RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(204 letters)
>gnl|CDD|181760 PRK09289, PRK09289, riboflavin synthase subunit alpha; Provisional.
Length = 194
Score = 254 bits (652), Expect = 1e-68
Identities = 87/197 (44%), Positives = 126/197 (63%), Gaps = 5/197 (2%)
Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVD 60
MFTGIV ++G + ++ P G+RL + S +KLG SIA G+CLTV +
Sbjct: 1 MFTGIVEEVGTVESIEPKGDGLRLTIEAGKLLSDLKLGDSIAVNGVCLTVTEID-----G 55
Query: 61 NWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIG 120
+ + V+V ET R TN+ +G +NLER+++LGDRL GH+VSGH+DGT EI+ ++ G
Sbjct: 56 DSFTVDVSPETLRRTNLGDLKVGDRVNLERALRLGDRLGGHIVSGHVDGTGEIVSIEKEG 115
Query: 121 DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG 180
+S+ R P L ++I KGS+ ++GVSLTVN V + F V LI HT+E TT KVG
Sbjct: 116 NSVEFRFKAPAELAKYIVEKGSIAVDGVSLTVNEVDGDRFSVNLIPHTLENTTLGEKKVG 175
Query: 181 DLINIEVDSMMRYIARL 197
D +N+E+D + +Y+ RL
Sbjct: 176 DRVNLEIDLLAKYVERL 192
>gnl|CDD|183846 PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.
Length = 206
Score = 155 bits (395), Expect = 5e-39
Identities = 66/195 (33%), Positives = 106/195 (54%), Gaps = 6/195 (3%)
Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59
MFTGIV +++A+ L + +++G S+A G+CLTV ++
Sbjct: 1 MFTGIVQATAEVVAIHKKDGLNTLEIAFPPELLEGLEIGASVAVNGVCLTVTKIE----- 55
Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119
+ +V ET R+TN+A +G +N+ERS K G + GH++SGH+D T ++ +
Sbjct: 56 GDRVFFDVMEETLRLTNLADLRVGDRVNIERSAKFGAEIGGHILSGHVDTTATVVEISDT 115
Query: 120 GDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKV 179
++ R +P ++I KG + +NG SLTV V ++ F+V LI T+ T KV
Sbjct: 116 EENYDIRFRVPPEWMKYIFAKGFIGVNGCSLTVGEVDESEFEVHLIPETLRATNLGAKKV 175
Query: 180 GDLINIEVDSMMRYI 194
GDL+NIE+DS + I
Sbjct: 176 GDLVNIEIDSQTQVI 190
>gnl|CDD|161753 TIGR00187, ribE, riboflavin synthase, alpha subunit. The name ribE
was selected, from among alternatives including ribB and
ribC, to match the usage in EcoCyc.
Length = 200
Score = 152 bits (386), Expect = 5e-38
Identities = 68/198 (34%), Positives = 115/198 (58%), Gaps = 7/198 (3%)
Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSK-MKLGCSIAHAGICLTVVRLSEEHSV 59
MFTGI+ K++++ + L V + + ++LG SIA G+CLTV +++ H
Sbjct: 1 MFTGIIQGTAKLVSIKEKPLFISLVVNLADHMLDDLELGDSIAVNGVCLTVTEINKNH-- 58
Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119
+ V++ ET + TN+ +GT++N+ER++K + GH VSGHID T EI ++
Sbjct: 59 ---FSVDLSPETLKRTNLGDLKVGTWVNIERALKADGEIGGHFVSGHIDTTAEIAKIETS 115
Query: 120 GDSMYCRLSLP-HNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHK 178
+++ L L ++I KGS+ ++G+SLT+ V + F V LI HT+E T + K
Sbjct: 116 ENNVQFWFKLQDSELMKYIVEKGSIAVDGISLTIGKVTETRFCVSLIPHTLENTILGLKK 175
Query: 179 VGDLINIEVDSMMRYIAR 196
+GD +NIE+D + + +A
Sbjct: 176 LGDRVNIEIDMLGKAVAD 193
>gnl|CDD|178342 PLN02741, PLN02741, riboflavin synthase.
Length = 194
Score = 133 bits (337), Expect = 3e-32
Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 10/200 (5%)
Query: 1 MFTGIVTDIGKIIAMTPI-AKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRL-SEEHS 58
+FTGIV ++G++ ++ G L++ S +KLG SIA G CLTV +E +
Sbjct: 1 LFTGIVEEMGEVKSLGVTDDGGFDLKIEASTVLDGVKLGDSIAVNGTCLTVTEFDGDEFT 60
Query: 59 VDNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDF 118
V + ET R T++ G+ +NLER+++ G R+ GH V GH+DGT I+ +
Sbjct: 61 VG------LAPETLRKTSLGELKTGSLVNLERALRPGSRMGGHFVQGHVDGTGTIVEQEP 114
Query: 119 IGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGK--NFFDVLLIRHTIEETTWKM 176
GDS++ ++ L ++I KG + ++G SLTV V F+ +L+ +T ++ +
Sbjct: 115 EGDSLWVKVKADPELLKYIVPKGFIAVDGTSLTVVDVDDEEGCFNFMLVPYTQQKVVIPL 174
Query: 177 HKVGDLINIEVDSMMRYIAR 196
KVGD +N+EVD + +Y+ R
Sbjct: 175 KKVGDKVNLEVDILGKYVER 194
>gnl|CDD|140302 PTZ00276, PTZ00276, biotin/lipoate protein ligase; Provisional.
Length = 245
Score = 26.8 bits (59), Expect = 3.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 100 GHLVSGHIDGTVEILFLDFI 119
GHL+ DGT E L +++
Sbjct: 225 GHLIVRRPDGTEEDLMAEYL 244
>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein
contains two 4Fe-4S cluster binding domains (pfam00037)
and scores above the trusted cutoff to model pfam01058
for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
family.
Length = 228
Score = 26.0 bits (57), Expect = 6.8
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 100 GHLVSGHIDGTVEILF--LDFIGDSMYCR--LSLPHNLEQFIA-VKGSVCLN 146
G LVS + E L LD I D +YC+ E +A V+GSVCL
Sbjct: 14 GCLVS--LTDNYEGLLDILDNIADLVYCQTLADAREIPEMDVALVEGSVCLQ 63
>gnl|CDD|180094 PRK05454, PRK05454, glucosyltransferase MdoH; Provisional.
Length = 696
Score = 26.1 bits (58), Expect = 7.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 15 MTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLT 49
+ PI G+ L + S TS+ LG ++ G+ L
Sbjct: 572 LAPILLGLILAIPLSVLTSRASLGLALRRRGLFLI 606
>gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 25.9 bits (58), Expect = 7.6
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 4/18 (22%)
Query: 190 MMRYIARL----YALNTS 203
MMRY+ RL AL+ S
Sbjct: 483 MMRYLRRLEDKDLALDRS 500
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 25.8 bits (56), Expect = 8.9
Identities = 15/62 (24%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 133 LEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMR 192
++Q+I+ K ++ L+ ++ N NF + I I K ++ ++ N E +++M+
Sbjct: 2328 IDQYISDKKNIFLHALNENTNF---NFNALKEIYDDIINRENKADEIENINNKENENIMQ 2384
Query: 193 YI 194
YI
Sbjct: 2385 YI 2386
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.138 0.416
Gapped
Lambda K H
0.267 0.0618 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,253,420
Number of extensions: 197472
Number of successful extensions: 425
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 12
Length of query: 204
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,071,361
Effective search space: 468206515
Effective search space used: 468206515
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.2 bits)