HHSEARCH alignment of GI: 254780348 and SCOP domain: d2b3ja1

Alignment
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]}
Probab=100.00  E-value=4.5e-34  Score=247.16  Aligned_cols=135  Identities=32%  Similarity=0.437  Sum_probs=121.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCC----CCCCHHHHHHHHHHCC-----HHCCCEEEEE
Q ss_conf             789999999999998708821888964799986998999984388----7698489999997300-----1069889990
Q gi|254780348|r    5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVT   75 (364)
Q Consensus         5 ~~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~----~G~~HAE~~al~~~~~-----~~~~atlyvt   75 (364)
                      .+|++||++||++|+++  ...|||+||||||++|++|+.|+++.    .+..|||++|++++..     ...++|+|+|
T Consensus         2 ~~D~~fM~~Ai~~A~~a--~~~g~~PVGaViV~~~~ii~~g~~~~~~~~~~~~HAe~~a~~~~~~~~~~~~~~~~~ly~t   79 (151)
T d2b3ja1           2 TNDIYFMTLAIEEAKKA--AQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT   79 (151)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHTTSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHH--CCCCCCCEEEEEEECCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             61899999999999984--5369898999997366410133100013676110025666479999728877778768874


Q ss_pred             CCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCC----EEE-ECCCCHHHHHHHHHHHHCCC
Q ss_conf             5732115752105556530134324663010121101243311001898----896-22210123200122220113
Q gi|254780348|r   76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----IVD-RMMESEGKIFLHAYLTRQVE  147 (364)
Q Consensus        76 LEPC~h~GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI----~V~-~~~~~~~~~ln~~f~~~~~~  147 (364)
                      ||||.      +|+.+|+++||+|||||+.|||+.+.|+|++.|+++||    +|. |++++||.+|++.||...+.
T Consensus        80 ~ePC~------mC~~aii~~gI~~Vv~g~~d~~~~~~g~~~~~l~~~~i~~~~~v~~Gvl~~e~~~L~~~Ff~~~r~  150 (151)
T d2b3ja1          80 LEPCV------MCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRA  150 (151)
T ss_dssp             ECCCH------HHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCHH------HHHCHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCEEECCCCHHHHHHHHHHHHHHHHC
T ss_conf             36435------331206651355689974069987467654456645789998797691899999999999999858


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: tRNA adenosine deaminase TadA
species: Staphylococcus aureus [TaxId: 1280]