HHsearch results for GI: 254780346 and protein with PDBid: 3jvd_A
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=91.92 E-value=0.72 Score=25.12 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH
Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467
Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149)
Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149)
-.+|+++.+.....-...-+.|+.+.+.+.+............+-...+...+. ....+|+++|. .|
T Consensus 174 ~~~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~----------~d 240 (333)
T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVF---NNGLPDALIVA----------SP 240 (333)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHH---HTCCCSEEEEC----------CH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH---CCCCCCEEEEC----------CH
T ss_conf 803689704421036788899999999975997326524552021788899996---27998743107----------99
Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH
Q ss_conf 89999999999999743997056542558899999950------65657456999999999999
Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149)
Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149)
.++..+.+.+.+..+ .+|=-..|++.++...+.--. ..+...-|..|++.++++++
T Consensus 241 ~~A~g~~~al~~~g~--~vP~disvig~D~~~~~~~~~p~ltti~~~~~~lg~~Av~~l~~~i~ 302 (333)
T 3jvd_A 241 RLMAGVMRAFTRLNV--RVPHDVVIGGYDDPEWYSFVGAGITTFVPPHEEMGKEAVRLLVDLIE 302 (333)
T ss_dssp HHHHHHHHHHHHTTC--CTTTTCEEEEESCCGGGGGSTTSCEEEECCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 999999999998499--99998799997985999822899739975999999999999999962