCCSEEEEECHHH------------HHHHHHHHHHHHHT
T ss_pred             ------------HHHHHCCCCCCCCCCCCCCCCCCEEEEECHHH------------HHHHHHHHHHHHHC
T ss_conf             ------------99986377532356555545542378522999------------99999999999977