HHSEARCH alignment of GI: 254780348 and SCOP domain: d2a8na1

Alignment
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=99.94  E-value=7.3e-27  Score=198.51  Aligned_cols=115  Identities=32%  Similarity=0.393  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC----CCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf             789999999999998708821888964799986998999984388----7698489999997300-----1069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~----~G~~HAE~~al~~~~~-----~~~~atlyvt   75 (364)
                      +.|++||+.||++|+++  ....+++||||||+||+||+.|++..    .+..|||++|+++|.+     ...|+|||||
T Consensus         1 a~~~~fM~~Al~~A~~a--~~~~~~PVGavIV~~~~ii~~g~n~~~~~~~~~~HaE~~ai~~a~~~~~~~~l~~~tly~T   78 (130)
T d2a8na1           1 AERTHFMELALVEARSA--GERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVT   78 (130)
T ss_dssp             CCHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHH--HCCCCCCEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECC
T ss_conf             95799999999999986--2359997999999899199862331012466521059899999999838767889788225


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE
Q ss_conf             5732115752105556530134324663010121101243311001898----896
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD  127 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~  127 (364)
                      ||||      |.|+.+|+.+||+|||||+.||++.+.|.++++|++.++    +|.
T Consensus        79 ~EPC------~mC~~ai~~~gI~rVvyg~~d~~~g~~gs~~~l~~~~~lnh~~eV~  128 (130)
T d2a8na1          79 LEPC------TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVY  128 (130)
T ss_dssp             ECCB------HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEE
T ss_pred             CCCC------HHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCCCCCEEE
T ss_conf             6668------7899999985569799997389998756420341077889984887


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Cytidine and deoxycytidylate deaminase CodA
species: Agrobacterium tumefaciens [TaxId: 358]