RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)



>gnl|CDD|178833 PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase;
           Provisional.
          Length = 154

 Score =  129 bits (328), Expect = 2e-31
 Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 7/145 (4%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
            + I+ ARF + ++  L EG ++ L    V   +I     PG  EIP A   +      S
Sbjct: 14  RIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLA----ES 69

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
             YD +I LG V+RG+T H D +A+ V +GL D+S+   +P+G G++  D+ +QA +R  
Sbjct: 70  GKYDAVIALGAVIRGETPHFDYVANEVAKGLADVSLETGVPVGFGVLTTDTIEQAIERAG 129

Query: 124 PSHLDRGGCAARSALAMIELKKSLS 148
               ++G  AA +AL M  L K L 
Sbjct: 130 TKAGNKGAEAALAALEMANLLKQLK 154


>gnl|CDD|129220 TIGR00114, lumazine-synth, 6,7-dimethyl-8-ribityllumazine synthase.
            Archaeal members of this family are considered
           putative, although included in the seed and scoring
           above the trusted cutoff.
          Length = 138

 Score = 77.8 bits (192), Expect = 9e-16
 Identities = 43/139 (30%), Positives = 73/139 (52%), Gaps = 7/139 (5%)

Query: 8   VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIPAAVSMVMNAKTRSV 64
           V I+ ARF  +++ ML +G ++ L     +  +I     PG  E+P AV  +      + 
Sbjct: 3   VGIVIARFNRDITDMLLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLA----ETG 58

Query: 65  TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
            YD +I LG V+RG T H + +A    +G+ DL+++   P+  GI+   + +QA +R   
Sbjct: 59  KYDAVIALGCVIRGGTPHFEYVADEAAKGIADLALDYDKPVIFGILTTGTIEQAIERAGD 118

Query: 125 SHLDRGGCAARSALAMIEL 143
              ++G  AA +AL M +L
Sbjct: 119 KAGNKGVEAAVAALEMAKL 137


>gnl|CDD|178026 PLN02404, PLN02404, 6,7-dimethyl-8-ribityllumazine synthase.
          Length = 141

 Score = 75.2 bits (185), Expect = 7e-15
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 9/135 (6%)

Query: 10  IIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV---TPGVLEIP-AAVSMVMNAKTRSVT 65
           ++ ARF E ++  L EG +      +V+  +I     PG  EIP  A  +       S  
Sbjct: 12  VVVARFNEIITKNLLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAK-----SGK 66

Query: 66  YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125
           YD I+ +G V+RG T H D +A++   G++   +N  +P   G++  D  +QA +R    
Sbjct: 67  YDAILCIGAVIRGDTTHYDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAGGK 126

Query: 126 HLDRGGCAARSALAM 140
             ++G  AA +A+ M
Sbjct: 127 AGNKGAEAALTAVEM 141


>gnl|CDD|177863 PLN02216, PLN02216, protein SRG1.
          Length = 357

 Score = 26.7 bits (59), Expect = 2.5
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 34 RAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYD 67
           A QWSSI+ P V E+     M+     R V  D
Sbjct: 5  GATQWSSIIVPSVQEM-VKEKMITTVPPRYVRSD 37


>gnl|CDD|163100 TIGR03008, pepcterm_CAAX, CAAX prenyl protease-related protein.
           The CAAX prenyl protease, in eukaryotes, catalyzes three
           covalent modifications, including cleavage and
           acylation, at the C-terminus of certain proteins in a
           process connected to protein sorting. This family
           describes a bacterial protein family homologous to one
           domain of the CAAX-processing enzyme. Members of this
           protein family are found in genomes that carry a
           predicted protein sorting system, PEP-CTERM/exosortase,
           usually in the vicinity of the EpsH homolog that is the
           hallmark of the system. The function of this protein is
           unknown, but it may relate to protein motification.
          Length = 222

 Score = 26.3 bits (58), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 68  GIIVLGVVMRGKTAHCDVIAHAVTRGLVDL 97
           G+    +++R  +    ++AHAVT GL+ L
Sbjct: 182 GLAYNLLLLRTGSIMACILAHAVTNGLLGL 211


>gnl|CDD|183985 PRK13341, PRK13341, recombination factor protein RarA/unknown
           domain fusion protein; Reviewed.
          Length = 725

 Score = 25.0 bits (55), Expect = 7.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 107 NGIVVVDSEQQAFDRV 122
             +VVV++   AF+RV
Sbjct: 312 QALVVVEACAAAFERV 327


>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
          Length = 668

 Score = 25.1 bits (56), Expect = 8.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 24  FEGCVNVLHSRAVQWSSIVTPGVLEIPA 51
           F G V++L  +A ++        +EIPA
Sbjct: 157 FTGVVDLLSMKAYRYDEGGPSEEIEIPA 184


>gnl|CDD|181511 PRK08636, PRK08636, aspartate aminotransferase; Provisional.
          Length = 403

 Score = 25.0 bits (55), Expect = 8.7
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 6   PHVLIIEARFYENLSAMLFEGCVNVLHSRA---VQWSSIVTPGVLEIPAAVSMVMNAKTR 62
           P    +E  FYE L A+  +    ++   A   + +    TP +LE+  A  + + + T 
Sbjct: 187 PTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTL 246

Query: 63  SVTYD 67
           S +Y+
Sbjct: 247 SKSYN 251


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.322    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0653    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,399,181
Number of extensions: 144408
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 13
Length of query: 149
Length of database: 5,994,473
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,157,793
Effective search space: 266098752
Effective search space used: 266098752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.4 bits)