HHsearch results for GI: 254780346 and protein with PDBid: 3hcw_A

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=95.31  E-value=0.17  Score=28.98  Aligned_cols=100  Identities=14%  Similarity=0.093  Sum_probs=42.6

Q ss_pred             CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf             717999803128999999999999999879955555300144226-9999998633113785356654120006652467
Q gi|254780346|r    6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD   84 (149)
Q Consensus         6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e   84 (149)
                      .||++|..+-+......-.+|+.+.+++++.+++.+......+-- -+.+.+.........+||+++.          .|
T Consensus       132 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~----------~d  201 (295)
T 3hcw_A          132 DELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISL----------DA  201 (295)
T ss_dssp             SEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEES----------SH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----------CH
T ss_conf             75677548743157888889999999976999424432566035667777777764147776434557----------78


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH
Q ss_conf             899999999999997439970565425588999
Q gi|254780346|r   85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQ  117 (149)
Q Consensus        85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~Q  117 (149)
                      .++-.+.+.+.+..  ..+|=-..|++.++.+.
T Consensus       202 ~~a~g~~~~l~~~g--~~ip~dv~vvg~d~~~~  232 (295)
T 3hcw_A          202 MLHLAILSVLYELN--IEIPKDVMTATFNDSYL  232 (295)
T ss_dssp             HHHHHHHHHHHHTT--CCTTTTEEEEEECCSHH
T ss_pred             HHHHHHHHHHHHCC--CCCCCCCCEEECCCHHH
T ss_conf             99999999999869--98894614441488689