RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780346|ref|YP_003064759.1| riboflavin synthase subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
(149 letters)
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin
biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces
cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Length = 168
Score = 122 bits (307), Expect = 4e-29
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVS-MVMNAKTR 62
V II AR+ + L +G + + S V+ ++I+ PG E+P V
Sbjct: 18 RVGIIHARWNRVIIDALVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKL 77
Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
D +I +GV+++G T H + I+ + T L++L +P+ G++ +E+QA R
Sbjct: 78 GKPLDVVIPIGVLIKGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137
Query: 123 SPSH----LDRGGCAARSALAMIELKK 145
+ G +A+ M
Sbjct: 138 GIDEAHSMHNHGEDWGAAAVEMAVKFG 164
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysis, enzyme
stability, vitamin biosynthesis, transferase; 1.60A
{Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A*
1nqw_A* 1nqx_A*
Length = 154
Score = 119 bits (301), Expect = 2e-28
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 7/144 (4%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT---PGVLEIPAAVSMVMNAKTRS 63
I+ +RF L L EG ++ + + I PG EIP A + R
Sbjct: 14 RFGIVASRFNHALVDRLVEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELA----RK 69
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
D +I +GV++RG T H D IA V++GL +LS+ PI G++ D+ +QA +R
Sbjct: 70 EDIDAVIAIGVLIRGATPHFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERAG 129
Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
H ++G AA SA+ M L KSL
Sbjct: 130 TKHGNKGWEAALSAIEMANLFKSL 153
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1,
transferase; 2.22A {Brucella abortus} PDB: 2f59_A
2o6h_A*
Length = 157
Score = 113 bits (283), Expect = 2e-26
Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 6 PHVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVS-MVMNAKTRSV 64
PH+LI+EARFY++L+ L +G L + + PG LEIPA +S + A
Sbjct: 13 PHLLIVEARFYDDLADALLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGT 72
Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
YDG + LG V+RG+T H D++++ R L DLS+ S+ IGNGI+ V++E+QA+
Sbjct: 73 EYDGFVALGTVIRGETYHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHARR 132
Query: 125 SHLDRGGCAARSALAMIELKKSL 147
D+GG AAR+AL MI L+K
Sbjct: 133 EDKDKGGFAARAALTMIGLRKKF 155
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis,
ligand binding, transferase; 2.00A {Schizosaccharomyces
pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A*
1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Length = 159
Score = 110 bits (277), Expect = 1e-25
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVT----PGVLEIPAAVSMVMNAKTR 62
+LI+ AR L +G V + + + PG E+P + +
Sbjct: 19 RILIVHARGNLQAIEPLVKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASI----A 74
Query: 63 SVTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRV 122
TYD +I +GV+++G T H + I+ AV GL+ + ++ +P+ G++ V +E+QA R
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134
Query: 123 SPSH-LDRGGCAARSALAM 140
+ + G +A+ M
Sbjct: 135 GLNGGHNHGNDWGSAAVEM 153
>1c41_A Lumazine synthase; riboflavin biosynthesis; HET: LMZ; 3.10A
{Magnaporthe grisea} SCOP: c.16.1.1
Length = 200
Score = 102 bits (256), Expect = 2e-23
Identities = 37/180 (20%), Positives = 73/180 (40%), Gaps = 37/180 (20%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAK--- 60
+ I+ AR+ E + L G L + V PG E+P AV + +A
Sbjct: 17 RIGIVHARWNETIIEPLLAGTKAKLLACGVKESNIVVQSVPGSWELPIAVQRLYSASQLQ 76
Query: 61 -----------------------------TRSVTYDGIIVLGVVMRGKTAHCDVIAHAVT 91
+ + +D +I +GV+++G+T H + IA +V+
Sbjct: 77 TPSSGPSLSAGDLLGSSTTDLTALPTTTASSTGPFDALIAIGVLIKGETMHFEYIADSVS 136
Query: 92 RGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VSPSHLDRGGCAARSALAMIELKKSLSE 149
GL+ + ++ +P+ G++ V ++ QA R V + G +A+ M ++ +
Sbjct: 137 HGLMRVQLDTGVPVIFGVLTVLTDDQAKARAGVIEGSHNHGEDWGLAAVEMGVRRRDWAA 196
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A
{Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A*
Length = 154
Score = 102 bits (256), Expect = 3e-23
Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 7/144 (4%)
Query: 7 HVLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAKTRS 63
+ I+ RF + +++ L G + L V PG EIP A + +
Sbjct: 14 KIGIVVGRFNDFITSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMA----ET 69
Query: 64 VTYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVS 123
YD II LG V+RG T H D + + +G+ + +P+ GIV ++ +QA +R
Sbjct: 70 KKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERAG 129
Query: 124 PSHLDRGGCAARSALAMIELKKSL 147
++G A SA+ M L +S
Sbjct: 130 TKAGNKGVDCAVSAIEMANLNRSF 153
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1,
riboflavin; alpha-beta, transferase; HET: INI; 2.53A
{Mesorhizobium loti}
Length = 157
Score = 97.3 bits (242), Expect = 1e-21
Identities = 19/147 (12%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAV---QWSSIVTPGVLEIPAAVSMVMNAKTRSV 64
+ ++ AR++ ++ + PG EIP + +
Sbjct: 14 IAVVRARWHADIVDQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLA----ETG 69
Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
Y ++ V+ G + +A AV G++++ ++ +P+ + ++ + + +
Sbjct: 70 RYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLSTGVPVLSAVLTPHNYHDSAEHHRF 129
Query: 125 SH---LDRGGCAARSALAMIELKKSLS 148
+G AAR+ + ++ ++ ++
Sbjct: 130 FFEHFTVKGKEAARACVEILAAREKIA 156
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis; HET: LMZ;
3.30A {Spinacia oleracea} SCOP: c.16.1.1
Length = 156
Score = 95.8 bits (238), Expect = 4e-21
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 6/140 (4%)
Query: 8 VLIIEARFYENLSAMLFEGCVNVL--HSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVT 65
I+ ARF E ++ L EG ++ +S + PG E+ + +
Sbjct: 16 FAIVVARFNEFVTRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGK---- 71
Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125
Y I+ LG V++G T+H D + ++ + G++ +N +P G++ D+ QA +R
Sbjct: 72 YHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGK 131
Query: 126 HLDRGGCAARSALAMIELKK 145
++G +A +A+ M L +
Sbjct: 132 AGNKGAESALTAIEMASLFE 151
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP:
c.16.1.1 PDB: 1t13_A* 1xn1_A
Length = 158
Score = 94.7 bits (235), Expect = 7e-21
Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 10/148 (6%)
Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSI---VTPGVLEIPAAVSMVMNAKTRSV 64
+ I+AR++ ++ + V L ++ + PG EIP + R+
Sbjct: 13 IAFIQARWHADIVDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLA----RTG 68
Query: 65 TYDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSP 124
Y I+ V+ G D +A AV G++ + + +P+ + ++ ++ +
Sbjct: 69 RYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLETEVPVLSVVLTPHHFHESKEHHDF 128
Query: 125 SH---LDRGGCAARSALAMIELKKSLSE 149
H +G AA +AL ++ + ++
Sbjct: 129 FHAHFKVKGVEAAHAALQIVSERSRIAA 156
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin
biosynthesis, inhibitor binding; HET: TP6; 1.6A
{Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A*
2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Length = 160
Score = 93.1 bits (231), Expect = 2e-20
Identities = 41/142 (28%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 8 VLIIEARFYENLSAMLFEGCVNVLHSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVTYD 67
+ I+ + ++ + L +G V + ++V A+ + + A+ + +D
Sbjct: 20 LAIVASSWHGKICDALLDGARKVAAGCGLDDPTVVRV-----LGAIEIPVVAQELARNHD 74
Query: 68 GIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDR--VSPS 125
++ LGVV+RG+T H D + AVT+GL +S++ S PI NG++ ++E+QA DR + S
Sbjct: 75 AVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRAGLPTS 134
Query: 126 HLDRGGCAARSALAMIELKKSL 147
D+G A +ALA + L
Sbjct: 135 AEDKGAQATVAALATALTLREL 156
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL;
2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Length = 156
Score = 86.8 bits (215), Expect = 2e-18
Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 12/144 (8%)
Query: 8 VLIIEARFYENLSAMLFEGCVNVL--HSRAVQWSSIVTPGVLEIPAAVSMVMNAKTRSVT 65
V I++ F + + L S ++ PG+ ++P A ++
Sbjct: 5 VGIVDTTFARV---DMASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLL----EEEG 57
Query: 66 YDGIIVLGVVMRGKTAHCDVIAHAVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPS 125
D ++ LG+ GK V AH + GL+ + + I V D E + +
Sbjct: 58 CDIVMALGMP--GKAEKDKVCAHEASLGLMLAQLMTNKHIIEVFVHED-EAKDDKELDWL 114
Query: 126 HLDRGGCAARSALAMIELKKSLSE 149
R A + ++ + L+
Sbjct: 115 AKRRAEEHAENVYYLLFKPEYLTR 138
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.075
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 11/38 (28%)
Query: 115 EQQAFDRVSPS---HLDRGGCAARSALAMIELKKSLSE 149
E+QA ++ S + D +A ALA +K ++ E
Sbjct: 18 EKQALKKLQASLKLYADD---SA-PALA---IKATM-E 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 2006
Score = 29.1 bits (65), Expect = 0.46
Identities = 39/163 (23%), Positives = 54/163 (33%), Gaps = 56/163 (34%)
Query: 14 RFYENLSAMLFEGCVN-------VL-----HSRAVQWSSIVTPGVLEI-----PAAVSMV 56
R EN SAM+FE V+ + HS + + S G+L PA M
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRS--EKGLLSATQFTQPALTLME 1740
Query: 57 MNA----KTRSVT-------------YDGIIVLGVVM-----------RGKTAHCDVIAH 88
A K++ + Y + L VM RG T
Sbjct: 1741 KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQV----- 1795
Query: 89 AVTRGLVDLSINGSLPIGNGIVVVDSEQQAFDRVSPSHLDRGG 131
AV R + S G + I G V Q+A V ++R G
Sbjct: 1796 AVPRDELGRSNYGMIAINPGRVAASFSQEALQYV----VERVG 1834
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.135 0.389
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,240,683
Number of extensions: 51283
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 14
Length of query: 149
Length of database: 5,693,230
Length adjustment: 84
Effective length of query: 65
Effective length of database: 3,656,734
Effective search space: 237687710
Effective search space used: 237687710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)