HHsearch alignment of GI: 254780346 and MMDB domain: 2fep_A_1-116_250-289
>2fep_A (A:1-116,A:250-289) Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=94.90 E-value=0.23 Score=29.15 Aligned_cols=118 Identities=16% Similarity=0.102 Sum_probs=77.4
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEECCCCCH
Q ss_conf 5871799980312899999999999999987995555530014422699-999986331137853566541200066524
Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149)
Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149)
....|+++...+.......+++|..+.+.++|+..-.+...+..+.... ++.+ .+.++||+|..+.-..
T Consensus 15 ~s~~Igvi~~~~~~~~~~~i~~~i~~~~~~~g~~~~i~~~~~~~~~~~~~i~~~-----~~~~vdGiIi~~~~~~----- 84 (156)
T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTM-----LGKQVDGIVFMGGNIT----- 84 (156)
T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-----HHTTCSEEEECCSCCC-----
T ss_pred HHCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCCCEEECCCCC-----
T ss_conf 359999996888798999999999999998699899997899979999999999-----8559874011001343-----
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHH
Q ss_conf 678999999999999974399705654255889999995065657456999999999999
Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~ 142 (149)
....+.-.+.++|+.+= ..........-.+.+...-|++|++.++++++
T Consensus 85 ---------~~~~~~l~~~~iPvV~i--~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~~ 133 (156)
T 2fep_A 85 ---------DEHVAEFKRSPVPIVLA--ASVEEQEETPSVAIDTYDIGAVAMRLLTKLMN 133 (156)
T ss_dssp ---------HHHHHHHHHSSSCEEEE--SCCCTTCCSCEEECCHHHHHHHHHHHHHHHHT
T ss_pred ---------HHHHHHHHCCCCCCCCC--CCCCCCCCCEEEEECHHHHHHHHHHHHHHHHC
T ss_conf ---------27676431222223333--34554653239984399999999999999966