Query gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] Match_columns 149 No_of_seqs 114 out of 1909 Neff 5.8 Searched_HMMs 13730 Date Wed Jun 1 03:06:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780346.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1c2ya_ c.16.1.1 (A:) Lumazine 100.0 0 0 337.6 18.1 143 3-149 11-155 (155) 2 d1nqua_ c.16.1.1 (A:) Lumazine 100.0 0 0 335.7 17.8 143 2-148 9-154 (154) 3 d1c41a_ c.16.1.1 (A:) Lumazine 100.0 0 0 333.2 18.8 148 2-149 8-192 (195) 4 d1rvv1_ c.16.1.1 (1:) Lumazine 100.0 0 0 334.0 18.0 142 3-148 10-154 (154) 5 d1ejba_ c.16.1.1 (A:) Lumazine 100.0 0 0 329.3 18.1 146 1-146 12-165 (168) 6 d1di0a_ c.16.1.1 (A:) Lumazine 100.0 0 0 328.1 11.8 140 5-148 2-147 (148) 7 d1kz1a_ c.16.1.1 (A:) Lumazine 100.0 0 0 316.7 17.8 137 1-141 5-146 (150) 8 d1dbqa_ c.93.1.1 (A:) Purine r 91.9 0.42 3.1E-05 25.1 7.7 64 6-74 1-65 (282) 9 d1jyea_ c.93.1.1 (A:) Lac-repr 88.3 0.83 6.1E-05 23.2 7.5 99 6-117 119-217 (271) 10 d1d4aa_ c.23.5.3 (A:) NAD(P)H: 87.8 0.46 3.3E-05 24.8 5.0 40 4-43 1-41 (273) 11 d1guda_ c.93.1.1 (A:) D-allose 83.0 1.5 0.00011 21.6 7.2 66 6-73 2-67 (288) 12 d1rrma_ e.22.1.2 (A:) Lactalde 82.0 1.6 0.00011 21.5 5.6 63 5-73 30-95 (385) 13 d2nzug1 c.93.1.1 (G:58-332) Gl 79.2 2.1 0.00015 20.8 8.2 68 4-76 2-70 (275) 14 d1tjya_ c.93.1.1 (A:) AI-2 rec 78.7 2.1 0.00016 20.7 6.4 68 4-74 2-69 (316) 15 d1p80a1 c.23.16.3 (A:598-753) 76.5 0.44 3.2E-05 24.9 1.3 95 3-107 1-100 (156) 16 d2a5la1 c.23.5.8 (A:3-198) Trp 76.1 2.1 0.00015 20.8 4.7 40 5-45 1-40 (196) 17 d8abpa_ c.93.1.1 (A:) L-arabin 74.7 2.8 0.0002 20.0 8.8 32 7-38 3-34 (305) 18 d1qvwa_ c.23.16.2 (A:) Hypothe 74.6 2.3 0.00017 20.5 4.6 99 5-107 2-135 (236) 19 d1u9ca_ c.23.16.2 (A:) GK2698 74.2 2.8 0.00021 19.9 8.2 99 4-107 1-124 (221) 20 d1p5fa_ c.23.16.2 (A:) DJ-1 {H 72.9 1.7 0.00012 21.4 3.6 95 5-107 1-102 (186) 21 d1ycga1 c.23.5.1 (A:251-399) N 71.0 3.4 0.00025 19.5 9.1 67 5-83 2-70 (149) 22 d1ydga_ c.23.5.8 (A:) Trp repr 68.6 3.8 0.00028 19.2 4.6 38 6-44 3-40 (201) 23 d2qwxa1 c.23.5.3 (A:1-230) Qui 65.6 4.4 0.00032 18.8 4.7 38 6-43 3-41 (230) 24 d1jq5a_ e.22.1.2 (A:) Glycerol 65.2 4.4 0.00032 18.8 6.6 63 6-73 31-93 (366) 25 d2arka1 c.23.5.8 (A:1-184) Fla 64.7 4.4 0.00032 18.7 4.3 39 5-45 1-41 (184) 26 d2qv7a1 e.52.1.2 (A:1-312) Dia 63.9 4.7 0.00034 18.6 5.9 102 4-124 1-103 (312) 27 d1e5da1 c.23.5.1 (A:251-402) R 61.9 5.1 0.00037 18.4 8.2 38 5-44 2-40 (152) 28 d1vhca_ c.1.10.1 (A:) Hypothet 60.1 3.7 0.00027 19.3 3.2 87 27-121 31-126 (212) 29 d1mxsa_ c.1.10.1 (A:) KDPG ald 58.2 4.3 0.00031 18.8 3.3 85 27-121 34-129 (216) 30 d1byka_ c.93.1.1 (A:) Trehalos 52.5 7.3 0.00053 17.4 7.8 116 6-141 116-239 (255) 31 d1vlja_ e.22.1.2 (A:) NADH-dep 50.7 7.8 0.00057 17.2 6.3 62 5-73 34-100 (398) 32 d1sy7a1 c.23.16.3 (A:553-736) 49.6 4.2 0.00031 18.9 2.1 97 3-107 1-102 (184) 33 d1wbha1 c.1.10.1 (A:1-213) KDP 48.0 4.3 0.00031 18.8 1.9 88 26-121 31-127 (213) 34 d1oi4a1 c.23.16.2 (A:23-192) H 47.9 4.3 0.00031 18.8 1.9 94 5-107 1-101 (170) 35 d1jx6a_ c.93.1.1 (A:) Quorum-s 45.7 9.3 0.00068 16.7 10.3 34 7-40 42-76 (338) 36 d1wa3a1 c.1.10.1 (A:2-203) KDP 45.1 4.6 0.00034 18.6 1.7 87 26-121 25-122 (202) 37 d2dria_ c.93.1.1 (A:) D-ribose 45.0 9.6 0.0007 16.7 11.3 35 6-40 2-36 (271) 38 d2csua3 c.23.4.1 (A:291-453) A 40.8 11 0.00081 16.3 10.9 95 52-148 65-162 (163) 39 d2f7wa1 c.57.1.1 (A:2-174) Mog 40.6 11 0.00081 16.3 3.4 80 4-90 1-87 (173) 40 d1g2ia_ c.23.16.2 (A:) Intrace 38.3 7.9 0.00057 17.2 2.0 92 7-107 2-98 (166) 41 d1o2da_ e.22.1.2 (A:) Alcohol 37.6 12 0.00091 16.0 6.4 63 5-73 28-94 (359) 42 d1sqsa_ c.23.5.5 (A:) Hypothet 37.0 13 0.00093 15.9 4.2 38 5-42 1-40 (232) 43 d2fzva1 c.23.5.4 (A:1-233) Put 36.3 13 0.00095 15.8 4.0 39 5-43 34-73 (233) 44 d1wo8a1 c.24.1.2 (A:1-126) Met 35.7 13 0.00097 15.8 5.1 106 5-122 1-123 (126) 45 d1pfka_ c.89.1.1 (A:) ATP-depe 35.3 14 0.00099 15.7 3.5 104 4-122 1-137 (320) 46 d2a9va1 c.23.16.1 (A:1-196) GM 33.8 14 0.001 15.6 7.3 88 5-123 1-90 (196) 47 d1xxla_ c.66.1.41 (A:) Hypothe 31.9 9.8 0.00072 16.6 1.7 48 18-75 45-92 (234) 48 d1dkgd2 c.55.1.1 (D:186-383) H 31.1 16 0.0012 15.3 3.7 10 44-53 156-165 (198) 49 d2bona1 e.52.1.2 (A:5-299) Lip 29.6 17 0.0012 15.2 7.5 97 6-124 1-100 (295) 50 d2ex4a1 c.66.1.42 (A:2-224) Ad 29.4 14 0.001 15.7 2.1 48 18-75 90-137 (222) 51 d1vl5a_ c.66.1.41 (A:) Hypothe 26.8 15 0.0011 15.5 1.9 20 18-37 44-63 (231) 52 d1f4pa_ c.23.5.1 (A:) Flavodox 25.0 20 0.0015 14.6 4.9 38 6-44 1-38 (147) 53 d1u11a_ c.23.8.1 (A:) N5-CAIR 24.9 20 0.0015 14.6 8.1 121 5-144 2-135 (159) 54 d1o1ya_ c.23.16.1 (A:) Hypothe 24.0 21 0.0016 14.5 4.9 94 7-125 5-103 (230) 55 d1vhqa_ c.23.16.2 (A:) Putativ 23.7 22 0.0016 14.5 2.8 36 5-40 1-38 (217) 56 d1vmea1 c.23.5.1 (A:251-398) R 22.4 23 0.0017 14.3 6.6 69 5-82 3-73 (148) 57 d2juza1 a.284.1.1 (A:1-72) Unc 21.9 21 0.0015 14.6 1.9 29 11-39 3-31 (72) 58 d2nv0a1 c.23.16.1 (A:1-195) Hy 21.7 24 0.0017 14.2 8.4 86 5-123 1-89 (195) 59 d1o63a_ c.94.1.1 (A:) ATP phos 21.4 24 0.0017 14.2 2.6 24 27-50 112-135 (203) 60 d1wzna1 c.66.1.43 (A:1-251) Hy 20.8 25 0.0018 14.1 2.2 78 18-114 70-147 (251) 61 d2fvya1 c.93.1.1 (A:2-306) Gal 20.0 26 0.0019 14.0 10.7 124 6-142 140-273 (305) No 1 >d1c2ya_ c.16.1.1 (A:) Lumazine synthase {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=100.00 E-value=0 Score=337.59 Aligned_cols=143 Identities=24% Similarity=0.413 Sum_probs=135.2 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC--EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCC Q ss_conf 65871799980312899999999999999987995--5555300144226999999863311378535665412000665 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ--WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKT 80 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~--~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT 80 (149) -...||+||.|+||++|+++|++||.+.|+++|++ ++.++||||||+|++++++++ +++|||+||||||||||| T Consensus 11 ~~~~ki~IV~s~~n~~It~~L~~ga~~~l~~~g~~~~i~~~~VPGa~EiP~~~~~l~~----~~~~daiIaLG~VIkGeT 86 (155) T d1c2ya_ 11 AQSFRFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGK----SGKYHAIVCLGAVVKGDT 86 (155) T ss_dssp CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHH----TTCCSEEEEEEECCCCSS T ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCCCEEEEEEEEECCCC T ss_conf 8897899999437699999999999999998399977189994437888999999985----379884999989970786 Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC Q ss_conf 246789999999999999743997056542558899999950656574569999999999999986369 Q gi|254780346|r 81 AHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLSE 149 (149) Q Consensus 81 ~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~~ 149 (149) +|||+||+++++|||++|+++++||+||||||+|++||++|++++.+|||.|||+||++|++|+|++-| T Consensus 87 ~H~e~I~~~v~~gl~~lsl~~~~PV~~GILT~~n~~QA~~R~~~~~~nkG~eaa~aal~m~~l~~~~~k 155 (155) T d1c2ya_ 87 SHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKGAESALTAIEMASLFEHHLK 155 (155) T ss_dssp THHHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHEEETTEEHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 188899999999999997441998796224889889999884664345799999999999999998519 No 2 >d1nqua_ c.16.1.1 (A:) Lumazine synthase {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=0 Score=335.74 Aligned_cols=143 Identities=33% Similarity=0.475 Sum_probs=134.5 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC Q ss_conf 665871799980312899999999999999987995---55553001442269999998633113785356654120006 Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRG 78 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkG 78 (149) +-...||+||.|+||++|+++|++||.+.|.++|+. +++++||||||+|++++++++ +.+|||+||||||||| T Consensus 9 ~~~~~ri~IV~s~~n~~I~~~Ll~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~l~~----~~~~daiIaLG~VIkG 84 (154) T d1nqua_ 9 TAEGLRFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELAR----KEDIDAVIAIGVLIRG 84 (154) T ss_dssp CCTTCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHT----CTTCCEEEEEEEEECC T ss_pred CCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEEECCHHHHHHHHHHHHH----HCCCCEEEEEEEEEEC T ss_conf 689988999994576999999999999999985998456256770877771799999986----0477848988899717 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 6524678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 79 KTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 79 eT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) ||+|||+||+++++||+++|+++++||+|||||++|++||++|++++++|||.|||+||++|++++|+|. T Consensus 85 eT~H~e~I~~~v~~gl~~lsl~~~~Pi~~GILt~~n~~QA~eR~~~~~~nkG~eaA~aal~mi~l~r~lk 154 (154) T d1nqua_ 85 ATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAGTKHGNKGWEAALSAIEMANLFKSLR 154 (154) T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHHC T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 8607779999999999999875399779862278988999987178543509999999999999998649 No 3 >d1c41a_ c.16.1.1 (A:) Lumazine synthase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Probab=100.00 E-value=0 Score=333.23 Aligned_cols=148 Identities=24% Similarity=0.384 Sum_probs=136.1 Q ss_pred CCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHH------------------ Q ss_conf 665871799980312899999999999999987995---55553001442269999998633------------------ Q gi|254780346|r 2 EVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAK------------------ 60 (149) Q Consensus 2 ~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~------------------ 60 (149) |-...||+||.|+||++|++.|++||.+.|++.|+. +++++|||+||||+++++++.+. T Consensus 8 d~s~lrI~IV~s~~n~~I~d~Ll~ga~~~L~~~Gv~~~~i~v~~VPGa~ElP~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 87 (195) T d1c41a_ 8 DGSALRIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQTPSSGPSLSAGDLLG 87 (195) T ss_dssp CCSSCCEEEEEECTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSTTHHHHHHHHHHHHHHHC--------------- T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 87899899997108789999999999999998599835685998885988999999998620111011211111111123 Q ss_pred --------------HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC Q ss_conf --------------113785356654120006652467899999999999997439970565425588999999506565 Q gi|254780346|r 61 --------------TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH 126 (149) Q Consensus 61 --------------~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~ 126 (149) +.+++|||+|||||||||||+||||||+++++|||++|+++++||+|||||++|++||++|++.+. T Consensus 88 ~~~~~~~~~~~~~~a~~~~yDaiIaLG~VIkGeT~Hfe~I~~~v~~gL~~lsl~~~~PIi~GILTv~n~eQA~~Ra~~~~ 167 (195) T d1c41a_ 88 SSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVSHGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIE 167 (195) T ss_dssp ---------------CCSCCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHTTCST T ss_pred CCCCCCCCHHHHHHHHCCCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCC T ss_conf 44321100012455531786679998789845853888999999999999873169856998537799899998727777 Q ss_pred --CCCHHHHHHHHHHHHHHHHHHCC Q ss_conf --74569999999999999986369 Q gi|254780346|r 127 --LDRGGCAARSALAMIELKKSLSE 149 (149) Q Consensus 127 --~nkG~eaa~Aal~mi~l~~~l~~ 149 (149) .|||.|||+||++|+.++|+|.. T Consensus 168 ~~~NKG~EAA~Aal~M~~l~r~l~~ 192 (195) T d1c41a_ 168 GSHNHGEDWGLAAVEMGVRRRDWAA 192 (195) T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 8875689999999999999998743 No 4 >d1rvv1_ c.16.1.1 (1:) Lumazine synthase {Bacillus subtilis [TaxId: 1423]} Probab=100.00 E-value=0 Score=334.02 Aligned_cols=142 Identities=28% Similarity=0.448 Sum_probs=134.5 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCC Q ss_conf 65871799980312899999999999999987995---555530014422699999986331137853566541200066 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGK 79 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGe 79 (149) -...||+||.|+||++|+++|++||.+.|.++|+. +++++||||||+|++++++++ +++|||+|||||||||| T Consensus 10 ~~~~ki~IV~s~~n~~I~~~l~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~~~~~~~~----~~~~daiIalG~VIkGe 85 (154) T d1rvv1_ 10 GTGLKIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAE----TKKYDAIITLGTVIRGA 85 (154) T ss_dssp CTTCCEEEEEESTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEEEECCS T ss_pred CCCCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEHHHHHHHHHC----CCCCCEEEEEEEEECCC T ss_conf 89988999980176999999999999999985998667579997845318799998750----34656278888997178 Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHC Q ss_conf 524678999999999999974399705654255889999995065657456999999999999998636 Q gi|254780346|r 80 TAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 80 T~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~nkG~eaa~Aal~mi~l~~~l~ 148 (149) |+|||+||++|++|||++|+++++||+|||||++|++||++|++++.+|||.|||+||++|++|+|+|. T Consensus 86 T~H~e~I~~~v~~gl~~lsl~~~~PV~~GILt~~n~~QA~~R~~~~~~nKG~eaA~aal~m~~l~r~l~ 154 (154) T d1rvv1_ 86 TTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAGTKAGNKGVDCAVSAIEMANLNRSFE 154 (154) T ss_dssp SSHHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTEEETTEEHHHHHHHHHHHHHHHHHHTC T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC T ss_conf 706778999999999999632798779862588988999998267654509999999999999986429 No 5 >d1ejba_ c.16.1.1 (A:) Lumazine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=100.00 E-value=0 Score=329.30 Aligned_cols=146 Identities=23% Similarity=0.318 Sum_probs=134.6 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE---EEEEHHHHHHHHHHHHHHHHHHHC-CCCCCEEEEEEEEE Q ss_conf 96658717999803128999999999999999879955---555300144226999999863311-37853566541200 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQW---SSIVTPGVLEIPAAVSMVMNAKTR-SVTYDGIIVLGVVM 76 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~---~~i~VPGa~EiP~a~~~~~~~~~~-~~~~D~vIaLG~VI 76 (149) +|....||+||.|+||++|+++|++||.+.|+++|++. ++++||||||||+++++++++... +.+|||+|+||||| T Consensus 12 ~d~~~~rI~IV~s~~n~~I~~~Ll~ga~~~L~~~gi~~~~i~~~~VPGa~EiP~~~~~l~~~~~~~~~~~D~iI~LG~VI 91 (168) T d1ejba_ 12 YDGSKIRVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLI 91 (168) T ss_dssp CCCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEE T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEE T ss_conf 68768989999710878999999999999999869986674699638716889999999987674068766698876676 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHH Q ss_conf 06652467899999999999997439970565425588999999506565----74569999999999999986 Q gi|254780346|r 77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH----LDRGGCAARSALAMIELKKS 146 (149) Q Consensus 77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~----~nkG~eaa~Aal~mi~l~~~ 146 (149) ||||+||||||++|++|||++|+++++||+|||||++|++||++|++++. .|||.|||+||++|+.++++ T Consensus 92 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GVLT~~n~~QA~~R~~~~~~~~~~nKG~EaA~aaleM~~~~~k 165 (168) T d1ejba_ 92 KGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARAGIDEAHSMHNHGEDWGAAAVEMAVKFGK 165 (168) T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHBTCSTTCCSCBHHHHHHHHHHHHHHHHST T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 16753778999999999999987539977989714799999998728654555567589999999999998645 No 6 >d1di0a_ c.16.1.1 (A:) Lumazine synthase {Brucella abortus [TaxId: 235]} Probab=100.00 E-value=0 Score=328.07 Aligned_cols=140 Identities=19% Similarity=0.273 Sum_probs=131.0 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 871799980312899999999999999987995---55553001442269999998633113785356654120006652 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) +.||+||.|+||++|+|+|++||.+.|.+.++. +++++||||||||++++++++ +++|||+|+|||||||||+ T Consensus 2 s~rI~IV~s~~n~~i~~~ll~~a~~~l~~~g~~~~~i~~~~VPGa~EiP~aa~~l~~----~~~~daiI~lG~VIkGeT~ 77 (148) T d1di0a_ 2 SFKIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLAR----TGRYAAIVGAAFVIDGGIY 77 (148) T ss_dssp CEEEEEEEECTTHHHHHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHH----TSCCSEEEEEEECCCCSSB T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHH----HCCCCEEEEEEEEECCCCH T ss_conf 988999980287999999999999999985999300699973875662899999875----1466769999887638864 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCCC---CCHHHHHHHHHHHHHHHHHHC Q ss_conf 4678999999999999974399705654255889999995065657---456999999999999998636 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHL---DRGGCAARSALAMIELKKSLS 148 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~~---nkG~eaa~Aal~mi~l~~~l~ 148 (149) ||||||++|++|||++++++++||+||||||+|++||++|++++.+ |||.|||+||++|++++++|+ T Consensus 78 H~e~I~~~v~~gl~~v~l~~~~Pv~~gVLt~~n~~QA~~R~~~~~~~~~nKG~EaA~aal~mi~~~~~l~ 147 (148) T d1di0a_ 78 DHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDFFHAHFKVKGVEAAHAALQIVSERSRIA 147 (148) T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCEEEEEECBSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHC T ss_conf 8889999999999999876199679996067989999987364424540219999999999999998716 No 7 >d1kz1a_ c.16.1.1 (A:) Lumazine synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Probab=100.00 E-value=0 Score=316.67 Aligned_cols=137 Identities=26% Similarity=0.403 Sum_probs=125.5 Q ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHH-CCCC---EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 966587179998031289999999999999998-7995---555530014422699999986331137853566541200 Q gi|254780346|r 1 MEVFIPHVLIIEARFYENLSAMLFEGCVNVLHS-RAVQ---WSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 1 m~~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~-~~~~---~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) |+-...||+||.|+||++|+++|++||.+.|.+ .++. +++++|||+||||++++++++ +++|||+|+||||| T Consensus 5 l~~~~~rI~IV~s~~n~~i~~~L~~ga~~~l~~~~~~~~~~i~v~~VPGa~EiP~~~~~~~~----~~~~D~iIalG~VI 80 (150) T d1kz1a_ 5 LKGPELRILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIA----RNTYDAVIGIGVLI 80 (150) T ss_dssp CCCTTCCEEEEECCTTHHHHHHHHHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHH----HSCCSEEEEEEEEE T ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHH----CCCCCEEEEEEEEE T ss_conf 78889889999741878999999999999999856998434279995777778999999873----24656178887776 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCCC-CCCHHHHHHHHHHHH Q ss_conf 06652467899999999999997439970565425588999999506565-745699999999999 Q gi|254780346|r 77 RGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH-LDRGGCAARSALAMI 141 (149) Q Consensus 77 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~~-~nkG~eaa~Aal~mi 141 (149) ||||+|||+||++|++|||++|+++++||+||||||+|++||++|++.+. .|||.|||+||++|. T Consensus 81 kGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~GILt~~n~~QA~~R~~~~~~~nkG~eaa~aal~ma 146 (150) T d1kz1a_ 81 KGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRAGLNGGHNHGNDWGSAAVEMG 146 (150) T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESSHHHHHHHBTCTTCCBHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHH T ss_conf 376258789999999999998553896379997887999999998278677766899999999999 No 8 >d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]} Probab=91.86 E-value=0.42 Score=25.07 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=44.7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 717999803128999999999999999879955555300144226-999999863311378535665412 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) |.|++|.+.+....-..++.|..+.+.++|+....+...+..|-- ..++.+. ...+||+|.++. T Consensus 1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~~~d~~~~~~~~~~l~-----~~~vdgiIi~~~ 65 (282) T d1dbqa_ 1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMA-----QKRVDGLLVMCS 65 (282) T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHH-----HTTCSEEEEECS T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHH-----HCCCCEEEEECC T ss_conf 98999957797789999999999999986999999968999899999999999-----669987863112 No 9 >d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]} Probab=88.32 E-value=0.83 Score=23.24 Aligned_cols=99 Identities=11% Similarity=0.159 Sum_probs=45.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHH Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541200066524678 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDV 85 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~ 85 (149) .||++|.+..+......-++|+.+.+++++....... .+-+..+...+...+......++|++++.+ +. T Consensus 119 ~~i~~i~~~~~~~~~~~R~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ai~~~~----------~~ 187 (271) T d1jyea_ 119 QQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAER-EGDWSAMSGFQQTMQMLNEGIVPTAMLVAN----------DQ 187 (271) T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHHHHHTTCCCSEEE-ECCSSHHHHHHHHHHHHHTTCCCSEEEESS----------HH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEE-CCCCCCCCCCCHHHHHHHCCCCCCHHHCCC----------HH T ss_conf 5433222344551577656788777664135421000-011111124420223331245652111232----------04 Q ss_pred HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHH Q ss_conf 99999999999997439970565425588999 Q gi|254780346|r 86 IAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQ 117 (149) Q Consensus 86 I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~Q 117 (149) ++..+.+.+.+..+ .+|=-..|++.++... T Consensus 188 ~a~~~~~~l~~~g~--~vp~di~Ii~~d~~~~ 217 (271) T d1jyea_ 188 MALGAMRAITESGL--RVGADISVVGYDDTED 217 (271) T ss_dssp HHHHHHHHHHHTTC--CBTTTBEEECSBCCGG T ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEEECCHH T ss_conf 44578786787505--6885578876524577 No 10 >d1d4aa_ c.23.5.3 (A:) NAD(P)H:quinone reductase {Human (Homo sapiens) [TaxId: 9606]} Probab=87.75 E-value=0.46 Score=24.84 Aligned_cols=40 Identities=13% Similarity=0.033 Sum_probs=33.0 Q ss_pred CCCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 587179998031289-9999999999999987995555530 Q gi|254780346|r 4 FIPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 4 ~~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) |+|||+||.+.=+++ .+..|.+.+.+.|.+.|.+++.++. T Consensus 1 m~KKiLiI~ahP~~~S~~~aL~~~~~~~l~~~G~eV~~~DL 41 (273) T d1d4aa_ 1 VGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDL 41 (273) T ss_dssp CCCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 98769999718998667999999999999878798999988 No 11 >d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]} Probab=82.97 E-value=1.5 Score=21.61 Aligned_cols=66 Identities=9% Similarity=0.143 Sum_probs=42.3 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .++++|..+.+.+.-..+.+|+.+.++++|+++..+..++-.....-.+.+-+ ..+.++||+|..+ T Consensus 2 ~~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~d~~~q~~~i~~--~i~~~~DgIi~~~ 67 (288) T d1guda_ 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFED--LSNKNYKGIAFAP 67 (288) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHH--HHTSSEEEEEECC T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHH--HHHCCCCEEEEEC T ss_conf 57999969898889999999999999973997999965898999999999999--9966999899724 No 12 >d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]} Probab=82.02 E-value=1.6 Score=21.52 Aligned_cols=63 Identities=11% Similarity=0.215 Sum_probs=39.9 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEE-EHHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 8717999803128999999999999999879955555-3001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI-VTPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i-~VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||.++.-.. ..+++..++.|++.|+++.++ .|++ .+|- +....+. .+..++|.||++| T Consensus 30 ~k~~Livt~~~~~~--~g~~~~v~~~L~~~gi~~~vf~~v~~~p~~~~---v~~~~~~-~~~~~~D~IiaiG 95 (385) T d1rrma_ 30 YQKALIVTDKTLVQ--CGVVAKVTDKMDAAGLAWAIYDGVVPNPTITV---VKEGLGV-FQNSGADYLIAIG 95 (385) T ss_dssp CCEEEEECBHHHHH--TTHHHHHHHHHHHTTCEEEEECBCCSSCBHHH---HHHHHHH-HHHHTCSEEEEEE T ss_pred CCEEEEEECCCHHH--CCHHHHHHHHHHHCCCEEEEECCCCCCCCHHH---HHHHHHH-HHCCCCCEEEECC T ss_conf 99799998965565--80899999999875985999868269979899---9988654-3035888898669 No 13 >d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]} Probab=79.19 E-value=2.1 Score=20.80 Aligned_cols=68 Identities=13% Similarity=0.018 Sum_probs=44.8 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHH-HHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 58717999803128999999999999999879955555300144226-99999986331137853566541200 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP-~a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) +.+-|++|.+......-..++.|+.+.+.+.|++...+...+.-|.- -.+..+ ...++||+|..++.- T Consensus 2 kt~tIgvvvp~l~~~f~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~e~~~i~~~-----~~~~vdgii~~~~~~ 70 (275) T d2nzug1 2 KTTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNSDQNQDKELHLLNNM-----LGKQVDGIIFMSGNV 70 (275) T ss_dssp CCSEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHH-----HTTCCSEEEECCSCC T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHH-----HHCCCCEEECCCCCH T ss_conf 388999997888798999999999999998699899997899979999999999-----840875032045200 No 14 >d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]} Probab=78.65 E-value=2.1 Score=20.70 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=43.9 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEE Q ss_conf 58717999803128999999999999999879955555300144226999999863311378535665412 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGV 74 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~ 74 (149) ..+||++|........-..+..|+.+.++++|+++..+ .|+-.....-.+.+-+ ....++||+|.... T Consensus 2 ~~~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~-~~~~~d~~~q~~~i~~--~i~~~~dgIIi~~~ 69 (316) T d1tjya_ 2 SAERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD-GPTEPSVSGQVQLVNN--FVNQGYDAIIVSAV 69 (316) T ss_dssp CCCEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC-CCSSCCHHHHHHHHHH--HHHTTCSEEEECCS T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE-ECCCCCHHHHHHHHHH--HHHCCCCEEEECCC T ss_conf 78899999389999899999999999999819979999-7999999999999999--99659986641144 No 15 >d1p80a1 c.23.16.3 (A:598-753) Catalase, C-terminal domain {Escherichia coli, HPII [TaxId: 562]} Probab=76.52 E-value=0.44 Score=24.94 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=58.5 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC Q ss_conf 6587179998031289999999999999998799555553-----00144226999999863311378535665412000 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149) +..+||+|+.+.-.+ +.-+.+-.+.|.+.|+.+..+. |.|..-.+.....-+. ...+..||+++.-| T Consensus 1 i~grkVaiLv~dg~~---~~e~~~~~~~l~~ag~~v~~v~~~~~~v~~~~G~~i~~d~t~~-~~~~~~yDaliiPG---- 72 (156) T d1p80a1 1 VKGRVVAILLNDEVR---SADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFA-GAPSLTVDAVIVPC---- 72 (156) T ss_dssp CTTCEEEEECCTTCC---HHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETT-TSCGGGCSEEEECC---- T ss_pred CCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEEEEEC-CCCCCCCCEEEEEC---- T ss_conf 997689999679988---8999999999997899899975244544432203786545504-57722177899608---- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 665246789999999999999743997056 Q gi|254780346|r 78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) |. .-++-.+.-...+.+=+.++++||+. T Consensus 73 G~--~~~l~~~~~~~~~i~e~~~~~K~I~a 100 (156) T d1p80a1 73 GN--IADIADNGDANYYLMEAYKHLKPIAL 100 (156) T ss_dssp SC--THHHHTCHHHHHHHHHHHHTTCCEEE T ss_pred CC--HHHHHCCHHHHHHHHHHHHCCCEEEE T ss_conf 75--67775415899999999986996999 No 16 >d2a5la1 c.23.5.8 (A:3-198) Trp repressor binding protein WrbA {Pseudomonas aeruginosa [TaxId: 287]} Probab=76.10 E-value=2.1 Score=20.81 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=32.8 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHH Q ss_conf 87179998031289999999999999998799555553001 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPG 45 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPG 45 (149) +|||+||..+.|- -|..|.+.+.+.+.+.|++.+.+.+.. T Consensus 1 ~~Kvliiy~S~~G-nT~~la~~i~~g~~~~g~e~~~~~~~~ 40 (196) T d2a5la1 1 SPYILVLYYSRHG-ATAEMARQIARGVEQGGFEARVRTVPA 40 (196) T ss_dssp CCEEEEEECCSSS-HHHHHHHHHHHHHHHTTCEEEEEBCCC T ss_pred CCEEEEEEECCCC-HHHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 9869999938980-899999999999863697799985355 No 17 >d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]} Probab=74.69 E-value=2.8 Score=20.02 Aligned_cols=32 Identities=3% Similarity=-0.180 Sum_probs=18.3 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCE Q ss_conf 17999803128999999999999999879955 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQW 38 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~ 38 (149) ||++|........-..+++|+.+..++.|++. T Consensus 3 kIg~v~~~~~~p~~~~~~~g~~~aa~~~G~~~ 34 (305) T d8abpa_ 3 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 34 (305) T ss_dssp EEEEEESCTTSHHHHHHHHHHHHHHHHHTEEE T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHCCCEE T ss_conf 99999699888899999999999999739989 No 18 >d1qvwa_ c.23.16.2 (A:) Hypothetical protein Ydr533Cp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=74.55 E-value=2.3 Score=20.48 Aligned_cols=99 Identities=9% Similarity=0.035 Sum_probs=57.8 Q ss_pred CCEEEEEEECHHHHH-HH--------HHHHHHHHHHHHCCCCEEEEEHHH-------H-----HHHHHHHHH-------- Q ss_conf 871799980312899-99--------999999999998799555553001-------4-----422699999-------- Q gi|254780346|r 5 IPHVLIIEARFYENL-SA--------MLFEGCVNVLHSRAVQWSSIVTPG-------V-----LEIPAAVSM-------- 55 (149) Q Consensus 5 ~~kI~IV~s~~~~~i-~~--------~ll~ga~~~l~~~~~~~~~i~VPG-------a-----~EiP~a~~~-------- 55 (149) -|||+||.|++++.. .+ .=+-.....|.+.|++++...--| + ++-+....+ T Consensus 2 pKkvLiv~t~~~~~~~~~g~~TG~~~~E~~~P~~~l~~aG~~V~iASp~G~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 81 (236) T d1qvwa_ 2 PKKVLLALTSYNDVFYSDGMKTGVFVVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 81 (236) T ss_dssp CCEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH T ss_pred CCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 96499997577534688887473369999999999997798599988999888886543201146277788765008888 Q ss_pred -HHHH-H----HCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf -9863-3----11378535665412000665246789999999999999743997056 Q gi|254780346|r 56 -VMNA-K----TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 56 -~~~~-~----~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) .++. . ....+||+++.-|-- -.=+++-.+.....|.+-..+.+.||+- T Consensus 82 ~~l~~~~~~~~v~~~~ydav~ipGG~----g~~~dl~~~~~l~~li~~~~~~gk~vaA 135 (236) T d1qvwa_ 82 KTLAKIKTPKEVNADDYQIFMASAGH----GTLFDYPKAKDLQDIASEIYANGGVVAA 135 (236) T ss_dssp HHHHTCBCGGGCCGGGCSEEEECCST----THHHHGGGCHHHHHHHHHHHHTTCEEEE T ss_pred HHHHCCCCHHHCCHHHCCEEEEECCC----CCHHCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 87743467656898579899980776----4400005666789999999866985898 No 19 >d1u9ca_ c.23.16.2 (A:) GK2698 ortholog {Bacillus stearothermophilus [TaxId: 1422]} Probab=74.19 E-value=2.8 Score=19.95 Aligned_cols=99 Identities=12% Similarity=0.098 Sum_probs=55.4 Q ss_pred CCCEEEEEEECHHHHHHHH--------HHHHHHHHHHHCCCCEEEEEHHH--------HHHH----HHHHHHHHHH---- Q ss_conf 5871799980312899999--------99999999998799555553001--------4422----6999999863---- Q gi|254780346|r 4 FIPHVLIIEARFYENLSAM--------LFEGCVNVLHSRAVQWSSIVTPG--------VLEI----PAAVSMVMNA---- 59 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~--------ll~ga~~~l~~~~~~~~~i~VPG--------a~Ei----P~a~~~~~~~---- 59 (149) |.+||+||.|++.. +.+. =+-...+.|.+.|++++.....| .++- -......++. T Consensus 1 M~KkvLiv~s~~~~-~~~~~~tG~~~~E~~~P~~~l~~aG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~l~~~~~l 79 (221) T d1u9ca_ 1 MSKRVLMVVTNHTT-ITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARL 79 (221) T ss_dssp CCCEEEEEECCCCE-EETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEEC T ss_pred CCCEEEEEECCCHH-CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHCCCCH T ss_conf 99669999668012-16887553039999999999998899799996489852013675520000257777786077885 Q ss_pred -HHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf -311378535665412000665246789999999999999743997056 Q gi|254780346|r 60 -KTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 60 -~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) .....+||+++.-|-- -.-+++-.+.....+.+-..+.+.||+- T Consensus 80 ~~v~~~dYd~v~iPGG~----g~~~~l~~~~~l~~li~~~~~~~k~iaA 124 (221) T d1u9ca_ 80 SKDDAHGFDAIFLPGGH----GTMFDFPDNETLQYVLQQFAEDGRIIAA 124 (221) T ss_dssp CGGGGSSCSEEEECCCT----THHHHSTTCHHHHHHHHHHHHTTCEEEE T ss_pred HHCCHHHCCEEEECCCC----CHHHCCHHHHHHHHHHHHHHHCCCCCEE T ss_conf 67898678889927987----2665240268999999998753582124 No 20 >d1p5fa_ c.23.16.2 (A:) DJ-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=72.93 E-value=1.7 Score=21.36 Aligned_cols=95 Identities=14% Similarity=0.141 Sum_probs=51.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEH------HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECC Q ss_conf 871799980312899999999999999987995555530------01442269999998633113785356654120006 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT------PGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRG 78 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~V------PGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkG 78 (149) +|||+|+...-.+++- +-...+.|.+.|++++.+.. .++.-++......+.......+||+++.-| | T Consensus 1 sKkvlvll~~Gfe~~E---~~~p~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~d~~~~~~~D~liipG----G 73 (186) T d1p5fa_ 1 SKRALVILAKGAEEME---TVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPG----G 73 (186) T ss_dssp CCEEEEEECTTCCHHH---HHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHHTCCCSEEEECC----C T ss_pred CCEEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEEECCCCCEECCCCCCCCCCCCHHCCCCCCCCCEEEEEC----C T ss_conf 9689999289978999---99999999978898999982699536658996046750021167754646899816----7 Q ss_pred CCCHHH-HHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 652467-89999999999999743997056 Q gi|254780346|r 79 KTAHCD-VIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 79 eT~H~e-~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) . ...+ +--+.-...+.+-..+.+.||+- T Consensus 74 ~-~~~~~l~~~~~l~~~lr~~~~~~k~i~a 102 (186) T d1p5fa_ 74 N-LGAQNLSESAAVKEILKEQENRKGLIAA 102 (186) T ss_dssp H-HHHHHHHHCHHHHHHHHHHHHTTCEEEE T ss_pred C-CCCCCCCCHHHHHHHHHHHHCCCCCEEE T ss_conf 5-5301001249999999875304651330 No 21 >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} Probab=71.00 E-value=3.4 Score=19.49 Aligned_cols=67 Identities=4% Similarity=0.018 Sum_probs=42.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH--HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 8717999803128999999999999999879955555300--14422699999986331137853566541200066524 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP--GVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP--Ga~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) +.|++||+.+-| .-|+.+.+...+.+.+.|++++.+.+. ..-|+. ..+ .+||+++ +|+=.-+...+ T Consensus 2 k~K~lIvY~S~~-GnT~~vA~~Ia~~l~~~g~~v~~~~~~~~~~~~~~---~~~-------~~~d~ii-~Gspt~~g~~~ 69 (149) T d1ycga1 2 KAKAVIAYDTMW-LSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVI---KEI-------LDARAVL-VGSPTINNDIL 69 (149) T ss_dssp CSEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHH---HHH-------HHCSEEE-EECCCBTTBCC T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHH---HHH-------HHCCEEE-EEEECCCCCCC T ss_conf 967999999998-08999999999998756982699971435568775---436-------4178499-99603467779 Q ss_pred H Q ss_conf 6 Q gi|254780346|r 83 C 83 (149) Q Consensus 83 ~ 83 (149) - T Consensus 70 ~ 70 (149) T d1ycga1 70 P 70 (149) T ss_dssp G T ss_pred H T ss_conf 8 No 22 >d1ydga_ c.23.5.8 (A:) Trp repressor binding protein WrbA {Deinococcus radiodurans [TaxId: 1299]} Probab=68.62 E-value=3.8 Score=19.17 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=31.5 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH Q ss_conf 717999803128999999999999999879955555300 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP 44 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP 44 (149) -||+||..+.+ .-|..|.+-+.+.+.+.|++.+.+.++ T Consensus 3 mkilivy~S~~-GnT~~la~~ia~g~~~~G~ev~~~~~~ 40 (201) T d1ydga_ 3 VKLAIVFYSST-GTGYAMAQEAAEAGRAAGAEVRLLKVR 40 (201) T ss_dssp CEEEEEECCSS-SHHHHHHHHHHHHHHHTTCEEEEEECC T ss_pred CEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 57999996898-389999999999998659779999855 No 23 >d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]} Probab=65.55 E-value=4.4 Score=18.79 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=31.0 Q ss_pred CEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 7179998031289-9999999999999987995555530 Q gi|254780346|r 6 PHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 6 ~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) .||+||.+.-+++ .+..|++.+.+.+++.|.+++.+.. T Consensus 3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL 41 (230) T d2qwxa1 3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDL 41 (230) T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEET T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 879999827998568999999999999967997999986 No 24 >d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Probab=65.23 E-value=4.4 Score=18.76 Aligned_cols=63 Identities=17% Similarity=0.179 Sum_probs=32.0 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 71799980312899999999999999987995555530014422699999986331137853566541 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) +|++||..+.-.+.. .+...+.|.+.++.+....++|---.+ .++.+.+. .+..+.|.+|++| T Consensus 31 ~r~lvvtd~~~~~~~---~~~l~~~L~~~~i~~~~~~~~~~p~~~-~v~~~~~~-~~~~~~D~IiavG 93 (366) T d1jq5a_ 31 NKTVVIADEIVWKIA---GHTIVNELKKGNIAAEEVVFSGEASRN-EVERIANI-ARKAEAAIVIGVG 93 (366) T ss_dssp SEEEEEECHHHHHHT---HHHHHHHHHTTTCEEEEEECCSSCBHH-HHHHHHHH-HHHTTCSEEEEEE T ss_pred CEEEEEECCCHHHHH---HHHHHHHHHHCCCEEEEEEECCCCCHH-HHHHHHHH-HHCCCCCEEEEEC T ss_conf 948999898578999---999999998779969999818999999-99999998-6203886899816 No 25 >d2arka1 c.23.5.8 (A:1-184) Flavodoxin FldA {Aquifex aeolicus [TaxId: 63363]} Probab=64.70 E-value=4.4 Score=18.74 Aligned_cols=39 Identities=15% Similarity=0.037 Sum_probs=25.5 Q ss_pred CCEEEEEE-ECHHHHHHHHHHHHHHHHHHH-CCCCEEEEEHHH Q ss_conf 87179998-031289999999999999998-799555553001 Q gi|254780346|r 5 IPHVLIIE-ARFYENLSAMLFEGCVNVLHS-RAVQWSSIVTPG 45 (149) Q Consensus 5 ~~kI~IV~-s~~~~~i~~~ll~ga~~~l~~-~~~~~~~i~VPG 45 (149) |+||+||+ |.+.. |+.|-+...+.+.+ .|++.+.+.++. T Consensus 1 M~kilivy~S~~G~--T~~~A~~ia~g~~~~~g~~v~~~~~~~ 41 (184) T d2arka1 1 MGKVLVIYDTRTGN--TKKMAELVAEGARSLEGTEVRLKHVDE 41 (184) T ss_dssp CEEEEEEECCSSSH--HHHHHHHHHHHHHTSTTEEEEEEETTT T ss_pred CCEEEEEEECCCCH--HHHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 98699999899838--999999999855334695699940234 No 26 >d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]} Probab=63.89 E-value=4.7 Score=18.60 Aligned_cols=102 Identities=15% Similarity=0.137 Sum_probs=57.0 Q ss_pred CCCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 587179998031-2899999999999999987995555530014422699999986331137853566541200066524 Q gi|254780346|r 4 FIPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 4 ~~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) |.+|+.+|.=.. -..-....+....+.|.+++.+++.+.+.+.-+.--.++.. ....||.+|+.| ||-. T Consensus 1 ~~kr~~vi~NP~SG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~d~ivv~G----GDGT- 70 (312) T d2qv7a1 1 MRKRARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATEKIGDATLEAERA-----MHENYDVLIAAG----GDGT- 70 (312) T ss_dssp CCEEEEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHH-----TTTTCSEEEEEE----CHHH- T ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH-----HHCCCCEEEEEC----CCCH- T ss_conf 981699998768899757999999999999779928999828922799999988-----776998899986----7847- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC Q ss_conf 678999999999999974399705654255889999995065 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~ 124 (149) -+++.+++++ .+..+-.|||-..+.. .+.|+-+ T Consensus 71 ----v~~v~~~l~~----~~~~~~l~iiP~GTgN-~~ar~l~ 103 (312) T d2qv7a1 71 ----LNEVVNGIAE----KPNRPKLGVIPMGTVN-DFGRALH 103 (312) T ss_dssp ----HHHHHHHHTT----CSSCCEEEEEECSSCC-HHHHHTT T ss_pred ----HHHHHHHHHH----HCCCCCEEEEECCCCC-CCHHHCC T ss_conf ----9999999975----3556636875368887-5044224 No 27 >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} Probab=61.92 E-value=5.1 Score=18.38 Aligned_cols=38 Identities=5% Similarity=0.020 Sum_probs=30.5 Q ss_pred CCEEEEEE-ECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH Q ss_conf 87179998-03128999999999999999879955555300 Q gi|254780346|r 5 IPHVLIIE-ARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP 44 (149) Q Consensus 5 ~~kI~IV~-s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP 44 (149) ++||+||+ |.|-. |+.|.+...+.|.+.+++++.+.+. T Consensus 2 ~~Ki~IiY~S~tGn--Te~~A~~Ia~~l~~~g~ev~~~~~~ 40 (152) T d1e5da1 2 TNKVVIFYDSMWHS--TEKMARVLAESFRDEGCTVKLMWCK 40 (152) T ss_dssp CSEEEEEECCSSSH--HHHHHHHHHHHHHHTTCEEEEEETT T ss_pred CCEEEEEEECCCCH--HHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 98699999998808--9999999999986579779983066 No 28 >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Probab=60.07 E-value=3.7 Score=19.25 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=60.1 Q ss_pred HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH-------HHHHHHHHHHHHH Q ss_conf 999999879955555--3001442269999998633113785356654120006652467-------8999999999999 Q gi|254780346|r 27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD-------VIAHAVTRGLVDL 97 (149) Q Consensus 27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e-------~I~~~v~~gl~~l 97 (149) ..+.|.+.|+..-.+ +.|+++|.- +.+.+ ...|..+-.|.|..-|+-+.= .||-.....+.+. T Consensus 31 ~~~al~~~Gi~~iEitl~~~~a~~~I---~~l~~-----~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~ 102 (212) T d1vhca_ 31 LADTLAKNGLSVAEITFRSEAAADAI---RLLRA-----NRPDFLIAAGTVLTAEQVVLAKSSGADFVVTPGLNPKIVKL 102 (212) T ss_dssp HHHHHHHTTCCEEEEETTSTTHHHHH---HHHHH-----HCTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----CCCCCEEEEEECCCHHHHHHHHHHCCCEEECCCCCHHHHHH T ss_conf 99999987998899957881589999---99986-----28873476631465899999986178689778887999999 Q ss_pred HHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 974399705654255889999995 Q gi|254780346|r 98 SINGSLPIGNGIVVVDSEQQAFDR 121 (149) Q Consensus 98 sl~~~~PI~~gILt~~n~~QA~~R 121 (149) +.++++|.+=|+.|+....+|++. T Consensus 103 a~~~~i~~iPGv~TpsEi~~A~~~ 126 (212) T d1vhca_ 103 CQDLNFPITPGVNNPMAIEIALEM 126 (212) T ss_dssp HHHTTCCEECEECSHHHHHHHHHT T ss_pred HHHCCCCCCCCCCCHHHHHHHHHC T ss_conf 985599716886888999999987 No 29 >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} Probab=58.20 E-value=4.3 Score=18.84 Aligned_cols=85 Identities=9% Similarity=0.172 Sum_probs=59.7 Q ss_pred HHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHH---------HHHHHHH Q ss_conf 999999879955555--30014422699999986331137853566541200066524678999---------9999999 Q gi|254780346|r 27 CVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAH---------AVTRGLV 95 (149) Q Consensus 27 a~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~---------~v~~gl~ 95 (149) ..+.|.+.|+..-.| +.|+++|.- +.+.+ ...|..|-.|.|..-+. .+-..+ .....+. T Consensus 34 ~~~al~~~Gi~~iEitl~~p~a~~~i---~~l~~-----~~p~~~vGaGTV~~~~~--~~~a~~aGa~FivsP~~~~~v~ 103 (216) T d1mxsa_ 34 LADALAAGGIRTLEVTLRSQHGLKAI---QVLRE-----QRPELCVGAGTVLDRSM--FAAVEAAGAQFVVTPGITEDIL 103 (216) T ss_dssp HHHHHHHTTCCEEEEESSSTHHHHHH---HHHHH-----HCTTSEEEEECCCSHHH--HHHHHHHTCSSEECSSCCHHHH T ss_pred HHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----HCCCCCEEEEEEECHHH--HHHHHHCCCCEEECCCCCHHHH T ss_conf 99999987998899967980699999---99998-----48975231100120888--9999867998997899849999 Q ss_pred HHHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 99974399705654255889999995 Q gi|254780346|r 96 DLSINGSLPIGNGIVVVDSEQQAFDR 121 (149) Q Consensus 96 ~lsl~~~~PI~~gILt~~n~~QA~~R 121 (149) +.+.+.++|.+=|++|+....+|++. T Consensus 104 ~~a~~~~i~~iPGv~TpsEi~~A~~~ 129 (216) T d1mxsa_ 104 EAGVDSEIPLLPGISTPSEIMMGYAL 129 (216) T ss_dssp HHHHHCSSCEECEECSHHHHHHHHTT T ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHC T ss_conf 99986599864884988999999987 No 30 >d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]} Probab=52.48 E-value=7.3 Score=17.40 Aligned_cols=116 Identities=11% Similarity=0.114 Sum_probs=56.2 Q ss_pred CEEEEEEECHHH-HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 717999803128-9999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 6 PHVLIIEARFYE-NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 6 ~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .||+++....+. ...+...+|..+.+++++........ .+...-+.+.+.+ ....++||++|. .| T Consensus 116 ~~i~~i~~~~~~~~~~~~r~~g~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~--~l~~~~~aii~~----------~d 181 (255) T d1byka_ 116 RNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALP--GLAMKQGYENVAK--VITPETTALLCA----------TD 181 (255) T ss_dssp CCEEEECCCTTSTTTTHHHHHHHHHHHHHTTCCCEEECC--CSCHHHHHHHSGG--GCCTTCCEEEES----------SH T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC--CCCHHHHHHHHHH--HHCCCCCEEECC----------CH T ss_conf 543235777445507777766799999973998620137--7877888899999--707765443034----------43 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHH Q ss_conf 8999999999999974399705654255889999995065-------65745699999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMI 141 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi 141 (149) .++-.+.+.+.+..+ +.| .|++.++.+.+ +.+.+ ....-|+.+++.+++.+ T Consensus 182 ~~A~g~~~~l~~~g~--~d~---~ii~~d~~~~~-~~~~p~ltti~~~~~~~g~~a~~~L~~~i 239 (255) T d1byka_ 182 TLALGASKYLQEQRI--DTL---QLASVGNTPLM-KFLHPEIVTVDPGYAEAGRQAACQLIAQV 239 (255) T ss_dssp HHHHHHHHHHHHTTC--CSC---EEEEECCCHHH-HHHCTTSEEEBCCHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHCC--CCC---CEEEECCHHHH-HHCCCCCEEEEECHHHHHHHHHHHHHHHH T ss_conf 657569999998486--644---41344874899-83489956998599999999999999997 No 31 >d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]} Probab=50.70 E-value=7.8 Score=17.23 Aligned_cols=62 Identities=15% Similarity=0.342 Sum_probs=35.3 Q ss_pred CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 8717999803--1289999999999999998799555553-001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||.++ |.. ....+...+.|.+.++++..+. +.+ .+|--. ...+. .+..++|.+|++| T Consensus 34 ~~rvliVt~~~~~~~---~g~~~~l~~~L~~~gi~~~~f~~v~~~pt~~~v~---~~~~~-~~~~~~D~IIavG 100 (398) T d1vlja_ 34 IRKVLFLYGGGSIKK---NGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVH---EAVEV-AKKEKVEAVLGVG 100 (398) T ss_dssp CCEEEEEECSSHHHH---SSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHH---HHHHH-HHHTTCSEEEEEE T ss_pred CCEEEEEECCCHHHH---HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHH---HHHHH-CCCCCCCEEEECC T ss_conf 984899989747877---3199999999986599199986715998989999---87641-1456676688448 No 32 >d1sy7a1 c.23.16.3 (A:553-736) Catalase, C-terminal domain {Neurospora crassa [TaxId: 5141]} Probab=49.58 E-value=4.2 Score=18.89 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=53.0 Q ss_pred CCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEC Q ss_conf 6587179998031289999999999999998799555553-----00144226999999863311378535665412000 Q gi|254780346|r 3 VFIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149) Q Consensus 3 ~~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149) +..+||+|+.+.=.+ ..-+.+..+.|.+.|++++.+. |.++.-.+......+. .....+||+++..|.. T Consensus 1 i~~rkI~ilv~dG~~---~~e~~~~~~~l~~ag~~v~ivs~~~~~v~~~~g~~v~~d~~~~-~~~~~~~dalivpgg~-- 74 (184) T d1sy7a1 1 IKSRRVAIIIADGYD---NVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLE-GFRSTMVDAIFIPGGA-- 74 (184) T ss_dssp CTTCEEEEECCTTBC---HHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETT-TCCGGGSSEEEECCCH-- T ss_pred CCCCEEEEEECCCCC---HHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCEEEEEEECC-- T ss_conf 996589999559975---9999999999997899899998117733432333345432112-3445564079996113-- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 665246789999999999999743997056 Q gi|254780346|r 78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) ......-.+.....+.+-..++++||+- T Consensus 75 --~~~~~~~~~~~~~~~l~~~~~~~k~i~a 102 (184) T d1sy7a1 75 --KAAETLSKNGRALHWIREAFGHLKAIGA 102 (184) T ss_dssp --HHHHHHHTCHHHHHHHHHHHHTTCEEEE T ss_pred --CCCCCCCCCCCHHHHHHHHHHCCCCEEE T ss_conf --5321112221004899999851893687 No 33 >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Probab=48.04 E-value=4.3 Score=18.83 Aligned_cols=88 Identities=17% Similarity=0.214 Sum_probs=60.8 Q ss_pred HHHHHHHHCCCCEEEE--EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH-------HHHHHHHHHHHH Q ss_conf 9999999879955555--3001442269999998633113785356654120006652467-------899999999999 Q gi|254780346|r 26 GCVNVLHSRAVQWSSI--VTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD-------VIAHAVTRGLVD 96 (149) Q Consensus 26 ga~~~l~~~~~~~~~i--~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e-------~I~~~v~~gl~~ 96 (149) ...+.|.+.|+..-.| +.|+++|.- +.+.+ .-.|..+-.|.|..-|+-+-= .||-.....+.+ T Consensus 31 ~~~~al~~~Gi~~iEitl~tp~a~~~I---~~l~~-----~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~ 102 (213) T d1wbha1 31 PMAKALVAGGVRVLNVTLRTECAVDAI---RAIAK-----EVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK 102 (213) T ss_dssp HHHHHHHHTTCCEEEEESCSTTHHHHH---HHHHH-----HCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCHHHHHHH---HHHHH-----HCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCCCHHHHH T ss_conf 999999987998899937982599999---99999-----7898715223046389999999779929978989889999 Q ss_pred HHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 9974399705654255889999995 Q gi|254780346|r 97 LSINGSLPIGNGIVVVDSEQQAFDR 121 (149) Q Consensus 97 lsl~~~~PI~~gILt~~n~~QA~~R 121 (149) .+.++++|.+=|+.|+....+|++. T Consensus 103 ~a~~~~i~~iPGv~TpsEi~~A~~~ 127 (213) T d1wbha1 103 AATEGTIPLIPGISTVSELMLGMDY 127 (213) T ss_dssp HHHHSSSCEEEEESSHHHHHHHHHT T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHC T ss_conf 9985598755882877999999977 No 34 >d1oi4a1 c.23.16.2 (A:23-192) Hypothetical protein YhbO {Escherichia coli [TaxId: 562]} Probab=47.93 E-value=4.3 Score=18.84 Aligned_cols=94 Identities=10% Similarity=0.158 Sum_probs=53.7 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH------HHH-HHHHHHHHHHHHHHCCCCCCEEEEEEEEEC Q ss_conf 8717999803128999999999999999879955555300------144-226999999863311378535665412000 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP------GVL-EIPAAVSMVMNAKTRSVTYDGIIVLGVVMR 77 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP------Ga~-EiP~a~~~~~~~~~~~~~~D~vIaLG~VIk 77 (149) +|||+|+..+-+++. =+-+..+.|.+.|++++.+... |.. .++......+.. ....+||+++.-|- T Consensus 1 ~KkIail~~dgf~~~---E~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~~~~~v~~d~~l~~-~~~~~yDalivpGG--- 73 (170) T d1oi4a1 1 SKKIAVLITDEFEDS---EFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDE-VTPAEFDALLLPGG--- 73 (170) T ss_dssp CCEEEEECCTTBCTH---HHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGG-CCGGGCSEEEECCB--- T ss_pred CCEEEEEECCCCCHH---HHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCEEEECCCCHHH-CCHHHCEEEEECCC--- T ss_conf 988999947983799---99999999997899899624789944665036717955871799-89515629997240--- Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 665246789999999999999743997056 Q gi|254780346|r 78 GKTAHCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 78 GeT~H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) .-..+ +..++-...+.+-..+.+.||+- T Consensus 74 -~~~~~-l~~~~~~~~~i~~~~~~~k~i~a 101 (170) T d1oi4a1 74 -HSPDY-LRGDNRFVTFTRDFVNSGKPVFA 101 (170) T ss_dssp -THHHH-HTTSHHHHHHHHHHHHTTCCEEE T ss_pred -HHHHH-HCCCHHHHHHHHHHHHCCCEEEE T ss_conf -46656-42483789999988631781452 No 35 >d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]} Probab=45.69 E-value=9.3 Score=16.74 Aligned_cols=34 Identities=3% Similarity=-0.016 Sum_probs=20.0 Q ss_pred EEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 179998031-2899999999999999987995555 Q gi|254780346|r 7 HVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSS 40 (149) Q Consensus 7 kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~ 40 (149) +|+++.... +++.-..++.|..+.+.+.|..+.. T Consensus 42 ~I~vi~p~~~~~~f~~~~~~~~~~~~~~~g~~~~i 76 (338) T d1jx6a_ 42 KISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQL 76 (338) T ss_dssp EEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEE T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEE T ss_conf 89999899987789999999999999975995799 No 36 >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Probab=45.11 E-value=4.6 Score=18.64 Aligned_cols=87 Identities=9% Similarity=0.029 Sum_probs=58.7 Q ss_pred HHHHHHHHCCCCEEE--EEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHH---------HHHHHH Q ss_conf 999999987995555--530014422699999986331137853566541200066524678999---------999999 Q gi|254780346|r 26 GCVNVLHSRAVQWSS--IVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAH---------AVTRGL 94 (149) Q Consensus 26 ga~~~l~~~~~~~~~--i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~---------~v~~gl 94 (149) ...+.|.+.|+..-. .+.|+++|.- +.+.+ ...++..|-.|.|..-++- +...+ .....+ T Consensus 25 ~~~~al~~~Gi~~iEitlr~p~a~~~i---~~l~~----~~~~~~~vGaGTV~~~~~~--~~a~~aGa~fivsP~~~~~v 95 (202) T d1wa3a1 25 EKALAVFEGGVHLIEITFTVPDADTVI---KELSF----LKEKGAIIGAGTVTSVEQC--RKAVESGAEFIVSPHLDEEI 95 (202) T ss_dssp HHHHHHHHTTCCEEEEETTSTTHHHHH---HHTHH----HHHTTCEEEEESCCSHHHH--HHHHHHTCSEEECSSCCHHH T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHH---HHHHH----HCCCCCEEEECCCCCHHHH--HHHHHHCCCEEECCCCCHHH T ss_conf 999999986998899955896289999---99998----5089848985142337899--99986056477478773999 Q ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHH Q ss_conf 999974399705654255889999995 Q gi|254780346|r 95 VDLSINGSLPIGNGIVVVDSEQQAFDR 121 (149) Q Consensus 95 ~~lsl~~~~PI~~gILt~~n~~QA~~R 121 (149) .+.+.++++|.+-|+.|+....+|++. T Consensus 96 ~~~~~~~~i~~iPGv~TpsEi~~A~~~ 122 (202) T d1wa3a1 96 SQFCKEKGVFYMPGVMTPTELVKAMKL 122 (202) T ss_dssp HHHHHHHTCEEECEECSHHHHHHHHHT T ss_pred HHHHHHCCCCEECCCCCHHHHHHHHHC T ss_conf 999986599561781868899999977 No 37 >d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]} Probab=45.03 E-value=9.6 Score=16.68 Aligned_cols=35 Identities=6% Similarity=0.066 Sum_probs=19.8 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 71799980312899999999999999987995555 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS 40 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~ 40 (149) +-|++|........-..+++|+.+.++++|++... T Consensus 2 ~tIgvvvp~~~~~f~~~~~~gi~~~a~~~g~~~~i 36 (271) T d2dria_ 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVV 36 (271) T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEE T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEE T ss_conf 88999938898989999999999999974998999 No 38 >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} Probab=40.81 E-value=11 Score=16.28 Aligned_cols=95 Identities=16% Similarity=0.116 Sum_probs=54.7 Q ss_pred HHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH---CCCCCC Q ss_conf 99999863311378535665412000665246789999999999999743997056542558899999950---656574 Q gi|254780346|r 52 AVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV---SPSHLD 128 (149) Q Consensus 52 a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~---~~~~~n 128 (149) .....++.-.....+|+++++...-........-.+......+.+. ...+|+....+.-...+++.++. +.-.-+ T Consensus 65 ~~~~~l~~~~~d~~vd~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kpv~~~~~~~~~~~~~~~~l~~~Gip~f~ 142 (163) T d2csua3 65 DYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEV--NNEKPVLAMFMAGYVSEKAKELLEKNGIPTYE 142 (163) T ss_dssp HHHHHHHHHHHSTTCSEEEEEEECCCSTTCCSSHHHHHHHHHHHHH--CCCCCEEEEEECTTTTHHHHHHHHTTTCCEES T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHH--CCCCCEEEEECCCCCHHHHHHHHHHCCCCCCC T ss_conf 9999999997598768798861257766555899999999999983--69972799989998769999999988998679 Q ss_pred CHHHHHHHHHHHHHHHHHHC Q ss_conf 56999999999999998636 Q gi|254780346|r 129 RGGCAARSALAMIELKKSLS 148 (149) Q Consensus 129 kG~eaa~Aal~mi~l~~~l~ 148 (149) --.+|++|.-.+.+..|+.+ T Consensus 143 ~pe~a~~Al~~l~~~~r~~~ 162 (163) T d2csua3 143 RPEDVASAAYALVEQAKNVG 162 (163) T ss_dssp SHHHHHHHHHHHHHHHHHTT T ss_pred CHHHHHHHHHHHHHHHHCCC T ss_conf 99999999999999986679 No 39 >d2f7wa1 c.57.1.1 (A:2-174) MogA {Shewanella oneidensis [TaxId: 70863]} Probab=40.62 E-value=11 Score=16.26 Aligned_cols=80 Identities=13% Similarity=0.054 Sum_probs=44.2 Q ss_pred CCCEEEEEEEC---HHHHHHHHHHHHHHHHHHHCCCCEEE-E--EHHHHHHH-HHHHHHHHHHHHCCCCCCEEEEEEEEE Q ss_conf 58717999803---12899999999999999987995555-5--30014422-699999986331137853566541200 Q gi|254780346|r 4 FIPHVLIIEAR---FYENLSAMLFEGCVNVLHSRAVQWSS-I--VTPGVLEI-PAAVSMVMNAKTRSVTYDGIIVLGVVM 76 (149) Q Consensus 4 ~~~kI~IV~s~---~~~~i~~~ll~ga~~~l~~~~~~~~~-i--~VPGa~Ei-P~a~~~~~~~~~~~~~~D~vIaLG~VI 76 (149) .++|++||... +...+.|.--.-..+.|.+.|++... . .||.-.+. -.++..+ ..+..||-+++-|=+= T Consensus 1 s~~rv~IitvsD~~~~G~~~D~~gp~l~~~L~~~G~~~~~v~~~ivpDd~~~I~~~l~~~----~~~~~~dlIittGGtG 76 (173) T d2f7wa1 1 SKAKIGIVTVSDRASAGIYEDISGKAIIDTLNDYLTSEWEPIYQVIPDEQDVIETTLIKM----ADEQDCCLIVTTGGTG 76 (173) T ss_dssp CCEEEEEEEECHHHHHCCSCCHHHHHHHHHHHHHBCSCEEEEEEEECSCHHHHHHHHHHH----HHTSCEEEEEEESCCS T ss_pred CCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHH----HHCCCCCEEEEECCCC T ss_conf 997799999688876798667879999999998298754888997088589888876433----2214651899840345 Q ss_pred CCCCCHHHHHHHHH Q ss_conf 06652467899999 Q gi|254780346|r 77 RGKTAHCDVIAHAV 90 (149) Q Consensus 77 kGeT~H~e~I~~~v 90 (149) -+ |.|....++ T Consensus 77 ~~---~~D~T~ea~ 87 (173) T d2f7wa1 77 PA---KRDVTPEAT 87 (173) T ss_dssp SS---TTCCHHHHH T ss_pred CC---CCHHHHHHH T ss_conf 55---422578887 No 40 >d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=38.26 E-value=7.9 Score=17.21 Aligned_cols=92 Identities=11% Similarity=0.164 Sum_probs=50.2 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEE-----HHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC Q ss_conf 179998031289999999999999998799555553-----001442269999998633113785356654120006652 Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV-----TPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTA 81 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~-----VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~ 81 (149) ||+|+.+.-.++.- +.+..+.|.+.|++++.+. |.+..-++......+.. ....+||+++.-|- ... T Consensus 2 Kv~il~~dgf~~~E---~~~p~~~l~~ag~~v~~vs~~~~~V~~~~g~~i~~d~~~~~-~~~~~~d~viipGg----~~~ 73 (166) T d1g2ia_ 2 KVLFLTANEFEDVE---LIYPYHRLKEEGHEVYIASFERGTITGKHGYSVKVDLTFDK-VNPEEFDALVLPGG----RAP 73 (166) T ss_dssp EEEEECCTTBCHHH---HHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGG-CCGGGCSEEEECCB----SHH T ss_pred EEEEEECCCCCHHH---HHHHHHHHHHCCCEEEEEECCCCEEEECCCCEEECCCCHHH-CCCCCCCEEEEECC----CCH T ss_conf 89999389868999---99999999988998999968882676429917752461899-58243518998033----413 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEE Q ss_conf 46789999999999999743997056 Q gi|254780346|r 82 HCDVIAHAVTRGLVDLSINGSLPIGN 107 (149) Q Consensus 82 H~e~I~~~v~~gl~~lsl~~~~PI~~ 107 (149) +... .+.-...+.+-..+.+.||+- T Consensus 74 ~~~~-~~~~~~~~l~~~~~~~k~i~a 98 (166) T d1g2ia_ 74 ERVR-LNEKAVSIARKMFSEGKPVAS 98 (166) T ss_dssp HHHT-TCHHHHHHHHHHHHTTCCEEE T ss_pred HHHC-CCHHHHHHHHHHHHCCCEEEE T ss_conf 3312-485778999998852874520 No 41 >d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]} Probab=37.56 E-value=12 Score=15.96 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=36.2 Q ss_pred CCEEEEEEECH-HHHHHHHHHHHHHHHHHHCCCCEEEEE-HHH--HHHHHHHHHHHHHHHHCCCCCCEEEEEE Q ss_conf 87179998031-289999999999999998799555553-001--4422699999986331137853566541 Q gi|254780346|r 5 IPHVLIIEARF-YENLSAMLFEGCVNVLHSRAVQWSSIV-TPG--VLEIPAAVSMVMNAKTRSVTYDGIIVLG 73 (149) Q Consensus 5 ~~kI~IV~s~~-~~~i~~~ll~ga~~~l~~~~~~~~~i~-VPG--a~EiP~a~~~~~~~~~~~~~~D~vIaLG 73 (149) .+|++||.++- ++. ...++...+.|++.++.+.++. +.+ .+|- +....+ ..+..++|.+|++| T Consensus 28 g~k~liV~~~~~~~~--~g~~~~v~~~L~~~~i~~~~f~~v~~~p~~~~---v~~~~~-~~~~~~~D~IIavG 94 (359) T d1o2da_ 28 GKRALVVTGKSSSKK--NGSLDDLKKLLDETEISYEIFDEVEENPSFDN---VMKAVE-RYRNDSFDFVVGLG 94 (359) T ss_dssp CSEEEEEEESSGGGT--SSHHHHHHHHHHHTTCEEEEEEEECSSCBHHH---HHHHHH-HHTTSCCSEEEEEE T ss_pred CCEEEEEECCCHHHH--HHHHHHHHHHHHHCCCEEEEECCCCCCCCHHH---HHHHHH-HCCCCCCCEEEECC T ss_conf 995899985868887--40999999999876984999757468979899---987642-00135775688516 No 42 >d1sqsa_ c.23.5.5 (A:) Hypothetical protein SP1951 {(Streptococcus pneumoniae) [TaxId: 1313]} Probab=36.97 E-value=13 Score=15.91 Aligned_cols=38 Identities=13% Similarity=0.092 Sum_probs=28.2 Q ss_pred CCEEEEEEECHHH-HHHHHHHHHHHHHHHHCC-CCEEEEE Q ss_conf 8717999803128-999999999999999879-9555553 Q gi|254780346|r 5 IPHVLIIEARFYE-NLSAMLFEGCVNVLHSRA-VQWSSIV 42 (149) Q Consensus 5 ~~kI~IV~s~~~~-~i~~~ll~ga~~~l~~~~-~~~~~i~ 42 (149) |+||+|+.++-.+ ..+..|.+-+.+.|.+.+ ++++.+. T Consensus 1 MkkI~ii~gS~r~~s~t~~l~~~~~~~l~~~~~~e~~~~~ 40 (232) T d1sqsa_ 1 MNKIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRT 40 (232) T ss_dssp CCEEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEEC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9789999898999989999999999998754992899996 No 43 >d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]} Probab=36.26 E-value=13 Score=15.84 Aligned_cols=39 Identities=10% Similarity=0.105 Sum_probs=31.3 Q ss_pred CCEEEEEEECHHHH-HHHHHHHHHHHHHHHCCCCEEEEEH Q ss_conf 87179998031289-9999999999999987995555530 Q gi|254780346|r 5 IPHVLIIEARFYEN-LSAMLFEGCVNVLHSRAVQWSSIVT 43 (149) Q Consensus 5 ~~kI~IV~s~~~~~-i~~~ll~ga~~~l~~~~~~~~~i~V 43 (149) .+||+++.++-.++ .+..|++-+.+.+.+.|++.+.+.. T Consensus 34 ~~KIl~I~GS~R~~s~s~~la~~~~~~l~~~G~ev~~idL 73 (233) T d2fzva1 34 PVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDP 73 (233) T ss_dssp CCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCC T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEEECC T ss_conf 9869999598999887899999999971036738999746 No 44 >d1wo8a1 c.24.1.2 (A:1-126) Methylglyoxal synthase, MgsA {Thermus thermophilus [TaxId: 274]} Probab=35.73 E-value=13 Score=15.78 Aligned_cols=106 Identities=9% Similarity=0.061 Sum_probs=56.0 Q ss_pred CCEEEEEEECHHHH----HHHHHHH-----------HHHHHHHHC-CCCEEEEEHHHHHH-HHHHHHHHHHHHHCCCCCC Q ss_conf 87179998031289----9999999-----------999999987-99555553001442-2699999986331137853 Q gi|254780346|r 5 IPHVLIIEARFYEN----LSAMLFE-----------GCVNVLHSR-AVQWSSIVTPGVLE-IPAAVSMVMNAKTRSVTYD 67 (149) Q Consensus 5 ~~kI~IV~s~~~~~----i~~~ll~-----------ga~~~l~~~-~~~~~~i~VPGa~E-iP~a~~~~~~~~~~~~~~D 67 (149) |++|++|..+=-++ +...+.+ |.-+.|.++ |.++..+. ++.-+ -|-...++. +++.| T Consensus 1 ~~~ialiAhD~dK~~~~~~a~~~~~ll~gf~l~AT~GTa~~L~~~~g~~v~~~~-~~~~gg~~~i~d~I~-----~g~Id 74 (126) T d1wo8a1 1 MKALALIAHDAKKDEMVAFCLRHKDVLARYPLLATGTTGARIQEATGLAVERVL-SGPLGGDLQIGARVA-----EGKVL 74 (126) T ss_dssp CCEEEEEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHHHHCCCCEECC-CTTTTHHHHHHHHHH-----TTCEE T ss_pred CCEEEEEHHHCCHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHCCCEEEEEE-ECCCCCCCCHHHHHH-----CCCCC T ss_conf 955898613166299999999999986070799517799999982595689996-268899989899998-----29742 Q ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 5665412000665246789999999999999743997056542558899999950 Q gi|254780346|r 68 GIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 68 ~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .||-+- ...+.+- . ..-...|.++++++++|+...+=|++-.-.+++|- T Consensus 75 lVIn~~---~~~~~~~-~--~~D~~~iRR~a~~~~IP~~Tn~~~A~a~v~al~~g 123 (126) T d1wo8a1 75 AVVFLQ---DPLTAKP-H--EPDVQALMRVCNVHGVPLATNLVAAEALIAWIRKG 123 (126) T ss_dssp EEEEEC---CTTSCCT-T--HHHHHHHHHHHHHTTCCEECSHHHHHHHHHHHHHT T ss_pred EEEEEC---CCCCCCC-C--CCCHHHHHHHHHHCCCCEEECHHHHHHHHHHHHHC T ss_conf 899815---8887775-5--10289999999973999896799999999999844 No 45 >d1pfka_ c.89.1.1 (A:) ATP-dependent phosphofructokinase {Escherichia coli [TaxId: 562]} Probab=35.28 E-value=14 Score=15.74 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=53.8 Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE-------------EE-----------HHHH---------HHHH Q ss_conf 5871799980312899999999999999987995555-------------53-----------0014---------4226 Q gi|254780346|r 4 FIPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSS-------------IV-----------TPGV---------LEIP 50 (149) Q Consensus 4 ~~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~-------------i~-----------VPGa---------~EiP 50 (149) |||||+|+.|-=-..-.+..+.+..+.+...+.++-- +. .||+ |+-+ T Consensus 1 ~mkrIgIltsGG~~pg~Na~i~~~v~~~~~~~~~v~g~~~G~~Gl~~~~~~~l~~~~v~~~~~~gGs~lgt~R~~~~~~~ 80 (320) T d1pfka_ 1 MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDE 80 (320) T ss_dssp CCCEEEEEECSSCCTTHHHHHHHHHHHHHHTTCEEEEESTHHHHHHTTCEEEECSGGGTTCTTCCSCTTCCCCCGGGGSH T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHCCCCEEECCHHHHHHHHHCCCCCCCCCCCCCCCCH T ss_conf 98649998668886688999999999998789989999466888727985729999998898469985231478877665 Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH Q ss_conf 999999863311378535665412000665246789999999999999743997056542558899999950 Q gi|254780346|r 51 AAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 (149) Q Consensus 51 ~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~ 122 (149) .-.+++++.. ...+.|+++.+| |+ .+.++...++ ++.+|++---=|.+|.-.-.+.| T Consensus 81 ~~~~~~~~~l-~~~~I~~li~iG----G~---------~s~~~a~~l~-~~~~~vigiPkTIDNDl~~td~s 137 (320) T d1pfka_ 81 NIRAVAIENL-KKRGIDALVVIG----GD---------GSYMGAMRLT-EMGFPCIGLPGTIDNDIKGTDYT 137 (320) T ss_dssp HHHHHHHHHH-HHTTCCEEEEEE----CH---------HHHHHHHHHH-HTTCCEEEEEBCTTCCCTTCSCC T ss_pred HHHHHHHHHH-HHCCCCEEEEEC----CC---------HHHHHHHHHH-HCCCCEEEEEEEECCCCCCCCCC T ss_conf 5550388899-876998899967----96---------5899999987-51665222301431788886788 No 46 >d2a9va1 c.23.16.1 (A:1-196) GMP synthase subunit A, GuaAA {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Probab=33.83 E-value=14 Score=15.60 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=48.4 Q ss_pred CCEEEEEEE--CHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 871799980--312899999999999999987995555530014422699999986331137853566541200066524 Q gi|254780346|r 5 IPHVLIIEA--RFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 5 ~~kI~IV~s--~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) |.||+||-- .|...+ ...|.+.|++.+++ | ++.+. ....+|||+|..|- .-.. T Consensus 1 m~ki~iiD~g~~~~~~i--------~r~l~~lg~~~~i~--~--~d~~~---------~~~~~~dgiIl~Gg----~~~~ 55 (196) T d2a9va1 1 MLKIYVVDNGGQWTHRE--------WRVLRELGVDTKIV--P--NDIDS---------SELDGLDGLVLSGG----APNI 55 (196) T ss_dssp CCBEEEEEESCCTTCHH--------HHHHHHTTCBCCEE--E--TTSCG---------GGGTTCSEEEEEEE----CSCG T ss_pred CCEEEEEECCCCHHHHH--------HHHHHHCCCEEEEE--E--CCCCH---------HHHHCCCCEEEECC----CCCC T ss_conf 98899998987299999--------99999789869999--3--98998---------99726880799336----5311 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC Q ss_conf 67899999999999997439970565425588999999506 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~ 123 (149) ++-. .....+.+...+.++|+. || =---|.+..+. T Consensus 56 ~~~~--~~~~~l~~~~~~~~~Pil-GI---C~G~Qll~~~~ 90 (196) T d2a9va1 56 DEEL--DKLGSVGKYIDDHNYPIL-GI---CVGAQFIALHF 90 (196) T ss_dssp GGTG--GGHHHHHHHHHHCCSCEE-EE---THHHHHHHHHT T ss_pred CCCC--CHHHHHHHHHHHCCCEEE-EE---EHHHHHHHHCC T ss_conf 1021--024557777752581589-76---00003332103 No 47 >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Probab=31.89 E-value=9.8 Score=16.60 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=25.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 9999999999999998799555553001442269999998633113785356654120 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) |++..|++-|.+.+.+.+.+.-.+..-.+.++|+ ..+.||.|++.+++ T Consensus 45 D~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~----------~~~~fD~v~~~~~l 92 (234) T d1xxla_ 45 DATKEMVEVASSFAQEKGVENVRFQQGTAESLPF----------PDDSFDIITCRYAA 92 (234) T ss_dssp ESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS----------CTTCEEEEEEESCG T ss_pred ECCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------CCCCCCEEEEECEE T ss_conf 4871430233310000123322233332222345----------55454333210103 No 48 >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Probab=31.10 E-value=16 Score=15.32 Aligned_cols=10 Identities=20% Similarity=0.355 Sum_probs=3.5 Q ss_pred HHHHHHHHHH Q ss_conf 0144226999 Q gi|254780346|r 44 PGVLEIPAAV 53 (149) Q Consensus 44 PGa~EiP~a~ 53 (149) =|+-.+|+.- T Consensus 156 GG~sr~p~l~ 165 (198) T d1dkgd2 156 GGQTRMPMVQ 165 (198) T ss_dssp SGGGGSHHHH T ss_pred CCCCCCHHHH T ss_conf 6764777999 No 49 >d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]} Probab=29.59 E-value=17 Score=15.16 Aligned_cols=97 Identities=16% Similarity=0.177 Sum_probs=53.5 Q ss_pred CEEEEEE---ECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 7179998---0312899999999999999987995555530014422699999986331137853566541200066524 Q gi|254780346|r 6 PHVLIIE---ARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 6 ~kI~IV~---s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) ||.++|. |.-+. -+..+.+.|.+.|+++++..+-..=+.--.++.+. ...||.+++.| ||- T Consensus 1 p~~l~i~N~~s~~~~-----~~~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~-----~~~~d~Ivv~G----GDG-- 64 (295) T d2bona1 1 PASLLILNGKSTDNL-----PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEAR-----KFGVATVIAGG----GDG-- 64 (295) T ss_dssp CCEEEEECSSSTTCH-----HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHH-----HHTCSEEEEEE----SHH-- T ss_pred CCEEEEECCCCCCCH-----HHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHH-----HCCCCEEEEEC----CCC-- T ss_conf 949999878877865-----79999999997899799998188345999999998-----66997899977----982-- Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC Q ss_conf 678999999999999974399705654255889999995065 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~ 124 (149) --++|.+||++..-. ..| ..|||-..+.. .+.|+-+ T Consensus 65 ---Tv~ev~~gl~~~~~~-~~p-~lgilP~GTgN-~~Ar~lg 100 (295) T d2bona1 65 ---TINEVSTALIQCEGD-DIP-ALGILPLGTAN-DFATSVG 100 (295) T ss_dssp ---HHHHHHHHHHHCCSS-CCC-EEEEEECSSSC-HHHHHTT T ss_pred ---HHHHHHHHHHHCCCC-CCC-EEEEEECCCCC-CHHHHCC T ss_conf ---798999878750678-896-59999778665-3087749 No 50 >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Probab=29.36 E-value=14 Score=15.72 Aligned_cols=48 Identities=13% Similarity=0.180 Sum_probs=30.6 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEE Q ss_conf 9999999999999998799555553001442269999998633113785356654120 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVV 75 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~V 75 (149) |++..|++-|++.+.+.+...-.+..-.+.++| ....+||.|++.+++ T Consensus 90 D~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~----------~~~~~fD~I~~~~~l 137 (222) T d2ex4a1 90 DITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT----------PEPDSYDVIWIQWVI 137 (222) T ss_dssp ESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC----------CCSSCEEEEEEESCG T ss_pred ECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----------CCCCCCCCCCCCCCC T ss_conf 067888410112321122222333221122222----------333323321123332 No 51 >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Probab=26.85 E-value=15 Score=15.47 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHCCCC Q ss_conf 99999999999999987995 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQ 37 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~ 37 (149) |++..|++.|++.+.+.+.+ T Consensus 44 D~s~~~i~~A~~~~~~~~~~ 63 (231) T d1vl5a_ 44 DLTEDILKVARAFIEGNGHQ 63 (231) T ss_dssp ESCHHHHHHHHHHHHHTTCC T ss_pred ECCHHHHHHHHHCCCCCCCC T ss_conf 89889986655023332222 No 52 >d1f4pa_ c.23.5.1 (A:) Flavodoxin {Desulfovibrio vulgaris [TaxId: 881]} Probab=24.95 E-value=20 Score=14.64 Aligned_cols=38 Identities=18% Similarity=0.120 Sum_probs=27.7 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH Q ss_conf 717999803128999999999999999879955555300 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP 44 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP 44 (149) ||+.|+.++-+-. ++.+-+...+.|.+.|++++.+.++ T Consensus 1 pkv~I~Y~S~tG~-te~~A~~i~~~l~~~g~~v~~~~~~ 38 (147) T d1f4pa_ 1 PKALIVYGSTTGN-TEYTAETIARELADAGYEVDSRDAA 38 (147) T ss_dssp CEEEEEEECSSSH-HHHHHHHHHHHHHHHTCEEEEEEGG T ss_pred CCEEEEEECCCHH-HHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 9699999998705-9999999999998779858998513 No 53 >d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Probab=24.91 E-value=20 Score=14.64 Aligned_cols=121 Identities=15% Similarity=0.075 Sum_probs=70.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHH Q ss_conf 87179998031289999999999999998799555553001442269999998633113785356654120006652467 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCD 84 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e 84 (149) .|+++||..+--. -...+.|.+.|+++|++++.. |-.+..-|--...+++.. ....++.+|+.- |-.-|-- T Consensus 2 ~P~V~IimGS~SD---~~v~~~a~~~L~~~gI~~e~~-v~SAHR~p~~l~~~~~~~-e~~~~~viIa~A----G~aaaLp 72 (159) T d1u11a_ 2 APVVGIIMGSQSD---WETMRHADALLTELEIPHETL-IVSAHRTPDRLADYARTA-AERGLNVIIAGA----GGAAHLP 72 (159) T ss_dssp CCSEEEEESSGGG---HHHHHHHHHHHHHTTCCEEEE-ECCTTTCHHHHHHHHHHT-TTTTCCEEEEEE----ESSCCHH T ss_pred CCEEEEEECCHHH---HHHHHHHHHHHHHHCCCEEEE-EEHHHHCHHHHHHHHHHH-HHCCCEEEEEEE----CCCCCCC T ss_conf 5969999577755---999999999999909955998-746864868899999999-865974899871----5888776 Q ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCC--HHH---HHHHHC------C--CCCCCHHHHHHHHHHHHHHH Q ss_conf 899999999999997439970565425588--999---999506------5--65745699999999999999 Q gi|254780346|r 85 VIAHAVTRGLVDLSINGSLPIGNGIVVVDS--EQQ---AFDRVS------P--SHLDRGGCAARSALAMIELK 144 (149) Q Consensus 85 ~I~~~v~~gl~~lsl~~~~PI~~gILt~~n--~~Q---A~~R~~------~--~~~nkG~eaa~Aal~mi~l~ 144 (149) =+ ++-.+..|++..=.-... -.. +.-..- . -..+.|..||..|.+|+.+. T Consensus 73 gv----------va~~t~~PVIgvP~~~~~~~g~d~l~S~~qMP~g~pv~tv~vg~~~~~nAa~~A~~IL~~~ 135 (159) T d1u11a_ 73 GM----------CAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGAKNAALLAASILALY 135 (159) T ss_dssp HH----------HHHHCSSCEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHGGG T ss_pred CC----------EEEECCEEEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCC T ss_conf 63----------3221350578852465666444447888657679996379843775177999999998269 No 54 >d1o1ya_ c.23.16.1 (A:) Hypothetical protein TM1158 {Thermotoga maritima [TaxId: 2336]} Probab=23.99 E-value=21 Score=14.53 Aligned_cols=94 Identities=16% Similarity=0.225 Sum_probs=49.9 Q ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH---- Q ss_conf 1799980312899999999999999987995555530014422699999986331137853566541200066524---- Q gi|254780346|r 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH---- 82 (149) Q Consensus 7 kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H---- 82 (149) ||+|+.-.=.++ ..-..+.|.+.|++++.+++.---.+| ..-.+|||+|..| |.-.- T Consensus 5 rvli~qh~~~e~-----~G~~~~~l~~~g~~~~~~~~~~~~~~p----------~~l~~~d~iii~G----gp~~~~d~~ 65 (230) T d1o1ya_ 5 RVLAIRHVEIED-----LGMMEDIFREKNWSFDYLDTPKGEKLE----------RPLEEYSLVVLLG----GYMGAYEEE 65 (230) T ss_dssp EEEEECSSTTSS-----CTHHHHHHHHTTCEEEEECGGGTCCCS----------SCGGGCSEEEECC----CSCCTTCTT T ss_pred EEEEEECCCCCC-----CHHHHHHHHHCCCEEEEEECCCCCCCC----------CCHHHCCEEEECC----CCCCCCCCH T ss_conf 899997999989-----379999999789979999789987687----------6643378899829----976556410 Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCCC Q ss_conf -6789999999999999743997056542558899999950656 Q gi|254780346|r 83 -CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125 (149) Q Consensus 83 -~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~~ 125 (149) +..+.. ...+.+-.++.++|+. | .==--|++.++-+. T Consensus 66 ~~~~~~~--~~~~i~~~~~~~~Pil-G---IC~G~Qlla~alGg 103 (230) T d1o1ya_ 66 KYPFLKY--EFQLIEEILKKEIPFL-G---ICLGSQMLAKVLGA 103 (230) T ss_dssp TCTHHHH--HHHHHHHHHHHTCCEE-E---ETHHHHHHHHHTTC T ss_pred HHHHHHH--HHHHHHHHHHHCCEEE-E---EECCHHHHHHHHCC T ss_conf 0455578--9999999997311078-7---60579999998443 No 55 >d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A (SCRP-27A, EllB) {Escherichia coli [TaxId: 562]} Probab=23.72 E-value=22 Score=14.50 Aligned_cols=36 Identities=8% Similarity=0.008 Sum_probs=18.7 Q ss_pred CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEE Q ss_conf 8717999803--12899999999999999987995555 Q gi|254780346|r 5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSS 40 (149) Q Consensus 5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~ 40 (149) |+||+|+-|. ++...-+.=+-.....|.+.|++++. T Consensus 1 MkKvaviLsg~g~~DG~E~~E~~~~~~~L~raG~~v~~ 38 (217) T d1vhqa_ 1 MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVC 38 (217) T ss_dssp CCEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEE T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCEEEE T ss_conf 98799995588887742098999999999988998999 No 56 >d1vmea1 c.23.5.1 (A:251-398) ROO-like flavoprotein TM0755, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Probab=22.37 E-value=23 Score=14.33 Aligned_cols=69 Identities=10% Similarity=0.073 Sum_probs=42.4 Q ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHH--HHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 871799980312899999999999999987995555530014--422699999986331137853566541200066524 Q gi|254780346|r 5 IPHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGV--LEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 5 ~~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa--~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) +.||+||+.+.+ .-|+.+-+...+.|.+.|++.+.+.++.. .++...... -.+||+++.--.+. +...+ T Consensus 3 ~~kv~IiY~S~t-GnTe~~A~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~-------l~~~d~iiigspt~-~~~~~ 73 (148) T d1vmea1 3 KGKVTVIYDSMY-GFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKD-------IPDSEALIFGVSTY-EAEIH 73 (148) T ss_dssp TTEEEEEEECSS-SHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHH-------STTCSEEEEEECEE-TTEEC T ss_pred CCEEEEEEECCC-CHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHH-------HHHCCEEEEEECCC-CCCCC T ss_conf 888999999988-1899999999999986799699996454432105676644-------97788869993552-88159 No 57 >d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840 {Haemophilus influenzae [TaxId: 727]} Probab=21.86 E-value=21 Score=14.58 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=25.7 Q ss_pred EEECHHHHHHHHHHHHHHHHHHHCCCCEE Q ss_conf 98031289999999999999998799555 Q gi|254780346|r 11 IEARFYENLSAMLFEGCVNVLHSRAVQWS 39 (149) Q Consensus 11 V~s~~~~~i~~~ll~ga~~~l~~~~~~~~ 39 (149) +.|+|..+-++.++..-...|++++++.| T Consensus 3 i~SKYs~~qvE~il~el~~vLeKh~Ap~D 31 (72) T d2juza1 3 QHSKYSDAQLSAIVNDMIAVLEKHKAPVD 31 (72) T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHTCCSH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 53202288899999999999986599840 No 58 >d2nv0a1 c.23.16.1 (A:1-195) Hypothetical protein YaaE {Bacillus subtilis [TaxId: 1423]} Probab=21.70 E-value=24 Score=14.25 Aligned_cols=86 Identities=10% Similarity=0.125 Sum_probs=46.6 Q ss_pred CCEEEEEEEC--HHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 8717999803--12899999999999999987995555530014422699999986331137853566541200066524 Q gi|254780346|r 5 IPHVLIIEAR--FYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 5 ~~kI~IV~s~--~~~~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) |.||+|+.=. +++ ..+.|++.|++...++-|.. + .++|++|--| |..+. T Consensus 1 m~~igv~~~~G~~~~---------~~~al~~~G~~~~~i~~~~~--l--------------~~~D~lIlPG----G~~~~ 51 (195) T d2nv0a1 1 MLTIGVLGLQGAVRE---------HIHAIEACGAAGLVVKRPEQ--L--------------NEVDGLILPG----GESTT 51 (195) T ss_dssp CCEEEEECSSSCCHH---------HHHHHHHTTCEEEEECSGGG--G--------------GGCSEEEECC----SCHHH T ss_pred CCEEEEEECCCHHHH---------HHHHHHHCCCCEEEECCHHH--H--------------HHCCEEEECC----CCCCH T ss_conf 929999962882999---------99999987991999899899--8--------------3188799779----98447 Q ss_pred HHHHHHHH-HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHC Q ss_conf 67899999-999999997439970565425588999999506 Q gi|254780346|r 83 CDVIAHAV-TRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 (149) Q Consensus 83 ~e~I~~~v-~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~ 123 (149) ........ .....+-..+.++| +.||= .--|.+.++. T Consensus 52 ~~~~~~~~~~~~~I~~~~~~g~p-ilGIC---~G~Qll~~~~ 89 (195) T d2nv0a1 52 MRRLIDTYQFMEPLREFAAQGKP-MFGTC---AGLIILAKEI 89 (195) T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-EEEET---HHHHHHSBCC T ss_pred HHHHHHHCHHCCHHHHHHHHCCE-EEECC---CCHHHHHHHH T ss_conf 99974431001034433220212-44005---5679998660 No 59 >d1o63a_ c.94.1.1 (A:) ATP phosphoribosyltransferase (ATP-PRTase, HisG), catalytic domain {Thermotoga maritima [TaxId: 2336]} Probab=21.41 E-value=24 Score=14.21 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=20.0 Q ss_pred HHHHHHHCCCCEEEEEHHHHHHHH Q ss_conf 999999879955555300144226 Q gi|254780346|r 27 CVNVLHSRAVQWSSIVTPGVLEIP 50 (149) Q Consensus 27 a~~~l~~~~~~~~~i~VPGa~EiP 50 (149) +.+.|.+.|++++++..-||-|+. T Consensus 112 t~~f~~~~gi~~~ii~l~GavE~A 135 (203) T d1o63a_ 112 TQRYCESKGWHCRIIPLKGSVELA 135 (203) T ss_dssp HHHHHHHHTCCEEEEECSSCTTHH T ss_pred HHHHHHHCCCCEEEEECCCCCCCC T ss_conf 999998716731798602778788 No 60 >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Probab=20.83 E-value=25 Score=14.14 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=40.0 Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 99999999999999987995555530014422699999986331137853566541200066524678999999999999 Q gi|254780346|r 18 NLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDL 97 (149) Q Consensus 18 ~i~~~ll~ga~~~l~~~~~~~~~i~VPGa~EiP~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H~e~I~~~v~~gl~~l 97 (149) |+++.|++-|++.+.+.+.+++.+. -.+.++| ..++||.+++++.++- +-... .....|.++ T Consensus 70 D~s~~mi~~a~~~~~~~~~~i~~~~-~d~~~l~-----------~~~~fD~I~~~~~~~~-----~~~~~-~~~~~L~~~ 131 (251) T d1wzna1 70 DLHEEMLRVARRKAKERNLKIEFLQ-GDVLEIA-----------FKNEFDAVTMFFSTIM-----YFDEE-DLRKLFSKV 131 (251) T ss_dssp ESCHHHHHHHHHHHHHTTCCCEEEE-SCGGGCC-----------CCSCEEEEEECSSGGG-----GSCHH-HHHHHHHHH T ss_pred EECCCCCCCCCCCCCCCCCCCHHEE-HHHHHCC-----------CCCCCCHHHHHHHHHH-----CCCHH-HHHHHHHHH T ss_conf 6112221122222222233100000-0122014-----------5535446766422133-----07767-899999999 Q ss_pred HHHCCCCCEEEEECCCC Q ss_conf 97439970565425588 Q gi|254780346|r 98 SINGSLPIGNGIVVVDS 114 (149) Q Consensus 98 sl~~~~PI~~gILt~~n 114 (149) . +.-.|=|.-++...| T Consensus 132 ~-~~LkpgG~lii~~~~ 147 (251) T d1wzna1 132 A-EALKPGGVFITDFPC 147 (251) T ss_dssp H-HHEEEEEEEEEEEEC T ss_pred H-HHCCCCCEEEEEECC T ss_conf 9-975988199999666 No 61 >d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]} Probab=20.03 E-value=26 Score=14.03 Aligned_cols=124 Identities=6% Similarity=0.007 Sum_probs=60.6 Q ss_pred CEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEEHH-HHHHH--HHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCH Q ss_conf 717999803128999999999999999879955555300-14422--699999986331137853566541200066524 Q gi|254780346|r 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTP-GVLEI--PAAVSMVMNAKTRSVTYDGIIVLGVVMRGKTAH 82 (149) Q Consensus 6 ~kI~IV~s~~~~~i~~~ll~ga~~~l~~~~~~~~~i~VP-Ga~Ei--P~a~~~~~~~~~~~~~~D~vIaLG~VIkGeT~H 82 (149) .+|+++.+.-...-...-.+|+.+.+.+++.......+. ..+.- .......+.......++|++++ + T Consensus 140 ~~i~~i~g~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------~ 209 (305) T d2fvya1 140 IQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA----------N 209 (305) T ss_dssp EEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE----------S T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE----------C T ss_conf 469999478766505777888887765048753320476311210566777777776504888449995----------4 Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHCC-------CCCCCHHHHHHHHHHHHH Q ss_conf 678999999999999974399705654255889999995065-------657456999999999999 Q gi|254780346|r 83 CDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP-------SHLDRGGCAARSALAMIE 142 (149) Q Consensus 83 ~e~I~~~v~~gl~~lsl~~~~PI~~gILt~~n~~QA~~R~~~-------~~~nkG~eaa~Aal~mi~ 142 (149) .|.++..+.+++.+... ..|...|+-..+...++... ++ ....-|+.|++.++++++ T Consensus 210 ~d~~a~g~~~a~~~~g~--~~i~~vg~d~~~~~~~~i~~-g~~~~tv~q~~~~~G~~av~~l~~~l~ 273 (305) T d2fvya1 210 NDAMAMGAVEALKAHNK--SSIPVFGVDALPEALALVKS-GALAGTVLNDANNQAKATFDLAKNLAD 273 (305) T ss_dssp SHHHHHHHHHHHHHTTC--TTSCEECSBCCHHHHHHHHH-TSSCBEEECCHHHHHHHHHHHHHHHHT T ss_pred CHHHHHHHHHHHHHHCC--CCCCEEEEECCCHHHHHEEC-CCCCEEEECCHHHHHHHHHHHHHHHHC T ss_conf 61776789999998189--98857988078245543126-995279957999999999999999977 Done!