BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit
alpha [Candidatus Liberibacter asiaticus str. psy62]
         (204 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780347|ref|YP_003064760.1| riboflavin synthase subunit alpha [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 204

 Score =  418 bits (1075), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVD 60
           MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVD
Sbjct: 1   MFTGIVTDIGKIIAMTPIAKGMRLRVMTSYNTSKMKLGCSIAHAGICLTVVRLSEEHSVD 60

Query: 61  NWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIG 120
           NWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIG
Sbjct: 61  NWYEVEVWAETNRITNIASWGIGTFINLERSVKLGDRLDGHLVSGHIDGTVEILFLDFIG 120

Query: 121 DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG 180
           DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG
Sbjct: 121 DSMYCRLSLPHNLEQFIAVKGSVCLNGVSLTVNLVGKNFFDVLLIRHTIEETTWKMHKVG 180

Query: 181 DLINIEVDSMMRYIARLYALNTSQ 204
           DLINIEVDSMMRYIARLYALNTSQ
Sbjct: 181 DLINIEVDSMMRYIARLYALNTSQ 204


>537021.9.peg.753_1 
          Length = 1033

 Score = 26.2 bits (56), Expect = 0.46,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 16/83 (19%)

Query: 40  SIAHAGI--CLTVVRLSEEHSVDNWYEVEVWAETNRIT---NIASWGIGTF---INLER- 90
           S+  AG   C    R+    S+DN  +   W E NR     NI +   GTF   I LE+ 
Sbjct: 884 SLVFAGALDCFGYSRMQLLQSLDNIQKYAQWVEKNRTNKHENIFAHEKGTFSDKITLEKF 943

Query: 91  -----SVKLGD--RLDGHLVSGH 106
                SV+  +  R+ G   SGH
Sbjct: 944 SVENSSVRFENEQRVLGFYFSGH 966


>gi|254780229|ref|YP_003064642.1| hypothetical protein CLIBASIA_00570 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1775

 Score = 24.3 bits (51), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 5/27 (18%)

Query: 167 HTIEETTWKMHKVGDLIN----IEVDS 189
           HTI+E+TW + K+G  IN    IE DS
Sbjct: 85  HTIDESTW-IEKLGLSINYDLPIEYDS 110


>gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 395

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 6/31 (19%)

Query: 164 LIRHTIEETT--WKMHKVGDLI----NIEVD 188
           L + TIE+ T  +KMHK GDL+    N+ VD
Sbjct: 204 LYQLTIEKGTLFYKMHKDGDLVLPSENVAVD 234


>gi|254780810|ref|YP_003065223.1| transcription termination factor Rho [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 423

 Score = 23.1 bits (48), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 15  MTPIAKGMRLRVMTSYNTSKMKLGCSIAHA 44
           + PI KG R  ++    T K  L  +IAH+
Sbjct: 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHS 197


>gi|254780503|ref|YP_003064916.1| putative glutamine synthetase [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 461

 Score = 21.9 bits (45), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 59 VDNWYEVEVWAETNRITNI 77
          V NW +   W + NRI ++
Sbjct: 14 VKNWEQAAKWLKDNRIEDV 32


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,058
Number of Sequences: 1233
Number of extensions: 5070
Number of successful extensions: 19
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 16
Number of HSP's gapped (non-prelim): 6
length of query: 204
length of database: 328,796
effective HSP length: 70
effective length of query: 134
effective length of database: 242,486
effective search space: 32493124
effective search space used: 32493124
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 36 (18.5 bits)