RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (149 letters)



>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase
           RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A
           2o6h_A* (A:)
          Length = 157

 Score =  125 bits (315), Expect = 3e-30
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVT 65
           H+LI+EARFY++L+  L +G    L      +  +  PG LEIP      +  A      
Sbjct: 14  HLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTE 73

Query: 66  YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125
           YDG + LG V+RG+T H D++++   R L DLS+  S+ IGNGI+ V++E+QA+      
Sbjct: 74  YDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARRE 133

Query: 126 HLDRGGCAARSALAMIELKKSL 147
             D+GG AAR+AL MI L+K  
Sbjct: 134 DKDKGGFAARAALTMIGLRKKF 155


>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI;
           2.40A {Bacillus subtilis} (A:)
          Length = 154

 Score =  118 bits (298), Expect = 3e-28
 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
            + I+  RF + +++ L  G  + L    V  + I     PG  EIP A   +   K   
Sbjct: 14  KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKK-- 71

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
             YD II LG V+RG T H D + +   +G+   +    +P+  GIV  ++ +QA +R  
Sbjct: 72  --YDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAG 129

Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
               ++G   A SA+ M  L +S 
Sbjct: 130 TKAGNKGVDCAVSAIEMANLNRSF 153


>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme
           stability, vitamin biosynthesis, transferase; 1.60A
           {Aquifex aeolicus} (A:)
          Length = 154

 Score =  117 bits (296), Expect = 4e-28
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
              I+ +RF   L   L EG ++ +     +   I     PG  EIP A   +     R 
Sbjct: 14  RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA----RK 69

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
              D +I +GV++RG T H D IA  V++GL +LS+    PI  G++  D+ +QA +R  
Sbjct: 70  EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAG 129

Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
             H ++G  AA SA+ M  L KSL
Sbjct: 130 TKHGNKGWEAALSAIEMANLFKSL 153


>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
           biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
           cerevisiae} (A:)
          Length = 168

 Score =  117 bits (295), Expect = 6e-28
 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIP-AAVSMVMNAKTR 62
            V II AR+   +   L +G +  + S  V+ ++I+    PG  E+P      V      
Sbjct: 18  RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77

Query: 63  SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
               D +I +GV+++G T H + I+ + T  L++L     +P+  G++   +E+QA  R 
Sbjct: 78  GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137

Query: 123 SPSH----LDRGGCAARSALAMIELKKSLS 148
                    + G     +A+ M       +
Sbjct: 138 GIDEAHSMHNHGEDWGAAAVEMAVKFGKNA 167


>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis; HET:
           LMZ; 3.30A {Spinacia oleracea} (A:)
          Length = 156

 Score =  117 bits (294), Expect = 9e-28
 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 6/145 (4%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV--TPGVLEIPAAVSMVMNAKTRSV 64
              I+ ARF E ++  L EG ++     +V     V   PG  E+      +     +S 
Sbjct: 15  RFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALG----KSG 70

Query: 65  TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
            Y  I+ LG V++G T+H D + ++ + G++   +N  +P   G++  D+  QA +R   
Sbjct: 71  KYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGG 130

Query: 125 SHLDRGGCAARSALAMIELKKSLSE 149
              ++G  +A +A+ M  L +   +
Sbjct: 131 KAGNKGAESALTAIEMASLFEHHLK 155


>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase,
           riboflavin biosynthesis, inhibitor binding; HET: TP6;
           1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A*
           2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* (A:)
          Length = 160

 Score =  116 bits (293), Expect = 9e-28
 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 9/146 (6%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVT 65
            + I+ + ++  +   L +G   V     +   ++V   G +EIP        A+  +  
Sbjct: 19  RLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVV------AQELARN 72

Query: 66  YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VS 123
           +D ++ LGVV+RG+T H D +  AVT+GL  +S++ S PI NG++  ++E+QA DR  + 
Sbjct: 73  HDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLP 132

Query: 124 PSHLDRGGCAARSALAMIELKKSLSE 149
            S  D+G  A  +ALA     + L  
Sbjct: 133 TSAEDKGAQATVAALATALTLRELRA 158


>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus}
           (A:)
          Length = 158

 Score =  116 bits (292), Expect = 1e-27
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
            +  I+AR++ ++     +  V  L ++      +     PG  EIP     +     R+
Sbjct: 12  KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLA----RT 67

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
             Y  I+    V+ G     D +A AV  G++ + +   +P+ + ++      ++ +   
Sbjct: 68  GRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHD 127

Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148
             H     +G  AA +AL ++  +  ++
Sbjct: 128 FFHAHFKVKGVEAAHAALQIVSERSRIA 155


>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
           riboflavin; alpha-beta, transferase; HET: INI; 2.53A
           {Mesorhizobium loti} (A:)
          Length = 157

 Score =  115 bits (290), Expect = 2e-27
 Identities = 19/148 (12%), Positives = 59/148 (39%), Gaps = 10/148 (6%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
            + ++ AR++ ++           +        ++     PG  EIP     +      +
Sbjct: 13  RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLA----ET 68

Query: 64  VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
             Y  ++    V+ G     + +A AV  G++++ ++  +P+ + ++   +   + +   
Sbjct: 69  GRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHR 128

Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148
                   +G  AAR+ + ++  ++ ++
Sbjct: 129 FFFEHFTVKGKEAARACVEILAAREKIA 156


>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin
           biosynthesis, ligand binding, transferase; 2.00A
           {Schizosaccharomyces pombe} (A:)
          Length = 159

 Score =  114 bits (287), Expect = 5e-27
 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSR-AVQWSSIVT---PGVLEIPAAVSMVMNAKTR 62
            +LI+ AR        L +G V  +  +  V+  +I     PG  E+P  +   +     
Sbjct: 19  RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI----A 74

Query: 63  SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
             TYD +I +GV+++G T H + I+ AV  GL+ + ++  +P+  G++ V +E+QA  R 
Sbjct: 75  RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134

Query: 123 SPSH-LDRGGCAARSALAMIELKK 145
             +   + G     +A+ M     
Sbjct: 135 GLNGGHNHGNDWGSAAVEMGLKAL 158


>1c41_A Lumazine synthase; riboflavin biosynthesis; HET: LMZ; 3.10A
           {Magnaporthe grisea} (A:)
          Length = 200

 Score =  113 bits (285), Expect = 8e-27
 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 37/180 (20%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVM------ 57
            + I+ AR+ E +   L  G    L +  V+ S+IV    PG  E+P AV  +       
Sbjct: 17  RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76

Query: 58  --------------------------NAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVT 91
                                        + +  +D +I +GV+++G+T H + IA +V+
Sbjct: 77  TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136

Query: 92  RGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH--LDRGGCAARSALAMIELKKSLSE 149
            GL+ + ++  +P+  G++ V ++ QA  R        + G     +A+ M   ++  + 
Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVRRRDWAA 196


>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET:
           RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
           (A:)
          Length = 156

 Score =  101 bits (254), Expect = 4e-23
 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 8/143 (5%)

Query: 7   HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTY 66
            V I++  F     A +    +  L     +      PG+ ++P A   ++         
Sbjct: 4   KVGIVDTTFARVDMASIAIKKLKELSPNI-KIIRKTVPGIKDLPVACKKLL----EEEGC 58

Query: 67  DGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH 126
           D ++ LG+   GK     V AH  + GL+   +  +  I    V  D  +     +    
Sbjct: 59  DIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNKHIIEVFVHEDEAKDD-KELDWLA 115

Query: 127 LDRGGCAARSALAMIELKKSLSE 149
             R    A +   ++   + L+ 
Sbjct: 116 KRRAEEHAENVYYLLFKPEYLTR 138


>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
           subunit); electron transport(flavocytochrome); HET: FAD
           HEM; 2.53A {Allochromatium vinosum} (A:105-281)
          Length = 177

 Score = 25.1 bits (54), Expect = 4.0
 Identities = 11/61 (18%), Positives = 18/61 (29%)

Query: 53  VSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVV 112
           +       +  V  DG  ++     G     DVI     +    ++    L    G   V
Sbjct: 113 IEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPV 172

Query: 113 D 113
           D
Sbjct: 173 D 173


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.322    0.135    0.389 

Gapped
Lambda     K      H
   0.267   0.0550    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,093,131
Number of extensions: 43747
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 15
Length of query: 149
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 68
Effective length of database: 2,217,844
Effective search space: 150813392
Effective search space used: 150813392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)