RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit beta [Candidatus Liberibacter asiaticus str. psy62] (149 letters) >2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A* (A:) Length = 157 Score = 125 bits (315), Expect = 3e-30 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIP-AAVSMVMNAKTRSVT 65 H+LI+EARFY++L+ L +G L + + PG LEIP + A Sbjct: 14 HLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTE 73 Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125 YDG + LG V+RG+T H D++++ R L DLS+ S+ IGNGI+ V++E+QA+ Sbjct: 74 YDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARRE 133 Query: 126 HLDRGGCAARSALAMIELKKSL 147 D+GG AAR+AL MI L+K Sbjct: 134 DKDKGGFAARAALTMIGLRKKF 155 >1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} (A:) Length = 154 Score = 118 bits (298), Expect = 3e-28 Identities = 42/144 (29%), Positives = 67/144 (46%), Gaps = 7/144 (4%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63 + I+ RF + +++ L G + L V + I PG EIP A + K Sbjct: 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKK-- 71 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 YD II LG V+RG T H D + + +G+ + +P+ GIV ++ +QA +R Sbjct: 72 --YDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAG 129 Query: 124 PSHLDRGGCAARSALAMIELKKSL 147 ++G A SA+ M L +S Sbjct: 130 TKAGNKGVDCAVSAIEMANLNRSF 153 >1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} (A:) Length = 154 Score = 117 bits (296), Expect = 4e-28 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63 I+ +RF L L EG ++ + + I PG EIP A + R Sbjct: 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA----RK 69 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 D +I +GV++RG T H D IA V++GL +LS+ PI G++ D+ +QA +R Sbjct: 70 EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAG 129 Query: 124 PSHLDRGGCAARSALAMIELKKSL 147 H ++G AA SA+ M L KSL Sbjct: 130 TKHGNKGWEAALSAIEMANLFKSL 153 >1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} (A:) Length = 168 Score = 117 bits (295), Expect = 6e-28 Identities = 35/150 (23%), Positives = 65/150 (43%), Gaps = 8/150 (5%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIP-AAVSMVMNAKTR 62 V II AR+ + L +G + + S V+ ++I+ PG E+P V Sbjct: 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77 Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 D +I +GV+++G T H + I+ + T L++L +P+ G++ +E+QA R Sbjct: 78 GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137 Query: 123 SPSH----LDRGGCAARSALAMIELKKSLS 148 + G +A+ M + Sbjct: 138 GIDEAHSMHNHGEDWGAAAVEMAVKFGKNA 167 >1c2y_A Protein (lumazine synthase); riboflavin biosynthesis; HET: LMZ; 3.30A {Spinacia oleracea} (A:) Length = 156 Score = 117 bits (294), Expect = 9e-28 Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 6/145 (4%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIV--TPGVLEIPAAVSMVMNAKTRSV 64 I+ ARF E ++ L EG ++ +V V PG E+ + +S Sbjct: 15 RFAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALG----KSG 70 Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124 Y I+ LG V++G T+H D + ++ + G++ +N +P G++ D+ QA +R Sbjct: 71 KYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGG 130 Query: 125 SHLDRGGCAARSALAMIELKKSLSE 149 ++G +A +A+ M L + + Sbjct: 131 KAGNKGAESALTAIEMASLFEHHLK 155 >2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A* (A:) Length = 160 Score = 116 bits (293), Expect = 9e-28 Identities = 44/146 (30%), Positives = 76/146 (52%), Gaps = 9/146 (6%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT-PGVLEIPAAVSMVMNAKTRSVT 65 + I+ + ++ + L +G V + ++V G +EIP A+ + Sbjct: 19 RLAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRVLGAIEIPVV------AQELARN 72 Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VS 123 +D ++ LGVV+RG+T H D + AVT+GL +S++ S PI NG++ ++E+QA DR + Sbjct: 73 HDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLP 132 Query: 124 PSHLDRGGCAARSALAMIELKKSLSE 149 S D+G A +ALA + L Sbjct: 133 TSAEDKGAQATVAALATALTLRELRA 158 >1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} (A:) Length = 158 Score = 116 bits (292), Expect = 1e-27 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63 + I+AR++ ++ + V L ++ + PG EIP + R+ Sbjct: 12 KIAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLA----RT 67 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 Y I+ V+ G D +A AV G++ + + +P+ + ++ ++ + Sbjct: 68 GRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHD 127 Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148 H +G AA +AL ++ + ++ Sbjct: 128 FFHAHFKVKGVEAAHAALQIVSERSRIA 155 >2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti} (A:) Length = 157 Score = 115 bits (290), Expect = 2e-27 Identities = 19/148 (12%), Positives = 59/148 (39%), Gaps = 10/148 (6%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63 + ++ AR++ ++ + ++ PG EIP + + Sbjct: 13 RIAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLA----ET 68 Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123 Y ++ V+ G + +A AV G++++ ++ +P+ + ++ + + + Sbjct: 69 GRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHR 128 Query: 124 PSH---LDRGGCAARSALAMIELKKSLS 148 +G AAR+ + ++ ++ ++ Sbjct: 129 FFFEHFTVKGKEAARACVEILAAREKIA 156 >1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} (A:) Length = 159 Score = 114 bits (287), Expect = 5e-27 Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSR-AVQWSSIVT---PGVLEIPAAVSMVMNAKTR 62 +LI+ AR L +G V + + V+ +I PG E+P + + Sbjct: 19 RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI----A 74 Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122 TYD +I +GV+++G T H + I+ AV GL+ + ++ +P+ G++ V +E+QA R Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134 Query: 123 SPSH-LDRGGCAARSALAMIELKK 145 + + G +A+ M Sbjct: 135 GLNGGHNHGNDWGSAAVEMGLKAL 158 >1c41_A Lumazine synthase; riboflavin biosynthesis; HET: LMZ; 3.10A {Magnaporthe grisea} (A:) Length = 200 Score = 113 bits (285), Expect = 8e-27 Identities = 38/180 (21%), Positives = 75/180 (41%), Gaps = 37/180 (20%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVM------ 57 + I+ AR+ E + L G L + V+ S+IV PG E+P AV + Sbjct: 17 RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76 Query: 58 --------------------------NAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVT 91 + + +D +I +GV+++G+T H + IA +V+ Sbjct: 77 TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136 Query: 92 RGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH--LDRGGCAARSALAMIELKKSLSE 149 GL+ + ++ +P+ G++ V ++ QA R + G +A+ M ++ + Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVRRRDWAA 196 >2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A* (A:) Length = 156 Score = 101 bits (254), Expect = 4e-23 Identities = 25/143 (17%), Positives = 49/143 (34%), Gaps = 8/143 (5%) Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTY 66 V I++ F A + + L + PG+ ++P A ++ Sbjct: 4 KVGIVDTTFARVDMASIAIKKLKELSPNI-KIIRKTVPGIKDLPVACKKLL----EEEGC 58 Query: 67 DGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSH 126 D ++ LG+ GK V AH + GL+ + + I V D + + Sbjct: 59 DIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNKHIIEVFVHEDEAKDD-KELDWLA 115 Query: 127 LDRGGCAARSALAMIELKKSLSE 149 R A + ++ + L+ Sbjct: 116 KRRAEEHAENVYYLLFKPEYLTR 138 >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} (A:105-281) Length = 177 Score = 25.1 bits (54), Expect = 4.0 Identities = 11/61 (18%), Positives = 18/61 (29%) Query: 53 VSMVMNAKTRSVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVV 112 + + V DG ++ G DVI + ++ L G V Sbjct: 113 IEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLIPPQRAGKIAQIAGLTNDAGWCPV 172 Query: 113 D 113 D Sbjct: 173 D 173 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.322 0.135 0.389 Gapped Lambda K H 0.267 0.0550 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,093,131 Number of extensions: 43747 Number of successful extensions: 102 Number of sequences better than 10.0: 1 Number of HSP's gapped: 82 Number of HSP's successfully gapped: 15 Length of query: 149 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 68 Effective length of database: 2,217,844 Effective search space: 150813392 Effective search space used: 150813392 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 50 (23.4 bits)