RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
(204 letters)
>d1kzla2 b.43.4.3 (A:93-202) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 110
Score = 92.7 bits (230), Expect = 2e-20
Identities = 32/102 (31%), Positives = 55/102 (53%), Gaps = 1/102 (0%)
Query: 97 RLDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPHN-LEQFIAVKGSVCLNGVSLTVNLV 155
R+ GH V GH+D EI+ G+++ + ++I KG + L+G SLT+ V
Sbjct: 1 RMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHV 60
Query: 156 GKNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMRYIARL 197
+ F +++I +T + VGDL+N+EVD + +Y +L
Sbjct: 61 DDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKL 102
Score = 41.1 bits (96), Expect = 6e-05
Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 7/89 (7%)
Query: 3 TGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSK--MKLGCSIAHAGICLTVVRLSEEHSVD 60
G V + +I+ + + + IA G LT+ + D
Sbjct: 8 QGHVDTVAEIVEKKQDGEAIDFTFRPRDPFVLKYIVYKGYIALDGTSLTITHVD-----D 62
Query: 61 NWYEVEVWAETNRITNIASWGIGTFINLE 89
+ + + + + T +A +G +N+E
Sbjct: 63 STFSIMMISYTQSKVIMAKKNVGDLVNVE 91
>d1i8da2 b.43.4.3 (A:94-206) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 113
Score = 87.0 bits (215), Expect = 1e-18
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
Query: 98 LDGHLVSGHIDGTVEILFLDFIGDSMYCRLSLPH-NLEQFIAVKGSVCLNGVSLTVNLVG 156
+ GHL+SGHI T E+ + ++ + L ++I KG + ++G+SLTV V
Sbjct: 1 IGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT 60
Query: 157 KNFFDVLLIRHTIEETTWKMHKVGDLINIEVDSMMRYIAR 196
F V LI T+E TT K+G +NIE+D + +
Sbjct: 61 PTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVD 100
Score = 44.6 bits (105), Expect = 6e-06
Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 7/91 (7%)
Query: 1 MFTGIVTDIGKIIAMTPIAK--GMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHS 58
+ +G + ++ + + +V S + I GI LTV ++
Sbjct: 5 LMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVT---- 60
Query: 59 VDNWYEVEVWAETNRITNIASWGIGTFINLE 89
+ V + ET T + +G +N+E
Sbjct: 61 -PTRFCVHLIPETLERTTLGKKKLGARVNIE 90
>d1i8da1 b.43.4.3 (A:1-93) Riboflavin synthase {Escherichia coli
[TaxId: 562]}
Length = 93
Score = 81.9 bits (202), Expect = 3e-17
Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 1 MFTGIVTDIGKIIAMTPIAKGMRLRV-MTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59
MFTGIV K++++ V + + ++ G S+AH G CLTV
Sbjct: 1 MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTV-----TEIN 55
Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKLGD 96
N ++ ET RITN+ +G ++N+ER+ K D
Sbjct: 56 GNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSD 92
Score = 70.7 bits (173), Expect = 8e-14
Identities = 23/84 (27%), Positives = 40/84 (47%)
Query: 103 VSGHIDGTVEILFLDFIGDSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDV 162
+G + GT +++ +D + + LP ++ + SV NG LTV + N
Sbjct: 2 FTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSF 61
Query: 163 LLIRHTIEETTWKMHKVGDLINIE 186
L++ T+ T KVGD +N+E
Sbjct: 62 DLMKETLRITNLGDLKVGDWVNVE 85
>d1kzla1 b.43.4.3 (A:1-92) Riboflavin synthase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 92
Score = 72.7 bits (178), Expect = 2e-14
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Query: 1 MFTGIVTDIGKIIAMTPIAK-GMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSV 59
MFTG+V IG + + G +++ G SIA G CLTV
Sbjct: 1 MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVT-----DFD 55
Query: 60 DNWYEVEVWAETNRITNIASWGIGTFINLERSVKL 94
+ V + E+ R+TN+ G +NLER+V
Sbjct: 56 RYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLS 90
Score = 58.4 bits (141), Expect = 4e-10
Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 104 SGHIDGTVEILFLDFIGD-SMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDV 162
+G ++ + + D ++ P L+ S+ +NG LTV + F V
Sbjct: 3 TGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDD-CHTGDSIAVNGTCLTVTDFDRYHFTV 61
Query: 163 LLIRHTIEETTWKMHKVGDLINIEVD 188
+ ++ T K GD +N+E
Sbjct: 62 GIAPESLRLTNLGQCKAGDPVNLERA 87
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
(Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 30.1 bits (68), Expect = 0.15
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 123 MYCRLSLPHNLEQFIAV----KGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTW 174
M+C++SL + V KG L V +NL+ +++F L I TW
Sbjct: 1 MHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFG-LAIWDNATSKTW 55
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 155
Score = 24.8 bits (53), Expect = 5.6
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 51 VRLSEEHSVDNWYEVEVWAETNRITNIASWGIGTFINLER 90
VR + E +D E+ + N +G TF++LE
Sbjct: 96 VRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEA 135
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho,
ATPase domain {Escherichia coli [TaxId: 562]}
Length = 289
Score = 24.6 bits (53), Expect = 6.4
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 10 GKII-AMTPIAKGMRLRVMTSYNTSKMKLGCSIAHA----------GICLTVVRLSEEHS 58
+++ +PI +G R ++ K L +IA + + L R E
Sbjct: 31 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE 90
Query: 59 VDNWYEVEVWAETN 72
+ + EV A T
Sbjct: 91 MQRLVKGEVVASTF 104
>d2nt0a1 b.71.1.2 (A:1-77,A:432-497) Glucosylceramidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 143
Score = 24.1 bits (52), Expect = 8.5
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 146 NGVSLTVNLVGKNFFDVLLIRHTIEETTWK 175
V LT+ F + + ++I W
Sbjct: 112 KDVPLTIKDPAVGFLETISPGYSIHTYLWH 141
>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens)
[TaxId: 9606]}
Length = 77
Score = 24.2 bits (52), Expect = 8.8
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 180 GDLINIEVDSMMRYIARLY 198
GDL + ++++R++ R
Sbjct: 58 GDLTLYQSNTILRHLGRTL 76
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.416
Gapped
Lambda K H
0.267 0.0602 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 778,022
Number of extensions: 34991
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 18
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.7 bits)