HHsearch alignment for GI: 254780348 and conserved domain: TIGR00326
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD; InterPro: IPR004794 This entry describes the riboflavin biosynthesis protein (ribD) as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region that is shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins that may be related to the riboflavin biosynthesis protein contain only the C-terminal domain.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0008835 diaminohydroxyphosphoribosylaminopyrimidine deaminase activity, 0009231 riboflavin biosynthetic process.
Probab=100.00 E-value=0 Score=824.87 Aligned_cols=342 Identities=39% Similarity=0.618 Sum_probs=316.1
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCCCCCHHHHHHHHHHCCHH----------------------
Q ss_conf 999999998708821888964799986-998999984388769848999999730010----------------------
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA---------------------- 67 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~G~~HAE~~al~~~~~~~---------------------- 67 (364)
T Consensus 1 M~~AL~lA~k~~g~T~PNP~VGcViv~~ng~IVG~G~H~kaG~~HAE~~Al~~AG~~aRPeisLPkeanaLhefiCknhq 80 (393)
T TIGR00326 1 MKRALDLAKKGQGTTHPNPLVGCVIVKKNGEIVGEGFHQKAGEPHAEIHALRQAGENARPEISLPKEANALHEFICKNHQ 80 (393)
T ss_pred CHHHHHHHHHCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 93567666404310057986004898338758752466977887089999999766368865685135678887652267
Q ss_pred ---CCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHH
Q ss_conf ---698899905732115752105556530134324663010121101243311001898896-2221012320012222
Q gi|254780348|r 68 ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143 (364)
Q Consensus 68 ---~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~ 143 (364)
T Consensus 81 GvfKGat~yVTLEPCsH~GrTPPCa~aii~~Gi~kVv~~M~DpNplvaGkG~~~L~~aGIeV~~~~l~~~a~~lnk~Fl~ 160 (393)
T TIGR00326 81 GVFKGATAYVTLEPCSHYGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGKGIERLKQAGIEVTFGILKEEAEKLNKGFLK 160 (393)
T ss_pred CEEECCEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHCCCEEEECHHHHHHHHCCHHHHH
T ss_conf 41207767981576688888715689997386148988865087222341479998669725440158986400056788
Q ss_pred HCCCCCCHHHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEHHHHCCCCCCCCCCCCCCCC-------
Q ss_conf 0113422201101027877202113653222210135666764201440366312201345423544344443-------
Q gi|254780348|r 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------- 216 (364)
Q Consensus 144 ~~~~~rP~V~lK~A~SlDGkIa~~~g~s~wIT~~~sr~~vh~lRa~~DaIlvG~~Tv~~DnP~Lt~R~~~~~~------- 216 (364)
T Consensus 161 ~~~~G~Pf~~~K~A~sLDG~~A~a~~~SkWiTs~~aR~~a~~~R~~~~ai~vG~~TV~aDnP~Lt~R~~~~~~~~~~~Y~ 240 (393)
T TIGR00326 161 RMRTGLPFVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQSDAILVGGGTVRADNPALTARLDEATELLKALYK 240 (393)
T ss_pred HHCCCCCHHHHHHCCCCCCCEEECCCCCCEEECHHHHHHHHHHHHHCCEEEECCCCEEECCCCCCCCCCCCCHHHHHHCC
T ss_conf 86068853245430465761020089975672768899999976460356875730351086112647774201333120
Q ss_pred ----CCCEEEEECCCCCCCHHHHHCCCCCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCC--CCHHHHHHHHHHCCCCEE
Q ss_conf ----44215764466899802210034446707985465542101100223222223332--227889999860799699
Q gi|254780348|r 217 ----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSL 290 (364)
Q Consensus 217 ----~~P~riVld~~l~i~~~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~v~vi~~~~--~dl~~iL~~L~~~gi~~i 290 (364)
T Consensus 241 ~~~LrQP~rvvl~~~~~i~~~~k~~~~~~a~tw~~~~~~~D~~~~~~l~~~~v~~~~le~~~~~~~~~~~~L~~r~~~~v 320 (393)
T TIGR00326 241 KENLRQPLRVVLDRQLRIPEEAKLIRDQVAPTWVITTKRADREKKKFLESLEVEIFPLEKERLTIEEVMEQLGKRGINSV 320 (393)
T ss_pred HHHCCCCEEEEECCCCCCCCCCCEEECCCCCEEEEECCCCCHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 65457980899546546773001010477767888356223023236111104564222354488999999874475489
Q ss_pred EECCHHHHHHHHHHCCCCCEEEEEEECEEECC-----CCCCCCC-----CCCCCCCCCEEEEEEEECCCEEE
Q ss_conf 98123899999997889889999960743268-----8752333-----45454446405446886793699
Q gi|254780348|r 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCL 352 (364)
Q Consensus 291 LVEGG~~l~~sfl~~~LvDEl~ifiaP~ilG~-----~g~~s~~-----~~~~~~~~~~l~~~~~ig~Dv~~ 352 (364)
T Consensus 321 ~vEgG~~l~~~f~~~G~~d~l~~y~APkL~ggGvsll~~a~~~~~~~g~~~~~~al~~~~~~~~~iG~D~~~ 392 (393)
T TIGR00326 321 LVEGGPNLLGSFIDEGLVDELIIYIAPKLLGGGVSLLQEAPGLCAEPGFQKLADALNLKPLEISQIGDDILL 392 (393)
T ss_pred EEECHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEHHCCCCCCCCCCCCHHHHCCCCCCCHHHCCCCCCCC
T ss_conf 872158999999745843003424500331443100110552013211110000226871022100761025