HHsearch alignment for GI: 254780348 and conserved domain: PRK12411
>PRK12411 cytidine deaminase; Provisional.
Probab=95.07 E-value=0.26 Score=29.21 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEE-ECCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEEEEEC--
Q ss_conf 999999999999870882188896479998-69989999843887----6984899999973---0010698899905--
Q gi|254780348|r 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATAYVTL-- 76 (364)
Q Consensus 7 d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv-~~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atlyvtL-- 76 (364)
T Consensus 3 ~~~L~~~A~~a~~~-AYaPYS~F~VGAall~~~G~i~-~G~NvEnasy~~t~CAEr~Ai~~avs~g~~~~-~~I~v~~~~ 79 (132)
T PRK12411 3 SKQLIQEAIEARKQ-AYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEF-VAIAIVADT 79 (132)
T ss_pred HHHHHHHHHHHHHH-CCCCCCCCEEEEEEEECCCCEE-EEECCCCCCCCCCEEHHHHHHHHHHHCCCCCE-EEEEEECCC
T ss_conf 89999999999971-8288679959999995899999-98741567788751337779999986488768-999998689
Q ss_pred ----CCCCCCCCCCHHHHHHHHCC--CCEEEEECC
Q ss_conf ----73211575210555653013--432466301
Q gi|254780348|r 77 ----EPCSHYGRSPPCAQFIIECG--IRRVVVCVD 105 (364)
Q Consensus 77 ----EPC~h~GktppC~~~ii~~g--Ik~Vvi~~~ 105 (364)
T Consensus 80 ~~~~~PC------G~CRQvl~Ef~~~~~~i~~~~~ 108 (132)
T PRK12411 80 KRPVPPC------GACRQVMVELCKQDTKVYLSNL 108 (132)
T ss_pred CCCCCCC------HHHHHHHHHHCCCCCEEEEECC
T ss_conf 9867973------8889999996689957999859