HHSEARCH alignment of GI: 254780348 and SCOP domain: d2hxva2

Alignment
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]}
Probab=100.00  E-value=1.8e-44  Score=317.32  Aligned_cols=143  Identities=42%  Similarity=0.709  Sum_probs=136.8

Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHC---CHHCCCEEEEECCCCCCC
Q ss_conf             89999999999998708821888964799986998999984388769848999999730---010698899905732115
Q gi|254780348|r    6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG---EEARGATAYVTLEPCSHY   82 (364)
Q Consensus         6 ~d~~~m~~a~~~a~~~~g~t~pNP~Vg~viv~~g~ii~~g~~~~~G~~HAE~~al~~~~---~~~~~atlyvtLEPC~h~   82 (364)
                      +|++||++|+++|+++.+.|.|||+||||||+||+|||+|+|...|.+|||++|+..|.   ++++|+|||||||||+|.
T Consensus         1 ~he~~M~~Al~~A~~~~~~~~~~~pVGaViV~~g~IIa~g~n~~~~~~hae~~ai~~a~~~~~~l~~~~lYvTlEPC~~~   80 (147)
T d2hxva2           1 MYETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHH   80 (147)
T ss_dssp             HHHHHHHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSC
T ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECEECCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCC
T ss_conf             96999999999998605667999948999998994777611003688348999899999817887798885204555556


Q ss_pred             CCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEE-ECCCCHHHHHHHHHHHHCCCCC
Q ss_conf             752105556530134324663010121101243311001898896-2221012320012222011342
Q gi|254780348|r   83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKR  149 (364)
Q Consensus        83 GktppC~~~ii~~gIk~Vvi~~~DPnp~v~gkGi~~L~~~GI~V~-~~~~~~~~~ln~~f~~~~~~~r  149 (364)
                      |+||||+.+|+++||+|||||+.|||+ ++|+|++.|+++||+|. |++++||.+|++.||++++++|
T Consensus        81 ~~~p~C~~ai~~agi~rVv~g~~dp~~-~~~~~~~~l~~~~i~V~~gvl~~e~~~l~~~F~~~~~~kr  147 (147)
T d2hxva2          81 GKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKR  147 (147)
T ss_dssp             SSSCCHHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSS
T ss_pred             CCCHHHHHHHHHCCCCEEEEECCCCCC-CCCHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHCC
T ss_conf             997235577775386524564244654-1002335655599789938579999999999999998593


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Cytidine deaminase-like
superfamily: Cytidine deaminase-like
family: Deoxycytidylate deaminase-like
domain: Riboflavin biosynthesis protein RibD
species: Thermotoga maritima [TaxId: 2336]