HHsearch alignment for GI: 254780347 and conserved domain: pfam00677

>pfam00677 Lum_binding Lumazine binding domain. This domain binds to derivatives of lumazine in some proteins. Some proteins have lost the residues involved in binding lumazine.

Probab=99.89  E-value=3.4e-23  Score=156.22  Aligned_cols=83  Identities=30%  Similarity=0.388  Sum_probs=75.4

Q ss_pred             CEEEEEEEEEEEEEECCCCEEEEEEECCC-CCC-CCCCCEEEECCEEEEEEEECCCCCCCCEEEEEEEHHHHHHCCCCCC
Q ss_conf             53371189999998769935999981755-112-6677246533315423650455566867999986565532013555
Q gi|254780347|r    3 TGIVTDIGKIIAMTPIAKGMRLRVMTSYN-TSK-MKLGCSIAHAGICLTVVRLSEEHSVDNWYEVEVWAETNRITNIASW   80 (204)
Q Consensus         3 tGIV~~~G~V~~i~~~~~~~~l~i~~~~~-~~~-l~~G~SIavnGvCLTV~~i~~~~~~~~~f~~~~~~ETl~~T~l~~l   80 (204)
T Consensus         1 TGiV~~~g~V~~i~~~~~~~~~~i~~~~~~~~~~~~~~~SIavnGvcLTV~~~~-----~~~~~~~ii~eTl~~T~l~~~   75 (86)
T pfam00677         1 TGIVEGVGEIAEIIENGNARSIWIKLPDKMLTKVLIGKDSIAVNGISLTVTEVT-----GNQFTFDLIPETLKRTNLGSL   75 (86)
T ss_pred             CCCEEEEEEEEEEEECCCCEEEEEEECCHHHHHCCCCCCEEEECCEEEEEEEEC-----CCEEEEEEEHHHHHHCCCCCC
T ss_conf             968828999999999799699999938178542023688799855899999987-----999999998999843835348


Q ss_pred             CCCCCCCCCC
Q ss_conf             6566313354
Q gi|254780347|r   81 GIGTFINLER   90 (204)
Q Consensus        81 ~~G~~VNLE~   90 (204)
T Consensus        76 k~G~~VNlE~   85 (86)
T pfam00677        76 KVGDKVNLEI   85 (86)
T ss_pred             CCCCEEEEEE
T ss_conf             7799999658