HHsearch results for GI: 254780348 and protein with PDBid: 2nyt_A
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=95.43 E-value=0.022 Score=34.94 Aligned_cols=118 Identities=20% Similarity=0.354 Sum_probs=74.7
Q ss_pred CCCEEEEEEE--CC--E-EEEEEECC-CCCCCHHHHHHHHHHCCHHC-----CCEEEEECCCCCCCCCCCHHHHHHHHC-
Q ss_conf 8964799986--99--8-99998438-87698489999997300106-----988999057321157521055565301-
Q gi|254780348|r 28 NPSVACLIVK--DG--I-VIGRGVTA-YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIEC- 95 (364)
Q Consensus 28 NP~Vg~viv~--~g--~-ii~~g~~~-~~G~~HAE~~al~~~~~~~~-----~atlyvtLEPC~h~GktppC~~~ii~~- 95 (364)
|-.-=|-.|+ ++ . -..+|+-. +.++-|||+.=|......+. .-|.|+|=-||. .||+.|.+.
T Consensus 32 ~~tyLCY~V~~~~~~~~~~~~~G~~~n~~~~~HAE~~Fl~~i~~~l~p~~~y~VTwy~SWSPC~------~CA~~va~FL 105 (190)
T 2nyt_A 32 NKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA------ACADRIIKTL 105 (190)
T ss_dssp CCEEEEEEEEEEETTTEEEEEEEEEEESSCSSCHHHHHHHHTSCCCCTTCEEEEEEEEEECCCH------HHHHHHHHHH
T ss_pred CCEEEEEEEECCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEECCCHH------HHHHHHHHHH
T ss_conf 8668999995468998766765783588887439999999998624977549999997449649------9999999999
Q ss_pred ----CCCEEEEECC-----CCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCC-CCCCHHHH
Q ss_conf ----3432466301-----01211012433110018988962221012320012222011-34222011
Q gi|254780348|r 96 ----GIRRVVVCVD-----DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV-EKRSHITL 154 (364)
Q Consensus 96 ----gIk~Vvi~~~-----DPnp~v~gkGi~~L~~~GI~V~~~~~~~~~~ln~~f~~~~~-~~rP~V~l 154 (364)
.++=.++++. ||+- -+|...|.++|+.|..+--+|...-=+-|..... .++||--.
T Consensus 106 ~~~~~v~L~If~sRLY~~~~~~~---q~GLr~L~~aG~~v~iM~~~eF~~CW~nFVd~~~~~g~~F~PW 171 (190)
T 2nyt_A 106 SKTKNLRLLILVGRLFMWEEPEI---QAALKKLKEAGCKLRIMKPQDFEYVWQNFVEQEEGESKAFQPW 171 (190)
T ss_dssp HHCTTEEEEEEEEECSSTTSHHH---HHHHHHHHHTTCEEEECCHHHHHHHHHHHBCCCC----CCCCC
T ss_pred HHCCCEEEEEEHHHHHHHCCHHH---HHHHHHHHHCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 87899079988635135268779---9999999987996896083899999999847766789986875