HHsearch alignment for GI: 254780348 and conserved domain: TIGR02571
>TIGR02571 ComEB ComE operon protein 2; InterPro: IPR013404 This is encoded in the ComE operon for "late competence" as characterised in B. subtilis . The presence of a cytidine/deoxycytidine deaminase domain in these proteins means that they may perform this activity..
Probab=98.79 E-value=1.5e-08 Score=78.04 Aligned_cols=117 Identities=30% Similarity=0.460 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC-CCCC------------------HHHHHHHHHH--
Q ss_conf 789999999999998708821888964799986998999984388-7698------------------4899999973--
Q gi|254780348|r 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCP------------------HAEVQALEEA-- 63 (364)
Q Consensus 5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~-~G~~------------------HAE~~al~~~-- 63 (364)
T Consensus 4 ~W~~yfm~q~~ll~~rs---tC~rl~vGativ~d~riiaGGynGs~~G~~hC~~~GC~~~d~hC~rtihaemna~lqCak 80 (151)
T TIGR02571 4 KWDQYFMAQSHLLALRS---TCTRLSVGATIVRDKRIIAGGYNGSVAGEVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80 (151)
T ss_pred CHHHHHHHHHHHHHHHH---HCCHHEECEEEEECCEEEECCCCCEECCCCEEECCCCEEEECCEEEHHHHHHHHHHHHHH
T ss_conf 36788888888875420---000000020454236266236453013772331277378617430036788999998864
Q ss_pred -CCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEE-CCCCH
Q ss_conf -00106988999057321157521055565301343246630101211012433110018988962-22101
Q gi|254780348|r 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESE 133 (364)
Q Consensus 64 -~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~~-~~~~~ 133 (364)
T Consensus 81 ~G~~t~~a~~yvt~fPCl~------C~k~~~q~Gi~~~~y~~~y~n~~---ya~~l~~~~~~~~~~~~~~~~ 143 (151)
T TIGR02571 81 FGVSTEEAEIYVTHFPCLQ------CTKSIIQAGIKKVYYAKDYKNDP---YALELLEKAGVELKKVEFDES 143 (151)
T ss_pred CCCCCCCCEEEEEECCHHH------HHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHCCCEEEEEECCHH
T ss_conf 0554366348985075678------99999986678746666325748---899998741531133203578