HHsearch alignment of GI: 254780346 and MMDB domain: 3hcw_A_115-246

>3hcw_A (A:115-246) Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.86  E-value=0.54  Score=26.83  Aligned_cols=103  Identities=14%  Similarity=0.065  Sum_probs=76.2

Q ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf             871799980312899999999999999987995555530-0144226999999863311378535665412000665246
Q gi|254780346|r    5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC   83 (149)
Q Consensus         5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V-PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~   83 (149)
                      -.+|+.|.+.-....+....+|..+.+.++|...+...+ .+-++.....+.+........++||+++.          .
T Consensus        17 ~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~----------~   86 (132)
T 3hcw_A           17 VDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISL----------D   86 (132)
T ss_dssp             CSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEES----------S
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----------C
T ss_conf             223322455543201455568899999874985110114554035666655554320357776422222----------2


Q ss_pred             HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf             789999999999999743997056542558899999
Q gi|254780346|r   84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAF  119 (149)
Q Consensus        84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~  119 (149)
                      |.++..+.+.+.+..  ..+|==.+|++.++.+.+.
T Consensus        87 d~~a~~~~~~l~~~g--~~iP~di~ii~fd~~~~~~  120 (132)
T 3hcw_A           87 AMLHLAILSVLYELN--IEIPKDVMTATFNDSYLTE  120 (132)
T ss_dssp             HHHHHHHHHHHHHTT--CCTTTTEEEEEECCSHHHH
T ss_pred             CHHHHHHHHHHHHCC--CCCCCCCCCCCCCCHHHHH
T ss_conf             013333355442033--2232210022568878997