RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter asiaticus str. psy62] (204 letters) >d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 110 Score = 92.7 bits (230), Expect = 2e-20 Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%) Query: 97 RLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHN-LEQFIAVKGSVCLNGVSLTVNLV 155 R+ GH V GH+D EI+ G+++ + ++I KG + L+G SLT+ V Sbjct: 1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV 60 Query: 156 GKNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMRYIARL 197 + F +++I +T + VGDL+N+EVD + +Y +L Sbjct: 61 DDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKL 102 Score = 41.1 bits (96), Expect = 6e-05 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 7/89 (7%) Query: 3 TGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSK--MKLGCSIAHAGICLTVVRLSEEHSVD 60 G V + +I+ + + + IA G LT+ + D Sbjct: 8 QGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----D 62 Query: 61 NWYEVEVWAETNRITNIASWGIGTFINLE 89 + + + + + T +A +G +N+E Sbjct: 63 STFSIMMISYTQSKVIMAKKNVGDLVNVE 91 >d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 113 Score = 87.0 bits (215), Expect = 1e-18 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 1/100 (1%) Query: 98 LDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVG 156 + GHL+SGHI T E+ + ++ + L ++I KG + ++G+SLTV V Sbjct: 1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT 60 Query: 157 KNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMRYIAR 196 F V LI T+E TT K+G +NIE+D + + Sbjct: 61 PTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVD 100 Score = 44.6 bits (105), Expect = 6e-06 Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%) Query: 1 MFTGIVTDIGKIIAMTPIAK--GMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHS 58 + +G + ++ + + +V S + I GI LTV ++ Sbjct: 5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT---- 60 Query: 59 VDNWYEVEVWAETNRITNIASWGIGTFINLE 89 + V + ET T + +G +N+E Sbjct: 61 -PTRFCVHLIPETLERTTLGKKKLGARVNIE 90 >d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli [TaxId: 562]} Length = 93 Score = 81.9 bits (202), Expect = 3e-17 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%) Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MFTGIV K++++ V + + ++ G S+AH G CLTV Sbjct: 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTV-----TEIN 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGD 96 N ++ ET RITN+ +G ++N+ER+ K D Sbjct: 56 GNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSD 92 Score = 70.7 bits (173), Expect = 8e-14 Identities = 23/84 (27%), Positives = 40/84 (47%) Query: 103 VSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDV 162 +G + GT +++ +D + + LP ++ + SV NG LTV + N Sbjct: 2 FTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSF 61 Query: 163 LLIRHTIEETTWKMHKVGDLINIE 186 L++ T+ T KVGD +N+E Sbjct: 62 DLMKETLRITNLGDLKVGDWVNVE 85 >d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 92 Score = 72.7 bits (178), Expect = 2e-14 Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 1 MFTGIVTDIGKIIAMTPIAK-GMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59 MFTG+V IG + + G +++ G SIA G CLTV Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVT-----DFD 55 Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKL 94 + V + E+ R+TN+ G +NLER+V Sbjct: 56 RYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLS 90 Score = 58.4 bits (141), Expect = 4e-10 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%) Query: 104 SGHIDGTVEILFLDFIGD-SMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDV 162 +G ++ + + D ++ P L+ S+ +NG LTV + F V Sbjct: 3 TGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDD-CHTGDSIAVNGTCLTVTDFDRYHFTV 61 Query: 163 LLIRHTIEETTWKMHKVGDLINIEVD 188 + ++ T K GD +N+E Sbjct: 62 GIAPESLRLTNLGQCKAGDPVNLERA 87 >d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 81 Score = 30.1 bits (68), Expect = 0.15 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%) Query: 123 MYCRLSLPHNLEQFIAV----KGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTW 174 M+C++SL + V KG L V +NL+ +++F L I TW Sbjct: 1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFG-LAIWDNATSKTW 55 >d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Score = 24.8 bits (53), Expect = 5.6 Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 51 VRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTFINLER 90 VR + E +D E+ + N +G TF++LE Sbjct: 96 VRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEA 135 >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} Length = 289 Score = 24.6 bits (53), Expect = 6.4 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Query: 10 GKII-AMTPIAKGMRLRVMTSYNTSKMKLGCSIAHA----------GICLTVVRLSEEHS 58 +++ +PI +G R ++ K L +IA + + L R E Sbjct: 31 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 90 Query: 59 VDNWYEVEVWAETN 72 + + EV A T Sbjct: 91 MQRLVKGEVVASTF 104 >d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Score = 24.1 bits (52), Expect = 8.5 Identities = 6/30 (20%), Positives = 11/30 (36%) Query: 146 NGVSLTVNLVGKNFFDVLLIRHTIEETTWK 175 V LT+ F + + ++I W Sbjct: 112 KDVPLTIKDPAVGFLETISPGYSIHTYLWH 141 >d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]} Length = 77 Score = 24.2 bits (52), Expect = 8.8 Identities = 5/19 (26%), Positives = 12/19 (63%) Query: 180 GDLINIEVDSMMRYIARLY 198 GDL + ++++R++ R Sbjct: 58 GDLTLYQSNTILRHLGRTL 76 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.138 0.416 Gapped Lambda K H 0.267 0.0602 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 778,022 Number of extensions: 34991 Number of successful extensions: 139 Number of sequences better than 10.0: 1 Number of HSP's gapped: 133 Number of HSP's successfully gapped: 18 Length of query: 204 Length of database: 2,407,596 Length adjustment: 81 Effective length of query: 123 Effective length of database: 1,295,466 Effective search space: 159342318 Effective search space used: 159342318 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 51 (23.7 bits)