RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >3ddy_A Lumazine protein, LUMP; luminescent bacteria, riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi} Length = 186 Score = 188 bits (479), Expect = 7e-49 Identities = 35/188 (18%), Positives = 73/188 (38%), Gaps = 7/188 (3%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSK-MKLGCSIAHAGICLTVVRLSEEHSV 59 MF GIV G I +++ R + + + + + G TVVR+ Sbjct: 1 MFRGIVQGRGVIRSISKSEDSQRHGIAFPEGMFQLVDVDTVMLVNGCSNTVVRIL----- 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 + ++ + T G +NLE K G+ + ++G+I GT + ++ Sbjct: 56 GDMVYFDI-DQALGTTTFDGLKEGDQVNLEIHPKFGEVVGRGGLTGNIKGTALVAAIEEN 114 Query: 120 GDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKV 179 + +P L + + VK + ++G+SL + + + + R + T Sbjct: 115 DAGFSVLIDIPKGLAENLTVKDDIGIDGISLPITDMSDSIITLNYSRDLLASTNIASLAK 174 Query: 180 GDLINIEV 187 +N+E+ Sbjct: 175 DVKVNVEI 182 >1kzl_A Riboflavin synthase; biosynthesis of riboflavin, ligand binding, transferase; HET: CRM; 2.10A {Schizosaccharomyces pombe} SCOP: b.43.4.3 b.43.4.3 Length = 208 Score = 175 bits (444), Expect = 8e-45 Identities = 61/199 (30%), Positives = 96/199 (48%), Gaps = 7/199 (3%) Query: 1 MFTGIVTDIGKIIAMTP-IAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MFTG+V IG + + I G +++ G SIA G CLTV Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVT-----DFD 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 + V + E+ R+TN+ G +NLER+V R+ GH V GH+D EI+ Sbjct: 56 RYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQD 115 Query: 120 GDSMYCRLSLPHNLE-QFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHK 178 G+++ ++I KG + L+G SLT+ V + F +++I +T + Sbjct: 116 GEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKN 175 Query: 179 VGDLINIEVDSMMRYIARL 197 VGDL+N+EVD + +Y +L Sbjct: 176 VGDLVNVEVDQIGKYTEKL 194 >1i8d_A Riboflavin synthase; riboflavin biosynthesis, antimicrobial target, structure-based design, transferase; 2.00A {Escherichia coli} SCOP: b.43.4.3 b.43.4.3 PDB: 1hze_A* 1i18_A* 1pkv_A* Length = 213 Score = 171 bits (435), Expect = 9e-44 Identities = 63/199 (31%), Positives = 99/199 (49%), Gaps = 7/199 (3%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MFTGIV K++++ V + + ++ G S+AH G CLTV + Sbjct: 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEI-----N 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 N ++ ET RITN+ +G ++N+ER+ K D + GHL+SGHI T E+ + Sbjct: 56 GNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTS 115 Query: 120 GDS-MYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHK 178 ++ L ++I KG + ++G+SLTV V F V LI T+E TT K Sbjct: 116 ENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKK 175 Query: 179 VGDLINIEVDSMMRYIARL 197 +G +NIE+D + + Sbjct: 176 LGARVNIEIDPQTQAVVDT 194 >3a35_A Lumazine protein, LUMP; luminous bacteria, homologue of riboflavin synthase, luminescent protein; HET: RBF; 1.42A {Photobacterium kishitanii} PDB: 3a3b_B* 3a3g_A* Length = 190 Score = 119 bits (299), Expect = 4e-28 Identities = 35/192 (18%), Positives = 72/192 (37%), Gaps = 7/192 (3%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYN-TSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MF GIV G I ++ R + + ++ G + G LTV + Sbjct: 1 MFKGIVQGAGIIKKISKNDDTQRHGITFPKDILESVEKGTVMLVNGCSLTV------VRI 54 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFI 119 + T +G +NLE + G L ++G+I G + + Sbjct: 55 SGDVVYFDIDQAINTTTFRELEVGNKVNLEVRPEFGSLLGKGALTGNIKGVATVDNITEE 114 Query: 120 GDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKV 179 D + + +P +L + I + + +NGVS ++ + + + ++ T + Sbjct: 115 EDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEISDDIIFINYPKNLSITTNLGTLEK 174 Query: 180 GDLINIEVDSMM 191 G +N+E ++ Sbjct: 175 GSDVNVETLNVS 186 Score = 32.5 bits (73), Expect = 0.072 Identities = 12/96 (12%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 TG + + + +T +++ + + + I G+ ++ +S Sbjct: 97 ALTGNIKGVATVDNITEEEDRLKVYIKIPKDLIENILSEDHIGINGVSHSIEEIS----- 151 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLG 95 D+ + + TN+ + G+ +N+E Sbjct: 152 DDIIFINYPKNLSITTNLGTLEKGSDVNVETLNVSN 187 >2rjg_A Alanine racemase; alpha/beta barrel, cell shape, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis, pyridoxal phosphate; HET: KCX PLP; 2.40A {Escherichia coli} PDB: 2rjh_A* 3b8v_A* 3b8u_A* 3b8t_A* 3b8w_A* Length = 379 Score = 25.6 bits (55), Expect = 9.1 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 2/51 (3%) Query: 48 LTVVRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRL 98 + V L + V +W E + IA E +L R+ Sbjct: 325 MICVDLGPQAQDKAGDPVILWGEGLPVERIAEM-TKV-SAYELITRLTSRV 373 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.138 0.416 Gapped Lambda K H 0.267 0.0649 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,784,107 Number of extensions: 79323 Number of successful extensions: 326 Number of sequences better than 10.0: 1 Number of HSP's gapped: 304 Number of HSP's successfully gapped: 8 Length of query: 204 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 116 Effective length of database: 3,559,758 Effective search space: 412931928 Effective search space used: 412931928 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 54 (24.7 bits)