HHsearch alignment of GI: 254780346 and MMDB domain: 3hcw_A_115-246
>3hcw_A (A:115-246) Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=93.86 E-value=0.54 Score=26.83 Aligned_cols=103 Identities=14% Similarity=0.065 Sum_probs=76.2
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH
Q ss_conf 871799980312899999999999999987995555530-0144226999999863311378535665412000665246
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V-PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149)
-.+|+.|.+.-....+....+|..+.+.++|...+...+ .+-++.....+.+........++||+++. .
T Consensus 17 ~~~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~----------~ 86 (132)
T 3hcw_A 17 VDELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISL----------D 86 (132)
T ss_dssp CSEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEES----------S
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC----------C
T ss_conf 223322455543201455568899999874985110114554035666655554320357776422222----------2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 789999999999999743997056542558899999
Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAF 119 (149)
Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~ 119 (149)
|.++..+.+.+.+.. ..+|==.+|++.++.+.+.
T Consensus 87 d~~a~~~~~~l~~~g--~~iP~di~ii~fd~~~~~~ 120 (132)
T 3hcw_A 87 AMLHLAILSVLYELN--IEIPKDVMTATFNDSYLTE 120 (132)
T ss_dssp HHHHHHHHHHHHHTT--CCTTTTEEEEEECCSHHHH
T ss_pred CHHHHHHHHHHHHCC--CCCCCCCCCCCCCCHHHHH
T ss_conf 013333355442033--2232210022568878997