HHsearch alignment for GI: 254780348 and conserved domain: cd00786
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.71 E-value=2.8e-17 Score=136.88 Aligned_cols=87 Identities=44% Similarity=0.724 Sum_probs=76.7
Q ss_pred HHHHHHHHHHCCCCCCCCCCEEEEEE--ECCEEEEEEEC----CCCCCCHHHHHHHHHHCC--HHCCCEEEEECCCCCCC
Q ss_conf 99999999870882188896479998--69989999843----887698489999997300--10698899905732115
Q gi|254780348|r 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT----AYGGCPHAEVQALEEAGE--EARGATAYVTLEPCSHY 82 (364)
Q Consensus 11 m~~a~~~a~~~~g~t~pNP~Vg~viv--~~g~ii~~g~~----~~~G~~HAE~~al~~~~~--~~~~atlyvtLEPC~h~ 82 (364)
T Consensus 1 m~~A~~~a~~ay-~p~s~~pVGa~iv~~~~~~ii~~G~N~en~~~~~t~hAE~~Ai~~a~~~~~~~~~tlyvtl~PC~~- 78 (96)
T cd00786 1 MTEALKAADLGY-AKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGDTKGQMLYVALSPCGA- 78 (96)
T ss_pred CHHHHHHHHHCC-CCCCCCCEEEEEEEECCCCEEECCCCEEECCCCCCCCHHHHHHHHHHHCCCCCCEECEEECCCHHH-
T ss_conf 979999999656-988899889999987799799776461786679733799999999752258761107872299199-
Q ss_pred CCCCHHHHHHHHCCCCEEEEEC
Q ss_conf 7521055565301343246630
Q gi|254780348|r 83 GRSPPCAQFIIECGIRRVVVCV 104 (364)
Q Consensus 83 GktppC~~~ii~~gIk~Vvi~~ 104 (364)
T Consensus 79 -----C~q~I~e~gik~vvi~~ 95 (96)
T cd00786 79 -----CAQLIIELGIKDVIVVL 95 (96)
T ss_pred -----HHHHHHHHCCCCEEEEE
T ss_conf -----99999998899689996