HHsearch results for GI: 254780348 and protein with PDBid: 3g8q_A
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=95.22 E-value=0.095 Score=30.64 Aligned_cols=92 Identities=24% Similarity=0.404 Sum_probs=72.0
Q ss_pred CCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHCCHHCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECC
Q ss_conf 88896479998699899998438876984899999973001069889990573211575210555653013432466301
Q gi|254780348|r 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 (364)
Q Consensus 26 ~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~~~~~~atlyvtLEPC~h~GktppC~~~ii~~gIk~Vvi~~~ 105 (364)
-|.-.|-|.+...|+|++.- .+-..|||....+. .+..|-..|||--||-. |+..+.++|+.-||+--.
T Consensus 19 ipkrtvtaalleggeivave---eaddehaerklvrr--hdvegkvvfvtarpcly------carelaeagvagvvylgr 87 (278)
T 3g8q_A 19 IPKRTVTAALLEGGEIVAVE---EADDEHAERKLVRR--HDVEGKVVFVTARPCLY------CARELAEAGVAGVVYLGR 87 (278)
T ss_dssp SCCSSCEEEEEETTEEEEEE---ECSSSCHHHHHHHH--SCCTTCEEEESSCCCHH------HHHHHHTTTCCEEEEEEC
T ss_pred CCHHHHHHHHHCCCEEEEEE---CCCHHHHHHHHHHH--HCCCCEEEEEECCHHHH------HHHHHHHCCCCEEEEECC
T ss_conf 71356469875587089885---04616777766765--05663399997651788------899987555205899615
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCH
Q ss_conf 0121101243311001898896222101
Q gi|254780348|r 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133 (364)
Q Consensus 106 DPnp~v~gkGi~~L~~~GI~V~~~~~~~ 133 (364)
-.|-|--+|...|++|-.+-.+|
T Consensus 88 -----grglgpyylarsgvevvevhpde 110 (278)
T 3g8q_A 88 -----GRGLGPYYLARSGVEVVEVHPDE 110 (278)
T ss_dssp -----SSCCHHHHHHTTTCEEEEEEECS
T ss_pred -----CCCCCCEEEECCCCEEEEECCCC
T ss_conf -----78777321311683799957998