Query gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 149 No_of_seqs 114 out of 1909 Neff 5.8 Searched_HMMs 23785 Date Mon May 30 08:46:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780346.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2i0f_A 6,7-dimethyl-8-ribityll 100.0 0 0 348.5 18.9 146 3-148 10-156 (157) 2 1c2y_A Protein (lumazine synth 100.0 0 0 338.2 18.1 144 2-149 10-155 (156) 3 1hqk_A 6,7-dimethyl-8-ribityll 100.0 0 0 336.2 18.0 141 4-148 11-154 (154) 4 1rvv_A Riboflavin synthase; tr 100.0 0 0 334.4 17.8 141 4-148 11-154 (154) 5 1c41_A Lumazine synthase; ribo 100.0 0 0 332.4 19.0 147 2-148 12-195 (200) 6 2c92_A 6,7-dimethyl-8-ribityll 100.0 0 0 331.3 17.9 141 2-148 14-157 (160) 7 1ejb_A Lumazine synthase; anal 100.0 0 0 329.3 17.3 145 2-146 13-165 (168) 8 2obx_A DMRL synthase 1, 6,7-di 100.0 0 0 329.4 12.1 143 2-148 8-156 (157) 9 1di0_A Lumazine synthase; tran 100.0 0 0 325.1 11.9 142 3-148 8-155 (158) 10 1kz1_A 6,7-dimethyl-8-ribityll 100.0 0 0 316.9 17.5 137 1-141 13-154 (159) 11 2b99_A Riboflavin synthase; lu 100.0 2.9E-36 1.2E-40 244.0 7.6 135 4-148 1-137 (156) 12 3hcw_A Maltose operon transcri 95.3 0.17 7.2E-06 29.0 10.6 100 6-117 132-232 (295) 13 2fn9_A Ribose ABC transporter, 94.9 0.17 7.2E-06 29.0 8.4 66 4-74 1-67 (290) 14 3c3k_A Alanine racemase; struc 94.6 0.13 5.3E-06 29.8 7.2 124 6-141 125-254 (285) 15 3gyb_A Transcriptional regulat 94.4 0.3 1.2E-05 27.5 8.8 123 6-142 119-247 (280) 16 1u9c_A APC35852; structural ge 94.3 0.25 1E-05 28.0 8.2 97 2-107 2-127 (224) 17 3g85_A Transcriptional regulat 94.0 0.28 1.2E-05 27.6 8.0 125 5-142 127-261 (289) 18 3gv0_A Transcriptional regulat 93.1 0.37 1.6E-05 26.9 7.4 122 6-142 128-259 (288) 19 3egc_A Putative ribose operon 92.9 0.13 5.3E-06 29.8 4.7 98 7-116 127-225 (291) 20 3jvd_A Transcriptional regulat 91.9 0.72 3E-05 25.1 8.4 123 5-142 174-302 (333) 21 2ioy_A Periplasmic sugar-bindi 91.3 0.83 3.5E-05 24.7 9.5 122 5-142 123-254 (283) 22 3ctp_A Periplasmic binding pro 89.7 0.88 3.7E-05 24.6 6.3 125 5-142 172-302 (330) 23 3huu_A Transcription regulator 89.6 1.2 4.9E-05 23.8 7.2 34 7-40 24-62 (305) 24 3cs3_A Sugar-binding transcrip 89.2 1.3 5.3E-05 23.6 9.0 121 6-141 119-247 (277) 25 3g85_A Transcriptional regulat 88.7 0.52 2.2E-05 26.0 4.6 65 5-73 11-76 (289) 26 3l49_A ABC sugar (ribose) tran 88.6 1.4 5.8E-05 23.3 10.2 90 1-107 1-91 (291) 27 3l6u_A ABC-type sugar transpor 87.8 1.5 6.5E-05 23.1 10.6 38 6-43 9-46 (293) 28 2rgy_A Transcriptional regulat 87.1 1.6 6.8E-05 22.9 6.3 36 6-41 9-44 (290) 29 2iks_A DNA-binding transcripti 86.9 1.8 7.4E-05 22.7 8.7 32 7-38 140-171 (293) 30 3miz_A Putative transcriptiona 86.8 1.1 4.8E-05 23.8 5.4 121 6-141 132-268 (301) 31 3bfj_A 1,3-propanediol oxidore 85.1 0.75 3.1E-05 25.0 3.7 66 5-73 33-100 (387) 32 1qpz_A PURA, protein (purine n 84.0 2.4 0.0001 21.9 6.4 125 6-142 178-309 (340) 33 1ydg_A Trp repressor binding p 83.8 1.6 6.9E-05 22.9 5.0 44 1-45 1-45 (211) 34 3dbi_A Sugar-binding transcrip 83.8 2.5 0.0001 21.8 6.3 125 5-142 181-313 (338) 35 3brq_A HTH-type transcriptiona 82.7 2.7 0.00011 21.6 6.5 63 6-73 20-85 (296) 36 2zki_A 199AA long hypothetical 81.7 1.6 6.9E-05 22.9 4.4 39 4-44 3-41 (199) 37 1dbq_A Purine repressor; trans 81.6 3 0.00013 21.3 7.7 67 6-72 127-194 (289) 38 3d8u_A PURR transcriptional re 81.1 3.1 0.00013 21.2 8.8 123 6-141 121-251 (275) 39 1d4a_A DT-diaphorase, quinone 80.5 2.6 0.00011 21.7 5.0 40 4-43 1-41 (273) 40 3bbl_A Regulatory protein of L 80.4 3.3 0.00014 21.0 7.2 100 6-117 126-228 (287) 41 2ark_A Flavodoxin; FMN, struct 80.1 3.4 0.00014 21.0 5.8 41 3-45 2-44 (188) 42 2hsg_A Glucose-resistance amyl 80.1 1.4 6E-05 23.3 3.6 125 6-142 178-310 (332) 43 3clk_A Transcription regulator 79.9 3.4 0.00014 20.9 5.7 65 5-74 8-74 (290) 44 1byk_A Protein (trehalose oper 79.8 3.4 0.00014 20.9 7.9 33 6-38 116-149 (255) 45 1gud_A ALBP, D-allose-binding 78.9 3.7 0.00015 20.7 7.2 67 6-74 2-68 (288) 46 3kke_A LACI family transcripti 78.4 3.8 0.00016 20.6 6.6 36 6-41 16-51 (303) 47 2h0a_A TTHA0807, transcription 78.4 2.2 9.4E-05 22.1 4.1 123 5-142 114-249 (276) 48 3lft_A Uncharacterized protein 78.2 3.8 0.00016 20.6 5.5 66 5-73 2-70 (295) 49 3cne_A Putative protease I; st 78.1 3.3 0.00014 21.0 5.0 113 4-123 1-121 (175) 50 3kkl_A Probable chaperone prot 77.1 0.92 3.9E-05 24.5 1.9 98 5-106 3-135 (244) 51 3ksm_A ABC-type sugar transpor 76.8 4.2 0.00018 20.4 10.0 67 6-73 1-67 (276) 52 2fep_A Catabolite control prot 76.6 4.3 0.00018 20.3 8.1 66 4-74 15-81 (289) 53 3k9c_A Transcriptional regulat 76.3 4.3 0.00018 20.3 6.7 63 6-74 13-75 (289) 54 2vk2_A YTFQ, ABC transporter p 75.5 4.5 0.00019 20.2 6.8 28 7-34 130-157 (306) 55 2x7x_A Sensor protein; transfe 75.2 4.6 0.00019 20.1 10.4 125 6-142 129-261 (325) 56 3m3p_A Glutamine amido transfe 74.6 4.8 0.0002 20.0 5.1 99 4-124 2-100 (250) 57 3brs_A Periplasmic binding pro 74.5 4.8 0.0002 20.0 9.4 31 7-37 133-163 (289) 58 3n7t_A Macrophage binding prot 74.4 4.8 0.0002 20.0 5.5 102 1-107 5-143 (247) 59 1jye_A Lactose operon represso 72.2 5.5 0.00023 19.6 8.7 121 5-141 179-308 (349) 60 1t5b_A Acyl carrier protein ph 71.8 4.3 0.00018 20.3 4.2 33 5-37 1-35 (201) 61 2ab0_A YAJL; DJ-1/THIJ superfa 71.6 3.5 0.00015 20.9 3.7 95 4-107 1-104 (205) 62 2o20_A Catabolite control prot 71.6 5.7 0.00024 19.6 6.8 122 5-142 180-310 (332) 63 3e3m_A Transcriptional regulat 70.7 5.9 0.00025 19.4 8.7 125 5-143 187-322 (355) 64 2qv7_A Diacylglycerol kinase D 70.6 6 0.00025 19.4 8.9 104 2-124 21-125 (337) 65 3keg_A FMN-dependent NADH-azor 70.0 4.3 0.00018 20.3 3.9 37 5-41 1-41 (212) 66 3jy6_A Transcriptional regulat 69.8 6.2 0.00026 19.3 8.0 65 4-73 6-71 (276) 67 3ce9_A Glycerol dehydrogenase; 69.0 6.4 0.00027 19.2 7.0 63 5-73 34-96 (354) 68 1wo8_A Methylglyoxal synthase; 67.8 6.8 0.00029 19.1 5.1 106 5-122 1-123 (126) 69 1oi4_A Hypothetical protein YH 67.0 2.2 9.1E-05 22.2 1.8 96 2-106 20-122 (193) 70 2v82_A 2-dehydro-3-deoxy-6-pho 66.6 5.1 0.00021 19.9 3.7 88 28-122 25-121 (212) 71 2rjo_A Twin-arginine transloca 65.1 7.7 0.00032 18.7 10.8 28 7-34 138-165 (332) 72 2a5l_A Trp repressor binding p 64.9 7.8 0.00033 18.7 4.9 39 5-44 5-43 (200) 73 3fni_A Putative diflavin flavo 64.3 8 0.00034 18.6 7.1 88 4-105 3-90 (159) 74 3bil_A Probable LACI-family tr 63.8 8.1 0.00034 18.6 5.7 98 5-118 184-282 (348) 75 3e61_A Putative transcriptiona 62.9 8.5 0.00036 18.5 7.8 63 6-73 9-72 (277) 76 2rk3_A Protein DJ-1; parkinson 62.7 7 0.00029 19.0 3.8 96 4-107 2-104 (197) 77 1xmp_A PURE, phosphoribosylami 61.9 8.8 0.00037 18.4 7.9 65 3-72 9-73 (170) 78 2q62_A ARSH; alpha/beta, flavo 61.4 9 0.00038 18.3 6.4 42 1-42 30-72 (247) 79 8abp_A L-arabinose-binding pro 60.9 9.2 0.00039 18.3 7.0 34 5-38 2-35 (306) 80 3p0r_A Azoreductase; structura 60.3 8.8 0.00037 18.4 4.0 38 4-41 3-45 (211) 81 1sg0_A NRH dehydrogenase [quin 59.5 9.7 0.00041 18.1 4.8 38 6-43 3-41 (230) 82 2dri_A D-ribose-binding protei 58.8 10 0.00042 18.0 11.4 124 6-142 124-253 (271) 83 1sy7_A Catalase 1; heme oxidat 58.8 2.5 0.00011 21.8 1.0 96 3-107 532-633 (715) 84 3k4h_A Putative transcriptiona 58.6 10 0.00042 18.0 8.8 67 5-75 8-79 (292) 85 1mxs_A KDPG aldolase; 2-keto-3 57.8 6 0.00025 19.4 2.8 89 26-122 42-139 (225) 86 1vhc_A Putative KHG/KDPG aldol 57.1 10 0.00042 18.0 3.8 89 26-122 33-130 (224) 87 1wbh_A KHG/KDPG aldolase; lyas 56.8 10 0.00042 18.0 3.8 88 27-122 33-129 (214) 88 1ta9_A Glycerol dehydrogenase; 56.6 11 0.00046 17.8 6.9 88 5-111 91-178 (450) 89 1rrm_A Lactaldehyde reductase; 56.1 11 0.00047 17.8 6.7 63 5-73 31-96 (386) 90 3b6i_A Flavoprotein WRBA; flav 55.5 11 0.00048 17.7 4.6 39 5-44 1-40 (198) 91 1rw7_A YDR533CP; alpha-beta sa 55.1 11 0.00048 17.7 6.8 99 5-107 3-136 (243) 92 2yvq_A Carbamoyl-phosphate syn 54.6 12 0.00049 17.6 3.8 95 2-109 21-132 (143) 93 3h75_A Periplasmic sugar-bindi 54.0 12 0.0005 17.6 10.5 103 7-122 147-250 (350) 94 3h5t_A Transcriptional regulat 53.5 12 0.00051 17.5 6.3 107 20-141 221-336 (366) 95 1vlj_A NADH-dependent butanol 50.8 13 0.00057 17.2 6.6 63 5-73 43-109 (407) 96 3m9w_A D-xylose-binding peripl 50.2 14 0.00058 17.2 6.5 37 6-42 3-39 (313) 97 3gbv_A Putative LACI-family tr 50.0 14 0.00058 17.2 5.8 62 8-72 12-76 (304) 98 1n57_A Chaperone HSP31, protei 50.0 14 0.00058 17.2 6.3 94 5-107 48-183 (291) 99 3fvw_A Putative NAD(P)H-depend 48.1 13 0.00055 17.3 3.2 37 4-41 1-38 (192) 100 1o2d_A Alcohol dehydrogenase, 47.3 15 0.00064 16.9 5.9 63 5-73 40-106 (371) 101 1jq5_A Glycerol dehydrogenase; 46.9 15 0.00065 16.9 6.6 63 6-73 32-94 (370) 102 2q9u_A A-type flavoprotein; fl 45.3 16 0.00069 16.7 7.4 39 4-43 255-293 (414) 103 3h5o_A Transcriptional regulat 45.1 17 0.00069 16.7 7.2 30 6-36 179-208 (339) 104 2gwr_A DNA-binding response re 44.8 17 0.0007 16.7 5.5 86 1-114 1-86 (238) 105 2fvy_A D-galactose-binding per 44.6 17 0.00071 16.6 8.0 28 7-34 4-31 (309) 106 2csu_A 457AA long hypothetical 44.1 17 0.00072 16.6 10.9 105 41-148 345-452 (457) 107 2qu7_A Putative transcriptiona 44.0 17 0.00072 16.6 6.9 33 6-38 123-155 (288) 108 2ex4_A Adrenal gland protein A 42.3 6.8 0.00028 19.1 1.0 48 18-75 109-156 (241) 109 3kjx_A Transcriptional regulat 41.7 19 0.00078 16.4 6.7 122 6-142 186-318 (344) 110 1pfk_A Phosphofructokinase; tr 40.4 20 0.00082 16.2 3.5 104 4-122 1-137 (320) 111 2qh8_A Uncharacterized protein 40.0 20 0.00083 16.2 10.0 29 6-35 9-37 (302) 112 1xxl_A YCGJ protein; structura 39.1 11 0.00047 17.8 1.7 20 18-37 50-69 (239) 113 1wa3_A 2-keto-3-deoxy-6-phosph 38.5 15 0.00064 16.9 2.3 86 27-121 27-123 (205) 114 3kht_A Response regulator; PSI 38.0 21 0.0009 16.0 5.7 99 1-122 1-99 (144) 115 3g1w_A Sugar ABC transporter; 37.4 22 0.00091 15.9 11.6 121 6-141 128-258 (305) 116 2amj_A Modulator of drug activ 36.9 22 0.00093 15.9 6.5 53 5-57 12-69 (204) 117 1g2i_A Protease I; intracellul 36.6 15 0.00063 17.0 2.0 91 7-106 2-97 (166) 118 1vhq_A Enhancing lycopene bios 34.9 22 0.00093 15.9 2.7 37 3-41 4-44 (232) 119 1o4v_A Phosphoribosylaminoimid 34.8 24 0.001 15.7 7.7 122 3-143 11-143 (183) 120 2fzv_A Putative arsenical resi 33.8 25 0.001 15.6 3.8 39 5-43 58-97 (279) 121 3oow_A Phosphoribosylaminoimid 32.7 26 0.0011 15.5 7.8 124 2-144 2-138 (166) 122 3lp6_A Phosphoribosylaminoimid 29.9 29 0.0012 15.2 7.2 122 4-144 6-138 (174) 123 3ot1_A 4-methyl-5(B-hydroxyeth 29.4 29 0.0012 15.1 3.3 97 3-107 7-109 (208) 124 2hna_A Protein MIOC, flavodoxi 28.8 30 0.0013 15.1 3.5 36 5-41 1-36 (147) 125 3f6r_A Flavodoxin; FMN binding 28.3 31 0.0013 15.0 4.9 36 5-41 1-36 (148) 126 3bcv_A Putative glycosyltransf 27.9 31 0.0013 15.0 2.7 38 3-43 2-40 (240) 127 2yw3_A 4-hydroxy-2-oxoglutarat 27.8 31 0.0013 15.0 3.4 87 26-122 29-124 (207) 128 2h3h_A Sugar ABC transporter, 27.5 32 0.0013 14.9 9.6 36 5-41 1-36 (313) 129 2hpv_A FMN-dependent NADH-azor 27.1 32 0.0014 14.9 4.1 38 5-42 1-43 (208) 130 1sqs_A Conserved hypothetical 26.5 33 0.0014 14.8 4.2 37 5-41 1-39 (242) 131 1o63_A ATP phosphoribosyltrans 26.4 33 0.0014 14.8 2.6 24 27-50 114-137 (219) 132 1f4p_A Flavodoxin; electron tr 26.3 33 0.0014 14.8 4.9 36 6-42 1-36 (147) 133 1yuw_A Heat shock cognate 71 k 25.7 19 0.00081 16.3 1.1 60 19-78 309-377 (554) 134 3hs3_A Ribose operon repressor 25.5 34 0.0014 14.7 8.5 37 4-40 9-45 (277) 135 2ohh_A Type A flavoprotein FPR 24.2 36 0.0015 14.6 7.4 69 3-81 254-322 (404) 136 3iv7_A Alcohol dehydrogenase I 24.0 27 0.0011 15.3 1.6 60 5-73 37-96 (364) 137 3f2v_A General stress protein 22.8 39 0.0016 14.4 2.3 33 5-41 1-36 (192) 138 2v7y_A Chaperone protein DNAK; 22.1 33 0.0014 14.9 1.7 61 17-77 279-347 (509) 139 3fij_A LIN1909 protein; 11172J 21.3 42 0.0018 14.2 7.7 96 3-109 2-114 (254) 140 3hl0_A Maleylacetate reductase 21.3 42 0.0018 14.2 3.3 58 5-73 34-95 (353) 141 2juw_A UPF0352 protein SO_2176 20.8 43 0.0018 14.1 2.1 29 11-39 3-31 (80) No 1 >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* Probab=100.00 E-value=0 Score=348.55 Aligned_cols=146 Identities=40% Similarity=0.748 Sum_probs=139.4 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEEECCCCC Q ss_conf 6587179998031289999999999999998799555553001442269999998633-113785356654120006652 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAK-TRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~-~~~~~~D~vIaLG~VIkGeT~ 81 (149) ...+||+||.|+||++|+++|+++|.+.|++.|+++++++||||||||+++++++++. ..+.+|||+|+|||||||||+ T Consensus 10 ~~~~kI~IV~s~~n~~It~~l~~~a~~~L~~~g~~~~~i~VPGa~EiP~~~~~~~~~~~~~~~~~d~vIalG~VIkGeT~ 89 (157) T 2i0f_A 10 ADAPHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETY 89 (157) T ss_dssp -CCCEEEEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSS T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCC T ss_conf 89998999977488899999999999999986997589996607665899999998744036775789998878738883 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 4678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) |||+||++|++|||++|+++++||+||||||+|++||++|++++.+|||.|||+||++|++++|+|+ T Consensus 90 H~e~I~~~v~~gl~~lsl~~~~PI~~GILT~~n~~QA~~R~~~~~~nkG~eaA~Aal~mi~l~~~l~ 156 (157) T 2i0f_A 90 HFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARREDKDKGGFAARAALTMIGLRKKFG 156 (157) T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHHCTTTTCHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 5899999999999999721699779997068999999998286666768999999999999998748 No 2 >1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1 Probab=100.00 E-value=0 Score=338.22 Aligned_cols=144 Identities=24% Similarity=0.413 Sum_probs=135.9 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC Q ss_conf 665871799980312899999999999999987995--555530014422699999986331137853566541200066 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ--WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGK 79 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~--~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGe 79 (149) +..+.||+||+|+||++|+++|++||.+.|+++|++ ++.++||||||||++++++++ +++|||+|||||||||| T Consensus 10 ~~~~~ri~IV~s~~n~~I~~~L~~ga~~~l~~~g~~~~i~~~~VPGa~EiP~~~~~l~~----~~~~DaiIaLG~VIkGe 85 (156) T 1c2y_A 10 KAQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGD 85 (156) T ss_dssp SCTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCS T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEECCC T ss_conf 68898899999428789999999999999997599876079984848899999999986----39998799998886289 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 5246789999999999999743997056542558899999950656574569999999999999986369 Q gi|254780346|r 80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLSE 149 (149) Q Consensus 80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~~ 149 (149) |+|||+||++|++|||++|+++++||+||||||+|++||++|++++.+|||+|||+||++|++|+|++.| T Consensus 86 T~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~~k 155 (156) T 1c2y_A 86 TSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 155 (156) T ss_dssp STHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHHCC T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 8389999999999999985516998799850789889999984654445799999999999999998744 No 3 >1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A* Probab=100.00 E-value=0 Score=336.22 Aligned_cols=141 Identities=33% Similarity=0.482 Sum_probs=133.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 5871799980312899999999999999987995---5555300144226999999863311378535665412000665 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) ...||+||.|+||++|++.|++||.+.|.++|+. +++++||||||+|++++++++ +.+|||+|+||||||||| T Consensus 11 ~~~ri~IV~s~~n~~I~~~l~~ga~~~l~~~g~~~~~i~~~~VPGa~EiP~~~~~l~~----~~~~davIaLG~VIkGeT 86 (154) T 1hqk_A 11 EGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELAR----KEDIDAVIAIGVLIRGAT 86 (154) T ss_dssp TTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHT----CTTCCEEEEEEEEECCSS T ss_pred CCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHCEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEEECCC T ss_conf 9989999993086899999999999999985998210389986958899999999984----479785999999981788 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 24678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) +|||+||++|++|||++|+++++||+|||||++|++||++|++++.+|||.|||+||++|++|+|+|. T Consensus 87 ~H~e~I~~~v~~gl~~lsl~~~~PI~~GVLt~~n~~QA~eR~~~~~~nkG~eaa~aal~m~~l~~~lk 154 (154) T 1hqk_A 87 PHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR 154 (154) T ss_dssp THHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHHC T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCC T ss_conf 57999999999999998611599778361179988999987377543519999999999999998639 No 4 >1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* Probab=100.00 E-value=0 Score=334.41 Aligned_cols=141 Identities=28% Similarity=0.458 Sum_probs=134.1 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 5871799980312899999999999999987995---5555300144226999999863311378535665412000665 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) ...||+||.|+||++|+++|++||.+.|.++|+. +++++||||||||++++++++ +++|||+||||||||||| T Consensus 11 ~~~rI~IV~s~~n~~I~~~l~~~a~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~l~~----~~~~d~iIalG~VIkGeT 86 (154) T 1rvv_A 11 TGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE----TKKYDAIITLGTVIRGAT 86 (154) T ss_dssp TTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEEEECCSS T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHCEEEECCCHHHHHHHHHHHHC----CCCCCEEEEEEEEEECCC T ss_conf 9999999980287899999999999999985998655169983863179999999850----477663899999981788 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 24678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) +|||+||++|++|||++|+++++||+||||||+|++||++|++++.+|||.|||+||++|++|+|+|. T Consensus 87 ~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~~~~QA~~R~~~~~~nkG~EaA~aal~m~~l~r~~~ 154 (154) T 1rvv_A 87 THYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE 154 (154) T ss_dssp SHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 45889999999999999733299889646788978999998267554609999999999999986419 No 5 >1c41_A Lumazine synthase; riboflavin biosynthesis, transferase; HET: LMZ; 3.10A {Magnaporthe grisea} SCOP: c.16.1.1 Probab=100.00 E-value=0 Score=332.42 Aligned_cols=147 Identities=24% Similarity=0.387 Sum_probs=136.2 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHH------------------ Q ss_conf 665871799980312899999999999999987995---55553001442269999998633------------------ Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAK------------------ 60 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~------------------ 60 (149) |-...||+||.|+||++|++.|+++|++.|.+.|+. +++++|||+||||+++++++.+. T Consensus 12 d~s~lrI~IV~s~~n~~I~~~Ll~~a~~~L~~~gv~~~~i~v~~VPGA~EiP~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (200) T 1c41_A 12 DGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLG 91 (200) T ss_dssp CCSSCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSTTHHHHHHHHHHHHHHHC--------------- T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 88899999998008799999999999999998699802469999151989999999998732222112222211111123 Q ss_pred --------------HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC Q ss_conf --------------113785356654120006652467899999999999997439970565425588999999506565 Q gi|254780346|r 61 --------------TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH 126 (149) Q Consensus 61 --------------~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~ 126 (149) +.+.+|||+|+|||||||||+||||||++|++|||++|+++++||+||||||+|++||++|++.+. T Consensus 92 ~~~~~~~~~~~~~~a~~~~yDaiIaLG~VIkGeT~Hfe~I~~~v~~gL~~lsl~~~~PI~~GVLT~~n~eQA~~Rag~~~ 171 (200) T 1c41_A 92 SSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIE 171 (200) T ss_dssp ---------------CCSCCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHTTCST T ss_pred CCCCCCCCCHHHHHHHCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC T ss_conf 44332111001345432787779998888707871789999999999999971469856998536799899998727778 Q ss_pred --CCCHHHHHHHHHHHHHHHHHHC Q ss_conf --7456999999999999998636 Q gi|254780346|r 127 --LDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 127 --~nkG~eaa~Aal~mi~l~~~l~ 148 (149) .|||.|||+|||+|++++|+|. T Consensus 172 g~~NKG~EaA~AaleM~~l~r~~~ 195 (200) T 1c41_A 172 GSHNHGEDWGLAAVEMGVRRRDWA 195 (200) T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 887568999999999999999875 No 6 >2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* Probab=100.00 E-value=0 Score=331.31 Aligned_cols=141 Identities=30% Similarity=0.486 Sum_probs=132.6 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC-EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 665871799980312899999999999999987995-5555300144226999999863311378535665412000665 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ-WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~-~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) +-...||+||.|+||++|++.|++||.+.|.++|++ +++++||||||||++++++++ +|||+||||||||||| T Consensus 14 d~~~~rI~IV~s~~n~~I~~~Ll~ga~~~l~~~g~~~~~v~~VPGa~EiP~~~~~l~~------~~DavIaLG~VIkGeT 87 (160) T 2c92_A 14 DASGVRLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELAR------NHDAVVALGVVIRGQT 87 (160) T ss_dssp CCTTCCEEEEEECSSHHHHHHHHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHT------SCSEEEEEEEEECCSS T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHH------HCCCEEEEEEEEECCC T ss_conf 8779989999734889999999999999998779981179981867689999999864------2377489999994797 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC--CCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 2467899999999999997439970565425588999999506--5657456999999999999998636 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS--PSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~--~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) +|||+||++|++|||++|+++++||+||||||+|++||++|++ ++.+|||.|||+|||+|++++|+|. T Consensus 88 ~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n~eQA~~Ra~~~~~~~nKG~eaA~aal~m~~~~~~l~ 157 (160) T 2c92_A 88 PHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTSAEDKGAQATVAALATALTLRELR 157 (160) T ss_dssp THHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESSHHHHHTTBTCTTCSCBHHHHHHHHHHHHHHHHHHHS T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 1789999999999999985159976998679898999998807776566309999999999999999876 No 7 >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A Probab=100.00 E-value=0 Score=329.28 Aligned_cols=145 Identities=23% Similarity=0.317 Sum_probs=133.7 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE---EEEEHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEEC Q ss_conf 6658717999803128999999999999999879955---555300144226999999863311-378535665412000 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQW---SSIVTPGVLEIPAAVSMVMNAKTR-SVTYDGIIVLGVVMR 77 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~---~~i~VPGa~EiP~a~~~~~~~~~~-~~~~D~vIaLG~VIk 77 (149) |-...||+||.|+||++|+++|++||.+.|++.|+.. +.++||||||||+++++++++... +.+|||+|+|||||| T Consensus 13 d~s~~rI~IV~s~~n~~I~~~Ll~ga~~~L~~~g~~~~~i~~~~VPGa~EiP~~~k~l~~~~~~~~~~~D~vIaLG~VIk 92 (168) T 1ejb_A 13 DGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLIK 92 (168) T ss_dssp CCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEEC T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC T ss_conf 97799899997218889999999999999998599822469997782888899999999975520677565998888864 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHH Q ss_conf 665246789999999999999743997056542558899999950656----574569999999999999986 Q gi|254780346|r 78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS----HLDRGGCAARSALAMIELKKS 146 (149) Q Consensus 78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~----~~nkG~eaa~Aal~mi~l~~~ 146 (149) |||+||||||++|++|||++++++++||+||||||+|++||++|++++ .+|||.|||+||++|+.++++ T Consensus 93 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVLT~~n~~QA~~R~~~~~~~~~~nKG~EaA~aaleMa~l~~k 165 (168) T 1ejb_A 93 GSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNHGEDWGAAAVEMAVKFGK 165 (168) T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHBTCSTTCCSCBHHHHHHHHHHHHHHHHST T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 8882788999999999999960479827998557799999999808764566667599999999999998535 No 8 >2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} Probab=100.00 E-value=0 Score=329.40 Aligned_cols=143 Identities=13% Similarity=0.259 Sum_probs=132.5 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC Q ss_conf 665871799980312899999999999999987995---55553001442269999998633113785356654120006 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRG 78 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkG 78 (149) +..+.||+||.|+||++|++.|+++|.+.|.+.|+. +++++||||||||++++++++. ++|||+||||||||| T Consensus 8 d~~~~rI~IV~s~~n~~I~~~ll~~a~~~L~~~g~~~~~i~~~~VPGa~EiP~~~~~l~~~----~~~davIalG~VIkG 83 (157) T 2obx_A 8 DYETVRIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAET----GRYGAVLGTAFVVNG 83 (157) T ss_dssp SCCCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHH----TCCSEEEEEEECCCC T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHC----CCCCEEEEEEEEECC T ss_conf 8778999999811879999999999999999859980537999868587899999999855----898769999999718 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC---CCCHHHHHHHHHHHHHHHHHHC Q ss_conf 652467899999999999997439970565425588999999506565---7456999999999999998636 Q gi|254780346|r 79 KTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH---LDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 79 eT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~---~nkG~eaa~Aal~mi~l~~~l~ 148 (149) ||+||||||++|++|||++|+++++||+||||||+|++||++|++++. .|||+|||+||++|++++|+|+ T Consensus 84 eT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~m~~l~~~l~ 156 (157) T 2obx_A 84 GIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRFFFEHFTVKGKEAARACVEILAAREKIA 156 (157) T ss_dssp SSBCCHHHHHHHHHHHHHHHHHHCCCEEEEEECBSCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 9718899999999999999706698779997588999999998634435653449999999999999998726 No 9 >1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A Probab=100.00 E-value=0 Score=325.11 Aligned_cols=142 Identities=18% Similarity=0.260 Sum_probs=131.8 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC Q ss_conf 65871799980312899999999999999987995---555530014422699999986331137853566541200066 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGK 79 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGe 79 (149) -...||+||.|+||++|+++|+++|.+.|.+.|+. +++++||||||||++++++++ +++|||+|||||||||| T Consensus 8 ~~~~rI~IV~s~~n~~i~~~l~~~a~~~L~~~g~~~~~i~~~~VPGa~EiP~a~~~l~~----~~~~davIalG~VIkGe 83 (158) T 1di0_A 8 KTSFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR----TGRYAAIVGAAFVIDGG 83 (158) T ss_dssp -CCEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEECCCCS T ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEECCC T ss_conf 88989999983277999999999999999984999363699985856479999999984----58988899999997599 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHC Q ss_conf 524678999999999999974399705654255889999995065657---456999999999999998636 Q gi|254780346|r 80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHL---DRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~---nkG~eaa~Aal~mi~l~~~l~ 148 (149) |+|||+||++|++|||++|+++++||+||||||+|++||++|++++.+ |||.|||+||++|++++++|. T Consensus 84 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gVLt~~n~eQA~~R~~~~~~~~~~KG~EaA~aal~mi~l~~~l~ 155 (158) T 1di0_A 84 IYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA 155 (158) T ss_dssp SBCCHHHHHHHHHHHHHHHHHHCCCEEEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 746899999999999998653299779996587989999987364423430329999999999999998877 No 10 >1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A Probab=100.00 E-value=0 Score=316.91 Aligned_cols=137 Identities=26% Similarity=0.403 Sum_probs=125.5 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH-CCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 966587179998031289999999999999998-7995---555530014422699999986331137853566541200 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHS-RAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~-~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) |+-...||+||.|+||++|+++|++||.+.|.+ .++. +++++||||||||++++++++ +++|||+||||||| T Consensus 13 l~~~~lrI~IV~s~~n~~i~~~Ll~ga~~~l~~~~g~~~~~i~~~~VPGa~EiP~~~~~~~~----~~~~DaiIaLG~VI 88 (159) T 1kz1_A 13 LKGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIA----RNTYDAVIGIGVLI 88 (159) T ss_dssp CCCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHH----HSCCSEEEEEEEEE T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEEE T ss_conf 78889989999732878999999999999999965999545489983848789999999860----27877699988885 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHH Q ss_conf 06652467899999999999997439970565425588999999506565-745699999999999 Q gi|254780346|r 77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH-LDRGGCAARSALAMI 141 (149) Q Consensus 77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~-~nkG~eaa~Aal~mi 141 (149) ||||+|||+||++|++|||++|+++++||+||||||+|++||++|++++. .|||.|||+||++|+ T Consensus 89 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n~~QA~~R~~~~~~~nkG~eaA~aaleMa 154 (159) T 1kz1_A 89 KGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGGHNHGNDWGSAAVEMG 154 (159) T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESSHHHHHHHBTCTTCCBHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHH T ss_conf 389828899999999999999732499879986177999999998078677766899999999999 No 11 >2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* Probab=100.00 E-value=2.9e-36 Score=244.03 Aligned_cols=135 Identities=18% Similarity=0.205 Sum_probs=123.4 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 5871799980312899999999999999987995--55553001442269999998633113785356654120006652 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ--WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~--~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) |.+||+||.|+||.- .|..+|.+.|++++.+ ++.++|||+||||++++++++ +.+||++|+|||| |+|+ T Consensus 1 m~kkIgIV~t~Fnr~---dM~~~Ai~~L~~~g~~~~I~~~~VPGa~ElP~a~~~l~~----~~~~davialG~V--G~T~ 71 (156) T 2b99_A 1 MTKKVGIVDTTFARV---DMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLE----EEGCDIVMALGMP--GKAE 71 (156) T ss_dssp -CCEEEEEEESSCSS---CCHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHH----HSCCSEEEEEECC--CSSH T ss_pred CCCEEEEEEEEEHHH---HHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHH----CCCCCEEEEEEEE--CCCC T ss_conf 996799998454099---999999999997299974799986966579999999973----4798889999775--0666 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 4678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) ||||||+++++||+++|+++++||+ +|+|++|+.|+++|......|||+|+|++|++|+.+.+.|. T Consensus 72 h~~~va~~~s~gl~~~~l~t~~pIi-~V~~~ede~q~~~~~~~~a~~rg~e~A~~a~~m~~~~~~L~ 137 (156) T 2b99_A 72 KDKVCAHEASLGLMLAQLMTNKHII-EVFVHEDEAKDDKELDWLAKRRAEEHAENVYYLLFKPEYLT 137 (156) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCEE-EEECCGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHCCCEE-EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 1041599999999999887689989-99746875665998778888779999999999998199988 No 12 >3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp} Probab=95.31 E-value=0.17 Score=28.98 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=42.6 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 717999803128999999999999999879955555300144226-9999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .||++|..+-+......-.+|+.+.+++++.+++.+......+-- -+.+.+.........+||+++. .| T Consensus 132 ~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aii~~----------~d 201 (295) T 3hcw_A 132 DELIFITEKGNFEVSKDRIQGFETVASQFNLDYQIIETSNEREVILNYMQNLHTRLKDPNIKQAIISL----------DA 201 (295) T ss_dssp SEEEEEEESSCCHHHHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHHTCTTSCEEEEES----------SH T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC----------CH T ss_conf 75677548743157888889999999976999424432566035667777777764147776434557----------78 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 899999999999997439970565425588999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQ 117 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~Q 117 (149) .++-.+.+.+.+.. ..+|=-..|++.++.+. T Consensus 202 ~~a~g~~~~l~~~g--~~ip~dv~vvg~d~~~~ 232 (295) T 3hcw_A 202 MLHLAILSVLYELN--IEIPKDVMTATFNDSYL 232 (295) T ss_dssp HHHHHHHHHHHHTT--CCTTTTEEEEEECCSHH T ss_pred HHHHHHHHHHHHCC--CCCCCCCCEEECCCHHH T ss_conf 99999999999869--98894614441488689 No 13 >2fn9_A Ribose ABC transporter, periplasmic ribose- binding protein; RBP, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima MSB8} PDB: 2fn8_A* Probab=94.86 E-value=0.17 Score=28.97 Aligned_cols=66 Identities=12% Similarity=0.082 Sum_probs=45.2 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 58717999803128999999999999999879955555300144226-999999863311378535665412 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) |+.||++|........-..+.+|+.+.+++.|++...+...+.-+-- ..++.++ +.++||+|..+. T Consensus 1 ~~g~Igvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~-----~~~vdgii~~~~ 67 (290) T 2fn9_A 1 MKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAII-----AAGYDAIIFNPT 67 (290) T ss_dssp --CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEECCS T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEECCC T ss_conf 9898999928898999999999999999986998999969999899999999999-----749985530133 No 14 >3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.99A {Actinobacillus succinogenes 130Z} Probab=94.58 E-value=0.13 Score=29.77 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=62.4 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541200066524678 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) .||+++...-.......-+.|+.+.+.+++.+.+.+.+.+.++.....+..........++|++++. .|. T Consensus 125 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~----------~d~ 194 (285) T 3c3k_A 125 KRIALINHDLAYQYAQHRESGYLNRLKFHGLDYSRISYAENLDYMAGKLATFSLLKSAVKPDAIFAI----------SDV 194 (285) T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHHTCCCCEEEECSSSSHHHHHHHHHHHHSSSSCCSEEEES----------SHH T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEC----------CHH T ss_conf 5699982445664045767999999998599843121222114555789999887417997537745----------779 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHH Q ss_conf 9999999999999743997056542558899999950------6565745699999999999 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMI 141 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi 141 (149) .+..+.+.+.+.. ..+|=-..|++.++...+..-. ..+...-|..|++.+++++ T Consensus 195 ~a~g~~~~l~~~g--~~vp~di~vig~d~~~~~~~~~p~lttv~~~~~~~g~~a~~~L~~~i 254 (285) T 3c3k_A 195 LAAGAIQALTESG--LSIPQDVAVVGFDGVDISQITVPALTTVQQPSEQIGMKAVSLLLEQI 254 (285) T ss_dssp HHHHHHHHHHHTT--CCTTTTCEEECSBCCGGGGTSSSCCBEEECCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCC--CCCCCEEEEEECCCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHH T ss_conf 9999999999849--97784389982387289981589834999499999999999999997 No 15 >3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum} Probab=94.40 E-value=0.3 Score=27.50 Aligned_cols=123 Identities=16% Similarity=0.108 Sum_probs=69.6 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541200066524678 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) .||+.+...+.. ...-++|+.+.+.+++.........|.+....+.+.+........++|++++. .|. T Consensus 119 ~~i~~~~~~~~~--~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~d~ 186 (280) T 3gyb_A 119 THIAHLRVGSGA--GLRRFESFEATMRAHGLEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS----------NDI 186 (280) T ss_dssp CSEEEECCSSHH--HHHHHHHHHHHHHHTTCCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES----------SHH T ss_pred EEEEECCCCCHH--HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CHH T ss_conf 467630123217--89998888778997299742010134453778899999998538998389956----------889 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH Q ss_conf 99999999999997439970565425588999999506------5657456999999999999 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149) .+-.+.+.+.+..+ .+|=-..|++.++...+....- .....-|..|++.++++++ T Consensus 187 ~a~g~~~~l~~~g~--~iP~dv~vvg~d~~~~~~~~~p~lttv~~~~~~ig~~av~~l~~~i~ 247 (280) T 3gyb_A 187 TAIGALGAARELGL--RVPEDLSIIGYDNTPLAQTRLINLTTIDDNSIGVGYNAALLLLSMLD 247 (280) T ss_dssp HHHHHHHHHHHHTC--CTTTTCEEEEESCCHHHHSTTTCCCEEECCHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf 99999999998799--89987699998981898704898259985999999999999999965 No 16 >1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, parkinson'S disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2 Probab=94.34 E-value=0.25 Score=27.98 Aligned_cols=97 Identities=12% Similarity=0.119 Sum_probs=61.6 Q ss_pred CCCCCEEEEEEECH------------HHHHHHHHHHHHHHHHHHCCCCEEEEEHHH------------HHHHHHHHHHHH Q ss_conf 66587179998031------------289999999999999998799555553001------------442269999998 Q gi|254780346|r 2 EVFIPHVLIIEARF------------YENLSAMLFEGCVNVLHSRAVQWSSIVTPG------------VLEIPAAVSMVM 57 (149) Q Consensus 2 ~~~~~kI~IV~s~~------------~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG------------a~EiP~a~~~~~ 57 (149) |.|.+||+||.|+. .+|. -...+.|.+.|++++.....| .+.........+ T Consensus 2 ~~M~KkvLiv~s~~~~~~~~~~tG~~~~E~-----~~P~~~l~~aG~~V~iaSp~gg~~~~d~~~~~~~~~~~~~~~~~l 76 (224) T 1u9c_A 2 NAMSKRVLMVVTNHTTITDDHKTGLWLEEF-----AVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAAL 76 (224) T ss_dssp --CCCEEEEEECCCCEEETTEECCBCHHHH-----HHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHT T ss_pred CCCCCEEEEEECCCHHCCCCCCCCCCHHHH-----HHHHHHHHHCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHH T ss_conf 867773899975810216887563028889-----999999998899799994489841144054531103568888886 Q ss_pred HHH-----HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 633-----11378535665412000665246789999999999999743997056 Q gi|254780346|r 58 NAK-----TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 58 ~~~-----~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) +.. ....+||+++.-| |--.-+++-.+.....+.+-..+.++||+- T Consensus 77 ~~~~~l~~v~~~dydav~ipG----G~g~~~~l~~~~~l~~li~~~~~~~k~iaa 127 (224) T 1u9c_A 77 KHTARLSKDDAHGFDAIFLPG----GHGTMFDFPDNETLQYVLQQFAEDGRIIAA 127 (224) T ss_dssp TSBEECCGGGGSSCSEEEECC----CTTHHHHSTTCHHHHHHHHHHHHTTCEEEE T ss_pred HCCCCHHHCCHHHCCEEEECC----CCCHHHHCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 376885567975689899589----830777521158999999999975997999 No 17 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=94.00 E-value=0.28 Score=27.61 Aligned_cols=125 Identities=16% Similarity=0.116 Sum_probs=63.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 8717999803128999999999999999879955555-300144226999999863311378535665412000665246 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) ..||+++.+.-....+..-++|+++.+.++|++++.. ..++.+..-.+.+.+.+-.....++||++|.. T Consensus 127 ~r~i~~i~~~~~~~~~~~R~~gf~~a~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~aii~~~---------- 196 (289) T 3g85_A 127 YKSAAAILTESLNDAMDNRNKGFIETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALFCNS---------- 196 (289) T ss_dssp CCBCEEEECCCSSHHHHHHHHHHHHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEEESS---------- T ss_pred CCCEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCC---------- T ss_conf 9734114567678389999860036788729986631474044321357898887763178865433178---------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEC--CCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHHH Q ss_conf 7899999999999997439970565425--5889999995065-------657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVV--VDSEQQAFDRVSP-------SHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt--~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi~ 142 (149) |.++-.+.+.+.+..+ .+|=-..|++ -++.+.+.- ..+ ....-|..|++.++++++ T Consensus 197 d~~a~g~~~al~~~g~--~vP~DisV~~igfdd~~~~~~-~~p~lttV~~~~~~~g~~av~~l~~~i~ 261 (289) T 3g85_A 197 DSIALGVISVLNKRQI--SIPDDIEIVAIGMNDREYTEF-STPPVTIVDIPIEEMAGTCISLVEKLIN 261 (289) T ss_dssp HHHHHHHHHHHHHTTC--CTTTTCEEEEEECSCHHHHHS-SSSCCEEEECCHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCCC--CCCCCEEEEEECCCCHHHHHH-CCCCEEEEEECHHHHHHHHHHHHHHHHC T ss_conf 4999999999998798--669623999847797799961-5898169996999999999999999964 No 18 >3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics, protein structure initiative; 2.35A {Agrobacterium tumefaciens str} Probab=93.09 E-value=0.37 Score=26.86 Aligned_cols=122 Identities=16% Similarity=0.030 Sum_probs=62.7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE---EHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 717999803128999999999999999879955555---300144226-9999998633113785356654120006652 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i---~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) .||+++...=.....+.-++|+.+.++++|.+.... ..+...|-- -.++.++ ....++|++++. T Consensus 128 ~~I~~i~~~~~~~~~~~R~~Gf~~a~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~ai~~~--------- 195 (288) T 3gv0_A 128 KRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLM---QSSDRPDGIVSI--------- 195 (288) T ss_dssp CEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHT---TSSSCCSEEEES--------- T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH---HHCCCCCCCCCC--------- T ss_conf 60899648754323878889999999983998562331133100236789999986---422577523446--------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 46789999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) .|.++..+.+++.+.. ..+|=-..|++.++...+.--. .....-.|+.|++.++++++ T Consensus 196 -~d~~a~~~~~~l~~~g--~~vP~dv~iigfd~~~~~~~~~p~ltti~~~~~~~g~~a~~~l~~~i~ 259 (288) T 3gv0_A 196 -SGSSTIALVAGFEAAG--VKIGEDVDIVSKQSAEFLNWIKPQIHTVNEDIKLAGRELAKALLARIN 259 (288) T ss_dssp -CHHHHHHHHHHHHTTT--CCTTTSCEEEEEESSTTHHHHCTTSEEEECCHHHHHHHHHHHHHHHHT T ss_pred -CHHHHHHHHHHHHHCC--CCCCCCEEEEEECCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf -6699999999999849--988985189997782899826998469997999999999999999976 No 19 >3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcription, transcription regulation; 2.35A {Burkholderia thailandensis E264} Probab=92.92 E-value=0.13 Score=29.80 Aligned_cols=98 Identities=11% Similarity=0.042 Sum_probs=36.2 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 1799980312899999999999999987995555-530014422699999986331137853566541200066524678 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) +|+++...-+..-.....+|+.+.+.+.|..... ...++.++...+.+..........++|+++|. .|. T Consensus 127 ~i~~~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~D~ 196 (291) T 3egc_A 127 RIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTGADRPTALLTS----------SHR 196 (291) T ss_dssp SEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEEC------CCHHHHHHHHTC-CCCSEEEES----------SHH T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCEECC----------CHH T ss_conf 6988327743305889999999999984998432112367764557999999998559998510115----------789 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHH Q ss_conf 9999999999999743997056542558899 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQ 116 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~ 116 (149) ++-.+.+.+.+..+ .+|=-..|++.++.+ T Consensus 197 ~A~g~~~al~~~g~--~vP~di~vig~D~~~ 225 (291) T 3egc_A 197 ITEGAMQALNVLGL--RYGPDVEIVSFDNLP 225 (291) T ss_dssp HHHHHHHHHHHHTC--CBTTTBEEEEESCCG T ss_pred HHHHHHHHHHHHCC--CCCCCCEEEEECCHH T ss_conf 99879999998389--889986899967869 No 20 >3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcription regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum} Probab=91.92 E-value=0.72 Score=25.12 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=78.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) -.+|+++.+.....-...-+.|+.+.+.+.+............+-...+...+. ....+|+++|. .| T Consensus 174 ~~~i~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~ai~~~----------~d 240 (333) T 3jvd_A 174 GMNIAALVGEESLSTTQERMRGISHAASIYGAEVTFHFGHYSVESGEEMAQVVF---NNGLPDALIVA----------SP 240 (333) T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHHH---HTCCCSEEEEC----------CH T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHH---CCCCCCEEEEC----------CH T ss_conf 803689704421036788899999999975997326524552021788899996---27998743107----------99 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) .++..+.+.+.+..+ .+|=-..|++.++...+.--. ..+...-|..|++.++++++ T Consensus 241 ~~A~g~~~al~~~g~--~vP~disvig~D~~~~~~~~~p~ltti~~~~~~lg~~Av~~l~~~i~ 302 (333) T 3jvd_A 241 RLMAGVMRAFTRLNV--RVPHDVVIGGYDDPEWYSFVGAGITTFVPPHEEMGKEAVRLLVDLIE 302 (333) T ss_dssp HHHHHHHHHHHHTTC--CTTTTCEEEEESCCGGGGGSTTSCEEEECCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHC T ss_conf 999999999998499--99998799997985999822899739975999999999999999962 No 21 >2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis} Probab=91.32 E-value=0.83 Score=24.72 Aligned_cols=122 Identities=11% Similarity=0.060 Sum_probs=68.7 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 8717999803128999999999999999879955555-300144226999999863311378535665412000665246 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) ..||+++...-+..-...-.+|+.+.|.+++ ..+.+ ...|.+....+.+.+-+-.....++|++++.. T Consensus 123 ~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~---------- 191 (283) T 2ioy_A 123 KGNVVELEGIPGASAARDRGKGFDEAIAKYP-DIKIVAKQAADFDRSKGLSVMENILQAQPKIDAVFAQN---------- 191 (283) T ss_dssp CEEEEEEECCTTCHHHHHHHHHHHHHHTTCT-TEEEEEEEECTTCHHHHHHHHHHHHHHCSCCCEEEESS---------- T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEECC---------- T ss_conf 9879999799998699999999999998779-98278885376337999999999995598997899688---------- Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH--HCC-------CCCCCHHHHHHHHHHHHH Q ss_conf 78999999999999974399705654255889999995--065-------657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VSP-------SHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R--~~~-------~~~nkG~eaa~Aal~mi~ 142 (149) |.++..+.+.+.+.. |=..-|++.++...+... .++ +...-|+.|++.++++++ T Consensus 192 d~~a~~~~~~~~~~g-----~~dv~ivg~d~~~~~~~~~~~~~~~~tv~~~~~~~G~~A~~~l~~~i~ 254 (283) T 2ioy_A 192 DEMALGAIKAIEAAN-----RQGIIVVGFDGTEDALKAIKEGKMAATIAQQPALMGSLGVEMADKYLK 254 (283) T ss_dssp HHHHHHHHHHHHHTT-----CCCCEEEEEECCHHHHHHHHTTSCCEEEECCHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHCC-----CCCCEEEEECCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 299999999999809-----998889997896899998745996289953999999999999999976 No 22 >3ctp_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens qymf} Probab=89.67 E-value=0.88 Score=24.58 Aligned_cols=125 Identities=17% Similarity=0.173 Sum_probs=77.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) -.||+++.+......++.=..|+.+.+.+++.....+..+..+..... +..++......++||+++. .| T Consensus 172 ~r~I~~l~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ai~~~----------~d 240 (330) T 3ctp_A 172 CRKILHIKGPEVFEATELRYKGFLDGARAKDLEIDFIEFQHDFQVKML-EEDINSMKDIVNYDGIFVF----------ND 240 (330) T ss_dssp CCSEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCEEEECSSSCCGGGG-GCCCTTGGGGGGSSEEEES----------SH T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH-HHHHHHHHHCCCCCCCEEC----------CH T ss_conf 966999706666708999999999999854555420001230157789-9888888734589852323----------78 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) ..+..+.+.+.+..+ .+|=-..|++.++...+..-. ..+...-|..|++.++++++ T Consensus 241 ~~a~g~~~~l~~~g~--~vp~disvig~d~~~~~~~~~p~ltti~~~~~~~g~~Av~~L~~~i~ 302 (330) T 3ctp_A 241 IAAATVMRALKKRGV--SIPQEVQIIGFDNSFIGELLYPSLTTINQPIEALAYTIIELLIKIIN 302 (330) T ss_dssp HHHHHHHHHHHHTTC--CTTTTCEEECSBCCTHHHHSSSCCBEEECCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCC--CCCCCEEEEECCCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf 999999999998199--98722688512872888831899549985999999999999999961 No 23 >3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, structural genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus JCSC1435} Probab=89.60 E-value=1.2 Score=23.79 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=14.9 Q ss_pred EEEEEEECH-----HHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 179998031-----2899999999999999987995555 Q gi|254780346|r 7 HVLIIEARF-----YENLSAMLFEGCVNVLHSRAVQWSS 40 (149) Q Consensus 7 kI~IV~s~~-----~~~i~~~ll~ga~~~l~~~~~~~~~ 40 (149) .|++|.++. +......+++|..+.+.+.|++... T Consensus 24 ~Igli~~~~~~~~~~~pf~~~~~~~i~~~~~~~g~~~~l 62 (305) T 3huu_A 24 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRM 62 (305) T ss_dssp EEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEE T ss_pred EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 799996776532237989999999999999975998999 No 24 >3cs3_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; 2.40A {Enterococcus faecalis V583} Probab=89.20 E-value=1.3 Score=23.61 Aligned_cols=121 Identities=12% Similarity=0.028 Sum_probs=68.7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHH-HCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 7179998031289999999999999998799555553001442269999998633-113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAK-TRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~-~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .||+++...=+........+|+.+.+.+++.+...+..+...+- ..+...... ....++||+++- .| T Consensus 119 ~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ai~~~----------~d 186 (277) T 3cs3_A 119 KKVLLLSGPEKGYDSQERLAVSTRELTRFGIPYEIIQGDFTEPS--GYAAAKKILSQPQTEPVDVFAF----------ND 186 (277) T ss_dssp SCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCEEEEECCSSHHH--HHHHHHHHTTSCCCSSEEEEES----------SH T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHCCCCCCEEEEEC----------CH T ss_conf 14888517876522888878899999983997202102222004--8999999863367887078717----------87 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC-------CCCCHHHHHHHHHHHH Q ss_conf 89999999999999743997056542558899999950656-------5745699999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS-------HLDRGGCAARSALAMI 141 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~-------~~nkG~eaa~Aal~mi 141 (149) .++..+.+.+.+.. ..+|=-..|++.+|.+.+.-- .+. ...-|..|++.+++++ T Consensus 187 ~~A~gv~~~l~~~g--~~vP~dv~vig~d~~~~~~~~-~p~ltti~~~~~~lg~~a~~~l~~~i 247 (277) T 3cs3_A 187 EMAIGVYKYVAETN--YQMGKDIRIIGFDNSELGAFV-QPRLATIAYSKHRWGMVAAEKIIHLM 247 (277) T ss_dssp HHHHHHHHHHTTSS--CCBTTTEEEECSSCCHHHHHS-SSCCBEEECCHHHHHHHHHHHHHHHH T ss_pred HHHHCHHHHHHHCC--CCCCCCEEEEEECCHHHHHHC-CCCCEEEEECHHHHHHHHHHHHHHHH T ss_conf 88635589999749--988984389998888999730-89956998499999999999999996 No 25 >3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics, protein structure initiative; 1.84A {Clostridium acetobutylicum atcc 824} Probab=88.71 E-value=0.52 Score=26.00 Aligned_cols=65 Identities=11% Similarity=0.224 Sum_probs=42.1 Q ss_pred CCEEEEEEE-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 871799980-312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEA-RFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s-~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+-|+++.+ ++-...-..+++|..+.+.+.|+.+..+..+...+.-.....+ ......||+|..+ T Consensus 11 ~~~Ia~~~~~d~~~~~~~~~~~gi~~~~~~~g~~~~l~~~~~~~d~~~~~~~~----~~~~~vdgiIv~~ 76 (289) T 3g85_A 11 KPTIALYWSSDISVNIISRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGI----SKENSFDAAIIAN 76 (289) T ss_dssp CCEEEEEEETTSCGGGHHHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGG----STTTCCSEEEESS T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH----HHHCCCCEEEECC T ss_conf 99899996875677899999999999999869967999868971099999999----9857978899778 No 26 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=88.56 E-value=1.4 Score=23.34 Aligned_cols=90 Identities=8% Similarity=-0.015 Sum_probs=55.0 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEEECCC Q ss_conf 9665871799980312899999999999999987995555530014422-699999986331137853566541200066 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEI-PAAVSMVMNAKTRSVTYDGIIVLGVVMRGK 79 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~Ei-P~a~~~~~~~~~~~~~~D~vIaLG~VIkGe 79 (149) |.+.-++|++|...........+..|+.+.+++.|++...+...+..+- --.++.++ ..++||+|..+ T Consensus 1 ~s~~gk~Ig~i~~~~~~~f~~~~~~g~~~~a~~~G~~~~~~~~~~d~~~q~~~i~~~i-----~~~vDgiIi~~------ 69 (291) T 3l49_A 1 MSLEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRNDQTQVSQIQTLI-----AQKPDAIIEQL------ 69 (291) T ss_dssp -CCTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-----HHCCSEEEEES------ T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEECC------ T ss_conf 9988999999958999889999999999999974999999938999999999999999-----74999999778------ Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 5246789999999999999743997056 Q gi|254780346|r 80 TAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) ++. .......+-..+.++|++. T Consensus 70 ~~~------~~~~~~l~~~~~~~IPvv~ 91 (291) T 3l49_A 70 GNL------DVLNPWLQKINDAGIPLFT 91 (291) T ss_dssp SCH------HHHHHHHHHHHHTTCCEEE T ss_pred CCC------HHHHHHHHHHHHCCCCEEE T ss_conf 640------3158999999986993784 No 27 >3l6u_A ABC-type sugar transport system periplasmic component; structural genomics, nysgrc, target 11006S, PSI-2, protein structure initiative; 1.90A {Exiguobacterium sibiricum} Probab=87.82 E-value=1.5 Score=23.05 Aligned_cols=38 Identities=5% Similarity=-0.115 Sum_probs=22.4 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 71799980312899999999999999987995555530 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) +.|++|........-..|+++..+.+++.|++...... T Consensus 9 ~~Igvi~~~~~~~f~~~~~~~i~~~a~~~Gy~~~~~~~ 46 (293) T 3l6u_A 9 NIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATS 46 (293) T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 99999996899989999999999999986998999979 No 28 >2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, sugar binding protein, structural genomics; 2.05A {Burkholderia phymatum STM815} Probab=87.05 E-value=1.6 Score=22.94 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=19.1 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 717999803128999999999999999879955555 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) .-|++|........-..+++|..+.+.+.|...-.+ T Consensus 9 ~~Igviip~~~~~~~~~~~~gi~~~~~~~g~~~~i~ 44 (290) T 2rgy_A 9 GIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVA 44 (290) T ss_dssp CEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEE T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 989999389878899999999999999869989999 No 29 >2iks_A DNA-binding transcriptional dual regulator; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.85A {Escherichia coli K12} Probab=86.85 E-value=1.8 Score=22.71 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=13.9 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 17999803128999999999999999879955 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQW 38 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~ 38 (149) +++++...-.......-.+|+.+.+.+++.+. T Consensus 140 ~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~ 171 (293) T 2iks_A 140 TVLYLGALPELSVSFLREQGFRTAWKDDPREV 171 (293) T ss_dssp SEEEEEECTTSHHHHHHHHHHHHHHTTCCCCE T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCCE T ss_conf 59998325555405789999999999769860 No 30 >3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli} Probab=86.79 E-value=1.1 Score=23.85 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=57.7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE------HHHHHHHHH---HHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 7179998031289999999999999998799555553------001442269---9999986331137853566541200 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV------TPGVLEIPA---AVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~------VPGa~EiP~---a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) .||+++...-.......-++|+.+.+.+++......+ .|...+--. ++..++ ....++||+++.. T Consensus 132 ~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~ai~~~~--- 205 (301) T 3miz_A 132 RRIGYIRLNPILLGAELRLDAFRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEML---KQDDRPTAIMSGN--- 205 (301) T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHH---TSTTCCSEEEESS--- T ss_pred CEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHH---HCCCCCCCCCCCC--- T ss_conf 7599984785456414665999999998599867624664034530466779999999999---5599998300388--- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC-------CCCCHHHHHHHHHHHH Q ss_conf 0665246789999999999999743997056542558899999950656-------5745699999999999 Q gi|254780346|r 77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS-------HLDRGGCAARSALAMI 141 (149) Q Consensus 77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~-------~~nkG~eaa~Aal~mi 141 (149) +.++-.+.+.+.+..++ +|=-..|++.++.+.+.....+. ...-|..|++.+++++ T Consensus 206 -------d~~a~g~~~~l~~~g~~--vp~di~ivg~d~~~~~~~~~~p~ltti~~~~~~~g~~av~~L~~~i 268 (301) T 3miz_A 206 -------DEMAIQIYIAAMALGLR--IPQDVSIVGFDDFRTVTMALKPELTTAALPYYDLGREGAKWLNDLI 268 (301) T ss_dssp -------HHHHHHHHHHHHTTTCC--HHHHCEEECSBCCHHHHTTSSSCCBEEECCHHHHHHHHHHHHHHHH T ss_pred -------HHHHHHHHHHHHHHCCC--CCCCCEEEECCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH T ss_conf -------99999999999981998--8963002412776889962799816999699999999999999996 No 31 >3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics, structural proteomics in europe, spine; 2.70A {Klebsiella pneumoniae} Probab=85.08 E-value=0.75 Score=25.01 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=41.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEE Q ss_conf 8717999803128999999999999999879955555-30014422699-999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||....-......+++..++.|.+.|+++.++ .+++ |-|.. +..+.+ ..+..++|.||++| T Consensus 33 ~kkvlivt~~~~~~~~~~~~~~v~~~L~~~gi~~~vf~~v~~--~p~~~~v~~~~~-~~~~~~~D~IiavG 100 (387) T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEP--NPKDTNVRDGLA-VFRREQCDIIVTVG 100 (387) T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCS--SCBHHHHHHHHH-HHHHTTCCEEEEEE T ss_pred CCEEEEEECCCHHHHCCCHHHHHHHHHHHCCCEEEEECCCCC--CCCHHHHHHHHH-HHHHCCCCEEEECC T ss_conf 986999989767861156999999999976995999837368--999999999999-88733998899808 No 32 >1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ... Probab=84.02 E-value=2.4 Score=21.87 Aligned_cols=125 Identities=12% Similarity=0.115 Sum_probs=57.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 717999803128999999999999999879955555-3001442269999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .||+++.+.-.......-..|..+.+.+++.+.... ...+-++...+.+.+.+-......++|++|. .| T Consensus 178 ~~I~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~d 247 (340) T 1qpz_A 178 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG----------GD 247 (340) T ss_dssp CCEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES----------SH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CC T ss_conf 86999937644521789999999999986999980138965752568999999998379998279956----------82 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 89999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) .++..+.+.+.+..+ .+|=-..|++.++.+.+..-. .......|..|++.++++++ T Consensus 248 ~~A~~~~~~l~~~G~--~vP~di~vvg~d~~~~~~~~~p~ltti~~~~~~~g~~Av~~L~~~i~ 309 (340) T 1qpz_A 248 IMAMGALCAADEMGL--RVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIV 309 (340) T ss_dssp HHHHHHHHHHHHTTC--CTTTTCEEEEEECCTTGGGSSSCCEEEECCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCC--CCCCCEEEEEECCCHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHHH T ss_conf 888999899998599--88998599987883898823898549976999999999999999970 No 33 >1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A* Probab=83.83 E-value=1.6 Score=22.88 Aligned_cols=44 Identities=7% Similarity=0.017 Sum_probs=35.2 Q ss_pred CCCCCC-EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHH Q ss_conf 966587-179998031289999999999999998799555553001 Q gi|254780346|r 1 MEVFIP-HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPG 45 (149) Q Consensus 1 m~~~~~-kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG 45 (149) |++..| ||+||..+++.. |..|.+.+.+.+.+.|++.+.+.++. T Consensus 1 ~~~~~~mKilivy~S~~Gn-T~~lA~~ia~g~~~~G~ev~~~~l~~ 45 (211) T 1ydg_A 1 MSLTAPVKLAIVFYSSTGT-GYAMAQEAAEAGRAAGAEVRLLKVRE 45 (211) T ss_dssp ----CCCEEEEEECCSSSH-HHHHHHHHHHHHHHTTCEEEEEECCC T ss_pred CCCCCCCEEEEEEECCCCH-HHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9989986899999699848-99999999999886597799997366 No 34 >3dbi_A Sugar-binding transcriptional regulator, LACI family; structural genomics, protein structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12} Probab=83.81 E-value=2.5 Score=21.82 Aligned_cols=125 Identities=10% Similarity=0.092 Sum_probs=71.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 87179998031289999999999999998799555553-00144226999999863311378535665412000665246 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) -.||+++.+..+......=.+|+.+.+.+++...+... .++.+..-........-......+|++++. . T Consensus 181 ~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~----------~ 250 (338) T 3dbi_A 181 HQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVAS----------N 250 (338) T ss_dssp CCSEEEECCCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEEES----------S T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C T ss_conf 965999968988756999999999999985998665324137874677999988764148777401426----------8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC-------CCCCCCHHHHHHHHHHHHH Q ss_conf 7899999999999997439970565425588999999506-------5657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS-------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~-------~~~~nkG~eaa~Aal~mi~ 142 (149) |.++..+.+.+.+..+ .+|=-..|++.++...+.. .. ......|..|++.++++++ T Consensus 251 d~~a~g~~~~l~~~g~--~iP~DisIigfd~~~~~~~-~~p~ltti~~~~~~~g~~Av~~Ll~~i~ 313 (338) T 3dbi_A 251 DDMAIGAMKALHERGV--AVPEQVSVIGFDDIAIAPY-TVPALSSVKIPVTEMIQEIIGRLIFMLD 313 (338) T ss_dssp HHHHHHHHHHHHHTTC--CTTTTCEEEEESCCTTGGG-SSSCCEEEECCHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCCC--CCCCCEEEEEECCCHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHHHH T ss_conf 9999999999997599--8898759999788379882-3899629980999999999999999972 No 35 >3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, structural genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli K12} Probab=82.74 E-value=2.7 Score=21.55 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=36.0 Q ss_pred CEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 717999803--128999999999999999879955555300144226-99999986331137853566541 Q gi|254780346|r 6 PHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG 73 (149) ..|++|..+ ++......+++|..+.+.+.|.........+.-|.. -.++.+. +...||+|.++ T Consensus 20 ~~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~g~~l~l~~~~~~~~~~~~~l~~~~-----~~~~dgiIi~~ 85 (296) T 3brq_A 20 QTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLL-----DLRCDAIMIYP 85 (296) T ss_dssp CEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHH-----HTTCSEEEEEC T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEECC T ss_conf 9799995886646869999999999999985999999968999799999999999-----70987377526 No 36 >2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii} Probab=81.73 E-value=1.6 Score=22.89 Aligned_cols=39 Identities=8% Similarity=-0.013 Sum_probs=32.3 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH Q ss_conf 58717999803128999999999999999879955555300 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP 44 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP 44 (149) -+|||+||.++| .=|+.|.+.+.+-+.+.|++++.+.++ T Consensus 3 ~~~kvliiy~S~--GnT~~la~ai~~Ga~~~G~ev~~~~l~ 41 (199) T 2zki_A 3 CKPNILVLFYGY--GSIVELAKEIGKGAEEAGAEVKIRRVR 41 (199) T ss_dssp CCCEEEEEECCS--SHHHHHHHHHHHHHHHHSCEEEEEECC T ss_pred CCCEEEEEECCC--HHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 998699998183--589999999999887649889999766 No 37 >1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A Probab=81.59 E-value=3 Score=21.29 Aligned_cols=67 Identities=10% Similarity=0.123 Sum_probs=29.3 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEE-EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 7179998031289999999999999998799555-553001442269999998633113785356654 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWS-SIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVL 72 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~-~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaL 72 (149) .+|+.+....+.........+..+.+.+++.... ...+++.+....+...+..-.....++||++|. T Consensus 127 ~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~~ 194 (289) T 1dbq_A 127 REIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCG 194 (289) T ss_dssp CSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEES T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 63764378854305678887899999972899883079964665456999999998289998089988 No 38 >3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; HET: MSE; 2.88A {Vibrio parahaemolyticus} Probab=81.12 E-value=3.1 Score=21.19 Aligned_cols=123 Identities=14% Similarity=0.076 Sum_probs=55.1 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEE-EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 7179998031289999999999999998799555-553001442269999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWS-SIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~-~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .||+++.+.-+....+.-+.|+.+.+.+.+.... .+..++.+..-.+.+.+.+......++|++++. .| T Consensus 121 ~~i~~i~~~~~~~~~~~r~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~d 190 (275) T 3d8u_A 121 KNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCS----------HE 190 (275) T ss_dssp CCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEEES----------SH T ss_pred CEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEC----------CH T ss_conf 41520466864168999999999999974998761689604653056899999998750244322307----------88 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHH Q ss_conf 8999999999999974399705654255889999995065-------65745699999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMI 141 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi 141 (149) .++..+.+.+.+..+ .+|==..|++.++...+.- ..+ +...-|..|++.+++++ T Consensus 191 ~~A~g~~~~l~~~g~--~iP~di~vvg~d~~~~~~~-~~p~lttv~~~~~~~g~~av~~l~~~i 251 (275) T 3d8u_A 191 EIAIGALFECHRRVL--KVPTDIAIICLEGSSMGEH-AYPSLTSAEFDYERMGTKAAEKLLHAI 251 (275) T ss_dssp HHHHHHHHHHHHTTC--CTTTTCEEEESSCCHHHHT-SSSCCEEEECCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCC--CCCCEEEEEEECCHHHHHH-CCCCCEEEEECHHHHHHHHHHHHHHHH T ss_conf 999999999997388--7886069999788188872-589851998599999999999999996 No 39 >1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A* Probab=80.53 E-value=2.6 Score=21.69 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=32.0 Q ss_pred CCCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 587179998031289-9999999999999987995555530 Q gi|254780346|r 4 FIPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 4 ~~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) |.|||+||.+.=+++ .+..|.+.+.+.|.+.|.++++++. T Consensus 1 ~~KKvLII~aHP~~~S~~~al~~~~~~~l~~~G~eV~v~DL 41 (273) T 1d4a_A 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDL 41 (273) T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 98659999818998557999985107899978997999987 No 40 >3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcriptional regulator; 2.35A {Chloroflexus aggregans dsm 9485} Probab=80.37 E-value=3.3 Score=21.03 Aligned_cols=100 Identities=11% Similarity=0.166 Sum_probs=52.2 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE---EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 71799980312899999999999999987995555---530014422699999986331137853566541200066524 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS---IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~---i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) .||+++.+.-..........+..+.+.+.+..... ...+..++........+.......++||+++. T Consensus 126 r~I~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~~---------- 195 (287) T 3bbl_A 126 RRIAILAWPEDSRVGNDRLQGYLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMTL---------- 195 (287) T ss_dssp CCEEEEECCTTCHHHHHHHHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEES---------- T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEC---------- T ss_conf 0799924897762456666789999997299743120013567556899999999974667997599988---------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 67899999999999997439970565425588999 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQ 117 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~Q 117 (149) .|.++-.+.+.+.+..+ .+|--..|++.++..- T Consensus 196 ~d~~A~gv~~~l~~~g~--~vp~disvig~d~~~~ 228 (287) T 3bbl_A 196 NDTMAIGAMAAARERGL--TIGTDLAIIGFDDAPM 228 (287) T ss_dssp SHHHHHHHHHHHHHTTC--CBTTTBEEEEESCCTT T ss_pred CHHHHHHHHHHHHHCCC--CCCCCCEEECCCCHHH T ss_conf 77888999999998599--9886502330387689 No 41 >2ark_A Flavodoxin; FMN, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8 Probab=80.09 E-value=3.4 Score=20.97 Aligned_cols=41 Identities=15% Similarity=-0.001 Sum_probs=27.2 Q ss_pred CCCCEEEEEE-ECHHHHHHHHHHHHHHHHHHH-CCCCEEEEEHHH Q ss_conf 6587179998-031289999999999999998-799555553001 Q gi|254780346|r 3 VFIPHVLIIE-ARFYENLSAMLFEGCVNVLHS-RAVQWSSIVTPG 45 (149) Q Consensus 3 ~~~~kI~IV~-s~~~~~i~~~ll~ga~~~l~~-~~~~~~~i~VPG 45 (149) -.|+||+||+ |.+.. |+.|-+-..+.+.+ .|++.+...++. T Consensus 2 ~~M~kilIvY~S~~G~--T~~~A~~iaeg~~~~~g~~v~~~~~~~ 44 (188) T 2ark_A 2 NAMGKVLVIYDTRTGN--TKKMAELVAEGARSLEGTEVRLKHVDE 44 (188) T ss_dssp CCCEEEEEEECCSSSH--HHHHHHHHHHHHHTSTTEEEEEEETTT T ss_pred CCCCEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 9888599999899859--999999999854125695699975686 No 42 >2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A Probab=80.06 E-value=1.4 Score=23.27 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=64.5 Q ss_pred CEEEEEEECHHHHHH-HHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 717999803128999-999999999999879955555-300144226999999863311378535665412000665246 Q gi|254780346|r 6 PHVLIIEARFYENLS-AMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 6 ~kI~IV~s~~~~~i~-~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) .+++++......... ..-++|+.+.+.++|.+.... ..++.+....+.+.+.+-.....++||++|. . T Consensus 178 ~~~~~i~~~~~~~~~~~~R~~gf~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~----------~ 247 (332) T 2hsg_A 178 KNIAFVSGTLEEPINHAKKVKGYKRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIFVG----------T 247 (332) T ss_dssp SCEEEEESCTTSHHHHTTHHHHHHHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEEES----------S T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEC----------C T ss_conf 659999658778724999999999999983999880037717898799999999998369999579977----------3 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC------CCCCCCHHHHHHHHHHHHH Q ss_conf 7899999999999997439970565425588999999506------5657456999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS------PSHLDRGGCAARSALAMIE 142 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~------~~~~nkG~eaa~Aal~mi~ 142 (149) |.++-.+.+.+.+..+ .+|=-..|++.++...+..... ......|..|++.++++++ T Consensus 248 d~~A~g~~~al~~~g~--~iP~di~vvg~d~~~~~~~~~p~ltti~~~~~~~g~~Av~~L~~~i~ 310 (332) T 2hsg_A 248 DEMALGVIHGAQDRGL--NVPNDLEIIGFDNTRLSTMVRPQLTSVVQPMYDIGAVAMRLLTKYMN 310 (332) T ss_dssp HHHHHHHHHHHHHTTC--CHHHHCEEEEESCCGGGGSSSSCCEEEECCHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHCCC--CCCCCEEEEEECCCHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf 2999999999998499--99998699997886888830899569981999999999999999962 No 43 >3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1} Probab=79.94 E-value=3.4 Score=20.94 Aligned_cols=65 Identities=12% Similarity=0.171 Sum_probs=40.0 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH-H-HHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 8717999803128999999999999999879955555300-1-44226999999863311378535665412 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP-G-VLEIPAAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP-G-a~EiP~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) ++.|++|.+++.......+++|..+.+.+.|++.-...+. + .-+.--.+..++ +..+||+|..++ T Consensus 8 s~~Iglv~p~~~~~f~~~l~~gi~~~a~~~g~~l~v~~~~~~d~~~~~~~i~~l~-----~~~vdgiIi~~~ 74 (290) T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAI-----ERPVMGILLLSI 74 (290) T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC----------CHHHHHH-----SSCCSEEEEESC T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHH-----HCCCCEEEEEEC T ss_conf 9989999199987899999999999999859989999689999999999999998-----669878999713 No 44 >1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1 Probab=79.81 E-value=3.4 Score=20.92 Aligned_cols=33 Identities=3% Similarity=0.016 Sum_probs=16.6 Q ss_pred CEEEEEEECHHH-HHHHHHHHHHHHHHHHCCCCE Q ss_conf 717999803128-999999999999999879955 Q gi|254780346|r 6 PHVLIIEARFYE-NLSAMLFEGCVNVLHSRAVQW 38 (149) Q Consensus 6 ~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~~~~ 38 (149) .||++|....+. .....-.+|..+.+++++.+. T Consensus 116 ~~I~~i~~~~~~~~~~~~R~~g~~~~~~~~~i~~ 149 (255) T 1byk_A 116 RNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHP 149 (255) T ss_dssp CCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCC T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCC T ss_conf 5699777785655278999999999999869984 No 45 >1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A* Probab=78.85 E-value=3.7 Score=20.73 Aligned_cols=67 Identities=9% Similarity=0.152 Sum_probs=42.2 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 717999803128999999999999999879955555300144226999999863311378535665412 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) .++++|...-....-..+.+|+.+..+++|+....+..+.-....--.+.+ +. ..+.++||+|..+. T Consensus 2 ~~~avi~~~~~npf~~~~~~g~~~~a~~~G~~~~~~~~~~~~d~~~q~~~i-~~-~i~~~~Dgii~~~~ 68 (288) T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLF-ED-LSNKNYKGIAFAPL 68 (288) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHH-HH-HHTSSEEEEEECCS T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHH-HH-HHHCCCCEEEEECC T ss_conf 679999798988899999999999999749979999758989999999999-99-99659998997335 No 46 >3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str} Probab=78.38 E-value=3.8 Score=20.65 Aligned_cols=36 Identities=11% Similarity=0.027 Sum_probs=21.0 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 717999803128999999999999999879955555 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) .-|++|...+.......++++..+.+.+.|+..-.. T Consensus 16 ~~Igvi~p~~~~~f~~~ll~~i~~~a~~~gy~l~l~ 51 (303) T 3kke_A 16 GTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLG 51 (303) T ss_dssp -CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 989999699987799999999999999769989999 No 47 >2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Probab=78.37 E-value=2.2 Score=22.08 Aligned_cols=123 Identities=16% Similarity=0.089 Sum_probs=62.5 Q ss_pred CCEEEEEEEC-----HHHHHHHHHHHHHHHHHHHCCCCEEEE---EHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 8717999803-----128999999999999999879955555---30014422699-99998633113785356654120 Q gi|254780346|r 5 IPHVLIIEAR-----FYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 5 ~~kI~IV~s~-----~~~~i~~~ll~ga~~~l~~~~~~~~~i---~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG~V 75 (149) -.||+++... .+......-+.|..+.+.++|.+.+.. ..+...+.... ++.++ ....+++++++.. T Consensus 114 ~~~i~~i~~~~~~~~~~~~~~~~R~~Gf~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~aii~~~-- 188 (276) T 2h0a_A 114 GPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPFSPDRLYITRHSQEGGRLALRHFL---EKASPPLNVFAGA-- 188 (276) T ss_dssp SCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHH---TTCCSSEEEECSS-- T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHCCCCCEEEECC-- T ss_conf 96269982478750123048999999999999980999771011111111157999999988---6356776899677-- Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH----CCCCCCCHHHHHHHHHHHHH Q ss_conf 00665246789999999999999743997056542558899999950----65657456999999999999 Q gi|254780346|r 76 MRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV----SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 76 IkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~----~~~~~nkG~eaa~Aal~mi~ 142 (149) |.++-.+.+.+.+..+ .+|=-..|++.++...+..=. .......|+.|++.++++++ T Consensus 189 --------d~~a~g~~~al~~~g~--~vp~~i~vvg~D~~~~~~~~~ltti~~~~~~~g~~av~~l~~~i~ 249 (276) T 2h0a_A 189 --------DQVALGVLEEAVRLGL--TPGRDVRVLGFDGHPFAEEAGLSTIAQPVEAMGARAAQLLLERMR 249 (276) T ss_dssp --------HHHHHHHHHHHHTTSC--TTTTSEEEEEESCCTHHHHHTCEEEECCHHHHHHHHHHHHHHHHT T ss_pred --------HHHHHHHHHHHHHCCC--CCCCCCCEEECCCCHHHCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf --------7999999999998699--889653114227838873889629982999999999999999964 No 48 >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Probab=78.17 E-value=3.8 Score=20.61 Aligned_cols=66 Identities=6% Similarity=-0.028 Sum_probs=39.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEE---EEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031289999999999999998799555---5530014422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWS---SIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~---~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+||+|+.+.-| ..-|.+.+|..+.|++.|+... .+... +=.=|......++. -...++|++++.| T Consensus 2 ~~kigv~~~~~~-p~~d~~~~Gi~~~l~~~G~~~~~v~~~~~~-a~~d~~~~~~~~~~-l~~~~~D~Ii~~~ 70 (295) T 3lft_A 2 NAKIGVLQFVSH-PSLDLIYKGIQDGLAEEGYKDDQVKIDFMN-SEGDQSKVATMSKQ-LVANGNDLVVGIA 70 (295) T ss_dssp CEEEEEEECSCC-HHHHHHHHHHHHHHHHTTCCGGGEEEEEEE-CTTCHHHHHHHHHH-HTTSSCSEEEEES T ss_pred CCEEEEEECCCC-HHHHHHHHHHHHHHHHCCCCCCEEEEEEEC-CCCCHHHHHHHHHH-HHCCCCCEEEECC T ss_conf 955999967676-789999999999999659986607999977-98899999999999-8525888899669 No 49 >3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482} Probab=78.07 E-value=3.3 Score=20.98 Aligned_cols=113 Identities=7% Similarity=-0.008 Sum_probs=60.1 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHHHHHHHHHHHHHH-HHCCCCCCEEEEEEEEE Q ss_conf 58717999803128999999999999999879955555300------144226999999863-31137853566541200 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVLEIPAAVSMVMNA-KTRSVTYDGIIVLGVVM 76 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~EiP~a~~~~~~~-~~~~~~~D~vIaLG~VI 76 (149) |.+||+|+...-+++. =+-+..+.|.+.|++++++.+. ++.-++......+.. .....+||++|.-|-.. T Consensus 1 M~KkVavl~~~~~~~~---e~~~~~~~f~~~g~~~~v~sv~~~~~v~~~~G~~v~~d~~l~~~~~~~~~~D~liipGG~~ 77 (175) T 3cne_A 1 MAKKVAVLAVNPVNGC---GLFQYLEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDA 77 (175) T ss_dssp -CCEEEEEECSSBCHH---HHHHHHHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTT T ss_pred CCCEEEEEECCCCEEH---HHHHHHHHHHHCCCEEEEEEECCCCCEECCCCCEEECCEEHHHCCCCCCCCCEEEECCCCC T ss_conf 9967999948994846---8999999999789929999988999777699988952422431467756778899999777 Q ss_pred C-CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC Q ss_conf 0-6652467899999999999997439970565425588999999506 Q gi|254780346|r 77 R-GKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 (149) Q Consensus 77 k-GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~ 123 (149) - .--.|...-.+.-...+.+-..+.+.||. + ++ +--..+.+++ T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~g~~i~-a-iC--~g~~~La~ag 121 (175) T 3cne_A 78 VPVFQQYANQPYNVDLMEVIKTFGEKGKMMI-G-HC--AGAMMFDFTG 121 (175) T ss_dssp GGGGGGCTTCHHHHHHHHHHHHHHHTTCEEE-E-ET--THHHHHHHTT T ss_pred CHHCCCCCCCCCCHHHHHHHHHHHHCCCEEE-E-EC--CHHHHHHHCC T ss_conf 0122655444369999999999998499899-9-88--2058899769 No 50 >3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} Probab=77.13 E-value=0.92 Score=24.45 Aligned_cols=98 Identities=7% Similarity=0.029 Sum_probs=59.0 Q ss_pred CCEEEEEEECHHHHHHH---------HHHHHHHHHHHHCCCCEEEEEHHHHHH-----H--HH-----HH---------- Q ss_conf 87179998031289999---------999999999998799555553001442-----2--69-----99---------- Q gi|254780346|r 5 IPHVLIIEARFYENLSA---------MLFEGCVNVLHSRAVQWSSIVTPGVLE-----I--PA-----AV---------- 53 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~---------~ll~ga~~~l~~~~~~~~~i~VPGa~E-----i--P~-----a~---------- 53 (149) .+|++||.+++|.+.-+ .=+-...+.|.+.|++++.....|-.. . +. .. T Consensus 3 ~kkvLiv~ts~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~~aSp~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (244) T 3kkl_A 3 PKRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFN 82 (244) T ss_dssp CCEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSSCCCBCTTC--------------------CH T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHCCCHHHHHHHHHCHHHH T ss_conf 87599998468765678987472459999999999998799799980799987876668444326657778765058787 Q ss_pred HHHHHH----HHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 999863----31137853566541200066524678999999999999974399705 Q gi|254780346|r 54 SMVMNA----KTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIG 106 (149) Q Consensus 54 ~~~~~~----~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~ 106 (149) ..+-.. .-...+||+++..|- --.-+++..+.....+.+-..+.++||+ T Consensus 83 ~~l~~~~~~~~v~~~~ydav~~pGG----~g~~~dl~~~~~l~~l~~~~~~~~k~va 135 (244) T 3kkl_A 83 KALARIKTANEVNASDYKVFFASAG----HGALFDYPKAKNLQDIASKIYANGGVIA 135 (244) T ss_dssp HHHHTCEEGGGCCGGGCSEEEECCS----TTHHHHGGGCHHHHHHHHHHHHTTCEEE T ss_pred HHHHCCCCHHHCCHHHCEEEEECCC----CCCCCCCHHHHHHHHHHHHHHHCCCEEE T ss_conf 7875548866789857518997598----6331222122568999999984798399 No 51 >3ksm_A ABC-type sugar transport system, periplasmic component; PSI- II, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis kctc 2396} Probab=76.81 E-value=4.2 Score=20.37 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=41.0 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) |||++|...-....-..+.+|+.+.+++.|++...+....-.+..--.+.+-+. -...++||+|.-+ T Consensus 1 pkI~~i~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~q~~~i~~~-l~~~~~Dgiii~~ 67 (276) T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYH-LSQAPPDALILAP 67 (276) T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHH-HHHSCCSEEEECC T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCCEEEEEC T ss_conf 989999599999999999999999999829999999589986899999999999-9827998999927 No 52 >2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G* Probab=76.56 E-value=4.3 Score=20.33 Aligned_cols=66 Identities=14% Similarity=0.096 Sum_probs=44.7 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHH-HHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 587179998031289999999999999998799555553001442269-99999863311378535665412 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPA-AVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~-a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) .++-|+||........-..|+++..+.+.+.|+........+..|-.. .++.+. +...||+|..+. T Consensus 15 ks~tIGvivp~l~~~f~~~l~~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l~-----~~~vdgiIi~~~ 81 (289) T 2fep_A 15 KTTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNSDQNMEKELHLLNTML-----GKQVDGIVFMGG 81 (289) T ss_dssp -CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEECCS T ss_pred HHCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEEC T ss_conf 3599999968788989999999999999986998999968999799999999999-----639874799631 No 53 >3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, protein structure initiative; 2.14A {Rhodococcus jostii RHA1} Probab=76.27 E-value=4.3 Score=20.28 Aligned_cols=63 Identities=14% Similarity=0.093 Sum_probs=31.3 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 717999803128999999999999999879955555300144226999999863311378535665412 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) .-|+||. .+....-..+++|..+.+.+.|++.-.......-+---.++.++ +..+||+|..+. T Consensus 13 ~~IGvv~-~~~~pf~~~l~~~i~~~a~~~g~~v~l~~~~~~~~~~~~~~~l~-----~~~vdgiIi~~~ 75 (289) T 3k9c_A 13 RLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALM-----RERCEAAILLGT 75 (289) T ss_dssp CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHT-----TTTEEEEEEETC T ss_pred CEEEEEE-CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HCCCCEEEEECC T ss_conf 8899995-38876999999999999998599899993899889999999999-----729988999505 No 54 >2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli} Probab=75.51 E-value=4.5 Score=20.15 Aligned_cols=28 Identities=7% Similarity=0.132 Sum_probs=13.7 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHC Q ss_conf 1799980312899999999999999987 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSR 34 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~ 34 (149) +|+++...-....+..-.+|+.+.+.+. T Consensus 130 ~i~~~~g~~~~~~~~~R~~g~~~~l~~~ 157 (306) T 2vk2_A 130 NVVELQGTVGASVAIDRKKGFAEAIKNA 157 (306) T ss_dssp EEEEEECSTTCHHHHHHHHHHHHHTTTC T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC T ss_conf 3886327777608999999999999866 No 55 >2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron} Probab=75.23 E-value=4.6 Score=20.11 Aligned_cols=125 Identities=11% Similarity=0.007 Sum_probs=71.4 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 717999803128999999999999999879955555-3001442269999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .+++++...-.......-..|+.+.+.+++ ..+.+ ...+.|+...+.+.+........++|++++. .| T Consensus 129 ~~v~~i~g~~~~~~~~~r~~gf~~~l~~~~-~~~~v~~~~~~~~~~~~~~~~~~lL~~~pdi~aI~~~----------nD 197 (325) T 2x7x_A 129 GNIVELTGLSGSTPAMERHQGFMAAISKFP-DIKLIDKADAAWERGPAEIEMDSMLRRHPKIDAVYAH----------ND 197 (325) T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCT-EEEEEEEEECTTSHHHHHHHHHHHHHHCSCCCEEEES----------ST T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHCC-CCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCEEEEC----------CC T ss_conf 428996278875089999999999999779-9853668516765489999999974138888779856----------83 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEE---CCCCHHHHHHHHCCC----CCCCHHHHHHHHHHHHH Q ss_conf 89999999999999743997056542---558899999950656----57456999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIV---VVDSEQQAFDRVSPS----HLDRGGCAARSALAMIE 142 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gIL---t~~n~~QA~~R~~~~----~~nkG~eaa~Aal~mi~ 142 (149) .++-.+.+++.+..+..++.| .|+= .....-+++...... .--.|..+++.++++++ T Consensus 198 ~~a~Ga~~Al~~~G~~~~i~v-vG~D~~~~~~~~l~~i~~g~i~atv~q~~~G~~av~~~~~~l~ 261 (325) T 2x7x_A 198 RIAPGAYQAAKMAGREKEMIF-VGIDALPGKGNGLELVLDSVLDATFIYPTNGDKVLQLAMDILE 261 (325) T ss_dssp THHHHHHHHHHHTTCTTSSEE-EEEECCCSTTSHHHHHHTTSCSEEEECCCCHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHCCCCCCEEE-EEECCCHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHC T ss_conf 899999999997699999399-9989974579999998748855999681899999999999977 No 56 >3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A* Probab=74.57 E-value=4.8 Score=20.01 Aligned_cols=99 Identities=12% Similarity=0.123 Sum_probs=54.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 58717999803128999999999999999879955555300144226999999863311378535665412000665246 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) .|++|+||.-.-.+.. .+ ..+.|.+.|+.++++.+.-.=.+|. .-.+|||+|..|-= -+-++.+ T Consensus 2 ~mk~vlv~qh~~~e~~--g~---~~~~l~~~g~~~~v~~~~~~~~~P~----------~~~~~dglii~Gg~-~~~~d~~ 65 (250) T 3m3p_A 2 SLKPVMIIQFSASEGP--GH---FGDFLAGEHIPFQVLRMDRSDPLPA----------EIRDCSGLAMMGGP-MSANDDL 65 (250) T ss_dssp CCCCEEEEESSSSCCC--HH---HHHHHHHTTCCEEEEEGGGTCCCCS----------CGGGSSEEEECCCS-SCTTSCC T ss_pred CCCEEEEEECCCCCCC--HH---HHHHHHHCCCEEEEEECCCCCCCCC----------CHHHCCEEEECCCC-CCCCCCC T ss_conf 9864999957999981--39---9999985899799997899987877----------76338989990999-8777877 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC Q ss_conf 78999999999999974399705654255889999995065 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~ 124 (149) .++.. ...+.+-.++.++|+.--=+ --|.+.++-+ T Consensus 66 p~~~~--~~~~i~~~~~~~~PilGIC~----G~Qlla~alG 100 (250) T 3m3p_A 66 PWMPT--LLALIRDAVAQRVPVIGHCL----GGQLLAKAMG 100 (250) T ss_dssp TTHHH--HHHHHHHHHHHTCCEEEETH----HHHHHHHHTT T ss_pred HHHHH--HHHHHHHHHHCCCCEEEEEH----HHHHHHHCCC T ss_conf 65899--99999999975998899856----5678985159 No 57 >3brs_A Periplasmic binding protein/LACI transcriptional regulator; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans isdg} Probab=74.54 E-value=4.8 Score=20.00 Aligned_cols=31 Identities=13% Similarity=-0.063 Sum_probs=13.3 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 1799980312899999999999999987995 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQ 37 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~ 37 (149) ||+++...-+......-.+|+.+.|++.+.+ T Consensus 133 ~i~~i~~~~~~~~~~~R~~g~~~~l~~~~~~ 163 (289) T 3brs_A 133 KIGVISFVKNSKTAMDREEGLKIGLSDDSNK 163 (289) T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHGGGGGG T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHCCCC T ss_conf 6999957778840989999999999865996 No 58 >3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} Probab=74.42 E-value=4.8 Score=19.98 Aligned_cols=102 Identities=14% Similarity=0.052 Sum_probs=61.7 Q ss_pred CCCCCCEEEEEEECHHHHHH----------HHHHHHHHHHHHHCCCCEEEEEHHH-------HHHHHH----H------- Q ss_conf 96658717999803128999----------9999999999998799555553001-------442269----9------- Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLS----------AMLFEGCVNVLHSRAVQWSSIVTPG-------VLEIPA----A------- 52 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~----------~~ll~ga~~~l~~~~~~~~~i~VPG-------a~EiP~----a------- 52 (149) |.-+.+|++||++..+..+- .. +-.....|.+.|+++++...-| ++.-.. . T Consensus 5 ~~p~~kkvLivvts~~~~~~~~g~~TG~~l~E-~~~P~~~l~~aG~eV~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~ 83 (247) T 3n7t_A 5 MAPLPRKALLAITSAHPPFWPDGKRTGLFFSE-ALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSE 83 (247) T ss_dssp --CCCSEEEEECCCCCCBCSTTSCBCCBCHHH-HHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCS T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCCCCCHHH-HHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHCCCCHHHHHHHHH T ss_conf 79988628999957886667899855457999-99999999977996999768998887877765100471678999864 Q ss_pred ----HHHHHHH-----HHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf ----9999863-----311378535665412000665246789999999999999743997056 Q gi|254780346|r 53 ----VSMVMNA-----KTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 53 ----~~~~~~~-----~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) ....+.. .....+||+++.-| |-=.-+++..+.....|.+--.+.+.||+- T Consensus 84 ~~~~~~~~~~~~~~~~~v~~~~ydav~~pG----G~g~~~dl~~~~~l~~li~~~~~~~k~vaa 143 (247) T 3n7t_A 84 HNHFMEKMNKQVFKAGDLAPHDYGLMFVCG----GHGALYDFPHAKHLQNIAQDIYKRGGVIGA 143 (247) T ss_dssp SCHHHHHHHHCCEEGGGSCGGGCSEEEECC----STTHHHHGGGCHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHHHHHCCCCHHHCCHHHCCEEEECC----CCCHHHHHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 426654233056886778986778899479----875676024407899999999964990999 No 59 >1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ... Probab=72.17 E-value=5.5 Score=19.65 Aligned_cols=121 Identities=10% Similarity=0.076 Sum_probs=70.8 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 8717999803128999999999999999879955555-30014422699-999986331137853566541200066524 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) -.||++|.+.-.......-+.|+.+.+.+++.+...+ .....+|--.. ...++ ....++|++++. T Consensus 179 ~rrI~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll---~~~~~~~ai~~~---------- 245 (349) T 1jye_A 179 HQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQML---NEGIVPTAMLVA---------- 245 (349) T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEEECCSSHHHHHHHHHHHH---HTTCCCSEEEES---------- T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHH---HCCCCCCEEECC---------- T ss_conf 9748995277432289998999999999759997515635764655899999997---259998356438---------- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHH Q ss_conf 678999999999999974399705654255889999995065-------65745699999999999 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMI 141 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi 141 (149) .|..+..+.+.+.+..+ .+|=-..|++.++...+.. ..+ +...-|..|++.+++++ T Consensus 246 ~d~~A~g~~~~l~~~g~--~vP~di~vig~d~~~~~~~-~~p~ltti~~~~~~~g~~Av~~L~~~i 308 (349) T 1jye_A 246 NDQMALGAMRAITESGL--RVGADISVVGYDDTEDSSC-YIPPLTTIKQDFRLLGQTSVDRLLQLS 308 (349) T ss_dssp SHHHHHHHHHHHHHTTC--CBTTTBEEECSBCCGGGGG-SSSCCBEEECCHHHHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHCC--CCCCCEEEEEECCCHHHHH-HCCCCEEEECCHHHHHHHHHHHHHHHH T ss_conf 84999999999998189--7899859999688288994-089955997699999999999999986 No 60 >1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A* Probab=71.81 E-value=4.3 Score=20.32 Aligned_cols=33 Identities=15% Similarity=0.287 Sum_probs=26.1 Q ss_pred CCEEEEEEECHHH--HHHHHHHHHHHHHHHHCCCC Q ss_conf 8717999803128--99999999999999987995 Q gi|254780346|r 5 IPHVLIIEARFYE--NLSAMLFEGCVNVLHSRAVQ 37 (149) Q Consensus 5 ~~kI~IV~s~~~~--~i~~~ll~ga~~~l~~~~~~ 37 (149) |+||+++.++-.. -.+..|.+-+.+.+.+.+.. T Consensus 1 M~kiL~i~gS~r~~~S~s~~L~~~f~~~~~~~~~~ 35 (201) T 1t5b_A 1 MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVA 35 (201) T ss_dssp CCEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTT T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC T ss_conf 97289997789998689999999999999975989 No 61 >2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2 Probab=71.60 E-value=3.5 Score=20.89 Aligned_cols=95 Identities=9% Similarity=0.021 Sum_probs=51.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE--------HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 587179998031289999999999999998799555553--------001442269999998633113785356654120 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV--------TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~--------VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) |+++++|+.+.=.+++ =+-+..+.|.+.|++++.+. |.|+.-++......+.. ....+||+++.-|- T Consensus 1 M~k~vlv~l~~Gfe~~---E~~~p~dvL~rag~~v~~~s~~~~~~~~V~~~~g~~i~~d~~~~d-~~~~d~D~liiPGG- 75 (205) T 2ab0_A 1 MSASALVCLAPGSEET---EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVE-VADGEYDVIVLPGG- 75 (205) T ss_dssp -CCEEEEEECTTCCHH---HHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHH-HTTSCCSEEEECCC- T ss_pred CCCEEEEEECCCCHHH---HHHHHHHHHHHCCCEEEEEEEECCCCCEEEECCCCEEECCCCHHH-CCCCCCCEEEECCC- T ss_conf 9943999955991099---999999999988998999977179984589379988916888788-99568738998999- Q ss_pred ECCCCCHHHHH-HHHHHHHHHHHHHHCCCCCEE Q ss_conf 00665246789-999999999999743997056 Q gi|254780346|r 76 MRGKTAHCDVI-AHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 76 IkGeT~H~e~I-~~~v~~gl~~lsl~~~~PI~~ 107 (149) . ...+.. .+.-...+.+-..+.+.+|+- T Consensus 76 ---~-~~~~~l~~~~~l~~~lr~~~~~gk~i~a 104 (205) T 2ab0_A 76 ---I-KGAECFRDSTLLVETVKQFHRSGRIVAA 104 (205) T ss_dssp ---H-HHHHHHHHCHHHHHHHHHHHHTTCEEEE T ss_pred ---C-HHHHHHHHCHHHHHHHHHHHHHCCEEEE T ss_conf ---7-1798861299999999999873530450 No 62 >2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix; 1.90A {Lactococcus lactis} Probab=71.58 E-value=5.7 Score=19.57 Aligned_cols=122 Identities=12% Similarity=0.065 Sum_probs=71.6 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE---EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 8717999803128999999999999999879955555---3001442269999998633113785356654120006652 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i---~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) -.||++|...........-+.|+.+.+.+++.+.+.. ..+-..+........+. ..+++++++. T Consensus 180 ~~ri~~i~~~~~~~~~~~R~~gf~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~i~~~--------- 246 (332) T 2o20_A 180 NKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLL----ERGATSAVVS--------- 246 (332) T ss_dssp CSSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHH----HTTCCEEEES--------- T ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHH----HCCCCEEEEE--------- T ss_conf 985117627866506889999999999985999995369955630678999999964----3146538984--------- Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 46789999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) .|..+-.+.+++.+.. ..+|=-..|++.++...+..-. .......|..|++.++++++ T Consensus 247 -~d~~A~g~~~al~~~g--~~vp~dv~vig~d~~~~~~~~~p~lttv~~~~~~~g~~Av~~L~~~i~ 310 (332) T 2o20_A 247 -HDTVAVGLLSAMMDKG--VKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLML 310 (332) T ss_dssp -CHHHHHHHHHHHHHTT--CCTTTTCEEEESSCCGGGGSBSSCCEEEECCHHHHHHHHHHHHHHHHT T ss_pred -CHHHHHHHHHHHHHCC--CCCCCCEEEEEECCHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf -3899999999999829--877898799996882899831899639982999999999999999961 No 63 >3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi} Probab=70.69 E-value=5.9 Score=19.44 Aligned_cols=125 Identities=11% Similarity=0.069 Sum_probs=75.5 Q ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHHHHHCCCCEEEE-EH---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC Q ss_conf 8717999803128-999999999999999879955555-30---014422699999986331137853566541200066 Q gi|254780346|r 5 IPHVLIIEARFYE-NLSAMLFEGCVNVLHSRAVQWSSI-VT---PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGK 79 (149) Q Consensus 5 ~~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~~~~~~i-~V---PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGe 79 (149) -.+|+++.+.-.. .....-+.|+.+.+.+++...+.. .. +..++-...+.. .......++||++|. T Consensus 187 ~r~i~~l~~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ai~~~------- 257 (355) T 3e3m_A 187 FRKIVFLGEKDDDWTRGAARRAGFKRAMREAGLNPDQEIRLGAPPLSIEDGVAAAE--LILQEYPDTDCIFCV------- 257 (355) T ss_dssp CCSEEEEEESSCTTSHHHHHHHHHHHHHHHTTSCSCCEEEESCSSCCHHHHHHHHH--HHHHHCTTCCEEEES------- T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCHHHHHHHHHHH--HHHHCCCCCCEEEEC------- T ss_conf 96299995788777409999871699999859994210022445302344566655--687538999768856------- Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHHH Q ss_conf 5246789999999999999743997056542558899999950------656574569999999999999 Q gi|254780346|r 80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIEL 143 (149) Q Consensus 80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~l 143 (149) .|.++-.+.+.+.+..+ .+|=-..|++.++.+.+..-. ......-|..|++.++++++- T Consensus 258 ---~d~~A~g~~~~l~~~g~--~vP~disVig~D~~~~~~~~~p~lttv~~~~~~~G~~Ave~L~~~l~~ 322 (355) T 3e3m_A 258 ---SDMPAFGLLSRLKSIGV--AVPEQVSVVGFGNFEVSRFASPEISTVRVDPIAIGRETGSLILRLLDP 322 (355) T ss_dssp ---SHHHHHHHHHHHHHHTC--CTTTTCEEECSSCCHHHHHSSSCCBEEECCHHHHHHHHHHHHHHHTC- T ss_pred ---CHHHHHHHHHHHHHCCC--CCCCCEEEEEECCCHHHHHCCCCCEEEEECHHHHHHHHHHHHHHHHCC T ss_conf ---77999999999998599--999843999977848998238996499969999999999999998558 No 64 >2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Probab=70.58 E-value=6 Score=19.43 Aligned_cols=104 Identities=14% Similarity=0.138 Sum_probs=60.0 Q ss_pred CCCCCEEEEEEECHH-HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 665871799980312-8999999999999999879955555300144226999999863311378535665412000665 Q gi|254780346|r 2 EVFIPHVLIIEARFY-ENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 2 ~~~~~kI~IV~s~~~-~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) .+|.+|++||.=..= ..=....++...+.|...|++++.+.+...-+..-.++.. ....||.+|+.| ||- T Consensus 21 ~~m~kr~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~T~~~g~a~~~a~~~-----~~~~~d~IVv~G----GDG 91 (337) T 2qv7_A 21 HMMRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERA-----MHENYDVLIAAG----GDG 91 (337) T ss_dssp CSCCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHH-----TTTTCSEEEEEE----CHH T ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH-----HHCCCCEEEEEC----CCH T ss_conf 45663599999988898757999999999999879969999828922699999998-----777999999990----656 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC Q ss_conf 24678999999999999974399705654255889999995065 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~ 124 (149) --+++.++|+ +....+-.|||-..+.. .+.|+-+ T Consensus 92 -----Tv~ev~~gl~----~~~~~~plgiiP~GTgN-~~Ar~lg 125 (337) T 2qv7_A 92 -----TLNEVVNGIA----EKPNRPKLGVIPMGTVN-DFGRALH 125 (337) T ss_dssp -----HHHHHHHHHT----TCSSCCEEEEEECSSCC-HHHHHTT T ss_pred -----HHHHHHHHHH----HHCCCCEEEEECCCCCC-CEEEECC T ss_conf -----9999999998----61679618995499998-1316046 No 65 >3keg_A FMN-dependent NADH-azoreductase 1; Y131F azoreductase, methyl RED, flavoprotein, oxidoreductase; HET: FMN MRE GOL; 2.10A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* Probab=70.05 E-value=4.3 Score=20.29 Aligned_cols=37 Identities=14% Similarity=0.074 Sum_probs=28.8 Q ss_pred CCEEEEEEECHHHH--HHHHHHHHHHHHHHHCC--CCEEEE Q ss_conf 87179998031289--99999999999999879--955555 Q gi|254780346|r 5 IPHVLIIEARFYEN--LSAMLFEGCVNVLHSRA--VQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~~--i~~~ll~ga~~~l~~~~--~~~~~i 41 (149) |+||++|.++-..+ .+..|.+.+.+.+++.+ .+++.+ T Consensus 1 M~kILvI~gspr~~~S~s~~l~~~~~~~~~~~~~~~ev~~~ 41 (212) T 3keg_A 1 MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARR 41 (212) T ss_dssp -CEEEEEECCSCSTTCHHHHHHHHHHHHHHHHSTTCEEEEE T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 97599998389988778999999999999961999889999 No 66 >3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein structure initiative, structural genomics; 1.97A {Lactobacillus brevis atcc 367} Probab=69.80 E-value=6.2 Score=19.32 Aligned_cols=65 Identities=22% Similarity=0.253 Sum_probs=42.8 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 58717999803128999999999999999879955555300144226-99999986331137853566541 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .++.|+++...........++.|..+.+.+.|+..-.....+..+.- -.++.+. +..+||+|..+ T Consensus 6 ~S~~Igvivp~~~~~f~~~~i~gi~~~~~~~gy~~~i~~~~~~~~~~~~~i~~l~-----~~~vdgiIl~~ 71 (276) T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANADIEREKTLLRAIG-----SRGFDGLILQS 71 (276) T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHH-----TTTCSEEEEES T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEEC T ss_conf 8999999939998989999999999999986999999948999899999999999-----66998999953 No 67 >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Probab=69.01 E-value=6.4 Score=19.22 Aligned_cols=63 Identities=11% Similarity=0.074 Sum_probs=37.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 871799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||..+--. +...+...+.|++.++.+..+..|+.-..-.. ..... ....++|.+|++| T Consensus 34 ~~k~liVtd~~~~---~~~~~~v~~~L~~~~i~~~~~~~~~~~~~~~~-~~~~~--~~~~~~D~IIavG 96 (354) T 3ce9_A 34 FKRVSLYFGEGIY---ELFGETIEKSIKSSNIEIEAVETVKNIDFDEI-GTNAF--KIPAEVDALIGIG 96 (354) T ss_dssp CSEEEEEEETTHH---HHHHHHHHHHHHTTTCEEEEEEEECCCBHHHH-HHHHT--TSCTTCCEEEEEE T ss_pred CCEEEEEECCCHH---HHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH-HHHHH--HHHCCCCEEEEEC T ss_conf 8959999896788---99999999999877998999858999998999-99999--8652688899946 No 68 >1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} SCOP: c.24.1.2 Probab=67.75 E-value=6.8 Score=19.06 Aligned_cols=106 Identities=8% Similarity=0.044 Sum_probs=58.1 Q ss_pred CCEEEEEEECHHH-HH---HHHHH-----------HHHHHHHHHC-CCCEEEEEHHHHHH-HHHHHHHHHHHHHCCCCCC Q ss_conf 8717999803128-99---99999-----------9999999987-99555553001442-2699999986331137853 Q gi|254780346|r 5 IPHVLIIEARFYE-NL---SAMLF-----------EGCVNVLHSR-AVQWSSIVTPGVLE-IPAAVSMVMNAKTRSVTYD 67 (149) Q Consensus 5 ~~kI~IV~s~~~~-~i---~~~ll-----------~ga~~~l~~~-~~~~~~i~VPGa~E-iP~a~~~~~~~~~~~~~~D 67 (149) |++|++|..+=-+ ++ ...+. .|.-+.|.++ |++++.+. .|... -|-.+.++. +++.| T Consensus 1 ~k~ialiAhD~dK~~l~~~a~~~~~ll~gf~i~AT~GTa~~L~~~~gi~v~~v~-k~~~gg~p~i~d~I~-----~g~I~ 74 (126) T 1wo8_A 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVL-SGPLGGDLQIGARVA-----EGKVL 74 (126) T ss_dssp CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECC-CTTTTHHHHHHHHHH-----TTCEE T ss_pred CCEEEEEEHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHCCCEEEEEE-ECCCCCCCCHHHHHH-----CCCCC T ss_conf 954899830067699999999999997497599603299999983496489997-458899989999998-----59977 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 5665412000665246789999999999999743997056542558899999950 Q gi|254780346|r 68 GIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 68 ~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .||-+ .+++...-...-...|.+.++++++|+...+=|+.-.-++++|- T Consensus 75 lVIn~------~~~~~~~~~~~D~~~IRR~a~~~~IP~~T~~~~A~a~v~al~~g 123 (126) T 1wo8_A 75 AVVFL------QDPLTAKPHEPDVQALMRVCNVHGVPLATNLVAAEALIAWIRKG 123 (126) T ss_dssp EEEEE------CCTTSCCTTHHHHHHHHHHHHHTTCCEECSHHHHHHHHHHHHHT T ss_pred EEEEE------CCCCCCCCCCHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 89980------69888864500089999999973998897899999999999826 No 69 >1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2 Probab=67.03 E-value=2.2 Score=22.16 Aligned_cols=96 Identities=8% Similarity=0.108 Sum_probs=55.5 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHHH-HHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 6658717999803128999999999999999879955555300------1442-26999999863311378535665412 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVLE-IPAAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~E-iP~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) .-|.+||+|+.++-.++. =+-...+.|.+.|+++..+... |..- ++..+...+.. ....+||+++.-|- T Consensus 20 ~~M~kkVaill~dgf~~~---E~~~p~~~l~~aG~~v~~vs~~~~~~v~~~~g~~~v~~d~~l~d-v~~~~yDaliiPGG 95 (193) T 1oi4_A 20 AGLSKKIAVLITDEFEDS---EFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDE-VTPAEFDALLLPGG 95 (193) T ss_dssp TTCCCEEEEECCTTBCTH---HHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGG-CCGGGCSEEEECCB T ss_pred CCCCCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCEEEECCCCHHH-CCHHHCCEEEECCC T ss_conf 089877999957976299---99999999996899899996799974473789978955773899-89624939998998 Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 00066524678999999999999974399705 Q gi|254780346|r 75 VMRGKTAHCDVIAHAVTRGLVDLSINGSLPIG 106 (149) Q Consensus 75 VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~ 106 (149) .|- ..+..+.-...+.+-..+.+.||+ T Consensus 96 --~~~---~~l~~~~~l~~~l~~~~~~~k~i~ 122 (193) T 1oi4_A 96 --HSP---DYLRGDNRFVTFTRDFVNSGKPVF 122 (193) T ss_dssp --THH---HHHTTSHHHHHHHHHHHHTTCCEE T ss_pred --CCH---HHHHHCHHHHHHHHHHHHHCCEEE T ss_conf --308---676319588999999886066034 No 70 >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* Probab=66.61 E-value=5.1 Score=19.86 Aligned_cols=88 Identities=10% Similarity=0.171 Sum_probs=59.0 Q ss_pred HHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH-------HHHHHHHHHHHHH Q ss_conf 99999879955555--30014422699999986331137853566541200066524678-------9999999999999 Q gi|254780346|r 28 VNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV-------IAHAVTRGLVDLS 98 (149) Q Consensus 28 ~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~-------I~~~v~~gl~~ls 98 (149) .+.|.+.|+..-.| +.|+++|. ++.+.+. ...+.+|..|.|+..+.-+.=. ||-.....+.+.+ T Consensus 25 a~al~~~Gi~~iEitl~tp~a~~~---i~~l~~~----~~~~~~vGaGTV~~~~~~~~a~~aGA~FivsP~~~~~v~~~a 97 (212) T 2v82_A 25 VGAVIDAGFDAVEIPLNSPQWEQS---IPAIVDA----YGDKALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRA 97 (212) T ss_dssp HHHHHHHTCCEEEEETTSTTHHHH---HHHHHHH----HTTTSEEEEECCCSHHHHHHHHHTTCCEEECSSCCHHHHHHH T ss_pred HHHHHHCCCCEEEEECCCCCHHHH---HHHHHHH----CCCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH T ss_conf 999998699989995799349999---9999996----687507853022247889999854897898998998999999 Q ss_pred HHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 743997056542558899999950 Q gi|254780346|r 99 INGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 99 l~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .+.++|.+-|+.|+....+|++.- T Consensus 98 ~~~~i~~iPGv~TpsEi~~A~~~G 121 (212) T 2v82_A 98 VGYGMTVCPGCATATEAFTALEAG 121 (212) T ss_dssp HHTTCEEECEECSHHHHHHHHHTT T ss_pred HHCCCCCCCCCCCHHHHHHHHHCC T ss_conf 975876338848769999999829 No 71 >2rjo_A Twin-arginine translocation pathway signal protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: GAL; 2.05A {Burkholderia phytofirmans psjn} Probab=65.08 E-value=7.7 Score=18.74 Aligned_cols=28 Identities=14% Similarity=0.013 Sum_probs=12.9 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHC Q ss_conf 1799980312899999999999999987 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSR 34 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~ 34 (149) +|+++...-...-...-.+|+.+.++++ T Consensus 138 ~v~~~~g~~~~~~~~~R~~g~~~~l~~~ 165 (332) T 2rjo_A 138 GVVALGGIFSNVPAIERKAGLDAALKKF 165 (332) T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHHHTC T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHC T ss_conf 8995788876447999999999999878 No 72 >2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A* Probab=64.87 E-value=7.8 Score=18.71 Aligned_cols=39 Identities=10% Similarity=0.054 Sum_probs=31.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH Q ss_conf 8717999803128999999999999999879955555300 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP 44 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP 44 (149) +|||+||..++|- -|+.|.+...+.+.+.|++++.+.++ T Consensus 5 ~~Kilivy~S~~G-nT~~la~~i~~g~~~~g~ev~~~~~~ 43 (200) T 2a5l_A 5 SPYILVLYYSRHG-ATAEMARQIARGVEQGGFEARVRTVP 43 (200) T ss_dssp CCEEEEEECCSSS-HHHHHHHHHHHHHHHTTCEEEEEBCC T ss_pred CCEEEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9828999938980-89999999999886449668998436 No 73 >3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Nostoc SP} PDB: 2klb_A Probab=64.28 E-value=8 Score=18.65 Aligned_cols=88 Identities=8% Similarity=0.050 Sum_probs=49.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 58717999803128999999999999999879955555300144226999999863311378535665412000665246 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) -+++|+||+.+.+- -|..|.+...+.+.+.|++++.+.++-+.........+. .+|+++.-....-|. T Consensus 3 ~~kkV~IvY~S~tG-nT~~~A~~Ia~gl~~~gv~v~~~~~~~~~~~~~~~~~l~-------~~d~i~~G~pt~~~~---- 70 (159) T 3fni_A 3 AETSIGVFYVSEYG-YSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVG-------RCTGLVIGMSPAASA---- 70 (159) T ss_dssp CCCEEEEEECTTST-THHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH-------TEEEEEEECCBTTSH---- T ss_pred CCCEEEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH-------CCCEEEECCCCCCCC---- T ss_conf 78889999999983-399999999999986298369998555787788998650-------299899837755566---- Q ss_pred HHHHHHHHHHHHHHHHHCCCCC Q ss_conf 7899999999999997439970 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPI 105 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI 105 (149) .-......-+....+. +.|+ T Consensus 71 -~~~~~~~~~l~~~~~~-~k~v 90 (159) T 3fni_A 71 -ASIQGALSTILGSVNE-KQAV 90 (159) T ss_dssp -HHHHHHHHHHHHHCCT-TSEE T ss_pred -CHHHHHHHHHHHCCCC-CCEE T ss_conf -0499999999850648-9779 No 74 >3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032} Probab=63.81 E-value=8.1 Score=18.59 Aligned_cols=98 Identities=3% Similarity=-0.082 Sum_probs=58.6 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 871799980312899999999999999987995555530-0144226999999863311378535665412000665246 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V-PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) -.+|+++.+......+..-+.|+.+.+.+.+...+.+.. +...+-++.....+ ....+++++|. . T Consensus 184 ~r~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~ai~~~----------~ 249 (348) T 3bil_A 184 ALPIGYLSGPMDTSTGRERLEDFKAACANSKIGEQLVFLGGYEQSVGFEGATKL----LDQGAKTLFAG----------D 249 (348) T ss_dssp CCSEEEECCCTTSHHHHHHHHHHHHHHHHTTCCCCEEECCCSSHHHHHHHHHHH----HHTTCSEEEES----------S T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHH----HHCCCCEEECC----------C T ss_conf 636999917865557999999999999966999726995687666799999986----53035157428----------8 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH Q ss_conf 78999999999999974399705654255889999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQA 118 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA 118 (149) |.++..+.+.+.+..+ .+|==..|++.+|...+ T Consensus 250 d~~A~g~~~~l~~~g~--~vP~disIigfD~~~~~ 282 (348) T 3bil_A 250 SMMTIGVIEACHKAGL--VIGKDVSVIGFDTHPLF 282 (348) T ss_dssp HHHHHHHHHHHHHTTC--CBTTTBEEEEESCCGGG T ss_pred HHHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHH T ss_conf 8999999999998599--88998799998981899 No 75 >3e61_A Putative transcriptional repressor of ribose operon; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp} Probab=62.90 E-value=8.5 Score=18.49 Aligned_cols=63 Identities=10% Similarity=0.088 Sum_probs=36.3 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEE Q ss_conf 71799980312899999999999999987995555530014422699-999986331137853566541 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG 73 (149) +-|++|...........++.|..+.+.++|+...........+.-.. ++.+. ....||+|..+ T Consensus 9 ~~IGvi~p~~~~~~~~~l~~~i~~~a~~~g~~~~~~~~~~~~~~e~~~~~~l~-----~~~vdgiii~~ 72 (277) T 3e61_A 9 KLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFV-----SHNCTGMISTA 72 (277) T ss_dssp -CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEECG T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCEEEEECC T ss_conf 98999909997789999999999999984999999978999899999999998-----65982999525 No 76 >2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A 2rk6_A ... Probab=62.74 E-value=7 Score=19.00 Aligned_cols=96 Identities=13% Similarity=0.084 Sum_probs=51.4 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC Q ss_conf 58717999803128999999999999999879955555300------144226999999863311378535665412000 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149) ..+|++|+.+.-.++. =+-...+.|...|++++.+.+. ++.-+.......+.......+||+++.-| T Consensus 2 ~~kKvlill~dGf~~~---E~~~p~~~L~~ag~~v~v~s~~~~~~v~~~~g~~v~~d~~~~~~~~~~~yD~lvIpG---- 74 (197) T 2rk3_A 2 ASKRALVILAKGAEEM---ETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPG---- 74 (197) T ss_dssp CCCEEEEEECTTCCHH---HHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECC---- T ss_pred CCCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCEECCCCCHHHCCCCCCCEEEEECC---- T ss_conf 9889999948997799---999999999978998999986899717727996882677577667677970999859---- Q ss_pred CCCCHHHH-HHHHHHHHHHHHHHHCCCCCEE Q ss_conf 66524678-9999999999999743997056 Q gi|254780346|r 78 GKTAHCDV-IAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 78 GeT~H~e~-I~~~v~~gl~~lsl~~~~PI~~ 107 (149) ...+.+. ..+.-...+.+-..+.+.||+- T Consensus 75 -G~~~~~~l~~~~~l~~~i~~~~~~~k~i~a 104 (197) T 2rk3_A 75 -GNLGAQNLSESAAVKEILKEQENRKGLIAT 104 (197) T ss_dssp -CHHHHHHHHHCHHHHHHHHHHHHTTCEEEE T ss_pred -CCCHHHHHCCCHHHHHHHHHHHHCCCEEEE T ss_conf -970386744599999999998744968960 No 77 >1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1 Probab=61.93 E-value=8.8 Score=18.38 Aligned_cols=65 Identities=11% Similarity=0.016 Sum_probs=44.6 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 6587179998031289999999999999998799555553001442269999998633113785356654 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVL 72 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaL 72 (149) -|+|+++|+..+--.. .-.+.|.+.|+++|++++ ++|-++-..|--...+.+.. ....++.+|+. T Consensus 9 ~Mkp~V~IimGS~SD~---~~~~~a~~~L~~~gI~~e-~~V~SAHRtp~~l~~~~~~~-~~~~~~viIa~ 73 (170) T 1xmp_A 9 HMKSLVGVIMGSTSDW---ETMKYACDILDELNIPYE-KKVVSAHRTPDYMFEYAETA-RERGLKVIIAG 73 (170) T ss_dssp --CCSEEEEESSGGGH---HHHHHHHHHHHHTTCCEE-EEECCTTTSHHHHHHHHHHT-TTTTCCEEEEE T ss_pred CCCCCEEEEECCHHHH---HHHHHHHHHHHHCCCCEE-EEEEECCCCHHHHHHHHHHH-HHCCCEEEEEE T ss_conf 6787189998978469---999999999998199569-98981622858899999999-85685399981 No 78 >2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti} Probab=61.42 E-value=9 Score=18.32 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=33.3 Q ss_pred CCCCCCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 966587179998031-289999999999999998799555553 Q gi|254780346|r 1 MEVFIPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIV 42 (149) Q Consensus 1 m~~~~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~ 42 (149) |....|||++|.++- -.-.+..|++-+.+.+.+.|++.+.+. T Consensus 30 ~~~~~pKIl~i~GS~R~~S~~~~La~~~~~~l~~~g~ev~iid 72 (247) T 2q62_A 30 FSTHRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFD 72 (247) T ss_dssp CCCSCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECC T ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC T ss_conf 6789984999979999988899999999998876798799975 No 79 >8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A Probab=60.90 E-value=9.2 Score=18.27 Aligned_cols=34 Identities=3% Similarity=-0.219 Sum_probs=25.5 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 8717999803128999999999999999879955 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQW 38 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~ 38 (149) ..||++|...-....-..+..|+.+.++++|++. T Consensus 2 ~~kIg~i~~~~~~p~~~~~~~g~~~~a~~~g~~~ 35 (306) T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 35 (306) T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEE T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 7499999699988899999999999999739999 No 80 >3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis} Probab=60.35 E-value=8.8 Score=18.38 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.3 Q ss_pred CCCEEEEEEECHHH---HHHHHHHHHHHHHHHHC--CCCEEEE Q ss_conf 58717999803128---99999999999999987--9955555 Q gi|254780346|r 4 FIPHVLIIEARFYE---NLSAMLFEGCVNVLHSR--AVQWSSI 41 (149) Q Consensus 4 ~~~kI~IV~s~~~~---~i~~~ll~ga~~~l~~~--~~~~~~i 41 (149) -|+||++|.+.-++ -.+..|.+.+.+.+.+. +.+++.+ T Consensus 3 ~M~kvL~I~~spr~~~~S~s~~la~~f~~~~~~~~~~~ev~~~ 45 (211) T 3p0r_A 3 AMTKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVEL 45 (211) T ss_dssp -CCEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEE T ss_pred CCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 8886999982799988767999999999999975989889999 No 81 >1sg0_A NRH dehydrogenase [quinone] 2; quinone reductase 2, resveratrol, oxidoreductase; HET: FAD STL; 1.50A {Homo sapiens} SCOP: c.23.5.3 PDB: 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* 2qx6_A* 2qx8_A* 2qx9_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 2bzs_A* Probab=59.46 E-value=9.7 Score=18.11 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=30.5 Q ss_pred CEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 7179998031289-9999999999999987995555530 Q gi|254780346|r 6 PHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 6 ~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) .||+||.+.-+++ .+..|++.+.+.+++.|.+++.++. T Consensus 3 mKvLiI~g~P~~~S~s~~l~~~~~~~l~~~g~ev~~~dL 41 (230) T 1sg0_A 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL 41 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 889999828998568999999999999967997999987 No 82 >2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A* Probab=58.84 E-value=10 Score=18.05 Aligned_cols=124 Identities=11% Similarity=0.042 Sum_probs=62.2 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541200066524678 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) .++.++...-....+..-.+|+.+.+.+.+.......... +.-...............+++|+++. .+. T Consensus 124 ~~~~~~~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ai~~~----------~d~ 192 (271) T 2dri_A 124 AKVIELQGIAGTSAARERGEGFQQAVAAHKFNVLASQPAD-FDRIKGLNVMQNLLTAHPDVQAVFAQ----------NDE 192 (271) T ss_dssp CEEEEEECCTTCHHHHHHHHHHHHHHHHHTCEEEEEEECT-TCHHHHHHHHHHHHHHCTTCCEEEES----------SHH T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECC-CHHHHHHHHHHHHHCCCCCCEEEEEC----------CHH T ss_conf 5599970677762277999999999986057640243112-01255689999742346797289945----------759 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 9999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) ++-.+.+.+.+.. ...|...|+-..+...++.... ......-|++|++.++++++ T Consensus 193 ~a~g~~~a~~~~g--~~~~~vig~d~~~~~~~~~~~~~~ltti~~~~~~~g~~av~~l~~~l~ 253 (271) T 2dri_A 193 MALGALRALQTAG--KSDVMVVGFDGTPDGEKAVNDGKLAATIAQLPDQIGAKGVETADKVLK 253 (271) T ss_dssp HHHHHHHHHHHHT--CCSCEEEEEECCHHHHHHHHTTSSCEEEECCHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHC--CCCCCEEECCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHC T ss_conf 9999999999858--986828615798799999856996599945999999999999999977 No 83 >1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3 Probab=58.82 E-value=2.5 Score=21.76 Aligned_cols=96 Identities=15% Similarity=0.131 Sum_probs=56.0 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC Q ss_conf 6587179998031289999999999999998799555553-----00144226999999863311378535665412000 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149) +..+||+|+.+.=.++ .-+....+.|.+.|+.+.++- |-|+.-.+..+...+. ...+..||++|..|- T Consensus 532 l~grKVaILvadGfEe---~E~~~~~~~L~~aG~~V~vV~~~~g~v~~~~G~~v~~D~t~~-~v~~~~yDalvvPGG--- 604 (715) T 1sy7_A 532 IKSRRVAIIIADGYDN---VAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLE-GFRSTMVDAIFIPGG--- 604 (715) T ss_dssp CTTCEEEEECCTTBCH---HHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETT-TCCGGGSSEEEECCC--- T ss_pred CCCCEEEEEECCCCCH---HHHHHHHHHHHHCCCEEEEEECCCCCEECCCCCEEECCCCCC-CCCHHHCCEEEECCC--- T ss_conf 5676799981687348---999999999997799679985676637748998782660015-598524898998899--- Q ss_pred CCCCHHHHH-HHHHHHHHHHHHHHCCCCCEE Q ss_conf 665246789-999999999999743997056 Q gi|254780346|r 78 GKTAHCDVI-AHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 78 GeT~H~e~I-~~~v~~gl~~lsl~~~~PI~~ 107 (149) ....+.. .+.-+..+..=..++++||+- T Consensus 605 --~~~~d~L~~~~~a~~fvr~~~~~gKpIaA 633 (715) T 1sy7_A 605 --AKAAETLSKNGRALHWIREAFGHLKAIGA 633 (715) T ss_dssp --HHHHHHHHTCHHHHHHHHHHHHTTCEEEE T ss_pred --CCCHHHHCCCHHHHHHHHHHHHCCCEEEE T ss_conf --53588761287899999999976997999 No 84 >3k4h_A Putative transcriptional regulator; structural genomics, protein structure initiative; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98} Probab=58.64 E-value=10 Score=18.03 Aligned_cols=67 Identities=13% Similarity=0.063 Sum_probs=42.1 Q ss_pred CCEEEEEEECHH-----HHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 871799980312-----89999999999999998799555553001442269999998633113785356654120 Q gi|254780346|r 5 IPHVLIIEARFY-----ENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 5 ~~kI~IV~s~~~-----~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) .+.|++|..+.. ...-..++.|..+.+.+.|+..-.+......|....+-..+ .+..+||+|..++- T Consensus 8 t~~Iglvip~~~~~~~~npf~~~~i~~i~~~~~~~gy~~~l~~~~~~~~~~~~~~~~l----~~~~vdgiI~~~~~ 79 (292) T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMV----QGRQIGGIILLYSR 79 (292) T ss_dssp CCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHH----HTTCCCEEEESCCB T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH----HHCCCCEEEEECCC T ss_conf 8979999667865654488999999999999998699999982899889999999999----83798789997166 No 85 >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta- barrel, lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Probab=57.83 E-value=6 Score=19.40 Aligned_cols=89 Identities=9% Similarity=0.131 Sum_probs=61.1 Q ss_pred HHHHHHHHCCCCE-EE-EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH-------HHHHHHHHHHH Q ss_conf 9999999879955-55-530014422699999986331137853566541200066524678-------99999999999 Q gi|254780346|r 26 GCVNVLHSRAVQW-SS-IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV-------IAHAVTRGLVD 96 (149) Q Consensus 26 ga~~~l~~~~~~~-~~-i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~-------I~~~v~~gl~~ 96 (149) ...+.|.+.|+.. ++ .+.|+++|.- +.+.++ ..|.+|-.|.|...+.-+.=. |+-.....+.+ T Consensus 42 ~~a~al~~~Gi~~iEitl~tp~a~e~i---~~l~~~-----~p~~~iGaGTV~~~~~~~~a~~aGa~FivsP~~~~~v~~ 113 (225) T 1mxs_A 42 PLADALAAGGIRTLEVTLRSQHGLKAI---QVLREQ-----RPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGITEDILE 113 (225) T ss_dssp HHHHHHHHTTCCEEEEESSSTHHHHHH---HHHHHH-----CTTSEEEEECCCSHHHHHHHHHHTCSSEECSSCCHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHH---HHHHHH-----CCCCEEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHH T ss_conf 999999987998899958994099999---999974-----997078653036799999999779989988989599999 Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 99743997056542558899999950 Q gi|254780346|r 97 LSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 97 lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .+.+.++|.+=|+.|.....+|++.- T Consensus 114 ~a~~~~i~~iPGv~TpsEi~~A~~~G 139 (225) T 1mxs_A 114 AGVDSEIPLLPGISTPSEIMMGYALG 139 (225) T ss_dssp HHHHCSSCEECEECSHHHHHHHHTTT T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCC T ss_conf 99865997257869989999999869 No 86 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Probab=57.09 E-value=10 Score=18.04 Aligned_cols=89 Identities=13% Similarity=0.152 Sum_probs=61.5 Q ss_pred HHHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH-------HHHHHHHHHHH Q ss_conf 9999999879955555--30014422699999986331137853566541200066524678-------99999999999 Q gi|254780346|r 26 GCVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV-------IAHAVTRGLVD 96 (149) Q Consensus 26 ga~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~-------I~~~v~~gl~~ 96 (149) ...+.|.+.|+..-.| +.|+++|.- +.+.+ ...|.+|-.|.|..-++-+.=. ||-.....+.+ T Consensus 33 ~~~~al~~~Gi~~iEITl~t~~a~~~i---~~l~~-----~~p~~~vGaGTVl~~~~~~~a~~aGA~FivSP~~~~~v~~ 104 (224) T 1vhc_A 33 PLADTLAKNGLSVAEITFRSEAAADAI---RLLRA-----NRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVK 104 (224) T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHH---HHHHH-----HCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHH---HHHHH-----HCCCEEEEEECCCCHHHHHHHHHHCCCEEECCCCCHHHHH T ss_conf 999999987998899968980399999---99998-----6899189620204579999999837998972789999999 Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 99743997056542558899999950 Q gi|254780346|r 97 LSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 97 lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) ...+.++|.+-|+.|+....||++.- T Consensus 105 ~a~~~~i~~iPG~~TpsEi~~A~~~G 130 (224) T 1vhc_A 105 LCQDLNFPITPGVNNPMAIEIALEMG 130 (224) T ss_dssp HHHHTTCCEECEECSHHHHHHHHHTT T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCC T ss_conf 99856998458858879999999859 No 87 >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Probab=56.78 E-value=10 Score=18.02 Aligned_cols=88 Identities=17% Similarity=0.208 Sum_probs=62.1 Q ss_pred HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH-------HHHHHHHHHHHH Q ss_conf 999999879955555--30014422699999986331137853566541200066524678-------999999999999 Q gi|254780346|r 27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV-------IAHAVTRGLVDL 97 (149) Q Consensus 27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~-------I~~~v~~gl~~l 97 (149) ..+.|.+.|+..-.| +.|+++|.- +.+.+ .-.|..|-.|.|..-|+-+.=. ||-.....+.+. T Consensus 33 i~~al~~~Gi~~iEItl~tp~a~~~i---~~l~~-----~~p~~~iGaGTV~~~e~~~~a~~aGa~FivsP~~~~~v~~~ 104 (214) T 1wbh_A 33 MAKALVAGGVRVLNVTLRTECAVDAI---RAIAK-----EVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKA 104 (214) T ss_dssp HHHHHHHTTCCEEEEESCSTTHHHHH---HHHHH-----HCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----HCCCCEEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHH T ss_conf 99999987998899937986799999---99998-----78996795245453689999998199899858999999999 Q ss_pred HHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 9743997056542558899999950 Q gi|254780346|r 98 SINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 98 sl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) +.++++|.+=|+.|+....||++.- T Consensus 105 a~~~~i~~iPGv~TpsEi~~A~~~G 129 (214) T 1wbh_A 105 ATEGTIPLIPGISTVSELMLGMDYG 129 (214) T ss_dssp HHHSSSCEEEEESSHHHHHHHHHTT T ss_pred HHHCCCCCCCCCCCHHHHHHHHHCC T ss_conf 9854997537849889999999859 No 88 >1ta9_A Glycerol dehydrogenase; oxidoreductase; 1.90A {Schizosaccharomyces pombe} Probab=56.56 E-value=11 Score=17.81 Aligned_cols=88 Identities=10% Similarity=0.025 Sum_probs=49.8 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .+|++||....-. +...+...+.|++.|+++....++|---.. .++.+... ...++|.||++|= . T Consensus 91 ~kr~LIVtd~~~~---~~~~~~v~~~L~~~gi~v~~~~~~~~pt~~-~v~~~~~~--~~~~~D~IIAVGG----G----- 155 (450) T 1ta9_A 91 TKSAVVLADQNVW---NICANKIVDSLSQNGMTVTKLVFGGEASLV-ELDKLRKQ--CPDDTQVIIGVGG----G----- 155 (450) T ss_dssp SSEEEEEEEHHHH---HHTHHHHHHHHHHTTCEEEEEEECSCCCHH-HHHHHHTT--SCTTCCEEEEEES----H----- T ss_pred CCEEEEEECCCHH---HHHHHHHHHHHHHCCCEEEEEEECCCCCHH-HHHHHHHH--HHCCCCEEEEECC----C----- T ss_conf 9969999892488---999999999998769979999718998999-99999997--5228998999679----6----- Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEC Q ss_conf 899999999999997439970565425 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVV 111 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt 111 (149) ++.+.-.-++...++|++.---| T Consensus 156 ----SviD~AK~ia~~~~~p~i~VPTT 178 (450) T 1ta9_A 156 ----KTMDSAKYIAHSMNLPSIICPTT 178 (450) T ss_dssp ----HHHHHHHHHHHHTTCCEEEEESS T ss_pred ----HHHHHHHHHHHHCCCCEEEECCC T ss_conf ----38688899886427866884586 No 89 >1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A* Probab=56.08 E-value=11 Score=17.76 Aligned_cols=63 Identities=11% Similarity=0.165 Sum_probs=38.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031289999999999999998799555553-001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||..+.-. ....++...+.|++.|+++.++. +++ .+|.--.+... .+..++|.+|++| T Consensus 31 ~k~vlvv~~~~~~--~~g~~~~i~~~L~~~gi~~~vf~~v~~~pt~~~v~~~~~~----~~~~~~D~IiavG 96 (386) T 1rrm_A 31 YQKALIVTDKTLV--QCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGV----FQNSGADYLIAIG 96 (386) T ss_dssp CCEEEEECBHHHH--HTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHH----HHHHTCSEEEEEE T ss_pred CCEEEEEECCCHH--HCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHH----HHCCCCCEEEECC T ss_conf 9879999897756--5827999999998759839998784799799999998655----5035888799768 No 90 >3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli K12} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A* Probab=55.52 E-value=11 Score=17.70 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=28.2 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHC-CCCEEEEEHH Q ss_conf 871799980312899999999999999987-9955555300 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSR-AVQWSSIVTP 44 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~-~~~~~~i~VP 44 (149) |+||+||+.+.|- -|+.|.+...+-..+. +++++.+.++ T Consensus 1 M~KilVvy~S~~G-nT~~lA~aiaeGa~~a~g~ev~~~~~~ 40 (198) T 3b6i_A 1 MAKVLVLYYSMYG-HIETMARAVAEGASKVDGAEVVVKRVP 40 (198) T ss_dssp -CEEEEEECCSSS-HHHHHHHHHHHHHHTSTTCEEEEEECC T ss_pred CCCEEEEEECCCH-HHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 9948999989981-899999999974886289379998433 No 91 >1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A Probab=55.12 E-value=11 Score=17.66 Aligned_cols=99 Identities=9% Similarity=0.064 Sum_probs=55.3 Q ss_pred CCEEEEEEECHHHHH-HH--------HHHHHHHHHHHHCCCCEEEEEHHH------------HHHHHHHHHHH------- Q ss_conf 871799980312899-99--------999999999998799555553001------------44226999999------- Q gi|254780346|r 5 IPHVLIIEARFYENL-SA--------MLFEGCVNVLHSRAVQWSSIVTPG------------VLEIPAAVSMV------- 56 (149) Q Consensus 5 ~~kI~IV~s~~~~~i-~~--------~ll~ga~~~l~~~~~~~~~i~VPG------------a~EiP~a~~~~------- 56 (149) -|||+||.++++... .+ .=+-.....|.+.|++++...--| .+.-+....+. T Consensus 3 ~KkvLiv~ts~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~~aSp~G~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 82 (243) T 1rw7_A 3 PKKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82 (243) T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 87499997787544688887262559999999999997798599982899877887666622246377788875118888 Q ss_pred --HHH-----HHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf --863-----311378535665412000665246789999999999999743997056 Q gi|254780346|r 57 --MNA-----KTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 57 --~~~-----~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) ++. .....+||+++.-| |--.-+++-.+.....+..-..+.+.||+- T Consensus 83 ~~l~~~~~~~~v~~~~ydav~ipG----G~g~~~dl~~~~~l~~~~~~~~~~~k~v~a 136 (243) T 1rw7_A 83 KTLAKIKTPKEVNADDYQIFFASA----GHGTLFDYPKAKDLQDIASEIYANGGVVAA 136 (243) T ss_dssp HHHHTCBCGGGCCGGGEEEEEECC----STTHHHHGGGCHHHHHHHHHHHHTTCEEEE T ss_pred HHHHCCCCHHHCCHHHCCEEEECC----CCHHHHHHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 776356895788986786899569----960376624302455999999976993688 No 92 >2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Probab=54.60 E-value=12 Score=17.61 Aligned_cols=95 Identities=14% Similarity=0.225 Sum_probs=48.4 Q ss_pred CCCCCEEEEEEECHHHH----HHHHHH---------HHHHHHHHHCCCCEEEEEHH---H-HHHHHHHHHHHHHHHHCCC Q ss_conf 66587179998031289----999999---------99999999879955555300---1-4422699999986331137 Q gi|254780346|r 2 EVFIPHVLIIEARFYEN----LSAMLF---------EGCVNVLHSRAVQWSSIVTP---G-VLEIPAAVSMVMNAKTRSV 64 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~----i~~~ll---------~ga~~~l~~~~~~~~~i~VP---G-a~EiP~a~~~~~~~~~~~~ 64 (149) .+-.+.|+|-.+++.++ +...|. .|..+.|.++|++...+.-| | .-..|-+.+++ .++ T Consensus 21 ~lP~kgvliSv~d~dK~~~~~~a~~L~~lGf~i~AT~GTa~~L~~~gi~~~~V~~~~~~~~~~~~~~i~~~i-----~~g 95 (143) T 2yvq_A 21 KIPQKGILIGIQQSFRPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLI-----RDG 95 (143) T ss_dssp CCCCSEEEEECCGGGHHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHH-----HTT T ss_pred CCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHH-----HCC T ss_conf 889988899986763778999999999749678973589999997598518998521367666743399998-----759 Q ss_pred CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 853566541200066524678999999999999974399705654 Q gi|254780346|r 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGI 109 (149) Q Consensus 65 ~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gI 109 (149) ++|-||-+- +...+.+.+ ...|.+.++++++|+...+ T Consensus 96 ~i~lVINtp------~~~~~~~~d--g~~IRR~Av~~~Ip~~T~i 132 (143) T 2yvq_A 96 SIDLVINLP------NNNTKFVHD--NYVIRRTAVDSGIPLLTNF 132 (143) T ss_dssp SCCEEEECC------CCCGGGHHH--HHHHHHHHHHTTCCEECSH T ss_pred CEEEEEECC------CCCCCCCCC--HHHHHHHHHHCCCCEEECH T ss_conf 759999867------899765665--7999999997599988689 No 93 >3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding protein, alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5} Probab=54.00 E-value=12 Score=17.55 Aligned_cols=103 Identities=13% Similarity=0.004 Sum_probs=55.9 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 17999803128999999999999999879955555-30014422699999986331137853566541200066524678 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) +|+++...-....+..=.+|+.+.|.+++ ..+.+ .++|-|....+.+...+-.....++|+++|. .|. T Consensus 147 ~i~~i~G~~~~~~~~~R~~G~~~al~~~~-~~~i~~~~~~~~~~~~a~~~~~~lL~~~pdi~ai~~~----------nD~ 215 (350) T 3h75_A 147 ELLAFSGLKVTPAAQLRERGLRRALAEHP-QVHLRQLVYGEWNRERAYRQAQQLLKRYPKTQLVWSA----------NDE 215 (350) T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHCT-TEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES----------SHH T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC----------CHH T ss_conf 79999588677278898889999999779-9740255543256899999999998359998099987----------859 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 9999999999999743997056542558899999950 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) ++-.+.+++.+..++ .|-=..|.+.+...++.+.. T Consensus 216 ~A~Ga~~Al~~~G~~--~~~di~vvG~D~~~~~l~~i 250 (350) T 3h75_A 216 MALGAMQAARELGRK--PGTDLLFSGVNSSPEALQAL 250 (350) T ss_dssp HHHHHHHHHHHTTCC--BTTTBEEEEESCCHHHHHHH T ss_pred HHHHHHHHHHHCCCC--CCCCEEEEEECCCHHHHHHH T ss_conf 999999999975999--99995999989859999998 No 94 >3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum} Probab=53.52 E-value=12 Score=17.50 Aligned_cols=107 Identities=15% Similarity=0.137 Sum_probs=54.2 Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEH--HHHHHHHHH---HHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHH Q ss_conf 999999999999987995555530--014422699---999986331137853566541200066524678999999999 Q gi|254780346|r 20 SAMLFEGCVNVLHSRAVQWSSIVT--PGVLEIPAA---VSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGL 94 (149) Q Consensus 20 ~~~ll~ga~~~l~~~~~~~~~i~V--PGa~EiP~a---~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl 94 (149) ...-+.|+.+.+.+++...+.+.+ .+.+..... .+.++ ....++++++|. .|.++..+.+.+ T Consensus 221 ~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~ai~~~----------nD~~A~g~~~al 287 (366) T 3h5t_A 221 QRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELL---ETHPDLTAVLCT----------VDALAFGVLEYL 287 (366) T ss_dssp HHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHH---HHCTTCCEEEES----------SHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHHHH---CCCCCCCEEECC----------CHHHHHHHHHHH T ss_conf 7776689999999839995531354124566677888998864---128998765228----------889999999999 Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHH----CCCCCCCHHHHHHHHHHHH Q ss_conf 9999743997056542558899999950----6565745699999999999 Q gi|254780346|r 95 VDLSINGSLPIGNGIVVVDSEQQAFDRV----SPSHLDRGGCAARSALAMI 141 (149) Q Consensus 95 ~~lsl~~~~PI~~gILt~~n~~QA~~R~----~~~~~nkG~eaa~Aal~mi 141 (149) .+..+ .+|=-..|++.++...+..-. .......|.+|++.+++++ T Consensus 288 ~~~Gl--~vP~di~Vig~D~~~~~~~p~Ltti~~~~~~~g~~av~~l~~~i 336 (366) T 3h5t_A 288 KSVGK--SAPADLSLTGFDGTHMALARDLTTVIQPNKLKGFKAGETLLKMI 336 (366) T ss_dssp HHTTC--CTTTTCEEEEEECCHHHHHTTCCEEECCHHHHHHHHHHHHHHHH T ss_pred HHCCC--CCCCCEEEEEECCCHHHHCCCCCEEEECHHHHHHHHHHHHHHHH T ss_conf 98599--99998799998966899389983898599999999999999997 No 95 >1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural genomics, JCSG, protein structure initiative, PSI; HET: NAP; 1.78A {Thermotoga maritima MSB8} SCOP: e.22.1.2 Probab=50.76 E-value=13 Score=17.23 Aligned_cols=63 Identities=14% Similarity=0.315 Sum_probs=35.9 Q ss_pred CCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031-289999999999999998799555553-001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||.++- .+ ...+++...+.|++.++++.++. +++ .+|.- ...... .+..++|.||++| T Consensus 43 ~kkvliVt~~~~~~--~~g~~~~v~~~L~~~gi~~~~f~~v~~~pt~~~v---~~~~~~-~~~~~~D~IIavG 109 (407) T 1vlj_A 43 IRKVLFLYGGGSIK--KNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKV---HEAVEV-AKKEKVEAVLGVG 109 (407) T ss_dssp CCEEEEEECSSHHH--HSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHH---HHHHHH-HHHTTCSEEEEEE T ss_pred CCEEEEEECCCHHH--HCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHH---HHHHHH-HHHCCCCEEEECC T ss_conf 98589998875788--7529999999998659939998570799999999---999999-9745997899549 No 96 >3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A* Probab=50.24 E-value=14 Score=17.18 Aligned_cols=37 Identities=5% Similarity=-0.251 Sum_probs=19.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7179998031289999999999999998799555553 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV 42 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~ 42 (149) -||+++..+...+.-..+.+++.+.+++.|++..... T Consensus 3 ~~Ig~~v~~~~~~~~~~~~~~~~~~a~~~G~~~~v~~ 39 (313) T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQS 39 (313) T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 1999994889998999999999999997399899995 No 97 >3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structural genomics, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343} Probab=50.01 E-value=14 Score=17.16 Aligned_cols=62 Identities=6% Similarity=0.041 Sum_probs=24.6 Q ss_pred EEEEEECHHHHHHHHHHHHHHHHHHHC---CCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE Q ss_conf 799980312899999999999999987---99555553001442269999998633113785356654 Q gi|254780346|r 8 VLIIEARFYENLSAMLFEGCVNVLHSR---AVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVL 72 (149) Q Consensus 8 I~IV~s~~~~~i~~~ll~ga~~~l~~~---~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaL 72 (149) ++||........-..+..|+.+..++. ++.... ..++.++..--.+.+-. ....++||+|.. T Consensus 12 ~~iip~~~~~~y~~~~~~G~~~aa~e~~~~~i~~~i-~~~~~~d~~~q~~~l~~--~i~~~vDgIii~ 76 (304) T 3gbv_A 12 ACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANI-THYDPYDYNSFVATSQA--VIEEQPDGVMFA 76 (304) T ss_dssp EEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEE-EEECSSCHHHHHHHHHH--HHTTCCSEEEEC T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE-EECCCCCHHHHHHHHHH--HHHCCCCEEEEE T ss_conf 999828999989999999999999971548879999-96898999999999999--997599999994 No 98 >1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A Probab=49.96 E-value=14 Score=17.16 Aligned_cols=94 Identities=15% Similarity=0.149 Sum_probs=53.1 Q ss_pred CCEEEEEEEC----------------HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHH--------H-------------- Q ss_conf 8717999803----------------1289999999999999998799555553001--------4-------------- Q gi|254780346|r 5 IPHVLIIEAR----------------FYENLSAMLFEGCVNVLHSRAVQWSSIVTPG--------V-------------- 46 (149) Q Consensus 5 ~~kI~IV~s~----------------~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG--------a-------------- 46 (149) ++||++|.|+ |-.|.... ...|.+.|++++....-| + T Consensus 48 ~kKILvv~s~~~~l~~~~gk~~~TG~~~~E~~~P-----~~~L~~AG~eVdiASp~Gg~~~~D~~s~~~~d~~~~~~~~~ 122 (291) T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLP-----LYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQ 122 (291) T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHH-----HHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHH T ss_pred CCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHH-----HHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9659999807875326899774677689999999-----99999789879998479987776845475034567999987 Q ss_pred ----HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf ----4226999999863311378535665412000665246789999999999999743997056 Q gi|254780346|r 47 ----LEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 47 ----~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) |+-|.....+........+||+|..-|-- -.-+++--+.-...|.+-..+.+.||+- T Consensus 123 ~~~~~~~~~~L~~v~~~~~~~~dYdaVfiPGGh----G~m~dL~~~~~l~~ll~~f~~~gk~VaA 183 (291) T 1n57_A 123 HKSLFRNPKKLADVVASLNADSEYAAIFVPGGH----GALIGLPESQDVAAALQWAIKNDRFVIS 183 (291) T ss_dssp HHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSG----GGGSSGGGCHHHHHHHHHHHHTTCEEEE T ss_pred HHHHHHCCCCHHHHHHCCCCCCCCCEEEECCCC----CHHHHCCCCHHHHHHHHHHHHCCCEEEE T ss_conf 788875731065521111784345389989986----3476621088999999999975992898 No 99 >3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans} Probab=48.15 E-value=13 Score=17.30 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=24.8 Q ss_pred CCCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 587179998031289-99999999999999879955555 Q gi|254780346|r 4 FIPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 4 ~~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i 41 (149) |++||++|.++-.+. .+..|.+-+.+.+.+ +.+++.+ T Consensus 1 MskKIl~i~GS~R~~s~t~~la~~~~~~l~~-~~ev~~~ 38 (192) T 3fvw_A 1 MSKRILFIVGSFSEGSFNRQLAKKAETIIGD-RAQVSYL 38 (192) T ss_dssp --CEEEEEESCCSTTCHHHHHHHHHHHHHTT-SSEEEEC T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHCCC-CCEEEEE T ss_conf 9984999989999998799999999987579-9779998 No 100 >1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A* Probab=47.27 E-value=15 Score=16.90 Aligned_cols=63 Identities=11% Similarity=0.203 Sum_probs=36.8 Q ss_pred CCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031-289999999999999998799555553-001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) -+|++||.++- .+ ...+++...+.|.+.++++.++. +.+ .+|- +....+ ..+..++|.+|++| T Consensus 40 g~r~liV~~~~~~~--~~g~~~~v~~~L~~~~i~~~vf~~v~~~p~~~~---v~~~~~-~~~~~~~D~IvavG 106 (371) T 1o2d_A 40 GKRALVVTGKSSSK--KNGSLDDLKKLLDETEISYEIFDEVEENPSFDN---VMKAVE-RYRNDSFDFVVGLG 106 (371) T ss_dssp CSEEEEEEESSGGG--TSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHH---HHHHHH-HHTTSCCSEEEEEE T ss_pred CCEEEEEECCCHHH--HHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH---HHHHHH-HHHHCCCCEEEEEC T ss_conf 99589997686888--735999999999876985999688668979999---999999-99854998899828 No 101 >1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A* Probab=46.93 E-value=15 Score=16.86 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=24.6 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) +|++||..+.-.+.. .+...+.|.+.++.+....++|---. -.++.+.+. .+..+.|.+|++| T Consensus 32 ~r~lvv~d~~~~~~~---~~~v~~~L~~~~i~~~~~~~~~~~t~-~~v~~~~~~-~~~~~~D~IvavG 94 (370) T 1jq5_A 32 NKTVVIADEIVWKIA---GHTIVNELKKGNIAAEEVVFSGEASR-NEVERIANI-ARKAEAAIVIGVG 94 (370) T ss_dssp SEEEEEECHHHHHHT---HHHHHHHHHTTTCEEEEEECCSSCBH-HHHHHHHHH-HHHTTCSEEEEEE T ss_pred CEEEEEECCCHHHHH---HHHHHHHHHHCCCEEEEEEECCCCCH-HHHHHHHHH-HHHCCCCEEEECC T ss_conf 959999897688999---99999999877996999995999999-999999999-7604887899737 No 102 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=45.25 E-value=16 Score=16.70 Aligned_cols=39 Identities=8% Similarity=0.041 Sum_probs=30.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 5871799980312899999999999999987995555530 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) .++||+||..+.+ .-|+.|-+...+.+.+.|++++.+.+ T Consensus 255 ~~~ki~IvY~S~~-G~T~~~A~~ia~g~~~~g~ev~~~~~ 293 (414) T 2q9u_A 255 CQKKVTVVLDSMY-GTTHRMALALLDGARSTGCETVLLEM 293 (414) T ss_dssp CCSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEG T ss_pred CCCEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 5873999999898-81999999999998755980799981 No 103 >3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum} Probab=45.09 E-value=17 Score=16.69 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=13.1 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 7179998031289999999999999998799 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAV 36 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~ 36 (149) .+|+++.+..... ...-..+....+.+.+. T Consensus 179 r~i~~i~~~~~~~-~~~~~~~~~~~~~~~~~ 208 (339) T 3h5o_A 179 RRIGFLGAQLDER-VMKRLDGYRAALDAADC 208 (339) T ss_dssp CSEEEEEESCCHH-HHHHHHHHHHHHHHTTC T ss_pred CEEEEECCCCCCH-HHHHHHHHHHHHHHCCC T ss_conf 7499852777520-56888999999997489 No 104 >2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A Probab=44.82 E-value=17 Score=16.66 Aligned_cols=86 Identities=17% Similarity=0.281 Sum_probs=42.9 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 96658717999803128999999999999999879955555300144226999999863311378535665412000665 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) |+.|++||+||.-+ +.+ .+.-.+.|...|+++.... ..-|. .+.+ . ...||.+|. -+-..| . T Consensus 1 m~~Mk~kILiVeDd--~~~----~~~l~~~L~~~g~~v~~a~--~~~~a---l~~~-~----~~~~Dliil-D~~lp~-~ 62 (238) T 2gwr_A 1 MDTMRQRILVVDDD--ASL----AEMLTIVLRGEGFDTAVIG--DGTQA---LTAV-R----ELRPDLVLL-DLMLPG-M 62 (238) T ss_dssp -CCCCCEEEEECSC--HHH----HHHHHHHHHHTTCEEEEEC--CGGGH---HHHH-H----HHCCSEEEE-ESSCSS-S T ss_pred CCCCCCEEEEEECC--HHH----HHHHHHHHHHCCCEEEEEC--CHHHH---HHHH-H----HCCCCEEEE-ECCCCC-C T ss_conf 97668749999399--999----9999999997799999989--99999---9999-8----379999999-167766-6 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC Q ss_conf 2467899999999999997439970565425588 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDS 114 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n 114 (149) +-++++. .+.-....|++ ++|..+ T Consensus 63 ~g~~~~~--------~~r~~~~~~iI--ilt~~~ 86 (238) T 2gwr_A 63 NGIDVCR--------VLRADSGVPIV--MLTAKT 86 (238) T ss_dssp CHHHHHH--------HHHTTCCCCEE--EEEETT T ss_pred CCCCEEE--------CCCCCCCCCCC--CCCCCC T ss_conf 8871231--------12235665311--012589 No 105 >2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,, transport protein; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A* Probab=44.57 E-value=17 Score=16.64 Aligned_cols=28 Identities=4% Similarity=0.082 Sum_probs=14.0 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHC Q ss_conf 1799980312899999999999999987 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSR 34 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~ 34 (149) ||+++........-..+..|..+...+. T Consensus 4 kIgv~~~~~~~~f~~~~~~g~~~~a~~~ 31 (309) T 2fvy_A 4 RIGVTIYKYDDNFMSVVRKAIEQDAKAA 31 (309) T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHTC T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHC T ss_conf 8999978998989999999999999876 No 106 >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 Probab=44.09 E-value=17 Score=16.59 Aligned_cols=105 Identities=14% Similarity=0.085 Sum_probs=59.3 Q ss_pred EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH Q ss_conf 53001442269999998633113785356654120006652467899999999999997439970565425588999999 Q gi|254780346|r 41 IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFD 120 (149) Q Consensus 41 i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~ 120 (149) +++.|.. -|-.....++.-....++|+++++...-.......+-+.....+.+.+. ...+||....+.....+++.+ T Consensus 345 lD~~~~~-~~~~~~~~l~~~~~dp~vD~vl~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~kPvv~~~~g~~~~~~~~~ 421 (457) T 2csu_A 345 VDMIASA-RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEV--NNEKPVLAMFMAGYVSEKAKE 421 (457) T ss_dssp EECCTTC-CHHHHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHH--CCCCCEEEEEECTTTTHHHHH T ss_pred EECCCCC-CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHH T ss_conf 5388999-9999999999997399979899997478656787479999999999984--899978999789766099999 Q ss_pred HHCCC---CCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 50656---57456999999999999998636 Q gi|254780346|r 121 RVSPS---HLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 121 R~~~~---~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) +.... .-.--.+|++|.-.+.+..|+.. T Consensus 422 ~l~~~Gip~f~~pe~a~~Al~~l~~y~r~~~ 452 (457) T 2csu_A 422 LLEKNGIPTYERPEDVASAAYALVEQAKNVG 452 (457) T ss_dssp HHHTTTCCEESSHHHHHHHHHHHHHHHHHTT T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 9986899867999999999999999998766 No 107 >2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp} Probab=43.95 E-value=17 Score=16.58 Aligned_cols=33 Identities=9% Similarity=-0.072 Sum_probs=17.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 717999803128999999999999999879955 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQW 38 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~ 38 (149) .||+++...-.......-..|+.+.+.+++... T Consensus 123 ~~i~~i~~~~~~~~~~~r~~g~~~a~~~~~~~~ 155 (288) T 2qu7_A 123 KEVGLLLANPNISTTIGRKNGYNKAISEFDLNV 155 (288) T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 515786377443301454541799999869998 No 108 >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Probab=42.32 E-value=6.8 Score=19.09 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=30.7 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 9999999999999998799555553001442269999998633113785356654120 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) |++..|++-|++.+.+.+...-.+.+.++.++|+ ..++||.|++.+|+ T Consensus 109 D~s~~~l~~ar~~~~~~~~~~v~~~~~d~~~l~~----------~~~~fD~I~~~~vl 156 (241) T 2ex4_A 109 DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP----------EPDSYDVIWIQWVI 156 (241) T ss_dssp ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC----------CSSCEEEEEEESCG T ss_pred ECCHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC----------CCCCCCEEEECCCH T ss_conf 9999999999987765046634899578887157----------75783189964651 No 109 >3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi} Probab=41.67 E-value=19 Score=16.36 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=65.2 Q ss_pred CEEEEEEECHHH-HHHHHHHHHHHHHHHHCCCCEEEE-E--HHHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 717999803128-999999999999999879955555-3--0014422699-9999863311378535665412000665 Q gi|254780346|r 6 PHVLIIEARFYE-NLSAMLFEGCVNVLHSRAVQWSSI-V--TPGVLEIPAA-VSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 6 ~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~~~~~~i-~--VPGa~EiP~a-~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) .||+++...... .....-+.|+.+.+.+++...+.. . -+...+.... ...++ .....++|+++. T Consensus 186 r~i~~i~~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ai~~~-------- 254 (344) T 3kjx_A 186 RRIGFMGTKMPLDYRARKRFEGFTEVLGKNGVEIEDREFYSGGSALAKGREMTQAML---ERSPDLDFLYYS-------- 254 (344) T ss_dssp CSCCEEESSTTTCHHHHHHHHHHHHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHH---HHSTTCCEEEES-------- T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHHHH---HCCCCCCEEECC-------- T ss_conf 739999158865411778999999999972996555300137742224302456675---158643011138-------- Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH------CCCCCCCHHHHHHHHHHHHH Q ss_conf 246789999999999999743997056542558899999950------65657456999999999999 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV------SPSHLDRGGCAARSALAMIE 142 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~------~~~~~nkG~eaa~Aal~mi~ 142 (149) .|.++-.+.+.+.+..+ .+|==..|++.++.+.+..-. .......|..|++.+++++. T Consensus 255 --~d~~A~~~~~~l~~~gl--~vP~dvsvig~d~~~~~~~~~p~lttv~~~~~~~g~~Av~~L~~~i~ 318 (344) T 3kjx_A 255 --NDMIAAGGLLYLLEQGI--DIPGQIGLAGFNNVELLQGLPRKLATMDACRLEIGRKAAEIIAKRLE 318 (344) T ss_dssp --SHHHHHHHHHHHHHTTC--CTTTTCEEECSBCCGGGGGSSSCCBEEBCCHHHHHHHHHHHHHHHHH T ss_pred --CHHHHHHHHHHHHHCCC--CCCCCEEEEEECCHHHHHCCCCCCEEEEECHHHHHHHHHHHHHHHHC T ss_conf --88999999999998699--99998699997885999528999569987999999999999999961 No 110 >1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A Probab=40.41 E-value=20 Score=16.24 Aligned_cols=104 Identities=13% Similarity=0.167 Sum_probs=55.5 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-------------EE-----------HHHH---------HHHH Q ss_conf 5871799980312899999999999999987995555-------------53-----------0014---------4226 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-------------IV-----------TPGV---------LEIP 50 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-------------i~-----------VPGa---------~EiP 50 (149) ||+||+|+.|-=-..-.+..+.++.+.+...+.++-- +. .||+ |.-+ T Consensus 1 m~krIgIltsGG~~pG~Na~i~~~v~~a~~~g~~v~g~~~G~~GL~~~~~~~l~~~~v~~~~~~gGs~lgtsR~~~~~~~ 80 (320) T 1pfk_A 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320) T ss_dssp CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCCCCEEECCHHHHHHHHHCCCCEECCCCCCCCCCH T ss_conf 98649998658886778999999999998779999999166788727986868999997798579972247788866657 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 999999863311378535665412000665246789999999999999743997056542558899999950 Q gi|254780346|r 51 AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 51 ~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .-.+++++. -...+.|+++++| |+ .+.++...++ ++.+|++---=|.+|.-.-.+.| T Consensus 81 ~~~~~~~~~-l~~~~Id~li~iG----Gd---------gs~~~a~~l~-e~~~~vigIPkTIDNDl~~td~s 137 (320) T 1pfk_A 81 NIRAVAIEN-LKKRGIDALVVIG----GD---------GSYMGAMRLT-EMGFPCIGLPGTIDNDIKGTDYT 137 (320) T ss_dssp HHHHHHHHH-HHHTTCCEEEEEE----CH---------HHHHHHHHHH-HTTCCEEEEEBCTTCCCTTCSCC T ss_pred HHHHHHHHH-HHHCCCCEEEEEC----CC---------HHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCC T ss_conf 788899999-9976998899936----93---------6899999976-43674331211222799885338 No 111 >2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A* Probab=39.99 E-value=20 Score=16.20 Aligned_cols=29 Identities=10% Similarity=0.047 Sum_probs=11.9 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCC Q ss_conf 717999803128999999999999999879 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRA 35 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~ 35 (149) .||+|+.+.=| ..-|.+.+|..+.|++.| T Consensus 9 ~ki~i~~~~~~-p~~d~~~~g~~~~l~~~G 37 (302) T 2qh8_A 9 AKVAVSQIVEH-PALDATRQGLLDGLKAKG 37 (302) T ss_dssp EEEEEEESSCC-HHHHHHHHHHHHHHHHTT T ss_pred CEEEEEEEECC-HHHHHHHHHHHHHHHHHC T ss_conf 46999986078-889999999999998609 No 112 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Probab=39.09 E-value=11 Score=17.75 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999987995 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQ 37 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~ 37 (149) |++..|++-|.+.+.+.+++ T Consensus 50 D~S~~ml~~A~~~~~~~~~~ 69 (239) T 1xxl_A 50 DATKEMVEVASSFAQEKGVE 69 (239) T ss_dssp ESCHHHHHHHHHHHHHHTCC T ss_pred ECCHHHHHHHHHHHHHCCCC T ss_conf 79999999999865430565 No 113 >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A Probab=38.52 E-value=15 Score=16.91 Aligned_cols=86 Identities=12% Similarity=0.091 Sum_probs=56.2 Q ss_pred HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHH---------HHHHHHH Q ss_conf 999999879955555--30014422699999986331137853566541200066524678999---------9999999 Q gi|254780346|r 27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAH---------AVTRGLV 95 (149) Q Consensus 27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~---------~v~~gl~ 95 (149) ..+.|.+.|+..-.+ +.|+++|.- +.+.+ ....+..+-.|.|..-| +.+...+ .....+. T Consensus 27 ~~~al~~~Gi~~iEitl~~p~a~~~I---~~l~~----~~~~~~~vGaGTV~~~~--~~~~a~~aGa~fivsP~~~~~v~ 97 (205) T 1wa3_A 27 KALAVFEGGVHLIEITFTVPDADTVI---KELSF----LKEKGAIIGAGTVTSVE--QCRKAVESGAEFIVSPHLDEEIS 97 (205) T ss_dssp HHHHHHHTTCCEEEEETTSTTHHHHH---HHTHH----HHHTTCEEEEESCCSHH--HHHHHHHHTCSEEECSSCCHHHH T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHH---HHHHH----HCCCCEEEEEECCCCHH--HHHHHHHCCCCEEECCCCCHHHH T ss_conf 99999987998899968997689999---99997----31898289630001278--89999864874886799999999 Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 99974399705654255889999995 Q gi|254780346|r 96 DLSINGSLPIGNGIVVVDSEQQAFDR 121 (149) Q Consensus 96 ~lsl~~~~PI~~gILt~~n~~QA~~R 121 (149) +.+.++++|.+-|+.|+....+|++. T Consensus 98 ~~~~~~~~~~iPGv~TptEi~~A~~~ 123 (205) T 1wa3_A 98 QFCKEKGVFYMPGVMTPTELVKAMKL 123 (205) T ss_dssp HHHHHHTCEEECEECSHHHHHHHHHT T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHC T ss_conf 99998399822774871589999976 No 114 >3kht_A Response regulator; PSI-II, structural genomics, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.10A {Hahella chejuensis kctc 2396} Probab=37.95 E-value=21 Score=16.00 Aligned_cols=99 Identities=17% Similarity=0.137 Sum_probs=52.3 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 96658717999803128999999999999999879955555300144226999999863311378535665412000665 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) |.+..+||+||.-+- ...+-....|.+.|..+++..+...-| |++.+ ...+||.++ +..-.-+ . T Consensus 1 msl~~krILlVdD~~------~~~~~l~~~L~~~g~~~~v~~a~~g~~---Al~~l-----~~~~~dlii-lD~~mP~-~ 64 (144) T 3kht_A 1 MSLRSKRVLVVEDNP------DDIALIRRVLDRKDIHCQLEFVDNGAK---ALYQV-----QQAKYDLII-LDIGLPI-A 64 (144) T ss_dssp ----CEEEEEECCCH------HHHHHHHHHHHHTTCCEEEEEESSHHH---HHHHH-----TTCCCSEEE-ECTTCGG-G T ss_pred CCCCCCEEEEEECCH------HHHHHHHHHHHHCCCCEEEEEECCHHH---HHHHH-----HHCCCCEEE-ECCCCCC-C T ss_conf 998899899995899------999999999996899829999899999---99999-----717999999-8699999-9 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 246789999999999999743997056542558899999950 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) +=++ +.+.|.+......+||+. +|..+......++ T Consensus 65 ~G~e-----l~~~ir~~~~~~~iPiI~--lS~~~~~~~~~~a 99 (144) T 3kht_A 65 NGFE-----VMSAVRKPGANQHTPIVI--LTDNVSDDRAKQC 99 (144) T ss_dssp CHHH-----HHHHHHSSSTTTTCCEEE--EETTCCHHHHHHH T ss_pred CHHH-----HHHHHHHCCCCCCCCEEE--EECCCCHHHHHHH T ss_conf 9999-----999998378789991899--9888999999999 No 115 >3g1w_A Sugar ABC transporter; sugar-binding protein, target 11229F, transport protein, structural genomics, PSI-2; 2.02A {Bacillus halodurans c-125} Probab=37.40 E-value=22 Score=15.95 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=60.1 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH-HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 71799980312899999999999999987995555530-01442269999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V-PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .+++++.. -.......-.+|+++.+++.+-..+++.+ .+.++...+.+.+.+......++|++++. .| T Consensus 128 ~~~~~~~~-~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~I~~~----------~d 196 (305) T 3g1w_A 128 GEVAVITL-PNQLNHQERTTGFKETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIFAT----------EA 196 (305) T ss_dssp EEEEEEEC-TTCHHHHHHHHHHHHHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEEES----------SH T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEC----------CC T ss_conf 75178522-43217889999999999986899731123147875788999999998508986079955----------84 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC---------CCCHHHHHHHHHHHH Q ss_conf 899999999999997439970565425588999999506565---------745699999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH---------LDRGGCAARSALAMI 141 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~---------~nkG~eaa~Aal~mi 141 (149) ..+..+.+++.+..+..+++ |++.+...++.+...... ..-|+.|++.+++++ T Consensus 197 ~~a~g~~~al~~~g~~~~v~----vvg~d~~~~~~~~i~~g~i~atv~~~~~~~G~~av~~l~~~~ 258 (305) T 3g1w_A 197 NGGVGVGDAVRLESRAGEIQ----IISFDTDKGTLDLVDEGIISATLAQGTWNMGYWSLTYLFHLH 258 (305) T ss_dssp HHHHHHHHHHHHTTCTTTSE----EEEESCCHHHHHHHHTTSSCEEEEECHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHCCCCCCEE----EEEECCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHH T ss_conf 89999999999759999829----999489899999998599569992899999999999999997 No 116 >2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston bacterial structural genomics initiative, BSGI; 1.80A {Escherichia coli O157} PDB: 2b3d_A* Probab=36.86 E-value=22 Score=15.90 Aligned_cols=53 Identities=17% Similarity=0.147 Sum_probs=34.4 Q ss_pred CCEEEEEEECH-----HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH Q ss_conf 87179998031-----289999999999999998799555553001442269999998 Q gi|254780346|r 5 IPHVLIIEARF-----YENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVM 57 (149) Q Consensus 5 ~~kI~IV~s~~-----~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~ 57 (149) .+||+||.+.= +.-+...|++.+.+.+.+.+.+++.+..-.-+++..-.+++. T Consensus 12 ~~nILII~ahP~~~~S~~~ln~al~~~~~~~l~~~g~~v~~~~~~~~~dv~~e~~~l~ 69 (204) T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFL 69 (204) T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHH T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHH T ss_conf 8748999898996536348999999999989987698899970677889999999998 No 117 >1g2i_A Protease I; intracellular protease, ATP-independent intracellular protease, catalytical triad, PFPI, cysteine protease, nucleophIle elbow; 2.00A {Pyrococcus horikoshii} SCOP: c.23.16.2 Probab=36.63 E-value=15 Score=16.95 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=49.9 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 179998031289999999999999998799555553-----001442269999998633113785356654120006652 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) ||+|+...-+++.- +....+.|.+.|+++..+. |.+..-++......+. .....+||+++.-|-- | . T Consensus 2 kI~il~~~gf~~~E---~~~~~~~l~~~g~~v~~vs~~~~~v~~~~g~~v~~d~~l~-~~~~~~~d~liipGG~--~--~ 73 (166) T 1g2i_A 2 KVLFLTANEFEDVE---LIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFD-KVNPEEFDALVLPGGR--A--P 73 (166) T ss_dssp EEEEECCTTBCHHH---HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGG-GCCGGGCSEEEECCBS--H--H T ss_pred EEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEECCCCEEECCCCCEEECCCCHH-HCCCCCCCEEEECCCC--C--H T ss_conf 89999589858999---9999999998899899992898648748995795375578-9792008789984653--0--4 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCE Q ss_conf 4678999999999999974399705 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIG 106 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~ 106 (149) +. +-.+.-...+.+-..+.+.||+ T Consensus 74 ~~-~~~~~~l~~~l~~~~~~~k~i~ 97 (166) T 1g2i_A 74 ER-VRLNEKAVSIARKMFSEGKPVA 97 (166) T ss_dssp HH-HTTCHHHHHHHHHHHHTTCCEE T ss_pred HH-HCCCHHHHHHHHHHHHCCCEEE T ss_conf 44-2158788999999986499998 No 118 >1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A Probab=34.91 E-value=22 Score=15.91 Aligned_cols=37 Identities=8% Similarity=0.114 Sum_probs=21.7 Q ss_pred CCCCEEEEEEEC--HHH--HHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 658717999803--128--999999999999999879955555 Q gi|254780346|r 3 VFIPHVLIIEAR--FYE--NLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 3 ~~~~kI~IV~s~--~~~--~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) +.||||+|+-|. ++. |..+ +-...+.|.+.|++++.+ T Consensus 4 ~~MKKvaviLsg~g~~DG~E~~E--~~~p~~~L~raG~~V~~~ 44 (232) T 1vhq_A 4 ITMKKIGVILSGCGVYDGSEIHE--AVLTLLAISRSGAQAVCF 44 (232) T ss_dssp --CCEEEEECCSBSTTTSBCHHH--HHHHHHHHHHTTCEEEEE T ss_pred CCCCEEEEEECCCCCCCCHHHHH--HHHHHHHHHHCCCEEEEE T ss_conf 56675999966887877502989--999999999889979999 No 119 >1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} SCOP: c.23.8.1 Probab=34.78 E-value=24 Score=15.69 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=68.1 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 65871799980312899999999999999987995555530014422699999986331137853566541200066524 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) -.+||++||.++--..- -.+.|.+.|+++|++++. .|-++...|--...+++.. ....++.+|+. -|-..| T Consensus 11 ~~~PkV~Ii~GS~SD~~---~~~~a~~~L~~~Gi~~e~-~V~SaHR~p~~l~~~~~~~-~~~~~~ViIa~----AG~aaa 81 (183) T 1o4v_A 11 HHVPRVGIIMGSDSDLP---VMKQAAEILEEFGIDYEI-TIVSAHRTPDRMFEYAKNA-EERGIEVIIAG----AGGAAH 81 (183) T ss_dssp ---CEEEEEESCGGGHH---HHHHHHHHHHHTTCEEEE-EECCTTTCHHHHHHHHHHT-TTTTCCEEEEE----EESSCC T ss_pred CCCCEEEEEECCHHHHH---HHHHHHHHHHHCCCCEEE-EEEHHHHCHHHHHHHHHHH-HHCCCEEEEEE----CCCCCC T ss_conf 89995999968574399---999999999982991799-8743750938899999999-97798599996----467668 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC--HHHH---HHHHCC----C--CCCCHHHHHHHHHHHHHH Q ss_conf 67899999999999997439970565425588--9999---995065----6--574569999999999999 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDS--EQQA---FDRVSP----S--HLDRGGCAARSALAMIEL 143 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n--~~QA---~~R~~~----~--~~nkG~eaa~Aal~mi~l 143 (149) -- .+ ++-.+.+|++-.=.-... -..+ .-..-. - .-++|..||..|.+|+.+ T Consensus 82 Lp----gv------vA~~t~~PVIgVP~~~~~~~G~daLlS~lqMP~gvpVatV~Id~~~nAal~A~~Ilal 143 (183) T 1o4v_A 82 LP----GM------VASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNAGILAASILGI 143 (183) T ss_dssp HH----HH------HHHHCSSCEEEEEECCTTTTTHHHHHHHHTCCTTCCCEECCTTCHHHHHHHHHHHHHT T ss_pred CC----CE------EEEECCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHC T ss_conf 87----54------8873261178611577788767778876018888876777547647899999999956 No 120 >2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2a str} SCOP: c.23.5.4 Probab=33.77 E-value=25 Score=15.59 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=29.7 Q ss_pred CCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 87179998031289-9999999999999987995555530 Q gi|254780346|r 5 IPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 5 ~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) .+||+++.++.-+. .+..+++-+.+.+.+.|++.+.+.. T Consensus 58 p~KIL~i~GS~R~~S~~~~la~~aa~~l~~~GaeveiiDL 97 (279) T 2fzv_A 58 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDP 97 (279) T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEECC T ss_conf 9869999798998785799999999999876986999776 No 121 >3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} Probab=32.69 E-value=26 Score=15.48 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=67.8 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 66587179998031289999999999999998799555553001442269999998633113785356654120006652 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) |-|.+|++|+-.+--.. ...+.+.+.|+++|++++.. |-++-.-|--...+++.. ....++.+|+. -|-.. T Consensus 2 ~~~~~kV~IimGS~SD~---~~~~~a~~~L~~~gI~~e~~-V~SAHRtp~~l~~~~~~~-~~~~~~ViIa~----AG~aa 72 (166) T 3oow_A 2 NAMSVQVGVIMGSKSDW---STMKECCDILDNLGIGYECE-VVSAHRTPDKMFDYAETA-KERGLKVIIAG----AGGAA 72 (166) T ss_dssp ---CEEEEEEESSGGGH---HHHHHHHHHHHHTTCEEEEE-ECCTTTCHHHHHHHHHHT-TTTTCCEEEEE----ECSSC T ss_pred CCCCCCEEEEECCHHHH---HHHHHHHHHHHHCCCCEEEE-EECCCCCHHHHHHHHHHH-HHCCCEEEEEE----CCCCC T ss_conf 98987389997878689---99999999999849945888-881607989999999999-85597499980----57764 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCC---HHH--HHHHH--CC------CCCCCHHHHHHHHHHHHHHH Q ss_conf 467899999999999997439970565425588---999--99950--65------65745699999999999999 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDS---EQQ--AFDRV--SP------SHLDRGGCAARSALAMIELK 144 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n---~~Q--A~~R~--~~------~~~nkG~eaa~Aal~mi~l~ 144 (149) |--=+. +-.+.+||+-.=....+ .+- +.-+. +. =..+.|..||..|.+++.+. T Consensus 73 ~LpGvv----------a~~t~~PVIgVP~~~~~l~G~d~llS~vqMP~GvPVatvavg~~~~~NAallA~~Ilal~ 138 (166) T 3oow_A 73 HLPGMV----------AAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHT 138 (166) T ss_dssp CHHHHH----------HHTCSSCEEEEECCCTTTTTHHHHHHHHTCCTTSCCEECCSTHHHHHHHHHHHHHHHGGG T ss_pred CCCCHH----------HHCCCCCEEEECCCCCCCCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHCCC T ss_conf 454117----------663688868630454567772128999709878984478627764278999999998479 No 122 >3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} Probab=29.85 E-value=29 Score=15.18 Aligned_cols=122 Identities=16% Similarity=0.130 Sum_probs=70.6 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHH Q ss_conf 58717999803128999999999999999879955555300144226999999863311378535665412000665246 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHC 83 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~ 83 (149) .+||++||..+--. ..-.+.+.+.|+++|++++ +.|-++...|-....+.+... ...++.||+. -|-..|- T Consensus 6 ~kPkV~IimGS~SD---~~~~~~a~~~L~~~gI~~e-~~V~SAHR~p~~l~~~~~~~~-~~g~~ViIa~----AG~aa~L 76 (174) T 3lp6_A 6 ERPRVGVIMGSDSD---WPVMADAAAALAEFDIPAE-VRVVSAHRTPEAMFSYARGAA-ARGLEVIIAG----AGGAAHL 76 (174) T ss_dssp CCCSEEEEESCGGG---HHHHHHHHHHHHHTTCCEE-EEECCTTTCHHHHHHHHHHHH-HHTCCEEEEE----EESSCCH T ss_pred CCCEEEEEECCHHH---HHHHHHHHHHHHHCCCCEE-EEEECCCCCHHHHHHHHHHHH-HCCCEEEEEC----CCCCCCC T ss_conf 99969999796846---9999999999998399636-878647458689999999998-5698699971----5675344 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCCH--HHHHHH-HC-CC-------CCCCHHHHHHHHHHHHHHH Q ss_conf 78999999999999974399705654255889--999995-06-56-------5745699999999999999 Q gi|254780346|r 84 DVIAHAVTRGLVDLSINGSLPIGNGIVVVDSE--QQAFDR-VS-PS-------HLDRGGCAARSALAMIELK 144 (149) Q Consensus 84 e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~--~QA~~R-~~-~~-------~~nkG~eaa~Aal~mi~l~ 144 (149) -=+ ++-.+.+||+..=.-.... ..++-- .. +. .-|+|..||..|.+++.+. T Consensus 77 ~gv----------vA~~t~~PVIgvP~~~~~~~g~dallS~vqMP~GvpVatv~I~~~~NAAl~A~qILal~ 138 (174) T 3lp6_A 77 PGM----------VAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNAGLLAVRMLGAA 138 (174) T ss_dssp HHH----------HHHHCSSCEEEEEECCSSGGGHHHHHHHHCCCTTCCCEECCTTCHHHHHHHHHHHHHTT T ss_pred CCH----------HHHCCCCCEEECCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCC T ss_conf 005----------55546887794557767767732077798589988667775377589999999998458 No 123 >3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} Probab=29.40 E-value=29 Score=15.14 Aligned_cols=97 Identities=12% Similarity=0.067 Sum_probs=48.6 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 658717999803128999999999999999879955555300------14422699999986331137853566541200 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~EiP~a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) -|+|||+|+.+.-+++.- +....+.|...|++++.+.+. ++.-+.......+. .....+||+++.-|.. T Consensus 7 ~m~kkv~i~v~~Gf~~~E---~~~p~~vLrrag~~v~~~s~~~~~~V~~~~G~~i~~d~~l~-d~~~~d~d~liipGg~- 81 (208) T 3ot1_A 7 GMSKRILVPVAHGSEEME---TVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLE-ACSAEAFDALALPGGV- 81 (208) T ss_dssp --CCEEEEEECTTCCHHH---HHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGG-GCCGGGCSEEEECCCH- T ss_pred CCCCEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEECCCCCCEEECCCCEEECCCCHH-HCCCCCCEEEEECCCC- T ss_conf 788669999579972999---99999999988998999987999617708998896577757-7570242799816777- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 0665246789999999999999743997056 Q gi|254780346|r 77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) .....+--+.-...+.+-..+.+.+++. T Consensus 82 ---~~~~~l~~~~~l~~~lr~~~~~~~~i~a 109 (208) T 3ot1_A 82 ---GGAQAFADSTALLALIDAFSQQGKLVAA 109 (208) T ss_dssp ---HHHHHHHTCHHHHHHHHHHHHTTCEEEE T ss_pred ---CHHHHHHCCHHHHHHHHHHHHCCCCCCH T ss_conf ---5576650599999999987542762000 No 124 >2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A Probab=28.75 E-value=30 Score=15.07 Aligned_cols=36 Identities=8% Similarity=0.147 Sum_probs=23.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8717999803128999999999999999879955555 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) |+||.|+.++=+-. ++.+-+...+.|.+.|++...+ T Consensus 1 Ma~i~I~ygS~tG~-te~~A~~l~~~l~~~g~~v~~~ 36 (147) T 2hna_A 1 MADITLISGSTLGG-AEYVAEHLAEKLEEAGFTTETL 36 (147) T ss_dssp CCSEEEECCTTSCC-CHHHHHHHHHHHHHTTCCEEEE T ss_pred CCCEEEEEECCCCH-HHHHHHHHHHHHHHCCCEEEEE T ss_conf 99579999999747-9999999999999879907863 No 125 >3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A* Probab=28.30 E-value=31 Score=15.02 Aligned_cols=36 Identities=11% Similarity=0.142 Sum_probs=25.0 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8717999803128999999999999999879955555 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) |+||+|++++-+-. ++.+-+...+.|.+.|++.+.+ T Consensus 1 M~ki~I~y~S~tGn-te~~A~~l~~~l~~~g~~v~~~ 36 (148) T 3f6r_A 1 MSKVLIVFGSSTGN-TESIAQKLEELIAAGGHEVTLL 36 (148) T ss_dssp -CEEEEEEECSSSH-HHHHHHHHHHHHHTTTCEEEEE T ss_pred CCEEEEEEECCCCH-HHHHHHHHHHHHHHCCCCCCCC T ss_conf 97399999998607-9999999999998669952246 No 126 >3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI- II, NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis nctc 9343} Probab=27.95 E-value=31 Score=14.98 Aligned_cols=38 Identities=21% Similarity=0.417 Sum_probs=25.7 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC-EEEEEH Q ss_conf 65871799980312899999999999999987995-555530 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ-WSSIVT 43 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~-~~~i~V 43 (149) -|||+|.||...||+. ..+..+.+.+..+... .+++.| T Consensus 2 ~~~p~isIiIptyN~~---~~l~~~l~Si~~q~~~~~eiIIv 40 (240) T 3bcv_A 2 SLIPKVSVIVPIYNVE---KYLDQCVQALLAQTLSDIEIILI 40 (240) T ss_dssp -CCCSEEEEEEESSCT---TTHHHHHHHHHTCSSSSEEEEEE T ss_pred CCCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCCEEEEEE T ss_conf 9899069999737888---99999999998087988599999 No 127 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Probab=27.84 E-value=31 Score=14.97 Aligned_cols=87 Identities=18% Similarity=0.175 Sum_probs=60.9 Q ss_pred HHHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH-------HHHHHHHHHHH Q ss_conf 9999999879955555--30014422699999986331137853566541200066524678-------99999999999 Q gi|254780346|r 26 GCVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV-------IAHAVTRGLVD 96 (149) Q Consensus 26 ga~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~-------I~~~v~~gl~~ 96 (149) ...+.|.+.|+..-.+ +.|+++|.- +.+. +.+..|-.|.|..-|+-+-=. ||-.....+.+ T Consensus 29 ~~~~al~~~Gi~~iEitl~tp~a~~~i---~~l~-------~~~~~iGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~ 98 (207) T 2yw3_A 29 GLARVLEEEGVGALEITLRTEKGLEAL---KALR-------KSGLLLGAGTVRSPKEAEAALEAGAAFLVSPGLLEEVAA 98 (207) T ss_dssp HHHHHHHHTTCCEEEEECSSTHHHHHH---HHHT-------TSSCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCCHHHHHH---HHHC-------CCCCEEEEHHCCCHHHHHHHHHCCCCEEECCCCCHHHHH T ss_conf 999999987998899968992299999---9854-------578589311205778999999809998985888699999 Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 99743997056542558899999950 Q gi|254780346|r 97 LSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 97 lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .+.++++|.+=|+.|+....||++.- T Consensus 99 ~a~~~~i~~iPGv~TpsEi~~A~~~G 124 (207) T 2yw3_A 99 LAQARGVPYLPGVLTPTEVERALALG 124 (207) T ss_dssp HHHHHTCCEEEEECSHHHHHHHHHTT T ss_pred HHHHCCCCEECCCCCHHHHHHHHHCC T ss_conf 99962997517879999999999769 No 128 >2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B* Probab=27.49 E-value=32 Score=14.93 Aligned_cols=36 Identities=8% Similarity=-0.021 Sum_probs=22.3 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 8717999803128999999999999999879955555 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i 41 (149) |-+|++|.+.-|+ .-..+.+|+.+..++.|+++..+ T Consensus 1 ~~~ig~v~~~~nP-f~~~~~~G~~~aa~~~g~~l~~~ 36 (313) T 2h3h_A 1 MLTIGVIGKSVHP-YWSQVEQGVKAAGKALGVDTKFF 36 (313) T ss_dssp CCEEEEECSCSSH-HHHHHHHHHHHHHHHHTCEEEEE T ss_pred CEEEEEECCCCCH-HHHHHHHHHHHHHHHCCCEEEEE T ss_conf 9699995899997-99999999999999809979999 No 129 >2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: FMN; 2.00A {Enterococcus faecalis} Probab=27.13 E-value=32 Score=14.89 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=24.4 Q ss_pred CCEEEEEEECH-H--HHHHHHHHHHHHHHHHHC--CCCEEEEE Q ss_conf 87179998031-2--899999999999999987--99555553 Q gi|254780346|r 5 IPHVLIIEARF-Y--ENLSAMLFEGCVNVLHSR--AVQWSSIV 42 (149) Q Consensus 5 ~~kI~IV~s~~-~--~~i~~~ll~ga~~~l~~~--~~~~~~i~ 42 (149) |+||++|.+.= . .-.+..|.+.+.+.+++. +.+++.++ T Consensus 1 M~kiL~I~asP~~~~~S~s~~l~~~f~~~~~~~~~~~eV~~~D 43 (208) T 2hpv_A 1 MSKLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILD 43 (208) T ss_dssp -CEEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEE T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 9869999968999987889999999999999868999799998 No 130 >1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein structure initiative; HET: TLA; 1.50A {Streptococcus pneumoniae TIGR4} SCOP: c.23.5.5 PDB: 2oys_A* Probab=26.45 E-value=33 Score=14.81 Aligned_cols=37 Identities=14% Similarity=0.094 Sum_probs=27.3 Q ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHHHHHCC-CCEEEE Q ss_conf 8717999803128-999999999999999879-955555 Q gi|254780346|r 5 IPHVLIIEARFYE-NLSAMLFEGCVNVLHSRA-VQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~-~~~~~i 41 (149) |+||+|+.++-.+ .-|..|.+-..+.|.+.+ ++++.+ T Consensus 1 MkkIlii~gS~r~~s~T~~l~~~~~~~l~~~~~~e~e~i 39 (242) T 1sqs_A 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFR 39 (242) T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEE T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 978999989899998699999999999863499279999 No 131 >1o63_A ATP phosphoribosyltransferase; structural genomics; 2.00A {Thermotoga maritima} SCOP: c.94.1.1 PDB: 1o64_A 1usy_E* 1usy_H* Probab=26.36 E-value=33 Score=14.80 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.1 Q ss_pred HHHHHHHCCCCEEEEEHHHHHHHH Q ss_conf 999999879955555300144226 Q gi|254780346|r 27 CVNVLHSRAVQWSSIVTPGVLEIP 50 (149) Q Consensus 27 a~~~l~~~~~~~~~i~VPGa~EiP 50 (149) +.+.|.+.|++++++...||.|+. T Consensus 114 t~~ff~~~gi~~~ii~l~GavE~A 137 (219) T 1o63_A 114 TQRYCESKGWHCRIIPLKGSVELA 137 (219) T ss_dssp HHHHHHHHTCCEEEEECSSCTTHH T ss_pred HHHHHHHCCCCEEEEECCCCCCCC T ss_conf 999999839934899756977678 No 132 >1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ... Probab=26.31 E-value=33 Score=14.80 Aligned_cols=36 Identities=19% Similarity=0.118 Sum_probs=25.5 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE Q ss_conf 7179998031289999999999999998799555553 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV 42 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~ 42 (149) |||+|+.++-+-. ++.+-+...+.|.+.|++++++. T Consensus 1 pki~I~Y~S~tG~-te~~A~~la~~l~~~g~~v~~~~ 36 (147) T 1f4p_A 1 PKALIVYGSTTGN-TEYTAETIARELADAGYEVDSRD 36 (147) T ss_dssp CEEEEEEECSSSH-HHHHHHHHHHHHHHHTCEEEEEE T ss_pred CCEEEEEECCCHH-HHHHHHHHHHHHHHCCCCCCCCC T ss_conf 9599999998638-99999999999887598301023 No 133 >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Probab=25.70 E-value=19 Score=16.28 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=34.8 Q ss_pred HHHHHHHHHHHHHHHCCCCEE----EEEHHHHHHHHHHHHHHHHHHH-----CCCCCCEEEEEEEEECC Q ss_conf 999999999999998799555----5530014422699999986331-----13785356654120006 Q gi|254780346|r 19 LSAMLFEGCVNVLHSRAVQWS----SIVTPGVLEIPAAVSMVMNAKT-----RSVTYDGIIVLGVVMRG 78 (149) Q Consensus 19 i~~~ll~ga~~~l~~~~~~~~----~i~VPGa~EiP~a~~~~~~~~~-----~~~~~D~vIaLG~VIkG 78 (149) +.++..+-..+.|++++.+.+ ++-|=|+-.+|..-+.+-+... .+.++|-.||.||-+.+ T Consensus 309 l~~r~~~~i~~~L~~a~~~~~dId~V~LvGGssriP~V~~~l~~~f~~~~~~~~in~deaVa~GAA~~a 377 (554) T 1yuw_A 309 LFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 377 (554) T ss_dssp HHHHTTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 999999999999998299988897899989837437799999998199888888795067899899999 No 134 >3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus} Probab=25.54 E-value=34 Score=14.71 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=28.2 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 5871799980312899999999999999987995555 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS 40 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~ 40 (149) +++-|++|...+....-..+++|..+.+.++|+..-. T Consensus 9 kS~~Igvi~p~~~~~~~~~ll~gi~~~~~~~gy~~~i 45 (277) T 3hs3_A 9 KSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALI 45 (277) T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEE T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 8988999908898989999999999999985998999 No 135 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=24.24 E-value=36 Score=14.56 Aligned_cols=69 Identities=12% Similarity=-0.016 Sum_probs=42.5 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 6587179998031289999999999999998799555553001442269999998633113785356654120006652 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) ...+||+||..+.|- -|+.|.+...+.+.+.|++.+.+.+...- .......+ .++|+ +.+|+-.-+... T Consensus 254 ~~~~kv~Ivy~S~~G-nT~~~A~~i~~~~~~~g~~~~~~~~~~~~-~~~~~~~~-------~~~d~-ii~Gspt~~~~~ 322 (404) T 2ohh_A 254 MVDERVTVIYDTMHG-STRKMAHAIAEGAMSEGVDVRVYCLHEDD-RSEIVKDI-------LESGA-IALGAPTIYDEP 322 (404) T ss_dssp CCCSEEEEEECCSSS-HHHHHHHHHHHHHHTTTCEEEEEETTTSC-HHHHHHHH-------HTCSE-EEEECCEETTEE T ss_pred CCCCCEEEEEECCCC-HHHHHHHHHHHHHHHCCCCEEEEEECCCC-HHHHHHHH-------HHCCC-EEEECCCCCCCC T ss_conf 557626289855865-79999999999887579818999925889-78889999-------85795-599636517846 No 136 >3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Probab=23.96 E-value=27 Score=15.34 Aligned_cols=60 Identities=8% Similarity=0.086 Sum_probs=26.6 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 871799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||....-..+. +...+.|+..++..++..-|..=++--+++. .+..+.|.+|++| T Consensus 37 ~~rvliv~g~~~~~~~----~~~~~~l~~~~~~~~v~~~p~~~~v~~~~~~-----~~~~~~D~IiavG 96 (364) T 3iv7_A 37 SAKVMVIAGEREMSIA----HKVASEIEVAIWHDEVVMHVPIEVAERARAV-----ATDNEIDLLVCVG 96 (364) T ss_dssp CSSEEEECCGGGHHHH----HHHTTTSCCSEEECCCCTTCBHHHHHHHHHH-----HHHTTCCEEEEEE T ss_pred CCEEEEEECCCHHHHH----HHHHHHHHHCEEECCCCCCCCHHHHHHHHHH-----HHHCCCCEEEEEC T ss_conf 9759999387456399----9999871120885664269699999999999-----9865999899945 No 137 >3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola} Probab=22.79 E-value=39 Score=14.38 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=18.4 Q ss_pred CCEEEEEEECHHHH---HHHHHHHHHHHHHHHCCCCEEEE Q ss_conf 87179998031289---99999999999999879955555 Q gi|254780346|r 5 IPHVLIIEARFYEN---LSAMLFEGCVNVLHSRAVQWSSI 41 (149) Q Consensus 5 ~~kI~IV~s~~~~~---i~~~ll~ga~~~l~~~~~~~~~i 41 (149) |+||+||.+.=+.+ ....+ .+.+.+.+.+++.. T Consensus 1 M~KiLvi~ahP~~~~s~~~~~~----~~~~~~~~~~v~~~ 36 (192) T 3f2v_A 1 MPKTLIILAHPNISQSTVHKHW----SDAVRQHTDRFTVH 36 (192) T ss_dssp -CCEEEEECCTTGGGCSHHHHH----HHHHTTCTTTEEEE T ss_pred CCEEEEEEECCCCHHHHHHHHH----HHHHHHCCCCEEEE T ss_conf 9759999808992357999999----99999559963999 No 138 >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Probab=22.06 E-value=33 Score=14.86 Aligned_cols=61 Identities=16% Similarity=0.271 Sum_probs=35.7 Q ss_pred HHHHHHHHHHHHHHHHHCCCCEE----EEEHHHHHHHHHHHHHHHHHHHC----CCCCCEEEEEEEEEC Q ss_conf 89999999999999998799555----55300144226999999863311----378535665412000 Q gi|254780346|r 17 ENLSAMLFEGCVNVLHSRAVQWS----SIVTPGVLEIPAAVSMVMNAKTR----SVTYDGIIVLGVVMR 77 (149) Q Consensus 17 ~~i~~~ll~ga~~~l~~~~~~~~----~i~VPGa~EiP~a~~~~~~~~~~----~~~~D~vIaLG~VIk 77 (149) +++.++..+-..+.|++.+.+.+ ++-|=|+-.+|..-+.+-+.... +-++|-.||.||-+. T Consensus 279 ~~~~~~~~~~i~~~l~~a~~~~~~I~~V~LvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAai~ 347 (509) T 2v7y_A 279 AHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQ 347 (509) T ss_dssp HHHHHTTHHHHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH T ss_conf 999999999999999983999899968999897047689999999985889677978101899999999 No 139 >3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua} Probab=21.34 E-value=42 Score=14.20 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=51.4 Q ss_pred CCCCEEEEEEEC-------HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 658717999803-------1289999999999999998799555553001442269999998633113785356654120 Q gi|254780346|r 3 VFIPHVLIIEAR-------FYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 3 ~~~~kI~IV~s~-------~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) -|+|-|+|...+ |+..-.+-+-....+.+...|...-.+ |- .-|.....++ .+.||++.-|-= T Consensus 2 ~~rPvIGI~~~~~~~~~~~~~~~~~~yi~~~yv~~l~~aGa~pv~i--p~--~~~~~~~~~l------~~~DGvll~GG~ 71 (254) T 3fij_A 2 SLKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIAL--PI--DDPSTAVQAI------SLVDGLLLTGGQ 71 (254) T ss_dssp -CCCEEEEEC------------------CHHHHHHHHHHTCEEEEE--CC--CCGGGHHHHH------HTCSEEEECCCS T ss_pred CCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEE--CC--CCHHHHHHHH------HHCCEEEECCCC T ss_conf 9999999989810046776576088999999999999869989997--58--9858899888------656949965887 Q ss_pred -E----CCC-----CCHHHHHHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf -0----066-----524678999999999999974399705654 Q gi|254780346|r 76 -M----RGK-----TAHCDVIAHAVTRGLVDLSINGSLPIGNGI 109 (149) Q Consensus 76 -I----kGe-----T~H~e~I~~~v~~gl~~lsl~~~~PI~~gI 109 (149) + -|+ +.-++..-+..-..+.+-.++.++|| +|| T Consensus 72 dv~p~~yg~~~~~~~~~~~~~Rd~~e~~li~~a~~~~~Pi-lGI 114 (254) T 3fij_A 72 DITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKPI-FAI 114 (254) T ss_dssp CCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCCE-EEE T ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEE T ss_conf 7875546877875458876556899999999999859988-998 No 140 >3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} Probab=21.32 E-value=42 Score=14.20 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=30.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-H---HHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031289999999999999998799555553-0---014422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-T---PGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-V---PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||.+.......+ ...+.|.+. .+.++. + |-.-.+--+++.. +..++|.||++| T Consensus 34 ~~r~livt~~~~~~~~~----~v~~~l~~~--~~~v~~~v~~~p~~~~v~~~~~~~-----~~~~~D~IiavG 95 (353) T 3hl0_A 34 LSRALVLSTPQQKGDAE----ALASRLGRL--AAGVFSEAAMHTPVEVTKTAVEAY-----RAAGADCVVSLG 95 (353) T ss_dssp CCCEEEECCGGGHHHHH----HHHHHHGGG--EEEEECCCCTTCBHHHHHHHHHHH-----HHTTCSEEEEEE T ss_pred CCEEEEEECCCCCCHHH----HHHHHHCCC--CEEEEECCCCCCCHHHHHHHHHHH-----HHCCCCEEEEEC T ss_conf 98699997831213799----999986068--808996251699989999999999-----963998899958 No 141 >2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural genomics consortium, NESG, structural genomics; NMR {Shewanella oneidensis mr-1} SCOP: a.284.1.1 PDB: 2qti_A Probab=20.81 E-value=43 Score=14.13 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=25.7 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 98031289999999999999998799555 Q gi|254780346|r 11 IEARFYENLSAMLFEGCVNVLHSRAVQWS 39 (149) Q Consensus 11 V~s~~~~~i~~~ll~ga~~~l~~~~~~~~ 39 (149) +.|+|..+-++.++..-...|++++++.| T Consensus 3 i~SKYsd~qvE~il~el~~VLeKH~Ap~D 31 (80) T 2juw_A 3 IQSKYSNTQVESLIAEILVVLEKHKAPTD 31 (80) T ss_dssp CCCSSCHHHHHHHHHHHHHHHHHTTCCHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 64314488999999999999986599931 Done!