HHsearch alignment for GI: 254780348 and conserved domain: cd01283
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=96.79 E-value=0.0063 Score=40.07 Aligned_cols=89 Identities=27% Similarity=0.337 Sum_probs=63.5
Q ss_pred HHHHHHHHCCCCCCCCCCEEEEEEE-CCEEEEEEECCCC----CCCHHHHHHHHHH---CCHHCCCEEEEE-----CCCC
Q ss_conf 9999998708821888964799986-9989999843887----6984899999973---001069889990-----5732
Q gi|254780348|r 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYG----GCPHAEVQALEEA---GEEARGATAYVT-----LEPC 79 (364)
Q Consensus 13 ~a~~~a~~~~g~t~pNP~Vg~viv~-~g~ii~~g~~~~~----G~~HAE~~al~~~---~~~~~~atlyvt-----LEPC 79 (364)
T Consensus 3 ~a~~~~~~a-y~pyS~f~Vga~~~~~~G~i~-~G~nvEna~~~~~~cAEr~ai~~~~~~g~~~~~~~~~~~~~~~~~sPC 80 (112)
T cd01283 3 AALAAAEFA-YAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSPC 80 (112)
T ss_pred HHHHHHHCC-CCCCCCCCEEEEEEECCCCEE-EEEEEECCCCCCCEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCC
T ss_conf 799998467-688679912099993899899-989870677887511889999999982898549999993899756873
Q ss_pred CCCCCCCHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 115752105556530134324663010121
Q gi|254780348|r 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 (364)
Q Consensus 80 ~h~GktppC~~~ii~~gIk~Vvi~~~DPnp 109 (364)
T Consensus 81 G~------CrQ~l~Ef~~~~~~i~~~~~~g 104 (112)
T cd01283 81 GA------CRQVLAEFLPSRLYIIIDNPKG 104 (112)
T ss_pred HH------HHHHHHHHCCCCCEEEEECCCC
T ss_conf 46------8999998678996899997999