BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] (364 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] gi|254040025|gb|ACT56821.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL Sbjct: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS Sbjct: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 Query: 361 LQEL 364 LQEL Sbjct: 361 LQEL 364 >gi|315122228|ref|YP_004062717.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495630|gb|ADR52229.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 367 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/363 (73%), Positives = 313/363 (86%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M +SS D RFMS ALRFS W GLT TNPSVACLIVKDGI++GRGVTAYGG PHAE QAL Sbjct: 1 MSLSSLDERFMSVALRFSCWGTGLTGTNPSVACLIVKDGIIVGRGVTAYGGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EEAGE ARGATAYVTLEPCSHYG++PPCA+FI+E GI RVVVCV DPDVRVSGRGLQWLS Sbjct: 61 EEAGERARGATAYVTLEPCSHYGQAPPCAKFIVEAGISRVVVCVIDPDVRVSGRGLQWLS 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 QKGI+VD+++E EG+ L AYLTRQV+ RSH+ LK+A+SQDNMIG+ GCG+V ITG IS+ Sbjct: 121 QKGIVVDKVLEREGERVLGAYLTRQVKNRSHVILKLALSQDNMIGIVGCGNVSITGLISR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVHLLRAQSDAILVGIGTV++D+PELTCRL+GL++ SP+RIILDPH K+SL S+I++TA Sbjct: 181 KQVHLLRAQSDAILVGIGTVISDNPELTCRLDGLKDRSPIRIILDPHLKISLSSRIMQTA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LAPVIIVTE +D LAL+ +KKN++I++C+CRDLKKLL IL RG+TSLLVEGGA VA Sbjct: 241 SLAPVIIVTEKNDCNLALSIKKKNVDIVHCNCRDLKKLLAILADRGITSLLVEGGARVAR 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SF+ S VDSIILY+SQ +IG GI SPLEE ++E NFMCVRRD FGSDVC EY+ KN C Sbjct: 301 SFMMSGFVDSIILYKSQKIIGTSGIASPLEEEFIENNFMCVRRDGFGSDVCFEYVRKNFC 360 Query: 361 LQE 363 LQE Sbjct: 361 LQE 363 >gi|222085509|ref|YP_002544039.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase protein [Agrobacterium radiobacter K84] gi|221722957|gb|ACM26113.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase protein [Agrobacterium radiobacter K84] Length = 371 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 193/359 (53%), Positives = 248/359 (69%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AA+R SRWH+GLTSTNPSV C+IVKDG VIGRGVTA GG PHAE QAL +AGE Sbjct: 9 DERFMAAAIRLSRWHLGLTSTNPSVGCVIVKDGAVIGRGVTAVGGRPHAETQALADAGEA 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYG++PPC++ +I G+ RVV+ V DPD RVSGRG+ L GI V Sbjct: 69 ARGATAYVTLEPCSHYGKTPPCSEALIAYGVARVVISVTDPDQRVSGRGIAMLRDAGIEV 128 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++E EG+ L YL RQ R ++TLK+AVS D MIG G G V ITG +++ QV + Sbjct: 129 DIGILEEEGRHSLAGYLMRQTRNRPYVTLKLAVSTDGMIGKTGTGQVRITGDVARAQVQV 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+SDAILVGIGT +ADDPELTCRL GL++ +P+RI++D +L L SK++KTA PV Sbjct: 189 VRAESDAILVGIGTAIADDPELTCRLPGLEDRTPLRIVIDDQLQLPLGSKLVKTARQYPV 248 Query: 246 IIVT-------ENDDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I V EN D L A + ++ + + +LL L RG++SLLVEGG Sbjct: 249 ITVAGHPPPFDENTDKALMARRAALDDAGVEVLQSNSNEPGELLEALGTRGISSLLVEGG 308 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A VA F+++ LVD I+L++ IGEGGI SP+ + + +F +R FG D C E+ Sbjct: 309 ARVAQRFLDADLVDRILLFQGPDAIGEGGIESPVTKTNIPPSFRHIRASQFGDDRCDEF 367 >gi|227821532|ref|YP_002825502.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234] gi|227340531|gb|ACP24749.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234] Length = 367 Score = 346 bits (887), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 181/359 (50%), Positives = 237/359 (66%), Gaps = 3/359 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AALR +R ++GLTSTNPSV C+IVKD ++GR VTA GG PHAE QAL +AGE+ Sbjct: 8 DERFMAAALRLARRNLGLTSTNPSVGCVIVKDDTIVGRAVTAPGGRPHAETQALADAGEQ 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I GI RVVVC+ DPD RV+GRG+ L GI V Sbjct: 68 ARGATAYVTLEPCSHHGRTPPCVDALIASGIARVVVCLLDPDERVAGRGVVMLRDAGIDV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ EG+ L AYL RQ KR H+TLK+AVS D MIG G G V ITG +S+ QV + Sbjct: 128 DLGVLRDEGERVLEAYLMRQRMKRPHVTLKLAVSADGMIGRKGEGQVRITGAVSRAQVQV 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DAILVG+GT ADDPELT RL GL+ SP+RI+LD L+++SK++++A Sbjct: 188 LRAETDAILVGVGTANADDPELTVRLPGLEARSPIRIVLDRRLDLAVESKLVRSARAVLS 247 Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 V ++ D P + + + + + LL L RG++SLLVEGGA A F+ Sbjct: 248 FAVADSVLDAPAMTRRSTLEEAGVEVLNADTIYDLLIALASRGISSLLVEGGARAARQFL 307 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 ++ LVD I+LY IGE GI SP + + F R +G+D+ +Y + C Q Sbjct: 308 DAGLVDRILLYTGPATIGEDGIRSPFDRMTVPAGFSLKRTARYGNDIFDDYERDSGCSQ 366 >gi|15964963|ref|NP_385316.1| riboflavin biosynthesis protein [Sinorhizobium meliloti 1021] gi|307301034|ref|ZP_07580803.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti BL225C] gi|307317768|ref|ZP_07597206.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83] gi|15074142|emb|CAC45789.1| Probable riboflavin biosynthesis protein (deaminase/reductase) [Sinorhizobium meliloti 1021] gi|20385601|gb|AAM21351.1| riboflavin-specific deaminase/reductase [Sinorhizobium meliloti] gi|306896530|gb|EFN27278.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83] gi|306903989|gb|EFN34575.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti BL225C] Length = 401 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 185/392 (47%), Positives = 240/392 (61%), Gaps = 46/392 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AALR +R ++GLTSTNPSV C+IV G ++GR VTA GG PHAE QAL EAGE+ Sbjct: 8 DERFMAAALRLARRNLGLTSTNPSVGCIIVNKGTIVGRAVTAPGGRPHAETQALAEAGEK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYV LEPCSH+G++PPCA +I G+ RVVV + DPD RV+GRG+ L GI V Sbjct: 68 ARGATAYVALEPCSHHGKTPPCADALIASGVGRVVVSILDPDERVAGRGVVMLRGAGIDV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + EG L AYL RQ +KR H+TLK+AVS D MIG G G V I+G +S+ QV + Sbjct: 128 DIGTLHEEGGRVLEAYLMRQRKKRPHVTLKLAVSADGMIGRRGEGQVRISGAVSRAQVQV 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DAILVGIGT +ADDPELT R+ GL+E SP+RI+LD L L+SK+++TA P+ Sbjct: 188 LRAETDAILVGIGTAIADDPELTVRMPGLEERSPVRIVLDRRLDLPLESKLVRTARDVPL 247 Query: 246 IIVT------------------------------ENDDPVLAL-------------AFRK 262 I+VT +PVL+ A Sbjct: 248 IVVTGDAGYPSSHEQGAGARRADEGQSSLPLSSGSTREPVLSPLAEAGTDYDARRGALEA 307 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 ++ D + LL L RG++SLLVEGGA A SF+++ LVD I+L+ IGE Sbjct: 308 AGAELLSADT--IPDLLAALASRGISSLLVEGGARAARSFLDADLVDRILLFTGPAAIGE 365 Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GGI SP + + + F R +G D+ +Y Sbjct: 366 GGISSPFQRTSVPEGFTLRRTARYGDDIFEDY 397 >gi|218463058|ref|ZP_03503149.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli Kim 5] Length = 412 Score = 337 bits (863), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 186/408 (45%), Positives = 238/408 (58%), Gaps = 54/408 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARG T YVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGEAARGGTVYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGISMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG + Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++D IL GIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDTILGGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIVTEND--------------------------DPVLALAFRKK---------- 263 A PVI+V DP R + Sbjct: 241 ARDVPVILVASEQVWPLSADAEGLPPSVLADYRGRATGLDPSFEPPTRGEMTGRAEGGTA 300 Query: 264 -----------------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + I+YC+ + LL L RG++SLLVEGGA A F+ + Sbjct: 301 PADATDLDSRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAG 360 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 LVD I LY++ +VIGEGGI SPL + F + FG D EY Sbjct: 361 LVDRIQLYQAPVVIGEGGIESPLARTDIPSGFAHMGTQIFGQDRLDEY 408 >gi|150396042|ref|YP_001326509.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419] gi|150027557|gb|ABR59674.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419] Length = 398 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 181/389 (46%), Positives = 246/389 (63%), Gaps = 43/389 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AALR SR ++G T TNPSV C+IV +G+++GR VTA GG PHAE QAL EAGE+ Sbjct: 8 DERFMAAALRLSRRNLGRTGTNPSVGCVIVNEGMIVGRAVTASGGRPHAETQALAEAGEK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+G++PPC +I G+ RVVV + DPD RV+GRG+ L + GI V Sbjct: 68 ARGATAYVTLEPCSHHGKTPPCTDALIASGVARVVVAILDPDERVAGRGIVLLREAGIAV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ EG+ L AYL RQ +KR H+TLK+AVS D MIG G G V ITG +S+ QV + Sbjct: 128 DIGVLREEGERALQAYLMRQCKKRPHVTLKLAVSNDGMIGRRGEGQVRITGAVSRAQVQI 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DAILVGIGT ADDPELT R+ GL++ SP+RI+LD +L ++SK++++A + Sbjct: 188 LRAETDAILVGIGTASADDPELTVRMQGLEDRSPVRIVLDRRLELPIESKLVRSAGEVSL 247 Query: 246 IIVTEN----------------DD-----------PVLA-LAFR------------KKNI 265 I+V + D+ P L+ +A R + Sbjct: 248 IVVAGDAGSPSPRMRVEGERRADEGQVSGVSLPLTPTLSPVAGRGGDYEARRDVLVSAGV 307 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I+ D ++ LL L RG++SLLVEGG++ A +F++ LVD I+L+ IG+GGI Sbjct: 308 EILNAD--NIPDLLAALASRGISSLLVEGGSSAARAFLDVELVDRILLFTGPSPIGKGGI 365 Query: 326 PSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 PSP + + F R +G D+ EY Sbjct: 366 PSPFQRRSVPAGFTLQRTARYGDDIFEEY 394 >gi|294852128|ref|ZP_06792801.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026] gi|294820717|gb|EFG37716.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026] Length = 373 Score = 329 bits (843), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 169/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E Y+ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETYIASEFKILRRMRYADDACAEYV 370 >gi|256369199|ref|YP_003106707.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915] gi|255999359|gb|ACU47758.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915] Length = 373 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDKKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|254701540|ref|ZP_05163368.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] gi|261752090|ref|ZP_05995799.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] gi|261741843|gb|EEY29769.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] Length = 373 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|256060883|ref|ZP_05451043.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] gi|261324881|ref|ZP_05964078.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] gi|261300861|gb|EEY04358.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] Length = 373 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAAMGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|23501654|ref|NP_697781.1| riboflavin biosynthesis protein RibD [Brucella suis 1330] gi|62289719|ref|YP_221512.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str. 9-941] gi|82699648|ref|YP_414222.1| cytidine/deoxycytidylate deaminase zinc-binding subunit [Brucella melitensis biovar Abortus 2308] gi|148559719|ref|YP_001258746.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840] gi|161618734|ref|YP_001592621.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365] gi|163843038|ref|YP_001627442.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445] gi|189023968|ref|YP_001934736.1| riboflavin biosynthesis protein RibD [Brucella abortus S19] gi|225627265|ref|ZP_03785302.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo] gi|225852283|ref|YP_002732516.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC 23457] gi|237815207|ref|ZP_04594205.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A] gi|254689028|ref|ZP_05152282.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|254693511|ref|ZP_05155339.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|254697163|ref|ZP_05158991.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|254704089|ref|ZP_05165917.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|254707010|ref|ZP_05168838.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|254709881|ref|ZP_05171692.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|254713882|ref|ZP_05175693.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|254717061|ref|ZP_05178872.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|254730059|ref|ZP_05188637.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|256031374|ref|ZP_05444988.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|256257278|ref|ZP_05462814.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|256264212|ref|ZP_05466744.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2 str. 63/9] gi|260168507|ref|ZP_05755318.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|260545528|ref|ZP_05821269.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038] gi|260566663|ref|ZP_05837133.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40] gi|260754523|ref|ZP_05866871.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|260757744|ref|ZP_05870092.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|260761569|ref|ZP_05873912.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|260883551|ref|ZP_05895165.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|261213771|ref|ZP_05928052.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|261218871|ref|ZP_05933152.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|261314477|ref|ZP_05953674.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|261317423|ref|ZP_05956620.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|261321630|ref|ZP_05960827.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|261754749|ref|ZP_05998458.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|261757977|ref|ZP_06001686.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|265988460|ref|ZP_06101017.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|297248124|ref|ZP_06931842.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str. B3196] gi|23347574|gb|AAN29696.1| riboflavin biosynthesis protein RibD [Brucella suis 1330] gi|62195851|gb|AAX74151.1| RibD, riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str. 9-941] gi|82615749|emb|CAJ10745.1| Cytidine/deoxycytidylate deaminase, zinc-binding region:Bacterial bifunctional deaminase-reductase, C-terminal:Riboflavin bio [Brucella melitensis biovar Abortus 2308] gi|148370976|gb|ABQ60955.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840] gi|161335545|gb|ABX61850.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365] gi|163673761|gb|ABY37872.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445] gi|189019540|gb|ACD72262.1| riboflavin biosynthesis protein RibD [Brucella abortus S19] gi|225617270|gb|EEH14315.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo] gi|225640648|gb|ACO00562.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC 23457] gi|237790044|gb|EEP64254.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A] gi|260096935|gb|EEW80810.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038] gi|260156181|gb|EEW91261.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40] gi|260668062|gb|EEX55002.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|260672001|gb|EEX58822.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|260674631|gb|EEX61452.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|260873079|gb|EEX80148.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|260915378|gb|EEX82239.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|260923960|gb|EEX90528.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|261294320|gb|EEX97816.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|261296646|gb|EEY00143.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|261303503|gb|EEY07000.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|261737961|gb|EEY25957.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|261744502|gb|EEY32428.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|263094456|gb|EEZ18278.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2 str. 63/9] gi|264660657|gb|EEZ30918.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|297175293|gb|EFH34640.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str. B3196] gi|326408787|gb|ADZ65852.1| riboflavin biosynthesis protein RibD [Brucella melitensis M28] Length = 373 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|17987472|ref|NP_540106.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. 16M] gi|256044453|ref|ZP_05447357.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. Rev.1] gi|260563804|ref|ZP_05834290.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. 16M] gi|265990874|ref|ZP_06103431.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. Rev.1] gi|17983168|gb|AAL52370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. 16M] gi|260153820|gb|EEW88912.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. 16M] gi|263001658|gb|EEZ14233.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. Rev.1] Length = 373 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 229/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHITSEFKILRRMRYADDACAEYV 370 >gi|326538505|gb|ADZ86720.1| riboflavin biosynthesis protein RibD [Brucella melitensis M5-90] Length = 373 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 167/354 (47%), Positives = 228/354 (64%), Gaps = 7/354 (1%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE AR Sbjct: 17 RFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEAAR 76 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI +V Sbjct: 77 GATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEVVP 136 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+LR Sbjct: 137 GILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHILR 196 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 AQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ + Sbjct: 197 AQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPLWV 256 Query: 248 VTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + P A I+ + D L +LL L +G+ S+LVEGGA VA SF Sbjct: 257 ACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAKSF 316 Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 ++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 317 LDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|209548782|ref|YP_002280699.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534538|gb|ACI54473.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 404 Score = 325 bits (832), Expect = 9e-87, Method: Compositional matrix adjust. Identities = 188/400 (47%), Positives = 243/400 (60%), Gaps = 46/400 (11%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSVTPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVVVGQAVTAVGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGAAARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E++G+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIEVDAGVLEADGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVQT 240 Query: 240 ALLAPVIIVTE-------------------NDDPVLAL---------------------- 258 A PVI+V N P+ L Sbjct: 241 ARDVPVIVVASEEISPSGSEEGLSPSALGANPQPISPLVGEMSGRTEGGATLPAAAMDLD 300 Query: 259 ----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY Sbjct: 301 SRRTALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLY 360 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 ++ +VIGEGGI SPL+ + F FG D EY Sbjct: 361 QAPVVIGEGGIESPLDATDIPPGFAQTGTQMFGEDRLDEY 400 >gi|256113297|ref|ZP_05454165.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] gi|265994710|ref|ZP_06107267.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] gi|262765823|gb|EEZ11612.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] Length = 373 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLKQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++ S +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFLSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|256159495|ref|ZP_05457263.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] gi|256254781|ref|ZP_05460317.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|261221961|ref|ZP_05936242.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|265997924|ref|ZP_06110481.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] gi|260920545|gb|EEX87198.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|262552392|gb|EEZ08382.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] Length = 373 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVS +G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSRKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|110633489|ref|YP_673697.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mesorhizobium sp. BNC1] gi|110284473|gb|ABG62532.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chelativorans sp. BNC1] Length = 370 Score = 319 bits (818), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 172/364 (47%), Positives = 232/364 (63%), Gaps = 10/364 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57 P+S+ D RFM+AA+R SR H+GLT NPSV CLIV+D ++GR VTA GG PHAE Sbjct: 5 PISAHDRRFMAAAVRLSRRHLGLTGANPSVGCLIVRDDGEGPYIVGRAVTAIGGRPHAES 64 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 QALEEAGE ARGATAYVTLEPC+H+GR+PPC+ +I G+ RVV DPD+RVSG+G Sbjct: 65 QALEEAGELARGATAYVTLEPCAHHGRTPPCSLALIAAGVARVVGAASDPDLRVSGKGYS 124 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI +V+ ++ +E L YLTR +KR +TLK+A+S D IG G G V IT Sbjct: 125 MLRAAGIEVVEGLLAAEAADLLAGYLTRSTKKRPEVTLKVALSADMKIGREGQGQVRITE 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 I++ QVH++RA++DAIL+G GT LADDP LT RL GL+ SP RI+LD H +L DS + Sbjct: 185 AIARRQVHMMRAEADAILIGNGTALADDPLLTSRLPGLEARSPARIVLDRHLRLPPDSVL 244 Query: 237 IKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291 + TA P+++ D D A + +I + D L + L L RG+++L+ Sbjct: 245 VSTAREVPLLVTAAQDVDSERRAALAAAGVELIGVEAFDGHIALPEFLEDLAARGISTLM 304 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGGA A F++ LVD + L+ + IG+ GI SP++ ++ F R FG D+ Sbjct: 305 VEGGAFTAREFLSEDLVDRLCLFVGRGKIGDEGIASPVDLDHIPSGFAKRREARFGEDLY 364 Query: 352 LEYI 355 EY+ Sbjct: 365 FEYV 368 >gi|163759204|ref|ZP_02166290.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica DFL-43] gi|162283608|gb|EDQ33893.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica DFL-43] Length = 379 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 171/363 (47%), Positives = 228/363 (62%), Gaps = 12/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58 V + D RFM+AA+R +RWH G T +NPSVA LIV++ +++GRGVTA GG PHAE Q Sbjct: 15 VDALDRRFMAAAIRLARWHQGRTGSNPSVATLIVREINDEPVIVGRGVTAVGGRPHAEPQ 74 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSGRG Q Sbjct: 75 ALAEAGDLARGATAYVTLEPCAHHGRTPPCAEALVSAGVSRVVAAASDPDDRVSGRGYQI 134 Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L I V+ ++ E L YLTR+++ R H+TLK+A+S++ IG G V ITG Sbjct: 135 LRDARIEVEENVLAEEAARDLAGYLTRRMKNRVHVTLKLALSRNGKIGRRDGGQVLITGE 194 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S QVH LRAQ+D IL+GIGT L DDP LTCR+ GL++ SP+R++LD KL + SK++ Sbjct: 195 VSNRQVHALRAQADVILIGIGTALNDDPSLTCRIEGLEDRSPIRLVLDTQLKLPVASKLV 254 Query: 238 KTALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291 +TA P+ I T D P A + I C+ D L +LL L RG++S+L Sbjct: 255 RTAREVPLWIATSAAQDHPARAGLA-AAGADFIACETHDGQIALPELLEDLAARGLSSVL 313 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGG VA +F+ LVD +IL QI I + +P G + F FG+D Sbjct: 314 VEGGEQVAEAFLAEGLVDRLILLTGQIDIEGDAVDAPFAPGIVPPGFRKTSSMTFGADHM 373 Query: 352 LEY 354 E+ Sbjct: 374 DEF 376 >gi|13476938|ref|NP_108508.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti MAFF303099] gi|14027701|dbj|BAB54294.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti MAFF303099] Length = 376 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 168/362 (46%), Positives = 226/362 (62%), Gaps = 10/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59 ++ D RFM+AALR SR + G TSTNPSV +IV+D +++G GVTA GG PHAE +A Sbjct: 12 TALDRRFMAAALRLSRRNAGRTSTNPSVGTIIVRDDGAGPMIVGTGVTAVGGRPHAETEA 71 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ GI RVV DPD RVSG+G L Sbjct: 72 LAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGIARVVGAASDPDPRVSGKGYAIL 131 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI +V++++ +E + YL R + KR +TLK+A+S D IG G G V ITG I Sbjct: 132 RAAGIVVVEKVLATEAAEQMAGYLIRSLRKRPEVTLKLALSSDGKIGRKGAGQVAITGEI 191 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ V+L+RA+SDAIL+GIGT L DDP LT RL GL+ SP RIILD +L SK++ Sbjct: 192 ARRDVYLMRAESDAILIGIGTALEDDPALTVRLPGLENRSPARIILDRQIRLPEASKLVS 251 Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 P+ + DP A + + I + D L +LL L G+ S+LVE Sbjct: 252 GVDRVPLYVAACLEADPHRRSALERAGVRFIGTETHDGVVALPELLEDLAALGMASVLVE 311 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GGA VA +F++ LVD I+L++ IGE GI SP++ ++ F +R FG D E Sbjct: 312 GGAQVAKAFLDEDLVDRIVLFQGPEAIGEDGIASPVDADHIPAGFRKLREMRFGEDSYAE 371 Query: 354 YI 355 ++ Sbjct: 372 WV 373 >gi|114704832|ref|ZP_01437740.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi HTCC2506] gi|114539617|gb|EAU42737.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi HTCC2506] Length = 381 Score = 313 bits (802), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 168/364 (46%), Positives = 223/364 (61%), Gaps = 12/364 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 +S+ + RFM+AA+RF H GLT TNPSVA LIV+D ++GRG+TA GG PHAE Q Sbjct: 14 LSAANERFMAAAIRFGFRHAGLTGTNPSVATLIVRDDGAGPRIVGRGITARGGRPHAEAQ 73 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAG ARGA AYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RV G+G Sbjct: 74 ALGEAGTLARGAVAYVTLEPCAHHGRTPPCAEALVASGVSRVVSAAADPDPRVDGKGHAI 133 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G+ + R+M E L AYLTR R ITLK+AVS D MIG G G V ITG Sbjct: 134 LEKGGLSVTPRVMAKEAASDLSAYLTRHARNRPQITLKMAVSPDGMIGRKGHGQVFITGP 193 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 I+ Q HL+RA+ DAILVG+GTV DDP L CRL GL+ SP RI+LDP + ++ ++ Sbjct: 194 IANRQTHLVRARHDAILVGMGTVREDDPGLDCRLPGLENRSPRRIVLDPDLTIEPETGLV 253 Query: 238 KTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSL 290 ++A P+ IV D D + + + CD L +L+ L G+ ++ Sbjct: 254 RSARQTPLTIVARGDTDADKRQSLMAAGADFVACDVVPGTGRVALPELMEDLGATGIQNI 313 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 LVEGGA V SF+ + LVD +IL + ++GEGGI SP++ ++ F R FG D Sbjct: 314 LVEGGATVGESFLEADLVDRLILVEGETMVGEGGIVSPIDVASGKQRFKLTERLRFGPDQ 373 Query: 351 CLEY 354 E+ Sbjct: 374 WFEF 377 >gi|260466843|ref|ZP_05813027.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum WSM2075] gi|259029345|gb|EEW30637.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum WSM2075] Length = 376 Score = 310 bits (793), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 165/362 (45%), Positives = 227/362 (62%), Gaps = 10/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59 ++ D RFM+AALR SR + G TSTNPSV LIV+D +++G GVTA GG PHAE +A Sbjct: 12 AALDHRFMAAALRLSRRNAGRTSTNPSVGTLIVRDDGAGPMIVGTGVTAVGGRPHAETEA 71 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG+G L Sbjct: 72 LAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGASSDPDPRVSGKGYAIL 131 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI +V++++ ++ + YL R ++KR + LK+A+S D IG G G V ITG + Sbjct: 132 RAAGIEVVEKVLAAQAAEQMAGYLIRSLKKRPEVILKLALSSDGKIGREGAGQVAITGDM 191 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L SK++ Sbjct: 192 ARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLVS 251 Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 P+ + DP A + + I + + L +LL L G+ S+LVE Sbjct: 252 GVDRVPLYVAACLQADPQRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLVE 311 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GGA VA +F+ LVD I+L++ IGEGGI SP++ ++ F +R FG D E Sbjct: 312 GGARVASAFLADGLVDRIVLFQGPEAIGEGGIASPIDGDHIPAGFRKLREMRFGEDGYAE 371 Query: 354 YI 355 +I Sbjct: 372 WI 373 >gi|306841987|ref|ZP_07474661.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2] gi|306843711|ref|ZP_07476311.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1] gi|306276021|gb|EFM57730.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1] gi|306287915|gb|EFM59332.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2] Length = 373 Score = 308 bits (790), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 170/357 (47%), Positives = 232/357 (64%), Gaps = 9/357 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL EAGE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCAQ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAQALVRAGVTRVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R +KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILPEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL+ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLESRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIV--TENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299 + E D A A + I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACREEASDERRA-ALGAASCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVA 313 Query: 300 HSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD ++++RS +VIG G+ E ++ F +R+ + D C EY+ Sbjct: 314 KSFLDEKLVDRLVIFRSPLVIGAADGVAVEELETHIASEFKILRQVRYADDACAEYV 370 >gi|222148205|ref|YP_002549162.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis S4] gi|221735193|gb|ACM36156.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis S4] Length = 366 Score = 308 bits (789), Expect = 9e-82, Method: Compositional matrix adjust. Identities = 182/358 (50%), Positives = 238/358 (66%), Gaps = 13/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AA+R R H+G T TNPSV C+IV DG ++G VTA GG PHAE QA+ AGE+ Sbjct: 8 DQRFMAAAIRLGRSHLGQTLTNPSVGCVIVADGTIVGSAVTAIGGRPHAERQAIAVAGEK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV V DPD RVSGRGL L+ GI + Sbjct: 68 ARGATAYVTLEPCSHHGKTPPCADALVEAGVARVVVAVTDPDPRVSGRGLSILTDAGIEV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + L AYLTRQ ++R H+TLK+A+S+D MIG AG G V ITG +++ QV L Sbjct: 128 VTGVLEREARYGLAAYLTRQTKQRPHVTLKLALSRDGMIGRAGEGQVAITGPLARTQVQL 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+SDAILVGIGT ADDP+LT RL G SP+RI+LD +L + SK+++TA P Sbjct: 188 LRAESDAILVGIGTAKADDPDLTVRLAGQTHLSPLRIVLDRRLELPIGSKLVQTAGHVPT 247 Query: 246 IIV---------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + TE+ + A + +++ DL LL L +G++SLLVEGGA Sbjct: 248 VCACGEPSTFTCTESFE-ASRTALQAAGVDV--WPVADLDDLLRQLAVQGMSSLLVEGGA 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A A +F+N+ LVD I LY+ IG G+ SPL + +NF +R FG+D EY Sbjct: 305 AAAKAFLNAGLVDRIHLYQGPDEIGGSGLASPLTPANIPENFRHLRSVNFGADRFDEY 362 >gi|153009855|ref|YP_001371070.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC 49188] gi|151561743|gb|ABS15241.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC 49188] Length = 373 Score = 308 bits (788), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 171/367 (46%), Positives = 236/367 (64%), Gaps = 15/367 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL + Sbjct: 11 ATADDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTAIGGRPHAEPQALAD 70 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSGRG L + Sbjct: 71 AGEVARGATAYVTLEPCAHHGRTPPCAEALVRAGVARVVVAATDPDERVSGRGFAILREA 130 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++ + L YL R +KR + LK+A+S D MIG G G + ITG +++ Sbjct: 131 GIEVVPGILAEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQLAITGPVARA 190 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 Q H+LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L SK+++TA Sbjct: 191 QSHILRAQTDIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDSGLRLPLSSKLVQTAD 250 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--------DCR-DLKKLLTILVGRGVTSLLV 292 P+ I + AL R+ + C DCR L +L+ L +G++S+LV Sbjct: 251 AQPLWIACGEE----ALPERRYELQAAGCRILATEAYDCRIALPELMDDLAAQGISSVLV 306 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 EGGA VA SF++ LVD + ++RS + IG E G+ E ++ F +R+ +G D Sbjct: 307 EGGAGVAKSFLDEGLVDRLAIFRSPVEIGSELGVAVDGLETHIADKFKILRQARYGDDAY 366 Query: 352 LEYIGKN 358 EY+ K Sbjct: 367 TEYVRKT 373 >gi|325292542|ref|YP_004278406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Agrobacterium sp. H13-3] gi|325060395|gb|ADY64086.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Agrobacterium sp. H13-3] Length = 413 Score = 306 bits (785), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 180/403 (44%), Positives = 240/403 (59%), Gaps = 55/403 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM+ A+ S H G T TNPSV C++VKD +I VTA GG PHAE QALE AGE Sbjct: 7 DEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAEAVTAIGGRPHAERQALEIAGEA 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L + GI+V Sbjct: 67 ARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYSILREAGIVV 126 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ +GK L YLTRQV+KR H+ LK+A+S D MIG G G V ITG +++ VH Sbjct: 127 ETGLLREQGKRALAGYLTRQVKKRPHVILKLAISSDGMIGRQGEGQVAITGPQARHAVHE 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+ D ILVGI T +ADDPELT R+ GL++ SP+RI+LD F+L L SK++KTA PV Sbjct: 187 LRARCDCILVGIRTAIADDPELTVRIAGLEDRSPVRIVLDRKFELPLTSKLVKTARDLPV 246 Query: 246 IIVT--------------ENDDP----------------------VLALAFRKKNI---- 265 ++ E D P L+++ R+ + Sbjct: 247 VVAALPPSALPGISPSRGEIDSPRPTRSDLVSVTHSPTFGVGKNAALSISPREGEVPGRA 306 Query: 266 --------------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 + + L+ LL IL RG++ LLVEGGA A SF+ + LVD I Sbjct: 307 EGGSHDRRQPLIDAGVEILEAPTLENLLHILAERGMSELLVEGGAFAAKSFLEADLVDRI 366 Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +L+ S +V+GEGGI +PL + +++ V +G D C +Y Sbjct: 367 MLFESPVVVGEGGIETPLSRADIPGDYVLVSETAYGPDRCFDY 409 >gi|239831592|ref|ZP_04679921.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG 3301] gi|239823859|gb|EEQ95427.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG 3301] Length = 375 Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 170/362 (46%), Positives = 231/362 (63%), Gaps = 7/362 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V+S D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E Sbjct: 13 VTSDDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAE 72 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSG+G L + Sbjct: 73 AGDAARGATAYVTLEPCAHHGRTPPCAETLVRAGVARVVAAATDPDERVSGKGFAILREA 132 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++ + L YL R +KR + LK+A+S D MIG G G V ITG I++ Sbjct: 133 GIEVVPGILADQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQVAITGPIARA 192 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 Q H+LRAQ+D IL+GI T LADDP L CRL GL + SP+R++LD +L L S++++T Sbjct: 193 QSHILRAQTDVILIGIETALADDPVLNCRLRGLGQRSPVRVVLDGGLRLPLSSRLVQTTD 252 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGA 296 P+ I E P I+ DCR L +L+ L +G++S+LVEGGA Sbjct: 253 AQPLWIACGEEASPERRYELTAAGCRILATEADDCRIALPELMDDLAAQGISSVLVEGGA 312 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 VA SF++ LVD + ++RS + IG E G+ E ++ F +R+ +G D EY+ Sbjct: 313 GVAKSFLDEGLVDRLAIFRSPVEIGSEHGVAVDGLETHIADEFKILRQARYGDDAYAEYV 372 Query: 356 GK 357 K Sbjct: 373 RK 374 >gi|319784162|ref|YP_004143638.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170050|gb|ADV13588.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 371 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 163/362 (45%), Positives = 226/362 (62%), Gaps = 10/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA 59 ++ D RFM+AALR SR + G T+TNPSV LIV+D +++G GVTA GG PHAE +A Sbjct: 7 AALDRRFMAAALRLSRKNAGRTATNPSVGTLIVRDDGNGPMIVGTGVTAVGGRPHAETEA 66 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L EAG+ ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG+G L Sbjct: 67 LAEAGDLARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGAASDPDSRVSGKGYAIL 126 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ +V++++ +E + YL R + KR + LK+A+S D IG G G V ITG I Sbjct: 127 RAAGVEVVEKVLAAEAAEQMAGYLIRSLRKRPEVILKLALSSDGKIGREGDGQVSITGDI 186 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L SK++ Sbjct: 187 ARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLVS 246 Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 P+ I DP+ A + + I + + L +LL L G+ S+LVE Sbjct: 247 GVDRVPLYIAACLEADPLRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLVE 306 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GGA VA +F+ LVD I+L++ IG+ GI SP++ ++ F +R FG D E Sbjct: 307 GGARVASAFLADGLVDRIVLFQGPDAIGDDGIASPVDADHIPAGFRKLRDMRFGEDSYAE 366 Query: 354 YI 355 +I Sbjct: 367 WI 368 >gi|241204003|ref|YP_002975099.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857893|gb|ACS55560.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 438 Score = 305 bits (781), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 148/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+AA+R SRWH+G T+TNPSV CLIV+ G+++GR VTA GG PHAE QAL Sbjct: 1 MRITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVRGGVIVGRAVTALGGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYVTLEPCSH+G++PPC+Q +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGALARGATAYVTLEPCSHHGKTPPCSQALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIEVDTGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + QV LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAQVQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPSLALPLTSKLVET 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 AREVPVIVVASEE 253 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 54/96 (56%) Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 A + +++C+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ + Sbjct: 339 ALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPV 398 Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 VIGEGGI SPL+ + F FG D EY Sbjct: 399 VIGEGGIESPLDATDIPSGFAHTGTLMFGGDRLDEY 434 >gi|254718884|ref|ZP_05180695.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] gi|265983870|ref|ZP_06096605.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] gi|264662462|gb|EEZ32723.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] Length = 373 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/356 (47%), Positives = 228/356 (64%), Gaps = 7/356 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL EAGE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R K + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKCPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L SK++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPPSSKLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALSAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYV 370 >gi|90419410|ref|ZP_01227320.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] gi|90336347|gb|EAS50088.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] Length = 383 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 168/365 (46%), Positives = 221/365 (60%), Gaps = 12/365 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57 P + D RFM+AA+R+++ HVG T+TNPSVA LIV+D ++GRGVTA GG PHAE Sbjct: 14 PATDADRRFMAAAIRYAQRHVGRTATNPSVATLIVRDDGTGPRIVGRGVTAIGGRPHAET 73 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL EAGE ARGATAYVTLEPC+H+GR+PPCA+ ++ GI RVV DPD RV GRG Sbjct: 74 GALAEAGELARGATAYVTLEPCAHHGRTPPCAEALVTAGIARVVSAAADPDPRVDGRGHA 133 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L G+ + R+M +E + YLTR R I LK+A+S+D IG+ G G V ITG Sbjct: 134 ILRAGGLSVTPRVMAAEAAAPISGYLTRHGAGRPEILLKMALSRDGRIGIRGGGQVKITG 193 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ Q HL+RA+ D IL+G GT DDP L CRL G+ + SP RI+LDP + D I Sbjct: 194 AVADAQTHLVRARHDTILIGAGTAQEDDPRLDCRLPGMADRSPNRIVLDPRLRTPPDLTI 253 Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289 +TA P +I T + DP A ++ + I C+ L +LL L GV S Sbjct: 254 ARTAAETPTLIATLASADPERRAALARQGVQFIACEADPETGRIALPELLEDLAATGVAS 313 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +LVEGGA SF++S LVD +IL + + IGE G+ +P++ F VR FG D Sbjct: 314 VLVEGGAETGASFLDSDLVDRLILVQGPVEIGEEGVRAPIDVATARCRFRLVREYRFGDD 373 Query: 350 VCLEY 354 E+ Sbjct: 374 HWYEF 378 >gi|86357148|ref|YP_469040.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea minase protein [Rhizobium etli CFN 42] gi|86281250|gb|ABC90313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea minase protein [Rhizobium etli CFN 42] Length = 435 Score = 298 bits (763), Expect = 8e-79, Method: Compositional matrix adjust. Identities = 147/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV C+IVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCVIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I CG+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGDLARGATAYVTLEPCSHHGKTPPCAEALIACGVARVVISVTDPDPRVSGRGISMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIAVDAGVLEAEGRRSLAAYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQTLRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPLLSLPLTSKLVAT 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 ARDVPVILVASEE 253 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 58/101 (57%) Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 +A + I+YC+ + LL L RG++SLL+EGGA A F+ + L+D I LY++ Sbjct: 335 VALEAAGVEIVYCNPYHPEVLLPALATRGISSLLIEGGAKTAKLFLEAGLLDRIQLYQAP 394 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +VIGEGGI SP++ + F + FG D EY +N Sbjct: 395 VVIGEGGIESPVQATDIPSGFTHMGTQLFGVDRLDEYEREN 435 >gi|15888505|ref|NP_354186.1| bifunctional riboflavin deaminase-reductase [Agrobacterium tumefaciens str. C58] gi|15156207|gb|AAK86971.1| bifunctional riboflavin deaminase-reductase [Agrobacterium tumefaciens str. C58] Length = 414 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 180/404 (44%), Positives = 235/404 (58%), Gaps = 56/404 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM+ A+ S H G T TNPSV C++VKDG +I VTA GG PHAE QALE AGE Sbjct: 7 DEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQALEIAGEA 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L GI+V Sbjct: 67 ARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILRDAGIVV 126 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ EGK L YLTRQ++KR H+ LK+AVS D MIG G G V ITG S+ VH Sbjct: 127 ETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAESRRVVHE 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT------ 239 LRA+ D ILVGI T +ADDPELT R+ G++ SP+RI+LD F+L L SK++++ Sbjct: 187 LRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRSAREVPV 246 Query: 240 ----------------------ALLA----------PVIIVTENDDPVLA-----LAFRK 262 AL A P + V ++ P + + R Sbjct: 247 IVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEGEMPGRA 306 Query: 263 KNIN------------IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + N + + L+ LL IL G++ LLVEGGA A SF+ + LVD Sbjct: 307 EGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLEAGLVDR 366 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 I+L+ S +VIGEGGI +PL + ++ V +G D C +Y Sbjct: 367 IMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDY 410 >gi|190891194|ref|YP_001977736.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhizobium etli CIAT 652] gi|190696473|gb|ACE90558.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CIAT 652] Length = 455 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 147/253 (58%), Positives = 187/253 (73%), Gaps = 2/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIV-TEN 251 A PVI+V +EN Sbjct: 241 AREVPVILVASEN 253 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 54/91 (59%) Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ +VIGEG Sbjct: 361 GVEIVYCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEG 420 Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GI SPL+ + F + FG D EY Sbjct: 421 GIESPLDATDIPSGFTHMGTQMFGVDRLDEY 451 >gi|116251387|ref|YP_767225.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256035|emb|CAK07116.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae 3841] Length = 448 Score = 288 bits (738), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+AA+R SRWH+G T+TNPSV CLIVKDG+++GR VTA G PHAE QAL Sbjct: 1 MSITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVKDGVIVGRAVTALSGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EA ARGATAYVTLEPCSH+G++PPC++ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEASALARGATAYVTLEPCSHHGKTPPCSEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG ++ Sbjct: 121 EAGIEVDAGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGEGQVAITGPLA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + Q LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAQAQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPFLALPLTSKLVET 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 ARQVPVIVVASEE 253 Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 52/96 (54%) Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 A + +++C+ + LL L RG++SLLVEGGA A F+ + LVD + LY++ Sbjct: 349 ALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLKAGLVDRVQLYQAPA 408 Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 VIGE GI SPL+ + F FG D EY Sbjct: 409 VIGERGIESPLDATDIPSGFAHTGTLLFGEDRLDEY 444 >gi|118587985|ref|ZP_01545395.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614] gi|118439607|gb|EAV46238.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614] Length = 374 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 162/335 (48%), Positives = 226/335 (67%), Gaps = 10/335 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGVTAYGGCPHAEVQ 58 +S+ DARFM+AA R +R +G NPSVA LIV+ DG +V GRGVT+ G HAEV Sbjct: 4 LSNLDARFMAAAERLTRRGLGRVWPNPSVAALIVRFEDGAAVVAGRGVTSRPGMAHAEVN 63 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE+A+GAT YVTLEPCSHYGR+PPCA+ +IE G++RVVV + DP+ RV+GRG+ Sbjct: 64 ALNQAGEKAQGATCYVTLEPCSHYGRTPPCAKALIEAGVKRVVVGMLDPNPRVAGRGVGM 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + GI +V + E + + RQ+++R + LK+AVS+D IG AG G V I+G Sbjct: 124 LREAGIEVVVGVREKAMQALYRGFTYRQLKQRPVVFLKLAVSRDGFIGRAGEGQVKISGP 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S +VH RA+ DAILVG GT LADDP+LTCRL GL + SP+R+I+D +LSL SK++ Sbjct: 184 LSMRKVHGYRAECDAILVGSGTALADDPQLTCRLPGLADRSPVRVIIDRCARLSLTSKLV 243 Query: 238 KTALLAPVIIV---TENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLV 292 +T + PV +V T + D + LA N+ + + +K +L+ L RG+T ++V Sbjct: 244 QTCVDVPVWLVCSNTADADKIADLAAAGVNVIRVPAEETGIKPSVILSALATRGITRVMV 303 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 EGG+ +A SF+ + LVD + + IVIGEGGIP+ Sbjct: 304 EGGSRLASSFLAADLVDDLCVVTGDIVIGEGGIPA 338 >gi|319898992|ref|YP_004159085.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73] gi|319402956|emb|CBI76507.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73] Length = 374 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 228/378 (60%), Gaps = 22/378 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + H+ LT NPSV LIVK D ++G GVTA G PHAE Sbjct: 1 MSREAQDKRFMAAAIRLAERHINLTGKNPSVGALIVKNNETDASIVGYGVTAVQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAY+TLEPCSHYG++PPC +I+ GI RVV+ + DPD RV GRG+ Sbjct: 61 VQALLMAGPLAYGATAYITLEPCSHYGKTPPCVNALIDAGIARVVIALPDPDQRVYGRGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN +G G ++ I+ Sbjct: 121 ALLRSAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGVGKKGQSNLKIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS +Q H+LRAQ+D I+VGIGT+LADDP+L CRL GL+ SP+R+ILD + ++ LD+K Sbjct: 181 GEISHSQTHILRAQNDVIMVGIGTILADDPKLDCRLPGLEMRSPIRVILDKNLRIPLDAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKL------LTILVG 284 +++TA P ++ L+ ++K I + C L L +L Sbjct: 241 VVQTAANIPTWVICGT-----VLSKKRKKIALEQYGVTVCSVEANNNLIPPLAILRLLYQ 295 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 R + S+L+EGGA F+N+ VD +I + + I++G+ I +P E YL + F + Sbjct: 296 RKINSVLLEGGAKTGEIFLNASCVDRLICFYAPIILGKDRIEAPHFESYLSE-FNKIEMR 354 Query: 345 YFGSDVCLEYIGKNLCLQ 362 G+D ++ K LC Q Sbjct: 355 MLGNDRLYKWRRKILCSQ 372 >gi|254500590|ref|ZP_05112741.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11] gi|222436661|gb|EEE43340.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11] Length = 375 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 165/364 (45%), Positives = 221/364 (60%), Gaps = 19/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEV 57 ++ D RFM+AA R +R +G NP+VA LIV++ +++GRGVT+ G HAEV Sbjct: 4 ITETDNRFMAAAERLARRGLGRVWPNPAVAALIVQENSEGVPVLVGRGVTSRPGMAHAEV 63 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL +AGE A+GAT YVTLEPCSHYGR+PPC+ +IE G+ RVVV + DP+ RVSGRG+ Sbjct: 64 NALTQAGELAKGATCYVTLEPCSHYGRTPPCSLALIEAGVSRVVVGMMDPNPRVSGRGVG 123 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI +V + E K + RQ R + LK+AVS+D IG G G + I+G Sbjct: 124 MLQDAGIELVTGVRERALKDLYRGFTYRQRRHRPSVFLKLAVSKDGFIGREGEGQIKISG 183 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 IS VH RA SDAILVGIGT LADDP+LTCRL GL SP+R+++D +L L SK+ Sbjct: 184 PISMRMVHGFRAASDAILVGIGTALADDPQLTCRLPGLHARSPVRVVVDRQARLPLMSKL 243 Query: 237 IKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289 ++T + PV +V N D V ALA +NII D +L+ L RG+T Sbjct: 244 VRTCVDVPVWLVCGNAADADKVNALA--AAGVNIIRVPATQTGIDPDVILSALATRGITR 301 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDY 345 L+VEGGA +A SF+N+ L+D + + + IGEGGIP+ L + F + Y Sbjct: 302 LMVEGGARLASSFLNAGLIDDLCVVTGDMEIGEGGIPALHDLDLANVLTDPQFARIGAGY 361 Query: 346 FGSD 349 G+D Sbjct: 362 LGAD 365 >gi|316934111|ref|YP_004109093.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris DX-1] gi|315601825|gb|ADU44360.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris DX-1] Length = 389 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 161/360 (44%), Positives = 214/360 (59%), Gaps = 12/360 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE Sbjct: 27 DQRFMQLALALGRRGQGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAGEA 86 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+GRSPPCA I+ GI RVV ++DP+ V+G+G L GI V Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIVAAGIARVVSAIEDPNPLVAGQGHAKLRAAGIAV 146 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + ++ HA +L R +R H+TLK+AVS D I AG V ITG + + HL Sbjct: 147 EIGICADEATHDHAGHLCRISARRPHVTLKLAVSADGKIAAAGHKQVAITGEAANARTHL 206 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A + Sbjct: 207 LRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPSASKLVHSARTTSL 266 Query: 246 -IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGAAV 298 ++ +E D A +++ DC DL +L L +GVT LLVEGGA V Sbjct: 267 WLMASEIADAATAARLGAAGAEVVHVADCAAAPGLDLPAVLHALSDKGVTRLLVEGGARV 326 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +F+ R D I L+RS+ IG G+ + PL ++ + GSD Y Sbjct: 327 AAAFVTQRRADEIRLWRSETTIGPDGVDALAGLPLAAITDSPHWRVRSSERVGSDTLTIY 386 >gi|27380142|ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] gi|27353296|dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 158/359 (44%), Positives = 214/359 (59%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V +IVKDG+++GRG T GG PH E +AL AGE Sbjct: 21 DRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHGEPEALRRAGEA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+G+SPPCA +I GI+RVV ++DP+ V+G+G L GI V Sbjct: 81 ARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVAAIEDPNPEVAGQGHARLRAAGITV 140 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + + F HA + R ++R H+ LK+AVS D IG AG V ITG +N+VHL Sbjct: 141 DVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPDGKIGAAGGKPVAITGEAVRNRVHL 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAILVGIGTVLADDP LTCRL G+ SP+R++LD ++S S+++++A P+ Sbjct: 201 LRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVRVVLDQSLRMSAASQLVRSARETPL 260 Query: 246 IIV-TENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +V +E + A II DL +L +L +G++ L+VEGG+ VA Sbjct: 261 WVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDLPAVLHVLAEKGISRLMVEGGSRVA 320 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 SF+ + LVD I L+R +G G+ + PL + + + + F D Y Sbjct: 321 ASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSKITQSQAYKVHASETFDKDTLTIY 379 >gi|218662593|ref|ZP_03518523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli IE4771] Length = 287 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 147/252 (58%), Positives = 186/252 (73%), Gaps = 1/252 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGEAARGATAYVTLEPCSHHGKTPPCAEALIAHGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG + Sbjct: 121 EAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIVTEN 251 A PVI+V Sbjct: 241 ARDVPVILVASE 252 >gi|319408448|emb|CBI82103.1| Riboflavin biosynthesis protein ribD [Bartonella schoenbuchensis R1] Length = 375 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 159/380 (41%), Positives = 225/380 (59%), Gaps = 22/380 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R ++ H+GLT NPSV LIV+D ++G GVTA G PHAE Sbjct: 2 MNKEAQDNRFMAAAIRLAQRHIGLTGQNPSVGALIVRDDDGKASIVGYGVTAIHGRPHAE 61 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG + GATAYVTLEPCSHYG + PC +I+ GI RVV+ + DPD RV GRG+ Sbjct: 62 VQALLMAGPLSHGATAYVTLEPCSHYGETSPCVNALIDSGISRVVIALTDPDKRVCGRGI 121 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG+ G V I+ Sbjct: 122 ALLRAAGIEVVEGVLAREAFETLSAYLCIKKLQRCEVTLKMAISADNGIGIKKKGRVEIS 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G + H+LRAQ+DAI+VGIGT+LAD+P+L+CRL GL+ SP+RIILD + ++ D+K Sbjct: 182 GAQAHTYTHILRAQNDAIMVGIGTILADNPQLSCRLPGLEMRSPVRIILDANLRIPFDAK 241 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----------DCRDLKKLLTILVG 284 +I+TA P ++ A + K I + C +L +L Sbjct: 242 VIQTATKIPTWVICNA-----TFAEKSKKIALEQCGVCIFPIEMSAHLMQPFAILQLLCQ 296 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 RG+ S+L+EGGA F+N+ VD +I + + +++G I +P YL + F + Sbjct: 297 RGINSILLEGGAKTGEIFLNAGCVDQLICFHAPVILGADRIDAPHFATYLSE-FNEIETK 355 Query: 345 YFGSDVCLEYIGKNLCLQEL 364 G+D ++ K LCLQ L Sbjct: 356 MLGNDRLCKWRRKTLCLQGL 375 >gi|163868466|ref|YP_001609675.1| riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP 105476] gi|161018122|emb|CAK01680.1| Riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP 105476] Length = 375 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 156/373 (41%), Positives = 224/373 (60%), Gaps = 19/373 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALE 61 D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA+ G PHAEVQAL Sbjct: 7 DERFMAAAIRLAERHVGLTGENPSVGALIVQNDDCAGPFIVGYGVTAFHGRPHAEVQALR 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+GATAYVTLEPC+HYG++ PC +I+ GI R+VV + D D RV GRGL L + Sbjct: 67 MAGPLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRIVVALTDCDKRVDGRGLALLRE 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V+ ++ E L + + +R +T K+AVS DN +G G + I+G +S Sbjct: 127 AGIKVVEGILAEEAFESLWTHWCIKKMQRCAVTFKMAVSADNSVGKRDEGEIRISGALSH 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + L++K+++TA Sbjct: 187 THTHILRAQNNAILVGIGTILADDPQLNCRLPGMEMRSPIRIILDADLSIPLEAKVVQTA 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK---------KLLTILVGRGVTSLL 291 + P ++ + D L+ +K + ++ LL IL G+ S+L Sbjct: 247 IKIPTWVICDVD---LSKKSKKNTLEQYGVSVYSVEMNNGYVEPFALLQILYKHGINSVL 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +EGG F+N+ VD +I + S +V+G+ I +P YL + F V FG+D Sbjct: 304 LEGGVKTGEKFLNAGCVDHLICFYSPVVLGKKRIEAPHFGNYLSQ-FHEVETKMFGNDRF 362 Query: 352 LEYIGKNLCLQEL 364 ++ K LC QEL Sbjct: 363 YKWRRKTLCSQEL 375 >gi|240850690|ref|YP_002972090.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup] gi|240267813|gb|ACS51401.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup] Length = 375 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 154/370 (41%), Positives = 224/370 (60%), Gaps = 13/370 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-----GIVIGRGVTAYGGCPHAEVQALE 61 D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA G PHAEVQAL Sbjct: 7 DERFMAAAIRLAERHVGLTGENPSVGTLIVRNDNSAGAFIVGYGVTAIHGSPHAEVQALH 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+GATAYVTLEPC+HYG++ PC +I+ GI RVVV + D D RV G G+ L Sbjct: 67 MAGSLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRVVVALTDCDKRVDGHGIALLRA 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V+ ++ E L + + +R +T K+A+S DN +G GSV I+G +S Sbjct: 127 AGIEVVEGILAEEAFESLWTHWCIRKIQRCAVTFKMAISADNGVGKREKGSVKISGTLSH 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + LD+K+++TA Sbjct: 187 AHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEVRSPIRIILDTDLSIPLDAKVVQTA 246 Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 + P ++ + D A + +++ + C + LL +L G+ S+L+EG Sbjct: 247 MKIPTWVICDVDLSKKSKKNALEQYGVSVYSVEMNNGCVEPFALLQMLYKYGINSVLLEG 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G +F+N+ VD +I + + +++GEG + +P YL + F V FG+D ++ Sbjct: 307 GVKTGETFLNAGCVDHLICFYAPVILGEGRVEAPHFGNYLSQ-FRKVESRMFGNDRFYKW 365 Query: 355 IGKNLCLQEL 364 K LC Q L Sbjct: 366 RRKALCSQGL 375 >gi|192291382|ref|YP_001991987.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris TIE-1] gi|192285131|gb|ACF01512.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris TIE-1] Length = 389 Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 160/362 (44%), Positives = 216/362 (59%), Gaps = 12/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRAAGI 144 Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + +E HA R++ ++R H+TLK+AVS D I AG V ITG + + Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A + Sbjct: 205 HLLRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRALRIPAASKLLHSARTS 264 Query: 244 PV-IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 P+ ++ +E + A +I+ DC DL +L L +GVT LLVEGGA Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLLVEGGA 324 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA S + L D I L+RS IG GI + PL ++ + G+D Sbjct: 325 RVAASLVTGELADEIWLWRSDNPIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384 Query: 353 EY 354 Y Sbjct: 385 IY 386 >gi|218673496|ref|ZP_03523165.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli GR56] Length = 419 Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 135/233 (57%), Positives = 171/233 (73%), Gaps = 1/233 (0%) Query: 21 HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 H+G T+TNPSV CLIVKDG+ +G+ VTA GG PHAE QAL EAG+ ARGATAYVTLEPCS Sbjct: 2 HLGRTATNPSVGCLIVKDGVTVGQAVTALGGRPHAEPQALAEAGQLARGATAYVTLEPCS 61 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139 H+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L GI VD ++++EG+ L Sbjct: 62 HHGKTPPCAEALIASGVARVVISVTDPDPRVSGRGVSMLRDAGIEVDAGVLQAEGRRSLA 121 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 YLTRQ + R ++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIGT Sbjct: 122 GYLTRQTKNRPYVTLKLAVSADGMIGRKGEGQVAITGPEARAEVQALRAETDAILVGIGT 181 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 ++DDP LT R GL+ SP+RI+LDP L L SK++ TA PVI+V D Sbjct: 182 AISDDPLLTVRTPGLEAQSPVRIVLDPSLALPLTSKLVATARDVPVIVVASED 234 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 38/96 (39%), Positives = 54/96 (56%) Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 A + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ + Sbjct: 320 ALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQAPV 379 Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +IG GI SPL+ + F + FG+D EY Sbjct: 380 IIGADGIESPLDATDIPSGFAHMGTRIFGADRLDEY 415 >gi|39935793|ref|NP_948069.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris CGA009] gi|39649646|emb|CAE28168.1| putative riboflavin-specific deaminase / reductase [Rhodopseudomonas palustris CGA009] Length = 389 Score = 273 bits (698), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 158/362 (43%), Positives = 214/362 (59%), Gaps = 12/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRTAGI 144 Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + +E HA R++ ++R H+TLK+AVS D I AG V ITG + + Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRA+SDA+L+GIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A Sbjct: 205 HLLRARSDAVLIGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPAASKLLHSARTT 264 Query: 244 PV-IIVTENDDPVLALAFRKKNINIIY-CDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 P+ ++ +E + A +I+ DC DL +L L +GVT L VEGGA Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLFVEGGA 324 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA S + L D I L+RS IG GI + PL ++ + G+D Sbjct: 325 RVAASLVAGELADEIWLWRSDNAIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384 Query: 353 EY 354 Y Sbjct: 385 IY 386 >gi|328543537|ref|YP_004303646.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [polymorphum gilvum SL003B-26A1] gi|326413281|gb|ADZ70344.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Polymorphum gilvum SL003B-26A1] Length = 388 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 158/366 (43%), Positives = 217/366 (59%), Gaps = 14/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 V D R+M+AA+ +R +G NPSV LIV D +V+GRGVT+ G PHAEV Sbjct: 18 VCDIDRRYMAAAVALARRGLGRVWPNPSVGALIVADTGGAPVVVGRGVTSPPGGPHAEVN 77 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AG+ ARGAT YVTLEPCSH+GR+PPC+ ++ G+RRVV+ + DP+ RVSGRG+ Sbjct: 78 ALRQAGDRARGATCYVTLEPCSHHGRTPPCSAALVSAGVRRVVIGIADPNRRVSGRGIGM 137 Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI V +E+ LH + R + +R +TLK+A+S D IG G G + ITG Sbjct: 138 LRDAGIAVTVGVEAVACRDLHLGHSLRVLAQRPAVTLKLALSADGFIGRLGAGQIAITGS 197 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +SK H +RA+SD ILVG+GTVLADDP+LTCRL GL+ SP+R++LDP+ +L L S+++ Sbjct: 198 LSKRFAHGIRARSDGILVGVGTVLADDPQLTCRLPGLEGRSPVRVVLDPNARLPLGSRLV 257 Query: 238 KTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 ++A PV V N DP A + + II D LT L RG+T ++V Sbjct: 258 RSAAEVPVWAVVANAADPDRLGALARAGVLIIRVPAGPEGIDPLVALTALSARGITRVMV 317 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGS 348 EGG+ VA +F+ + +VD L +G GG+ EG F V +G Sbjct: 318 EGGSRVAAAFLRADMVDEAWLVHGPASLGAGGVLPFGAEGADALAGTGRFHVVETGIWGE 377 Query: 349 DVCLEY 354 D + Y Sbjct: 378 DHYVRY 383 >gi|319404317|emb|CBI77910.1| Riboflavin biosynthesis protein ribD [Bartonella rochalimae ATCC BAA-1498] Length = 374 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 160/377 (42%), Positives = 224/377 (59%), Gaps = 20/377 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56 M + D RFM+ A+R + H+GLT NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MNKAEQDKRFMAVAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTAIQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+ Sbjct: 61 VQALLMAGPLACGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG G GSV ++ Sbjct: 121 ALLRAAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGQGSVRVS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ LD+K Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEMRSPIRVILDKDLRIPLDAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKK----NINIIYCDCRDLKKLLT------ILVGR 285 +++TA P ++ +L RKK I C LL+ +L R Sbjct: 241 VVQTAANIPTWVICSTG----SLKKRKKIALEQCGITICSVDTNNNLLSPFAILQLLYQR 296 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345 + S+L+EGGA F+++ VD +I + + I++G+ I +P + YL + F V Sbjct: 297 KINSVLLEGGAKTGKIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNKVEIRM 355 Query: 346 FGSDVCLEYIGKNLCLQ 362 G+D ++ K LC Q Sbjct: 356 LGNDRLYKWRRKILCSQ 372 >gi|319407322|emb|CBI80963.1| Riboflavin biosynthesis protein ribD [Bartonella sp. 1-1C] Length = 374 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 161/375 (42%), Positives = 225/375 (60%), Gaps = 16/375 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MDKAEQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTALQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+ Sbjct: 61 VQALLMAGPLAYGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG G GSV I+ Sbjct: 121 ALLRAAGIEVVEGVLADEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKGSVRIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ L +K Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEIRSPIRVILDKDLRIPLCAK 240 Query: 236 IIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT------ILVGRGV 287 +++TA P VI T + +A + + I C LL+ +L R + Sbjct: 241 VVQTAANIPTWVICSTASSKKRKKIALEQCGVTI--CSVNTNNNLLSPFAILQLLYQRKI 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347 S+L+EGGA F+++ VD +I + + I++G+ I +P + YL + F V G Sbjct: 299 NSVLLEGGAKTGKIFLDAGCVDCLICFYAPILLGKDRIKAPHFQSYLSE-FNEVEMRMLG 357 Query: 348 SDVCLEYIGKNLCLQ 362 +D ++ K LC Q Sbjct: 358 NDRLYKWRRKILCSQ 372 >gi|49475527|ref|YP_033568.1| riboflavin biosynthesis protein ribD [Bartonella henselae str. Houston-1] gi|49238333|emb|CAF27557.1| Riboflavin biosynthesis protein ribD [Bartonella henselae str. Houston-1] Length = 365 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 225/366 (61%), Gaps = 13/366 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGE 65 M+AA+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG Sbjct: 1 MAAAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI Sbjct: 61 LAHGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ ++ E L Y + ++R +TLK+A+S DN +G G G + I+G S Q H Sbjct: 121 VIEGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +LRAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P Sbjct: 181 ILRAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIP 240 Query: 245 VIIVTEND--DPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298 ++ + + +A + +++ + + +L +L RG+ S+L+EGG Sbjct: 241 TWVICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKT 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K Sbjct: 301 GEIFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKT 359 Query: 359 LCLQEL 364 LC QEL Sbjct: 360 LCSQEL 365 >gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense MSR-1] Length = 370 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 149/362 (41%), Positives = 217/362 (59%), Gaps = 10/362 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D M AAL ++ +G NP+V C+IV DG V+GRG T GG PHAE +AL Sbjct: 6 ISDGDRAHMRAALALAKRGLGNVWPNPAVGCVIVADGRVVGRGWTQPGGRPHAETEALAM 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPCSH+G++PPCA+ ++ GIRRVVV + DPD RV+GRG+ L Sbjct: 66 AGALARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQAA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V +M E +L++ R +T+K+A + D I G S ITG ++ Sbjct: 126 GLSVVTGVMAEEAAELNAGFLSKVTRGRPLVTVKLATTLDGRIATHGGESRWITGAAARQ 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 HLLRA++DAI+VG GTVLADDPELTCRL GL E SP+RI++D +L L SK++ TA Sbjct: 186 AGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRIVVDGRLRLPLTSKLVSTAN 245 Query: 242 -LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 +A ++ E + A+ + ++++ DL + + +L G+T +LVEGGA Sbjct: 246 DVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQAMRVLAESGITRVLVEGGA 305 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCL 352 + + + LVD ++ +R+ V+G G+P+ + G +L + F CV G+D+ Sbjct: 306 HLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVSFGVDHLSQMPGFECVDVRRIGADLVE 365 Query: 353 EY 354 Y Sbjct: 366 NY 367 >gi|319405760|emb|CBI79383.1| Riboflavin biosynthesis protein ribD [Bartonella sp. AR 15-3] Length = 374 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 154/368 (41%), Positives = 223/368 (60%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEE 62 D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAEV+AL Sbjct: 7 DKRFMAAAIRLAERHIGLTGENPSVGALIVQNKETGSSIVGYGVTALRGRPHAEVKALLM 66 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GATAYVTLEPCSHYG++ PC +I GI RVV+ + DPD RV G G+ L Sbjct: 67 AGPLAYGATAYVTLEPCSHYGKTSPCVNALINAGITRVVIALSDPDQRVYGCGITLLRAA 126 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ E L AYL + +R +TLK+A+S DN IG G SV I+G IS+ Sbjct: 127 GIEVTEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKSSVGISGEISRA 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL SP+R+ILD ++ LD+K+++TA Sbjct: 187 QTHILRAQNNVIMVGIGTILADDPQLDCRLPGLGMRSPIRVILDKDLRIPLDAKVVQTAA 246 Query: 242 LAPVIIV--TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295 P ++ T +A + ++I D + +L +L R + S+L+EGG Sbjct: 247 NIPTWVICGTVLSKKRKKIALEQYGVSICSVDTNNNVISPFTILQLLYQRKINSVLLEGG 306 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A F+++ VD +I + + I++G+ I +P + YL + F + G+D ++ Sbjct: 307 AKTGEIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNEIEMRMLGNDRLCKWR 365 Query: 356 GKNLCLQE 363 K LC +E Sbjct: 366 RKILCSRE 373 >gi|6572106|emb|CAB63090.1| riboflavin-specific deaminase / reductase [Bartonella henselae str. Houston-1] Length = 363 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 223/364 (61%), Gaps = 13/364 (3%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGEEA 67 AA+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG A Sbjct: 1 AAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGSLA 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI ++ Sbjct: 61 HGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIEVI 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + ++ E L Y + ++R +TLK+A+S DN +G G G + I+G S Q H+L Sbjct: 121 EGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTHIL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P Sbjct: 181 RAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIPTW 240 Query: 247 IVTEND--DPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300 ++ + + +A + +++ + + +L +L RG+ S+L+EGG Sbjct: 241 VICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKTGE 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K LC Sbjct: 301 IFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKTLC 359 Query: 361 LQEL 364 QEL Sbjct: 360 SQEL 363 >gi|121602090|ref|YP_988935.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis KC583] gi|120614267|gb|ABM44868.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis KC583] Length = 374 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 224/375 (59%), Gaps = 12/375 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + HVGLT+ NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MNKKAQDCRFMAAAIRLAERHVGLTNENPSVGALIVRNDSTGPFIVGYGVTALRGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL+ AG ++GATAY+TLEPC HYG++ PC +I+ GI RVV+ + DPD RV GR + Sbjct: 61 VQALQMAGPLSKGATAYITLEPCVHYGKTSPCVDSLIDAGIARVVIALIDPDERVCGRSI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L I +V ++E E L AYL + KR +TLK+A+S DN +G G G V I+ Sbjct: 121 ALLQAADIEVVKGVLEKESSEMLSAYLCTKKLKRCEVTLKMAISADNGVGKKGQGGVKIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G S H+LRAQ +AI+VGI T+LADDP+LTCRL GL+ SP+R+ILD ++ +D+K Sbjct: 181 GATSHTYTHILRAQHNAIMVGIRTILADDPQLTCRLQGLEMRSPIRVILDKDLRIPMDAK 240 Query: 236 IIKTALLAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTS 289 +I+TA P ++ + N + L ++ I ++ L L +L G+ S Sbjct: 241 VIQTATQVPTWVICDATLSNQSKKMKLEQYGVCVHSIEISNNFMQPLAILQLLCQLGINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+N+ VD +I + + +++GE I +P E YL + F + +D Sbjct: 301 VLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE-FNEIETKMLEND 359 Query: 350 VCLEYIGKNLCLQEL 364 + K LC Q L Sbjct: 360 RLRRWRRKILCSQGL 374 >gi|86749753|ref|YP_486249.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris HaA2] gi|86572781|gb|ABD07338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris HaA2] Length = 389 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 160/327 (48%), Positives = 207/327 (63%), Gaps = 8/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE Sbjct: 27 DRRFMQLALTLGRRGLGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALARAGEA 86 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+GRSPPCA II G+ RVV ++DP+ V G+G L GI V Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIIAAGVARVVSAIEDPNPLVGGQGHGKLRAAGIAV 146 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E HA +L R E+R H+ LK+AVS D+ I G V ITG ++ +VHL Sbjct: 147 ELGVCVEEAARDHAGHLLRVREQRPHVVLKLAVSTDDKIAADGRKPVAITGEAARARVHL 206 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LD ++ DSK++ +A P+ Sbjct: 207 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDRALRIPGDSKLVHSARATPL 266 Query: 246 -IIVTENDDPVLALAFRKKNINIIYC-DCR-----DLKKLLTILVGRGVTSLLVEGGAAV 298 ++ +E +P A +I DC+ D+ +L L +GVT LLVEGGA Sbjct: 267 WLMASEIAEPAAAARLGAAGAEVIRAPDCQRTPGLDIAAVLAALSEKGVTRLLVEGGARA 326 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 A +F+ S LVD I L R IGE G+ Sbjct: 327 ARAFVESGLVDEIWLLRGDKAIGEDGV 353 >gi|49474161|ref|YP_032203.1| riboflavin biosynthesis protein ribD [Bartonella quintana str. Toulouse] gi|49239665|emb|CAF26036.1| Riboflavin biosynthesis protein ribD [Bartonella quintana str. Toulouse] Length = 365 Score = 266 bits (679), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 151/373 (40%), Positives = 217/373 (58%), Gaps = 27/373 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALEEAGE 65 M+AA+R + H+GLT NPSV +I ++ ++G GVTA G PHAEVQAL AG Sbjct: 1 MAAAIRLAERHIGLTGENPSVGTIIARNDDSRGRCIVGYGVTAIHGRPHAEVQALHMAGP 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPCSHYG++ PC +I GI RVVV + D D RV GRG+ L GI Sbjct: 61 LARGATAYVTLEPCSHYGKTLPCVNALINSGISRVVVALTDLDKRVDGRGIALLRAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++ E L Y + +R +T K+A+S DN +G G G++ I+G S H Sbjct: 121 VVEGVLAEEAFEALCTYWCIRKLQRCAVTFKMAISADNGVGKKGQGAIKISGMTSHTHTH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +LRAQ++AILVG+GT+L DDP+L+CRL G++ SP+RIILD + LD+K+++TA P Sbjct: 181 ILRAQNNAILVGVGTILVDDPQLSCRLPGMERRSPIRIILDADLCIPLDAKVVQTAKTIP 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC-------------RDLKKLLTILVGRGVTSLL 291 ++ + + F KK+ C +L +L RG+ S+L Sbjct: 241 TWVICD-------VNFSKKSKKSALEQCGVSVYSVEMSNGYMQPLAILRLLYQRGINSVL 293 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +EGG F+N+ VD +I + + +++G+ I +P YL + F V FG+D C Sbjct: 294 LEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ-FYEVETRMFGNDRC 352 Query: 352 LEYIGKNLCLQEL 364 ++ K LC QEL Sbjct: 353 YKWRRKTLCSQEL 365 >gi|209884995|ref|YP_002288852.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans OM5] gi|209873191|gb|ACI92987.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans OM5] Length = 380 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/329 (45%), Positives = 196/329 (59%), Gaps = 8/329 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE QAL+ AGE Sbjct: 15 DHRFMQLALALGRRGQGATWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPQALQRAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSHYG+SPPC II GI RVV ++DP+ +V+G+G L GI V Sbjct: 75 ARGATLYVTLEPCSHYGKSPPCVDAIIVSGIARVVSAIEDPNPQVAGQGHVRLRDAGITV 134 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + E + R E R H+TLK+AVS D I AG V ITG + +VHL Sbjct: 135 DVGLCRDEAAQAHSGHFLRVREGRPHVTLKLAVSADGKIAAAGGKPVRITGEAANARVHL 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+SDAIL+GIGT LADDP LTCRL G++ SP+R++LD +L S+++ +A P+ Sbjct: 195 LRAESDAILIGIGTALADDPLLTCRLPGMEHRSPVRVVLDRALRLPGASRLVHSARQTPL 254 Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I+ A A ++ DL +L L + +T LLVEGGA V Sbjct: 255 WIIAAETAEAAAAARLGVAGAHLFRLPVEDRAAGLDLNAVLRTLSEQDITRLLVEGGAKV 314 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A SF+ +RLVD L + IG+ G+P+ Sbjct: 315 ASSFLAARLVDEFWLLQGAKSIGDDGLPA 343 >gi|90424160|ref|YP_532530.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisB18] gi|90106174|gb|ABD88211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris BisB18] Length = 383 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 148/329 (44%), Positives = 202/329 (61%), Gaps = 8/329 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D RFM AL R G T+ NP+V +IVKDG+++GRG T GG PHAE++AL AG Sbjct: 19 AADLRFMQLALSLGRRGQGRTAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEIEALNRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGAT YVTLEPCSH+G++PPCA +I G+ RVV ++DP+ +V+G+G L GI Sbjct: 79 LAARGATLYVTLEPCSHHGKTPPCADAVIAAGLARVVSAIEDPNPQVAGQGHARLRAAGI 138 Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 VD + + HA R+V + R H+ LK+AVS D+ I ITG ++ +V Sbjct: 139 RVDVGLGAAEAAHDHAGHFRRVRDGRPHVILKLAVSSDDKIAATPGQPTAITGEAARARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ DAIL+GI T LADDP LTCRL G+++ SP+R++LD +L DS+++ +A Sbjct: 199 HLLRAQCDAILIGIRTALADDPLLTCRLPGMEKRSPVRVVLDRALRLPGDSRLVHSARST 258 Query: 244 PVIIVTENDDPVLALAFRKKN----INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296 P+ ++ A A I++ CD DL +L L G G+T LLVEGGA Sbjct: 259 PLWLLASEIAEAAAAAKLGAAGAQIIHVADCDAMPGLDLPAVLQALAGNGITRLLVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325 VA S + + LVD + L R + IGEGG+ Sbjct: 319 RVASSLVAADLVDEVWLLRGAMTIGEGGV 347 >gi|146341344|ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS278] gi|146194150|emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS278] Length = 383 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/327 (44%), Positives = 199/327 (60%), Gaps = 8/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL AGE Sbjct: 21 DRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAGEA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G+SPPCA +I GI RVV V+DP+ V+ +G L GI V Sbjct: 81 AKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVSAVEDPNPEVAAQGHAKLRAAGIQV 140 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + S HA + R + R + LK+AVS D+ I AG V ITG ++ +VHL Sbjct: 141 EVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSADDKIAAAGSKPVAITGEAARTRVHL 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L S++I++A P+ Sbjct: 201 LRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVRVVLDPMLRLPSASRLIQSARTTPL 260 Query: 246 -IIVTENDDPVLALAFRKKNINII----YCDCRDLKK--LLTILVGRGVTSLLVEGGAAV 298 ++ +E +P A +I D L+ +L L +G+T L++EGG+ V Sbjct: 261 WLVASEVAEPATATRLGAAGAQVIRVPPQADPSALEPPAVLKALAEKGITRLMIEGGSRV 320 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 A SF+ S LVD I L R IG GI Sbjct: 321 ASSFMQSGLVDEIWLLRGPREIGADGI 347 >gi|92117361|ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14] gi|91800255|gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter hamburgensis X14] Length = 383 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/330 (45%), Positives = 203/330 (61%), Gaps = 10/330 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D RFM AL R +G ++ NP+V +IVKD +++GRG T GG PHAE +AL AG Sbjct: 19 AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGQGHARLRAAGI 138 Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 VD + + HA R++ +KR H+ LK+AVS D I AG V ITG +K +V Sbjct: 139 SVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSDGRIAAAGGVPVAITGEAAKARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ +AILVGIGTVLAD+P LTCRL G++ SP+R++LD ++ DS+++++A Sbjct: 199 HLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLRVVLDHALRIPHDSRLVRSARET 258 Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 P+ ++ + PV A+ + ++ DL +L L RGVT L+VEGG Sbjct: 259 PLWVMASDLAQAPV-AMKLGAAGVQVLRVPVAAGAPGLDLAAILRALSERGVTRLVVEGG 317 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 A VA SF+ + LVD L R IG+ G+ Sbjct: 318 ARVASSFVAAGLVDEAWLLRGPDPIGDDGV 347 >gi|307945264|ref|ZP_07660600.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4] gi|307771137|gb|EFO30362.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4] Length = 376 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 154/358 (43%), Positives = 219/358 (61%), Gaps = 15/358 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAEVQALE 61 D RFM+AA R++R +G NP VA LIV++ +V+GRG T+ G PHAEV AL Sbjct: 9 DLRFMAAAERYARRGLGEVWPNPPVAALIVRENENGQHVVVGRGRTSKPGGPHAEVNALT 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+GAT YVTLEPCSHYGR+PPC+ ++E GI+RVV+ + DP+ RV+GRG++ L + Sbjct: 69 MAGTAAKGATCYVTLEPCSHYGRTPPCSVALVEAGIKRVVIGMRDPNPRVAGRGIKMLEE 128 Query: 122 KGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V+ + L++ ++ R + R + LK+A+S+D IG G G V I+ +S Sbjct: 129 AGVEVEVGVHEVACQELYSGFIMRITQHRPKVLLKLAISKDGFIGKKGEGQVRISNPLSM 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH R+ DAI+VGIGT LADDP+LTCRL G+ E SP+R+I+D +L L SK++ TA Sbjct: 189 RHVHGFRSTYDAIMVGIGTALADDPQLTCRLPGMAERSPVRVIIDSDARLPLASKLVMTA 248 Query: 241 LLAPVIIVTENDDPVLAL-AFRKKNINII---YCDCRDLKKLLT-ILVGRGVTSLLVEGG 295 PV +V + P + A K + II DC ++T L RG+T L+VEGG Sbjct: 249 AEVPVWLVCSSTAPAERIEALSKAGVLIIRVPTTDCGIEPSVVTSALSTRGITRLMVEGG 308 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349 + +A +F+ + LVD + + I +GEGGIP LE+ + +F V GSD Sbjct: 309 SRIASAFLKAGLVDDMCIVTGDIEVGEGGIPVLHDLRLEDVVADPSFAKVEAGVIGSD 366 >gi|85715452|ref|ZP_01046433.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A] gi|85697647|gb|EAQ35523.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A] Length = 383 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 147/329 (44%), Positives = 201/329 (61%), Gaps = 8/329 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL R +G ++ NP+V +IVK+G+++GRG T GG PHAE +AL AG Sbjct: 19 AADLHFMQLALALGRRSLGASAPNPAVGAVIVKNGVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGKGHARLRAAGI 138 Query: 125 IVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + ++ HA +L R + R HI LK+A+S D MI AG V ITG +K +V Sbjct: 139 SVEVGLCADEAAHHHAGHLRRVRDGRPHIILKLAMSSDGMIAAAGGIPVAITGEAAKARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ AILVGIGTVLADDP LTCRL G++ SP R++LD ++ S+++++A Sbjct: 199 HLLRAQCSAILVGIGTVLADDPMLTCRLPGMETRSPPRVVLDHALRIPESSRLVQSAHET 258 Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGA 296 P+ I+T E + A+ + ++ DL ++L L RGVT L+VEGGA Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGVQVMRVPVAAEAPGLDLLEVLRALSERGVTRLIVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325 +A SF+ + LVD L IG+ G+ Sbjct: 319 RIAASFVAAALVDEAWLLSGPDPIGDDGV 347 >gi|298291639|ref|YP_003693578.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506] gi|296928150|gb|ADH88959.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506] Length = 370 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 215/369 (58%), Gaps = 18/369 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56 M + D M+AAL R +G T NP+V L+V++ +V+GRG T+ GG PHAE Sbjct: 1 MTKTIHDEALMAAALSVGRRELGHTWPNPAVGALVVRETGGAPVVLGRGWTSKGGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 QAL +AGE ARGAT YVTLEPCSH+G +PPC + G+ RVV ++DPD RV+GRG Sbjct: 61 PQALAQAGEGARGATLYVTLEPCSHHGLTPPCVDAVRASGVARVVAAIEDPDFRVAGRGF 120 Query: 117 QWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L + GI V+ + + HA ++ R E R H+ LK+AVS D +G+AG IT Sbjct: 121 SLLREAGIDVEVGVGAPEARLAHAGHIRRVTEGRPHVMLKLAVSADGKVGLAGRRPAAIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G +++ +VHL+R+ DA+L GIGTVLADDP LTCRL G+++ SP+RI+LD +L S Sbjct: 181 GEVARGRVHLMRSIYDAVLTGIGTVLADDPLLTCRLPGMEDRSPLRIVLDADLRLPSTSA 240 Query: 236 IIKTALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + ++ AP+ I+ D PV +A+ + DL + L +L RG+T Sbjct: 241 LARSLGTAPLWIIAAEDAPVAPEEMLVAMGVEVMRVRRRPDGGIDLNEALKLLALRGITR 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 L+VE G V+ + + LVD ++ + + +GEG + + LE + DY SD Sbjct: 301 LMVEAGPRVSTAVLREGLVDEANIFLAPVQLGEGALDA------LEGLPLSALDDYL-SD 353 Query: 350 VCLEYIGKN 358 LE+ G++ Sbjct: 354 AELEWHGED 362 >gi|91977144|ref|YP_569803.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisB5] gi|91683600|gb|ABE39902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris BisB5] Length = 396 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/333 (47%), Positives = 207/333 (62%), Gaps = 14/333 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G T+TNP+V +IVKDG+++GRG T GG PHAEV+AL AGE Sbjct: 28 DLRFMQLALTLGRRGLGRTATNPAVGAVIVKDGVILGRGWTEVGGRPHAEVEALARAGEA 87 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH GRSPPCA +I GI RVV ++DP+ V+G+G L GI V Sbjct: 88 ARGATLYVTLEPCSHVGRSPPCADAVIAAGISRVVSAIEDPNPLVAGQGHDKLRAAGIAV 147 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + + HA R+V ++R H+ LK+AVS D+ I AG V ITG ++ +VHL Sbjct: 148 DVGLCAAEAARDHAGHFRRVRDRRPHVVLKLAVSTDDKIARAGHKPVAITGEETRARVHL 207 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LDP ++ SK++ +A P+ Sbjct: 208 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDPSLRIPGGSKLVHSARQTPL 267 Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR------------DLKKLLTILVGRGVTSLLV 292 +I +E + A ++I+ R DL +L L +GVT LLV Sbjct: 268 WLIASEVAEAAAATRLGAAGAHVIHVADRPSVTDGQSRPGLDLAAVLATLSEKGVTRLLV 327 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 EGGA VA + ++ L D I L R + IG G+ Sbjct: 328 EGGARVASALVSENLADEIWLLRGETTIGADGV 360 >gi|304391942|ref|ZP_07373884.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130] gi|303296171|gb|EFL90529.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130] Length = 367 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/347 (42%), Positives = 203/347 (58%), Gaps = 8/347 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M A LR +R H GLT TNPSV L+VKDG V+GRG+TA GG PHAE AL++AG A Sbjct: 16 AEWMGACLRLARRHRGLTGTNPSVGTLLVKDGRVVGRGITAKGGRPHAERVALDQAGPNA 75 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+ AYVTLEPC+H+G +PPCAQ +I G+ V DPD RV G+G L + I V Sbjct: 76 VGSIAYVTLEPCAHHGATPPCAQALINAGVAEVHTAYIDPDHRVDGKGHAMLREAEIAVH 135 Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 SE + YLTR+ R +TLK+AVS+D M+G G V ITG +++ VH + Sbjct: 136 AGQGSEIAGSDMRGYLTRKRLGRPMVTLKLAVSRDGMLGRTGE-EVSITGPLARAMVHRM 194 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI VG GTV ADDP+LTCRL+GL+ SP R I D L+ S+++ +A PV Sbjct: 195 RAEHDAIAVGRGTVEADDPDLTCRLSGLEARSPERFIFDSAGVLTETSRLVASARTVPVH 254 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ P L + + + L ++L L RG++SL++EGGA +A SF Sbjct: 255 LISTL--PGLPEHLLASGVRHFAAEAENGHIALPEVLDDLGARGISSLMLEGGAQLASSF 312 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +N+ LVD I + +G GI SP+ + F R G + Sbjct: 313 LNAGLVDEIAFFVGAKDVGPDGIASPITLATIPAEFNAGRTLQLGPN 359 >gi|148255996|ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bradyrhizobium sp. BTAi1] gi|146408169|gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium sp. BTAi1] Length = 383 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 143/327 (43%), Positives = 199/327 (60%), Gaps = 8/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL AG Sbjct: 21 DRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRRAGAA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YV+LEPCSH+G+SPPCA +I GI RVV ++DP+ VSG+G L GI V Sbjct: 81 TKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVSAIEDPNPEVSGQGHARLRAAGIQV 140 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + S HA R++ + R H+ LK+AVS D+ I AG V ITG ++ +VHL Sbjct: 141 EVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSADDKIAAAGNKPVAITGEAARTRVHL 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L + S+++++A P+ Sbjct: 201 LRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVRVVLDPMLRLPMTSRLVQSARTTPL 260 Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAV 298 +I + +P A +I + + +L L +G+T L++EGG+ V Sbjct: 261 WMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLEPPAVLKALADKGITRLMIEGGSRV 320 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 A SF+ S LVD I L R IG GI Sbjct: 321 ASSFMQSGLVDEIWLLRGAGEIGADGI 347 >gi|182678211|ref|YP_001832357.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp. indica ATCC 9039] gi|182634094|gb|ACB94868.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp. indica ATCC 9039] Length = 401 Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 144/345 (41%), Positives = 199/345 (57%), Gaps = 23/345 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M+ AL S+ +G T+ NPSV +IVKDG ++GRG T GG PHAE +AL Sbjct: 19 PDSETDTHYMAEALALSQQGLGRTAPNPSVGAIIVKDGKIVGRGWTQPGGRPHAETEALA 78 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG+ ARGAT YVTLEPCSH+G +PPCA II G+ RVV ++DPD RVSGRG + L + Sbjct: 79 EAGDAARGATLYVTLEPCSHFGVTPPCASAIIAAGVARVVCALEDPDPRVSGRGYRMLRE 138 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC--GSVP---IT 175 GI V ++E+E + ++ R +R +TLK+A++ D + G P IT Sbjct: 139 AGIAVTHGVLEAEARRANLGHIRRVQAQRPMVTLKLAMTADGFVASTAPREGQAPRLKIT 198 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILD 225 G + VH +RAQ DAI++GIGT LADDP LT RL+G +E P RI+LD Sbjct: 199 GAAANEHVHRMRAQHDAIMIGIGTALADDPMLTVRLSGQEEMGKAEMGKVAARPRRIVLD 258 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR------DLKKL 278 H +L L S +++TA P +++T +D A+A R+ ++ + + DL Sbjct: 259 SHLRLPLQSHLVQTAADYPTLVLTRDDASAEAMARLREASVVVETLESAQSTPSLDLSAA 318 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L L G+T + EGG VA S I D +IL S ++G G Sbjct: 319 LQRLASLGLTRIFSEGGPRVAESLIGQHAADEVILLESPAILGAG 363 >gi|154248198|ref|YP_001419156.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus Py2] gi|154162283|gb|ABS69499.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus Py2] Length = 383 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 217/366 (59%), Gaps = 18/366 (4%) Query: 2 PVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHA 55 PV+S D RFM+ AL+ + +G T NPSV ++V+ DG ++G TA G PHA Sbjct: 10 PVTSPEDDERFMAEALKVGQSGLGRTWPNPSVGAVVVQHVDGRPHIVGAAATAPTGRPHA 69 Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AL +AGE ARG+T YVTLEPCSH+GR+PPCA +I G+RRVV ++DPD RV GRG Sbjct: 70 EPIALAQAGEAARGSTLYVTLEPCSHHGRTPPCAGAVIAAGVRRVVAAIEDPDHRVKGRG 129 Query: 116 LQWLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L GI V + +E + HA ++ R E R H+ LK+AVS D +AG + Sbjct: 130 VARLRAAGIWVTVGVGAEQALADHAGHIRRVTEGRPHVLLKMAVSADGKAALAGPRPAVV 189 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 TG ++ + HL+RA +DAILVG+GTV ADDP LTCRL G ++ SP+R++LD + L+S Sbjct: 190 TGPEARARAHLMRAHADAILVGLGTVTADDPMLTCRLEGHEDRSPVRLVLDSGLDIPLES 249 Query: 235 KIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYC-----DCR-DLKKLLTILVGRGV 287 +++TA PV ++ D P A A ++ + ++ + R L +L +L G+ Sbjct: 250 ALVRTASDVPVWVIAAEDAPAERAAALMERGVEVLRAPRGGIEGRLHLPAVLKLLGLLGI 309 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRR 343 T L+VEGG A A +F+ + LVD + ++ S +++G + PL + F V R Sbjct: 310 TRLMVEGGPATAAAFLEAGLVDEVAVFHSPVLLGPDAYHALAGRPLGRLFAPVGFAEVER 369 Query: 344 DYFGSD 349 G+D Sbjct: 370 AELGAD 375 >gi|75675917|ref|YP_318338.1| riboflavin biosynthesis protein RibD [Nitrobacter winogradskyi Nb-255] gi|74420787|gb|ABA04986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter winogradskyi Nb-255] Length = 387 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 148/329 (44%), Positives = 198/329 (60%), Gaps = 8/329 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL R +G ++ NP+V +IVKDG+++GRG T GG PHAE +AL AG Sbjct: 19 TVDLHFMQLALALGRRSLGASAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP VSG+G L G+ Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVSGQGHARLRAAGV 138 Query: 125 IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + + HA R+V ++R HI LK+AVS D I AG V ITG ++ + Sbjct: 139 AVEIGLCAAEAAHHHAGHFRRVRDRRPHIILKLAVSSDGKIAAAGGVPVAITGEAARARA 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ AILVGIGTVLADDP LTCRL G++ SP+R++LD ++ S+++++A Sbjct: 199 HLLRAQCSAILVGIGTVLADDPLLTCRLPGMETRSPLRVVLDQALRIPESSRLVQSARET 258 Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGA 296 P+ I+T E + A+ ++ DL +L L GVT L+VEGGA Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGARVMRVPGAAGAPGLDLVAVLRALSESGVTRLVVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325 VA SFI + LVD L R IG+ G+ Sbjct: 319 RVAASFIAAALVDEAWLLRGPDPIGDDGV 347 >gi|299135084|ref|ZP_07028275.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2] gi|298590061|gb|EFI50265.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2] Length = 377 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 155/366 (42%), Positives = 212/366 (57%), Gaps = 25/366 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE AL+ AG+ Sbjct: 13 DHRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPVALQRAGKA 72 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G+SPPCA II GI RV+ ++DP+ V+G+G L GI V Sbjct: 73 AKGATLYVTLEPCSHHGKSPPCADAIIAAGIARVMSAIEDPNPEVAGQGHARLRDAGIQV 132 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + + HA + R E+R H+TLK+AVS D I AG V ITG + +VHL Sbjct: 133 DVGLYRDEAARAHAGHFLRVREQRPHVTLKLAVSADGRIAAAGHKPVQITGEAANARVHL 192 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+DAIL+GIGT +ADDP LTCRL G++ SP+R++LD +LS +S++I +A P+ Sbjct: 193 LRAQNDAILIGIGTAMADDPMLTCRLPGMEACSPVRVVLDRALRLSGNSRLIHSARATPL 252 Query: 246 IIVTENDDP-------------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 ++ V LA + + DL+ +L L +G+T LLV Sbjct: 253 WLIASETAEAAAATKLGAAGAHVFHLAVDDHQVGL------DLEAVLHTLSAQGITRLLV 306 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 EGGA VA SF+ + LVD L++ IG G+ + L+ LE ++ + FG Sbjct: 307 EGGAKVASSFLKAGLVDEFWLFQGMKNIGSDGL-AALDGQQLETAIASGWLADETERFGD 365 Query: 349 DVCLEY 354 D Y Sbjct: 366 DRLTVY 371 >gi|209964642|ref|YP_002297557.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW] gi|209958108|gb|ACI98744.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW] Length = 379 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 142/332 (42%), Positives = 202/332 (60%), Gaps = 8/332 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AAL + +G NPSV C++V++G V+GRGVT GG PH E +AL +A Sbjct: 13 SDQDRAHMRAALTLAARGLGRVWPNPSVGCVLVREGRVVGRGVTGAGGRPHGETEALRQA 72 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ARGATAYV+LEPC+H+GR+PPC + ++ G+ RVVV +DPD RVSG GL L G Sbjct: 73 GEQARGATAYVSLEPCNHHGRTPPCTEALMAAGVARVVVACEDPDPRVSGGGLARLRAAG 132 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++E+E + + R E R +TLK+A S D I S ITG +++ Sbjct: 133 LEVASGLLEAEAQELNAGFFLRIREGRPLVTLKLATSLDGRIATRTGESRWITGPVARAW 192 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LRA DAILVGIGT LADDPELTCRL G+ + SP+RI+LD +L L S++++TA Sbjct: 193 GHGLRASHDAILVGIGTALADDPELTCRLPGMADRSPVRIVLDSRLRLPLTSRLVRTADR 252 Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGG 295 PV ++T D +P AF +++I + L + L L RG+T +L EGG Sbjct: 253 TPVWLITRPDAAEPARMAAFADCGVDLIPVEPGPGGEIPLPQALRTLAARGITRVLAEGG 312 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A +A S + L D + +R+ +++G +P+ Sbjct: 313 ARLAASLLRDGLADRLEWFRAGLLLGGDALPA 344 >gi|158422887|ref|YP_001524179.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571] gi|158329776|dbj|BAF87261.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571] Length = 384 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 205/365 (56%), Gaps = 29/365 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQALEE 62 D M+ AL + +G T NPSV ++V+ ++GR TA G PHAE AL + Sbjct: 19 DEALMAEALAVGQLGLGRTWPNPSVGAVVVRPTSAGPQILGRAGTAPAGRPHAEPLALAQ 78 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YVTLEPCSH+GR+PPCA +I GI RVV V+DPD RV GRG+ + Sbjct: 79 AGDAARGATLYVTLEPCSHFGRTPPCADAVIAAGITRVVAAVEDPDPRVRGRGVARMRAA 138 Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V + +E + HA +++R R H+ LK+AVS D G+ G ITG ++ Sbjct: 139 GLWVTVGVGAERALEDHAGHISRVTRGRPHVLLKMAVSADGKAGLEGPRPAAITGEEARA 198 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VHL+RA +DAI+VGIGTVLADDP+LT RL G++ SP+RI+LD +L +++TA Sbjct: 199 RVHLMRAHADAIMVGIGTVLADDPQLTVRLPGMEGRSPVRIVLDGDLRLPTTCGLVRTAE 258 Query: 242 LAPVIIVTENDDPVLALAFRKK-----NINIIYC--------DCRDLKKLLTILVGRGVT 288 PV + D P A R+K + ++ D + KLL +L GVT Sbjct: 259 QVPVWAIAAEDAP----AEREKALVDAGVQVLRAPRAASGRLDLPAVMKLLGLL---GVT 311 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRD 344 L+VEGG VA + ++ LVD + + RS +G GG+ + PL F V R Sbjct: 312 RLMVEGGPQVAAALLDEGLVDEVAVLRSPDALGAGGLDALAGRPLARLTEPVGFAVVERT 371 Query: 345 YFGSD 349 G D Sbjct: 372 ELGRD 376 >gi|115524816|ref|YP_781727.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisA53] gi|115518763|gb|ABJ06747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodopseudomonas palustris BisA53] Length = 383 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 149/329 (45%), Positives = 197/329 (59%), Gaps = 8/329 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL R +G T NP+V +IVKDG+++GRG T G PHAEV+AL AGE Sbjct: 21 DLRYMQLALALGRRGLGNTWPNPAVGAVIVKDGVIVGRGWTQPRGRPHAEVEALARAGEA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+G++PPC +IE G+ RVV ++DP+ V+G+G L GI V Sbjct: 81 ARGATLYVTLEPCSHHGKTPPCCDAVIEAGLARVVAAIEDPNPEVAGQGHAKLRAAGIKV 140 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + HA R++ + R H+ LK+A+S D+ I AG V ITG + QV L Sbjct: 141 DVGCGAVDAARDHAGHFRKIRDGRPHVILKLALSSDDKIAAAGRKRVAITGAAANAQVQL 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A P+ Sbjct: 201 LRAQCDAILVGIGTVLADDPELTCRLPGMAARSPVRVVLDRALRIPGASKLVLSARQTPL 260 Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++ A A + DL +L +L RGVT L+VEGGA V Sbjct: 261 WLIAAETAEAAAAARLGAAGAQVLRLPVEPTARGLDLNAVLKLLAERGVTRLMVEGGAQV 320 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A +F+ VD I L+R IG+ GIP+ Sbjct: 321 ASTFVAQNFVDEIWLFRGSQPIGDDGIPA 349 >gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Moorella thermoacetica ATCC 39073] gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella thermoacetica ATCC 39073] Length = 376 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 136/329 (41%), Positives = 193/329 (58%), Gaps = 6/329 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA FM+ AL +R +G TS NP+V +IV+DG V+G G G PHAE+ AL AGE+ Sbjct: 5 DAIFMARALELARQGLGRTSPNPTVGAVIVRDGQVVGEGYHQKAGTPHAEIHALRAAGEK 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC HYGR+PPC + II GI+RVV + DP+ RV+G G + LSQ GI V Sbjct: 65 ARGATLYVTLEPCCHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQAGIEV 124 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + A++ R +TLK+A++ D I + ITG ++ + H Sbjct: 125 ETGLLADEARRLNEAFIKYITTGRPWVTLKMALTLDGKIATRTGAARWITGPAARQRAHE 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVGIGTVLADDPELT RL + +R+ILD H +L L ++++ AP Sbjct: 185 LRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAIRVILDSHLRLPLSARVVNLQSEAPT 244 Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++VT P A + + ++ D + LL L R VTS+LVEGGA V Sbjct: 245 LVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAWQPLLAELARRQVTSILVEGGAEVNA 304 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + + + +VD ++ + + + G P+P+ Sbjct: 305 TALAAGIVDKVVAFIAPKIFGGREAPAPV 333 >gi|217978262|ref|YP_002362409.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2] gi|217503638|gb|ACK51047.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2] Length = 370 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 132/329 (40%), Positives = 198/329 (60%), Gaps = 12/329 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AA+ +R +G+ + NP+V LIVKDG+V+ RG T GG PHAE +AL +AG++ Sbjct: 7 DERFMAAAIALARRGLGVCAPNPAVGALIVKDGVVLARGWTQAGGRPHAEAEALRQAGDK 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +RG+T YVTLEPCSH+G++PPCA+ +I GI RV ++DPD RV+GRG + L G+IV Sbjct: 67 SRGSTLYVTLEPCSHHGKTPPCAEAVIASGIARVASAIEDPDPRVAGRGHELLRAAGLIV 126 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQ 182 + ++ + + ++ R + R ITLK+A++ D + AG + P ITG + Sbjct: 127 RTGVCAQAALRANLGHVLRVTQNRPLITLKLAMTADGFV--AGGPNEPRLSITGEAANGA 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VHL+RA DAIL+G+GT LADDP LT RL GL++ P+RI+LD ++S S+++ TA Sbjct: 185 VHLMRAMYDAILIGVGTALADDPLLTVRLPGLEQRRPLRIVLDSALRISPASRLVATARS 244 Query: 243 APVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 P +I+ P A +N+ + DL+ L +L RG+T + E G Sbjct: 245 HPTLIIAGEAAPAANEARLVAENVAVARVPTDGGGRLDLRAALGLLASRGLTRIFCEAGP 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325 +A + + D II+ SQ + G+ Sbjct: 305 TLAEALLREDAADDIIMLTSQKRLARPGL 333 >gi|218531424|ref|YP_002422240.1| riboflavin biosynthesis protein RibD [Methylobacterium chloromethanicum CM4] gi|218523727|gb|ACK84312.1| riboflavin biosynthesis protein RibD [Methylobacterium chloromethanicum CM4] Length = 376 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A LA I + D DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +GE GG+P + L + + V +G D + Sbjct: 313 LADTLAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 Y 354 Y Sbjct: 373 Y 373 >gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum AMB-1] gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum AMB-1] Length = 375 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/361 (39%), Positives = 209/361 (57%), Gaps = 11/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M AAL +R +G NP+V C+IVKDG V+GRG T GG PHAE +AL AG Sbjct: 13 IDLGHMRAALALARRGLGTVWPNPAVGCVIVKDGRVVGRGWTQPGGRPHAETEALAMAGS 72 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GAT YVTLEPC+H+G++ PCA ++ G+ RVVV V DPD RV+G+G+ L GI Sbjct: 73 AALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGIP 132 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ +E + R R +TLK+A + D I S ITG +++ H Sbjct: 133 VTEGVLHAEAAELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGDQARSAAH 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LLRA++DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA P Sbjct: 193 LLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVATANDVP 252 Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++T D D A+ ++++ DL+ L L GVT +LVEGGA + Sbjct: 253 TWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLELALQALGESGVTRVLVEGGAHL 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCLEY 354 + + + + LVD ++ +R+ ++G G+P+ + G +L + +F V G DV Y Sbjct: 313 SAALLRAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRPVGDDVMETY 372 Query: 355 I 355 I Sbjct: 373 I 373 >gi|218680684|ref|ZP_03528581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea [Rhizobium etli CIAT 894] Length = 307 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 129/223 (57%), Positives = 164/223 (73%), Gaps = 1/223 (0%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 V CLIVKD +V+G+ VTA GG PHAE QAL EAGE ARGATAYVTLEPCSH+G++PPCA+ Sbjct: 1 VGCLIVKDSVVVGQAVTAVGGRPHAEPQALAEAGEAARGATAYVTLEPCSHHGKTPPCAE 60 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKR 149 +I G+ RVV+ V DPD RVSGRG+ L + GI VD ++E+EG+ L AYLTRQ + R Sbjct: 61 ALIAYGVARVVISVTDPDPRVSGRGIAMLREAGIEVDAGVLEAEGRRSLAAYLTRQTKNR 120 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIGT ++DDP LT Sbjct: 121 PYVTLKLAVSADGMIGREGEGQVAITGPEARAEVQALRAETDAILVGIGTAISDDPLLTV 180 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 R GL+ SP+RI+LDP L L S+++ TA PVI+V + Sbjct: 181 RTPGLEAQSPIRIVLDPSLALPLTSRLVATAREVPVILVASEE 223 >gi|58578775|ref|YP_196987.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] gi|58417401|emb|CAI26605.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] Length = 370 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 10 DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L + V Sbjct: 70 AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDANVEV 129 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M++E + + +++ R IT+KIA + D I + S IT +++ VH Sbjct: 130 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA + P Sbjct: 190 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 249 Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301 I+T + ++ L A N + D D L + + +LV + G+T L VEGG+ + Sbjct: 250 YILTNSIEETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDV 356 >gi|58616834|ref|YP_196033.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Gardel] gi|58416446|emb|CAI27559.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Gardel] Length = 370 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 10 DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ ++DPD+RVSG G++ L + V Sbjct: 70 AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIAINDPDMRVSGNGIKLLRDANVEV 129 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M++E + + +++ R IT+KIA + D I + S IT +++ VH Sbjct: 130 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA + P Sbjct: 190 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 249 Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301 I+T + + L A N + D D L + + +LV + G+T L VEGG+ + Sbjct: 250 YILTNSIKETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 304 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQCSYNFKRVDTLYFDGDV 356 >gi|57238845|ref|YP_179981.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] gi|57160924|emb|CAH57829.1| riboflavin biosynthesis protein RibD [Ehrlichia ruminantium str. Welgevonden] Length = 365 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/353 (39%), Positives = 205/353 (58%), Gaps = 15/353 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 5 DKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDNVKHL 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L + V Sbjct: 65 AKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDANVEV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M++E + + +++ R IT+KIA + D I + S IT +++ VH Sbjct: 125 RCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRTWVHK 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA + P Sbjct: 185 QRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTADVIPT 244 Query: 246 IIVTEN-DDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGR-GVTSLLVEGGAAVAHS 301 I+T + ++ L A N + D D L + + +LV + G+T L VEGG+ + Sbjct: 245 YILTNSIEETKLGAA------NYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILITE 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 299 LLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDV 351 >gi|68171296|ref|ZP_00544696.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Sapulpa] gi|88658608|ref|YP_506994.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Arkansas] gi|67999277|gb|EAM85926.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Sapulpa] gi|88600065|gb|ABD45534.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Arkansas] Length = 360 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 205/356 (57%), Gaps = 19/356 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 +D +FMS ALR +R +G NP+V C++V G+V+GRG T GG PHAEV AL AG Sbjct: 4 YDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGH 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A+G+T YVTLEPCSHYG++ PCA +I+ G++R+V+ DPDVRVSG G++ L GI Sbjct: 64 LAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGID 123 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M E + + +++ R IT+K+A + D I + S IT +++N VH Sbjct: 124 VKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R+ DAI+VG T++ D+P L RL GL+ +SP+RI++D K+ IIKT+ + P Sbjct: 184 KQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSDVIP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTIL-VGRGVTSLLVEGGAAVAHS 301 I+T ND P L + + D +D L+ + +L V G+T L VEGG + Sbjct: 244 TYILT-NDVPQTKLG----KASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITE 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS-------PLEEGYLEKNFMCVRRDYFGSDV 350 + ++L+D II RS + G IPS L+ GY NF V YF D+ Sbjct: 299 LLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGY---NFRAVDTLYFKDDI 351 >gi|254469111|ref|ZP_05082516.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062] gi|211960946|gb|EEA96141.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062] Length = 381 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 137/368 (37%), Positives = 216/368 (58%), Gaps = 23/368 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEEAG 64 RFM+AAL + G T NP V ++ KD +++G+G T G HAEV A+++AG Sbjct: 17 RFMAAALSYGIRAKGRTWPNPPVGAILTKDFGDGPVIVGQGATLPPGGSHAEVLAIKDAG 76 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GATAYVTLEPC+HYGR+ PCA+ ++ G+ RVV DP+ V+GRG + L + G+ Sbjct: 77 EHAKGATAYVTLEPCAHYGRTGPCARALVAAGVSRVVYGTADPNPAVAGRGKKILEEGGV 136 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E + + +++R + +R + LK+AVS+D IG G G V I+ +S+ V Sbjct: 137 EVLIGVLEKECREAVRGHISRILNERPFVQLKMAVSKDGYIGKRGAGQVAISSPLSRQLV 196 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RAQ DAI+VGIGTVL DDPEL+ RL G+ SP ++ D ++ L SK+++ A Sbjct: 197 HAMRAQMDAIVVGIGTVLEDDPELSVRLPGMAHRSPQPVVFDSQARIPLSSKLVQNAESN 256 Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCDC-RD----LKKLLTILVGRGVTSLLVEGGAA 297 + +V ++ P + A ++ + +I DC R+ L K L L G++ ++VEGGA Sbjct: 257 SLWVVIGDNAPDHRVSALEREGVTVIVNDCLRNGKVCLDKALDALYMHGLSQIMVEGGAE 316 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG-IP------SPLEEGYLEKNFMCVRRDYFGSDV 350 +AH + LVD +++++ +G G +P L++GY N +R + G D+ Sbjct: 317 LAHGLLQQDLVDELLIFQGTSTVGSDGLLPFGFEGLESLQDGY---NKQMLR--HVGEDL 371 Query: 351 CLEYIGKN 358 Y K Sbjct: 372 LWRYTPKE 379 >gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola sp. JR] gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR] Length = 385 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 209/364 (57%), Gaps = 19/364 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G TS NP V +IVKDG VIG+G G PHAEV AL EAGE Sbjct: 5 DVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALREAGEL 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +RGAT YVTLEPCSHYGR+PPC++ +I G+ RVVV ++DP+ VSG+G+Q + + GI V Sbjct: 65 SRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREAGIQV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +ME E + ++ +R + +K A++ D I A S ITG ++ VHL Sbjct: 125 EVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARRLVHL 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DAILVGIGTVL D+P LTCRL Q +P+RIILD +L +D ++KT APV Sbjct: 185 WRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIEQAPV 244 Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+V+ P A K ++ R DL LL L R +TSL VEGGA V Sbjct: 245 IVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGATVNA 304 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SF+ +RL D + + + ++G P P+ G + FM D CL KN+ Sbjct: 305 SFLKNRLADKTVWFVAPKIVGGPQAPGPV--GDMGIQFM---------DECLNI--KNMS 351 Query: 361 LQEL 364 +Q++ Sbjct: 352 VQDI 355 >gi|300022486|ref|YP_003755097.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans ATCC 51888] gi|299524307|gb|ADJ22776.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans ATCC 51888] Length = 368 Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 137/320 (42%), Positives = 185/320 (57%), Gaps = 9/320 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALE 61 S+FD M+ ALR + +G T NPSV +I + G ++ RGVTA GG PHAE QA+ Sbjct: 7 SAFDEEMMAIALRMAERGLGATMPNPSVGAVIADETTGEILARGVTAPGGRPHAETQAIA 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG+ RGAT YVTLEPCSH+GR+ PCA+ I+ G++R VV ++DPD RVSGRGL L Sbjct: 67 AAGDRVRGATIYVTLEPCSHHGRTGPCAEAIVAAGLKRAVVAIEDPDPRVSGRGLDKLRD 126 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPITGFIS 179 G+ V R + +E + ++ R E+R T+K+A+ I G + +T ++ Sbjct: 127 AGLEVVRGVGAAEARRITRGHIVRITERRPFTTVKLALDGSGEIARGNGVSPIWVTAEMA 186 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + LLRA DAILVG TV DDPELTCRL GL + SP RIIL + +K++++ Sbjct: 187 RAHGMLLRAHYDAILVGSATVRDDDPELTCRLPGLIDRSPARIILSRSLDIPAGAKLVRS 246 Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294 A P ++T D DP + I I L ++ LVGRGVT LLVEG Sbjct: 247 ASGVPTWMMTAPDSDPQKREQLTSHGVEIHDIPIVGQSLWLPAIMEALVGRGVTRLLVEG 306 Query: 295 GAAVAHSFINSRLVDSIILY 314 G + SF + LVD +ILY Sbjct: 307 GPRIWRSFAEASLVDEVILY 326 >gi|163793213|ref|ZP_02187189.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199] gi|159181859|gb|EDP66371.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199] Length = 369 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 144/328 (43%), Positives = 196/328 (59%), Gaps = 7/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ ALR + VG T+ NP V C++V+DG ++GRG T GG PHAE AL +AG Sbjct: 7 DDRWMALALRLAHSAVGDTAENPPVGCVLVRDGRIVGRGRTGSGGRPHAEAVALAQAGNA 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA+VTLEPC+H+GR+PPCA ++ G+ RVV + DPD RV G G L + G+ V Sbjct: 67 ARGATAFVTLEPCAHHGRTPPCADALVAAGVVRVVAAIGDPDPRVDGGGFATLRRAGVSV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + +L+R + R +TLKIA S D I A S ITG ++ H+ Sbjct: 127 SVGVAAQQAATATTGFLSRVQDARPFVTLKIATSLDGRIATASGASRWITGTAARRHAHV 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DAILVGIGT LADDP LTCR GL+E SP+R++LD +L +DS + +TA P Sbjct: 187 VRARQDAILVGIGTALADDPALTCRTPGLEERSPVRVVLDSGLRLPVDSDLARTARWVPT 246 Query: 246 IIVTE---NDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++T AL + + D D+ +L L GRG+ +LVEGGA VA Sbjct: 247 WVITSVGAGSGHARALTDLGVEVFGVARDAGGRPDVPAVLATLAGRGIGRVLVEGGATVA 306 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ + VD I YR+ I+IG G P+ Sbjct: 307 RSFVAADAVDEIQWYRAPILIGGDGRPA 334 >gi|240139918|ref|YP_002964395.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens AM1] gi|240009892|gb|ACS41118.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens AM1] Length = 376 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A LA I + D DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +GE GG+P + L + + V +G D + Sbjct: 313 LADALAAHDLIDACTLITGSVTLGEAGGLPVLGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 Y 354 Y Sbjct: 373 Y 373 >gi|84502762|ref|ZP_01000881.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis HTCC2597] gi|84389157|gb|EAQ01955.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis HTCC2597] Length = 367 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 138/330 (41%), Positives = 189/330 (57%), Gaps = 7/330 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D RF+S AL R +G T NPSV C+IV+DG ++GRG TA GG PHAE QAL +A Sbjct: 3 AAADRRFLSLALALGRRGLGRTWPNPSVGCVIVRDGRIVGRGWTAPGGRPHAEPQALAQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYV+LEPC+H+G++PPC + +I GI RVV + D D RV+G+G + L G Sbjct: 63 GEAARGATAYVSLEPCAHHGKTPPCTEALIAAGIARVVAPLADTDPRVAGQGFERLRWAG 122 Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + E HA + R R +TLK+A S D I A S ITG ++ Sbjct: 123 IEVSTGLLGEEAARDHAGFFLRNELGRPLVTLKLASSFDGRIATATGDSRWITGAEARRA 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH +R + DA++VG GT ADDP LT R G P+RI++ L L S++ +TA Sbjct: 183 VHAMRMRHDAVMVGAGTARADDPSLTVRDMGATRQ-PVRIVVSRRLDLPLMSRLARTAKE 241 Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 PV + D DP L + + CD D + +L L G+T + EGG A Sbjct: 242 VPVWLCHGPDADPALHRTWADLGARLFACDVAGGHLDPRSVLGALGEAGLTRVFCEGGGA 301 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +A S +N+ LVD++I + + IG G P+ Sbjct: 302 LAASLLNADLVDTLIGMTAGVAIGAEGQPA 331 >gi|254562342|ref|YP_003069437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens DM4] gi|254269620|emb|CAX25591.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens DM4] Length = 376 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 141/361 (39%), Positives = 196/361 (54%), Gaps = 11/361 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A LA I + D DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +G+ GG+P + L + + V +G D + Sbjct: 313 LADALAAHDLIDACTLITGSVTLGDAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 Y 354 Y Sbjct: 373 Y 373 >gi|73666745|ref|YP_302761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ehrlichia canis str. Jake] gi|72393886|gb|AAZ68163.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ehrlichia canis str. Jake] Length = 361 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 137/349 (39%), Positives = 197/349 (56%), Gaps = 7/349 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FMS ALR +R +G NP+V C++V GI++GRG T GG PHAEV AL AG Sbjct: 5 DKKFMSLALRIARRGLGNVFPNPAVGCIVVNRGIIVGRGWTQVGGRPHAEVVALNNAGYL 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++ PCA +I+ GI+R+V+ DPDVRVSG G++ L I V Sbjct: 65 AKGATVYVTLEPCSHYGKTGPCALKLIDAGIKRMVIAARDPDVRVSGNGIKLLRDANIDV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + + +++ R IT+K+A + D I ++ S IT +++N VH Sbjct: 125 KCDLMYKEAQELNVGFFFTKIKGRPFITVKLASTLDGKIALSNGNSKWITNQLTRNWVHK 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DA++VG TV+ DDP L R+ GL+ +SP+RI++D K+ I+KTA + P Sbjct: 185 QRSMYDAVMVGSNTVVHDDPMLNTRIPGLECYSPVRIVIDRFGKICTYHNIVKTADIIPT 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I+T DD + K + + D + I + G+T L VEGG+ + + S Sbjct: 245 YILT--DDTSKTKLGKAKYLIVTGTDNFLKNAMKVISMKIGITRLFVEGGSILITELLKS 302 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350 +LVD II RS + G + S + L NF + YF DV Sbjct: 303 QLVDRIIWCRSNKIFGANAVSSVGDLNILTLQNLYNFRKIDTLYFDDDV 351 >gi|85706317|ref|ZP_01037411.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217] gi|85669090|gb|EAQ23957.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217] Length = 364 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 147/363 (40%), Positives = 202/363 (55%), Gaps = 13/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DARFM+ AL R +G + NP+V C+IV+ ++GRG TA GG PHAE QAL + Sbjct: 1 MSGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGRHIVGRGWTAPGGRPHAETQALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYV+LEPC+H+G++PPCA +I GI RVV DD D RV+GRG L Sbjct: 61 AGDLARGATAYVSLEPCAHHGKTPPCADALIAAGITRVVAPFDDNDPRVAGRGFARLRAA 120 Query: 123 GIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V + + G+ L +L R R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVRTGVLADVAGR-DLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA+ DA++VG GT ADDP LT R G + P+R+++ L L S + +TA Sbjct: 180 RVVHTLRARHDAVMVGAGTARADDPMLTVRDMGARRQ-PVRVVVSRRLDLPLLSNLARTA 238 Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 P+ + N DP L A+R ++ C+ R D +L L G+T + EGG Sbjct: 239 KDVPLWLCHGPNVDPALVAAWRGIGARLVSCEVRLGQVDPASVLKALGAEGLTRVFCEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVC 351 A+A S +++ LVD +I + + IG G+P L LE+ F V G DV Sbjct: 299 GALAASLLSAGLVDELIGFTAGFAIGAEGLPGIGALGLARLEEAARFRLVETRSLGGDVM 358 Query: 352 LEY 354 + Sbjct: 359 HRW 361 >gi|255003850|ref|ZP_05278651.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Virginia] Length = 360 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 142/360 (39%), Positives = 196/360 (54%), Gaps = 19/360 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AGE Sbjct: 4 DERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ Sbjct: 64 AAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVE 123 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +++ + + + + ++R IT+K+A + D I + IT +++ VH Sbjct: 124 VKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSF 302 I T+NDD A R I C+ D L + L G+T L VEGG + Sbjct: 244 TYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTEL 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----------NFMCVRRDYFGSDVC 351 + LVD I R+ V GE G+ S L L FM D F S VC Sbjct: 300 LKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTVDIFSSFVC 359 >gi|56416383|ref|YP_153457.1| riboflavin biosynthesis protein [Anaplasma marginale str. St. Maries] gi|222474753|ref|YP_002563168.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Florida] gi|254994610|ref|ZP_05276800.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Mississippi] gi|56387615|gb|AAV86202.1| riboflavin biosynthesis protein [Anaplasma marginale str. St. Maries] gi|222418889|gb|ACM48912.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Florida] Length = 371 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/328 (40%), Positives = 188/328 (57%), Gaps = 8/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AGE Sbjct: 4 DERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ Sbjct: 64 AAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVE 123 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +++ + + + + ++R IT+K+A + D I + IT +++ VH Sbjct: 124 VKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSF 302 I T+NDD A R I C+ D L + L G+T L VEGG + Sbjct: 244 TYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTEL 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330 + LVD I R+ V GE G+ S L Sbjct: 300 LKRGLVDQFIWCRANRVCGEQGVESILN 327 >gi|294083733|ref|YP_003550490.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663305|gb|ADE38406.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum marinum IMCC1322] Length = 366 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 142/359 (39%), Positives = 193/359 (53%), Gaps = 23/359 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ +R VG + NP V C+I+ G +IG G TA G PHAE AL AG+ A G Sbjct: 1 MRYAISEARKAVGRAAENPPVGCVIIAASGQLIGAGHTARTGRPHAETVALAMAGQRAHG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPC+H+G++PPCA +IE GIRRVV+ DPD RV+G+G+ L GI ++ Sbjct: 61 GTAYVTLEPCAHHGQTPPCATALIEAGIRRVVIACQDPDRRVNGKGVTMLRAAGIDVITD 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + +L R V KR +T+K A S D I + V +T + VH+LR+ Sbjct: 121 IGSDMAYSVMQGFLHRMVHKRPLVTIKTATSLDGGIALGDGRKVWLTSPPMRRYVHVLRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VII 247 +SDAIL GIGT+LADDPE+TCRL GL+ SP R ILD + +KI++ P VI Sbjct: 181 KSDAILTGIGTILADDPEMTCRLPGLEHDSPSRFILDSQLRCPPGAKILQNNNAVPTVIF 240 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEGGA 296 E P +A K I+ DL+K+L L GV +LLVE G+ Sbjct: 241 CAETASPDARIALEKSGAVIVPMAVDKAQDDGLQKRLDLQKILRYLGDAGVNNLLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---------PLEEGYLEKNFMCVRRDYF 346 ++ S I LVD I +SQ ++G IP+ P + Y E + + RD Sbjct: 301 SIVTSIIADDLVDVIHWTQSQHLLGSDAIPAISPLKLVALPEQTRYTETHHQQIGRDRL 359 >gi|269958267|ref|YP_003328054.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel] gi|269848096|gb|ACZ48740.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel] Length = 365 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 133/326 (40%), Positives = 184/326 (56%), Gaps = 6/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D RFMS ALR +R +G T NP+V C+I G ++GRG TA GG PHAEV AL AGE Sbjct: 4 DERFMSIALRLARRGLGNTYPNPTVGCVITNGAGSIVGRGWTAMGGRPHAEVVALRHAGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A G+TAYVTLEPC H G++ PC +I G+RRVV+ DPD RVSG+G + LS+ G+ Sbjct: 64 AAAGSTAYVTLEPCCHRGQTGPCTAALINAGVRRVVIAALDPDERVSGKGAKSLSEAGVE 123 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +++ + + + + R +T+K+A + D I + IT +++ VH Sbjct: 124 VKLGVLQQQAEELNAGFFYSKTRSRPFVTVKLATTLDGKISLPSGDERWITNELTRKWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLRAHHKVVATSDVVP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303 I T+ND+ A R + L + ++ L G+T L VEGG + + Sbjct: 244 TYIATDNDNHETLCAARYLKVG---GKGDFLARTMSALTEELGITRLFVEGGGVLVTELL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 RLVD I R+ V G G S L Sbjct: 301 KRRLVDQFIWCRAAKVCGTGAAESIL 326 >gi|163852584|ref|YP_001640627.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens PA1] gi|163664189|gb|ABY31556.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens PA1] Length = 371 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 198/365 (54%), Gaps = 19/365 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 8 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A GAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 68 EAAHGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 127 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 128 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 188 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 247 Query: 244 PVIIVTENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A LA I + D DL L L RG+T + EGG A Sbjct: 248 PTLVLTGRGAPAHARRMLASFGVEIAFVPIDAAGRIDLPAALKALAERGLTRICSEGGPA 307 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPS-------PLEEGYLEKNFMCVRRDYFGSD 349 +A + L+D+ L + +GE GG+P+ L +G L + RDY G D Sbjct: 308 LADALAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGLLS---VVETRDY-GPD 363 Query: 350 VCLEY 354 + Y Sbjct: 364 TAVTY 368 >gi|149202273|ref|ZP_01879246.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035] gi|149144371|gb|EDM32402.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035] Length = 364 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 137/332 (41%), Positives = 194/332 (58%), Gaps = 9/332 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ DARFM+ AL R +G + NP+V C+IV+ G ++GRG T+ GG PHAE QAL + Sbjct: 1 MTGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGGRIVGRGWTSPGGRPHAEPQALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYV+LEPC+H+G++PPCA+ +I GI RVV DD D RV+GRG L Sbjct: 61 AGELARGATAYVSLEPCAHHGQTPPCAEALIAAGIARVVAPFDDNDPRVAGRGFAMLRAA 120 Query: 123 GIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V M E G+ L +L R R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVRTGVMAEQAGR-DLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA+ DA++VG GT ADDP+LT R G + P+R+++ L L S + +TA Sbjct: 180 RVVHGLRARHDAVMVGAGTARADDPQLTVRDMGARRQ-PVRVVVSRRLDLPLLSNLARTA 238 Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 P+ + + DP L A++ ++ C+ D +L L G+T + EGG Sbjct: 239 RDVPLWLCHGPHVDPALVKAWQGIGARLLPCEVTQGQVDPASVLHALGAEGLTRVFCEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A+A S +++ LVD ++ + + IG G+P Sbjct: 299 GALAASLLSAGLVDELVGFTAGFAIGAEGLPG 330 >gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex HEL-45] gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex HEL-45] Length = 370 Score = 228 bits (582), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 134/326 (41%), Positives = 183/326 (56%), Gaps = 7/326 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DARFM+ AL R G NP+V C+IV+ +IGRG T GG PHAE QAL +AGE Sbjct: 8 DARFMALALSLGRRGQGNVWPNPAVGCVIVQGTRIIGRGWTHPGGRPHAEPQALAQAGEA 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+G++PPCAQ +I G+ RVV+ D D RV+GRG+ L GI V Sbjct: 68 ARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAAGIDV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 E+E + + R R +TLK+A S D I S IT ++ H Sbjct: 128 SVGEREAEARADHAGFFCRTDLGRPMLTLKLANSFDGRIATGTGESQWITDAPARRLTHA 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GT DDP LT R G+ H P R+++ L L ++ +TA P+ Sbjct: 188 MRARHDAVMVGAGTARKDDPSLTVRDLGV-AHQPARVVVSRRLDLPLMGQLARTAADIPL 246 Query: 246 IIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+ D DP L + ++ C R D +L L G G+T + EGG+A+A Sbjct: 247 ILCHGTDADPALVRTWSDLGATLLLCAARGAQLDPTDVLRQLAGHGLTRIFCEGGSALAA 306 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326 S I + LVD ++ + + +VIG G+P Sbjct: 307 SLIEADLVDRLVGFTAGLVIGAEGLP 332 >gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 367 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 138/330 (41%), Positives = 188/330 (56%), Gaps = 3/330 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL Sbjct: 1 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L Sbjct: 61 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V + +E + A+LT KR +TLK A++ D I S ITG ++ Sbjct: 121 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++ Sbjct: 181 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 VI V+E DP R ++ +L +LL L TSLLVEGGAAV Sbjct: 241 APTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLDWLGAHDCTSLLVEGGAAVN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF++ VD I + + +++G G P+P+ Sbjct: 301 WSFLSGGYVDRICAFIAPMLMGGGEAPTPV 330 >gi|46201728|ref|ZP_00208227.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 358 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 207/356 (58%), Gaps = 11/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AAL +R +G NP+V C+IV+DG V+GRG T GG PHAE +AL AG A GA Sbjct: 1 MRAALALARRGLGTVWPNPAVGCVIVRDGRVVGRGWTQPGGRPHAETEALAMAGRAANGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+H+G++ PCA +I G+ RVVV V DPD RV+G+G+ L GI + + + Sbjct: 61 TVYVTLEPCAHHGKTAPCADALIAAGVSRVVVAVQDPDSRVAGKGIDRLRVAGIPVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + R R +TLK+A + D I S ITG ++ HLLRA+ Sbjct: 121 LHAEASELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGEQARAAAHLLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA P ++T Sbjct: 181 TDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVSTANEVPTWLLT 240 Query: 250 END-DPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D D A+ ++++ DL+ L L GVT +LVEGGA ++ + + Sbjct: 241 LEDCDSDRREAYEDAGVDVVEVSPGPDGAVDLELALQALGESGVTRVLVEGGAHLSAALL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG--YLEK--NFMCVRRDYFGSDVCLEYI 355 + LVD ++ +R+ ++G G+P+ + G +L + +F V G DV YI Sbjct: 301 RAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRALGDDVMETYI 356 >gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16] gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16] Length = 366 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 190/330 (57%), Gaps = 12/330 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 ARGAT YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I+ + ++F H T K +T+K A S D I A S IT ++ Sbjct: 124 EVGILKEEADELNRMFFHYIAT----KTPFVTIKYACSLDGKIATATGESKWITSSAARE 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRAQ DAILVG+ TV+AD+P+LT R+ G Q +P+R+ILD + LD+ ++ Sbjct: 180 DVHRLRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKE 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 II A + + + I+ D++++L +L + +TSL VEGG+ + Sbjct: 239 AETWIITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIH 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF+ S +V+ ++ Y + +IG P+P+ Sbjct: 299 DSFLRSGMVNEVVAYMAPKLIGGREAPTPV 328 >gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum thermopropionicum SI] gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum thermopropionicum SI] Length = 376 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 140/359 (38%), Positives = 199/359 (55%), Gaps = 14/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL + G TS NP V ++VK+G+V+G+G G PHAE+ AL+EAG E Sbjct: 3 DRYYMNMALELAARARGRTSPNPMVGAVLVKNGVVVGQGYHMKAGTPHAEIIALKEAGNE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YV LEPC HYGR+ PCA +IE G+ RVV + DP+ V+G GL+ + + G+ V Sbjct: 63 ARGATLYVNLEPCCHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAGLEV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +ME E + A++ +R + K A+S D I S ITG ++ VH Sbjct: 123 TLGVMEDEARELNEAFIKYVTTRRPFVLAKAALSLDGKIAARTGRSKWITGPAARAYVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244 LR DAILVGIGT+LADDP LT RL G P+R+ILD + L++++IK AP Sbjct: 183 LRDWYDAILVGIGTILADDPSLTARLPGGGGRDPVRVILDSLARTPLNARVIKQKSKAPT 242 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VI VT P A ++ ++ + DL +L+ IL + +TS+L+EGGA V S Sbjct: 243 VIAVTAGAPPGRVKALQEAGAQVVVVNSGPRVDLPELMRILAEKEITSVLIEGGAEVHGS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL-------EEGYLEKNFMCVRRDYFGSDVCLE 353 + +VD + + + +IG P P+ G LE + V R D+C+E Sbjct: 303 AFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEGVDDPGGALELERIKVSR--LDQDICIE 359 >gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Magnetococcus sp. MC-1] gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Magnetococcus sp. MC-1] Length = 376 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 10/328 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D +M ALR + +G T NP+V C+IVK+ +IGRG G PHAEV+AL Sbjct: 4 PDAGKDRAYMDHALRLAARGLGRTRPNPTVGCVIVKEDRIIGRGWHRKAGGPHAEVEALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPCSH+GR+PPC + +I+ GIRRVV ++DP+ VSG+G Q L Q Sbjct: 64 MAGEAARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQRLKQ 123 Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G++V + E ++ + ++TR + R +TLK A S D S ITG ++ Sbjct: 124 AGVVVQVGVREEAAQMLIRPFITRILHNRPMVTLKSAASLDGKTATRERHSQWITGEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + H LR D IL GI TVLADDP LTCRL G ++ P+R+++D KLS ++ +I Sbjct: 184 KRGHRLRDTHDVILTGIQTVLADDPRLTCRLKGGRD--PIRVVVDSSLKLSENAGVINPD 241 Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293 APV + T P AL + +I C DL L+ L R +TS+L E Sbjct: 242 STAPVWVATTLRAPEEKRALFALLPGVEVIMCAEDDTGRVDLYDLMEKLAKREITSVLAE 301 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G ++ + ++ RLVD I L+ + ++IG Sbjct: 302 AGGVLSGALLDKRLVDRIALFMAPMLIG 329 >gi|126733197|ref|ZP_01748944.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2] gi|126716063|gb|EBA12927.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2] Length = 369 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 129/325 (39%), Positives = 190/325 (58%), Gaps = 8/325 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DARFM+ AL R +G NP+V C+IV D ++GRG TA GG PHAE AL +AG Sbjct: 6 DARFMALALMLGRRGMGRVWPNPAVGCVIVNDCNIVGRGWTADGGRPHAEAIALAQAGSA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPC+H+G++PPC+ +I+ + RVV+ DDPD RV+GRG+ L G+ V Sbjct: 66 ADGATVYVTLEPCAHHGKTPPCSNALIKANVARVVIAADDPDERVNGRGIAMLRDAGVQV 125 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + ++ HA +L+R + R +TLK+A + D I A S ITG ++ VH+ Sbjct: 126 DCGVGNKAAARDHAGFLSRITQGRPFVTLKLAGTLDGRIATATGESQWITGPEARRMVHM 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GTV ADDP LT R G+ H P+R+++ K+ + S++ +TA PV Sbjct: 186 MRARHDAVMVGAGTVRADDPSLTVRGLGIV-HQPVRVVVSRALKIPVTSQLAQTARDTPV 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + V + K + C D ++T L +G+T + EGG A S Sbjct: 245 WLCHGPEADV--AGWTAKGAVSLPCATAANQVDPHAIMTTLADQGITRVFCEGGGMFAAS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 +N+ LVD ++++ + IG G P Sbjct: 303 LLNAGLVDQLVVFSAGAAIGAEGTP 327 >gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mahella australiensis 50-1 BON] gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mahella australiensis 50-1 BON] Length = 363 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 127/321 (39%), Positives = 183/321 (57%), Gaps = 5/321 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL +R G T+ NP V +IVK G +IG G G PHAE+ AL EAGE ARG Sbjct: 6 FMQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREAGEGARG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 +T YVTLEPCSH+GR+PPCA +++ G++ VV+ ++DP+ RV+GRG+ L Q GI ++ Sbjct: 66 STVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKVITG 125 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E + ++ + K A++ D I A S IT +S+ VH R Sbjct: 126 IMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVHWWRY 185 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + A+L GIGTVLADDP LT RL + E P+RII D K LDS ++ ++ Sbjct: 186 RVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAPTIMA 245 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + DP F+ K ++I D + DL +L+ L R + S+L+EGG +A S I Sbjct: 246 TSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRELHKREIDSVLIEGGPTLAASAIE 305 Query: 305 SRLVDSIILYRSQIVIGEGGI 325 LVD +++ + +IG G+ Sbjct: 306 EGLVDKAMVFIAPKLIGGKGL 326 >gi|313902290|ref|ZP_07835695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter subterraneus DSM 13965] gi|313467441|gb|EFR62950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter subterraneus DSM 13965] Length = 443 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 135/332 (40%), Positives = 190/332 (57%), Gaps = 10/332 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G T NP V +IV+DG+V+G G G PHAEV+AL A ++ Sbjct: 40 DRHFMRRALDLAARAGGRTHPNPMVGAVIVRDGVVVGEGYHRRAGEPHAEVEALRSARDQ 99 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC H+GR+PPC + I+ G+RRVVV + DPD RV+GRGL L+Q G+ V Sbjct: 100 ARGATLYVTLEPCCHHGRTPPCTEAILAAGLRRVVVAMVDPDPRVAGRGLSVLAQAGVEV 159 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E++ + L+ AY+ +V R +T K A++ D I A S ITG ++ VH Sbjct: 160 AVGVEADRALRLNEAYVVHRVLGRPMVTAKYAMTLDGRIATARGESRWITGPRARRWVHR 219 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAILVG+GTVLADDP LT R + P+R+ILD H + D+++I+ A +P Sbjct: 220 LRDRVDAILVGVGTVLADDPSLTVRWH-PGGRDPVRVILDSHARTPPDAQVIRAARHSPA 278 Query: 246 ---IIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAA 297 + VT V + ++ + LL L RG+ LLVEGGA+ Sbjct: 279 PTWVAVTPQAPAVRTARLEAAGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGGAS 338 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 V SF + LVD ++ + + ++G P P+ Sbjct: 339 VHGSFFAAGLVDRVVAFIAPKLVGGRAAPGPI 370 >gi|126738756|ref|ZP_01754452.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6] gi|126719937|gb|EBA16644.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6] Length = 370 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 188/327 (57%), Gaps = 7/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL R G NP+V C+IVK+G ++GRG T GG PHAE QAL +AGE Sbjct: 10 DARYMALALSLGRRGQGKCWPNPAVGCVIVKEGRIVGRGWTQPGGRPHAEPQALAQAGEA 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+G +PPCAQ +I+ G+ VV ++D D RVSG+G + L GI V Sbjct: 70 ARGATAYVTLEPCSHFGETPPCAQALIDAGVSHVVAAIEDSDPRVSGQGFEMLRMAGITV 129 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E HA + + + R +TLK+A S D I S ITG ++ +VH Sbjct: 130 RTGVLAEEAGLDHAGFFYKTEQGRPWVTLKLASSFDGRIATGSGQSKWITGPEARRRVHA 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA++VG GT ADDP LT R G+ E P+R+++ H L L ++ +TA PV Sbjct: 190 MRACHDAVMVGGGTARADDPSLTVRDLGVAEQ-PVRVVISRHLDLPLMGQLARTAKEVPV 248 Query: 246 IIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + V + A+ ++ C D +L L G+T + EGG+A+A Sbjct: 249 WLCHGAGADVERIQAWEGLGARLLPCAAHGVQLDPNDILQQLGAAGLTRVFCEGGSALAA 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 S + LVD +I + + + IG G+PS Sbjct: 309 SLLAFDLVDELIGFTAGLGIGAEGLPS 335 >gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas flueggei ATCC 43531] gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas flueggei ATCC 43531] Length = 386 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 137/330 (41%), Positives = 187/330 (56%), Gaps = 3/330 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL Sbjct: 20 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 79 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L Sbjct: 80 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 139 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V + +E + A+LT KR +TLK A++ D I S ITG ++ Sbjct: 140 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 199 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++ Sbjct: 200 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 259 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 VI V+E D R ++ +L ++L L R TSLLVEGGAAV Sbjct: 260 APTVIAVSERADQRRVDRLRACGAEVVTLGAERVELPRVLDWLGARDCTSLLVEGGAAVN 319 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF+ VD I + + +++G G P+P+ Sbjct: 320 WSFLAGGYVDRICAFIAPMLMGGGEAPTPV 349 >gi|302390233|ref|YP_003826054.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermosediminibacter oceani DSM 16646] gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermosediminibacter oceani DSM 16646] Length = 373 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/326 (40%), Positives = 196/326 (60%), Gaps = 6/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL ++ G TS NP V ++VKDG ++G G G PHAEV+AL +A E Sbjct: 4 DVFFMRRALDLAKKGRGTTSPNPMVGAVVVKDGEIVGEGYHRKAGEPHAEVEALAQAAER 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGA YV LEPC HYGR+PPCA II G++RVV + DP+ V+G+G++ L + GI + Sbjct: 64 ARGAELYVNLEPCCHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E K ++ + + + KIA S D I MA S ITG ++ + H Sbjct: 124 VVGVLEEEAKKLNEVFIKYIITGKPFVVAKIAQSFDGKIAMASGESRWITGEPARVKAHE 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+ DAI+VG+GTV+ADDP LTCRL + +P+RI++D ++ D+++++ + Sbjct: 184 LRSWYDAIMVGVGTVMADDPLLTCRLP-EKRKNPVRIVVDSGARMPPDARMLRCEGGRVI 242 Query: 246 IIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + TE D A +++ + +I + R DL +L+ IL G G+TS+LVEGG+ + S Sbjct: 243 LATTERADSERVSALKERGVEVIKVPPAEGRVDLSRLMEILGGMGITSVLVEGGSTLTSS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 I LVD ++++ + +VIG GI S Sbjct: 303 LIKGNLVDKLLVFVAPVVIGGEGIDS 328 >gi|188582604|ref|YP_001926049.1| riboflavin biosynthesis protein RibD [Methylobacterium populi BJ001] gi|179346102|gb|ACB81514.1| riboflavin biosynthesis protein RibD [Methylobacterium populi BJ001] Length = 359 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/356 (39%), Positives = 195/356 (54%), Gaps = 12/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL R ++G T NPSV ++V DG ++G+ VTA GG PHAE AL AGE ARG Sbjct: 1 MRLALALGRRNLGRTWPNPSVGAVVVTPDGRIVGQAVTAPGGRPHAEPLALAMAGEAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 AT YVTLEPCSH+GR+PPC + I G+ RVV ++DPD RV+GRG L GI V+ Sbjct: 61 ATLYVTLEPCSHHGRTPPCTEATIRSGVARVVTAIEDPDPRVAGRGHAGLRAAGIAVETG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + +R + R + LK+A ++D + + ITG I+ VHL RA Sbjct: 121 LLREEAARDHRGHFSRVTKGRPSLHLKLARTRDGFAAPSTGERLKITGAIADGAVHLWRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A P +++ Sbjct: 181 HADAIMVGIGTARADDPSLTVRLPGLTERSPLRIVLDSTLRLNPASHLVRGARDLPTLVL 240 Query: 249 TENDDPVLA---LAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T P A LA I + D + DL L L RG+T + EGG A+A + Sbjct: 241 TGRGAPAHARRMLASFGVEIAFVPTDAQGRIDLPAALAALAERGLTRICSEGGPALADAL 300 Query: 303 INSRLVDSIILYRSQIVIGE-GGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L+D+ L + +GE GG+P+ L + +F V G D Y Sbjct: 301 AAHDLIDACTLITGAVALGEAGGLPALGPNLARRLADGSFATVETRDLGPDTATTY 356 >gi|88607630|ref|YP_504671.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ] gi|88598693|gb|ABD44163.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ] Length = 364 Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 132/326 (40%), Positives = 186/326 (57%), Gaps = 11/326 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+ AL +R +G NP+V C++++DG+V+GRG T GG PHAE+ AL+ AG Sbjct: 4 DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPC H G + PC +I G+ RVV+ V DPD RVSG+G+ L GI V Sbjct: 64 AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM-AGCGSVPITGFISKNQVH 184 +++ + + + +V R IT K+A + D I GC IT +++ VH Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRW-ITNDLTRKWVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA DAILVG TV+ADDP L CRL GL++HSP+R+++D KL KI+ TA P Sbjct: 183 KQRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLLAHHKIVCTAGTIP 242 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301 IVT+ND + +N+ I D L+ ++ L + G+T L VEGG + Sbjct: 243 TYIVTDNDPQCVF-----ENVKYIKVDGGTEFLENMVRALTAQLGITRLFVEGGGILITE 297 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 + +L+D I R+ + G G+ S Sbjct: 298 LLKKKLIDRFIWTRANKISGSKGLNS 323 >gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168] gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 127/323 (39%), Positives = 191/323 (59%), Gaps = 8/323 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R VG TS NP V ++V+D ++G G Y G PHAEV ALEEAGE+ Sbjct: 4 DIYYMEKALTLARKGVGYTSPNPMVGAVVVRDDKIVGEGHHRYYGGPHAEVYALEEAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YV LEPCSHYG++PPC IIE G++RVV+ + DP+ RVSG+G++ L + GI V Sbjct: 64 AFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGIEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + + ++ + + LK+A + D + + S +TG ++ VH Sbjct: 124 TVGVLEEKARNLNEVFIKNITNRMPFVYLKMAQTLDGYLATSSGDSRWVTGKKARQYVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAILVGIGTVL DDP LT RL+ + ++I+LD K+ L + I+ APV Sbjct: 184 LRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIKIVLDSKLKIPLTANILNQENDAPV 243 Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298 IIV + D + K++ ++ D + +K+LL L +G++SLLVEGG V Sbjct: 244 IIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIPIKELLINLNKKGISSLLVEGGGRV 303 Query: 299 AHSFINSRLVDSIILYRSQIVIG 321 +SF+ VD ++ + + ++G Sbjct: 304 NYSFLKEGFVDKMLFFIAPKLLG 326 >gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5] gi|6225948|sp|O66534|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5] Length = 356 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 186/322 (57%), Gaps = 4/322 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M AL ++ G T NP+V ++VK+G ++G G G PHAEV AL + Sbjct: 2 IREIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GAT YVTLEPC+H+GR+PPC II GI+RVVV DP+ +SG+G++ L Sbjct: 62 AGEKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD + E E + + T ++R +ITLK A + D + S IT S+ Sbjct: 122 GIEVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H+LR ++ A+LVG+ TV+ DDP LT R E P+RIILDP ++ L +K++ T Sbjct: 182 VAHILRREATAVLVGVNTVIKDDPHLTVRFVP-TEKQPVRIILDPELEVPLSAKVLNTE- 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP I++T+ ++ A ++K + ++ +LK +L L + L+VEGG S Sbjct: 240 EAPTIVITKKENEK-AEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVEGGPRTLTS 298 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ D I+++ + ++GEG Sbjct: 299 FLKEGFFDRIVVFIAPKIMGEG 320 >gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus thermodenitrificans NG80-2] gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus thermodenitrificans NG80-2] Length = 359 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/326 (39%), Positives = 188/326 (57%), Gaps = 12/326 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+ARGA Sbjct: 1 MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----I 125 T YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI I Sbjct: 61 TVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEVGI 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + ++F H T K +T+K A S D I A S IT ++ VH Sbjct: 121 LKEEADELNRMFFHYIAT----KTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHR 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TV+AD+P+LT R+ G Q +P+R+ILD + LD+ ++ Sbjct: 177 LRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETW 235 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 II A + + + I+ D++++L +L + +TSL VEGG+ + SF+ Sbjct: 236 IITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 295 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 S +V+ ++ Y + +IG P+P+ Sbjct: 296 RSGMVNEVVAYMAPKLIGGREAPTPV 321 >gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 365 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/318 (39%), Positives = 184/318 (57%), Gaps = 6/318 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L +R G TS NP V C++VKD ++G G G PHAEV AL A + +RG Sbjct: 14 YMRIVLSLARRGTGRTSPNPRVGCVVVKDDKIVGTGFHRCPGSPHAEVMALSMAKDMSRG 73 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YV LEPC HYGR+PPCA I+E GI+RV + +DP +V GRG+++L G+ +V Sbjct: 74 ATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEYLRSHGVEVVSG 133 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + +L E R ITLK A+S D + ++ S ITG S + HLLRA Sbjct: 134 VLSDEARWLNRGFLKVFEEGRPWITLKAAMSLDGDVALSDGSSRWITGRSSLKRSHLLRA 193 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++DA+LVGIGT+L DDPELT R ++ P++IILD H ++ +++K+ K + V Sbjct: 194 EADAVLVGIGTILKDDPELTVRY--VEGEHPLKIILDTHLRIPINAKVFKEGDVLVVTSK 251 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + V + R + I D R D+K+++ L V LLVEGG V SF ++ Sbjct: 252 GSSPQKVEEIISRGAGVMQIPTDSRGFLDIKEMVCKLPSMDVHYLLVEGGPNVLSSFFDA 311 Query: 306 RLVDSIILYRSQIVIGEG 323 +L D + L+ + ++G G Sbjct: 312 KLFDEMALFYAPKIMGRG 329 >gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2] gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2] Length = 368 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 132/363 (36%), Positives = 200/363 (55%), Gaps = 17/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +MS AL + G T NP V C++VKDG +IG G G HAEV AL+ AG+E Sbjct: 6 DSYYMSLALELAAKASGQTGINPVVGCVVVKDGRIIGVGTHLKRGTGHAEVHALQMAGDE 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPCSHYG++PPC + II RVVV DP+ +V+GRG+ L ++GI V Sbjct: 66 AEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIEV 125 Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E ++ + + R ++TLK A + D I S ITG ++ QVH Sbjct: 126 EVGLLEEQSRSMNEKFNKYITSRLPYVTLKTASTLDGKIASHTGDSRWITGSTAREQVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q +AI+VGIGT+LADDP+LT R H P+RII+D +L LD++++ L + Sbjct: 186 LRHQHEAIMVGIGTLLADDPQLTTRAAVPAIH-PVRIIVDSQLRLPLDARVVTDGLARTI 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-------CRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++ + DP A + + +I C ++KL + +G S+L+EGG + Sbjct: 245 VLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMRKLGELEIG----SILLEGGGKL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + + + L+D I++Y + +IG P EK + D+ V +E G++ Sbjct: 301 NGAMLEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEAIELDH----VKVEMAGED 356 Query: 359 LCL 361 +C+ Sbjct: 357 ICI 359 >gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484] gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484] Length = 353 Score = 223 bits (569), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 197/352 (55%), Gaps = 11/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R GLT NP+V C++VKDG +I G G PHAEV AL +AG+ A+ + Sbjct: 1 MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKAGQNAKDS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPCSHYGR+PPC IIE G++RVVV DP+ +V G G++ L GI VD + Sbjct: 61 TLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + + + R +ITLK A S D + S IT S+ H LRA+ Sbjct: 121 LEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIV 248 + AILVG+ TV+ DDP LT R L E P+R++LDP+ + L + + + T+ ++ Sbjct: 181 ATAILVGVNTVVKDDPLLTVRAF-LWERQPIRVVLDPYLRTPLQANLMVDTSAKTILVTC 239 Query: 249 TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ +D V L ++++ +C DL+ L+ + + + L+VEGGA FI Sbjct: 240 SQKEDKVKKL--EDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIE 297 Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDY-FGSDVCLEY 354 L D I+++ ++IG G + SP E ++ + RR + G DV +EY Sbjct: 298 EGLWDRIVVFLGPLLIGNGIRVRSPGAEKLMDAIPLRKRRLWQLGEDVAIEY 349 >gi|255002722|ref|ZP_05277686.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Puerto Rico] Length = 364 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/324 (40%), Positives = 185/324 (57%), Gaps = 8/324 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 MS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AGE A G Sbjct: 1 MSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGEAAAG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ V Sbjct: 61 STVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVEVKLG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ + + + + ++R IT+K+A + D I + IT +++ VH RA Sbjct: 121 VLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVHKQRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P I Sbjct: 181 MHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVPTYIA 240 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSR 306 T+NDD A R I C+ D L + L G+T L VEGG + + Sbjct: 241 TDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTELLKRG 296 Query: 307 LVDSIILYRSQIVIGEGGIPSPLE 330 LVD I R+ V GE G+ S L Sbjct: 297 LVDQFIWCRANRVCGEQGVESILN 320 >gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 369 Score = 223 bits (568), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/327 (39%), Positives = 186/327 (56%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL +L+ +L G G ++VE GA Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM 5159] gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM 5159] Length = 382 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 196/363 (53%), Gaps = 16/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ +R G + NP+V +IV++G V+G G T G PHAE+ AL+ AGE Sbjct: 8 DRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVALQRAGER 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC+HYGR+PPC + I++ GIRRVV + DP V+GRG L Q G+ V Sbjct: 68 ARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLRQAGVDV 127 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E+E ++A YL R E +TLK A++ D I S ITG ++ H Sbjct: 128 TVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEARRYAHQ 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-----EHSPMRIILDPHFKLSLDSKIIKTA 240 LR Q DAILVG+ TVL DDPELT RL+ HSP+R+++D + ++++ + Sbjct: 188 LRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSARLLDSR 247 Query: 241 LLA-PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 L A ++I TE P A K + + R DL L +L RG+ +LVEGG Sbjct: 248 LPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINRVLVEGG 307 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLE----KNFMCVRRDYFGSDV 350 V S L D+++ + + +++G P PL EG VR G D+ Sbjct: 308 GRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVRQVGDDL 367 Query: 351 CLE 353 +E Sbjct: 368 VIE 370 >gi|260425443|ref|ZP_05779423.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45] gi|260423383|gb|EEX16633.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45] Length = 363 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 135/327 (41%), Positives = 190/327 (58%), Gaps = 7/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M+ ALR R +G NP+V C+IVKDG VIGRG TA GG PHAE QAL +AG Sbjct: 4 DIRHMAHALRLGRRRMGQCWPNPAVGCVIVKDGRVIGRGATAPGGRPHAEPQALAQAGVA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC+H+G++PPCA+ +++ G+ RVV + D D RVSG+G + L + GI V Sbjct: 64 ARGATVYVTLEPCAHHGKTPPCAEALVKAGVARVVAPLADSDPRVSGKGFEHLRRHGIEV 123 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E HA + + E R +TLK+A S D I A S ITG ++ VH Sbjct: 124 TTGVLAEEAARDHAGFFLKVGEGRPLVTLKLANSFDGRIATATGESQWITGPEARRVVHG 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA DA++VG GT +DDP LT R G + P+R+++ + L SK+ TA PV Sbjct: 184 LRAAHDAVMVGAGTARSDDPALTVRGWG-EVRQPVRVVVSRLIDVPLMSKLASTARQVPV 242 Query: 246 IIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + +D P A++ +I C+ R D LL L +G+T + EGG +A Sbjct: 243 WLAHGSDAAPATRKAWQSCGAKLIPCEIRAGRVDPHGLLRELGEQGLTRVFCEGGGQLAA 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 S +++ LVD ++ + + + +G G P Sbjct: 303 SLLSADLVDELVGFTAGLALGAEGRPG 329 >gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans DS-1] gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans DS-1] Length = 372 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 139/333 (41%), Positives = 194/333 (58%), Gaps = 11/333 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQALE 61 +DA+FM AL + +G + NP+V C++V+D V+GRG T GG PHAE +AL Sbjct: 5 YDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAETEALA 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG ARGAT YV+LEPCSH+G++ PCA+ +I+ G+ RVV + DP+ V+GRG L Sbjct: 65 RAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFAALEA 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + + ++ + EKR +TLKIA S D I S ITG ++ Sbjct: 125 NGIEVTENVCAADAHHLNEGFFLTMSEKRPLVTLKIASSLDGYIATHEGHSQWITGDRAR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + HLLRA DAI+VG T + DDPELTCRL GL + SP+RII D +L L SK+++ A Sbjct: 185 ERGHLLRATHDAIMVGSATAIVDDPELTCRLPGLGDRSPIRIIADGRLRLPLTSKLVRDA 244 Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEG 294 PV I+T D AF + +I + +++ L + RGVT LLVEG Sbjct: 245 SKTPVWILTLPGGDGQRRKAFEDCGVTLIEVEAGEGGIMNMRAALEQIAARGVTRLLVEG 304 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 G+ +A S + SRLVD I +R+ +IG G P+ Sbjct: 305 GSRLAASLVLSRLVDRIEWFRAPKLIGGDGYPA 337 >gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 362 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/352 (35%), Positives = 199/352 (56%), Gaps = 5/352 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL ++ GLT NP+V C++V +G ++G G G PHAEV ALE+AGE+ Sbjct: 3 DVGYMSLALSLAKRRKGLTHPNPTVGCVVVNEGEIVGLGYHEGAGHPHAEVVALEQAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G+T YVTLEPC+H+GR+PPC +I GIR+ VV V DP+ V G+G++ L + G+ V Sbjct: 63 AKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLDV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E + + T KR ++TLK+A + D + S I+ S+ H Sbjct: 123 EVGVLEEEARELNEDFFTFITMKRPYVTLKLAQTLDGKVATPSGDSKWISSPESRRFAHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+++ A+LVG+ T L D+P LT R P+RI++DP ++ +DS ++ +A Sbjct: 183 LRSEATAVLVGLNTFLRDNPSLTIRHIPFGRQ-PLRIVIDPELEIPMDSNLVSDG-MAQT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++V DP + ++Y + +L +LL L R V LLVEGGA F+ Sbjct: 241 LVVFSRRDPAKESELLGAGVQLLYMEKIELGELLKELASRDVLHLLVEGGAYTVSQFLKE 300 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDY-FGSDVCLEYI 355 L D ++++++ V+G+G S L + + +RR++ G D EY+ Sbjct: 301 GLWDRLVVFQAPRVMGDGISLSGLGVDRVNDCLKLKIRREHALGEDRVFEYV 352 >gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM 11109] gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM 11109] Length = 362 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/317 (40%), Positives = 181/317 (57%), Gaps = 6/317 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + VG TS NP V ++V+DG ++GRG G PHAEV+AL +AG +A GA Sbjct: 1 MALALKLAARGVGCTSPNPMVGAVVVRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPC+HYG++PPC + I+ GIRRVV+ DP+ V+G G +L KG++V + Sbjct: 61 TLYVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLVQSGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + G A+ + + K A S D I S ITG ++ VH LR Q Sbjct: 121 LAKAGSRLNEAFFKAMTIGQPFVIAKAAASLDGKIATRTNDSQWITGAPARTWVHRLRHQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAILVG+GTV+ADDP+LT RL Q P+R++LD +L L++K++ AP +V Sbjct: 181 VDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLRLPLNAKVLTQISAAPTWMVC 240 Query: 250 ENDDPVLAL-AFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P + A ++ +I +L+ LL IL R + SLLVEGGA V +F + Sbjct: 241 TPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGERRIQSLLVEGGAEVQGAFFD 300 Query: 305 SRLVDSIILYRSQIVIG 321 + LVD L+ + IG Sbjct: 301 AGLVDKFHLFLAPKFIG 317 >gi|42520555|ref|NP_966470.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410294|gb|AAS14404.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila melanogaster] Length = 360 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 184/327 (56%), Gaps = 12/327 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCIIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +M+ E K + T + R I K+A + D I S IT ++N VH Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR-GVTSLLVEGGAAVA 299 ++T + + + KNIN + + + LK + LV G+T LLVEGG + Sbjct: 243 WVITNKE-----VEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLI 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 + L+D +I+ RS ++G P Sbjct: 298 TELLKCNLIDRLIICRSGKILGNDATP 324 >gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halanaerobium praevalens DSM 2228] Length = 379 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/330 (39%), Positives = 192/330 (58%), Gaps = 15/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL+ + VG TS NP V +IVK+G +IG G G HAEV AL +AG + Sbjct: 8 DQKYMDRALKLAALAVGKTSPNPLVGAVIVKNGEIIGEGYHQKYGAQHAEVNALAKAGFK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA +V LEPCSH+G++PPC Q II G++RVVV + DP+ +V+GRG++ L + GI V Sbjct: 68 AEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKAGIKV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ ++ K +L + + LK A + D I + S IT ++ + H Sbjct: 128 EIGLLAAKAKKLNEIFLKYITSELPFVYLKKAQTLDGYIATSSSDSKWITNEQARKEGHK 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAILVGIGT+LADDP LT RL + P+RIILDP ++ +D++II+ A Sbjct: 188 LRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRIILDPLLEIPIDAQIIEQKSEAET 247 Query: 246 IIVTEND-DPVLALAFRKK--------NINIIYC-----DCRDLKKLLTILVGRGVTSLL 291 +I+T + P A+A KK + II + DLKK+L L + + S+L Sbjct: 248 LIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVDANNYFDLKKILKYLHQQKIASIL 307 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VEGGA ++HSF+ +L+D + + + G Sbjct: 308 VEGGAKLSHSFLAQKLIDKFYYFIAPKIYG 337 >gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC 23970] gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC 23970] Length = 369 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/326 (38%), Positives = 184/326 (56%), Gaps = 7/326 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRTFATLRQ-PARIVLDSRLRLPQNSHLLTDGQS 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 +I E D+ L+ + ++ I+ D + DL +L+ +L G ++VE GA Sbjct: 242 PTLIATLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGAK 301 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 302 LTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|58699421|ref|ZP_00374173.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|225630417|ref|YP_002727208.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi] gi|58534061|gb|EAL58308.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|225592398|gb|ACN95417.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi] Length = 360 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/327 (39%), Positives = 184/327 (56%), Gaps = 12/327 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +M+ E K + T + R I K+A + D I S IT ++N VH Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR-GVTSLLVEGGAAVA 299 ++T + + + KNIN + + + LK + LV G+T LLVEGG + Sbjct: 243 WVITNKE-----VEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLI 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 + L+D +I+ RS ++G P Sbjct: 298 TELLKCNLIDRLIICRSGKILGNDATP 324 >gi|114771641|ref|ZP_01449045.1| riboflavin biosynthesis protein RibD [alpha proteobacterium HTCC2255] gi|114547713|gb|EAU50603.1| riboflavin biosynthesis protein RibD [alpha proteobacterium HTCC2255] Length = 365 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/327 (40%), Positives = 184/327 (56%), Gaps = 15/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL G T NP V C+IVK+ +VIGRG T GG PHAE AL++A + Sbjct: 7 DERWMRLALSLGARGAGRTWPNPFVGCVIVKNSLVIGRGYTQQGGRPHAETVALQQASND 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A +T YVTLEPC+H G++PPC +I+ GI+RVV+ DPD RVSG+G+Q L GI V Sbjct: 67 AENSTVYVTLEPCAHTGKTPPCVNNLIKAGIKRVVIAAIDPDHRVSGKGIQILKNAGIEV 126 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E HA + + +KR ++LKIA S D I S +TG S+ VH Sbjct: 127 SVGILKEEAEKAHAGFFSILNKKRPFLSLKIATSIDGRIATQTGNSKWLTGAESRQFVHY 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA DA+LVG GTV AD+P L R G + P+RI++D + K+ S +I +A P+ Sbjct: 187 LRATHDAVLVGRGTVEADNPSLNVRGFGRAVNQPVRIVMDSNLKIDTKSNLINSAKEIPL 246 Query: 246 IIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 I + +++A + KN I DL+ + L G+T +L EGG Sbjct: 247 WICHAKESEFSKLSKTGAMSIACKHKNGGI------DLQDAMENLAKNGLTRILCEGGGK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324 +A S +N LVD +I+ ++ +VIG+ G Sbjct: 301 LAASLLNENLVDELIVMQAGLVIGKEG 327 >gi|302392186|ref|YP_003828006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Acetohalobium arabaticum DSM 5501] gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Acetohalobium arabaticum DSM 5501] Length = 371 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/321 (39%), Positives = 182/321 (56%), Gaps = 6/321 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V +IVKDG ++G+G G PHAEV AL++A ++ Sbjct: 7 DIDYMRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNALQDAADK 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AT YVTLEPCSHYG++PPC + +I G+ RVV + DP+ +V+GRGLQ L+ GI V Sbjct: 67 TEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLADAGIEV 126 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E K A++ +R + LK A++ D I S I+G S+ VH Sbjct: 127 ESGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEESRRYVHR 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + D ILVGIGTVL+D+P LT RL P+RI+LD ++ LDS ++ A Sbjct: 187 LRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQESEAKT 246 Query: 246 II-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ E D A + + +I+ + DL LL L + SLLVEGG+ + Sbjct: 247 VVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEGGSRINT 306 Query: 301 SFINSRLVDSIILYRSQIVIG 321 SF+ + LVD I+ + + +IG Sbjct: 307 SFLFTELVDKILYFIAPKLIG 327 >gi|58584287|ref|YP_197860.1| pyrimidine deaminase and reductase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418603|gb|AAW70618.1| Pyrimidine deaminase and reductase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 378 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 138/342 (40%), Positives = 184/342 (53%), Gaps = 22/342 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FMS AL + +G + NP+V C+IVKDG+V+G G T GG PHAEV AL+ A Sbjct: 2 IDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKG 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 GAT YVTLEPC HYG + PC II GI++VVV DPD RVSG G++ L + GI Sbjct: 62 STHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGIT 121 Query: 126 VDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V++ M E K+ + + TR++ R I KIA + D I S IT ++N V Sbjct: 122 VEQGIMQEEAEKLNIGFFTTRKLH-RPFIACKIATTLDGKIATFKGDSKWITSGSTRNWV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--- 240 H LRA+ DAI++G T++ DDP LTCRL GL+ SP+R+I+D KL ++KTA Sbjct: 181 HELRAKYDAIMIGSNTLINDDPLLTCRLPGLESRSPIRLIIDSQEKLKEKHNVVKTADKV 240 Query: 241 --------------LLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGR 285 +IV ND P+ A N D LK + LV Sbjct: 241 TTWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSE 300 Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 G+T LLVEGG + + L+D +I+ RS ++G IP Sbjct: 301 IGITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIP 342 >gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688] gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688] Length = 368 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 193/325 (59%), Gaps = 10/325 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL +A Sbjct: 3 SALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L +G Sbjct: 63 GDLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E++ + +++R +R + KIA S D + S ITG ++ Sbjct: 123 IAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++ Sbjct: 183 VQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGG 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 A ++ + + D + AL + + +++ L LL +L RG+ ++VE GA Sbjct: 243 -NALIVYGSASADRIAALC--QHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 + + ++ L+D +ILY + ++G Sbjct: 300 TLNGALLHGGLIDQLILYYAPKLLG 324 >gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125] gi|10174171|dbj|BAB05273.1| riboflavin specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus halodurans C-125] Length = 368 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 182/330 (55%), Gaps = 14/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G TS NP V ++VKDG ++G G G PHAEV A+ AGE+ Sbjct: 3 DEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYG++PPCA +IE G+ RVV+ +DP +VSGRG++ L Q GI V Sbjct: 63 AKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEV 122 Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + + +IF H T KR ++T+K A + D S IT ++ Sbjct: 123 EVGICKQEALDLNRIFFHFVRT----KRPYVTIKSATTLDGKTATVQGNSKWITSEQARE 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH R + DAILVG+GTVLAD+P LT RL GL +P+R+ILD + LD +I Sbjct: 179 DVHRYRHEHDAILVGVGTVLADNPSLTTRLAAGGL---NPVRVILDRRLRTPLDRNVITD 235 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I E D A +K + + ++ +L L + + S+ VEGGA V Sbjct: 236 GKAPTWIFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLREKNILSVFVEGGATVN 295 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF+ + VD +I Y + V G P+ + Sbjct: 296 GSFVKAGTVDQVITYLAPKVFGGAAAPTAI 325 >gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum Ice1] gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum Ice1] Length = 374 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 135/329 (41%), Positives = 186/329 (56%), Gaps = 7/329 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + +G TS NP V ++VKDG VIG G G PHAEV AL +AGE Sbjct: 5 DFSFMDRALELAALALGRTSPNPVVGAVVVKDGRVIGEGYHRKAGTPHAEVHALRQAGEA 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G T YVTLEPC+H+GR+PPC + II I RVV V DP+ +V+G+G L + GI V Sbjct: 65 ACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREAGIEV 124 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + ++ I ++ + T KR + LK A++ D I A S ++ S+ +VH Sbjct: 125 DVGVMADAAITINQPFFTWVTRKRPWVLLKWAMTADGKIATASGDSRWVSSPASRRKVHQ 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + DAILVGIGTVLADDP+LT RL +P+RII+D + L +K++ +A + Sbjct: 185 WRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIRIIVDSKARTPLTAKVL-SAEAKTI 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I VTE A + ++ C C DL LL L VTSLLVEGGA + Sbjct: 244 IAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLSYLLHRLACDNVTSLLVEGGARIHG 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 +F++ L D ++ + ++G G PSP+ Sbjct: 304 AFLDGNLADRAAIFLAPKIVGGEGAPSPV 332 >gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4] gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4] Length = 368 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 192/325 (59%), Gaps = 10/325 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL +A Sbjct: 3 SALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L +G Sbjct: 63 GNLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E++ + +++R +R + KIA S D + S ITG ++ Sbjct: 123 IAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++ Sbjct: 183 VQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGG 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 A ++ + + D + AL + + +++ L LL +L RG+ ++VE GA Sbjct: 243 -NALIVYGSASADRIAALC--QHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 + + ++ L+D +ILY + ++G Sbjct: 300 TLNGALLHGGLIDQLILYYAPKLLG 324 >gi|255261262|ref|ZP_05340604.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62] gi|255103597|gb|EET46271.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62] Length = 363 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/332 (42%), Positives = 183/332 (55%), Gaps = 16/332 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL R +G NPSV C+IVKDG V+GRG T GG PHAE AL AG Sbjct: 3 DARWMALALELGRRGLGRVWPNPSVGCVIVKDGRVVGRGWTQDGGRPHAETHALAAAGTA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARG+ YVTLEPCSHYG +PPCAQ +I+ G+ RV+V D D RVSGRG L GI V Sbjct: 63 ARGSDVYVTLEPCSHYGHTPPCAQALIDAGVSRVIVAAGDSDPRVSGRGYAMLRDAGICV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + ESE + L + R R +TLK+A S D I A S ITG ++ VH+ Sbjct: 123 DIGLCESEARNDLAGFFKRIETGRPWVTLKLANSFDGRIATASGDSQWITGADARRYVHM 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+ DA++VG GTV AD+P L R G+ P+R++L L D K+ TA PV Sbjct: 183 SRARHDAVMVGAGTVRADNPSLNVRDLGVARQ-PIRVVLSRKLDLPTDCKLAVTAGDPPV 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTSLLVEGG 295 I+ +D A R ++ +C D L L +G+T + EGG Sbjct: 242 WILHSDD----ASQSRIEDWTGHGANCLAAGPEAHRQLDPSACLQTLGAQGLTRVYCEGG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A+A S + + L+D +I Y + + IG G PS Sbjct: 298 GALAASLLGAGLIDEVIGYTAGVAIGAEGTPS 329 >gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis audaxviator MP104C] gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis audaxviator MP104C] Length = 372 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 198/364 (54%), Gaps = 23/364 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V ++V+DG ++GRG A G PHAE+ AL +AGE Sbjct: 1 MDQEYMRMALDLAVRARGRTSPNPLVGAVVVRDGEIVGRGYHARAGLPHAEIVALAQAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARG+T YV+LEPC H+GR+ PC + +I G+RRVV + DP+ +V+GRG+ L + G+ Sbjct: 61 AARGSTLYVSLEPCCHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGVE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ E ++ R + LK+AVS D I S ITG ++ H Sbjct: 121 VTEDVLRDEAARLNEIFIKYITTGRPFVALKVAVSLDGKIATRTGDSRWITGGPAREYAH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA+LVG GTV+ DDP LT RL G P+RI+LD ++ S+++ AP Sbjct: 181 RLRDTYDALLVGRGTVVKDDPSLTTRLPG-GGRDPVRIVLDSLARIPESSRVLSGESTAP 239 Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 VI+ P +A + + ++ C DL+ LL L R +TS++VEGGA V Sbjct: 240 VIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVLLRELAAREITSVMVEGGATVHA 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-----------LEEGYLEKNFMCVRRDYFGSD 349 SF+ +R VD + + + ++ GG+ +P E LE+ VRR G+D Sbjct: 300 SFLEARFVDKLHWFVAPKIV--GGVEAPGAVAGRGVGRISEAVGLER----VRRIELGND 353 Query: 350 VCLE 353 +C+E Sbjct: 354 LCIE 357 >gi|260575298|ref|ZP_05843298.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2] gi|259022558|gb|EEW25854.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2] Length = 357 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/322 (40%), Positives = 181/322 (56%), Gaps = 8/322 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL + +G NP+V C+IV G V+GRG T GG PHAEV AL +AG ARGA Sbjct: 1 MAHALALAARGLGRAWPNPAVGCVIVAGGRVVGRGHTQPGGRPHAEVMALHQAGALARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129 TAYVTLEPC+H+G +PPCA+ +I G+ RVV + DPD RVSG+G L GI V + + Sbjct: 61 TAYVTLEPCAHHGHTPPCAEALIAAGVARVVTALTDPDPRVSGKGHALLRAAGIAVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E +L R + +TLK+A S D I S ITG +S+ H LR Sbjct: 121 LPAEATAANAGFLKRVTQGLPFVTLKLATSLDGRIATETGESRWITGALSRRAGHALRLS 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT LAD+P+LT R G H P+RI++D + S S++ +T APV + Sbjct: 181 HDAVMVGAGTALADNPDLTARGLG-ANHQPVRIVIDSRLRHSPQSRLGQTTRTAPVWLCH 239 Query: 250 ENDDPVLA-LAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 PV A A+ +I+C L + L L G+T +L EGGA +A S I Sbjct: 240 TEAAPVDARQAWEATGARLIFCPATPEGHVALPEALRNLADLGLTRILCEGGAQLAASLI 299 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 RL D + L+ + ++G G+ Sbjct: 300 RDRLADELALFGAGSLLGAEGL 321 >gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046] Length = 371 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 121/321 (37%), Positives = 181/321 (56%), Gaps = 6/321 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G T+ NP V +IVKDG+++G G+ G PHAEV A+ AGE Sbjct: 4 DQDYMQLALELAASARGNTNPNPLVGAVIVKDGVIVGTGLHRKAGEPHAEVHAVNMAGEH 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + AT YVTLEPCSHYG++PPCA+ + E G +RVVV +DP+ V+GRG++ L GI V Sbjct: 64 TKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + ++ + +R + K A++ D I S ITG ++ VH Sbjct: 124 EVGVLQEEAQKLNERFIHNMLTERPFVVAKFAMTLDGKIATYNGHSQWITGEEARADVHE 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + D ILVG+ TVL D+P+LT RLN Q +P+R++LD K +D+ I T Sbjct: 184 LRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIRVVLDSTLKTPVDAHIADTTDART 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 +I+ + + D A + + II D ++ +L L +G+T LLVEGG V Sbjct: 244 IIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIEDMLKALYKKGITHLLVEGGGNVNA 303 Query: 301 SFINSRLVDSIILYRSQIVIG 321 SF+ +D I+Y + V+G Sbjct: 304 SFLRGGFIDQYIVYIAPKVLG 324 >gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus TK-6] Length = 361 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 141/355 (39%), Positives = 196/355 (55%), Gaps = 9/355 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL ++ GLT NP+V C+IVKDG +I G G PHAE ALE+AG + Sbjct: 6 DHHFMRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEKAGTQ 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPC+HYGR+PPC II ++RVV+ DP+ VSGRG+Q L GI V Sbjct: 66 AEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDAGIDV 125 Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + T +KR +ITLK+A S D I S IT S+ H Sbjct: 126 CVGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRTFAHR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+ A+LVGI TVL DDP LT R + E P+R++LDP+ ++ + SK+++ A Sbjct: 186 LRAQATAVLVGINTVLRDDPSLTVR-HIPWESQPIRVVLDPNLRIPITSKLVREK-TAKT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I+T +++ + I ++ + L+++L L + LLVEGGA S Sbjct: 244 LIITASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQTITS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEY 354 FI L D + ++ + I+IGEG + L K M FG DV LEY Sbjct: 304 FIKEDLYDRLFIFLAPILIGEGIGIGDIGTSKLLDAKRHMLKSIYRFGDDVGLEY 358 >gi|295399034|ref|ZP_06809016.1| riboflavin biosynthesis protein RibD [Geobacillus thermoglucosidasius C56-YS93] gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1] gi|294978500|gb|EFG54096.1| riboflavin biosynthesis protein RibD [Geobacillus thermoglucosidasius C56-YS93] gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1] Length = 361 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 124/330 (37%), Positives = 186/330 (56%), Gaps = 12/330 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V ++V G ++G G G PHAEV A+ AGE+ Sbjct: 4 DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNSGEIVGFGAHLKAGEPHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A+GAT YVTLEPCSHYG++PPCA +I+ G+RRVV+ DP+ V+G+G++ L GI Sbjct: 64 AKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGIDV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ + ++F H T K +TLK A S D I A S IT ++ Sbjct: 124 KLGVLKEEADELNRVFFHYIAT----KTPFVTLKYASSLDGKIATATGESKWITSEAARE 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA DAILVG+ TV+AD+P LT RL G + +P+RI+LD H + L++ I++ Sbjct: 180 DVHRYRAVHDAILVGVDTVIADNPSLTVRLPGSGK-NPIRIVLDTHLRTPLEANILQDGQ 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I + KN+ +I ++ +LL +L R +TSL VEGG+ V Sbjct: 239 AETWLIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHVLGERRITSLFVEGGSRVH 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF+ + V+ I+ Y + +IG P+P+ Sbjct: 299 DSFVRAGAVNEIVAYFAPKLIGGKQAPTPI 328 >gi|254511482|ref|ZP_05123549.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium KLH11] gi|221535193|gb|EEE38181.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium KLH11] Length = 358 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 129/323 (39%), Positives = 185/323 (57%), Gaps = 7/323 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL +AGE A+GA Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALAQAGEAAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPCSHYG++PPCAQ +I G+ RVV ++D D RV+G+G L GI V + Sbjct: 61 TAYVSLEPCSHYGKTPPCAQVLIGAGVARVVSAIEDSDPRVAGQGFDMLRAAGIEVTSGV 120 Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E HA + + + R +TLK+A S D I S ITG +++ VH +RA+ Sbjct: 121 LAEQAAQDHAGFFLKTEQGRPFVTLKLASSFDGRIATETGHSQWITGPMARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT ADDP LT R G+ H P+R+++ H + L + +TA PV + Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGV-THQPVRVVVSRHLDVPLMGHLARTATQMPVWLCH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + D A A+ +I C + LL L G+T + EGG+A+A S + Sbjct: 240 GPHPDAERARAWEGLGARLIPCALDGHHVEAADLLQQLGQAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 LVD ++ + + + IG G+P+ Sbjct: 300 GDLVDELVGFTAGLAIGAEGLPA 322 >gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996] gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996] Length = 365 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 132/326 (40%), Positives = 183/326 (56%), Gaps = 11/326 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL +R TS NP V C+I G ++G+G G PHAEV AL +AGE Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L+R R + +K A S D +A S ITG ++ V Sbjct: 125 TESGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LRA+S A+L GIGTVLAD+P L R L++ P RI+LD + L S ++ L+ Sbjct: 185 TLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSKLQTPLGSHMVSDD-LS 241 Query: 244 PVIIVTENDDPVLALAFRK-KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297 P +IVT DD +R +I I+ DL LL L G ++VE GA Sbjct: 242 PTVIVTAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGAT 301 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 + +FI + L D I+LY++ ++GEG Sbjct: 302 LTSAFIEAGLADEIVLYQAPKILGEG 327 >gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium thermocellum ATCC 27405] gi|125712853|gb|ABN51345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium thermocellum ATCC 27405] Length = 365 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 17/358 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+ G Sbjct: 7 FMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDVAG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+ Sbjct: 67 GTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVEVG 126 Query: 130 MESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E I L+ ++T V+K+ + LK A++ D I A S +TG ++N VH++R Sbjct: 127 VLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVIRD 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI+ Sbjct: 187 RVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVILA 246 Query: 249 TEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T + D K + II D DLK L+ L + S+L+EGG + S I Sbjct: 247 TTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSSAI 306 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSDVCLE 353 ++ +VD ++ + S ++G P+ +E E KN V+ FG D+ LE Sbjct: 307 SAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVK---FGEDILLE 361 >gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 2360] gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum JW20] gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 2360] gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum JW20] gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 1313] Length = 368 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 199/358 (55%), Gaps = 17/358 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+ G Sbjct: 10 FMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDVAG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+ Sbjct: 70 GTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVEVG 129 Query: 130 MESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E I L+ ++T V+K+ + LK A++ D I A S +TG ++N VH++R Sbjct: 130 VLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVIRD 189 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI+ Sbjct: 190 RVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVILA 249 Query: 249 TEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T + D K + II D DLK L+ L + S+L+EGG + S I Sbjct: 250 TTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSSAI 309 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSDVCLE 353 ++ +VD ++ + S ++G P+ +E E KN V+ FG D+ LE Sbjct: 310 SAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVK---FGEDILLE 364 >gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylaminouracil reductase [Neisseria lactamica ST-640] gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylaminouracil reductase [Neisseria lactamica 020-06] Length = 369 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 186/327 (56%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I + G ++G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL +L+ +L G ++VE GA Sbjct: 241 SPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ L D I+LYRS ++G G Sbjct: 301 KLASAFLAEDLADEIVLYRSPKILGSG 327 >gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC 33393] gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC 33393] Length = 374 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 134/337 (39%), Positives = 188/337 (55%), Gaps = 21/337 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S DA FM AL ++ T+ NPSV C++VKDG V+G+G A G PHAEV AL Sbjct: 4 PFSPQDAAFMQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE+ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ LS Sbjct: 64 EAGEKARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSD 123 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++E + +L R + + LK+A+S D MA S ITG ++ Sbjct: 124 AGIQSAVGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFK 229 V RA++ AIL TVLADDP L R L QE P+R+ILD K Sbjct: 184 ADVQQYRAKASAILSTSQTVLADDPSLNVRWEELPLDVKASYAQEKLRQPVRVILDSSHK 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 + D K+ T +PV +V E D +L + + D L+ L+ L R Sbjct: 244 VRSDFKVFSTE--SPVWLVGEED---YSLTDFPPFTDYLKLDRNQGETRLQSLMAELGKR 298 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + +L VE GA +A + I LVD +I+Y + ++G+ Sbjct: 299 QINTLWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335 >gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4] gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Geobacter uraniireducens Rf4] Length = 368 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 200/366 (54%), Gaps = 11/366 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 F + M A+ ++ +G T+ NP+V C+IVKDG V+G G G PHAEV AL +AGE Sbjct: 4 FHEKMMKRAIVLAKRGIGRTAPNPTVGCVIVKDGAVVGEGWHKKAGTPHAEVHALRQAGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA YVTLEPC+H+G++PPCA +I + RV + + DP+ RV G G+ L GI Sbjct: 64 MARGADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSAGIE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++E + ++ + LK A++ D AG S IT S+ VH Sbjct: 124 VVVSVLEDNCRSLNEPFIKHMTTGLPFVILKSAMTLDGKTATAGKDSKWITSDKSRQYVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA+ DAI+VG+GTV+ADDP LT R+ ++ P+R+I+D ++ L S+++ A Sbjct: 184 KLRAKLDAIMVGVGTVMADDPLLTSRIPAGRD--PLRVIVDSTLRIPLSSQVLHVDSPAK 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I T +DD A +++ C + DL L L G GV SLL+EGG A+A Sbjct: 242 TVIATISDDEAQAARITASGADVLRCRQKNGRVDLHDLFVKLGGLGVQSLLLEGGGALAG 301 Query: 301 SFINSRLVDS-IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYIG 356 + L+D + Y ++V GEG P + L + + ++ GSD+ ++ Sbjct: 302 EALRCGLIDKCMFFYAPKLVGGEGLGPFSGKGVELMADAITLKNISITKIGSDILVQGYP 361 Query: 357 KNLCLQ 362 +N CLQ Sbjct: 362 ENACLQ 367 >gi|212634188|ref|YP_002310713.1| riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3] gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3] Length = 373 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/336 (38%), Positives = 198/336 (58%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + MS A+ ++ + T NP V +IVKD +++G G G PHAEV AL A Sbjct: 3 STEDNQMMSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNMA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVVV V DP+ +VSGRG+ L G Sbjct: 63 GNDAKGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++ K +L R + +T+K+A S D ++ S ITG ++ Sbjct: 123 IQVDVGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V +RA+ A++ G+ TVLAD+P L R + L + H P+R+ILD + L Sbjct: 183 VQRIRARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQAR--L 240 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVT 288 D+++ ++ +PV++V+ D P + +++ + D R +L+ LLT+L G+ Sbjct: 241 DAELAIFSVTSPVLLVSTRDYPESVKSAWPAHVSHQVLPATDNRVELQALLTLL-GKTCN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+LVE GA +A +F+ S VD IILY++ ++G GG Sbjct: 300 SVLVEAGATLAGAFVASHCVDEIILYQAMKILGAGG 335 >gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei ACS-146-V-Sch2b] Length = 371 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 133/331 (40%), Positives = 186/331 (56%), Gaps = 11/331 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL +R G T TNP V C+IVKD +IG+G G HAEV A+ +A Sbjct: 8 DIFYMERALEIAREGTGKTKTNPLVGCVIVKDDKIIGQGAHLKFGENHAEVNAILDAKSR 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ RGAT YV LEPCSHYG++PPCA+ I++ GIRRVV+ DP +VSGRG++ L G Sbjct: 68 GEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDAG 127 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + + E E + T KR + LK +S D I S IT S+ Sbjct: 128 ISVTEGLCEEECLNLNERFFTYLKNKRPFVVLKSGMSLDGKIATESGESKWITSEFSRAH 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR Q DAI+VGIGTVLADDP L R + +++P+RII D ++ LD+K+++ L Sbjct: 188 GHELRGQLDAIMVGIGTVLADDPSLNTR-HCKYKNNPIRIITDSSLRIPLDAKVLRDDLD 246 Query: 243 APVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + II T D L KN+ +I C + DLK L+ L ++S+L+EGG Sbjct: 247 SIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVDLKDLMEKLKDYDISSILLEGGR 306 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 + + + LVD + + I++G GIP+ Sbjct: 307 TLNAEMLKNNLVDKFYFFIAPILLGSKGIPA 337 >gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399] gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399] Length = 369 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/358 (36%), Positives = 193/358 (53%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AGE Sbjct: 8 DEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRVAGEPHAEIHALRMAGEL 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI + Sbjct: 68 ARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGIEV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + +L V KR +TLK A++ D S ITG ++ +VH Sbjct: 128 TTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARTRVHE 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVGIGTVLADDP LT RL +P+R++LD + D+K++ + Sbjct: 188 WRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAARTI 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V+E P + ++ D+ L+ L +TS+ VEGGA+V SF+ Sbjct: 248 IAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWSFL 307 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 ++ LVD + + + +++G P+ + E +R +D +E +G ++ + Sbjct: 308 SAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESPQTALRL----TDTTVEQVGADILM 361 >gi|84687686|ref|ZP_01015559.1| riboflavin biosynthesis protein RibD [Maritimibacter alkaliphilus HTCC2654] gi|84664269|gb|EAQ10760.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2654] Length = 367 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 138/328 (42%), Positives = 186/328 (56%), Gaps = 9/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G NP+V C+IV ++GRG T GG PHAEV AL +AGE Sbjct: 3 DERFMDLALSLGRRGLGSVWPNPAVGCVIVNGARIVGRGWTQPGGRPHAEVVALAQAGEA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G++PPCA +I GI RVVV + DPD RV+GRG+ L GI + Sbjct: 63 ARGATAYVTLEPCSHHGQTPPCAVALISAGIARVVVALGDPDNRVNGRGIAMLRAAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E+E + +L+R R +TLK+A S D I A S ITG ++ QVH Sbjct: 123 VTGLGEAEARADQVGFLSRVERGRPMVTLKLAASLDGRIATATGESQWITGPEARRQVHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DA++VG GT ADDP LT R G + P+R++L H + LDS + +TA PV Sbjct: 183 ERMIHDAVMVGAGTARADDPSLTVRGLGARRQ-PVRVVLSRHLDIPLDSVLARTAKEVPV 241 Query: 246 IIVTENDDP--VLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ + P V+A L R + ++ D+ L L G+T + EGG +A Sbjct: 242 WLIHGDRAPDGVVAAWEGLGARCIAVPVVLGRI-DVAAALAALGAAGLTRVFCEGGGGLA 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 S + LVD + + + I +G G PS Sbjct: 301 ASLLAEGLVDEYVGFTAGIALGAEGWPS 328 >gi|254467350|ref|ZP_05080761.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium Y4I] gi|206688258|gb|EDZ48740.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium Y4I] Length = 365 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 194/358 (54%), Gaps = 11/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL R G NP+V C+IVK ++GRG T GG PHAE +AL +AGE Sbjct: 4 DHRYMALALSLGRRGQGNCWPNPAVGCVIVKGRRIVGRGWTKPGGRPHAETEALAQAGEA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPC+H G +PPCAQ +I+ G+ RVV + D D RVSG+G++ L GI V Sbjct: 64 ARGATAYVTLEPCAHQGATPPCAQALIKAGVARVVAAIGDSDPRVSGQGIRMLRDAGIRV 123 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + HA + + + R +TLK+A S D I S ITG ++ VH Sbjct: 124 DTGVWGAQAARDHAGFFLKTEQGRPLVTLKLASSFDGRIATGSGKSKWITGPEARRAVHA 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GT ADDP LT R G+ E P+R+++ H L L ++ +TA PV Sbjct: 184 MRARHDAVMVGGGTARADDPSLTVRDLGV-ERQPVRVVISRHLDLPLMGQLARTAKKVPV 242 Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + D A+ +I C D +L L G+T + EGG+A+A Sbjct: 243 WLCHGHGADQERIQAWEGLGAKLIPCASHGVQLDAVDVLQQLGQAGLTRVFCEGGSALAA 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCLEY 354 S + LVD +I + + + IG G+PS L G LE+ F V G D+ + Sbjct: 303 SLLAFDLVDELIGFTAGLGIGAEGLPSIGALGIGRLEEAPRFELVETRPLGGDILHRW 360 >gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193] gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193] Length = 357 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 131/323 (40%), Positives = 188/323 (58%), Gaps = 7/323 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C++V++G ++GRG T GG PHAEV AL +AG+ ARGA Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVLVREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TA+VTLEPCSH+G++PPCAQ +I+ GI R+V V D D RVSG+G + L Q GI V+ + Sbjct: 61 TAFVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEVGV 120 Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 SE HA + + + R +TLK+A S D I S ITG ++ VH +RA+ Sbjct: 121 LSEEAARDHAGFFYKTEQGRPFVTLKMASSFDGRIATGTGQSKWITGPEARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT ADDP LT R G+ H P+R+++ H L L S++ +A P+ + Sbjct: 181 HDAVVVGAGTARADDPSLTVRDLGV-AHQPVRVVISRHLDLPLISQLATSASKVPLWLCH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + D A+ ++ C R D +L L G+T + EGG+A+A S + Sbjct: 240 GQGADVERKQAWEGLGARLLPCASRGVQLDPHDVLQQLGAAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 LVD +I + + + IG G+PS Sbjct: 300 FDLVDELIGFTAGLGIGAEGLPS 322 >gi|39996788|ref|NP_952739.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA] gi|39983676|gb|AAR35066.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA] gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter sulfurreducens KN400] Length = 369 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 12/368 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++SF M AL +R +G TS NP V C+IV++G+V+G G G PHAEV AL E Sbjct: 1 MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGA YVTLEPCSH+GR+PPCA ++ G+ RV V + DP+ V G+G+ L Sbjct: 61 AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ E ++ ++ +TLK A++ D A S IT S+ Sbjct: 121 GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG+GT+LAD+PELT R ++ +P+RII+D K+ +S+++ L Sbjct: 181 YVHQLRAEVDAVMVGVGTLLADNPELTVRH--VKGKNPLRIIVDSSLKIPNESRVLGDDL 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 II T +DD + +I C DL+ L+ L +G+ S+L+EGG+ Sbjct: 239 ARGTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSE 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +A + + L+D IL+ + IV+G +E+ R FG DV + Sbjct: 299 LAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMI 358 Query: 353 EYIGKNLC 360 E + C Sbjct: 359 EAYPEEAC 366 >gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM 2379] gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter propionicus DSM 2379] Length = 367 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 187/328 (57%), Gaps = 8/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M AL +R +G TS NP+V C+IVKDG+++G G G HAE+ ALE AGE Sbjct: 4 DIRQMKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMAGES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGA +VTLEPC H G++PPC+Q +I G+RRVV + DP+ RVSG GL L GI + Sbjct: 64 ARGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGIQV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + ++ + H+T K A++ D I S I+ S+ VH Sbjct: 124 VCGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DAI+VG+ T++ADDP+LT R ++ +P+R+++D + +++ Sbjct: 184 MRARMDAIMVGVDTIIADDPQLTVRH--VRGRNPLRVVVDTRLRTPESVRVLGDGNAVNT 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I T +P + L ++ + I+ CD + +K L+ L RGV S+L+EGG +A S Sbjct: 242 LIATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLAGS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + L+D + + + ++G G SP Sbjct: 302 MLEQGLIDEFVFFLAPKILGSDGF-SPF 328 >gi|163742965|ref|ZP_02150348.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis 2.10] gi|161383648|gb|EDQ08034.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis 2.10] Length = 372 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/327 (40%), Positives = 186/327 (56%), Gaps = 7/327 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DARFMS AL R +G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG+ Sbjct: 11 DARFMSLALSLGRRGLGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDL 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YV+LEPCSH G++PPCAQ +I G RVV ++D D RVSG G L GI V Sbjct: 71 ARGATVYVSLEPCSHTGKTPPCAQALINAGAARVVAAIEDSDPRVSGHGFAMLRDAGIPV 130 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + S+ + HA + + + R +TLK+A S D I A S ITG ++ VH Sbjct: 131 TTGVCSDVAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHA 190 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GT ADDP LT R G+ P+R+++ H L L ++ ++A PV Sbjct: 191 MRARHDAVMVGGGTARADDPSLTVRDLGVARQ-PVRVVISRHLDLPLMGQLARSARDIPV 249 Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAH 300 I D A+ ++ C L+ +L L G+T + EGG+A+A Sbjct: 250 WICHGAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAA 309 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 S + LVD +I + + + IG G+ S Sbjct: 310 SLLAQDLVDELIGFTAGLGIGGDGLSS 336 >gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2] gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2] Length = 362 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/329 (39%), Positives = 175/329 (53%), Gaps = 14/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ E + F+H T ++TLK A S D A S IT ++ Sbjct: 123 ETGVLKEQAEELNEKFMHFMRT----GLPYVTLKAAASLDGKTATATGDSKWITSEEARM 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H R ILVG GT+ ADDP LTCRL G + P+R++LD + L SK+I+ Sbjct: 179 DAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAV-NQPVRVVLDTTLSIPLQSKVIQDKE 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299 I T DP K+ + + D +L + +L L RG+ S+ VEGGA V Sbjct: 238 APTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVH 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SF+ L II Y + +I GG+ SP Sbjct: 298 ASFVKEGLYQQIIFYLAPKLI--GGLQSP 324 >gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580] gi|52786214|ref|YP_092043.1| hypothetical protein BLi02475 [Bacillus licheniformis ATCC 14580] gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580] gi|52348716|gb|AAU41350.1| RibD [Bacillus licheniformis ATCC 14580] Length = 362 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/329 (39%), Positives = 175/329 (53%), Gaps = 14/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ E + F+H T ++TLK A S D A S IT ++ Sbjct: 123 ETGVLKEQAEELNEKFMHFMRT----GLPYVTLKAAASLDGKTATATGDSKWITSEEARM 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H R ILVG GT+ ADDP LTCRL G + P+R++LD + L SK+I+ Sbjct: 179 DAHQYRKNHQCILVGSGTIKADDPSLTCRLPGAV-NQPVRVVLDTTLSIPLQSKVIQDKE 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299 I T DP K+ + + D +L + +L L RG+ S+ VEGGA V Sbjct: 238 APTWIYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVH 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SF+ L II Y + +I GG+ SP Sbjct: 298 ASFVKEGLYQQIIFYLAPKLI--GGLQSP 324 >gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70] gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70] Length = 361 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/330 (37%), Positives = 188/330 (56%), Gaps = 12/330 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V ++VKDG ++G G G HAEV A+ AGE+ Sbjct: 4 DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKDGEIVGFGAHLKAGELHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A+G+T YVTLEPCSHYG++PPCA ++E G++RVV+ DP+ V+G+G++ L GI Sbjct: 64 AKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGIDV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ + ++F H Y+ K +TLK A S D I S IT ++ Sbjct: 124 KLGVLKEEADELNRVFFH-YIA---AKTPFVTLKYASSLDGKIATTTGESKWITSEAARE 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA DAILVG+ TV+AD+P LT RL + +P+RI+LD H + LD+ I+ Sbjct: 180 DVHRYRAVHDAILVGVNTVIADNPSLTVRLPEGGK-NPIRIVLDTHLRTPLDANILNDGQ 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+V + K+N+ II D+ +LL +L + +TSL VEGG+ V Sbjct: 239 AETWIVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRVLGEKRITSLFVEGGSHVH 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF+ ++ V+ I+ Y + +IG P+P+ Sbjct: 299 DSFVRAKAVNEIVAYFAPKIIGGKQAPTPI 328 >gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC 700345] gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC 700345] Length = 373 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/333 (39%), Positives = 191/333 (57%), Gaps = 18/333 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL AG + Sbjct: 6 DSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMAGSD 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L GI V Sbjct: 66 AKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M E K +L R + +T+K+A S D ++ S ITG ++ V Sbjct: 126 DVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235 LRA+ A++ G+ T+LADDP L R + L + H P+R++LD +L + Sbjct: 186 LRARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLGHELN 245 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVTSLL 291 + K + +P+++V+ P A ++ + D R DL LL++L G S+L Sbjct: 246 LFK--IDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLL-GESCNSVL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A +F+N L D I+LY++ ++G G Sbjct: 303 VEAGATLAGAFVNQGLADEIVLYQAMKILGSQG 335 >gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens QYMF] gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 205/363 (56%), Gaps = 16/363 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A+ ++ G T+ NP V +IVK+ VIG G Y G PHAEV A A E+ + Sbjct: 4 QYMRKAIELAKKGTGHTNPNPLVGAVIVKNNKVIGEGYHHYYGGPHAEVDAFNNATEDVK 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I+E GI +VV+ + DP+ V+G G+ L + GI ++ Sbjct: 64 GATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIEVIS 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ESE K ++ + LK A++ D I A S IT S+ VH +R Sbjct: 124 EVLESEAKNLNEIFVKYITTEMPFCILKTAMTLDGKIATATGDSKWITNEESRQYVHEIR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPVI 246 Q +I+VGIGTVL DDP+LT RL+ + P+R+I+D K L +++++ ++ + +I Sbjct: 184 HQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVDTEAKTPLWAQVLQLSSKVRTII 243 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE DP A +K +I + DLK L+ L +G+ S+L+EGGA + S Sbjct: 244 ATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQQLGAKGIDSVLIEGGATLNDSA 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-------EGYLEKNFMCVRRDYFGSDVCLE-Y 354 + +VD ++ + + ++G +P+ + ++ + VR+ FG D+ +E Y Sbjct: 304 LQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDAIQLTDIQVRK--FGQDIMIEGY 361 Query: 355 IGK 357 +GK Sbjct: 362 LGK 364 >gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256] gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256] Length = 365 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/326 (41%), Positives = 184/326 (56%), Gaps = 11/326 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL +R TS NP V C+I ++G+G G PHAEV AL +AGE Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L+R R + +K A S D +A S ITG ++ V Sbjct: 125 TESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LRA+S A+L GIGTVLAD+P L R L++ P RI+LD + L S II L+ Sbjct: 185 TLRAESCAVLTGIGTVLADNPCLNVRAFPTLRQ--PARIVLDSKLQTPLGSHIISDD-LS 241 Query: 244 PVIIVTENDD-----PVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 P IIVT DD P A + + + + R DL LL L G ++VE GA Sbjct: 242 PTIIVTAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGAT 301 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 +A +FI S L D I+LY++ ++GEG Sbjct: 302 LASAFIESGLADEIVLYQAPKILGEG 327 >gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b] gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b] Length = 354 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 190/346 (54%), Gaps = 7/346 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A++ ++ G T NP V ++VKDG ++G G G PHAEV A+ AG A Sbjct: 3 QYMEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAAAY 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GAT YVTLEPCSH+G++PPCA I+E GI+RVV+ + DP+ V+G G+ L G+ VD Sbjct: 63 GATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVDV 122 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E + A+L KR ++ LK A S D + + S +T ++ VH LR Sbjct: 123 GLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHELR 182 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A DAIL GIGTVLADDP LT RL+ + P R++LD +L S + +TA PV++ Sbjct: 183 ATVDAILTGIGTVLADDPSLTVRLDRVTRQ-PKRVVLDRDLRLPFASTLARTAEDVPVLL 241 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 T +D+ R K I D L +L L G+ +L+E G + S ++ Sbjct: 242 FTSSDEA--ERRERAKAAGIELFDYTSLGTVLETLYANGIGRVLIEAGPTLVTSLLDGGY 299 Query: 308 VDSIILYRSQIVI-GEGGIPSPLEEGYLE--KNFMCVRRDYFGSDV 350 VD + Y+S V G+ G+ +EG ++ F + + G D+ Sbjct: 300 VDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDL 345 >gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / phosphoribosylamino uracil reductase [Neisseria meningitidis alpha14] gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / phosphoribosylamino uracil reductase [Neisseria meningitidis alpha14] Length = 369 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I V+G+G G PHAEV AL +A Sbjct: 3 SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|170750355|ref|YP_001756615.1| riboflavin biosynthesis protein RibD [Methylobacterium radiotolerans JCM 2831] gi|170656877|gb|ACB25932.1| riboflavin biosynthesis protein RibD [Methylobacterium radiotolerans JCM 2831] Length = 369 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 143/363 (39%), Positives = 191/363 (52%), Gaps = 13/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI--VIGRGVTAYGGCPHAEVQALEE 62 S DA FM AL R +G T NPSV ++V+ G ++G TA GG PH E AL Sbjct: 2 SGDANFMRLALALGRRGLGTTWPNPSVGAVVVEPGTGRILGTAATAQGGRPHGEPVALAA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPCSH+GR+PPC I+ GI RVV ++DPD RV+GRG L + Sbjct: 62 AGEAARGATLYVTLEPCSHHGRTPPCTDAILAAGIARVVSALEDPDPRVAGRGHDLLRRG 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ +M E ++TR R + LK+A ++D AG + ITG ++ Sbjct: 122 GVAVETGLMRDEAARDHVGHVTRVTRGRPALHLKLARTRDGFCAAAGPERLRITGPVADG 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VHL RA +DAIL+GIGT ADDP LT RL GL SP+R++LD H +LS S + +TA Sbjct: 182 AVHLWRAHADAILIGIGTARADDPSLTVRLPGLGARSPLRVVLDTHLRLSPASVLARTAR 241 Query: 242 LAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 P +++T P + AL + DL LT L RG+T L EGG Sbjct: 242 DTPTLVLTTRSAPAHARRALEALGVAVATVPADPAGGIDLPAALTHLGERGLTRLCSEGG 301 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +A + + L+D+ L + +G G + L E F R G D Sbjct: 302 PRLAEALARADLIDACTLVTGPMALGPAGGLRALGPALAEALSGDRFREAERLQLGPDAA 361 Query: 352 LEY 354 + Y Sbjct: 362 VTY 364 >gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M13399] Length = 369 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I V+G+G G PHAEV AL +A Sbjct: 3 SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio acidaminovorans DSM 6589] Length = 377 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 133/320 (41%), Positives = 186/320 (58%), Gaps = 11/320 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + S NP V C+IVKDG V+G G G PHAEV+AL AG+ A+G Sbjct: 21 FMRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMAGDRAQG 80 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSH+G++PPCA ++E GIRRVV + DP+ +V+GRGL+ L+ G+ +V Sbjct: 81 ATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEVVGP 140 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME + ++ R R +TLK A+S D + S ITG +++ + HLLRA Sbjct: 141 VMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHLLRA 200 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVGI TV+ DDP L R + SP ++ILD ++ LD+K +K I+ Sbjct: 201 EHDAILVGINTVINDDPALNVR--SVDGDSPKKVILDGGLRVPLDAKALKD---GERIVF 255 Query: 249 TENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T D P + A R + + + DL +L+ L G GV SLLVEGG V +F+ Sbjct: 256 TSTDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAFV 315 Query: 304 NSRLVDSIILYRSQIVIGEG 323 + L D + L+ S ++G G Sbjct: 316 DRCLGDMVSLFISPSILGRG 335 >gi|218514099|ref|ZP_03510939.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli 8C-3] Length = 179 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/177 (60%), Positives = 133/177 (75%), Gaps = 1/177 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITG 177 >gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus flavithermus WK1] gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus flavithermus WK1] Length = 358 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 128/331 (38%), Positives = 185/331 (55%), Gaps = 12/331 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL+ ++ G TS NP V ++VK G ++G G G PHAEV AL AGE Sbjct: 1 MDEQYMRFALQLAQSARGQTSPNPLVGAVVVKHGEIVGFGAHLKAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GAT YVTLEPCSHYGR+PPCA +IE ++RVVV DP+ V+G+G++ L + GI Sbjct: 61 KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120 Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 ++ ++ ++F H T K ++TLK A+S D I S IT ++ Sbjct: 121 VTVGVLKEEADALNEMFFHYIST----KTPYVTLKYAMSLDGKIATKTGESKWITSEDAR 176 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH R DAI+VG+GT+LADDP LT R G + P+RI+LD H + L + ++ Sbjct: 177 RDVHRERRMHDAIVVGVGTILADDPSLTVRF-GYEGKQPIRIVLDTHLRTPLHANVVTDQ 235 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298 I+V ++ + ++II + D+ LL L R V S+ VEGGA V Sbjct: 236 KAPTWIVVGQHVTEEQIKPYEHAGVHIIRMNENKIDIPFLLHELGKRNVMSIFVEGGAHV 295 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SF++SR V +I Y + ++IG PS + Sbjct: 296 HGSFLHSRSVQQVIAYIAPMLIGGNEAPSAI 326 >gi|23008993|ref|ZP_00050209.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 284 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 114/254 (44%), Positives = 154/254 (60%), Gaps = 1/254 (0%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAPGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSHYGR+PPC + I GIRRVV ++DPD RV+GRG L G+ Sbjct: 73 EAARGATLYVTLEPCSHYGRTPPCTEATIASGIRRVVTAIEDPDPRVAGRGHAQLRAAGL 132 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ E + +R R + LK+A ++D + + ITG I+ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGPIADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL + SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLADRSPVRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLA 257 P +++T P A Sbjct: 253 PTLVLTGRGAPAHA 266 >gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4] gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4] Length = 370 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 136/361 (37%), Positives = 196/361 (54%), Gaps = 11/361 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G TS NP V ++VK+G VI G G PHAE++AL AGEE Sbjct: 7 DEFFMRRALELALKARGRTSPNPMVGAVLVKEGRVIAEGYHRRAGMPHAEIEALRAAGEE 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YV LEPC H GR+ PC + II GI+RVVV ++DP+ V+G+G++ L + G+ V Sbjct: 67 ARGATLYVNLEPCCHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILREAGLEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + ++ + + LK+A++ D I + + ITG ++ VH Sbjct: 127 TVGVLEQEARRLNEVFVKFITTREPFVVLKVAMTLDGKIATSTGEARWITGPEARAYVHE 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVG GTVL DDP LT RL G ++ P+R+IL L L ++++ AP Sbjct: 187 LRDTYDAILVGKGTVLKDDPSLTARLPGARD--PVRVILSSLADLPLSARVLNLNSSAPT 244 Query: 246 -IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + VTE P A + K ++ C DLK LL L R +T +LVEGG V S Sbjct: 245 WVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDLKLLLKELGRREITGVLVEGGGTVNAS 304 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ +RLVD +I + + G P P+ +E +R D+ ++ +G + C Sbjct: 305 FLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVEHPDRALRL----KDLTVKKLGADFCF 360 Query: 362 Q 362 + Sbjct: 361 E 361 >gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis HAW-EB4] gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis HAW-EB4] Length = 373 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/333 (39%), Positives = 195/333 (58%), Gaps = 18/333 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL AG + Sbjct: 6 DSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMAGAD 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L GI V Sbjct: 66 AKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M E K +L R + +T+K+A S D ++ S ITG +++ V Sbjct: 126 DVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARSDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235 LRA+ A++ G+ T+LADDP L R + L + H P+R++LD +L + Sbjct: 186 LRARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLGTELN 245 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCR-DLKKLLTILVGRGVTSLL 291 + +A +P+++V+ P A ++ + D R DL+ LL++L G+ ++L Sbjct: 246 LFNSA--SPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLL-GKSCNTVL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A +F+N LVD I+LY++ ++G G Sbjct: 303 VEAGATLAGAFVNQGLVDEIVLYQAMKILGGQG 335 >gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319] gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319] Length = 363 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 194/336 (57%), Gaps = 6/336 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ +R G T NP V +IV D ++G G G PHAE+ AL AGE+A+G Sbjct: 7 YMNIALQNARSTKGQTEPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI ++ Sbjct: 67 ATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEVITG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E + + V K+ ++LK A++ D I A S IT ++ VH LR Sbjct: 127 VCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQLRH 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++ ILVG+ TV+ D+PELT R+ G + SP+RI++D ++ L+SK+ +L I Sbjct: 187 ETAGILVGVNTVIKDNPELTTRIEGGR--SPIRIVMDSKLRMPLESKLATDSLAPTWIFT 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ K+ + + D L+ +L+IL + V+SLL+EGG V +F+ + Sbjct: 245 SQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFLEN 304 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 RL+D ++LY + + G P+ LE +EK + V Sbjct: 305 RLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAV 340 >gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus C3-41] gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus C3-41] Length = 375 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/364 (35%), Positives = 200/364 (54%), Gaps = 18/364 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A Sbjct: 6 MTTKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFRM 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+ AT YVTLEPCSH+G++PPCA + + G+ RVVV + DP+ V+GRG+Q L Sbjct: 66 AGEHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRDA 125 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E + + ++ + KR I K A++ D I S +TG ++ Sbjct: 126 GITVEVGVLEQQARRLNERFIHNMLTKRPFIISKFAMTVDGKIATHTGHSKWVTGKAARE 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ ++ T Sbjct: 186 DVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRTPLDANVLNTE- 244 Query: 242 LAPVIIVTEND---DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296 AP I+V ND + + L + + I D R L ++L L G+T +L+EGG+ Sbjct: 245 EAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDEMLARLYEHGITDILLEGGS 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGS 348 V SF+ +D ++Y + V+G G PS + E + + F D G Sbjct: 305 KVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLMNEAW-QVEFASF--DKIGE 361 Query: 349 DVCL 352 D+C+ Sbjct: 362 DLCI 365 >gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002] gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002] Length = 364 Score = 216 bits (549), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 196/362 (54%), Gaps = 13/362 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D M+ ALR + + T+ NP V C++V+DG V+G G G PHAEV AL Sbjct: 1 MTFSAVDHAMMAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV + DP V+GRGL L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++E+E + +L+R R +TLK A S D + S ITG + Sbjct: 121 AAGIEVAVGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA+S AIL G GTVLADDP+LT R P R+++D + S ++I + Sbjct: 181 RRDVHRLRARSCAILTGSGTVLADDPQLTVR-EVFTPRQPRRVVVDSRLQTSPGARIYRD 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR---DLKKLLTILVGRGVTSLLVEGG 295 I+ T D + ++ + + + D DL LL L GV L+VE G Sbjct: 240 ---GETILATAVADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRR-DYFGSDVC 351 A + + + + LVD I+LY + ++G +G P+ E K + VR G DV Sbjct: 297 AGLNGALLQAGLVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVR 356 Query: 352 LE 353 LE Sbjct: 357 LE 358 >gi|220931696|ref|YP_002508604.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase [Halothermothrix orenii H 168] gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase [Halothermothrix orenii H 168] Length = 371 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 121/320 (37%), Positives = 183/320 (57%), Gaps = 8/320 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L +R G T+ NP V +IV++G ++G+G Y G PHAE+ ALEEAGE ARG Sbjct: 12 YMQKVLELARKGEGYTAPNPLVGAIIVREGEIVGQGFHQYYGGPHAEILALEEAGERARG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 AT YV LEPC HYG++PPC + II+ G++RV+ + DP+ V+G+G++ L + GI V+ Sbjct: 72 ATLYVNLEPCCHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGIEVEVG 131 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + Y+ R + LK A++ D I S I+ ++ H LR Sbjct: 132 LLRKEAERLNEVYIRYISSDRPFVYLKSALTLDGFIATVTGDSRWISNEKARLFAHTLRH 191 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+LVGIGT+L DD LT RL + +RIILDP + D+++I I+V Sbjct: 192 KVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRIILDPELSIPPDARVINQKSRKRTILV 251 Query: 249 --TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 + D+ RK+N+ I+ + LK LL IL +G++S+LVEGG V +S Sbjct: 252 CGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLKALLRILHKQGISSILVEGGGRVNYS 311 Query: 302 FINSRLVDSIILYRSQIVIG 321 F+ LVD + + + I++G Sbjct: 312 FLKEGLVDKVYFFIAPIILG 331 >gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240149] Length = 369 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 183/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL +L+ +L G ++VE GA Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis SK2] gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis SK2] Length = 377 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 188/344 (54%), Gaps = 20/344 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D ++M+ AL+ +R + T NP V C++V+DG V+G G A G PHAE AL Sbjct: 1 MSFSAADHQYMARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGATAYVTLEPCSH GR+ PCA +I+ G+ RVV ++DP+ V+G+GLQ L+ Sbjct: 61 AQAGERARGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLA 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + +++R +R +I +KIA S D MA S ITG + Sbjct: 121 DAGIATAVGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-----RLNGLQEHS--------PMRIILDP 226 + V LRA+S A++ G+GTVLAD P T RL ++H+ P+R+ILD Sbjct: 181 REDVQRLRARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDR 240 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL 282 + D ++ L ++V P A ++ DL++LL L Sbjct: 241 TLRTPPDVPVVSA--LGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIEL 298 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 R +LVE GA +A +F+ L D I++Y + ++G P Sbjct: 299 NRRECNEVLVECGATLAGAFVREGLFDEILVYMAPTLLGSSARP 342 >gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis alpha710] gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579] gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NZ-05/33] Length = 369 Score = 215 bits (547), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|78222833|ref|YP_384580.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Geobacter metallireducens GS-15] gi|78194088|gb|ABB31855.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Geobacter metallireducens GS-15] Length = 370 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 199/363 (54%), Gaps = 12/363 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 + M AL +R G TS NP+V C+IV+DG ++G G G PHAEV AL +AGE AR Sbjct: 7 KIMKRALALARRGKGKTSPNPAVGCVIVRDGAIVGEGWHRKAGTPHAEVHALRQAGELAR 66 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA YVTLEPCSH+G++PPCA ++E G+ RV V + DP+ +VSGRG++ L GI +V Sbjct: 67 GADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLRVAGIEVVT 126 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+E + ++ + LK A++ D A S IT S+ VH LR Sbjct: 127 GIREAECRRLNEPFVKHVTTGLPFVILKSAMTMDGKTATASGDSRWITNEKSRRYVHKLR 186 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI+VG+GTVLADDP+LT R+ + P+R+++D ++ ++++ A ++ Sbjct: 187 SMVDAIMVGVGTVLADDPQLTARIP--RGKDPVRVVVDSSLRIPSGARMLHQESPATTVV 244 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T ++D + ++ C DL+ LL L RGV S+L+EGG+ +A + Sbjct: 245 ATVSEDRNRIVKLESAGAEVLRCHAVMGRIDLRDLLARLGARGVQSILLEGGSELAGEAL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-RD----YFGSDVCLEYIGKN 358 + L+D +L+ + +G E+ C R +D FG DV +E ++ Sbjct: 305 RAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRLKDVSVRRFGDDVMIEAYPED 364 Query: 359 LCL 361 LCL Sbjct: 365 LCL 367 >gi|307293539|ref|ZP_07573383.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum L-1] gi|306879690|gb|EFN10907.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum L-1] Length = 317 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 132/315 (41%), Positives = 174/315 (55%), Gaps = 41/315 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ S GL++ NP+V CLIVK+G V+GRG T GG PHAE QAL+EA E ARGA Sbjct: 1 MAAAIALSERGRGLSTPNPNVGCLIVKEGHVVGRGWTQKGGRPHAEAQALDEAMERARGA 60 Query: 71 TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TAYVTLEPC H R P CA + G+RRVV+ + DPD R G+G WL Q+GI VD Sbjct: 61 TAYVTLEPCFHLSSRGPRCADLMARAGVRRVVIALRDPDPRTDGQGADWLRQRGIAVDMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M E + ++ RQ R +TLK+ +S D I +A S ITG ++ H+ RA Sbjct: 121 LMAQEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPDARAHAHVERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ SP R++L Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRSPRRVLL------------------------ 216 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + D P +I D+ L V LLVEGGA A +F+ + LV Sbjct: 217 SHGDAP--------DGWEVIAA-PEDIAALPQ------VDHLLVEGGAQAAAAFLRADLV 261 Query: 309 DSIILYRSQIVIGEG 323 D ++LYR+ I+IG+G Sbjct: 262 DRLLLYRAPILIGDG 276 >gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] Length = 369 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327 >gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330] Length = 360 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 131/351 (37%), Positives = 191/351 (54%), Gaps = 12/351 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D + M AL + TS NP V C+I +IG+G G PHAEV A+ +AGE Sbjct: 8 DTQHMQRALELAWQGRFSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIRQAGEL 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI+V Sbjct: 68 ARGATAYVTLEPCSHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQAAGIMV 127 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E E + +L+R R ++LKIA S D ++ S ITG ++ V + Sbjct: 128 EQGLLEHEARQLNRGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAARADVQI 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RAQS A+L GIGTVLAD+P L R + P+R++LD + S II+ + Sbjct: 188 QRAQSCAVLTGIGTVLADNPRLNVR-DFPTVRQPLRVVLDSQLRTPKSSHIIQDGQRT-L 245 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 II T D A N+ I L ++L L RG+ L++E G+ +A +F+ Sbjct: 246 IITTSPDTQKFAT---YANVEISKQPAPISLPEVLHELAQRGIGELMIEAGSHLASAFLQ 302 Query: 305 SRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEKN--FMCVRRDYFGSDV 350 L+D I+ Y++ ++G+ G P + L +N + V D G D+ Sbjct: 303 QDLLDEIVYYQAPKLLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDI 353 >gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 137 str. F0430] gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 137 str. F0430] Length = 386 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 194/358 (54%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AGE Sbjct: 25 DEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRAAGEPHAEIHALRMAGEL 84 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI + Sbjct: 85 ARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGIEV 144 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + +L V KR +TLK A++ D S ITG ++ +VH Sbjct: 145 TTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARMRVHE 204 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVGIGTVLAD+P LT RL +P+R++LD + D+K++ + Sbjct: 205 WRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAARTI 264 Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V+E P + ++ + D+ L+ L +TS+ VEGGA+V SF+ Sbjct: 265 IAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWSFL 324 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 ++ LVD + + + +++G P+ + E +R +D +E +G ++ + Sbjct: 325 SAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRL----TDTTVERVGADILM 378 >gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 367 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/330 (39%), Positives = 184/330 (55%), Gaps = 7/330 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL + G TS NP V ++VKDG ++G G G PHAE+ AL AG E Sbjct: 6 DQRFMQRALELAARARGRTSPNPLVGAVLVKDGQILGEGYHQRAGTPHAEINALNTAGRE 65 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A+GA+ YV LEPCSHYGR+ PCA ++E G+ VV+ DP+ +VSGRG+Q L + GI Sbjct: 66 RAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQILQEAGIK 125 Query: 126 VDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + L+ + + ++ R ++LK+A++ D I + S ITG S+ VH Sbjct: 126 TRVGVLTAEARELNEFFFKYIQGGRPFVSLKVAMTLDGKIASSNGDSRWITGTASREYVH 185 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR D I+VGIGTVL DDP L RL + P+RII+D + LDS I +T Sbjct: 186 QLRNIYDGIMVGIGTVLKDDPRLNTRLELEGKRDPVRIIIDGRLDMPLDSNIARTGHEQR 245 Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T EN D A + R+ + II D ++++ L IL + SLL+EGGA + Sbjct: 246 TLVFTAENADQEKANSLRECGLEIIKLGGNPDRLNIEEALDILGKMEIMSLLLEGGAEIN 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 I +LVD + + + +IG PSPL Sbjct: 306 SYMIEKQLVDKLYWFIAPKIIGGRSSPSPL 335 >gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM 13528] gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM 13528] Length = 372 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 208/370 (56%), Gaps = 14/370 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D ++M AL+ + G + NP V +IVK+G +IG+G + G HAEV AL Sbjct: 1 MEKENTDEKYMKEALKLALLGKGFVNPNPLVGAVIVKNGKIIGKGYHRFFGGAHAEVYAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ A+GA YVTLEPCSHYG++PPCA+ I+E GI++VV+ DP+ VSGRG++ L Sbjct: 61 REAGDNAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + I +V +ME E +++ K + LK V+ D I S ITG S Sbjct: 121 DENIEVVTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLDGKIATVSGESKWITGEKS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VH +R + AI+VG+GTV+ DDP LT RL + SP +I+D ++ ++S+I KT Sbjct: 181 RLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEE-KCKSPKAVIVDSKLRVPVESQIFKT 239 Query: 240 ALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293 + +II TE D V A + + +NI+ C DLK L L G+ S+LVE Sbjct: 240 SREREIIIACTEKFDKVKAESLKAMGVNIVVCTENKEGRVDLKYLTKKLGEMGIDSVLVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCL 352 GG+ + S + S +V+ +I + + ++G + + EGY N D D+C Sbjct: 300 GGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSV-EGYGIGNL----SDSIKLKDICA 354 Query: 353 EYIGKNLCLQ 362 E +G+++ +Q Sbjct: 355 ENVGEDIMIQ 364 >gi|288957859|ref|YP_003448200.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp. B510] gi|288910167|dbj|BAI71656.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp. B510] Length = 376 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 151/337 (44%), Positives = 196/337 (58%), Gaps = 10/337 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P D R M AAL + +G T NP+V C++V+DG VIGRG T GG PHAE +AL Sbjct: 4 LPDPETDLRHMRAALALAGRGLGRTWPNPAVGCVLVRDGAVIGRGWTQPGGRPHAETEAL 63 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A A GATAYVTLEPC+HYGR+PPCA ++E + RVVV DPD RV+G GL Sbjct: 64 ARARACSGGAEGATAYVTLEPCNHYGRTPPCALALVEARVARVVVACQDPDPRVAGGGLA 123 Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI V + E+E + R R +T KIA + D I A S ITG Sbjct: 124 RLRDAGIAVTTGLCEAEALALNEGFFNRITRNRPLVTCKIASTLDGRIATATGESQWITG 183 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H LRA DAILVGIGT LADDPELTCRL GL++ SP+R+++D +L +K+ Sbjct: 184 PTARAWGHRLRAGHDAILVGIGTALADDPELTCRLPGLEDRSPVRVVMDSGLRLPATAKL 243 Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSL 290 A P +VT + DP+ A A + I+ D R D LT L RG+T L Sbjct: 244 ATGARRIPTWVVTGPSPDPMRAGALAALGVEIVPAAADGDGRVDPAAALTALAARGITRL 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 LVEGGAAVA + + + LVD + +R+ +IG G+P+ Sbjct: 304 LVEGGAAVAGALLGAGLVDRLEWFRAASLIGGDGLPA 340 >gi|260434096|ref|ZP_05788067.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis ITI-1157] gi|260417924|gb|EEX11183.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis ITI-1157] Length = 366 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 203/358 (56%), Gaps = 11/358 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D R+M+ AL R G+ NP+V C++VK+G ++GRG T GG PHAE AL + Sbjct: 1 MTDTDKRYMALALSLGRRGQGMCWPNPAVGCVVVKNGRIVGRGWTQPGGRPHAETVALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG+TAYV+LEPC+H+G++PPCAQ +I+ G+ RVV ++D D RV+G G + L Sbjct: 61 AGLLARGSTAYVSLEPCAHHGKTPPCAQALIDAGVARVVSAIEDSDPRVAGLGFEMLRAA 120 Query: 123 GIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V + ++ HA +LTR + R +TLK+A S D I + S IT S+ Sbjct: 121 GVDVTTGVLADQAARDHAGFLTRTEQGRPFVTLKLACSFDGRIATSTGQSKWITSPQSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G+ + P+R+++ H + L ++ ++A Sbjct: 181 VVHAMRARHDAVMVGAGTARADDPSLTVRDLGVAQQ-PVRVVVSRHLDVPLLGQLARSAS 239 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 PV + + DP A A+R +I C + D LL L G+T + EGG+ Sbjct: 240 EVPVWLCHGPSPDPERARAWRGLGAKLIPCALQDHHIDPADLLQQLGQEGLTRVFCEGGS 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350 A+A S + + LVD ++ + + + IG G+P+ G E F V G DV Sbjct: 300 ALAASLLAADLVDELVGFTAGMAIGAEGLPAIGAMGLSELADAPRFDLVETKIVGPDV 357 >gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM 6192] gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM 6192] Length = 362 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 190/337 (56%), Gaps = 10/337 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS NP V ++VKDG V+G G G PHAEV AL EAGEEARGA YVTLEPC H+ Sbjct: 21 GRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSEAGEEARGAEMYVTLEPCCHW 80 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141 GR+PPC I++ G+RRVVV DP+ +V+G+GL L++ G+ V+ ++ E + + Sbjct: 81 GRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNRGF 140 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 ++R R + K+A S D I + S ITG ++ +VH LRA SD ++ GIGTVL Sbjct: 141 ISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARWEVHRLRAGSDVLVTGIGTVL 200 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 ADDP T R+ G + P ++LD +L + +++++ V++V D Sbjct: 201 ADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREGT---VVMVGPGVDAGWRGEVE 257 Query: 262 KKNINIIYCDCRDLK---KLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ + ++ RD K + ++ +G GV +VE GA V +F+ + +VD ++++ + Sbjct: 258 RRGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAGVTGAFLEAGMVDELVVFVAP 317 Query: 318 IVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 V+GE G + + EG E+ + G DV + Sbjct: 318 RVLGEGRGWVEGRVVEGLGEREWEVREVRRVGEDVMV 354 >gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18] gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18] Length = 374 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/328 (38%), Positives = 195/328 (59%), Gaps = 7/328 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ + M AL +R VG T+ NP+V C+IV+DG V+G+G G PHAEV AL Sbjct: 1 MSADHLKMMRLALSEARKGVGKTAPNPAVGCVIVRDGEVVGKGWHKKAGTPHAEVHALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG++ L Sbjct: 61 AGELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E+E ++ + KR ++ LK A++ D A S +T S+ Sbjct: 121 GIEVEVGLLEAESLEINRPFVKWILTKRPYVVLKSALTLDGKSATATGDSKWVTCDRSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR + DAI+VG+GTV+ DDP LTCR+ G ++ P+R+I+D ++ + + Sbjct: 181 EVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPGGKD--PLRVIVDSTLRIPRHAALFSLRS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAA 297 A +I T D A + ++ C+ +D + LLT L RGV S+L+EGG+ Sbjct: 239 EAKTVIATCCADLARIDAVAAHGVEVLVCNEKDGRVDPDDLLTKLGERGVQSILLEGGSH 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325 +A +F+ + L+D +L+ + ++G G+ Sbjct: 299 LAGAFLRAGLIDRCMLFLAPKLVGGAGM 326 >gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551] gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551] Length = 363 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 194/336 (57%), Gaps = 6/336 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ ++ G T NP V +IV D ++G G G PHAE+ AL AGE+A+G Sbjct: 7 YMNIALQNAKATKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI ++ Sbjct: 67 ATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEVITG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E + + V K+ ++LK A++ D I A S IT ++ VH LR Sbjct: 127 VCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQLRH 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++ ILVG+ TV+ D+PELT R+ G + SP+RI++D ++ L+SK+ +L + Sbjct: 187 ETAGILVGVNTVIKDNPELTTRIEGGR--SPIRIVMDSKLRMPLESKLATDSLAPTWVFT 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ K+ + + D L+ +L+IL + V+SLL+EGG V +F+ + Sbjct: 245 SQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFLEN 304 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 RL+D ++LY + + G P+ LE +EK + V Sbjct: 305 RLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAV 340 >gi|254459689|ref|ZP_05073105.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2083] gi|206676278|gb|EDZ40765.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium HTCC2083] Length = 364 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 190/339 (56%), Gaps = 19/339 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R +G T NP+V C+IV G ++GRG T GG PHAEV AL +AG+ Sbjct: 5 DQAYMKMALSLARRGLGRTWPNPAVGCVIVNAGRIVGRGWTQVGGRPHAEVVALVQAGKR 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPC+H+G++PPC++ +IE GI RVV ++D D RVSGRG L G++V Sbjct: 65 ANGATAYVTLEPCAHHGQTPPCSEALIEAGIARVVAAMEDSDPRVSGRGFAQLRGAGVVV 124 Query: 127 DR------MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + ES FL + R +TLK+A+S D I S ITG ++ Sbjct: 125 ETGICAKDAAESNAGFFLKTEVGRPF-----VTLKLALSLDGRIATLTGDSQWITGSEAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH +RA DA+L+G GT DDP LT R G+ H P+R++ K+ L+S + KTA Sbjct: 180 RAVHAMRATHDAVLIGAGTARGDDPSLTVRGLGIG-HQPVRVVAAQSLKIDLESSLAKTA 238 Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYC--DCRDLK--KLLTILVGRGVTSLLVEG 294 PV + +D D A A+ +I C D L+ +++ L +G+T + EG Sbjct: 239 RDVPVWLCHGSDVKDEDRA-AWIDLGAELIACETDASGLEPHQMMQALGHKGLTRVFCEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 G +A S + + LVD ++++ + + IG G+ G+ Sbjct: 298 GGHLAASLLRADLVDRLVIHSAGVAIGGDGLAGLASMGH 336 >gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium sp. 'sapolanicus'] gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium sp. 'sapolanicus'] Length = 381 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 200/370 (54%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL ++ G S NP V ++VK+G +IG G + G PHAEV AL+EAG+ Sbjct: 9 DIRYMARALEIAKKGEGSASPNPMVGAVLVKNGEIIGEGYHKFYGGPHAEVYALKEAGQN 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A A Y+TLEPCSHYG++PPCA +I+ GI+R V+ + DP+ VSGRG++ L + GI V Sbjct: 69 ANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELLKEAGIEV 128 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +M + K +L ++ LK A + D I + S IT ++ + H Sbjct: 129 ELGLMAEKAKDLNEVFLKYITSDYPYVYLKKAQTLDGFIASSTGHSKWITNEKARLEGHK 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAI+VGIGTVLADDP LT RL +R+ILDP + LD+KII A Sbjct: 189 LRHKVDAIMVGIGTVLADDPSLTTRLEEQGGIDSLRVILDPELDMPLDAKIINQESTAST 248 Query: 246 IIVT-------------ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287 +++ E + +LA K N++II + L +L L + Sbjct: 249 LLIASEASLESNSAALMEKKEKLLA----KNNVDIIAVPLEEEGFLNLDFILRQLHDLNI 304 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILY-RSQIVIGEGGIPSPLEEG----YLEKNFMCVR 342 +S+L+EGGA +++SF+N L+D + +I G+ GI S +G K+ + Sbjct: 305 SSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGGDDGISSFCGQGPKLMSDSKDIKILD 364 Query: 343 RDYFGSDVCL 352 R + G ++ L Sbjct: 365 RRFLGDNILL 374 >gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum BKT015925] gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum BKT015925] Length = 372 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 205/381 (53%), Gaps = 32/381 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M A+ S+ +G T NP V +IVKD +IG G Y G HAE+ AL+ E Sbjct: 1 MDLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDNKIIGEGYHQYFGENHAEINALKNVKE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYG++PPCA I++ GI++V++ + DP+ V+GRG++ L GI Sbjct: 61 DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++E E K ++ K LK A++ D I S I+ IS+ VH Sbjct: 121 VIQGVLEEEIKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEISRQYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + I+VGIGT+L D+P LT RLN + RII+D ++ ++SK++ A Sbjct: 181 EIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRIIIDSKGRIPVESKVLNLESEAN 240 Query: 245 VIIVTENDDPVLALAFRKKNINII-----------YCDCR-DLKKLLTILVGRGVTSLLV 292 IIVT LA R+K I +I CD R DLK L+ L R + S+L+ Sbjct: 241 TIIVT------TELASREK-IEVIRSKGAEVIITPLCDDRVDLKYLMRELGERNIDSVLL 293 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDY 345 EGGA + +S +N +VD +I + S +IG +P+ G + K N ++ Sbjct: 294 EGGAELNYSALNEGIVDKVISFISPKIIGGKEAKTPV--GGVGKSAISECVNLENIKVSQ 351 Query: 346 FGSDVCLE-YIG--KNLCLQE 363 F D+ +E YI K LC QE Sbjct: 352 FEEDIVIEGYIKGEKKLCSQE 372 >gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912] gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912] Length = 371 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 205/366 (56%), Gaps = 13/366 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V +IVKDG ++G+G G PHAEV AL AGE+ Sbjct: 3 DEDWMRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC H+GR+PPC++ +IE G+ RVVV + DP+ V+G G++ L Q G+ V Sbjct: 63 ARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E + + ++ R R + KIA++ D I S ITG ++ +VH Sbjct: 123 EVGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR++ DA++ G+GTV+ADDP LT R G P+R++LD ++ D++I+ T Sbjct: 183 LRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPT 242 Query: 245 VIIVTENDDP---VLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298 V+ P V LA R ++ +I D + DL+++ L GV + LVE G + Sbjct: 243 VVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 S S LVD ++ + + ++ GIP+ EG +E+ + + G +E +G++ Sbjct: 303 QGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEG-VERLAQSAQLEITG----VETVGED 357 Query: 359 LCLQEL 364 L + L Sbjct: 358 LKVTAL 363 >gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424] gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424] Length = 362 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 187/335 (55%), Gaps = 3/335 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SSFD M + +R G TS NP V +IVKDG VIG G G PHAEV AL++ Sbjct: 2 TSSFDREMMQHCINLARQAAGKTSPNPMVGAVIVKDGQVIGEGFHPKAGQPHAEVFALKQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E+A+GAT Y++LEPC+HYGR+PPC + +IE + +VV+ + DPD RVSG G++ L + Sbjct: 62 AAEQAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQEA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V + E + ++ R + K+ LK A++ D I S ITG S+ Sbjct: 122 GIEVVVGVEEDACRRLNEGFIHRVLSKKPFGILKYAMTLDGKIATTSGHSAWITGEASRR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA DA+++G TV D+P LT +G+ H+P+R+++ L L++ + +T+ Sbjct: 182 LVHHLRASCDAVIIGGNTVRQDNPHLTS--HGVSSHNPLRVVMSRSLNLPLEAHLWETSQ 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + ++ E +P L K+ + +I +++ L RG +S+L E G +A Sbjct: 240 VPTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYERGFSSVLWECGGILAAR 299 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 I +V ++ + + +IG PSP+ + LEK Sbjct: 300 AIAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEK 334 >gi|121634268|ref|YP_974513.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis FAM18] gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis FAM18] gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Neisseria meningitidis alpha153] gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190] gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ES14902] Length = 369 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 179/327 (54%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT 1] gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT 1] Length = 367 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 188/329 (57%), Gaps = 7/329 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL + G TS NP V ++VKDG +G G G PHAE+ ALEEAGE Sbjct: 4 DERYMWLALDLAAQGQGTTSPNPMVGAVLVKDGETVGTGYHQKAGGPHAEIIALEEAGEA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH G++PPC II G+R+VVV + DP+ V+G GL+ L + GI V Sbjct: 64 ARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGIKV 123 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + L+ + + +R +T+K A++ D I S I+G S+ H Sbjct: 124 KSGVLEEKALRLNEVFVKYITSRRPFVTMKAAMTMDGKIATRTKASRWISGERSREFGHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR +DAI+VGIGT+LAD+P LT RL ++ P+RI++D LDSK++ + Sbjct: 184 LRHHTDAIMVGIGTLLADNPSLTTRLPEGGKN-PLRIVVDSKANTPLDSKVVAENPEKTL 242 Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAH 300 I VT+ + + + AL + + ++ D L L+ L ++S+LVEGG+ + + Sbjct: 243 IFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLLMDNLGKHEISSVLVEGGSVLNY 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S + S LVD + + + ++ G P+P+ Sbjct: 303 SLLASGLVDKVYFFMAPLIFGGDTAPTPV 331 >gi|91763228|ref|ZP_01265192.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1002] gi|91717641|gb|EAS84292.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1002] Length = 366 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 193/359 (53%), Gaps = 16/359 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++ + E Sbjct: 12 DKIFMELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHEN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 G+ YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L+ L K I+V Sbjct: 72 IEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLKILKSKNILV 131 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ + F Y + + ++T KIA+S++N+I + I+ + H Sbjct: 132 KKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDKFTHF 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++D++++ T+ DDP+L CR+ GL + SP RIILD + ++ +S I KTA Sbjct: 190 LRYKNDSLMISSKTLNKDDPKLNCRIKGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNT 249 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II N + L +KK I +I + D+K +L L G +LLVEGG ++ Sbjct: 250 IIFYHNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKH 309 Query: 302 FINSRLVDSIILYR-----SQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 I +L + LY+ S++V E G L++ Y K F ++ G DV Y Sbjct: 310 IIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNK-FKINKK--LGKDVITLY 365 >gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223] gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223] Length = 384 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 192/336 (57%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL A Sbjct: 8 SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L G Sbjct: 68 GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L G+++ P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 + + A+++P+I+V+ P A +++ + L +LL+ L G+ Sbjct: 248 SAACL--AIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQG 340 >gi|218767600|ref|YP_002342112.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis Z2491] gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis Z2491] Length = 369 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327 >gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014 str. F0314] gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 8/321 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M AL +R TS NP V C+I G ++G+G G PHAEV AL +AGE Sbjct: 6 DVRMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGEM 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L I Sbjct: 66 ARGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAADIRT 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E+E + +L+R R + +K A S D ++ S ITG ++ V + Sbjct: 126 ESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAAREDVQI 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+S A++ G+GTVLAD+P+L R P+R+I D + D +II+ +PV Sbjct: 186 LRAESCAVVTGVGTVLADNPQLNVRAFPTVRQ-PVRVIADSRLQTPPDCRIIRDG-GSPV 243 Query: 246 IIVTENDDPVLALAF-RKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I T + D AF R ++ II D R DL LL IL +G ++VE GA ++ Sbjct: 244 LIATLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAVLSS 303 Query: 301 SFINSRLVDSIILYRSQIVIG 321 +F+ L D ++LY++ ++G Sbjct: 304 AFLAEDLADELVLYQAPKILG 324 >gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans DSM 771] gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans DSM 771] Length = 367 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 195/366 (53%), Gaps = 22/366 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL + G TS NP V +IVK+G V+GRG G PHAE+ AL+EAGE Sbjct: 1 MDEQYMKMALDLAARARGRTSPNPMVGSVIVKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGAT YVTLEPC H+GR+ PC + I+ GI+R VV + DP+ V+G+GL L + G+ Sbjct: 61 AARGATIYVTLEPCCHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGVE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ E ++ + LK A+S D I S ITG S+ VH Sbjct: 121 VVSGLLAEEAAKLNEVFIKYVSTGMPFVLLKTAMSLDGKIAAYTGHSRWITGSASRAYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR DAIL+GIGT++AD+P LT RL +G++ P+R+I+D + ++K++ Sbjct: 181 HLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGKDPVRVIVDSLARTPPEAKVLTQI 240 Query: 241 LLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 AP II P V L I I + DL L L +TS+L+EGGA Sbjct: 241 SAAPTIIAITAAAPEERVQKLVAAGAQIIIAGNGPKIDLPYLFKSLTAIDITSILIEGGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL---------EEGYLEKNFMCVRRDYFG 347 AV S + +L D ++ + + +IG P P+ E LE+ + V+R F Sbjct: 301 AVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGRGVAAVSEALLLER--ISVQR--FE 356 Query: 348 SDVCLE 353 D+CLE Sbjct: 357 EDICLE 362 >gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT 12067] gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT 12067] Length = 388 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 207/374 (55%), Gaps = 23/374 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V C+IV +G ++G G G PHAEV AL EA + Sbjct: 17 DEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNALAEAKQ 76 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GATAYVTLEPC+HYGR+ PC + GI +VVV DP+ +V+G+GL++L +GI Sbjct: 77 MAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLRLQGIE 136 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E E K + T ++R ITLK A++ D I A S ITG ++ H Sbjct: 137 VVTGVCEKEAKRLNERFFTWITKQRPFITLKYAMTLDGKIATATGDSKWITGEEARTFAH 196 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR Q DA+LVGIGTVL DDPELT RL ++ +P+R++LD K+SL + ++ LA Sbjct: 197 RLRKQHDAVLVGIGTVLEDDPELTTRL--VRGKNPVRVVLDSSLKISLMAAVLNP--LAD 252 Query: 245 VIIVTEND-DPVLALAFRK-KNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 II T D D V A A N+ ++ D + +++ L RG+ SLLVEGG+A+ Sbjct: 253 TIIFTGLDSDIVKAEALAALPNVEVVRLPLADGVLPVAQVVQALAERGIASLLVEGGSAI 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGE-------GGIPSPL-EEGYLEKNFMCVRRDYFGSDV 350 + ++ L D + + + +IG GG S L E G+ V + GSDV Sbjct: 313 HGALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGSSLVETGW---QLTEVEMEKLGSDV 369 Query: 351 CLEYIGKNLCLQEL 364 + + L QEL Sbjct: 370 LITGLVPELDKQEL 383 >gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) [Neisseria meningitidis WUE 2594] Length = 369 Score = 212 bits (540), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 126/327 (38%), Positives = 180/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I V+G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327 >gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70] Length = 376 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 188/336 (55%), Gaps = 15/336 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D +M AL + T+ NPSV C++VKDGI++GRG G HAEV AL Sbjct: 2 MTFTAQDVVYMQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARGATAYVTLEPCSH+GR+PPCAQ +I+ G+ +VV + DP+ +V+GRGL LS Sbjct: 62 REAGENARGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLS 121 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +E +L+ +L R R ++ LK+A+S D MA S ITG ++ Sbjct: 122 DAGIESAVGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHF 228 + V RA++ AIL TVLADDP L R L Q P+R+ILD Sbjct: 182 RADVQAERAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ ++ +L +PV +V++ +L + I + L L+ L R + Sbjct: 242 RVQPSHRLF--SLSSPVWLVSQTARSLLEFPAHCEQIQ-LSASTNALADLMAELGQRQIN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +L +E GA +A + I ++LVD +I+Y + ++G+ Sbjct: 299 TLWIEAGATLAGALIEAKLVDELIIYIAPKLLGDAA 334 >gi|304410191|ref|ZP_07391810.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183] gi|307302098|ref|ZP_07581856.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175] gi|304351600|gb|EFM15999.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183] gi|306914136|gb|EFN44557.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175] Length = 384 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 194/339 (57%), Gaps = 24/339 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL A Sbjct: 8 SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L G Sbjct: 68 GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L G+++ P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR 285 + + A+++P+++V+ P F+ + ++ + C L +LL+ L G+ Sbjct: 248 SAACL--AIVSPILLVSTVAYPA---EFQAQLLSHVSCLVLPAIAGRVSLPELLSYL-GQ 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELMLYQAMKILGGQG 340 >gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. MR-7] gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. MR-7] Length = 381 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 141/346 (40%), Positives = 194/346 (56%), Gaps = 32/346 (9%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + + L+ ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR------LNGL----QEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLADDP L R LN L Q P+R+ILD + Sbjct: 181 RRDVQRLRIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLA---PVIIV-TENDDPVLALAFRKKNINIIYC------DCR-DLKKL 278 + IK ALLA P+++V TE P AF + + + C D R L L Sbjct: 241 MP-----IKAALLAIESPILLVSTEPYSP----AFMAQLPSHVTCLQLPAIDGRISLPTL 291 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L+ L G+ +L+E GA +A +FI + L D ++LY++ V+G G Sbjct: 292 LSYL-GKSCNQVLIEAGATLAGAFIGAGLADELVLYQAMKVLGAQG 336 >gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905] gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905] Length = 375 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 186/325 (57%), Gaps = 7/325 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A Sbjct: 6 MTNKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFRM 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+ AT YVTLEPCSH+G++PPCA + E G+ RVVV + DP+ V+GRG+Q L Sbjct: 66 AGEHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRDA 125 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E + + ++ + KR + K A++ D I S +TG ++ Sbjct: 126 GIAVEVGVLEQQARRLNERFIHNMLTKRPFVISKFAMTVDGKIATHTGHSKWVTGDAARE 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ + T Sbjct: 186 DVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRSPLDANVFNTE- 244 Query: 242 LAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGA 296 AP I+V N+ + +F K + ++ + +L ++L L G+T +L+EGG+ Sbjct: 245 EAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDEMLARLYEHGITDILLEGGS 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 V SF+ +D ++Y + V+G Sbjct: 305 KVNASFLQQGAIDKYVIYVAPKVLG 329 >gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271] gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271] Length = 379 Score = 212 bits (539), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 182/324 (56%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPLVSGNGKKRLEEAGIDV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + S +IK L+ Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVIKDGLVPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V ++ + ++ +N+ I + +++ LL L + + SL VEGG ++ SF+ Sbjct: 251 IFVGKDVNKEKIASYESENVTIFQMKTKQIEIEDLLFFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 ++ + II Y S I+IG P+ Sbjct: 311 QTKHFNEIITYISPILIGGKDAPT 334 >gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC 23834] gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC 23834] Length = 364 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 194/361 (53%), Gaps = 8/361 (2%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP S D M A+ + TS NP V C+I + G ++G+G G PHAEV A Sbjct: 1 MPQFSHADHALMQQAIALAWQGRFSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG A+GATAYVTLEPC+H+GR+PPCA+ +I G+RRVV + DP+ V G+GL L Sbjct: 61 LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V +ME E + +L+R R + LK A S D +A S ITG Sbjct: 121 EAAGIQVACGLMEREARQLNRGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ V + RA+S A+L GIGTVLAD+P LT R + P+R++LD +L S ++ Sbjct: 181 ARHDVQIQRAESCAVLTGIGTVLADNPRLTVR-DFPTLRPPLRVLLDSRLRLPAGSHLLD 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + AP +I T +D P A A + L +L L RG+ L++E GA + Sbjct: 240 GS--APTLIYTLSDRPAPAGAAEICRLEADAQGRLSLNAVLADLAARGIGELMLEAGATL 297 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +F+ LVD I+ Y++ ++G P+ L +N + R+ V +E +G + Sbjct: 298 GSAFLAQDLVDEIVCYQAPKLLGGAQSPTLFR---LPENPAALSREPDWHTVGIEQLGDD 354 Query: 359 L 359 + Sbjct: 355 I 355 >gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M04-240196] Length = 369 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327 >gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. HL-EbGR7] gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. HL-EbGR7] Length = 369 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 186/331 (56%), Gaps = 15/331 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D R M+ AL+ +R + T NP V C++V+DG V+G G G PHAE+ AL + Sbjct: 2 TTETDTRHMARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H+GR+PPCA +I G+ RVV + DP+ RV+G+GL L+ Sbjct: 62 AGEAARGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLTAA 121 Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++E+E + +++R + R ++ +K+A+S D MA S ITG ++ Sbjct: 122 GITTASGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDS 234 V LRA++ AIL G GTVLAD+P L RL+ QE P+R++LD + ++ Sbjct: 182 DVQRLRARAGAILTGSGTVLADNPGLDVRLSA-QELGIEGPVRQPLRVVLDTRLACTPEA 240 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCR--DLKKLLTILVGRGVTSL 290 K+ T P +++T D + + + R DL +L +L RG+ L Sbjct: 241 KLFTTG--GPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINEL 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + LVD +++Y + ++G Sbjct: 299 HVEAGPILCGSLMQAGLVDELVIYMAPHLMG 329 >gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/339 (37%), Positives = 181/339 (53%), Gaps = 28/339 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R T NP V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 10 LDAHYMARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAEVHALRAAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGLQ L+Q GI Sbjct: 70 QARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIA 129 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + +L R + + +K+A+S D M S ITG +++ V Sbjct: 130 TESGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234 LRAQ+ +L G TVLAD+ LT R + L P+R+++D ++ LD+ Sbjct: 190 RLRAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVDGRLRVPLDA 249 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGV 287 K P ++ T +A ++ N C D + DL +LL L GRGV Sbjct: 250 AFFKA---GPALVAT-------CMAVEEQYANGPECMIVAGDDGQVDLHRLLVELAGRGV 299 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G +A +F LVD ++ + +G P Sbjct: 300 NEVLVEAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARP 338 >gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase, RibD [Shewanella putrefaciens 200] Length = 384 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL A Sbjct: 8 SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L G Sbjct: 68 GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L Q P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288 + + A+++P+++V+ P A +++ + + L +LL+ L G+ Sbjct: 248 SAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340 >gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC 43768] gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC 43768] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 182/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + TS NP V C+I + G V+G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GKMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ ++ESE K +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKMECGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPYSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGG 327 >gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens MI-1] gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfotomaculum reducens MI-1] Length = 376 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/329 (38%), Positives = 181/329 (55%), Gaps = 6/329 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL + G TS NP V ++VKDG V+G+G A G HAEV AL +AG+ Sbjct: 4 DRHYMNMALELAAKARGRTSPNPMVGAVLVKDGEVVGKGFHAKAGGAHAEVVALADAGDR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPC H+G++ PC + + + G++RVV + DP+ V+G+GL L GI + Sbjct: 64 AKGATVYVTLEPCCHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E K ++ K I LK A S D I A S ITG ++N H Sbjct: 124 VSGLLEEEAKELNEVFIKYITTKIPFIVLKAATSLDGKIATASGESKWITGDTARNYGHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVG+ TVLADDP LT RL + P+RII+D + +KI+ A Sbjct: 184 LRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPLRIIVDSMSRTPTSAKILTQESAAHT 243 Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T PV A +I DLKKL+ +L + ++S+L+EGG ++ Sbjct: 244 IIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDLKKLMVLLGEKQISSVLIEGGGKISG 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S +N+ +VD + + + +IG P P+ Sbjct: 304 SALNAGIVDKVAWFIAPKIIGGDLAPGPV 332 >gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM 30120] gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM 30120] Length = 371 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/331 (38%), Positives = 181/331 (54%), Gaps = 15/331 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A ++ TS NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 5 DRIYMARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH+GR+PPCA+ +I GI RVV + DP+ +V+GRGL L+Q GI Sbjct: 65 AKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGIET 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + +L R +I LK+A S D +A S IT ++ V + Sbjct: 125 ASNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARKDVQV 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQ+ AIL TVLADDP LT R N L E P+RI+LD H +++ D Sbjct: 185 LRAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRITPDH 244 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 K+ T L +V D + + + I D DL L+ L R V S+ VE Sbjct: 245 KV--TQLEGECWLVRPTPDTAVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNSIWVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A S + LVD +I+Y + ++G+ Sbjct: 303 AGAKLAGSLLKLGLVDELIVYIAPKLLGDAA 333 >gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis OX99.30304] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4] gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4] Length = 360 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/327 (41%), Positives = 180/327 (55%), Gaps = 12/327 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AGE+ Sbjct: 3 DIDYMKLALTLAEQTRGQTSPNPMVGSVVVKDGAIVGMGAHLKAGEGHAEVNALKMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPCSHYG++PPCA IIE ++RVVV DP+ VSGRG++ L GI V Sbjct: 63 AEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGITV 122 Query: 127 D-RMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 D + E+E ++F H T KR +T+K A + D S ITG ++ Sbjct: 123 DVGVCEAEAIELNRMFFHFIQT----KRPFVTMKTASTLDGKTATVTGESKWITGEEARL 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH R DAILVGIGTVL+D+P LT RL NG + +P+RIILD H +L S++ Sbjct: 179 DVHRDRHIHDAILVGIGTVLSDNPALTTRLPNGGR--NPIRIILDRHLRLPESSQVACDQ 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + TE+ A R +++I + +L L R V +L VEGG V Sbjct: 237 AAKTWVFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKELGKRRVMTLYVEGGQEVNG 296 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 SFI R V+ +I Y + +IG P+ Sbjct: 297 SFIKERAVNQVITYVAPKMIGGKNAPT 323 >gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2] gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 196/361 (54%), Gaps = 18/361 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A++ +R +G TS NP+V +IVK+G V+ G G PHAEV+A + G Sbjct: 5 DTHFMKLAVKEARKGLGRTSPNPAVGAVIVKEGRVVASGFHKQAGMPHAEVEAFRKVGNR 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC+H+G++PPC + I++ G++RVVV + DP+ V+G G +L +KG+ + Sbjct: 65 APGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKKGLEV 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E A+ R + K A++ D + S IT S++ VH Sbjct: 125 VTGILEDECIRLNEAFTKFITTGRPFVIAKSAITLDGWTATSAHHSQWITNEKSRHFVHR 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DA+L+GIGTVLADDP +T RL + P RI++D +F+ +K++K AP Sbjct: 185 LRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTRIVVDTNFRTPAGAKVMKHDSTAPT 244 Query: 246 IIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 II T E + K + + C D DL L+ L +TS+LVEGG+ + Sbjct: 245 IIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDLNWLMDKLGEMSITSILVEGGSMIL 304 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF--------MCVRRDYFGSDVC 351 + I ++L+D ++ + ++G GG P+ G K VRR FG DV Sbjct: 305 GAMIRAQLIDKFYVFIAPKILG-GGDGIPMAAGAGPKTMDDSLGLKDTSVRR--FGDDVL 361 Query: 352 L 352 + Sbjct: 362 I 362 >gi|260441248|ref|ZP_05795064.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae DGI2] gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18] gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2] gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18] gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 183/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L DS+++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 +I E ++ L + ++ I+ DL +L+ +L G G ++VE GA Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 KLTSAFLAENLADEIVLYRSPKILGIG 327 >gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29] gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29] Length = 379 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I AL Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDALAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1 str. 28L] gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1 str. 28L] Length = 378 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 180/323 (55%), Gaps = 9/323 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M AL ++ +G TS NP V C+IVKDG ++G G G PHAEV AL+EAG+ A Sbjct: 4 AEYMKKALALAKIALGYTSPNPVVGCVIVKDGEIVGTGYHHQAGAPHAEVLALQEAGDRA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YVTLEPC+HYGR+PPCA+ +++ I++VV+ + DP+ V+G+G L Q GI+V+ Sbjct: 64 TGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGIVVE 123 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ +E ++ + I +K+A S D I S IT S+ L Sbjct: 124 VGLLSAEAVKLNEVFIKNMLSNIPFIAIKLAQSLDGCIATRTGHSQWITNAWSRQYGQYL 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTALLA 243 R+ D ILVGI T+L D+P LTCR+ + H P+RI+LD + + L S+++ Sbjct: 184 RSIYDGILVGINTILEDNPLLTCRVRREGQAVPHQPIRIVLDTYGRTPLSSQVVNDKTAR 243 Query: 244 PVIIVT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +I+ T E + +LA C DL L +L G+ S+LVEGG+ + Sbjct: 244 TIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCVDLHAALQLLRQEGIGSILVEGGSTI 303 Query: 299 AHSFINSRLVDSIILYRSQIVIG 321 SF +++LVD I + +IG Sbjct: 304 HGSFFDAKLVDKIYAFLGNSIIG 326 >gi|307265418|ref|ZP_07546974.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919532|gb|EFN49750.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii Rt8.B1] Length = 360 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/330 (37%), Positives = 188/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ +G Sbjct: 4 YMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 MME + + ++ K + LK A+S D I S IT S+ H +R Sbjct: 124 MMEKDARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + +P+RII+D ++ LDS +I+ +I Sbjct: 184 RVSAIMVGVNTVINDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK + I+ D R LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S + R+VD ++ + S +IG +P+E Sbjct: 298 SALKERIVDKVMFFISPRIIGGKNALTPVE 327 >gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555] gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016] gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555] gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 369 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/328 (38%), Positives = 186/328 (56%), Gaps = 8/328 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M AL + G + NP V L+VK+G ++GRG + G PHAEV AL Sbjct: 1 MNYDNKDEHYMEIALELASKGEGFVNPNPQVGALVVKEGNIVGRGYHKFYGGPHAEVYAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +EAG++A G YVTLEPCSHYG++PPC + I+ GI++VVV + DP+ VSGRG+++L Sbjct: 61 KEAGDKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 KGI +V ++E E ++ +K + LK AV+ D I S IT S Sbjct: 121 NKGIEVVTGVLEKEALNINEIFIKYISDKLPFVILKSAVTLDGKIATVTGQSKWITCEES 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N VH +R + AI VGIGT+L+D+P LT RL + SP+ ++LD ++ LD KI T Sbjct: 181 RNFVHHIRNRVMAIAVGIGTILSDNPLLTTRLEK-KCKSPIAVVLDSKLRIPLDCKIFDT 239 Query: 240 ALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293 +II TE D K +++I C + LK L+ L G+ SL +E Sbjct: 240 LKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLKILIEKLGNIGIDSLFIE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GG ++ S ++S +VD +I + + +IG Sbjct: 300 GGGSLNFSALSSGIVDKVIYFIAPKIIG 327 >gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28] gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28] Length = 379 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI V Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIKV 131 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S II L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHIITNTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|163738649|ref|ZP_02146063.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis BS107] gi|161387977|gb|EDQ12332.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis BS107] Length = 358 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/323 (39%), Positives = 182/323 (56%), Gaps = 7/323 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG+ ARGA Sbjct: 1 MSLALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDLARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV+LEPCSH G++PPCAQ +I G+ RVV ++D D RVSG G L GI V + Sbjct: 61 TVYVSLEPCSHTGKTPPCAQALINAGVARVVAAIEDSDPRVSGHGFAMLRDAGIPVTTGV 120 Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 S+ + HA + + + R +TLK+A S D I A S ITG ++ VH +RA+ Sbjct: 121 CSDAAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT ADDP LT R G+ P+R+++ H L L ++ ++A PV I Sbjct: 181 HDAVMVGGGTARADDPSLTVRDLGVARQ-PVRVVISRHLDLPLMGQLARSARDIPVWICH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ ++ C L+ +L L G+T + EGG+A+A S + Sbjct: 240 GAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 LVD +I + + + IG G+ S Sbjct: 300 QDLVDELIGFTAGLGIGGDGLSS 322 >gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24] gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24] Length = 379 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +K +L +L + + SL VEGG V SF Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQIKTKQIKIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334 >gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC 15579] gi|187772177|gb|EDU35979.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC 15579] Length = 364 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 181/320 (56%), Gaps = 10/320 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ ++ G + NP V +++KD +IG G Y G PHAEV AL EAGE+A+G Sbjct: 7 YMEKALKLAKKGEGKVNPNPKVGAIVIKDNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + V+ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEVVTD 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K + LK A + D I S ITG S+ +VH +R Sbjct: 127 IMEKESKELNEVFIKYITKKEPFVVLKTASTLDGKIATKKGESKWITGEESRYRVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGIGT++ D+P LT R+ + SP II+D + ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIE--EGRSPKAIIVDSNLRIPLESKILETINARSIYIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T L+ +N+ + + + LKKL+ L + S+L+EGG+ + S Sbjct: 245 TTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQYLGEEEIDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILYRSQIVIG 321 + +VD ++ + + +IG Sbjct: 305 ALKEGIVDKVMCFIAPKIIG 324 >gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena XCL-2] gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiomicrospira crunogena XCL-2] Length = 391 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/342 (36%), Positives = 191/342 (55%), Gaps = 21/342 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD + M A+ +R + T NP+V C+I + +I G G PHAE AL A Sbjct: 10 SDFDVQMMQRAIDLARKGLYSTKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALANA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E +GAT YVTLEPCSH+G++PPCA +++ G+ RVV+ + DP+ V+G G++ L Q G Sbjct: 70 TESVKGATVYVTLEPCSHHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQAG 129 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I+VD ++ E +++ R + LK+A S D MA S ITG +++Q Sbjct: 130 IVVDSGILSEEAAALNKGFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARHQ 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHS--PMRIILDPHFKLSLD 233 VHL+RAQ AI+ G+GTVLADDP L RL+ GL + P+R++LD + LD Sbjct: 190 VHLMRAQHGAIVTGVGTVLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPLD 249 Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILV-G 284 +K++ +T L+ V +N D L F +K +I D D+ +L+ LV Sbjct: 250 AKMLSLPGRTLLMTSKETVDQNLD--LIERFYQKGAEVIAVESDGDKLDIPSVLSYLVES 307 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + ++VE GA VA +FI + +V+ + ++ + I++GE P Sbjct: 308 ENIYDVMVEAGAIVAGAFIQADVVNELHVFTAPILMGEMAKP 349 >gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185] gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185] Length = 384 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 189/336 (56%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL A Sbjct: 8 SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L G Sbjct: 68 GEHARGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L Q P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 + + A+++P+++V+ P A +++ + L +LL+ L G+ Sbjct: 248 SAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQG 340 >gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC 100599] gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC 100599] Length = 368 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 199/359 (55%), Gaps = 15/359 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M AL +R G TS NP V +IVKDG ++G G G PHAEV AL AGE+ Sbjct: 4 DSKYMDLALELARSARGQTSPNPMVGAVIVKDGTIVGMGAHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++PPCA+ +I +RRVVV DP+ V+GRG++ L G+ V Sbjct: 64 AQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGVEV 123 Query: 127 D-RMMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + E E K +F H TR R +T+K A + D I S ITG ++ Sbjct: 124 AVGVREEEAKALNEVFFHYIQTR----RPFVTVKTASTLDGKIASFTGHSRWITGAEARA 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240 +VH LR Q DAILVG+GT+LADDP LT R + S P+R+ILD + LD+ +++ A Sbjct: 180 EVHELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPVRVILDSQLRTPLDAHVVQNA 239 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 I T+ + + +I ++K+L L G+TSLLVEGG V Sbjct: 240 DAKTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVLDTLGELGITSLLVEGGQEVN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 SF+ +R + ++ + + +IG PSP + + F + ++V + IGK+ Sbjct: 300 GSFLQARAIQKVVSHIALKLIGGSSAPSP----FGGQGFSTMGEAVQLANVTITPIGKS 354 >gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136] Length = 369 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+ +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPQLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4] gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella loihica PV-4] Length = 386 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 206/374 (55%), Gaps = 24/374 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S FD++ M+ A++ +R TS NP+V C+IV+ ++G G G PHAEV AL Sbjct: 5 MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVVV V DP+ +VSGRG++ L Sbjct: 65 RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI+V+ + E L+ ++ R + +K+A S D ++ S ITG + Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229 + V +RA+ DA++ GI TVLADDP L R L L E P+R++LD + Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 L +K+ +T +PV++V+ P + + ++ + + LK LL L G Sbjct: 245 LGAKAKLFETQ--SPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHL-GS 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340 + S++VE GA +A +F+ L D ++LY++ ++G G +P E L +C Sbjct: 302 QLNSVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLC 361 Query: 341 VRRDYFGSDVCLEY 354 R G+D L + Sbjct: 362 DER-AIGADRRLTF 374 >gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis ZC1] gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis ZC1] Length = 370 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 195/360 (54%), Gaps = 18/360 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M AL + G T+ NP V +IVK+G+++G G+ G PHAEV A AG Sbjct: 3 NVDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNGVIVGTGLHRKAGEPHAEVHAFRMAG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A GAT YVTLEPCSHYG++PPCA + E G+ RVVV + DP+ V+GRG+Q L GI Sbjct: 63 EHAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDAGI 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ ++E + + ++ + R + K A++ D I S +TG ++ V Sbjct: 123 VVEVGVLEQQARRLNERFIHNMLTHRPFVISKFAMTLDGKIATHTGHSKWVTGEAAREDV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + D ILVG+GTV+AD+P LT RL +P RII+D + ++ ++ T A Sbjct: 183 HNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRIIMDSSLRTPDNANVLNTE-DA 241 Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 P I+V +D + F +K + ++ + + ++L L G+T +L+EGG+ + Sbjct: 242 PTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEMLEKLYMHGITDILLEGGSKI 301 Query: 299 AHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SF+ +D ++Y + V+G G PS ++E + N D G D+ Sbjct: 302 NASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMDEAW---NVEFASFDKIGEDL 358 >gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1] gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. W3-18-1] Length = 384 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL A Sbjct: 8 SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L G Sbjct: 68 GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L Q P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288 + + A+++P+++V+ P A +++ + + L +LL+ L G+ Sbjct: 248 SAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340 >gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342] gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342] Length = 379 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI V Sbjct: 72 AKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + L+ Y ++ KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTVVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEDARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGKDVNPEKIASYESENITIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334 >gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 379 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 183/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKHFNEIVTYISPKLIGGSNAPT 334 >gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61] gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52] gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61] gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52] Length = 380 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI V Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQTDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 + V+ +I Y + +IG G P+P+ Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327 >gi|240114937|ref|ZP_04728999.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID18] Length = 361 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 118/306 (38%), Positives = 177/306 (57%), Gaps = 9/306 (2%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 TS NP V C+I ++G+G G PHAEV AL +AGE A+GATA+VTLEPCSHYGR Sbjct: 16 TSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAKGATAFVTLEPCSHYGR 75 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143 +PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + ++E++ + +L+ Sbjct: 76 TPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECGLLENKARELNRGFLS 135 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R +R + LK AVS D ++ S ITG ++ V +LRA+S A+L GIGTVLAD Sbjct: 136 RIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRAESCAVLTGIGTVLAD 195 Query: 204 DPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 +P L R L++ P RI+LD +L DS+++ +I E ++ L + Sbjct: 196 NPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQSPTLIATLERNEDRLRPYRKH 253 Query: 263 KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ I+ DL +L+ +L G G ++VE GA + +F+ L D I+LYRS Sbjct: 254 AHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAFLAENLADEIVLYRSP 313 Query: 318 IVIGEG 323 ++G G Sbjct: 314 KILGIG 319 >gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241] gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241] Length = 370 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 183/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKHFNEIVTYISPKLIGGSNAPT 325 >gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18] gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18] Length = 379 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens CN-32] gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella putrefaciens CN-32] Length = 384 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 188/336 (55%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL A Sbjct: 8 SALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L G Sbjct: 68 GERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L Q P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 + A+++P+++V+ P A +++ + L +LL+ L G+ Sbjct: 248 SVACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHG 340 >gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3] gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3] Length = 380 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI V Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 + V+ +I Y + +IG G P+P+ Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327 >gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Neisseria meningitidis 8013] Length = 369 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL+ + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SETDISMMQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSG 327 >gi|253581821|ref|ZP_04859045.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium varium ATCC 27725] gi|251836170|gb|EES64707.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium varium ATCC 27725] Length = 358 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 207/362 (57%), Gaps = 21/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE+ Sbjct: 2 DKKYMERALELAALGEGYVNPNPMVGAVVVKDGKIVGEGYHKKYGGPHAEVFALEEAGEK 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPCSHYG++PPCA+ II+ GI+R ++ DP+ VSGRG++ ++ GI + Sbjct: 62 AEGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIEV 121 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V +ME E ++ K ++ LK ++ D I S IT +++ +V Sbjct: 122 VTGIMEKEALELNRVFMKYISTKVPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQK 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVLADDP LT R+ NG +P R+++DP + +DSK + Sbjct: 182 LRNKYMGIMVGINTVLADDPSLTARIENG---RNPYRVVIDPFLDIPIDSKFVNFEDGKS 238 Query: 245 VIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVAH 300 ++I + N+ ++F +KKN+N+I+ + D KL IL +G G+ +L+EGG+ + Sbjct: 239 ILITSYNNVEKERISFLKKKNVNVIFLEGIDF-KLYDILKKIGEIGIDGVLLEGGSFLIS 297 Query: 301 SFINSRLVDSIILYRSQIVIGEG-GIP-------SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + ++D ++ + ++G+ IP + +G+ +N V+ + +G++V + Sbjct: 298 KAFSEDVIDGGEIFIAPKILGDDKAIPFIKGFNFENISDGFQLRN---VKINNYGNNVSM 354 Query: 353 EY 354 E+ Sbjct: 355 EF 356 >gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis RibD oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein [Xanthomonas albilineans] Length = 369 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 123/325 (37%), Positives = 178/325 (54%), Gaps = 4/325 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+D +G G G PHAEV AL A Sbjct: 5 SAADHRWMAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFALRAA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVVV + DP +V+G G L + G Sbjct: 65 GEYARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALLREAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +ME + + +L+R R + +K+ S D +A S ITG ++ Sbjct: 125 IAVQSGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAAARQD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTVLADDP LT RL E P+R++LD + SK+ A Sbjct: 185 VQRWRARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRTLARSKVRDGA- 243 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + L + ++ DL +L +L RG+ + VE GA + + Sbjct: 244 -APTLYLHAPASVPPTLPNAEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGATLGGA 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 + + +VD +++Y + +++G+ P Sbjct: 303 LLRAGMVDEVLVYLAPVLLGDAARP 327 >gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155] gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella baltica OS155] Length = 384 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/336 (38%), Positives = 191/336 (56%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL A Sbjct: 8 SVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L G Sbjct: 68 GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232 V LR +S A++ GI T+L DDP L R L G+++ P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 + + A+++P+++V+ P A +++ + L +LL+ L G+ Sbjct: 248 SAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQG 340 >gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92] gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92] Length = 379 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 188/335 (56%), Gaps = 16/335 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ A+ ++ + T+ NP V C++VKD +++G G G HAEV A+ +AG+ Sbjct: 9 DHRYMARAIVLAKQGLYTTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEVNAMAQAGDL 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ +V+GRG+Q L GI Sbjct: 69 AKGATAYVTLEPCSHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESAGISA 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E+E + ++ R ++LKIA S D MA S ITG +++ V Sbjct: 129 ESGLLEAEARALNPGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARSDVQK 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKII 237 LRA+S AIL G+ ++L D+ LT R L + P+R++LD + + +D+ I+ Sbjct: 189 LRARSSAILTGVESILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPIDASIL 248 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVG-RGVTSLLV 292 +I T + D V+ + +I DL LL L G LLV Sbjct: 249 SQP--GRTLIATISKDAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCNELLV 306 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 E GA +A +FI+++LVD + LY + ++G P+ Sbjct: 307 ETGATLAGAFIDAKLVDQLHLYMAMTLMGSSARPA 341 >gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568] Length = 369 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327 >gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58] gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58] gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385] Length = 369 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 180/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327 >gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426] gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino)uracil reductase ) [Geobacillus kaustophilus HTA426] Length = 380 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 133/326 (40%), Positives = 187/326 (57%), Gaps = 5/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGGHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI V Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVVADK-EAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 + V+ +I Y + +IG G P+P+ Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPV 327 >gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195] gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195] gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678] Length = 384 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 18/336 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + MS A++ +R T NP V C+IVKD ++G G G PHAEV AL A Sbjct: 8 SVLDTQMMSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L G Sbjct: 68 GEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAG 127 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD + + L+ ++ R +T+K+A S D ++ S ITG S+ Sbjct: 128 IEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFKLSL 232 V LR +S A++ GI T+LADDP L R L GL++ P+R+ILD +L L Sbjct: 188 VQRLRLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRARLPL 247 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 + + A+++P+++V+ P A +++ + L +LL+ L G+ Sbjct: 248 SAACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYL-GQSCN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +LVE GA +A +F+ L D ++LY++ ++G G Sbjct: 305 HVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQG 340 >gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf] gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4 str. 657] gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf] gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4 str. 657] Length = 365 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/361 (34%), Positives = 198/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+G Sbjct: 7 YMEKTLKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTE 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++++V +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGI TV+ DDP LT R+ G + SP II+D + ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIDTVIKDDPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETLSKRAIYIA 244 Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T ++ +P A ++ + L KL+ L GV S+L+EGG+ + S Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMEYLGTEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD I+ + S+ +IG GI S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|259416594|ref|ZP_05740514.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B] gi|259348033|gb|EEW59810.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B] Length = 366 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 140/362 (38%), Positives = 200/362 (55%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RFM AL R G T NP+V C+IVK G V+GRG T GG PHAE AL + Sbjct: 1 MSKSDHRFMGLALSLGRRGQGRTWPNPAVGCVIVKQGRVVGRGWTQPGGRPHAEPMALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GATAYV+LEPCSH+G++PPCAQ +I+ GI RVV ++D D RVSG+G + L Sbjct: 61 AGAAAHGATAYVSLEPCSHHGKTPPCAQALIDAGIARVVAAIEDSDPRVSGQGFEMLRAA 120 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + +E F H + R + R +TLK+A S D I S ITG ++ Sbjct: 121 GIKVTTGIRTEEAGFDHEGFFLRTEQGRPFVTLKLASSFDGRIATGSGQSQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G+ +H P R+++ H L L S++ ++A Sbjct: 181 MVHAMRARHDAVMVGAGTARADDPSLTVRDLGI-DHQPARVVVSRHLDLPLMSQLARSAK 239 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 P+ + D A+ ++ C+ D +L L G+T + EGG Sbjct: 240 DIPLYLCHGTGADTERLRAWEGLGAQLLSCNALGTQLDPHDVLEQLGSAGLTRVFCEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCL 352 A+A + + LVD +I + + + IG G+PS L G+L++ F + G+D+ Sbjct: 300 ALAATLLAHDLVDELIGFSAGLAIGAEGLPSIGALGIGHLKEAPRFELIETRPVGADILH 359 Query: 353 EY 354 + Sbjct: 360 RW 361 >gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3] gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3] Length = 379 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLCAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|294010277|ref|YP_003543737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium japonicum UT26S] gi|292673607|dbj|BAI95125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium japonicum UT26S] Length = 317 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/315 (41%), Positives = 172/315 (54%), Gaps = 41/315 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ S+ GL++ NP+V CLIVKDG V+GRG T GG PHAE QAL+EA + ARGA Sbjct: 1 MAAAIALSQRGRGLSTPNPNVGCLIVKDGHVVGRGWTQRGGRPHAEAQALDEALDRARGA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TAYVTLEPC H R P CA + G+RRVV+ + DPD R G+G WL Q G+ VD Sbjct: 61 TAYVTLEPCFHLSPRGPRCADRMARAGVRRVVIALRDPDPRTDGQGAAWLRQHGVAVDMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M E + ++ RQ R +TLK+ +S D I +A S ITG ++ H+ RA Sbjct: 121 LMAGEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPEARAHAHMERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ SP R++L Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLLGLEDRSPRRVLL------------------------ 216 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + D P I D+ L V LLVEGGA A +F+ + LV Sbjct: 217 SHGDAP--------GGWETIAA-PEDIAALPQ------VDHLLVEGGAQAAAAFLRADLV 261 Query: 309 DSIILYRSQIVIGEG 323 D ++LYR+ I+IG G Sbjct: 262 DRLLLYRAPILIGAG 276 >gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str. Loch Maree] gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str. Loch Maree] Length = 365 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 198/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EA E+A+G Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREASEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT Y+TLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTE 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++++V +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGI TV+ DDP LT R+ G + SP II+D + ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIDTVIKDDPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETLSKRAIYIA 244 Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T ++ +P A ++ + L KL+ L GV S+L+EGG+ + S Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQYLGSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD I+ + S+ +IG GI S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|315186245|gb|EFU20006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Spirochaeta thermophila DSM 6578] Length = 362 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 114/306 (37%), Positives = 176/306 (57%), Gaps = 8/306 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS NP V ++VKDG V+G G G PHAEV AL EAG EARGA YVTLEPC H+ Sbjct: 21 GRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSEAGGEARGAEMYVTLEPCCHW 80 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141 GR+PPC I++ G+RRVVV DP+ +V+G+GL L++ G+ V+ ++ E + + Sbjct: 81 GRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNRGF 140 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 ++R R + K+A S D I + S ITG S+ +VH LRA SD ++ GIGTVL Sbjct: 141 ISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRREVHRLRAGSDVLVTGIGTVL 200 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 ADDP T R+ + P ++LD +L + +++++ V++V D Sbjct: 201 ADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREGT---VVMVGPGVDEGWRGEME 257 Query: 262 KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ + ++ R D++ + L GV ++VE GA V +F+ + +VD ++++ + Sbjct: 258 RRGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAGVTGAFLEAGVVDELVVFVAP 317 Query: 318 IVIGEG 323 V+GEG Sbjct: 318 RVLGEG 323 >gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 381 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL +A Sbjct: 9 AALDVHYMARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +++ G+ RVV + DP+ VSGRGL L G Sbjct: 69 GELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNAG 128 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R R ++ +K+A+S D MA S ITG +++ Sbjct: 129 IGVQCGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARSA 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD+ LT R + L ++ P+R+++D ++ L Sbjct: 189 VQRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVPL 248 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL+KL+ Sbjct: 249 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 297 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 298 LANRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 342 >gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 374 Score = 209 bits (531), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 189/333 (56%), Gaps = 17/333 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL EA Sbjct: 6 SPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ L+ G Sbjct: 66 GENARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++E + + +L R + + LK+A+S D MA S ITG ++ Sbjct: 126 IQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLS 231 V RA++ A+L TVLADDP L R L QE+ P+R+ILD K+ Sbjct: 186 VQQYRAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKVR 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTS 289 D K+ T APV + E+D + + + + + + R L+ L+T L R + + Sbjct: 246 SDFKVFLTD--APVWLAGEDDFQLTGFPTSTEYLKLDRSHGESR-LQALMTELGKRQINT 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 L VE GA +A + I LVD +I+Y + ++G+ Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335 >gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] Length = 370 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 124/325 (38%), Positives = 180/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H K S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLKTPPSSHVITDGLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGTDVNQEKIASYESKNITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325 >gi|83941150|ref|ZP_00953612.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36] gi|83846970|gb|EAP84845.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36] Length = 367 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 187/356 (52%), Gaps = 11/356 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDSDTRVSGKGIAILRAAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IVD ++E E + + R E R +TLK+A S D I A S IT ++ V Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLASSFDGRIATASGESQWITAPPARRVV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R++ DA++VG GT DDP LT R G P RI++ + L+ + +TA Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTTRQ-PTRIVVSNGLDIPLNGTLARTANDI 240 Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P+I+ P L + +I C + D +L L G+T + EGG + Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDV 350 A + + LVD ++ + + + +G G+P +PL+ L + F G D+ Sbjct: 301 AATLLKENLVDQLVGFTAGLALGADGLPAIAPLQLPRLAQAPRFTLTETSRIGPDL 356 >gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. MR-4] gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. MR-4] Length = 381 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 131/339 (38%), Positives = 190/339 (56%), Gaps = 18/339 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + + L+ ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLADDP L R + L Q P+R+ILD + Sbjct: 181 RRDVQRLRLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLAPVIIV-TENDDPVL--ALAFRKKNINIIYCDCR-DLKKLLTILVGR 285 + + + ++ A+ +P+++V TE P L + + D R L LL+ L G+ Sbjct: 241 MPITAALL--AIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYL-GK 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +L+E GA +A +FI L D ++LY++ ++G G Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQG 336 >gi|262376969|ref|ZP_06070195.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145] gi|262308007|gb|EEY89144.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145] Length = 362 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 188/325 (57%), Gaps = 20/325 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ +R T NP+V C+IVKDGIVIG G G PHAEV AL +AGE+ Sbjct: 7 DQVWMRRAIELARQGQYSTKPNPNVGCVIVKDGIVIGEGFHPQAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPC+HYGR+PPCA+ ++E G+ +VVV DP+ V+G+G+Q L I V Sbjct: 67 ARGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILKDAEIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E E +L ++ LKIA S D MA S ITG ++ V Sbjct: 127 EIGICEDEAHQLNQGFLKAMATGMPYMRLKIASSLDGRTAMASGESKWITGLAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDSKIIKTA 240 RA S A++ GI TVLADD EL R L+GL++ P RIILD +L L++KI Sbjct: 187 WRAISGAVITGIDTVLADDCELNVRQLDGLEDIKTVVQPKRIILDRQGRLPLNAKI---- 242 Query: 241 LLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297 L+ P ++ FR++ ++ +++ + L +LL LV + + +LVE GA Sbjct: 243 LVQPETVMVMG-------PFRQELADLGVLHLPVQPLAELLKQLVQQHQIYDVLVEAGAT 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322 ++ +F+ +LVD +I Y + ++G+ Sbjct: 296 LSTAFLQQKLVDELISYVAPTLLGQ 320 >gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240355] Length = 361 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 177/321 (55%), Gaps = 9/321 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQSPTYIA 238 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 E ++ L +I I+ DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + L D I+LYRS ++G G Sbjct: 299 LAEDLADEIVLYRSPKILGSG 319 >gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987] gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987] Length = 370 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 180/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVYALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG S+ VH Sbjct: 123 TTGVLEAEAILLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEESRADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I V D ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325 >gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis serovar chinensis CT-43] Length = 365 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 182/323 (56%), Gaps = 8/323 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 ATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 244 TTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 ++L++ +ILY + +IG PS Sbjct: 304 NKLMNKLILYVAPKIIGGRLAPS 326 >gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC 43325] gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC 43325] Length = 377 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 190/331 (57%), Gaps = 15/331 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ DA FM AL ++ T+ NPSV C++VKDG ++G+G G PHAEV AL +A Sbjct: 5 SAQDAVFMQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMALRDA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ RVV + DP+ +V+G+GLQ L+++G Sbjct: 65 GEQAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQMLAEQG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++E + + +L R + + LK+A+S D +A S IT +S+ Sbjct: 125 IESAVGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSELSRQD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V + RA++ AIL TV+ADDP L R L + P+R+ILD ++ Sbjct: 185 VQVERAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQYKHENLRQPIRVILDSQNQVQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 ++ + +PV V++++ + + I I+ L L+ L R + +L Sbjct: 245 PTQRLFQVD--SPVWFVSKSERDLSGYPQSCEQI-ILEDKAEYLHNLMLELGKRQINTLW 301 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +E GA +A + I + LVD +I+Y + ++G+ Sbjct: 302 IEAGATLAGALIEANLVDELIIYTAPKLLGD 332 >gi|83593160|ref|YP_426912.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodospirillum rubrum ATCC 11170] gi|83576074|gb|ABC22625.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodospirillum rubrum ATCC 11170] Length = 367 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 136/323 (42%), Positives = 191/323 (59%), Gaps = 8/323 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + +G NP+V C++V G V+GRG T GG PHAE +AL+ AG ARG Sbjct: 1 MRTALGLAARGLGRVWPNPAVGCVLVDAQGRVVGRGWTQPGGRPHAEREALDRAGAAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 ATAYVTLEPCSH+G++PPCA +I+ G+ RVV + DPD RVSGRG L G++V+ Sbjct: 61 ATAYVTLEPCSHHGKTPPCADALIDAGVVRVVAALGDPDPRVSGRGFAQLRAAGVVVETG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + +L ++ R +TLK A + D I AG S ITG ++ HLLRA Sbjct: 121 LLVDEARALNLGFLLHRLRGRPLVTLKAATTLDGRIATAGGDSQWITGPQARRYGHLLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAI +G+GT LADDP L+CRL GL++ SP+R++ D L L ++++A P+ I+ Sbjct: 181 DHDAIAIGLGTALADDPLLSCRLAGLEDRSPLRVVFDSALALPLGGALVRSADRLPLWII 240 Query: 249 TENDDPVL---ALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T AL R I + D R + L+ L G+GVT LLVEGG +A +F Sbjct: 241 TTAAATAARRQALVERGAEILEVEADPRGRPTIAGALSALAGQGVTRLLVEGGGHLAAAF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGI 325 + + LVD + +R+ +IG G+ Sbjct: 301 LAADLVDRLAWFRAARLIGGDGL 323 >gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter marianensis DSM 12885] gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter marianensis DSM 12885] Length = 427 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 143/357 (40%), Positives = 195/357 (54%), Gaps = 15/357 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM ALR + G T NP V +IV+DG V+G G G PHAE++AL AGE Sbjct: 35 DRAFMRRALRLASRARGRTHPNPMVGAVIVRDGEVVGEGFHRRAGEPHAEIEALRMAGER 94 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC HYGR+PPC II G+RRVVV + DPD RV+GRG+ L+ GI V Sbjct: 95 ARGATLYVTLEPCCHYGRTPPCTGAIISAGLRRVVVAMVDPDPRVAGRGIAALAAAGIEV 154 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E E L+ AY+ + R +T K A++ D I A S +TG ++ H Sbjct: 155 AVGLEEEAARRLNEAYIVHRRLGRPMVTAKYAMTLDGRIATARGDSRWVTGIRARRWAHR 214 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAILVG+GTVLADDP LT RL+ P+RI+LD H + +++++ A +P Sbjct: 215 LRDRVDAILVGVGTVLADDPLLTVRLH-PGGRDPLRIVLDSHARTPPTARVVQVARQSPA 273 Query: 246 ---IIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGAA 297 + VT + ++ D R L LL +L GV LLVEGGA+ Sbjct: 274 PTWVAVTPGAPAARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGAS 333 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDY---FGSD 349 V +F +RLVD ++ + + G P P+ +E+ + +RR + GSD Sbjct: 334 VHGAFFGARLVDRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSD 390 >gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC 13091] gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC 13091] Length = 369 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 179/327 (54%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I V+G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSG 327 >gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] Length = 365 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 121/323 (37%), Positives = 182/323 (56%), Gaps = 8/323 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 ATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 244 TTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 ++L+D +ILY + +IG PS Sbjct: 304 NKLMDKLILYVAPKIIGGRLAPS 326 >gi|240079985|ref|ZP_04724528.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA19] gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19] gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19] Length = 369 Score = 208 bits (530), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L DS+++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPDSRLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 +I E ++ L + ++ I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTLIATLERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327 >gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5] gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 129/338 (38%), Positives = 187/338 (55%), Gaps = 10/338 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG + Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 125 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + + L+ A++ R +TLK A + D I S I+ S+ VH Sbjct: 126 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL G++ P+RII+D ++ LDS ++ L Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRL-GVKGLHPVRIIVDSSLRIPLDSHVVLDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D + + +I C DLK L L +G+ S+L+EGG + S Sbjct: 245 ILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALLQLGQKGIASILLEGGGTLNGSM 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337 + +LVD +I + + +I GG +P + GY + N Sbjct: 305 LEQKLVDRLIQFIAPKII--GGYDAPGNYMFSGYEQMN 340 >gi|59800550|ref|YP_207262.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA 1090] gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62] gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA 1090] gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62] Length = 369 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327 >gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97] gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97] Length = 370 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + L+ Y ++ KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325 >gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 358 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTGARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N +A + + +L ++L +L +GV+SLLVEGG V SFI + Sbjct: 238 TSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 347 >gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC BAA-1200] gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC BAA-1200] Length = 374 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/324 (40%), Positives = 189/324 (58%), Gaps = 8/324 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D R M AL +R TS NP V C+I + G ++G+G G PHAEV AL +A Sbjct: 9 SDTDRRHMRTALALAREGRFTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALRQA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCAQ +I G+ RVV V DP+ +V+G+GL L+ G Sbjct: 69 GELARGATAYVTLEPCAHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAAAG 128 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + E+E + H +L+R R + LK A S D ++ S IT ++ Sbjct: 129 IAAECGLFEAEARELNHGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATRAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH+LRA+S A+L GIGTVLADDP LT R + +P R++LD +L +K++ Sbjct: 189 VHILRAESCAVLTGIGTVLADDPLLTVRGFPVVR-APARVVLDSRLRLPQTAKLLADP-S 246 Query: 243 APVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 APV+++T DP AF R ++++ D L L +L G+ +L E GA Sbjct: 247 APVLLLTGEADPAKHAAFARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETGAT 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 ++ + + + LVD I+LY++ ++G Sbjct: 307 LSGALLRADLVDEIVLYQAAKILG 330 >gi|257468833|ref|ZP_05632927.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium ulcerans ATCC 49185] gi|317063083|ref|ZP_07927568.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium ulcerans ATCC 49185] gi|313688759|gb|EFS25594.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium ulcerans ATCC 49185] Length = 358 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 203/359 (56%), Gaps = 15/359 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE+ Sbjct: 2 DKKYMERALELAALGEGNVNPNPMVGAVVVKDGKILGEGYHRKYGGPHAEVFALEEAGEK 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ VSGRG++ ++ GI + Sbjct: 62 AKGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIEV 121 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +ME E ++ K ++ LK ++ D I S IT +++ +V Sbjct: 122 ITGIMEKEALELNRVFMKYISTKTPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQR 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVLADDP LT R+ NG +P RI++DP + LDSK + Sbjct: 182 LRNKYMGIMVGINTVLADDPSLTARIENG---RNPYRIVIDPFLDIPLDSKFVNFEDGKS 238 Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301 +++ + N+ ++ + KN+N+I+ + + K +L + G+ ++L+EGG+ + Sbjct: 239 ILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGETGIDAVLLEGGSFLISR 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEY 354 + +D ++ + ++G+G P +G+ +N V+ + +G++V +E+ Sbjct: 299 AFAEKAIDGGEIFIAPKILGDGE-AVPFIKGFTCENISDGFQLENVKINNYGNNVSMEF 356 >gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis DSM 17678] gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis DSM 17678] Length = 372 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 207/380 (54%), Gaps = 30/380 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 + ++MS A+ ++ G T+ NP V +IVKDG V+G+G + GC HAE +AL++ Sbjct: 1 MEEKYMSMAIELAKKACGYTNPNPMVGAVIVKDGQVLGKGYHTWCGCLHAEREALKDCQS 60 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G GAT YVTLEPC HYG++PPC + IIE GI +VVV DP+ +V+G+G+Q L Sbjct: 61 RGVTVTGATMYVTLEPCCHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDH 120 Query: 123 GI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI +V +ME E ++F+H Y+ K+ + +K A++ D I S ITG Sbjct: 121 GINVVTGVMEKECDDLNEVFMH-YIKN---KKPFVVMKYAMTADGKIATRTGKSQWITGP 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKI 236 ++ QVH R + I+VGIGTVLADDP L CRL +GL SP RII D ++ +DS I Sbjct: 177 EARGQVHKDRHRYAGIMVGIGTVLADDPTLNCRLEDGL---SPTRIICDTSLRIPMDSNI 233 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 ++TA II T + D ++ + I+ D + DL L+ + G+ S+L+ Sbjct: 234 VRTAKTYDTIIATRSKDNEKIRKLKEASCQILVQDGQADRIDLVDLMDKVGSMGLDSVLL 293 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY------LEKNFMCVRRDYF 346 EGG + S + + +V+ + +Y + G SP+ GY K + F Sbjct: 294 EGGGQLNWSALEAGIVNKVQVYIGNKIFGGNDAKSPV-GGYGVDLPDQAKRLKLTGLEKF 352 Query: 347 GSDVCLEYIGKN---LCLQE 363 G D+ +EY +N C QE Sbjct: 353 GPDLLIEYRVENEVVECSQE 372 >gi|24374975|ref|NP_719018.1| riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1] gi|24349701|gb|AAN56462.1|AE015783_5 riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1] Length = 381 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 191/339 (56%), Gaps = 18/339 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IV D ++G G G PHAEV AL Sbjct: 1 MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + + L+ ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 + V LR +S A++ GI TVLADDP L R + L Q P+R++LD + Sbjct: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240 Query: 230 LSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR 285 + + + + A+ +P+++V+ + D ++ L + + + R L LL+ L G+ Sbjct: 241 MPITAALF--AIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYL-GK 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +L+E GA +A +FI S L D ++LY++ ++G G Sbjct: 298 SCNQVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQG 336 >gi|126727883|ref|ZP_01743711.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2150] gi|126702824|gb|EBA01929.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2150] Length = 364 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 181/326 (55%), Gaps = 9/326 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M A+ +G T NP+V C+IVKDG V+ R TA GG PHAE QAL+ G Sbjct: 4 ATDERWMRLAISLGAQRLGQTWPNPAVGCVIVKDGRVLARAATAPGGRPHAETQALD--G 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+G+T YV+LEPC+H G++PPCAQ +I+ + RVV + DPD RV G+G LS GI Sbjct: 62 INAKGSTVYVSLEPCAHTGKTPPCAQALIDARVARVVYGMRDPDCRVDGKGTSMLSAAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E + ++T + R +TLK+A S D I A S ITG ++ V Sbjct: 122 AVTGPVLEKQALAANQGFITAITKGRPALTLKLATSFDGRIATASGQSQWITGPNARRAV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H++RA DAI+VG GT ADDP LT R+ G+ H P+R+I + +D ++ A Sbjct: 182 HMMRANHDAIMVGAGTARADDPTLTQRVGGI-AHQPIRVICTSDLNIPMDGALVGAIKHA 240 Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P+ ++ D A A+ +K +I D+ + L +G+T + EGG + Sbjct: 241 PLWLIHGQDAKASARDAWLQKGAKLIQVPSSPNGLDMTVAMQKLCEKGITRVFCEGGGQL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG 324 A + ++LVD ++ + + + +G G Sbjct: 301 AAGLLKAKLVDRLVGFTAGMALGGDG 326 >gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium sp.] Length = 380 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 198/369 (53%), Gaps = 30/369 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + G TS NP V ++VKDG V G+G G HAEV A+++A ++ Sbjct: 17 DLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKDGKVAGKGYHEAYGKAHAEVNAIDDAKKD 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + GAT YVTLEPC+H+G++PPC + IIE GI+RVV + DP+ V G G ++L GI V Sbjct: 77 SFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGIDV 136 Query: 127 -----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + E + +IF+ T KR + +K A + D I S +TG S+ Sbjct: 137 IFGVCGKEAEKQNEIFIKYTKT----KRPFVMVKCASTLDGNIATKTGDSKWVTGEESRQ 192 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR SDAI+VGI TV D+PELT R++G+ SP+R+ILD +S D+ ++ Sbjct: 193 FVHRLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSPVRVILDSRLSISEDALVLNKNS 252 Query: 242 LAPVIIVTENDDPVLALAFRK-----KNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 + I+V N P A+ +K K I II +L L+ L G+TSLL+ Sbjct: 253 DSDTIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAENNLINLDILMDTLGLMGITSLLI 312 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRR---D 344 EGG+ V S + ++VD I + + ++G G+ P P L ++ + V+ Sbjct: 313 EGGSRVIASAFSQKIVDKIFFFYAPKILGGDGVSICRGPGPA----LMRDCLPVKEVGIQ 368 Query: 345 YFGSDVCLE 353 FG D+ +E Sbjct: 369 KFGDDILIE 377 >gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893] gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893] Length = 371 Score = 207 bits (528), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 193/370 (52%), Gaps = 31/370 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D FM+ A++ + T NP V C+I + V+G G G HAE +AL + Sbjct: 2 IDAQDTAFMARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +ARGATAYVTLEPCSH+GR+PPCA+ +IE GI V DP+ VSGRGL L + Sbjct: 62 AGPDARGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREA 121 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + +E + L+ ++ R R ++ LK+A S D MA S ITG S+ Sbjct: 122 GIRVTEGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V LRA SDA+L G+GTVLAD+P LT R L + P+R+I D + Sbjct: 182 DVQRLRAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPG 241 Query: 234 SKIIKTALL-----APVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTIL 282 + I++ + +P + D + +A++ I D+++LL L Sbjct: 242 ATILQGGNVQVYCASPTLATAPAQDLAALGVGLTGVAWKDNGI--------DVRELLDSL 293 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFM 339 G+ LLVE G +A +FI+ RLVD + LY++ + +G G P+ PLE + + Sbjct: 294 GELGINELLVEAGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWK 353 Query: 340 CVRRDYFGSD 349 + R G D Sbjct: 354 VLDRRQLGED 363 >gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187] gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1] gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187] gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1] Length = 370 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + L+ Y ++ KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGKNAPT 325 >gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514] gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561] gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513] gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514] gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561] gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513] Length = 360 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 186/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E G Sbjct: 4 YMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENVEG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 MME E + ++ K + LK A+S D I S IT S+ H +R Sbjct: 124 MMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + +P+RII+D ++ LDS +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S + +VD ++ + S +IG +P+E Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26] gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26] Length = 379 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 131 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + L+ Y ++ KR +T+K A+S D S IT ++ VH Sbjct: 132 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKYFNEIVTYISPKLIGGKNAPT 334 >gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis H44/76] gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis H44/76] Length = 361 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 178/321 (55%), Gaps = 9/321 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238 Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 E ++ L ++ I+ D + DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + L D I+LYRS ++G G Sbjct: 299 LAENLADEIVLYRSPKILGSG 319 >gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans DSM 574] gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans DSM 574] Length = 375 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/365 (34%), Positives = 194/365 (53%), Gaps = 18/365 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G TS NP V ++VKDG V+G+G A G HAEV AL +AGE+ Sbjct: 4 DKHFMQMALELARKARGRTSPNPMVGAVVVKDGQVVGQGWHAKAGTAHAEVVALADAGEQ 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC H+GR+ PC + +++ G++RVV + DP+ V+G+GL L G+ V Sbjct: 64 ARGATVYVTLEPCCHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAGVEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ESE + ++ R + LK A S D I A S ITG ++ + H Sbjct: 124 QVGVLESEARQLNEIFIKYITTGRPFVVLKAATSLDGKIATATGESKWITGAAARTEGHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVG+ T+LADDP LT RL + P+R+++D + ++++ A Sbjct: 184 LRDIYDAILVGVNTILADDPALTTRLPEGRGKDPIRVVVDSTARTPTSARVLIQQSAAHT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGA 296 II T P A R+ ++ + DL KL+ +L R +TS+L+EGG Sbjct: 244 IIATTEAAP----AERRASLMAAGAEVLVVPGQGPRVDLVKLMELLGQRQITSVLIEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + S + + +VD + + + +IG P P+ M + +V L+ +G Sbjct: 300 KINGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGA----GIMSLNDATKLYNVSLQRVG 355 Query: 357 KNLCL 361 +++ + Sbjct: 356 EDILI 360 >gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541] gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541] Length = 370 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/358 (37%), Positives = 191/358 (53%), Gaps = 7/358 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M ALR + + G TS NP V LIV+DG+V+ G G PHAE+ AL AG Sbjct: 6 ALDESYMREALRLAEFARGRTSPNPLVGALIVRDGVVVANGWHRAAGEPHAEIHALRMAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGA YVTLEPC+H+GR+ PCA+ +I G+ RVVV + DP+ V+GRG+ L GI Sbjct: 66 DLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E + +L KR +TLK A++ D I S ITG ++ +V Sbjct: 126 EVVTGVLEDEARRQNETFLKWITTKRPFVTLKTAMTLDGKIASRTGASAWITGESARMRV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R DAIL+GIGT+LADDP LT RL H P+RI+LD + + +K++ Sbjct: 186 HEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHPLRIVLDSEARTPISAKLVTDGAAP 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VI V+E DP R ++ D+ LL L R TSL VEGGA S Sbjct: 246 TVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGCLLDWLGERECTSLFVEGGAEANWS 305 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 F+ D + + + +++G P+P+ + +R DV +E IG +L Sbjct: 306 FLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSPQTALRL----GDVTVEQIGMDL 359 >gi|294788324|ref|ZP_06753567.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC 29453] gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC 29453] Length = 363 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/324 (37%), Positives = 188/324 (58%), Gaps = 12/324 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 6 SDLDHAHMHRALELAWQGRFSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPC+HYGR+PPCA+ + E G+ RVV + DP+ V+G+GL L+ G Sbjct: 66 GSLAQGATAYVTLEPCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 ++V+ ++E + + +L+R KR I+LK+A S D ++ S ITG ++++ Sbjct: 126 VLVECGLLEHKARELNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARSD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LRAQS AIL GIGT+LAD+P+L R N L++ P+R+ILD +F+L S++++ Sbjct: 186 VQQLRAQSCAILTGIGTILADNPQLNVRQFNTLRQ--PIRVILDSYFRLPEKSQVVQDD- 242 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + T D P + +N+ + + +L + IL GV +L+E G Sbjct: 243 -GETWLFTLTDTPSWVAKY--ENLRVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQT 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + LVD I+ ++S ++G Sbjct: 300 LATAFLQADLVDEIVYFQSPKILG 323 >gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676] gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676] Length = 358 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGA Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N +A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 347 >gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae NCCP11945] gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18] gi|240112192|ref|ZP_04726682.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae NCCP11945] Length = 361 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 179/321 (55%), Gaps = 9/321 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238 Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 E D+ L +I I+ D + DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + L D I+LYRS ++G G Sbjct: 299 LAENLADEIVLYRSPKILGGG 319 >gi|149186473|ref|ZP_01864786.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21] gi|148830062|gb|EDL48500.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21] Length = 329 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/324 (41%), Positives = 171/324 (52%), Gaps = 41/324 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P +S DAR++ AA R + L NP+V CL+V G VI RG T GG PHAE AL Sbjct: 2 IPTAS-DARWLDAAARLASRGRPLARPNPAVGCLLVNKGRVIARGWTREGGRPHAEAVAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E+AG ARGATAYVTLEPC+H R P C+ +++ G+ RVVV DPD R SG GL+ L Sbjct: 61 EQAGSAARGATAYVTLEPCAHRSTRGPACSDLLVKAGVARVVVGALDPDPRTSGEGLERL 120 Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V + K L YL R R H+TLK+A+S D I MA S ITG + Sbjct: 121 RRSGIEVSQDYTEAVKASLAGYLIRAHRGRPHVTLKLALSLDGCIAMADGSSQWITGEEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH RA SDAILVG GT D P L RL GL++ SP R++L S+ + Sbjct: 181 RAHVHSRRAMSDAILVGGGTWRQDKPHLDVRLPGLEDRSPARVLL---------SRGV-- 229 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P V +DP I GV L VEGGA A Sbjct: 230 ----PPDGVKVINDPA------------------------QIAQLEGVHYLYVEGGAGAA 261 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 SF+ + LVD + +YR+ I+IG G Sbjct: 262 ASFVRADLVDRLEIYRAPILIGNG 285 >gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA6140] gi|240117225|ref|ZP_04731287.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID1] gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID24-1] gi|240122774|ref|ZP_04735730.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID332] gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291] gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1] gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332] gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291] gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1] gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332] Length = 369 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327 >gi|239998220|ref|ZP_04718144.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae 35/02] gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02] gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02] Length = 369 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327 >gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae TCDC-NG08107] Length = 361 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/321 (38%), Positives = 179/321 (55%), Gaps = 9/321 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238 Query: 248 VTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 E D+ L +I I+ D + DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + L D I+LYRS ++G G Sbjct: 299 LAENLADEIVLYRSPKILGGG 319 >gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 360 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/330 (37%), Positives = 185/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E G Sbjct: 4 YMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENVEG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 MME E + ++ K + LK A+S D I S IT S+ H +R Sbjct: 124 MMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + +P+RII+D ++ LDS +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLDSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S +VD ++ + S +IG +P+E Sbjct: 298 SAFKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272] gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272] Length = 370 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 183 YRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPT 325 >gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108] gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102] gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108] gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102] Length = 370 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325 >gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 358 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 191/350 (54%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI+RVVV DP+ VSGRG+Q L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG+ TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 181 NAAILVGVNTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N A + + +L ++L +L +G++SLL+EGG V SFI + Sbjct: 238 TNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGISSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 KLMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 347 >gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827] gi|188019376|gb|EDU57416.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827] Length = 371 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 181/329 (55%), Gaps = 15/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL ++ TS NP+V C+IV+DG ++G G G PHAEV AL AGE+ Sbjct: 5 DRIYMARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGEK 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH+GR+PPCA+ +I G+RRVV + DP+ +V+GRGL LSQ GI Sbjct: 65 AKGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQAGIET 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + +L R ++ LK+A S D + S IT ++ V + Sbjct: 125 ASGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQDVQV 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234 LRAQ+ AIL TVLAD+P LT R N L P+RI+LD H +++ + Sbjct: 185 LRAQASAILSTSSTVLADNPSLTVRWNELPAEIHAVYPQSTLRQPIRIVLDNHNRVTAEY 244 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 K+ T L +V +P + + + I D DL L+ L R V S+ VE Sbjct: 245 KV--TQLAGECWLVRSQPEPDAVWQGQVEQLAIPSDDNGIDLVILMMQLAKRNVNSIWVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322 G +A S + LVD +I+Y + ++G+ Sbjct: 303 AGPILAGSLLKLGLVDELIVYIAPKLLGD 331 >gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3] gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3] Length = 379 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/324 (37%), Positives = 181/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VK+G ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKEGNIVGIGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGTGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 ATGVLETEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ +NI I + ++K LL L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLLFFLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 ++ ++ I+ Y S +IG P+ Sbjct: 311 QTKHLNEIVTYISPKLIGGKDAPT 334 >gi|83955709|ref|ZP_00964289.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1] gi|83840003|gb|EAP79179.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1] Length = 367 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 188/356 (52%), Gaps = 11/356 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDRDPRVSGKGIAILRAAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IVD ++E E + + R E R +TLK+A S D I A S IT ++ V Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLANSFDGRIATASGESQWITAPPARRVV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R++ DA++VG GT DDP LT R G P RI++ + L+ + +TA Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTTRQ-PTRIVVSNGLDIPLNGALARTANDI 240 Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P+I+ P L + +I C + D +L L G+T + EGG + Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDV 350 A + + + LVD ++ + + + +G G+P +PL+ L + F G D+ Sbjct: 301 AATLLKADLVDQLVGFTAGLALGADGLPAIAPLQLQRLAQAPRFTLTETSRIGPDL 356 >gi|323705867|ref|ZP_08117439.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium xylanolyticum LX-11] gi|323534863|gb|EGB24642.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium xylanolyticum LX-11] Length = 360 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 111/327 (33%), Positives = 187/327 (57%), Gaps = 7/327 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL+ ++ VG T+ NP V +I+KDG +IG G Y G PHAE+ AL+ A E+ Sbjct: 3 KYMKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKEDVN 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPC H+G++PPC +I+ GI+ V + ++DP+ V+GRG++ L + G+ + Sbjct: 63 GATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVYT 122 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +++ E + ++ + ++ LK A++ D I S IT S+ VH +R Sbjct: 123 GLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKVR 182 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 AI+VGI TV+ D+P LT RL G + +P+R+I+D H ++ LD+ +I +I Sbjct: 183 GSVMAIMVGINTVIKDNPHLTVRLQGYK--NPLRVIVDSHGRIPLDANVIIDKSAKTLIA 240 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T+ A + ++++ + +D L KL+ L RG+ S+L+EGG + +S + Sbjct: 241 TTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSAL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE 330 +VD ++ Y + +IG +P+E Sbjct: 301 KEGIVDKVMFYIAPKIIGGSNSLTPVE 327 >gi|293390135|ref|ZP_06634469.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950669|gb|EFE00788.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 374 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 187/333 (56%), Gaps = 17/333 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL EA Sbjct: 6 SPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC H+GR+PPCA+ + E G+ +V+ + DP+ +V+G+GLQ L+ G Sbjct: 66 GENARGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++E + + +L R + + LK+A+S D MA S ITG ++ Sbjct: 126 IQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLS 231 V RA++ AIL TVLADDP L R L QE+ P+R+ILD K+ Sbjct: 186 VQQYRAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVR 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTS 289 D K+ T APV + E+D + + + + + + R L+ L+T L R + + Sbjct: 246 SDFKVFLTD--APVWLAGEDDFQLTGFPASTEYLKLDRSHGESR-LQALMTELGKRQINT 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 L VE GA +A + I LVD +I+Y + ++G+ Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGD 335 >gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273] gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273] Length = 379 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHMHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334 >gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42] gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42] Length = 379 Score = 207 bits (526), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334 >gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis str. Al Hakam] gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1] gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis str. Al Hakam] gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1] Length = 379 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 310 LQTKYFNEIITYISPKLIGGSKAPT 334 >gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L] gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L] Length = 370 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/325 (37%), Positives = 180/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 301 LQTKYFNEIITYISPKLIGGSKAPT 325 >gi|325577912|ref|ZP_08148145.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae ATCC 33392] gi|325160342|gb|EGC72469.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae ATCC 33392] Length = 376 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/331 (37%), Positives = 180/331 (54%), Gaps = 16/331 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL +A Sbjct: 6 SPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKAGQPHAERMALADA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+ G Sbjct: 66 GEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLADAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + ++ LK+A+S D MA S ITG ++ Sbjct: 126 IPTAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V +RA+S A+L TVLADDP L R N + P+R+ILD ++ Sbjct: 186 VQKMRAKSTALLSTSATVLADDPSLNVRWNQFPDDLKTEYAEETVRQPIRVILDSKNRVQ 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 ++ T +PV +V P F I+ + D L+T L R V S+ Sbjct: 246 SSHQLFHTH--SPVWLV--GSIPRDMSVFPDFCEQILLSENYDFDMLMTELGKRQVNSVW 301 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE GA +A S I VD +I+Y S ++G+ Sbjct: 302 VEAGANLAGSLIEQHAVDELIIYVSPKLLGD 332 >gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus YK9] gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus YK9] Length = 373 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/361 (37%), Positives = 196/361 (54%), Gaps = 20/361 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M AL+ ++ G TS NP V C+IVK+G +IG G G HAEV AL AG+E Sbjct: 7 DAFYMRLALQMAQGATGQTSINPVVGCVIVKEGRIIGMGAHLKRGEGHAEVNALRMAGDE 66 Query: 67 ARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GATAYVTLEPCSHY ++PPC +IE I RVVV DP+ +V+G G++ L GI Sbjct: 67 AEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKLRAAGIA 126 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++ E Y + + +TLK A + D I S ITG S+ VH Sbjct: 127 VSVGLLAEESHAMNERYNKYILSRLPFVTLKTASTLDGRIAAKTGDSRWITGPASREAVH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R Q D I+VGIGT+LADDP+LT RL H P RII+D ++ LD++++ + Sbjct: 187 TMRHQHDGIMVGIGTLLADDPQLTTRLEVPALH-PARIIVDSALRIPLDARVVTDGMART 245 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVA 299 +++ T +P + + + I+ DC D L + + +L + S+L+EGG + Sbjct: 246 IVLTTTAANPEKRSSLQAAGVEIV--DCGDGPHVNLTEAMRLLGDMEIGSILLEGGGQLN 303 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEK-----NFMCVRRDYFGSDVC 351 + + + LVD I L+ + +IG GG SP EG+ EK R + +G D+ Sbjct: 304 GAMLAAGLVDKISLFFAPKLIG-GGEASPAAFVFEGF-EKMADAITLESTRYEQYGDDIA 361 Query: 352 L 352 + Sbjct: 362 V 362 >gi|77919046|ref|YP_356861.1| riboflavin biosynthesis protein RibD [Pelobacter carbinolicus DSM 2380] gi|77545129|gb|ABA88691.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pelobacter carbinolicus DSM 2380] Length = 371 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 190/355 (53%), Gaps = 11/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ +R G T NP+V LIVKDG ++GRG G PHAE+ AL EAG+ ARG Sbjct: 8 FMRQAIDLARRGEGRTRPNPAVGALIVKDGEIVGRGFHPKAGQPHAEIYALREAGDRARG 67 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 A YVTLEPCSH+GR+ PCA IIE G+ RV V DP+ +V+G G++ L GI V Sbjct: 68 ADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVHCG 127 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E+ + + + + + + LK A++ D A S +T S+++VH LR Sbjct: 128 VLENLCRRIIAPFAKHILTAKPFVVLKSAMTLDGKTATASGHSQWVTSAASRHEVHKLRD 187 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPVII 247 + D I+VGIGTVL DDP+LT RL P RI+LD ++ D+ I+ + A +I Sbjct: 188 RMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVLDSSLRIPEDAAILNLQSSAATLIA 247 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T A R ++ DL L+T L RG+ S+L+EGGA + +F Sbjct: 248 TTARASKAKIEAIRAAGAEVLVLPESGGRVDLHALMTALGARGLQSILLEGGAELNGAFW 307 Query: 304 NSRLVDSIILY-RSQIVIGEGGIPSPLEEGYLEKNFMCVRRD----YFGSDVCLE 353 + LVD ++++ +IV G+GG G L V D +FG D +E Sbjct: 308 RAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMTEATVLEDVRVTHFGDDTLIE 362 >gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 358 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 181/322 (56%), Gaps = 8/322 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGA Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPS 327 +L++ +ILY + +IG PS Sbjct: 298 KLMNKLILYVAPKIIGGRLAPS 319 >gi|190571227|ref|YP_001975585.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357499|emb|CAQ54935.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 405 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 190/366 (51%), Gaps = 48/366 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A + Sbjct: 3 DDYFMSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AT YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI V Sbjct: 63 THSATMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +M+ E ++ + T + R I KIA + D I S IT ++N VH Sbjct: 123 EQGIMQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+ DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA Sbjct: 183 LRAKYDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYN 242 Query: 246 IIVTENDDPVLALAF-------RKK----------------------------------- 263 +++ L+++F RKK Sbjct: 243 HDLSKEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYL 302 Query: 264 --NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 N N C LK + + LV G+T LLVEGG + + L+D +I+ RS ++ Sbjct: 303 VVNSNNAGKVC--LKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKIL 360 Query: 321 GEGGIP 326 G P Sbjct: 361 GNDATP 366 >gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 372 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 186/332 (56%), Gaps = 10/332 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE Sbjct: 10 YMSLAMELAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAKKNGES 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L GI + Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+++AI+VGIGTVL DDP L R+ G +P +I++D ++ LD+K++ ++ + Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248 Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I TE D ++ N++I+ C + DL L + L + S+L+EGG + + Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 S + LVD +I + +IG G+ EG Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEG 340 >gi|240124968|ref|ZP_04737854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae SK-92-679] gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-92-679] gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-92-679] Length = 369 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 181/327 (55%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ D + DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGIG 327 >gi|71083736|ref|YP_266456.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1062] gi|71062849|gb|AAZ21852.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1062] Length = 351 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 7/310 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++ + E G+ Sbjct: 1 MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L L K I+V + + Sbjct: 61 KMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + F Y + + ++T KIA+S++N+I + I+ + H LR + Sbjct: 121 LKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDRFTHFLRYK 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +D++++ T+ DDP+L CRL GL + SP RIILD + ++ +S I KTA II Sbjct: 179 NDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFY 238 Query: 250 ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 N + L +KK I +I + D+K +L L G +LLVEGG ++ I Sbjct: 239 YNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKK 298 Query: 306 RLVDSIILYR 315 +L + LY+ Sbjct: 299 KLFNEFYLYK 308 >gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201] gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201] Length = 379 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGTDVNQEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334 >gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147] gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147] Length = 359 Score = 206 bits (524), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/356 (35%), Positives = 191/356 (53%), Gaps = 14/356 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D + M AL + TS NP V C+I ++G+G G PHAEV AL Sbjct: 3 PFTHQDTQHMQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALA 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Q Sbjct: 63 QAGALARGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQ 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G + E+E + +L+R +R + LKIA S D +A S ITG ++ Sbjct: 123 AGTQTASGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V + RA+S A+L GIGT+LAD+P+L R+ +++ P+RI+LD + S+II+ Sbjct: 183 ADVQIQRAESCAVLTGIGTILADNPQLNVRIPTIRQ--PLRIVLDRQLRTPARSRIIQDG 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVA 299 +I T++ A N++I DL LL L + L+VE G+ +A Sbjct: 241 --GETLICTQSPANPFA---DYPNVHIYRQPENDLSSLLAHLAREHQIGELMVEAGSTLA 295 Query: 300 HSFINSRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEK--NFMCVRRDYFGSDV 350 +FI + L D I+ Y++ ++G+ G P E L + + V + G D+ Sbjct: 296 TAFIQADLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDI 351 >gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240013] Length = 370 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 122/324 (37%), Positives = 177/324 (54%), Gaps = 9/324 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVI 320 + +F+ L D I+LYRS ++ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKIL 324 >gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293] gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293] Length = 373 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 119/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 66 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S IT ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDGLAPT 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 244 WIIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 304 LQTKYFNEIVTYISPKLIGGKNAPT 328 >gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. ANA-3] gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. ANA-3] Length = 381 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 130/339 (38%), Positives = 189/339 (55%), Gaps = 18/339 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + + L+ ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLAD P L R + L Q P+R+ILD + Sbjct: 181 RRDVQRLRLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLAPVIIV-TENDDPVL--ALAFRKKNINIIYCDCR-DLKKLLTILVGR 285 + + + ++ A+ +P+++V TE P L + + D R L LL+ L G+ Sbjct: 241 MPITAALL--AIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYL-GK 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +L+E GA +A +FI L D ++LY++ ++G G Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQG 336 >gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens SBW25] gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Pseudomonas fluorescens SBW25] Length = 369 Score = 206 bits (523), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 182/338 (53%), Gaps = 26/338 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL AG+ Sbjct: 2 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI Sbjct: 62 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGID 121 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++ESE + +L R + + +K+A+S D MA S ITG ++ V Sbjct: 122 VRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHS--------PMRIILDPHFKLSLDS 234 LRA++ +L G TVLAD LT R GL + + P+R+++D ++ L++ Sbjct: 182 RLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNA 241 Query: 235 KIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVT 288 K P +++T EN P R ++ DL+ L L RGV Sbjct: 242 PFFKA---GPALVITCVTAENQFP------RGPECLVVPGVEGQVDLRSALVALAARGVN 292 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G ++A +F LVD +++ + +G P Sbjct: 293 DVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARP 330 >gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII] gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII] gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866] Length = 372 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 185/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAANLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TVL DDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ ++P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333 >gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis 315-B] gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis 315-B] Length = 372 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 186/332 (56%), Gaps = 10/332 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE Sbjct: 10 YMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAQKNGES 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L GI + Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+++AI+VGIGTVL DDP L R+ G +P +I++D ++ LD+K++ ++ + Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248 Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I TE D ++ N++I+ C + DL L + L + S+L+EGG + + Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 S + LVD +I + +IG G+ EG Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGLSPVAGEG 340 >gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 379 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 310 LQTKYFNEIVTYISPKLIGGSKAPT 334 >gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus E33L] gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus E33L] Length = 367 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 127/351 (36%), Positives = 191/351 (54%), Gaps = 18/351 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A G Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQACG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR IT+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + I +L ++L +L G+GV+SLL+EGG V SFI Sbjct: 244 TTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLDVLGGKGVSSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 ++L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 304 NKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDY 354 >gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 379 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 310 LQAKYFNEIITYISPKLIGGSKAPT 334 >gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 370 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 181/325 (55%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325 >gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127] gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127] Length = 372 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 186/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TVLADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ ++P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333 >gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames] gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames Ancestor'] gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Sterne] gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0488] gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0442] gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0193] gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0465] gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0389] gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0174] gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis Tsiankovskii-I] gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W] gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820] gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC 684] gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0248] gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CNEVA-9066] gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A1055] gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Western North America USA6153] gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Kruger B] gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Vollum] gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Australia 94] gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames] gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Sterne] gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0488] gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0193] gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0442] gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0389] gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0465] gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0174] gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis Tsiankovskii-I] gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W] gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820] gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC 684] gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0248] Length = 370 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325 >gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 379 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 118/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 132 TTGILEAEALLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] Length = 387 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 191/360 (53%), Gaps = 13/360 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + +G TS NP+V ++VK G +I RG G HAEV ALE AG ARG Sbjct: 31 FMRIALEEAAKGLGRTSPNPAVGAVLVKGGRIIARGYHKKAGTAHAEVVALEAAGPRARG 90 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 A Y TLEPC HYGR+ PC+Q II+ G+RRV+ DP+ +V+G+G+ L + G+ ++ Sbjct: 91 ADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLKKAGVEVLTG 150 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ + + ++TLK AV+ D + A S +TG +++ VH LR Sbjct: 151 VLQKDADQLNQPFFKVMTTGLPYVTLKAAVTLDGKLATATGDSRWVTGEAARHWVHQLRD 210 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + D ILVG TV D+P+LT RL G P+R+++D H +L + A VI+ Sbjct: 211 KVDVILVGANTVRRDNPQLTTRLPGGGGKDPVRVVVDSHLRLKSTHTVFTQRSPARVILA 270 Query: 249 T-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFI 303 T E+ A F + + + R + L L+GR G +LVEGGA + SF+ Sbjct: 271 TLEDPQGAKARRFTRLGVEVWQMPSRQGQVALKALLGRVAQEGFNHVLVEGGAEIYGSFL 330 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 RL DS+ L+ + +IG G+ + G L N ++ D+ + +G++L LQ Sbjct: 331 RERLADSLALFLAPKLIGSQGLSWSGDLGVKLMANAFSLK------DLTFQQLGEDLLLQ 384 >gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus anthracis str. A2012] Length = 370 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTHLRTPPSSHVITDSLAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF Sbjct: 241 WIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + I+ Y S +IG P+ Sbjct: 301 LQTKYFNEIVTYISPKLIGGSKAPT 325 >gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis KIM 10] gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis biovar Microtus str. 91001] gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis IP 32953] gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Antiqua] gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Nepal516] gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Pestoides F] gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CA88-4125] gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Angola] gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. F1991016] gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. IP275] gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. E1979001] gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1] gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis YPIII] gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis PB1/+] gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CO92] gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Pestoides A] gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. India 195] gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Nepal516] gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27] gi|294504911|ref|YP_003568973.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis Z176003] gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis KIM 10] gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis biovar Microtus str. 91001] gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Yersinia pseudotuberculosis IP 32953] gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Yersinia pestis Nepal516] gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Antiqua] gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CO92] gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Pestoides F] gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CA88-4125] gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola] gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. IP275] gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. B42003004] gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis YPIII] gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis PB1/+] gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Nepal516] gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. India 195] gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Pestoides A] gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis D106004] gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis D182038] gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27] gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis Z176003] Length = 369 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 178/331 (53%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L + P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V +D P NI + Y + DL L+ L R + S+ Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas mendocina ymp] gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas mendocina ymp] Length = 371 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 183/341 (53%), Gaps = 23/341 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 1 MSERDHLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L+ Sbjct: 61 AGERARGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++E+E + ++ R + +K A+S D MA S ITG ++ Sbjct: 121 GIEVLSGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 +V LRAQS +L G TVLADD LT R + L P+R+++D ++ Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVP 240 Query: 232 LDSKIIKTA-LLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGR 285 L + L D LA LA N ++ DL+KLL L GR Sbjct: 241 LSKAFFQVGPALVATCAAAAARDRYLADDHELLAVPGSNGHV------DLRKLLQELAGR 294 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GV +LVE G +A +F + LVD ++ + ++G P Sbjct: 295 GVNEVLVEAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARP 335 >gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis IP 31758] gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis IP 31758] Length = 369 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 178/331 (53%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L + P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V +D P NI + Y + DL L+ L R + S+ Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 381 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 182/345 (52%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL +A Sbjct: 9 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA ++E G+ RVV + DP+ VSGRGL L G Sbjct: 69 GELARGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNAG 128 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E+E + +L R R +I +K+A+S D MA S ITG +++ Sbjct: 129 IGVQCGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARSA 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVL D LT R L P+R+++D ++ L Sbjct: 189 VQRLRAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVPL 248 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL+KL+ Sbjct: 249 DAPFFQA---GNALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRKLMGE 297 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 298 LGARGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 342 >gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [marine bacterium HP15] Length = 371 Score = 205 bits (522), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 188/370 (50%), Gaps = 31/370 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D M+ A++ + T NP V C+I + +V+G G G HAE +AL + Sbjct: 2 IENRDRAMMARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ V DP+ VSGRGL L + Sbjct: 62 AGPDARGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ E ++ R R + LK+A S D MA S ITG ++ Sbjct: 122 GIRVTEGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V LRA SDAIL G+GTVLADDP LT R L + P+R+I D + Sbjct: 182 DVQRLRAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSS 241 Query: 234 SKIIK-----------TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 +KI++ T AP + + +A++ I DL +LL L Sbjct: 242 AKILQGGNVQVFCASSTLATAPAQDLAALGISLTGVAWKDNGI--------DLAELLDSL 293 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFM 339 G+ LLVE G +A +FIN LVD + LY++ + +G G P+ PLE + + Sbjct: 294 GELGINELLVEAGPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWK 353 Query: 340 CVRRDYFGSD 349 + R G D Sbjct: 354 VLDRRQVGED 363 >gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803] gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803] Length = 379 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 180/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGILEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPSSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYEFENIAIFQMKTKQIEVQDILDLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 QTNNFNEIVTYISPKLIGGKDAPT 334 >gi|170717790|ref|YP_001784854.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336] gi|168825919|gb|ACA31290.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336] Length = 376 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 189/331 (57%), Gaps = 15/331 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL +A Sbjct: 6 SAQDEYFMQIALDLAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALRDA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L G Sbjct: 66 GDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQAAG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +++ + ++ +LTR ++ + LK+A+S D MA S I+G ++ Sbjct: 126 IESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQARQD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLS 231 V RA+ AIL TVLADDP L R + LQ++ P+RIILD ++ Sbjct: 186 VQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEDVRQPVRIILDRQHLVT 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSL 290 K+ + +PV +V + + + A + I + + L+ LL L R + SL Sbjct: 246 PRHKLFQCQ--SPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQINSL 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +E G +A +FI LV+ +I+Y + ++G Sbjct: 304 WLEAGETLAGAFIEENLVNELIIYMAPKLLG 334 >gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf. prausnitzii KLE1255] gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf. prausnitzii KLE1255] Length = 374 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + +++ E K+F H Y+T KR ++++K A++ D I S ITG I++N Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPYVSMKYAMTMDGKIATYTGASKWITGEIARN 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + I+VG+GT+LADDP LTCR+ G ++ P+RII D H + L S+++ TA Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 P I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348 + S + S +V + Y + + G EG G+P P + + KN R + G Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352 Query: 349 DVCLEYIGKNLCLQE 363 D +E + CL E Sbjct: 353 DFLIESEVEYPCLPE 367 >gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Pantoea vagans C9-1] gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Pantoea vagans C9-1] Length = 366 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 129/337 (38%), Positives = 182/337 (54%), Gaps = 26/337 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M+ AL +R T NP+V C+IV+DG V+G G G PHAEV AL AGE Sbjct: 1 MDERYMARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGID 120 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L Q P+R+I+D +++ Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQ 240 Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++I +T L+ P + D +A+ R++ + DL ++ +L R + Sbjct: 241 HRLISQPGETWLMRHQPDQQLWPADVTQIAVPLREQQL--------DLVAMMMLLGQRQI 292 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE GA +A + + + LVD +I+Y + ++G G Sbjct: 293 NSVWVEAGATLAGALLQAGLVDELIVYLAPKLLGHEG 329 >gi|58583479|ref|YP_202495.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 369 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 197/362 (54%), Gaps = 16/362 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP +T RL + + P+R++LD + +L K I+ Sbjct: 188 DVQRWRARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLR-TLACKNIRNG 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + + D V A A ++ DL +L +L RG+ + VE GA + Sbjct: 247 -DAPTLYL--HGDAVAATALDGAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRD--YFGSDVCL 352 + + + + LVD +++Y + +++G+ PL G + + + RD G D+ L Sbjct: 304 SGALLQAGLVDELLVYMAPVLLGD--TARPLLAGLGIETMAQRYELQLRDVRQLGQDLRL 361 Query: 353 EY 354 Y Sbjct: 362 RY 363 >gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus JW 200] gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus JW 200] Length = 360 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 186/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ +G Sbjct: 4 YMKRALKLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG ++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 MME E + ++ K + LK A+S D I S IT S+ H +R Sbjct: 124 MMEKEARKLNEIFVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + SP+RII+D + L S +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRTPLASNVIRDKAAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ + RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S + +VD ++ + S +IG +P+E Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2] gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2] Length = 360 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 192/354 (54%), Gaps = 14/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 +L+D IILY + +IG PS ++E + +D D+ IGK+ Sbjct: 298 KLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 346 >gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] Length = 356 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 117/316 (37%), Positives = 179/316 (56%), Gaps = 8/316 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ +L +R G TS NP V +IV+D ++G G G PHAE+ AL+ AG++A+GA Sbjct: 1 MNLSLENARAMKGQTSPNPLVGAVIVRDNEIVGVGAHMKAGEPHAEIHALKMAGDKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVITGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + + +K +TLK ++ D I A S IT S+ H +R+ Sbjct: 121 LEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETSRYDAHHIRSI 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +DAILVG TV+ DDP LT R+ NG H P+RI+LD L +KI+ + I Sbjct: 181 NDAILVGAQTVIHDDPSLTARIPNG---HHPIRIVLDSRLSTPLTAKIVTDQMAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T+ D A +++ D L+++L +L R V+SL++EGG + SF+ Sbjct: 238 TKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQINASFLEQ 297 Query: 306 RLVDSIILYRSQIVIG 321 +LVD +++Y + +IG Sbjct: 298 QLVDKLVIYMAPKLIG 313 >gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355] Length = 367 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 179/328 (54%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ D Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 K+I+ L ++ + DD I + D + DL L+ +L R + S+ VE Sbjct: 243 KLIEQ-LGETWLMRQQVDDRHWPETV--TQIPVPLRDSQLDLVALMMVLGQRQINSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A + I + LVD +I+Y + ++G Sbjct: 300 AGATLAGALIQAGLVDELIVYVAPKLLG 327 >gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103] gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103] Length = 367 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/328 (39%), Positives = 179/328 (54%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ D Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 K+I+ L ++ + DD I + D + DL L+ +L R + S+ VE Sbjct: 243 KLIEQ-LGETWLMRQQVDDRHWPETV--TQIPVPLRDSQLDLVALMMVLGQRQINSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A + I + LVD +I+Y + ++G Sbjct: 300 AGATLAGALIQAGLVDELIVYVAPKLLG 327 >gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM 20544] gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM 20544] Length = 363 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 124/332 (37%), Positives = 179/332 (53%), Gaps = 5/332 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G TS NP V +IV+ G ++ G G PHAE+ AL AGE Sbjct: 3 DEEFMREALELARNAEGRTSPNPMVGAVIVQGGRIVAAGWHRKAGTPHAEIHALRMAGEL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYGR+ PCA+ ++E GI+R V+ + DP+ V+GRG++ L G+ Sbjct: 63 AKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGVET 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + +L EK + LK A++ D I S IT S+ +VH Sbjct: 123 VCGVLEEEARRLNEVFLKWVPEKIPFVALKTAMTLDGKIATRTGESQWITNETSRRRVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + D I VGIGTVL DDP LT RL +P+RII+D + L +K++ + Sbjct: 183 YRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVRIIVDSQARTPLTAKVVCDGQAKTI 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + VTE A + ++ DL+ L+ +L R + S+ VEGG V S Sbjct: 243 VAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRALMQMLGQREICSVFVEGGGRVNFSL 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 + + LVD + + + +IG +P+E EG+ Sbjct: 303 LRAGLVDKVYAFIAPKLIGGSEALTPVEGEGF 334 >gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822] gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822] Length = 369 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 3/334 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+FD M + +R +G TS NP V +IV++ ++G G G PHAEV AL A Sbjct: 10 SAFDREMMQRCITLARKALGATSPNPMVGAVIVREQEIVGEGFHPGAGQPHAEVFALSVA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+A+GAT Y+ LEPC+HYGR+PPC + +I+ GI +V+V + DPD RVSG+G++ L++ G Sbjct: 70 AEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTEAG 129 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E E + ++ R + +R LK A++ D I S +TG S+ Sbjct: 130 IEVVAGIEEEACRRLNEGFIHRVLYQRPFGILKYAMTLDGKIAATSGHSAWVTGEASRRI 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA+++G TV D+P LT +G+ H+P+R+++ L L++ + +T + Sbjct: 190 VHQLRAACDAVIIGGNTVRQDNPHLTT--HGVSSHNPLRVVMSRSLNLPLEANLWETDKV 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V+ E +P L K+ + +I + +++ L RG S+L E G +A S Sbjct: 248 PTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQHLYQRGFCSVLWECGGTLAASA 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 I +V ++ + + +IG PSP+ + L+K Sbjct: 308 ITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDK 341 >gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10] gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10] Length = 369 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 185/338 (54%), Gaps = 10/338 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG + Sbjct: 9 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V Sbjct: 69 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 128 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + + L+ A++ R +TLK A + D I S I+ S+ VH Sbjct: 129 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL G++ P+RII+D ++ LDS ++ L Sbjct: 189 LRHRHQGIMVGVSTVIADNPSLTTRL-GVEGLHPVRIIVDSSLRIPLDSHVVSDGLAPTW 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D + + C DLK L L +G+ S+L+EGG + S Sbjct: 248 ILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALLQLGQKGIASILLEGGGTLNGSM 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337 + +LVD +I + + +I GG +P + GY + N Sbjct: 308 LEQKLVDRLIQFIAPKII--GGYDAPGNYMFSGYEQMN 343 >gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas fluorescens Pf0-1] gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas fluorescens Pf0-1] Length = 376 Score = 205 bits (521), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 127/335 (37%), Positives = 181/335 (54%), Gaps = 20/335 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA FM+ AL +R T NP V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 9 LDAHFMARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALRAAGE 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+GR+PPCA ++ GI RVV + DP+ +V+GRGLQ L+ GI Sbjct: 69 RARGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIA 128 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + +K+A+S D M S ITG +++ V Sbjct: 129 TESGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-----LNGLQ-----EHSPMRIILDPHFKLSLDS 234 LRAQ+ +L G TVLAD LT R L+ Q P+R+++D ++ LD+ Sbjct: 189 RLRAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDA 248 Query: 235 KIIKT--ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291 K AL+A + + E A + + + D + DL +LL L RGV +L Sbjct: 249 PFFKAGPALVATCVAIEEQ------YAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 VE G +A +F LVD +++ + +G P Sbjct: 303 VEAGPRLAGAFAQFGLVDEFVIFIAGKFLGSTARP 337 >gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 378 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EA Sbjct: 6 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 126 ISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL++L+ Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARP 339 >gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] Length = 369 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 178/327 (54%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + M ALR + TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 123 IKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ Sbjct: 183 VQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGC 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ L D I+LYRS ++G G Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGG 327 >gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium D16] gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium D16] Length = 368 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 15/333 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R +G TS NP V ++VKDG +IG+G G HAE +AL+ Sbjct: 3 DTDYMNLALELARRGMGWTSPNPMVGAVLVKDGEIIGQGWHTRYGELHAEREALKNCTGS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 G T YVTLEPC H GR PPC Q I++ GI RVVV DDP+ V+G+GL+ L + GI V Sbjct: 63 PAGTTLYVTLEPCCHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGIQV 122 Query: 127 D-----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + ++ ++F H TR R ++ LK A++ D I S +TG ++ Sbjct: 123 ETGVCKQACDALNQVFFHFITTR----RPYVVLKYAMTMDGKIATRTGASKWVTGETARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH R + AIL G+GTVLADDP LTCR+ G + +P+R+I D H + L+S+I++TA Sbjct: 179 RVHEDRHRYRAILAGVGTVLADDPLLTCRMEGGR--NPIRVICDTHLRTPLESQIVRTAQ 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 P I+ T + + + R DL L+ L + S+L+EGG Sbjct: 237 EVPTILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALMDRLGAENIDSVLLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 + S + LV + Y + + G G SP+E Sbjct: 297 LNWSALEQGLVQKVQAYIAPKLFGGGAAKSPVE 329 >gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] Length = 367 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/355 (35%), Positives = 192/355 (54%), Gaps = 14/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 244 TTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 ++L+D IILY + +IG PS ++E + +D D+ IGK+ Sbjct: 304 NKLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 353 >gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4] gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4] Length = 348 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/338 (36%), Positives = 186/338 (55%), Gaps = 18/338 (5%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+RIILD ++ +++ ++ I T N +A Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLLVEGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +IG PS +E + K +F V +DY Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 337 >gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus somnus 129PT] gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus somnus 129PT] Length = 376 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 189/331 (57%), Gaps = 15/331 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL +A Sbjct: 6 SAQDEYFMQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALRDA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L G Sbjct: 66 GDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQAAG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +++ + ++ +LTR ++ + LK+A+S D MA S I+G ++ Sbjct: 126 IESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQARQD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLS 231 V RA+ AIL TVLADDP L R + LQ++ P+RIILD ++ Sbjct: 186 VQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHLVT 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSL 290 K+ + +PV +V + + + A + I + + L+ LL L R + SL Sbjct: 246 PRHKLFQCQ--SPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQINSL 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +E G +A +FI LV+ +I+Y + ++G Sbjct: 304 WLEAGETLAGAFIEENLVNELIIYMAPKLLG 334 >gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans ES-2] gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans ES-2] Length = 366 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 185/322 (57%), Gaps = 6/322 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS+ D+R+M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL + Sbjct: 2 VSAEDSRWMAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLD 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GATAYVTLEPCSHYGR+PPC +I G+ RVVV + DP+ +V+GRG+ L Sbjct: 62 AGDAAHGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD +ME+ + + R + K+ +S D ++ S ITG ++ Sbjct: 122 GISVDCGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARL 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA+S A+L GI T+LADD +L R + E P R++LD H ++ LD++I++ + Sbjct: 182 DVQHWRARSCAVLTGINTILADDAQLNVREIDV-ERQPKRVVLDSHLRMPLDARILQGGV 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 L + +D + L + ++ D R DL ++ L RG +LVE GA + Sbjct: 241 L--IYAALRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAVLN 298 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 + + + LVD ++LY S ++G Sbjct: 299 GALLRAELVDEMLLYISPQLLG 320 >gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato Max13] gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato K40] gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 378 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 186/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EA Sbjct: 6 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 126 ISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL++L+ Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339 >gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] Length = 367 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 194/362 (53%), Gaps = 10/362 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G T+ NP V +IV++G ++G G G PHAEV AL AG+ Sbjct: 4 DEDFMREALLLAANARGRTAPNPLVGAVIVREGRIVGAGWHRKAGTPHAEVHALAMAGDL 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPCSH+GR+ PCA+ +++ G++RVV + DP+ V+G+G L G+ V Sbjct: 64 AHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGVEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + AYL EK +TLK A++ D I A S ITG ++ +VH Sbjct: 124 TVGVLAEEARRLNEAYLKWVTEKLPFVTLKTAMTLDGKIATAAGKSQWITGEAARRRVHE 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R +DAI+VGIGTVLADDP LT RL +P+R+I+D + L + +++ + Sbjct: 184 MRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVRVIVDSRARTPLAATVVQDGAAKTL 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + VT A + ++ + DL L+ +L R +TS+ VEGG + S Sbjct: 244 VAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATLMRLLAARDMTSVFVEGGGTLNFSL 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCV----RRDYFGSDVCLE-YIG 356 + + LVD I + + ++G +P+E G+ E V + G+D+ L Y+ Sbjct: 304 LAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELADAAVLTRLTAEQVGADILLTGYVA 363 Query: 357 KN 358 K Sbjct: 364 KE 365 >gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str. 1873] gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str. 1873] Length = 372 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 202/377 (53%), Gaps = 24/377 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ S+ +G T NP V +IVKD +IG G G HAE+ AL+ A E Sbjct: 1 MDLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYG++PPC II+ GI++V++ + DP+ V+GRG + L GI Sbjct: 61 DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E K ++ K LK A++ D I S I+ +S+ VH Sbjct: 121 VVEGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + I+VGIGT++ D+P LT R+ + RII+D ++ +++K++ A Sbjct: 181 EIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAK 240 Query: 245 VIIVTE---NDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 IIVT N + + + R K +I CD R DLK L+ L R + S+L+EGGA Sbjct: 241 TIIVTTELANREKIEVI--RDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAE 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGSD 349 + +S +N +VD +I + S +IG +P+E EG N ++ F D Sbjct: 299 LNYSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTISEGI---NLENIKVSRFQED 355 Query: 350 VCLE-YIG--KNLCLQE 363 + +E YI + LC QE Sbjct: 356 IVIEGYIKGEEKLCSQE 372 >gi|240127481|ref|ZP_04740142.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] Length = 361 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 121/321 (37%), Positives = 176/321 (54%), Gaps = 9/321 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S A+L GIGTVLAD+P L R L++ P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPPNSHLVTDGQSPTYIA 238 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 E D+ L +I I+ DL L+ +L G ++VE G + +F Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + L D I+LYRS ++G G Sbjct: 299 LAENLADEIVLYRSPKILGGG 319 >gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685] gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685] Length = 361 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 180/320 (56%), Gaps = 15/320 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 ++A RFS TS NP V C+I ++G+G G PHAEV AL +AGE A+GA Sbjct: 8 LAALGRFS------TSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQGA 61 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TA+VTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ V+G+GL L GI + + Sbjct: 62 TAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECGL 121 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E++ + +L+R +R + LK AVS D ++ S IT ++ V +LRA+ Sbjct: 122 LENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVLRAE 181 Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 S A+L GIGTVLAD+P+L R L++ P RI+LD +L S ++ I Sbjct: 182 SCAVLTGIGTVLADNPQLNVRDFPTLRQ--PARIVLDSRLRLPPYSHLVTDGQSPTYIAT 239 Query: 249 TENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E D+ L +I I+ D + DL L+ +L G ++VE G+ + +F+ Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEG 323 L D I+LYRS ++G G Sbjct: 300 AEDLADEIVLYRSPKILGSG 319 >gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44] gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44] Length = 379 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + G TS NP V ++VKDG ++G G G HAEV A+ AG++ Sbjct: 12 DQEYMNIALQLAESTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHAIHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI V Sbjct: 72 AYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPLVSGSGARRLQEAGISV 131 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I + S ITG +++ VH Sbjct: 132 TTGVLEEEATTLNRYFFHYMKTKLPFVTIKTAMSLDGKIATSTGESKWITGEDARDDVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT RL +H P+RIILD H + L S II + Sbjct: 192 YRHTHDAILVGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHIITDGIAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ D + + I++ + ++++ L++L + + SL VEGG +V SF+ Sbjct: 251 IIVGKDVDKGKITTYESQGISVFQMKTKQIEIREFLSLLGEKQILSLFVEGGQSVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 ++ + I+ Y S +IG P+ Sbjct: 311 EAKCFNEIVTYISPKLIGGKDAPT 334 >gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212] gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212] Length = 366 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/325 (36%), Positives = 182/325 (56%), Gaps = 9/325 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FMS ALR + + T+ NP V C++ D +IG G G PHAE+ AL Sbjct: 3 SSVDYAFMSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINALAST 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E A GATAY+TLEPCSHYGR+PPC +I+ GI +V++ ++DP+ VSGRG L Q G Sbjct: 63 SEAACGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +++ + + ++ R + K+ I LK A S D + S ITG ++ Sbjct: 123 ITVQTGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S AI+ GIGTV +D+P+L+ R + P +II+D H + L++K++++ Sbjct: 183 GHRWRARSCAIMTGIGTVKSDNPQLSVR-HAETARQPKKIIVDSHLNIPLNAKLLQSD-- 239 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 V+I T +D+ V A + +I DLKK++T+L + +LVE G Sbjct: 240 GEVLIFTAHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGRE 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322 + + I + LVD +I Y + ++G+ Sbjct: 300 LNGALIEAGLVDEMIFYLAPHLLGD 324 >gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus pumilus SAFR-032] gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus pumilus SAFR-032] Length = 363 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 119/322 (36%), Positives = 186/322 (57%), Gaps = 16/322 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+M+ AL +R G TS NP V +IV++ ++G G G PHAE+ AL+ AG++A+ Sbjct: 6 RYMNLALENARAMKGQTSPNPLVGAVIVRENEIVGVGAHMKAGEPHAEIHALKMAGDKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L GI ++ Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVIT 125 Query: 128 RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++E E ++F H ++T+ K +TLK ++ D I A S IT S+ Sbjct: 126 GVLEQESILMNEVFNH-FITK---KTPFVTLKAGITLDGKIASATSDSKWITSETSRYDA 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +R+ +DAILVG TV+ DDP LT R+ NG + P+RI+LD L +KI+ + Sbjct: 182 HHIRSINDAILVGAQTVIHDDPSLTARIPNG---NHPIRIVLDSKLSTPLTAKIVTDQMA 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVA 299 I T+ D A +++ D L+++L +L + V+SL++EGG + Sbjct: 239 PTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGEKNVSSLMIEGGGQIN 298 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 SF+ +LVD +++Y + +IG Sbjct: 299 ASFLEQQLVDKLVIYMAPKLIG 320 >gi|21230168|ref|NP_636085.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769842|ref|YP_244604.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. 8004] gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. campestris str. B100] gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. 8004] gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. campestris] Length = 364 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 198/369 (53%), Gaps = 19/369 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M VS+ + R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL Sbjct: 1 MSVSADNHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE+ARGATAYVTLEPC+HYGR+PPCA +I G+ RVV + DP +V+G G L Sbjct: 61 RAAGEQARGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V +ME++ + +L+R R + +K+ S D MA S ITG + Sbjct: 121 DAGIQVHSGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSK 235 + V RA++ IL G GTVLADDP +T RL E + P+R++LD + + Sbjct: 181 RADVQRWRARAGVILTGAGTVLADDPSMTVRLG---EDTPCVPPLRVVLDAGLRTLACAN 237 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVE 293 I + AP + + D V A AF ++ DL +L L RG+ + VE Sbjct: 238 IRQGD--APTLYLHGAD--VTAPAFDGAEFAAMPLHAGRFDLAAVLASLAERGINEVHVE 293 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GA ++ + + + LVD +++Y + +++GE PL G L + M R DV Sbjct: 294 AGATLSGALLQAGLVDELLVYMAPVLLGE--TARPLLAG-LGIDTMAQRHALQLLDV--R 348 Query: 354 YIGKNLCLQ 362 +IG++L L+ Sbjct: 349 HIGQDLRLR 357 >gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii M21/2] gi|158443838|gb|EDP20842.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii M21/2] Length = 374 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 202/375 (53%), Gaps = 28/375 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + +++ E K+F H Y+T KR +++K A++ D I S ITG I++N Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIARN 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + I+VG+GT+LADDP LTCR+ G ++ P+RII D H + L S+++ TA Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 P I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348 + S + S +V + Y + + G EG G+P P + + KN R + G Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352 Query: 349 DVCLEYIGKNLCLQE 363 D +E + CL E Sbjct: 353 DFLIESEVEYPCLPE 367 >gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus Ab9] gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus Ab9] Length = 360 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 185/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ +G Sbjct: 4 YMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI++V + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 MME E + + K + LK A+S D I S IT S+ H +R Sbjct: 124 MMEKEARKLNEIFFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + +P+RII+D ++ L+S +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--NPVRIIVDSRGRIPLNSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S +VD ++ + S +IG +P+E Sbjct: 298 SAFKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Aminomonas paucivorans DSM 12260] gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Aminomonas paucivorans DSM 12260] Length = 378 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/325 (37%), Positives = 178/325 (54%), Gaps = 20/325 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + G S NP V C++V++G V+G G G PHAEV+AL AG A G Sbjct: 21 FMHMALSLALRGTGFVSPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRAGTLAEG 80 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 +T YV LEPCSH G++PPCA ++E + R VV + DP+ RV GRG+ L GI +++ Sbjct: 81 STVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEVLES 140 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + ++ R R +TLK A+S D + S ITG +++++ HLLR Sbjct: 141 VLPEEARWINRGFIRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHLLRG 200 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG+GTVL DDPELT R ++ P R++LD + +K++ + Sbjct: 201 EHDAILVGVGTVLLDDPELTVR--SVEGVCPRRVVLDGALRTPQTAKVLAS---GGCTFF 255 Query: 249 TENDDPVLA-LAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAV 298 TE D P A ++ I CR L +L L G+ +LLVEGGA V Sbjct: 256 TEQDMPQGAGQRLEERGAEI----CRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARV 311 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 A SF+ +LVD + L+ + ++G G Sbjct: 312 AGSFLREKLVDEVSLFLAPKLLGRG 336 >gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4] gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4] Length = 373 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 184/331 (55%), Gaps = 14/331 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + + T NP V C++V+ G ++G G + G HAEV AL +A Sbjct: 6 DRAYMARALKLAWRGLFTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC H GR+PPC + +IE G+ RVV + DP+ +V+G+GL L + G+ V Sbjct: 66 ARGATCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQV 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + ++ R V+ R + K+A+S D +A S IT ++ V Sbjct: 126 EYGLLQEEAQALNPGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKIIK 238 RA+S AIL GIGTV+ DDP L R LQ + P R+ILD +S ++++ Sbjct: 186 WRARSSAILTGIGTVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLL- 244 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEG 294 +L PV+I + + A + R K +I + DLK L+ +L R + L VE Sbjct: 245 -SLPGPVLIACADGEQPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVEC 303 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 GA +A S + + L+D ++LY + ++GE + Sbjct: 304 GARLAGSLLQAGLMDELVLYIAPKLMGEASL 334 >gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfitobacterium hafniense Y51] gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfitobacterium hafniense Y51] Length = 372 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/331 (39%), Positives = 191/331 (57%), Gaps = 11/331 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +MS AL + +G TS NP V C+IVKDG+++G G G PHAEV AL+ AGE Sbjct: 10 LDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGVIVGEGYHQKAGTPHAEVHALQAAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ VSG+G+ L GI Sbjct: 70 HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGIQ 129 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD + E E + +L + K A++ D I S ++ S+ VH Sbjct: 130 VDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVSNEASRAYVH 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR D I+VG TV D+P L CR++ + P+R+++D ++ L + ++ ++ AP Sbjct: 190 RLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLLVDGALQIPLQAAVLASSCTAP 247 Query: 245 VIIVTENDDPVLAL-AFRK-KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I T P+ L A R +N+ + D LK LL LV RG S+L+EGG +A Sbjct: 248 CLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGLA 307 Query: 300 HSFINSRLVDSI-ILYRSQIVIGEGGIPSPL 329 S + ++L+D + +Y +++ G+G PSPL Sbjct: 308 GSLLRAQLIDEVEFIYAPKLIGGKG--PSPL 336 >gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC 11563] gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC 11563] Length = 364 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 8/328 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 +M AL + G T +NP V +IVK+ +IGRG G HAE +AL++A E+ Sbjct: 4 YMQEALDLAELGQGWTRSNPMVGAVIVKNSQIIGRGYHQQYGGLHAEREALKDANEQGHD 63 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YVTLEPC H+G++PPC Q IIE GI +VVV DP+ V+G+G+Q L I V Sbjct: 64 VKGATMYVTLEPCCHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHIEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + + +R ++T+K A++ D S IT I++ VH Sbjct: 124 ETGLLAEESEDLNRKFNYFMTHQRPYVTMKYAMTLDGRTAAYTGDSQWITDKIAREHVHY 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ++ +I+VGIGTVLADDP LT R++ + +P+RI+ D KL L+S+++ TA P Sbjct: 184 QRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIRIVCDTSLKLPLNSQLVATAKETPT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHS 301 II T N +P A++ ++ +D K L+T L +G+ S+ VEGG+ + S Sbjct: 244 IIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLDLITQLGQQGIQSIYVEGGSKLNAS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + + L+ I Y VIG SP+ Sbjct: 304 LLEAGLIQEIHTYIGPKVIGGFDQYSPI 331 >gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 369 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/331 (38%), Positives = 177/331 (53%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L + P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V +D P NI + Y + DL L+ L R + S+ Sbjct: 244 KVIQQDGPCWLARVDADDQPW------PGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8] gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Marinobacter aquaeolei VT8] Length = 363 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 179/342 (52%), Gaps = 19/342 (5%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 T NP V C+I K +++G G G HAEV+AL +AG EARGATAYVTLEPCSHYGR Sbjct: 16 THPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQAGHEARGATAYVTLEPCSHYGR 75 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLT 143 +PPCA+ +I+ G+ V DP+ VSGRGL L + GI + + +M E ++ Sbjct: 76 TPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVTEGVMADEAARLNPGFMK 135 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R R + LK+A S D MA S ITG ++ V LRA SDAIL G+GTVLAD Sbjct: 136 RMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRLRAISDAILTGVGTVLAD 195 Query: 204 DPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTA----LLAPVIIVTEN 251 DP LT R + + + P+R+I D + ++I++ A + + Sbjct: 196 DPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQGGNVQVFCASSTLASGP 255 Query: 252 DDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + AL + + D D+ +LL L G+ LLVE G +A +FI LVD Sbjct: 256 AQDLAALGV--SLTGVAWKDNGVDVAELLDALGELGINELLVEAGPTLAGTFIGENLVDE 313 Query: 311 IILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSD 349 + LY++ + +G G P+ PLE + + + R G D Sbjct: 314 LWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGED 355 >gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittAA] gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittAA] Length = 372 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDHVFMQRALDLATKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L T++ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ ++P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333 >gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis 11-1] gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis 11-1] Length = 365 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/325 (38%), Positives = 179/325 (55%), Gaps = 6/325 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 +FD M+ AL+ + + NP V C++ KDG V+G G G PHAEV AL EAG Sbjct: 7 AFDHACMARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALREAG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPC+H+GR+PPCA+ +++ G+ RVV + DP RV G G L GI Sbjct: 67 ERARGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQAAGI 126 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +ME + + +L+R R + +K+A S D MA S ITG ++ V Sbjct: 127 AVAAGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAARADV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA+S AIL G TVLADDP LT RL + P+R++LD + SL ++ Sbjct: 187 QRWRARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLR-SLAMPRVRDG-S 244 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + D V + + D DL+ L +L GR + + VE G A+ + Sbjct: 245 APTLYL-HGPDAVPPPGLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALCGA 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 +++ LVD ++LY++ +V+G+ P Sbjct: 304 LLHAGLVDELLLYQAPLVLGDTARP 328 >gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA] gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA] Length = 369 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 203/368 (55%), Gaps = 14/368 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EA Sbjct: 3 KTVDEKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + G Sbjct: 63 GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++E E K +L K ++ LK ++ D I S IT +++ + Sbjct: 123 IKVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNELAREK 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238 V LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +DSK + Sbjct: 183 VQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLH 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294 IIVT ND+ L +N+ +IY + + ++ +L L + S+L+EG Sbjct: 243 FN-DNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMEDILKELGKLNIDSVLLEG 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G+ + + ++D+ ++ + +IG+ P G+ NF + + S+ Sbjct: 302 GSGLISTAFKENVIDAGEIFIAPKIIGDNS-SIPFISGF---NFNSMEEVFKLSNPKFNI 357 Query: 355 IGKNLCLQ 362 G N+ ++ Sbjct: 358 YGDNISIE 365 >gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876] gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876] Length = 350 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 124/342 (36%), Positives = 188/342 (54%), Gaps = 14/342 (4%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+R+ILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 +IG PS ++E N + +D D+ IGK+ Sbjct: 300 KIIGGRLAPS-----FVEGNGITKMKDAIEFKDISFTQIGKD 336 >gi|84515381|ref|ZP_01002743.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis SKA53] gi|84510664|gb|EAQ07119.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis SKA53] Length = 359 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/329 (40%), Positives = 192/329 (58%), Gaps = 14/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL+ R +G NP+V C+IV G ++GRG T GG PHAE AL +AG + Sbjct: 3 DARYMALALQLGRRGMGRVWPNPAVGCVIVNHGRIVGRGWTQDGGRPHAETVALAQAGPD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPC+H+G++PPCA +I G+ RVVV + DPD RV+GRG+ L Q GI V Sbjct: 63 ACGATVYVTLEPCAHHGQTPPCAAALIAAGVARVVVALGDPDARVAGRGIALLEQAGIAV 122 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + ++ HA +L+R R +TLK+A + D I A S ITG ++ VH+ Sbjct: 123 ETGLLADQARADHAGFLSRITAARPFVTLKLAGTLDGRIATASGESQWITGTEARRAVHM 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA+LVG GTV ADDP L+ R G+ P+RI++ KL L S++ +TA +PV Sbjct: 183 MRARHDAVLVGAGTVRADDPALSVRGLGIPRQ-PVRIVVSRAVKLPLTSQLAQTARQSPV 241 Query: 246 IIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 I + V LAL + C R + + ++ L G+T + EGG + Sbjct: 242 WICHGAEADVADWLALGAVS-----LPCAVRAGQVEPEAMMQALASAGITRVFCEGGGML 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A S + + LVD +++ + IG G P+ Sbjct: 297 AASLLGAGLVDDLVVMTAGCAIGAEGTPA 325 >gi|237739215|ref|ZP_04569696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 2_1_31] gi|229423815|gb|EEO38862.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 2_1_31] Length = 369 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 203/368 (55%), Gaps = 14/368 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EA Sbjct: 3 KTVDKKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + G Sbjct: 63 GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++E E K +L K ++ LK ++ D I S IT +++ + Sbjct: 123 IKVDLGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRRGKSKWITNELAREK 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238 V LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +DSK + Sbjct: 183 VQFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLH 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294 IIVT ND+ L +N+ +IY + + +K +L L + S+L+EG Sbjct: 243 FN-DNKAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMKDILKELGKLNIDSVLLEG 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G+ + + ++D+ ++ + +IG+ P G+ NF + + S+ Sbjct: 302 GSGLISTAFKENVIDAGEIFIAPKIIGDNS-SIPFINGF---NFDSMEEVFKLSNPKFNI 357 Query: 355 IGKNLCLQ 362 G N+ ++ Sbjct: 358 YGDNISVE 365 >gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17] gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17] Length = 370 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI + Sbjct: 63 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I S ITG +++ VH Sbjct: 123 TTSVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT RL +H P+RIILD H + L S +I + Sbjct: 183 YRHTHDAILIGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHVITDEMAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + + ++++ +++ LL +L + + SL VEGG +V SF+ Sbjct: 242 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 ++ + I+ Y S +IG P+ Sbjct: 302 ETKCFNEIVTYISPKLIGGKDAPT 325 >gi|114765495|ref|ZP_01444605.1| riboflavin biosynthesis protein RibD [Pelagibaca bermudensis HTCC2601] gi|114542205|gb|EAU45236.1| riboflavin biosynthesis protein RibD [Roseovarius sp. HTCC2601] Length = 350 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/305 (41%), Positives = 176/305 (57%), Gaps = 7/305 (2%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP+V C+IVKDG V+GRG TA GG PHAE QAL +AGE ARGATAYVTLEPCSH+G++PP Sbjct: 7 NPAVGCVIVKDGRVVGRGATAPGGRPHAEPQALAQAGEAARGATAYVTLEPCSHHGKTPP 66 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA-YLTRQV 146 CA+ +++ G+ RVV + D D RVSG+G L + GI V + +E HA + R Sbjct: 67 CAEALVKSGVARVVAPLADNDARVSGQGFAHLRKHGIEVTTGVLAEDAARDHAGFFLRND 126 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R +TLK+A S D I A S ITG ++ VH LRA DA++VG GT ADDP Sbjct: 127 HGRPLVTLKLANSFDGRIATATGESQWITGPEARRYVHGLRASHDAVMVGAGTARADDPA 186 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA-LAFRKKNI 265 LT R G + P+R+I+ + L S + +A PV + +D + A++ Sbjct: 187 LTVRGWG-EVQQPVRVIVSRLIDVPLMSTLASSAREVPVWLAHGSDAASMTKRAWQSCGA 245 Query: 266 NIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ C D LL+ L G+T + EGG +A S + + LVD ++ + + I +G Sbjct: 246 KLLQCKVSGGRIDPHALLSALGKEGLTRVFCEGGGQLAASLLAADLVDELVGFTAGIAVG 305 Query: 322 EGGIP 326 G P Sbjct: 306 AEGRP 310 >gi|221639820|ref|YP_002526082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides KD131] gi|221160601|gb|ACM01581.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides KD131] Length = 362 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/324 (40%), Positives = 190/324 (58%), Gaps = 7/324 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG Sbjct: 3 DADHMAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + Sbjct: 63 ALGATAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +R++E+E + +L R E +TLK+A + D I A S ITG +++ VH Sbjct: 123 TERVLEAEARTAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R + DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV Sbjct: 183 MRMRHDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPV 241 Query: 246 IIVTENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + P A A + I+ C D + + +L L G+T + EGGA + Sbjct: 242 WLCHGPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGA 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGG 324 + + + L D ++ + + +IGE G Sbjct: 302 ALVRAGLCDELVTFTAGKLIGEEG 325 >gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396] gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396] Length = 362 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 120/327 (36%), Positives = 180/327 (55%), Gaps = 16/327 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C++VK+G+++G G G HAEV AL AGE ARGA Sbjct: 1 MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALRAAGESARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPCSHYGR+PPCA+ +++ G+RRV+ ++DP+ V+G+GL L G+ + Sbjct: 61 DCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESEVGC 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M +E + R + R + +K+A S D + S ITG ++ V LRA+ Sbjct: 121 MAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSKIIKTALLA 243 S A++ GIGT++AD+P L R L++ PMR+ LD + DS ++K L Sbjct: 181 SSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLK--LPG 238 Query: 244 PVIIVTENDDPVLALAFRKKN------INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 +++V D LA R+ + + + + R DLK LL+ L R +LVE GA Sbjct: 239 KILLVACTDPSEGWLAQRQSSGADLEVLKLAGENGRIDLKALLSTLAARECNEVLVEAGA 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ L D I Y + ++GEG Sbjct: 299 NLAGAFVAQGLADEIWTYTAPKLMGEG 325 >gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15] gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15] Length = 348 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/338 (36%), Positives = 186/338 (55%), Gaps = 18/338 (5%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+RIILD ++ +++ ++ I T N +A Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +IG PS +E + K +F V +DY Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDVSFTQVGKDY 337 >gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea MMB-1] gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea MMB-1] Length = 383 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 188/331 (56%), Gaps = 13/331 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +MS A++ ++ + T NP V C+IVKD +IG G A G HAEV AL A E Sbjct: 10 EYMSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMESVE 69 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPCSH G++PPCA +I+ GI VV + DP+ +V+GRGL L + G+ ++ Sbjct: 70 GATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQVIG 129 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E + + R E +I LK+A+S D M S ITG ++ V LR Sbjct: 130 PVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQRLR 189 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTA 240 AQSDAI+ GIG+V+ D+P +T R++ + P+R+I+D + ++KI+K Sbjct: 190 AQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILKPG 249 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGG 295 A + V E+ + A +K +NI + D R DL + + +L +G+ +LVE G Sbjct: 250 KEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVETG 309 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 A +A +F+ LVD +++Y + ++G P Sbjct: 310 AELAGAFLREGLVDELVVYVAPKLLGSDARP 340 >gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus JW/NM-WN-LF] Length = 380 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 200/372 (53%), Gaps = 24/372 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G T+ NP V ++VK+ ++ +G G PHAE ALE+AG E Sbjct: 8 DRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVAQGYHGRLGGPHAEAVALEKAGRE 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G T YVTLEPC HYG++PPC IIE G++RVV+ DP +++G+G++ L Q GI V Sbjct: 68 ASGTTMYVTLEPCCHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAGIKV 127 Query: 127 DRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + E + +IF +T ++ K +S D I S IT ++ Sbjct: 128 EVGLKKAEAEKQNEIFRKYIVT----GLPYMIGKWGMSLDGKIATHTGDSRWITSEKARF 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRA+ AI+VGIGTV ADDP LTCR P+RI++D H +LSL SK+++ Sbjct: 184 DTHRLRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPVRIVVDSHLRLSLQSKVLEKIS 243 Query: 242 LAPVIIVT----ENDDPVLALAFRKKNI--NIIYCDCR-----DLKKLLTILVGRGVTSL 290 P II T ++ + +A + +N+ ++Y D+ +L+ +L RG+ S+ Sbjct: 244 ETPTIIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTSTGKVDIFELVKLLGQRGLDSV 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 LVEGG + S I + D I+Y +VIG P+P+ K F ++ +++ Sbjct: 304 LVEGGETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPVG----GKGFQALKDSVMLNNM 359 Query: 351 CLEYIGKNLCLQ 362 EY G ++ ++ Sbjct: 360 EYEYFGDSIRIE 371 >gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1] gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1] Length = 357 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 111/318 (34%), Positives = 172/318 (54%), Gaps = 2/318 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + + G T NP+V LIVKD ++ G G HAE+ AL+ A E+ Sbjct: 5 DKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDDKILSIGAHKKAGTDHAEIVALKNAQED 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YVTLEPCS +G++PPC II GI++VV+ DP+ +VSG+G++WL GI V Sbjct: 65 VKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSAGIEV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + +KR ITLK A+S D + S I+ ++ H+ Sbjct: 125 EVGVLKEECDKLNEDFFVYITQKRPFITLKCAMSLDGKLAKENKDSKWISSEKARKISHI 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R S AILVGI T+L D+P+LT RL G E+ P +++DP+ + D+ I K + Sbjct: 185 YRKYSSAILVGINTILKDNPKLTVRLEG-NEYQPYSVVIDPNLDIPYDANIFKKGYENII 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 IIV+ D + + ++ + D+K +L L + + VEGGA F+ Sbjct: 244 IIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKALYEIDIMHIFVEGGAYTISRFLEE 303 Query: 306 RLVDSIILYRSQIVIGEG 323 + D ++++R IG+G Sbjct: 304 NMWDKMLIFRGYKFIGKG 321 >gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM 12442] gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM 12442] Length = 373 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 6 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLLAGEEHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI V Sbjct: 66 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I S ITG +++ VH Sbjct: 126 TTGVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT RL +H P+RIILD H + L S +I + Sbjct: 186 YRHTHDAILIGVNTVIADNPSLTTRLPNGGKH-PIRIILDTHLRTPLSSHVITDEMAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + + ++++ +++ LL +L + + SL VEGG +V SF+ Sbjct: 245 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 ++ + I+ Y S +IG P+ Sbjct: 305 ETKCFNEIVTYISPKLIGGKDAPT 328 >gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus cereus E33L] gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus cereus E33L] Length = 367 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 197/356 (55%), Gaps = 16/356 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV-I 246 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ T + AP I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVV-TDVEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 ++L+D +ILY + +IG PS ++E + +D D+ IGK+ Sbjct: 303 ENKLMDKLILYFAPKIIGGRLAPS-----FVEGTGITKMQDAIEFKDISFTQIGKD 353 >gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. B076] gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. race 4] gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/346 (36%), Positives = 182/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 LAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 LD+ + ++VT E +LALA ++ DL+KL+ Sbjct: 245 LDAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMG 293 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 294 ELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339 >gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437] Length = 368 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 16/361 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M ALR + G TS NP V ++VKDG ++G G G PHAEV ALE+AG+ Sbjct: 8 DERWMELALRLAEAARGQTSPNPLVGAVVVKDGQLLGSGAHLKAGTPHAEVHALEQAGKS 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G+T YVTLEPC+HYGR+PPC + I G+RRVVV DPD VSG+G+Q L + G+ V Sbjct: 68 AKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRLREAGLSV 127 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ L+ AY + +TLK AV+ D + S +TG ++ +VH Sbjct: 128 KTGVLADRCTRLNEAYFHHRRTGFPFVTLKAAVTLDGKTATSDGDSRWVTGEAAREEVHR 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q DA+LVG GT L D P+LT RL G ++ P+R+++D ++ L+S + + Sbjct: 188 LRHQYDAVLVGSGTALHDRPQLTVRLPGGGKN-PLRVVVDSRLRMPLNSPLADVESASTW 246 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVAHSF 302 + T+ D A + + + KL ++ +GR G+ S+L E G + S Sbjct: 247 VFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVFRRLGREGIVSVLTESGGELNASL 306 Query: 303 INSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + V+ ++ + + ++G G +++ L ++ V D FG D+C+ Sbjct: 307 LREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQMKDALLLED---VSVDLFGRDICVTG 363 Query: 355 I 355 I Sbjct: 364 I 364 >gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24] gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24] Length = 348 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 8/310 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+RIILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPS 327 +IG PS Sbjct: 300 KIIGGRLAPS 309 >gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] Length = 367 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/355 (35%), Positives = 192/355 (54%), Gaps = 14/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G HAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 244 TTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 ++L+D IILY + +IG PS ++E + +D D+ IGK+ Sbjct: 304 NKLMDKIILYFAPKIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 353 >gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium botulinum H04402 065] Length = 365 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/361 (33%), Positives = 196/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE A+G Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGERAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGIGT++ D+P L R+ + SP II+D ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244 Query: 249 T--ENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T ++ +P A ++ + + L +L+ L GV S+L+EGG+ + S Sbjct: 245 TTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD ++ + S+ +IG G+ S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047] gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC 11116] gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047] gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC 11116] Length = 372 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 185/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH 391-98] Length = 370 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 183/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G ++G G G HAEV AL AG Sbjct: 3 DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKNGKIVGMGAHLRAGEEHAEVHALRMAGAH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC +I+ ++RVV+ D + V+G G + L + GI V Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPLVAGNGKKKLEEAGIYV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +TLK A+S D I S ITG +++ VH Sbjct: 123 TTGILEEEARSLNRYFFHYMKTKRPFVTLKTAMSLDGKIATTTGESKWITGDAARDDVHH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ T++AD+P LT RL NG + +P+RIILD H + L S ++ + Sbjct: 183 YRHTHDAILVGVNTIIADNPSLTTRLPNGGK--NPIRIILDTHLRTPLLSHVVTDRVAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 IIV +N L + +++++ + +++ LL++L + + SL VEGG ++ SF Sbjct: 241 WIIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLLSLLGEKQILSLFVEGGQSIHASF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + + + I+ Y S +IG P+ Sbjct: 301 LEANGFNEIVTYISPKLIGGKDAPT 325 >gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] Length = 370 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K N + ++ G D+ + +N Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20] gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW] gi|1172932|sp|P44326|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd KW20] gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW] Length = 372 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 186/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II+ LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIIFPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA ++ S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLSGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas mendocina NK-01] gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas mendocina NK-01] Length = 371 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 129/341 (37%), Positives = 182/341 (53%), Gaps = 23/341 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 1 MSEHDQLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+G GL L Sbjct: 61 AGDKARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++ESE + ++ R + +K A+S D MA S ITG ++ Sbjct: 121 GIEVRSGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 +V LRAQS +L G TVLADD LT R + L Q P+R+++D ++ Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTA-LLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGR 285 + + L D LA LA N ++ DL+KLL L GR Sbjct: 241 VSKAFFQVGPALVATCAAAAARDRYLADGHELLAVPGSNGHV------DLRKLLLELAGR 294 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GV +LVE G +A +F + LVD ++ + ++G P Sbjct: 295 GVNEVLVEAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARP 335 >gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407] gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407] gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 348 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 118/310 (38%), Positives = 176/310 (56%), Gaps = 8/310 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSHY Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSHY 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+RIILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L++ +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAP 299 Query: 318 IVIGEGGIPS 327 +IG PS Sbjct: 300 KIIGGRLAPS 309 >gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 378 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 181/345 (52%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL+KL+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 295 LATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339 >gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 86-028NP] gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 86-028NP] Length = 372 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 184/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TVLADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ + F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [NC10 bacterium 'Dutch sediment'] Length = 372 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/328 (38%), Positives = 182/328 (55%), Gaps = 9/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL + G TS NP V ++V+ G ++G G A G PHAEV ALE AG Sbjct: 6 DERFMRHALVLAEKGRGRTSPNPMVGAVVVQHGRIVGEGYHAQAGKPHAEVVALEYAGGA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AR A YVTLEPC HYGR+PPC II+ GIRRVVV DP+ VSGRG+Q L G+IV Sbjct: 66 ARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDAGVIV 125 Query: 127 DRMMESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + S L+ + ++ R+ + LK AVS D I S ++G S+ +H Sbjct: 126 DLGLRSADATALNEAFIKFMKHRTPFVVLKAAVSLDGKIATRTGDSRWVSGERSREHIHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR Q DA++VGIGTV D+P LT RL G ++ P+R+++D D++I++ + Sbjct: 186 LRDQIDAVIVGIGTVRRDNPRLTTRLPEGGRD--PIRVVVDGLGPFPDDAQILQAEAASR 243 Query: 245 VIIVTENDDPVLAL-AFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + D P + A ++ + ++ + L+ LL L R VTS+++EGG + Sbjct: 244 TWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLEHLLKRLGEREVTSVMIEGGEGIF 303 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 S I +VD +L+ + I++G PS Sbjct: 304 TSAIEEGIVDKFLLFVAPILLGGKTAPS 331 >gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 373 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTALSLDGKTATVTGESKWITGEEARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPT 328 >gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2] gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2] Length = 373 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPT 328 >gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense DSM 12261] gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense DSM 12261] Length = 369 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 183/325 (56%), Gaps = 14/325 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ +R G TS NP V C+IVK+ ++ G G PHAEV+AL+ AG+ Sbjct: 9 DEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRAGDG 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC+H+G++PPCA + + RVV+ + DP+ V+G+G++ L +I Sbjct: 69 AKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLIT 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E K ++ R ++R TLK A + D I + S IT S+N+ HL Sbjct: 129 ETGVLEDECKWVNRGFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAHL 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALL 242 LRA+ D I+VG+GTVL DDP LT R SP+RI++D + D+ I++ +L Sbjct: 189 LRAEHDGIMVGVGTVLRDDPSLTVRHT--VGRSPIRIVVDTMLRTPADAAILRGDGAIIL 246 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 A + L+ K I Y + DL+ IL RG+ S+LVEGGA + Sbjct: 247 AGISAQKMGKHDQLS----KAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 A +FI +L+D + L+ + ++G+G Sbjct: 303 ASAFIQEKLIDGLSLFIAPTIMGQG 327 >gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato str. DC3000] Length = 381 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EA Sbjct: 9 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L G Sbjct: 69 GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 128 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 129 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 189 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 248 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL++L+ Sbjct: 249 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 297 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 298 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 342 >gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia fergusonii ECD227] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V +L + N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ +F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus anthracis CI] gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar anthracis str. CI] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 189/351 (53%), Gaps = 18/351 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR IT+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N A + + +L ++L +L +G+ SLL+EGG V SFI Sbjct: 244 TTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGICSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 + L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 304 NELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 354 >gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550] gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550] Length = 379 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K N + ++ G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 194/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V +L + N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|149914282|ref|ZP_01902813.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b] gi|149811801|gb|EDM71634.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b] Length = 365 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 138/331 (41%), Positives = 193/331 (58%), Gaps = 6/331 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DARFM+ AL R G NP+V C++V++G V+GRG T GG PHAE QAL Sbjct: 1 MSRDDARFMALALSLGRRGQGRCWPNPAVGCVVVREGRVVGRGWTGVGGRPHAEPQALAR 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT YV+LEPC+H+GR+PPC++ +I G+ RVV V D D RVSG+G L Sbjct: 61 AGAAARGATVYVSLEPCAHHGRTPPCSEALIAAGVARVVAPVSDSDPRVSGKGFARLRSA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E L +L R R H+TLK+A S D I A S ITG +++ Sbjct: 121 GIEVTTGVLAEEAMRDLGGFLRRAGGGRPHLTLKLATSLDGRIATASGHSQWITGPQARH 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G P+RI++ L L S++ +TA Sbjct: 181 AVHAMRARHDAVMVGAGTARADDPMLTVRGQGDVARQPVRIVVSRRLDLPLMSQLAQTAR 240 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 PV + D D LA A+ I CD D++ +L L +G+T + EGG Sbjct: 241 EVPVWLCHGPDPDAALADAWDGIGAERIACDLTGRQLDMEAVLLALGQKGLTRIFCEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 ++A S + + LVD ++L+ + ++IG G+PS Sbjct: 301 SLAASLLGAGLVDELVLFSAGLMIGAEGLPS 331 >gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 378 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EA Sbjct: 6 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 126 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL++L+ Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339 >gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon 786 str. D14] Length = 373 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 129/364 (35%), Positives = 201/364 (55%), Gaps = 17/364 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL + G T TNP V ++VKDG ++G G G PHAEV AL AG + Sbjct: 6 DEYYMALALDMAERAQGQTGTNPVVGAVVVKDGALVGLGTHLKRGTPHAEVHALNMAGSQ 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSH+G +PPCA+ +I ++RVVV +DP+ V+G+G++ L GI V Sbjct: 66 AEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLRAAGIEV 125 Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E + L+ + + ++T+K A + D + S I+ ++ VH Sbjct: 126 EVGVLRERALKLNRRFIKFITTGMPYVTIKSASTLDGKLASRTGDSKWISNEGAREIVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 +R + AI+VG T+LADDP+LT RL+ GL SP+RII D ++ +++++ Sbjct: 186 MRHRHQAIMVGASTILADDPQLTTRLSVPGL---SPIRIIADSTLRIPETAQVLRDGQAP 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+ TE DP A ++ C DL+ L L RG++S+LVEGG + Sbjct: 243 TWIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNALVQLGQRGISSVLVEGGGRLNG 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY-LEKNFMCVRRDYFGSDVCLEYIGKN 358 S + +LVD I+L+ + +IG PS GY L ++ + +R D+ +E IG N Sbjct: 303 SLLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAGYDLMRDAVTLR------DMEVEQIGDN 356 Query: 359 LCLQ 362 +C++ Sbjct: 357 VCIR 360 >gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM 4541] gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM 4541] Length = 371 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 184/329 (55%), Gaps = 15/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C+IV+DG V+G G G PHAEV AL AG++ Sbjct: 5 DRIYMARAFELARKGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRMAGDK 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ GI Sbjct: 65 ARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQAGIET 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + +L R +I LK+A S D + S IT ++ V + Sbjct: 125 SSNILLEQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARKDVQV 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEH------SPMRIILDPHFKLSLDS 234 LRAQ+ AIL TV+ADDP LT R + L QE+ P+RI+LD H K++ + Sbjct: 185 LRAQASAILSTSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKVTPEH 244 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 ++ T L ++ D + + + + I+ + DL L+ L R + S+ VE Sbjct: 245 QV--TQLAGECWLIRPTPDNEVTWQGQVEQVPILADENGIDLVILMMQLAKRNINSIWVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322 G +A S + LVD +I+Y + ++G+ Sbjct: 303 AGPTLAGSLLKLGLVDELIVYIAPKLLGD 331 >gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA] Length = 375 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 180/330 (54%), Gaps = 9/330 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL ++ +G T+ NP V +IVK G VIG+G G PHAE +AL E+ Sbjct: 10 DRQYMKMALELAQKGMGFTAPNPMVGAVIVKRGKVIGQGYHRKYGEPHAEREALASCTEQ 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA+ YVTLEPC HYG+ PPC I+E GIRRV++ DP+ VSG+G++ L + GI + Sbjct: 70 PEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E A+ ++ ++ +K A++ D I S +TG ++ V Sbjct: 130 TENVLKEECDKLNEAFFYYIQNQKPYVVMKYAMTMDGKIATYTGASRWVTGEAARMHVQK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + I+ G+GTVLADDP LTCRL NG +P+RII D H + L+S+I+KTA P Sbjct: 190 QRLKYTGIMAGVGTVLADDPMLTCRLENG---RNPVRIICDSHLRTPLNSRIVKTASTIP 246 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T + D + ++ + DL +L+ +L + S+L+EGG + Sbjct: 247 TIFATSSKDQQKIKNYEDMGCKVLDVPEKNGHIDLNRLMELLGAAKIDSILLEGGGTLNW 306 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S + S +V + Y + + G +P+E Sbjct: 307 SALESGIVQKVQTYIAPKLFGGESAKTPIE 336 >gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus CCSD1] gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus CCSD1] Length = 360 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 185/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ +G Sbjct: 4 YMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME + + ++ K + +K A+S D I S IT S+ H +R Sbjct: 124 IMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + SP+RII+D ++ DS +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRIPFDSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S +VD ++ + S +IG +P+E Sbjct: 298 SLFKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676] gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676] Length = 379 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRTLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1] gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1] Length = 361 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/343 (35%), Positives = 187/343 (54%), Gaps = 11/343 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + T NP V +IVKDG ++G G G PHAE++AL+EAG Sbjct: 4 DEYFMQRALELAEKGRKTTGENPMVGAVIVKDGKIVGEGYHKKAGGPHAEIEALKEAGLN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC HYG++PPC + +I+ I RVV ++DP+ +V+G+G L GI V Sbjct: 64 AKGATIYVNLEPCCHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGIEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++++ ++ E+ + KIA S D I ++ S IT ++ + H Sbjct: 124 SVGVLKNKASKLNEVFIKNISEQTPFVIAKIAQSVDGKIALSSGKSKWITCDAARKKGHE 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R+ DAILVGIGTVLADDP L CRL +P++I+LD + ++SK+++ + Sbjct: 184 IRSMYDAILVGIGTVLADDPILDCRLAN-NAANPVKIVLDSSAVIPIESKLLQGKGKV-I 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + T D + +II +L +LL L G+ S+LVEGGA V SF+ Sbjct: 242 LATTAQADKGRLQKLEEMGADIIMTSQNKVNLNELLKALYNSGIYSILVEGGAKVFTSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 L+D +I++ S +IG G + Y+E F+ +D + Sbjct: 302 IEGLLDKLIVFLSPKIIGGDG------KDYVENLFLREMKDVY 338 >gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] Length = 370 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 199/362 (54%), Gaps = 14/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M AL + G + NP V +IV +G ++G+G + G PHAEV AL+EA Sbjct: 6 KNLDEYYMKMALNLALKGQGNVNPNPLVGAVIVNNGNIVGQGYHKFYGGPHAEVYALKEA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+G YV+LEPCSHYG++PPCA+ +++ GI++VV+ + DP+ V+G G++ L + G Sbjct: 66 GESAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ ++E E K ++ EK + LK A++ D I S ITG S+ Sbjct: 126 VEVIVGVLEEEAKKVNEIFIKYITEKTPFVILKTAMTLDGKIATKTGESQWITGEESRKY 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + I+ GIGT+ D+P LT R +++ SP II+D + ++SKI T Sbjct: 186 VHTIRNRVMGIMAGIGTIKKDNPLLTTRF--IEDGKSPTAIIVDSKLSIPVESKIFTTLN 243 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 +II TE D +K I II + DLK L+ L G+ S+L+EGG Sbjct: 244 ERKIIIACTEEFDAKKKEELEQKGIKIIITPKDNNRVDLKYLMKELGKEGIDSILLEGGG 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRR---DYFGSDVC 351 + S ++S++VD I+ + + ++G +P+E +E KN + + + G D+ Sbjct: 304 ELNFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEILKNAVLINKMNCKNVGEDLL 363 Query: 352 LE 353 +E Sbjct: 364 IE 365 >gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 200] gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 200] Length = 379 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] Length = 370 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325 >gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Faecalibacterium prausnitzii SL3/3] Length = 374 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 201/375 (53%), Gaps = 28/375 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + +++ E K+F H Y+T KR +++K A++ D I S ITG I +N Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIVRN 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + I+VG+GT+LADDP LTCR+ G ++ P+RII D H + L S+++ TA Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 P I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG Sbjct: 237 QVPTILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348 + S + S +V + Y + + G EG G+P P + + KN R + G Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352 Query: 349 DVCLEYIGKNLCLQE 363 D +E + CL E Sbjct: 353 DFLIESEVEYPCLPE 367 >gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15] gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4] gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4] gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15] gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 379 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVR---RDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K N + ++ G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia fergusonii ATCC 35469] gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia fergusonii ATCC 35469] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V +L + N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ +F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB 1003] gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB 1003] Length = 367 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/329 (38%), Positives = 184/329 (55%), Gaps = 12/329 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RFM AL + +G NP+V C+IV G ++GRG T GG PHAE +AL++ Sbjct: 1 MSEADGRFMRLALGLAGRGLGNVWPNPAVGCVIVNGGRIVGRGWTQPGGRPHAERRALDQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++DPD RVSGRG L Sbjct: 61 AGPAARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++ +E + +L+R R + LK+ S D I +A S ITG ++ Sbjct: 121 GIAVETGVLAAEARAAQAGFLSRIERGRPWLALKLGASFDGRIALANGESQWITGPQARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV LRA+ DA+LVG GT ADDP LT R + +P+R++ L ++ + Sbjct: 181 QVQALRARFDAVLVGGGTARADDPLLTLR-HFKPLRAPVRVVASRRLDLP-RGRLAGSLG 238 Query: 242 LAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKK--------LLTILVGRGVTSLLV 292 AP+ ++ + P A AF +I RD + LL L RG+T + Sbjct: 239 QAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDPVALLAALGARGLTRVFC 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 EGG A S + + LVD +I + + +V+G Sbjct: 299 EGGGQFAASLMAAGLVDELIGFTAGVVLG 327 >gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia R551-3] gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia R551-3] Length = 361 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 176/327 (53%), Gaps = 5/327 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D M+ ALR + T NP V C+I V+G+G G PHAEV AL Sbjct: 4 PFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L Sbjct: 64 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G TVLADDP LT RL + P+R++LD + SL+ ++ Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLR-SLECSRVREG 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + A + ++ D R DL +L +L RG+ + E GA +A Sbjct: 243 -GAPTLYL-HAAAVSAPDAADAEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLA 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 + + VD ++LY++ ++G+ G P Sbjct: 301 GALLRGGWVDELLLYQAPTLLGDNGRP 327 >gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 378 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 127/345 (36%), Positives = 185/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EA Sbjct: 6 AALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 126 ISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E+ +LALA ++ DL++L+ Sbjct: 246 DTPFFQA---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LGARGVNEVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 339 >gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. Langeland] gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. Langeland] gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. 230613] Length = 365 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 181/320 (56%), Gaps = 10/320 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+G Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++ +V +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII- 247 I+VGI TV+ D+P LT R+ G + SP II+D + ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIDTVIKDNPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETFNKRAIYIA 244 Query: 248 -VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ +P A ++ + + L +L+ LV GV S+L+EGG+ + S Sbjct: 245 ATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILYRSQIVIG 321 + +VD ++ + + ++G Sbjct: 305 ALKEGIVDKVMCFIAPKIMG 324 >gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense DCB-2] gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense DCB-2] Length = 365 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 131/331 (39%), Positives = 188/331 (56%), Gaps = 11/331 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +MS AL + +G TS NP V C+IVKDG ++G G G PHAEV AL+ AGE Sbjct: 3 LDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYHQKAGTPHAEVHALQAAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ V G+G+ L GI Sbjct: 63 HARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGIQ 122 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD + E E + +L + K A++ D I S +T S+ VH Sbjct: 123 VDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVTNEASRAYVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR D I+VG TV D+P L CR++ + P+R+I+D ++ L + ++ ++ AP Sbjct: 183 RLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLIVDGTLQIPLQAAVLASSCTAP 240 Query: 245 VIIVTENDDPVLAL-AFRK-KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I T P+ L A R +N+ + D LK LL LV RG S+L+EGG +A Sbjct: 241 CLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGLA 300 Query: 300 HSFINSRLVDSI-ILYRSQIVIGEGGIPSPL 329 S + +L+D + +Y +++ G+G PSPL Sbjct: 301 GSLLREQLIDEVEFIYAPKLIGGKG--PSPL 329 >gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM 16795] gi|164603692|gb|EDQ97157.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM 16795] Length = 370 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 184/338 (54%), Gaps = 20/338 (5%) Query: 5 SFDARF------MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 FD+R+ M AL ++ +G + NP V C+IVKDG VIG G G PHAEV Sbjct: 2 KFDSRYQEDNYYMKKALELAKLGIGAVNPNPLVGCIIVKDGKVIGEGYHMKFGEPHAEVN 61 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A+ A E+ GAT YVTLEPCSH+G++PPCA ++ ++RVV+C +DP+ V+G G++ Sbjct: 62 AINSAKEDIEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIKK 121 Query: 119 LSQKGI-IVDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 L GI + ++E EG ++F H Y+ + + K A+S D I S Sbjct: 122 LQNAGIEVTTGILEEEGLKLNEVFFH-YIKNN---KPLVISKTAISMDGKIATKHMESQW 177 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 I+ + H R + AI+VGI TVL D+P LT R+ + +P+RI++D + K+ ++ Sbjct: 178 ISNESCREMTHEYRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIRIVIDTNLKIPMN 237 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289 S ++ +I ND + L ++K++++ C + DL ++ L + S Sbjct: 238 SNLVNDNKSKTIIFTCNNDLKKINL-LKEKDVDVHICPKKEEGVDLNFVIEKLGELKIDS 296 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +LVEGGA + S + LVD + ++ + +IG PS Sbjct: 297 VLVEGGATLNDSLFRNNLVDKVKIFMAPKIIGGKDAPS 334 >gi|213018626|ref|ZP_03334434.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995577|gb|EEB56217.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 399 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 132/362 (36%), Positives = 188/362 (51%), Gaps = 48/362 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A + A Sbjct: 1 MSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDLTHSA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI V++ + Sbjct: 61 TMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEVEQGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M+ E ++ + T + R I KIA + D I S IT ++N VH LRA+ Sbjct: 121 MQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHELRAK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA ++ Sbjct: 181 YDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYNHDLS 240 Query: 250 ENDDPVLALAF-------RKK-------------------------------------NI 265 + L+++F RKK N Sbjct: 241 KEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYLVVNS 300 Query: 266 NIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 N C LK + + LV G+T LLVEGG + + L+D +I+ RS ++G Sbjct: 301 NNAGKVC--LKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGNDA 358 Query: 325 IP 326 P Sbjct: 359 TP 360 >gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21] gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21] Length = 366 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/327 (38%), Positives = 181/327 (55%), Gaps = 19/327 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V C+IV DG V+G+G G PHAE+ A+++AGE Sbjct: 3 DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ---- 121 + GATAYVTLEPCSHYGR+ PC + +I+ GI++VV DP+ RVSGRG + L + Sbjct: 63 KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122 Query: 122 --KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G++ D+ + +IF+H T R + LK A++ D I S ITG + Sbjct: 123 VVSGVLADKAYR-QNEIFMHYMKT----GRPFVALKYAMTLDGKIATVSGDSKWITGVKA 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR+ DAILVG TV DDP LT RL ++ +P+RIILD L L+ K+ Sbjct: 178 RTYAHRLRSWYDAILVGRETVAQDDPSLTVRL--VEGKNPLRIILDSKASLPLERKVFTD 235 Query: 240 ALLAPVIIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 +++VT AF ++++ R DL LL L + VTS+LVEG Sbjct: 236 GAADTLLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLLQQLAKKDVTSVLVEG 295 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G+ + +F ++ LV+ + + + +IG Sbjct: 296 GSDIHGAFFDAGLVERVYAFIAPSLIG 322 >gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7] Length = 378 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 181/345 (52%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL++L+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339 >gi|119774153|ref|YP_926893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella amazonensis SB2B] gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella amazonensis SB2B] Length = 378 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/344 (36%), Positives = 194/344 (56%), Gaps = 33/344 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 S+ D M+ A+ ++ T NP+V C+IV D G ++G G G PHAEV AL+ Sbjct: 8 SALDRAMMARAIMLAKRGQYTTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALKA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++ARGATAYVTLEPCSHYGR+PPCA+ +I+ G++RVVV + DP+ +V+GRG++ L Sbjct: 68 AADKARGATAYVTLEPCSHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQDA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME+E + +L+R KR +T+K+ S D ++ S ITG ++ Sbjct: 128 GIEVAHGLMEAEARALNPGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEARR 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231 V LRA+S A++ GI TVL DDP L R L + P+R++LD ++S Sbjct: 188 DVQRLRAKSCALITGIDTVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRMS 247 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII--YCDCR---------DLKKLLT 280 D+K+ + P+++V+ A + +K ++ + + C DL LL+ Sbjct: 248 TDAKLF--GITGPILLVS-------AEPYDEKFLHSLPDFVTCLILPGSHGRIDLAALLS 298 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L G +LVE G +A +FI + L D ++LY++ ++G G Sbjct: 299 HL-GENCNRVLVEAGGTLAGAFIAAGLCDELVLYQAPKLLGSHG 341 >gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC341] gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC341] Length = 367 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 184/339 (54%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPPSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A ++ I + + DL++LLT L + Sbjct: 241 HQLY------------PELALYQTPSPVLRVASENADLRISAENGKLDLRELLTQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQQLVDEIILYLAPKLMGSDG 327 >gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM 1131] gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM 1131] Length = 371 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 124/328 (37%), Positives = 180/328 (54%), Gaps = 15/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 5 DNMYMARAFELARKGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRMAGDK 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ GI Sbjct: 65 AQGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQAGIET 124 Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++ + +L R +I LK+A S D + S IT ++ V Sbjct: 125 RSNVLLNDAEAANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARKDVQA 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDS 234 LRA++ AIL TV+ADDP LT R N L Q P+RI+LD H +++ Sbjct: 185 LRAEASAILSTSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRVTSGH 244 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVE 293 K+ T L +V N D + + + + + DL L+ L R V S+ VE Sbjct: 245 KV--TQLDGECWLVRSNPDENAVWQGQVEQLAVPADENGTDLVILMMQLAKRNVNSIWVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A S + LVD +I+Y + ++G Sbjct: 303 AGAKLAGSLLKLGLVDELIVYIAPKLLG 330 >gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185] gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185] Length = 379 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I V Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + L+ Y ++ KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEADAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium atrosepticum SCRI1043] gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum SCRI1043] Length = 369 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 183/334 (54%), Gaps = 22/334 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 4 DELYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGITV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L Q+H P+R+I+D +++ Sbjct: 184 FRAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +II + V ++ V L + N + DL L+ +L R + S+ Sbjct: 244 RIISQPGETWLARVQADEQAWPQNVEHLMLPQHNGGV------DLVALMMVLGRRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA++A + +N+ +VD +I+Y + ++GE Sbjct: 298 WVEAGASLAGALLNACVVDELIVYLAPKLLGENA 331 >gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae 6P18H1] gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae 6P18H1] Length = 372 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GA AYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGAIAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L T++ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ ++P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 4222] gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 4222] Length = 379 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] Length = 370 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEETRIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + ++ Y S +IG P+ Sbjct: 302 KTNNFNEVVTYISPKLIGGKDAPT 325 >gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253] Length = 367 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 195/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V +L + N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRSLLIPEHNGHL------DLVLLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ +F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPHFKFNEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 360 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 186/330 (56%), Gaps = 15/330 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ +G Sbjct: 4 YMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDVKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 64 STMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME + + ++ K + +K A+S D I S IT S+ H +R Sbjct: 124 IMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRG 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VG+ TV+ D+P LT RL G + SP+RII+D ++ DS +I+ +I Sbjct: 184 RVSAIMVGVNTVIKDNPMLTTRLEGYK--SPVRIIVDSRGRIPFDSNVIRDKTAKTIIAT 241 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 TE ++ RKK +I +I + LK+L+ L RG+ S+L+EGG + Sbjct: 242 TE----LMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNW 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 S + +VD ++ + S +IG +P+E Sbjct: 298 SALKEGIVDKVMFFISPRIIGGKNALTPVE 327 >gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aesculi str. 2250] Length = 378 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L ++ P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL+KL+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 295 LATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 339 >gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 369 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 117/325 (36%), Positives = 184/325 (56%), Gaps = 10/325 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI V Sbjct: 66 AKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E K + K ++ LK ++ D I S IT I++ +V Sbjct: 126 ELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + ++ K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 IIVT ND+ L + KN+ I+ ++ +L L G+ S+L+EGG+ Sbjct: 245 DGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGGSG 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE 322 + + +VD+ ++ + +IG+ Sbjct: 305 LISTAFKENIVDAGEIFIAPKIIGD 329 >gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Haemophilus influenzae 10810] Length = 372 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEKIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333 >gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC 2916] gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC 2916] Length = 365 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 121/361 (33%), Positives = 196/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ ++ G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+G Sbjct: 7 YMEKALKLAKRGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII- 247 I+VGIGT++ D+P LT R+ + SP II+D ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244 Query: 248 -VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ P ++ + + L +L+ L GV S+L+EGG+ + S Sbjct: 245 ATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD ++ + S+ +IG G+ S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842] gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842] Length = 370 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325 >gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 360 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 189/350 (54%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ A E+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAEEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR + +K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVAIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+R+ILD ++ +++K+I I Sbjct: 181 NAAILVGANTVQEDNPSLTTRIPNG---RNPIRVILDSTLRIPMEAKVITDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 KLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFKDISFTQVGKDY 347 >gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876] gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876] Length = 379 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 179/324 (55%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGIGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEQARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILIGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881] gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881] Length = 387 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 186/351 (52%), Gaps = 29/351 (8%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D +FMS AL+ +R + T NP V C++V+ G V+G G A G HAE AL Sbjct: 1 MSFSAADHQFMSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ A+GATAYVTLEPCSH GR+ PCA ++E G+ RVV ++DP+ +V+G+GLQ L+ Sbjct: 61 AAAGDRAQGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLA 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++E++ + ++ R +R +I +KIA S D MA S ITG + Sbjct: 121 DAGIAVASGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ---------EHS---------PMR 221 + V LRA+S A++ G+GTVLAD P T R EH+ P+R Sbjct: 181 REDVQRLRARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLR 240 Query: 222 IILDPHFKLSLDSKIIKTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR----DL 275 +ILD + D ++ AP ++V P A +++ DL Sbjct: 241 VILDRTLRTPPDVPVVS----APGHCLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDL 296 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 ++LL L R +LVE GA +A +F+ L D I++Y + ++G P Sbjct: 297 QQLLIELNRRECNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARP 347 >gi|166710620|ref|ZP_02241827.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 369 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 128/360 (35%), Positives = 193/360 (53%), Gaps = 12/360 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP +T RL + P+R++LD + +L K I+ Sbjct: 188 DVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLR-TLACKNIRNG 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + + + AL ++ DL +L +L R + + VE GA ++ Sbjct: 247 -DAPTLYLHGDAVAATALDGAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSG 305 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRD--YFGSDVCLEY 354 + + + LVD +++Y + +++G+ PL G + + + RD G D+ L Y Sbjct: 306 ALLQAGLVDELLVYMAPVLLGD--TARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLHY 363 >gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinobacter sp. ELB17] gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinobacter sp. ELB17] Length = 371 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/363 (35%), Positives = 190/363 (52%), Gaps = 17/363 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D FM+ A++ + T NP V C+I + ++G G HAEV+AL + Sbjct: 2 ITTRDRAFMARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG+TAYVTLEPCSH+GR+PPCA+ +IE G+ RV DP+ VSGRGL+ L Sbjct: 62 AGTSARGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++ E ++ R R + LK+A S D MA S ITG S++ Sbjct: 122 GIRVHVGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRS 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V LRA SDAIL G+GTVLADDP LT R + + P+R+I D + Sbjct: 182 DVQRLRAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPAS 241 Query: 234 SKIIKTALL----APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 +KI + + A + T + AL R + + + ++ ++L L G+ Sbjct: 242 AKIFRGGKVQVFCATASLATSAAQDLAALGIRLRGV-AWHDKGVNVAEMLDTLGDIGINE 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346 +LVE G +A SFI+ LVD + LY++ + +G G P+ PLE + + + R Sbjct: 301 VLVEAGPTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQL 360 Query: 347 GSD 349 G+D Sbjct: 361 GAD 363 >gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Serratia symbiotica str. Tucson] gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Serratia symbiotica str. Tucson] Length = 371 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 183/336 (54%), Gaps = 26/336 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A + +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DVFYMARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+AVS D MA S IT ++ V Sbjct: 124 CHGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L QE+ P RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPALTVRWDELDAETQSLYPQENLRQPWRIILDSQNRVTPQH 243 Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++++ A L P D V L F + DL ++ L R V Sbjct: 244 RVVQQPGATWLARLQPDKQAWPQD--VEQLIFPAHGGGV------DLVVMMMHLAKRQVN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE GA ++ + + + LVD ++LY + ++G+ G Sbjct: 296 SIWVEAGAQLSGALLQAVLVDELVLYLAPKLLGDDG 331 >gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica T6c] gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas atlantica T6c] Length = 372 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 190/338 (56%), Gaps = 24/338 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S+ DA+ M+ A+R + TS NP+V C+I G ++G+G G PHAE+ A+ + Sbjct: 5 SALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIHAIAQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE +GATAYVTLEPC+H+GR+ PC++ +++ G++RVV + DP+ V+G GLQ LS Sbjct: 65 AGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQKLSDA 124 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V ++ESE K ++ R + +T+K+A S D + S ITG +++ Sbjct: 125 GVQVSSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGPLARE 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQE---HSPMRIILDPHFKLS 231 V RAQS AIL G GTVLAD+P L R N L E P+R++LD ++ Sbjct: 185 DVQRHRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGRNQMR 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVGRG 286 D + AL +P++I+ N P A + + N D +D+ K L RG Sbjct: 245 PDLHLF--ALSSPIVII--NSQPNTAEFPDHVEQYQAQSNGAQLDLQDVMKHLG---QRG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + VE GA +A + + ++L+D +ILY++ ++G+ G Sbjct: 298 FNHIWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKG 335 >gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 379 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 182/325 (56%), Gaps = 6/325 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEETCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+AD+P LT R+ NG Q +P+R+ILD + + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGQ--NPIRVILDTNLRTPPSSHVITDSLAPT 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF Sbjct: 250 WIMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASF 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + ++ + II Y S +IG P+ Sbjct: 310 LQTKYFNEIITYISPKLIGGSKAPT 334 >gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185] gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W] gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W] gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185] gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 350 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 123/342 (35%), Positives = 187/342 (54%), Gaps = 14/342 (4%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+R+ILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKN 358 +IG PS ++E + +D D+ IGK+ Sbjct: 300 KIIGGRLAPS-----FVEGTGITKMKDAIEFKDISFTQIGKD 336 >gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacillus flagellatus KT] gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacillus flagellatus KT] Length = 377 Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/329 (40%), Positives = 182/329 (55%), Gaps = 12/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +M+ ALR + + TS NP V C+IVKDG V+GRG G PHAEV AL A Sbjct: 13 SASDHHYMNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALRMA 72 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A GA AYVTLEPCSH+GR+PPCA +++ G+RRVV + DP+ VSG GL+ LS G Sbjct: 73 GGQAAGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLSTHG 132 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E E + +++R +R + KIA S D G+ S ITG ++ Sbjct: 133 IEVAYGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSARQH 192 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEH--SPMRIILDPHFKLSLDSKIIK 238 V RAQS AIL G+GTVLADDP LT R L Q H P R+I+D + + ++ Sbjct: 193 VQQWRAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAATLQ 252 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 V+I PV A R +I DL+ LL L R + ++VE Sbjct: 253 AGR---VLIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVEA 309 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GA + S + LVD ++LY + +++G G Sbjct: 310 GARLNGSLLYGGLVDELLLYYAPVLLGGG 338 >gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG] gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG] Length = 372 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia bercovieri ATCC 43970] gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia bercovieri ATCC 43970] Length = 369 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 179/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L + P+RIILD H +++ Sbjct: 184 FRAESAAILSTSATVLADDPSLTVRWDELDSETQGWYPQARLRQPIRIILDSHNRVTPHH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D L A ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + +VD +ILY + ++G Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b] gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b] Length = 370 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/334 (37%), Positives = 180/334 (53%), Gaps = 26/334 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 2 IDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M + + +L R I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233 RAQS AIL TVLAD+P LT R N L Q P+R+++D +++ Sbjct: 182 RFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQ 241 Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++I +T L+ AP V +A+ R+ + DL ++ +L R + Sbjct: 242 HRLIDQPGETWLMRSAPDQHVWPESVTQIAVPQRESQL--------DLVAMMMLLGQRQI 293 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 S+ VE GA +A + + + LVD +I+Y + ++G Sbjct: 294 NSVWVEAGAKLAGALLQAGLVDELIVYLAPKLLG 327 >gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC 33394] gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC 33394] Length = 369 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 14/343 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S DA M A+ + TS NP V C+I G ++G+G G PHAEV AL +A Sbjct: 9 SELDAAHMRRAIELAWLGRFSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALRQA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV+ + DP+ V+G+G+ L G Sbjct: 69 GDLARGATAYVTLEPCSHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQAAG 128 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ E + +L+R +R ++LKIA S D G++ S ITG ++ Sbjct: 129 ISVQCGLLADEARALNRGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V RAQS A+L G+GTVL D+P L R + P+R+ILD + S +I+ Sbjct: 189 VQRQRAQSCAVLTGVGTVLHDNPRLNVRQFPIVRQ-PLRVILDSRLRTPESSHMIQDG-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGAA 297 I T P L A+ N+++ C D R L +L L G+ L+VE G Sbjct: 246 QATQIFTLQKQPALFAAY--PNVSVRQCAANADGRIALPDVLARLAEDGIGELMVEAGCT 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKN 337 + +F+ L D I+ Y+S ++G + P L++N Sbjct: 304 LNSAFLQQNLADEIVYYQSAKILGSNAQAAFSLPENPAVLQQN 346 >gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1] gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1] Length = 367 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431] Length = 367 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I+ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|51246637|ref|YP_066521.1| riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila LSv54] gi|50877674|emb|CAG37514.1| probable riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila LSv54] Length = 401 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/358 (36%), Positives = 190/358 (53%), Gaps = 10/358 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL +R G TS NP V +IV DG V+GRG G PHAEV AL +AGE Sbjct: 38 LDQKYMLLALAEARRGQGRTSPNPCVGAIIVGDGSVVGRGYHKKAGTPHAEVHALRDAGE 97 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A GATAYVTLEPCSH GR+PPC + + G+ RVVV + DP+ V+GRG+Q+L GI Sbjct: 98 KAAGATAYVTLEPCSHTGRTPPCCVALAKAGVLRVVVGMTDPNPLVNGRGVQYLRDHGIE 157 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E++ + ++ + + +K +S D + ITG S VH Sbjct: 158 VSTGICEADCREINRPFIKKITTGTPWMIMKAGISLDGRMNYKEGEPGWITGPESGALVH 217 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DAI+VG GTV+ D+P LT RL G P+ +ILD K D+ + A Sbjct: 218 QLRDSVDAIMVGSGTVMIDNPSLTTRLPGGGGRDPVAVILDSQLKTDPDAHVYSAASGRS 277 Query: 245 VIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V++ ++D D F ++ + ++ + DL +++ +L R + S+LVEGGA + Sbjct: 278 VLVFCQHDVDEGRKEVFAERGVIVLPVSSLPEGLDLGEIVAVLGERDICSVLVEGGAQLH 337 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + RL D + L+++ + G+GG+ PL VRR G+ + LE Sbjct: 338 GQLLQKRLYDYLYLFQAPLFAGDGGVSLVTGCPLAGREDAIALRGVRRSVLGAHLLLE 395 >gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM 2522] gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM 2522] Length = 362 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/324 (38%), Positives = 182/324 (56%), Gaps = 14/324 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M A+ ++ G T+ NP V +IV + ++G G G HAE A+E A + Sbjct: 1 MDNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNNQIVGFGAHLKAGEHHAEKHAIEMAKD 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GAT YVTLEPCSHYGR+PPCA +IE GI++V++ DP+ +VSGRG++ L GI Sbjct: 61 KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120 Query: 126 VDR--MMESEGK---IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V+ M E K +F H T K+ +TLK A S D I S IT S+ Sbjct: 121 VEVGCMKEETDKLNDVFFHFVNT----KKPFVTLKSATSLDGKIATRTGESQWITSEESR 176 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR ++DAILVGI TV+ DDP LT RL +G + +P+R+ILD ++ + +K+I Sbjct: 177 KDVHQLRHKNDAILVGINTVIKDDPALTTRLPDGGK--NPIRVILDRELRIPMTAKLIND 234 Query: 240 ALLAPVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +I T N + + L + + I+ D ++ LL +L +TSLLVEGG Sbjct: 235 HASLTWVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYLLGEHNITSLLVEGGGT 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 V SF+ S +I+Y + ++IG Sbjct: 295 VNDSFLKSGEFQQVIVYIAPLLIG 318 >gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Lactococcus lactis subsp. lactis CV56] Length = 362 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 198/362 (54%), Gaps = 22/362 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 GA YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI Sbjct: 64 PEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++++ E KIF + Y+++ + ++ +K A++ D I + S ITG I++ Sbjct: 124 SLNVLEKECEELNKIFFY-YVSQGL---PYVMMKYAMTLDGKIATSAGQSKWITGEIARQ 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH R++ AI++G+ T++ DDP+L+ RL NG +P+RII D H + L SKI+ TA Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 P II T DP F K II C + LK+L L +G+ S+++EGG Sbjct: 237 TEIPTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVC 351 + S + + +V + Y + + G PSP+E +E+ + Y G D+ Sbjct: 297 TLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDIL 356 Query: 352 LE 353 LE Sbjct: 357 LE 358 >gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Haemophilus parainfluenzae T3T1] Length = 376 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL +A Sbjct: 6 SPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALADA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+ G Sbjct: 66 GEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLADAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + ++ LK+A+S D MA S ITG ++ Sbjct: 126 IPSAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V +RA++ A+L TVLADDP L R N + P+RIILD ++ Sbjct: 186 VQKMRAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNRVQ 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 ++ T +PV +V P F I+ + D L+T L R V S+ Sbjct: 246 PSHQLFHTH--SPVWLV--GSIPRDMSVFPDFCEQILLPENYDFDLLMTELGKRQVNSVW 301 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I VD +I+Y + ++G+ Sbjct: 302 VEAGANLAGSLIEQHAVDELIIYVAPKLLGDNA 334 >gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis KBAB4] gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis KBAB4] Length = 370 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATITGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 183 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPT 325 >gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196] gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196] Length = 379 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 177/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRKLEEVGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIAPYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334 >gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 371 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 191/363 (52%), Gaps = 22/363 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL +R G TS NP V ++V G V+G+G G PHAEV AL AG+ Sbjct: 4 DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGRVVGQGAHLMAGTPHAEVHALRMAGDA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L + GI V Sbjct: 64 AQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGIEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + R R ++ K+A++ + + S +TG ++ VH Sbjct: 124 TVGVLEAEARELNRHFFHRVTTGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHW 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR AI VG+GTVL DDPELT R ++ P+R++ D + +++ L Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDRQPLRVVFDTRLRTPPTARL----LA 239 Query: 243 AP---VIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 AP +++ +E P + ++ I R DL L+ + G +LLVE Sbjct: 240 APGRTLLLTSERMASAPAARRLAEQGDVRIAPVAERDGHLDLHAALSAIAAEGANALLVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEK-NFMCVRRDYFGSD 349 GG +A + + SRL+D I +Y + ++ GG+P+ +G E VR D+ G D Sbjct: 300 GGPTLASALLKSRLIDEIRVYLAPKLLA-GGLPAFAGAFTQGMAEAVELHGVRSDWVGDD 358 Query: 350 VCL 352 + + Sbjct: 359 LVV 361 >gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W] gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W] Length = 379 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp. 30_2] gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp. 30_2] Length = 367 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/369 (36%), Positives = 193/369 (52%), Gaps = 32/369 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP+LT R + L E + P+RI+LD +++ Sbjct: 183 LRAQSHAILTSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +I++ IV DDP V +L + N ++ DL L+ L + + Sbjct: 243 RIVQQP--GETWIVRTEDDPRSWPETVRSLKVPEHNGHL------DLVVLMMQLGKQQIN 294 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343 S+ VE G +A + + + LVD +I+Y + ++G +P LE+ +F Sbjct: 295 SIWVEAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPG-LEKLADAPHFKFNEI 353 Query: 344 DYFGSDVCL 352 G DVCL Sbjct: 354 RQVGPDVCL 362 >gi|332558836|ref|ZP_08413158.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N] gi|332276548|gb|EGJ21863.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N] Length = 356 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/320 (40%), Positives = 189/320 (59%), Gaps = 7/320 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI V +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAVGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E ++ +L R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARVAHAGFLKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ C D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGG 324 + L D ++ + + +IGE G Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319 >gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Faecalibacterium prausnitzii L2-6] Length = 374 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 200/375 (53%), Gaps = 28/375 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++ K+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I+ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGIDV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + +++ E K+F H Y+T KR +++K A++ D I S ITG I++N Sbjct: 123 TENVLQEECDALNKVFFH-YIT---TKRPFVSMKYAMTMDGKIATYTGASKWITGEIARN 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + I+VG+GT+LADDP LTCR+ G ++ P+RII D H + L S+++ TA Sbjct: 179 HVQRQRHRFRGIMVGVGTILADDPLLTCRIEGGRD--PVRIICDTHLRTPLQSQVVMTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 P I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG Sbjct: 237 QVPTILATCCGDPEKQAAYQQDGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCVRRDYFGS 348 + S + S +V + Y + + G EG G+P P + + KN R + G Sbjct: 297 LNWSALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLP-DAAFRLKN---SRLEQLGK 352 Query: 349 DVCLEYIGKNLCLQE 363 D +E + CL E Sbjct: 353 DFLIESEVEYPCLPE 367 >gi|254486598|ref|ZP_05099803.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101] gi|214043467|gb|EEB84105.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101] Length = 356 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/334 (39%), Positives = 186/334 (55%), Gaps = 9/334 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C+IV+ ++GRG T GG PHAE +AL +AG +A GA Sbjct: 1 MALALSLGRRGQGTVWPNPAVGCVIVQGDRIVGRGWTQPGGRPHAEPEALAQAGAQAVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPC+H G++PPCAQ +I+ + RVV+ D D RVSG+G+ L GI VD + Sbjct: 61 TVYVTLEPCAHTGKTPPCAQALIDAQVARVVIACADSDPRVSGKGIAMLQAAGIAVDTGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + +L+R R +TLK+A S D I A S IT ++ VH +RA+ Sbjct: 121 LEDEARKDHIGFLSRIDIARPMVTLKLASSFDGRIATATGESQWITAGPARRLVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT DDP LT R G+ P RI++ L L K+ +TA L PVI+ Sbjct: 181 HDAVMVGGGTARQDDPSLTVRDIGITRQ-PARIVVSSRLDLPLSGKLAQTAALIPVILCH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + DP L +++ +I C R D +L L G+T + EGG +A S + Sbjct: 240 ATSADPHLVTTWQQLGATLIPCATRAGQLDPADILRKLADHGLTRIFCEGGGGLAASLLQ 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK 336 + LVD ++ + + + IG G+P+ PL L K Sbjct: 300 ADLVDHLVGFTAGLAIGADGLPAIGPLGLSQLGK 333 >gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli ATCC 8739] gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638] gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1] gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli B str. REL606] gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1] gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70] gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739] gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638] gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1] gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli BL21(DE3)] gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli B str. REL606] gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BL21(DE3)] gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1] gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70] gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489] gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007] Length = 367 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 190/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ T+ D R I + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WFARTQEDSREWPETVRTLLIP-AHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|323138569|ref|ZP_08073637.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242] gi|322396203|gb|EFX98736.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242] Length = 376 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 146/368 (39%), Positives = 201/368 (54%), Gaps = 16/368 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P + D FM+AAL R ++G T+ NP+V L+V+DGI+I RG TA GG PHAE AL Sbjct: 7 IPYVATDEAFMAAALALGRRNMGRTAPNPAVGALVVRDGIIIARGWTAKGGRPHAEAIAL 66 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGAT YVTLEPCSH+G +PPC II GI RVV ++DPD RV+GRG Q L Sbjct: 67 AAAGEAARGATLYVTLEPCSHHGSTPPCVDAIIASGIARVVTAMEDPDPRVAGRGHQILR 126 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITG 176 GI V E+ H ++ R + R +TLK+A + D AG P ITG Sbjct: 127 DAGIDVFIGPEAAAARADHLGHILRVTKHRPMVTLKLAQTPDGY--AAGAAHDPRLRITG 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 I+ H+ RA DAI+VG GT DDP +T RL GL+ +P+R++LD LS S++ Sbjct: 185 PIADAFTHVHRALHDAIMVGAGTAREDDPLMTVRLPGLEGVTPLRVVLDEKLALSPRSRV 244 Query: 237 IKTALLAPVIIVTENDDPVLAL-----AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSL 290 T+ P++++T D P + A + + + +Y DL L +L RG+T + Sbjct: 245 ASTSRETPLLVITALDVPDADVHRFMDATGAEVVKVPMYEGKLDLLAALRLLAERGITRV 304 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYF 346 EGG VA S + + L D +IL+ +G G P +P LE + + Sbjct: 305 FSEGGPRVAESLLTAGLADEVILHMGVKPLGRPGQPALTPKARTALENVSRYRLIESRML 364 Query: 347 GSDVCLEY 354 G+D Y Sbjct: 365 GADQMTRY 372 >gi|304312168|ref|YP_003811766.1| Riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [gamma proteobacterium HdN1] gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [gamma proteobacterium HdN1] Length = 389 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 185/347 (53%), Gaps = 20/347 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++FD + MS AL+ + + T NP V C+IV++G ++G G G HAEV ALE+A Sbjct: 7 NAFDHQMMSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEVLALEQA 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+HYGR+PPCA +I+ GI RVV + DP+ RVSG G L G Sbjct: 67 GERAKGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYGLLRAAG 126 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I D +++ + + ++ R + +K +SQD MA S IT ++ Sbjct: 127 IKTDNGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITSSPARAD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-------------LNGLQEHSPMRIILDPHFK 229 V LRA+S+A++ G+ TVL+DDP LT R +G P+R+ILD + Sbjct: 187 VQRLRARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVILDSQLR 246 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285 +++++ + +P A R I R DL +L L + Sbjct: 247 TPTSARLLREP--GQNVFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVLQWLAAQ 304 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 V +L+E GA+VA SFI + LVD ++Y++ ++G P+ + EG Sbjct: 305 EVNEVLIEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEG 351 >gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str. Okra] gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str. Okra] Length = 365 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 182/324 (56%), Gaps = 11/324 (3%) Query: 7 DARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D F M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE Sbjct: 3 DYNFHMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI Sbjct: 63 KAKGATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +ME E K ++ +K+ + LK A + D I S ITG ++ +V Sbjct: 123 VVTGIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQ 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R I+VGI TV+ D+P LT R+ G + SP II+D + ++ L+SKI++T Sbjct: 183 QIRNDLSGIMVGIDTVIKDNPLLTTRIEGGR--SPKAIIVDSNLRIPLESKILETFNKRA 240 Query: 245 VII--VTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAA 297 + I ++ +P A ++ + + L +L+ LV GV S+L+EGG+ Sbjct: 241 IYIAATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGST 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 + S + +VD ++ + + ++G Sbjct: 301 LNFSALKEGIVDKVMCFIAPKIMG 324 >gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1] gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1] Length = 365 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 123/329 (37%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D FM ALR + GLT NP+V +IVKDG +IG+G G PHAE +A+ +A Sbjct: 6 DEIFMKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKK 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G G+T YVTLEPC HYGR+PPC + II+ I+RVV+ DP+ +VSG+G++ L + G Sbjct: 66 GFNLEGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +++ E + + EKR I LKIA S D I S IT S+ Sbjct: 126 IETVVGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRY 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR +S AI+VG TVL D+P LT R E P+R++LD K+ D + Sbjct: 186 VHKLRRESTAIMVGTNTVLKDNPNLTVRYTE-TERQPLRVVLDKDLKIPEDYNVFNNE-A 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 V+ ++ D K + I+ + DL +L L V L +EGG + Sbjct: 244 KTVLFTSDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 F+ +L D I ++ + +IGE GI S Sbjct: 304 ITQFLKEKLFDRISVFIAPKIIGEDGISS 332 >gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622] gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622] Length = 387 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 189/362 (52%), Gaps = 13/362 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + +G TS NP V ++VK G +I RG G HAEV ALE AG A+G Sbjct: 31 FMRIALEEAAKGLGRTSPNPVVGAVLVKGGRIIARGYHKKAGSAHAEVVALEAAGARAKG 90 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A Y TLEPC HYGR+PPC+ IIE G+RRV+ DP+ +VSG+G+ + + G+ V Sbjct: 91 ADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMRRAGLKVLTG 150 Query: 130 MESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + +E L+ + + +TLK AV+ D + A S +TG ++ VH LR Sbjct: 151 VLAEDADRLNRPFFKMIRTGLPWVTLKAAVTLDGKLATATGDSRWVTGAPARAWVHRLRD 210 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 D ILVG TV DDP+LT RL G P+R+++D H +LS I A ++ Sbjct: 211 SVDVILVGANTVRKDDPKLTTRLPGGGGKDPLRVVVDSHLRLSPGYTIFTQRSAARTVVA 270 Query: 249 T-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T E+ + A F + +++ + DLK LL L G ++VEGGA + SF+ Sbjct: 271 TLEDPEGRKARRFLAQGVDVWQLREKAGQVDLKALLRRLAKGGHNHVMVEGGAEMYGSFL 330 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 RL DS+ L+ + +IG G+ + G E + V+ D+ E G ++ LQ Sbjct: 331 RGRLADSLALFLAPKLIGSPGLSWAGDLGVKEMAQALAVK------DLAFERHGDDILLQ 384 Query: 363 EL 364 L Sbjct: 385 AL 386 >gi|220925141|ref|YP_002500443.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS 2060] gi|219949748|gb|ACL60140.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS 2060] Length = 388 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/335 (40%), Positives = 189/335 (56%), Gaps = 12/335 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQA 59 S+ D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE A Sbjct: 9 SALDRRYMRLALALGRRHLGETWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERIA 68 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE ARGAT YVTLEPCSH+GR+ PCA ++E GI RVV + DPD RV+GRG L Sbjct: 69 LAAAGEAARGATLYVTLEPCSHHGRTSPCADAVVEAGIARVVSAMADPDPRVAGRGHGRL 128 Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 S GI V + H ++TR R I LK+A + D G G + ITG + Sbjct: 129 SAAGIAVTVGTLGQEAARDHLGHVTRVTAGRPAIDLKLARTPDG-FAAGGTGRLIITGPL 187 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + ++HL+RA SDAI+VG+ TVLADDPELT RL GL + SP+R++LDP + S++++ Sbjct: 188 ANARIHLMRAHSDAIMVGVETVLADDPELTVRLPGLGDRSPVRVVLDPALRTPPQSRLLR 247 Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINI----IYCDCR-DLKKLLTILVGRGVTSLLV 292 T+ P +I+ P A A R ++ + D R L+ L L RG T + Sbjct: 248 TSDRVPTLILCGPAAPPEAERAIRAAGADVARMPVDPDGRLQLRAALHGLGERGFTRVFC 307 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 EGG +A++ L+D+ ++ + G+P+ Sbjct: 308 EGGPTLANALARHGLIDTCLIVTGARPLDRAGLPA 342 >gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 350 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 184/338 (54%), Gaps = 18/338 (5%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG+Q L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+RIILD ++ +++ I+ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANIVTDGEAPTWIFTTSNHAGEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +IG PS +E + K +F V +DY Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 337 >gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC 29220] gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC 29220] Length = 367 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 194/372 (52%), Gaps = 32/372 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP+LT R L E + P+RI+LD H +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +I++ IV DD V ++ + N ++ DL L+ L + + Sbjct: 243 RIVQQP--GETWIVRTQDDTRHWPESVRSIKVPEHNGHL------DLVVLMMQLGKQQIN 294 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343 S+ VE G +A + + + LVD +I+Y + ++G +P LE+ +F Sbjct: 295 SIWVEAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPG-LEKLADAPHFKFNEI 353 Query: 344 DYFGSDVCLEYI 355 G DVCL I Sbjct: 354 RQVGPDVCLHLI 365 >gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TV+ADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6] gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6] Length = 378 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/345 (35%), Positives = 179/345 (51%), Gaps = 22/345 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 11 LDAHYMARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALRAAGD 70 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI Sbjct: 71 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIE 130 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++E E + +L R + +K+A+S D MA S ITG ++ V Sbjct: 131 VRSGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQ 190 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234 LRA++ +L G TVLAD LT R L P+R+++D ++ L++ Sbjct: 191 RLRAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNA 250 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291 K + VT + F + ++ DL+ L L RGV +L Sbjct: 251 PFFKAGPALVITCVTAQNQ------FPRGPECLVVPGVEGQVDLRSALVALAARGVNEVL 304 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 VE G ++A +F LVD +++ + +G PL + LEK Sbjct: 305 VEAGPSLAGAFAQQGLVDEYVIFVAGKFLGCAA--RPLLDWPLEK 347 >gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. MG1655] gi|89107284|ref|AP_001064.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. W3110] gi|170080000|ref|YP_001729320.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. DH10B] gi|238899702|ref|YP_002925498.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BW2952] gi|256023969|ref|ZP_05437834.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia sp. 4_1_40B] gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1] gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1] gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1] gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1] gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736] gi|140252|sp|P25539|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12] gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli] gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. MG1655] gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli] gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K12 substr. W3110] gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. DH10B] gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BW2952] gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1] gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1] gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1] gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1] gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1] gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407] gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli DH1] gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520] gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482] gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis Il1403] gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis Il1403] Length = 362 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 197/362 (54%), Gaps = 22/362 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLANKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 GAT YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI Sbjct: 64 PEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++++ E KIF + Y+++ + ++ +K ++ D I + S ITG I++ Sbjct: 124 SLNVLEKECEELNKIFFY-YVSQGL---PYVMMKYVMTLDGKIATSAGQSKWITGEIARQ 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH R++ AI++G+ T++ DDP+L+ RL NG +P+RII D H + L SKI+ TA Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 P II T DP F K II C + LK+L L +G+ S+++EGG Sbjct: 237 TEIPTIIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVC 351 + S + + +V + Y + + G PSP+E +E+ + Y G D+ Sbjct: 297 TLNASALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDIL 356 Query: 352 LE 353 LE Sbjct: 357 LE 358 >gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis L2TR] gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis L2TR] Length = 375 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 180/331 (54%), Gaps = 16/331 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD + M AL +R + T NP+V C+I V+G G G PHAEV AL AG+ Sbjct: 9 FDHQMMHRALMLARRGLMTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHALRAAGQ 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + RGATAYVTLEPCSH GR+PPC +IE G++RVVV + DP+ RVSG G+Q L GI Sbjct: 69 KVRGATAYVTLEPCSHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGIS 128 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD +++ + +++R +R +TLK+A S D ++ S IT S++ V Sbjct: 129 VDVGVLQLAAESLNPGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQ 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM--------RIILDPHFKLSLDSKI 236 RAQ+DAIL G T+LADDP+LT R++ + P+ RII+D +++ ++++ Sbjct: 189 FFRAQADAILSGAATILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARV 248 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVE 293 + APV +V P + II D L L+ L R + L E Sbjct: 249 FDSP--APVWLVRTT--PGKPSCHPHCHELIIAADPNGKVSLPALMVELANREINQLWTE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A + I +L D +++Y S ++G G Sbjct: 305 CGANLAGALIQQQLCDRLMIYSSGQLLGHHG 335 >gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis MPA1U2] gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis MPA1U2] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 187/326 (57%), Gaps = 8/326 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL ++ G T NP V +IV D ++G G G PHAE+ AL AG+ ++G Sbjct: 7 YMNLALTNAQTLKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGDMSQG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YVTLEPCSH+GR+ PCAQ II+ GI +VV+ DP+ V+G G++ L + GI V Sbjct: 67 ATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEAGIEVIVG 126 Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E I ++ + V K +TLK A + D I S IT ++ VHL+R+ Sbjct: 127 VREEEAIKMNEVFNKFIVTKTPFVTLKAASTLDGKIATHSLDSKWITAEEARLDVHLMRS 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q AILVG+GTV+ DDPELT R+ NG +P+RI+LD ++ LDSK++ ++ I Sbjct: 187 QHMAILVGVGTVIEDDPELTARISNG---RNPIRIVLDSTLRIPLDSKLVTDGIVDTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYC--DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++N D A + + I D + D+ ++ L +G++SL +EGG + +F+ Sbjct: 244 TSQNYDAEKRQALEELGVLIFETSHDTQVDVIDVVRTLGEKGISSLFIEGGGTINAAFLE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLE 330 + L+D ++ Y + ++G P+ +E Sbjct: 304 NDLIDKVVFYFAPKLVGGKLAPTFIE 329 >gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582] gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582] Length = 370 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 181/336 (53%), Gaps = 26/336 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 4 DELYMARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMAGKR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP LT R + L + P+RIILD H +++ Sbjct: 184 LRAESAAILSTSATVLADDPSLTVRWDELDAETQRSYPRENLRQPLRIILDGHNRVTPQH 243 Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 K+I+ A L P + + V L F I DL ++ L R V Sbjct: 244 KLIQQPGTTWLARLQPDQGLWPQN--VEQLQFPAHGGGI------DLVVMMMQLAKRQVN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE GA ++ + + + LVD +ILY + ++G+ G Sbjct: 296 SIWVEAGARLSGALLQAGLVDELILYIAPKLLGDNG 331 >gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28] gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28] Length = 360 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 187/350 (53%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENANAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+R+ILD ++ + + ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMKANVVTDEEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 ELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 347 >gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 3502] gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 19397] gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. Hall] gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium botulinum A str. ATCC 3502] gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 19397] gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. Hall] Length = 365 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/361 (32%), Positives = 194/361 (53%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G + NP V ++V + +IG G Y G PHAEV AL+EAGE+A+G Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVNNNKIIGEGYHKYFGGPHAEVYALKEAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI ++ Sbjct: 67 ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVITG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGIGT++ D+P L R+ + SP II+D ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T + +N+ + + L +L+ L GV S+L+EGG+ + S Sbjct: 245 TTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD ++ + S+ +IG G+ S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|126462807|ref|YP_001043921.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC 17029] gi|126104471|gb|ABN77149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides ATCC 17029] Length = 356 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/320 (40%), Positives = 188/320 (58%), Gaps = 7/320 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI V +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + +L R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARAAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ C D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGG 324 + L D ++ + + +IGE G Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319 >gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5] gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5] Length = 401 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/325 (40%), Positives = 179/325 (55%), Gaps = 15/325 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AA+R + +G TS NP+V ++VK G V+ RG A G PHAEV AL AG ARG Sbjct: 34 FMRAAVREATKGLGRTSPNPAVGAVLVKGGRVVARGHHARAGGPHAEVVALRAAGARARG 93 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--IIVD 127 A Y TLEPC H+GR+PPC+ ++E G+RRV V DP+ V+GRG+ L + G ++ Sbjct: 94 ADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEVVTG 153 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+ ++ H + T E+R H+TLK AV+ D I + +TG ++ VH LR Sbjct: 154 VLRETCDELNAH-WFTFITERRPHVTLKAAVTLDGRIATRTGDARWVTGEPARRWVHRLR 212 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+LVG GT ADDP LT RL G + P+R++LD L D + + AP ++ Sbjct: 213 DRVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLDTDLSLPRDLNLFRQRSAAPTLV 272 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + R I CR DL+ LL L RGVT LLVEGGA V Sbjct: 273 AHAS------ARARDLGPRIELLRCRRGPGGVDLRDLLARLAARGVTHLLVEGGARVHAR 326 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 F+ LVD + ++ + + G GIP Sbjct: 327 FLQEGLVDRVAIFVAPKIAGGDGIP 351 >gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis serovar chinensis CT-43] Length = 370 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 183 YRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPT 325 >gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48] gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48] Length = 375 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/334 (36%), Positives = 181/334 (54%), Gaps = 17/334 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ A+ +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 7 LDAHYMARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L + GI Sbjct: 67 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG ++ V Sbjct: 127 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQ 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSLDS 234 LRA+S +L +VL D+ +T R L S P+R+++D +L LD+ Sbjct: 187 RLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDA 246 Query: 235 KIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 + P ++VT DDP A A + +N+ D + DL LL L RGV +L+ Sbjct: 247 PFFQA---GPALVVTAAGDDPRYAAAGHEL-LNLPGDDDQVDLPALLRCLAERGVNEILL 302 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 E GA + +F LVD L+ + +G P Sbjct: 303 EAGAGLVGAFARQGLVDEFQLFVAGTFLGSEARP 336 >gi|254456442|ref|ZP_05069871.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp. HTCC7211] gi|207083444|gb|EDZ60870.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp. HTCC7211] Length = 353 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 110/311 (35%), Positives = 172/311 (55%), Gaps = 8/311 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R + GLT TNPSV C+IVK +I G T+Y G PHAEV A++ + E A Sbjct: 1 MDLALDLARSNEGLTGTNPSVGCIIVKHDKIISIGQTSYNGRPHAEVNAIKNSIENLNDA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPCSH+G +PPC II+ ++ V+ + D D RV G+ + L K I V + Sbjct: 61 TMYVTLEPCSHHGVTPPCTSSIIKSKLKEVIYSIIDIDQRVKGKTYKILKSKKIKVRTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + K F Y + +K +++ KIA+S++N+I + IT S H LR + Sbjct: 121 LKKKVKQFYTPYFFNRQKKLPYVSGKIAISKNNLI--FSKKNRKITNIKSDKFTHFLRYK 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +D+IL+ T+ D+P+L CRL GL++ SP RIILD K + +S + KTA I Sbjct: 179 NDSILISYRTLNKDNPKLNCRLKGLEKFSPKRIILDNKLKTNTNSYLFKTANKENTIFFY 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFIN 304 L F+K I ++ + + K+ + L G ++LVEGG + +F++ Sbjct: 239 NEAIKSKILEFKKNKITVLKLNIDNNKRFNPSIIFKKLYTLGCRNVLVEGGDELTKNFVS 298 Query: 305 SRLVDSIILYR 315 +++ + L++ Sbjct: 299 NKIFNQFFLFK 309 >gi|256027507|ref|ZP_05441341.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. D11] gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D11] gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D11] Length = 370 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 200/363 (55%), Gaps = 17/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH G++PPCA+ IIE GI++ VV DP+ V+G+G++ + GI V Sbjct: 66 AKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIEDAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 126 KLGILEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 IIVT ND+ L KN+ I+ + + +K +L L G+ S+L+EGG+ Sbjct: 245 DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLGIDSVLLEGGSG 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351 + + ++D+ ++ + +IG+ P G+ N V + + +G ++ Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNSKFNIYGDNIS 363 Query: 352 LEY 354 +E+ Sbjct: 364 IEF 366 >gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621] gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621] Length = 379 Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++++E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLDAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334 >gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583] gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583] Length = 362 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 181/329 (55%), Gaps = 15/329 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ ++ G TS NP V +IVK+G +IG+G G HAE AL E +GA Sbjct: 1 MKIALQLAKKGCGFTSPNPMVGAVIVKEGRIIGQGWHEKYGEAHAERNALAACTENPKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YVTLEPC HYG+ PPC I+E GI RVV+ DP+ VSG+G+Q L ++GI+V + Sbjct: 61 TMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEHI 120 Query: 131 ESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 E ++F H T KR + +K A++ D I S +TG ++ V Sbjct: 121 LQEDCERLNEVFFHYIQT----KRPFVVMKYAMTMDGKISTKTGASKWVTGETARRHVAQ 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+ GIGT+L DDP+LTCR+ G + +P+RII D ++ L + ++ TA P Sbjct: 177 QRHRYAAIMAGIGTILTDDPQLTCRIEGGK--NPIRIICDTTLRIPLSANVVSTAKQIPT 234 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T D + KK +++ + R DL++L+ +L + + S+L+EGG + + Sbjct: 235 IIATCCRDAERCALYEKKGCHVLLVEERNGHVDLEQLMYLLGEKQIDSILLEGGGTLNWA 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE 330 ++S +V + Y + + G +P+E Sbjct: 295 ALSSGIVQKVQAYIAPKLFGGQAAKTPIE 323 >gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1] gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1] gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1] gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1] Length = 367 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D ++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 370 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V ++ + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 302 QTNNFNEIVTYISPKLIGGKDAPT 325 >gi|148826406|ref|YP_001291159.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE] gi|229846003|ref|ZP_04466115.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1] gi|148716566|gb|ABQ98776.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE] gi|229811007|gb|EEP46724.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1] gi|309973554|gb|ADO96755.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2846] Length = 372 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ + F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str. Kyoto] gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str. Kyoto] Length = 365 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/361 (33%), Positives = 195/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL+ + G + NP V ++VK+ +IG G Y G HAEV AL EAGE+A+G Sbjct: 7 YMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGSHAEVYALREAGEKAKG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 67 ATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVTG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME E K ++ +K+ + LK A + D I S ITG ++ +V +R Sbjct: 127 IMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEDARYKVQQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 I+VGIGT++ D+P LT R+ G + SP II+D + ++ L+SKI++T + I Sbjct: 187 DLSGIMVGIGTIIKDNPLLTTRIEGGR--SPRAIIVDSNLRIPLESKILETLNKRAIYIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T + +N+ + + L +L+ L GV S+L+EGG+ + S Sbjct: 245 TTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNFS 304 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD ++ + S+ +IG G+ S L++ + N ++ + G D+ + Sbjct: 305 ALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVES-LKDIF---NLQNLKFEKIGQDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407] gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407] gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 379 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +H P+R++LD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPT 334 >gi|89055912|ref|YP_511363.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Jannaschia sp. CCS1] gi|88865461|gb|ABD56338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Jannaschia sp. CCS1] Length = 365 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/328 (39%), Positives = 182/328 (55%), Gaps = 8/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL +G NP+V C++V++G V+GRG TA GG PHAEV AL +AG Sbjct: 3 DARWMALALSLGARGMGQVWPNPAVGCVLVREGRVVGRGWTARGGRPHAEVVALGQAGAL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGA AYV+LEPC+H G++ PCA +I+ G+ RVVV +DPD RV+G G+ L G+ V Sbjct: 63 ARGACAYVSLEPCNHVGQTGPCASALIDAGVARVVVACEDPDPRVAGGGIARLRAAGVEV 122 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + H R+V E R +TLK+A S D I A S ITG ++ +VH Sbjct: 123 VVGVGAAEAERAHTGFFRRVREGRPMLTLKVATSLDGRIATASGESQWITGPDARRRVHG 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA+LVG GT ADDP LT R G P+R+++ + +D + +TA PV Sbjct: 183 MRARHDAVLVGAGTARADDPSLTVRGFG-DVPQPVRVVVSRRLDVPVDLALGRTARDVPV 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC------RDLKKLLTILVGRGVTSLLVEGGAAVA 299 +V D P A A + D+ L L G+T + EGG A+A Sbjct: 242 WLVHGPDVPSAARAAWVAAGATLIESALGAGGQLDVGAALQRLGEAGLTRVFCEGGGALA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 S + + LVD + ++ +VIG G PS Sbjct: 302 ASLLTADLVDELAVFSGGLVIGAEGTPS 329 >gi|167464708|ref|ZP_02329797.1| riboflavin specific deaminase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 341 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 182/320 (56%), Gaps = 6/320 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G T NP V C++VKDG +IG G + G HAEV AL+ AG E Sbjct: 6 DEMYMRLALDMAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAE 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+TAYVTLEPCSH+G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI V Sbjct: 66 AEGSTAYVTLEPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ E A+ V +T+K A + D I S ITG +S+ VH Sbjct: 126 DVGLLAEEASAMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q ILV + TV+ADDP+L+ RL + P+RI+ D +L L++++++ P Sbjct: 186 MRHQHQGILVSVDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPT 244 Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I++ TE P A + + +++ C DL+ + L R + S+L+EGG + + Sbjct: 245 IVLTTELSSPERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGA 304 Query: 302 FINSRLVDSIILYRSQIVIG 321 + LVD I+L+ + +IG Sbjct: 305 MLEQGLVDKIMLFVAPKIIG 324 >gi|190572771|ref|YP_001970616.1| putative deaminase [Stenotrophomonas maltophilia K279a] gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a] Length = 361 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/326 (37%), Positives = 179/326 (54%), Gaps = 7/326 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + T NP V C+I V+G+G G PHAEV AL EA Sbjct: 6 SVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L G Sbjct: 66 GSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 126 IEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAARED 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V RA++ AIL G TVLADDP LT RL + P+R++LD + SL+ ++ Sbjct: 186 VQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLR-SLECGRVREG-G 243 Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + + +D V A A + ++ + R DL +L +L RG+ + E GA +A Sbjct: 244 APTLYM--HDAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326 + + +D ++LY++ ++G+ G P Sbjct: 302 ALLRGGWMDELLLYQAPTLLGDNGRP 327 >gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii F0264] gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii F0264] Length = 382 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 183/328 (55%), Gaps = 12/328 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DA +M AL ++ +G + NP V +IVK+G +IG G G HAEV A+E Sbjct: 14 ISKEDAEYMKMALELAKKGIGRVNPNPLVGAVIVKNGKIIGEGYHKMFGEAHAEVHAIEN 73 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGEE + AT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ V+G+G++ L Sbjct: 74 AGEETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKNS 133 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + +++ E + K ++ LK ++ D I ++ S IT ++ Sbjct: 134 GIEVTENVLKKECDELNQVFFKYIKSKIPYLFLKCGITLDGKIALSNGESKWITNEKARE 193 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + I+VGI TVL D+P LT R+ NG+ P RII+DP+ +++ D IIK Sbjct: 194 KVQYYRNKFMGIMVGINTVLYDNPSLTARIENGVD---PFRIIIDPNLRITEDYNIIKNN 250 Query: 241 LLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEG 294 +IVT +N D V RKK + I+ ++ ++ +L + G+ S+L+EG Sbjct: 251 SDGKTVIVTSVINKNSDKVEIFKERKK-LKFIFLKGKNFLMRDILEEIGKEGIDSVLLEG 309 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322 G + + +++D ++ S + G+ Sbjct: 310 GEKLISKAFSEKVIDGGEIFISNKIFGD 337 >gi|145298017|ref|YP_001140858.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp. salmonicida A449] gi|142850789|gb|ABO89110.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp. salmonicida A449] Length = 369 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 183/337 (54%), Gaps = 23/337 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D ++M+ AL +R T+ NP V ++VK G+V+G G G PHAE+ AL EA Sbjct: 3 SQDDYQWMNRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEIYALHEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+EARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V GRGL+ LS+ G Sbjct: 63 GDEARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPEVGGRGLRMLSEAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I D ++ SE + + R +T+K+ S D MA S ITG +++ Sbjct: 123 IKTDFGLLSSEAEALNPGFFKRMRTAFPLVTVKLGASLDGRTAMASGESQWITGPLARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V LRA DA+L TVLAD LT R + L P+R+I+D +L+ Sbjct: 183 VQRLRAGHDAVLSSAETVLADGASLTVRWDELPPSLKATYAKETLRQPLRVIVDSRNRLT 242 Query: 232 LDSKIIKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287 D + ++ PV++ D P + + + D + DL L +L R + Sbjct: 243 PDLPLFQST--GPVLLARHKAAGDWPEWV-----QQLELPLLDGKLDLVSLFMLLAKRNI 295 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+LVE G + + ++ LVD ++LY++ ++G+ G Sbjct: 296 NSVLVEAGPRLCGALLDKGLVDELVLYQAPKLMGDEG 332 >gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UMN026] gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412] gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302] gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1] gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli UMN026] gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412] gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302] gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1] Length = 367 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 30/372 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEE--GYLEKNFMCVRRD 344 VE G +A + + + LVD +I+Y + ++G I LE+ L+ F +R Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIR-- 354 Query: 345 YFGSDVCLEYIG 356 + G DVCL +G Sbjct: 355 HVGPDVCLHLVG 366 >gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium wasabiae WPP163] gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae WPP163] Length = 369 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 180/332 (54%), Gaps = 22/332 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 4 DAFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQQSGITV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 SHGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P+R+I+D +++ Sbjct: 184 FRAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +++ + V ++ V + + N + DL L+ +L R + S+ Sbjct: 244 RVVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE GA++A + +N+ +VD +I+Y + ++GE Sbjct: 298 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 329 >gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27] gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27] Length = 369 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 204/368 (55%), Gaps = 19/368 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI V Sbjct: 66 AKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 126 ELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 II+T ND+ L + KN+ I+ + + ++ +L L + S+L+EGG+ Sbjct: 245 DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGSG 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351 + + ++D+ ++ + +IG+ P G+ N V + + +G ++ Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AIPFINGFNFDNMEEVFKLPNPKFNIYGDNIS 363 Query: 352 LEYIGKNL 359 +E+ KNL Sbjct: 364 IEF--KNL 369 >gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 378 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 180/332 (54%), Gaps = 22/332 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 13 DELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 72 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 73 ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 133 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 193 FRAESAAILSSSATVLADDPSLTVRWSELGADIQKRYSEADLRQPVRVIVDSQQRVTPQH 252 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I+ + V ++ V + + N + DL L+ +L R + S+ Sbjct: 253 RIVSQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 306 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE GA++A + +N+ +VD +I+Y + ++GE Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338 >gi|262066887|ref|ZP_06026499.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum ATCC 33693] gi|291379396|gb|EFE86914.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum ATCC 33693] Length = 369 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 201/368 (54%), Gaps = 14/368 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EA Sbjct: 3 KTVDEKFMARAIELAFKGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GEEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + G Sbjct: 63 GEEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++E E K +L K ++ LK ++ D I S IT ++ + Sbjct: 123 IKVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEAAREK 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIK 238 V LR + AI+VGI TVL D+P L RLN G+++ +P R+++DP+ + ++SK + Sbjct: 183 VQFLRTKFTAIMVGINTVLKDNPSLDSRLNEEKYGIEKRNPFRVVVDPNLESPIESKFLH 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEG 294 IIVT +D+ L +NI +IY + + ++ +L L + S+L+EG Sbjct: 243 FD-DKKAIIVTSSDNRNLEKVKEYENIGTRLIYLEGKVFKMEDILKELGKLNIDSVLLEG 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G+ + + +D+ ++ + +IG+ P G+ NF + + S+ Sbjct: 302 GSGLISTAFKENAIDAGEIFIAPKIIGDNS-SIPFISGF---NFDSMEDVFKLSNPKFNI 357 Query: 355 IGKNLCLQ 362 G N+ ++ Sbjct: 358 YGDNISIE 365 >gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Bacillus coahuilensis m4-4] Length = 377 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 178/325 (54%), Gaps = 4/325 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A++ ++ G TS NP V +IV+DG ++G G G PHAE+ AL AG++A+G Sbjct: 10 YMNMAIQNAKVMSGQTSPNPLVGAVIVRDGEIVGFGAHMKAGEPHAEIHALRMAGDKAKG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSHYGR+ PCA +IE GI VVV DP+ V+G G++ L GI ++ Sbjct: 70 ATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILEDAGIKVITG 129 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME+E K + V R ITLK A S D I S IT ++ VH +R Sbjct: 130 VMEAEAKRMNEVFNHFIVTGRPFITLKTASSLDGKIATHTHNSKWITCEGAREDVHKMRN 189 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAILVG T+L D+P LT RL +P+RII+D K+ L+SK++ I Sbjct: 190 VYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIIDSALKIPLNSKVLTDKEAPTWIFT 249 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ + + + ++I +L ++ L V+SL++EGG + SF+ Sbjct: 250 SKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYLGKMNVSSLIIEGGGTINSSFVEE 309 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE 330 +LV ++Y + +IG P+ LE Sbjct: 310 KLVQKAVIYFAPKLIGGKEAPTFLE 334 >gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica Y11] Length = 369 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L + P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G A + + + +VD +ILY + ++G Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328 >gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2] gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2] Length = 369 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 17/368 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGA 296 II+T ND+ L + KN+ I+ + + ++ +L L + S+L+EGG+ Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDY--FGSDVC 351 + + ++D+ ++ + +IG+ IP + G +E+ F + +G ++ Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSAIPFINGFNFGNMEEVFKLPNPKFNIYGDNIS 363 Query: 352 LEYIGKNL 359 +E+ KNL Sbjct: 364 IEF--KNL 369 >gi|256020381|ref|ZP_05434246.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella sp. D9] gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shigella sp. D9] gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shigella sp. D9] Length = 367 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V L Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 366 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/338 (37%), Positives = 182/338 (53%), Gaps = 33/338 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAGE ARGA Sbjct: 1 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI V + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + ++ R R ++ +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L ++ P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPFFQA 240 Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++VT E+ +LALA ++ DL++L+ L RGV Sbjct: 241 ---GSALVVTCAAASARGRYQEDGHEMLALADSAGHV--------DLRRLMGELGARGVN 289 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G +A +F LVD L+ + +G P Sbjct: 290 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARP 327 >gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella boydii CDC 3083-94] gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94] Length = 367 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis F0359] gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis F0359] Length = 371 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 9/319 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G TS NP+V C+IVKDG ++GRG G PHAEV AL EA E+A+GA Sbjct: 1 MEEALNLARMGLGYTSPNPTVGCVIVKDGEIVGRGYHHQAGTPHAEVWALREAKEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+HYG++PPCA+ +++ G+ +VV + DP+ V+G+G L GI ++ + Sbjct: 61 TVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIVGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M E ++ + + I +K+A S D S IT ++ + H LR+ Sbjct: 121 MSKEAVKMNEVFIKNMIVHKPFIAVKLAQSLDGCTASRTGKSKWITNDTARQEGHYLRSL 180 Query: 190 SDAILVGIGTVLADDPELTCRLN---GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 DAILVGI TV +D+P LT R + P RIILD ++ L + ++ +I Sbjct: 181 YDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRIILDSTGRIDLQALLVTDKQSPTII 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + TE A + +I DL L+ L +G+ S+L+EGG+ V S Sbjct: 241 VTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGLMDTLYKKGICSILIEGGSTVIGS 300 Query: 302 FINSRLVDSIILYRSQIVI 320 F + LVD + ++ I++ Sbjct: 301 FFDENLVDKLYVFTGHIIM 319 >gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 369 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L + P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G A + + + +VD +ILY + ++G Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328 >gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli HS] gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS] Length = 367 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQEDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863] gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v] Length = 367 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TV+ADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDNQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQSGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADVPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|332187003|ref|ZP_08388744.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17] gi|332013013|gb|EGI55077.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17] Length = 313 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 123/315 (39%), Positives = 165/315 (52%), Gaps = 42/315 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AAL + +G T+ NP+V C++V+DG VIGRG T GG PHAE AL EAGE A GA Sbjct: 1 MGAALALAGRGIGRTAPNPNVGCILVRDGRVIGRGWTQPGGRPHAEAMALAEAGESACGA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TAYVTLEPC+H R P C +I G+ +V + DPD R +G+G GI V Sbjct: 61 TAYVTLEPCAHVSTRGPACTDLLIAAGVAHIVAAMGDPDPRTNGQGFDRARAAGIAVTTG 120 Query: 130 M-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + ESE + + +LTR+ ++R +TLK+A S D I S ITG ++ HL R+ Sbjct: 121 ICESEARAMIAGFLTRRAKERPFVTLKLATSLDGRIARPDGTSRWITGPQARAHTHLERS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + +AILVG GT+ AD P L RL GL+ SP RI+L Sbjct: 181 RHEAILVGRGTLQADSPRLDVRLPGLETRSPRRILL------------------------ 216 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + +P I + GV L+VEGGA A +F+ + LV Sbjct: 217 SRTSEPGWETISSPHAITHLA----------------GVDRLMVEGGAQTASAFLAADLV 260 Query: 309 DSIILYRSQIVIGEG 323 D ++LYR+ I+IGEG Sbjct: 261 DRLLLYRAPILIGEG 275 >gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia kristensenii ATCC 33638] gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia kristensenii ATCC 33638] Length = 369 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 178/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L + P+R+I+D H +++ + Sbjct: 184 FRAQSSAILSTSATVLADDPSLTVRWQELDADTQARYPQDTLRQPVRVIVDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G A + + + +VD +ILY + ++G Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328 >gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 369 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 177/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L + P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G A + + + +VD +ILY + ++G Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLG 328 >gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21] gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21] Length = 369 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/328 (38%), Positives = 192/328 (58%), Gaps = 7/328 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S + M AL +R VG T+ NP+V C+IV+DG V+G G G PHAEV AL+ Sbjct: 1 MSDLHLKMMRLALCEARKGVGKTAPNPAVGCVIVRDGEVVGTGWHKKAGTPHAEVHALKA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSG+G+Q L Sbjct: 61 AGEKAAGADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDA 120 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ + E L+ + ++ R + LK A++ D A S +T ++ Sbjct: 121 GIAVEVGLLEEESRELNLPFIKWIQTRLPFVVLKSALTLDGKSATASGDSKWVTSDRARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR + DAI+VG+GTV DDP LTCR+ G ++ P+R+I+D ++ L + ++ Sbjct: 181 EVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPGGKD--PLRVIVDSTLRIPLHAAVLGVPS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAA 297 A II T + D A + + I+ C D R DL L L RGV S+L+EGG+ Sbjct: 239 KAQTIIATCSGDEAKMQALKAHGVEILTCCESDGRVDLADLFVKLGARGVQSVLLEGGSH 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGI 325 +A + + + L+D +++ + ++G G+ Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGM 326 >gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC586] gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC586] Length = 367 Score = 199 bits (506), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 184/339 (54%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +++ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQCFRAQASAILSTSQTVLADNASLAVRWHDLPKSVQAQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A ++ I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISTENGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16] gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16] Length = 367 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 188/336 (55%), Gaps = 12/336 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+M AL ++ G T NP V C++VK+G +IG G G HAE+ AL AG EA+ Sbjct: 4 RYMRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMAGSEAK 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G+TAYVTLEPCSH GR+ PCA ++E G++ V++ DP+ VSG G++ L + G+ V Sbjct: 64 GSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQT 123 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E + V + ++TLK AVS D I S IT ++ VH LR Sbjct: 124 GILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRLR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +++ AI+VG+ TVL D+P LT R+ NG +P+R+I+D H + +D+ I+ T LAP Sbjct: 184 SENQAIIVGVDTVLKDNPSLTARIANG---RNPIRVIVDSHLRTPVDA-IVTTDGLAPTW 239 Query: 247 IVTENDD---PVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T + P K + ++ DLK+++ L ++S L+E G + Sbjct: 240 IFTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNA 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 +F+ ++LV +I+Y + +IG P+ LE ++K Sbjct: 300 AFLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDK 335 >gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 378 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL++L+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339 >gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus VM223] gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus VM223] Length = 367 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 186/339 (54%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVI-IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR- 285 +L + + +T +PV+ + +EN D L +N + DL++LL L + Sbjct: 241 HQLHPELSLYQTP--SPVLRVASENAD----LCISAENGKL------DLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32] gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32] Length = 368 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 197/371 (53%), Gaps = 15/371 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ F M A+ +R VG T+ NP+V C+IVKDG ++G G G PHAE+ AL + Sbjct: 1 MTDFAENMMKRAVSLARKGVGKTAPNPAVGCVIVKDGAIVGEGWHRKAGTPHAEIHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GA +VTLEPCSH+G++PPCA +I + RV V + DP+ RV G+G+ L Sbjct: 61 AGALAEGADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E + + ++ + LK A++ D I AG S +T S+ Sbjct: 121 GIQVEAPLLEEKCRALNEPFIKHVTTGLPFVILKTAMTMDGKIATAGMDSKWVTSEKSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR++ D I+VG+GT++ DDP LT R+ G +P+R+++D ++ D+ ++ Sbjct: 181 YVHKLRSELDVIMVGVGTIIKDDPLLTSRIPG--GRNPLRVVVDSKLRIPPDAHVLHCDS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 A ++ T + D ++ C D DL L+ L RGV S+L+EGGA Sbjct: 239 TAKTVVATISSDEAQVSRLAGLGAEVLSCGEDGDRVDLCCLMAKLGKRGVQSVLLEGGAE 298 Query: 298 VAHSFINSRLVDS-IILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +A + ++D + Y ++V G+G G + L+ ++ V + G D+ Sbjct: 299 LAGEALRKGIIDKCMFFYAPKLVAGDGLGPFAGNGAGKMADALKLQWVTVTK--IGVDIL 356 Query: 352 LEYIGKNLCLQ 362 ++ + +CLQ Sbjct: 357 VQGYPEKICLQ 367 >gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301] gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301] Length = 370 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 116/322 (36%), Positives = 175/322 (54%), Gaps = 8/322 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ ALR + + T NP V C+IVK+ ++G+G G PHAEV AL EAG Sbjct: 6 DHTYMTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALREAGAN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA AYVTLEPC+H+GR+PPC +I ++RVVV + DP+ V+G G++ L GI V Sbjct: 66 AEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAHGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +ME+E K +++R ++ K+A S D + S+ ITG ++ V Sbjct: 126 EVGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARLDVQH 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL--LA 243 RAQS AI+ GIGTVL D+P + RL P+R+I+D + + D K++ L L+ Sbjct: 186 WRAQSCAIVTGIGTVLTDNPSMNVRLENTGRQ-PLRVIVDSNLQTPTDCKMLNPELLSLS 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 PV++ D A A +++ +L LL L R V +L+E G + Sbjct: 245 PVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAGQGLN 304 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 +F+ + LVD I Y + ++G Sbjct: 305 GAFLQAGLVDEFIFYYAPKLMG 326 >gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM573] gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM573] Length = 367 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 183/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A ++ I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISAENGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas perforans 91-118] gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas perforans 91-118] Length = 369 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 18/333 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 RA++ AIL G GTV+ADDP +T RL + P+R++LD + +L + I+ Sbjct: 188 DGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLR-TLACRNIRQG 246 Query: 241 LLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + EN D LA+ + DL +L +L RG+ + VE Sbjct: 247 SAPTLYLHGENVAAPSLDDAQFLAVPLQAGRF--------DLPAVLALLAERGINEVHVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA ++ + + + LVD +++Y + +++G+ P Sbjct: 299 AGAMLSGALLQAGLVDELLVYMAPVLLGDTARP 331 >gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Paenibacillus polymyxa SC2] gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein (Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Paenibacillus polymyxa SC2] Length = 366 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 123/324 (37%), Positives = 176/324 (54%), Gaps = 8/324 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AGE A+ Sbjct: 6 KYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI ++ Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVIV 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E + V KR IT+K AV+ D I S IT ++ VH LR Sbjct: 126 GVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRLR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + ILVG+ TV+ D+P+LT RL + +P+RIILD ++ LD+++I I Sbjct: 186 HEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 D + + + Y + +L ++L IL V+S+ VEGGA V SF Sbjct: 244 TGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDILGAAEVSSVFVEGGAEVNASF 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326 + L D ++LY + ++G P Sbjct: 304 VQQGLADKLVLYIAPKLVGGRSAP 327 >gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 378 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL++L+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339 >gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense Az-Fu1] gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense Az-Fu1] Length = 366 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 179/327 (54%), Gaps = 11/327 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +M+ AL ++ G T NP+V +IVKDG +IG+G G PHAE +A+++A G + Sbjct: 7 YMNIALDLAKERKGYTHPNPTVGAVIVKDGKIIGKGFHYKAGMPHAEREAIKDAKSKGFD 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RG+T +V+LEPC HYG++PPC + I+E GI +VVV DP+ V+G+G++ L QKG+ + Sbjct: 67 LRGSTIFVSLEPCCHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGVEV 126 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E + + + +KR + +K+A + D I S IT S+ H+ Sbjct: 127 VLGVLEKQAQKINEDFFIYITQKRPFVHIKVAQTIDGKIATKTGSSKWITSQESRKYAHI 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR Q+ A+LVG T D+P LT R +Q E P+R++LD K+ L+ I Sbjct: 187 LRNQATAVLVGSNTAQLDNPSLTVRY--IQTERQPIRVLLDSKLKVPLNYNIYSKEADTI 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 VI E D + ++ N+ + D + +K +L IL + LLVEGG V Sbjct: 245 VITSKEADPYKKEILSKQSNVKLYTLDTYNGKFKIKDILEILYQNQIVHLLVEGGKEVIT 304 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 SFI D I L+ + ++GE GI S Sbjct: 305 SFIKEDFWDKISLFTAPKIVGEDGISS 331 >gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019] gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli SE11] gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli IAI1] gi|260853634|ref|YP_003227525.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O26:H11 str. 11368] gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O111:H- str. 11128] gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088] gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7] gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1] gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1] gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271] gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019] gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11] gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli IAI1] gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O26:H11 str. 11368] gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O111:H- str. 11128] gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088] gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1] gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7] gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1] gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1] gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14] gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli 1357] gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120] gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3] gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299] gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 378 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 179/332 (53%), Gaps = 22/332 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 13 DELYMARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMAGER 72 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 73 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 133 SHGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 193 FRAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTPQH 252 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I+ + V ++ V + + N + DL L+ +L R + S+ Sbjct: 253 RIVSQPGETWLARVQADEQAWPQGVEQVTLPQHNGGV------DLVALMMVLGRRQINSV 306 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE GA++A + +N+ +VD +I+Y + ++GE Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338 >gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A] gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7] gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A] gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7] gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli EC4100B] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVILMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] Length = 372 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 183/333 (54%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDHVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D M S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L T++ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II LK+++ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVS--SEPRDLTGFPDFCEQIILPKENLLKEVMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168] gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 192/367 (52%), Gaps = 22/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP+LT R + L E P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 +I+ T+ DD V + R I + + LL +L+G+ + SL VE Sbjct: 243 RIVSQPGET-WFARTKEDDRVWPESVR--TIQVPEHNGHLDLVLLLMLLGKQQINSLWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGS 348 G +A + + + +VD +I+Y + ++G +P LE+ F Y G Sbjct: 300 AGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPG-LEKLADAPQFQFKEIRYTGP 358 Query: 349 DVCLEYI 355 DVCL I Sbjct: 359 DVCLHLI 365 >gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048] gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048] Length = 379 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 176/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI V Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRILEEAGIKV 131 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLGAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVSKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334 >gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus c2] gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus c2] Length = 386 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 122/335 (36%), Positives = 182/335 (54%), Gaps = 14/335 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D R+M AL + + T NP V C+IV G V+GRG A G PHAEV AL+EA Sbjct: 11 SPDDTRWMREALALAERGLTTTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQEA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+H GR+P CA + + G+RRVV + DPD RV+G G L G Sbjct: 71 GERAKGATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTAG 130 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ ++E+E + +L+R R +T+KIA S D +A S ITG +++ Sbjct: 131 VQVESGLLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARHD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL------QEHSPMRIILDPHFKLSLDSKI 236 V LRA+ A+L G+ TVL DD L RL+ P+R++LD +L + I Sbjct: 191 VQFLRARHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAPI 250 Query: 237 IKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 + V I T + D + + + ++ DL +L L +G++ +L Sbjct: 251 FD--VQGEVRIYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVL 308 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 VE G +A +F++ VD +I+Y++ +++G P Sbjct: 309 VESGPKLAGAFVDQGWVDELIIYQAPVLLGHKAQP 343 >gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] Length = 367 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 189/351 (53%), Gaps = 18/351 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 GTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T N + + +L ++L +L +G++SLL+EGG V SFI Sbjct: 244 TTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGRKGISSLLIEGGGEVNASFIE 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 + L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 304 NELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 354 >gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB] gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB] Length = 366 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 126/337 (37%), Positives = 180/337 (53%), Gaps = 26/337 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL +R T NP+V C+IV+DG V G G G PHAEV AL AGE Sbjct: 1 MDELYMARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIA 120 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L S P+R+I+D +++ Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQ 240 Query: 234 SKII----KTALL--APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++I +T L+ P + +A+ R++ + DL ++ +L + + Sbjct: 241 HRLISQPGETWLMRHQPDQQHWPAEVTQIAVPLREQQL--------DLVAMMMLLGQKQI 292 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE GA++A + + + LVD +I+Y + ++G G Sbjct: 293 NSVWVEAGASLAGALLQAGLVDELIVYLAPKLLGHEG 329 >gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 378 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 180/332 (54%), Gaps = 22/332 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 13 DELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAGER 72 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 73 ARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAV 132 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 133 SHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 192 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L P+R+++D +++ Sbjct: 193 FRAESAAILSTSATVLADDPSLTVRWSELGADVQKRYSESDLRQPVRVVVDSQQRVTPQH 252 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I+ + V ++ V + + N + DL L+ +L R + S+ Sbjct: 253 RIVNQPGETWLARVQADEQAWPQGVEQVMLPQHNGGV------DLVALMMVLGRRQINSV 306 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE GA++A + +N+ +VD +I+Y + ++GE Sbjct: 307 WVEAGASLAGALLNAGVVDELIVYLAPKLLGE 338 >gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans DSM 20731] gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans DSM 20731] Length = 371 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 176/326 (53%), Gaps = 17/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V C+IV +G ++G+G G PHAE+ A+ +AG Sbjct: 9 DEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMADAGN 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + G TAYVTLEPCSHYGR+ PC + +I GI++VV DDP+ +V+GRG L + G+ Sbjct: 69 QVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEAGVE 128 Query: 126 VDR-----MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V R + ++F+H T R + LK A++ D I A S I+ S+ Sbjct: 129 VVRGVLADKANRQNEVFMHWMKT----GRPFVALKYAMTLDGKIATASGDSKWISNEQSR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR+ D ILVG TVL DDP LTCRL ++ +P+RI+LD H +L +D K+ Sbjct: 185 TYAHKLRSIYDCILVGKNTVLNDDPSLTCRL--VEGKNPLRIVLDSHCQLPMDRKVFTDG 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGG 295 +++ + D A AF+ + ++ DL LL L + TS+LVEGG Sbjct: 243 EARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILLDRLGQQEKTSVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG 321 + V +F + RL + + + +IG Sbjct: 303 SQVHGAFFDGRLAQRVYAFIAPCLIG 328 >gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella dysenteriae CDC 74-1112] Length = 367 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 V+ G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVDAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIHH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|145632331|ref|ZP_01788066.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655] gi|144987238|gb|EDJ93768.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655] Length = 372 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSLHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ + F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 333 >gi|77463964|ref|YP_353468.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides 2.4.1] gi|77388382|gb|ABA79567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides 2.4.1] Length = 356 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 129/320 (40%), Positives = 187/320 (58%), Gaps = 7/320 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + + R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARTAHAGFQKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ C D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGG 324 + L D ++ + + +IGE G Sbjct: 300 AGLCDELVTFTAGKLIGEEG 319 >gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea ATCC 19718] gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea ATCC 19718] Length = 363 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 112/321 (34%), Positives = 178/321 (55%), Gaps = 4/321 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +MS ALR + + TS NP V C+IV G V+G G G PHAE+ AL +A Sbjct: 3 TALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRKA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GAT YVTLEPCSH+GR+PPC + +I+ G+ +VV+ ++DP+ V+G+G +WL + G Sbjct: 63 GDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ + + ++TR R + KIA S D + S IT ++ Sbjct: 123 IAIQAGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S AIL GI +V DDP+LT R + PMRI++D + + L +K+++ A Sbjct: 183 GHKWRARSCAILTGISSVRKDDPQLTVRYITVSRQ-PMRIVVDSNLETPLQAKLLQNADT 241 Query: 243 APVIIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + + + + L +I ++ DLK ++ L G+ LLVE G + Sbjct: 242 TWIFTAQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPVLNG 301 Query: 301 SFINSRLVDSIILYRSQIVIG 321 + + + LVD II Y + ++G Sbjct: 302 ALVTAGLVDEIIFYFAPSLLG 322 >gi|322381771|ref|ZP_08055725.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like protein/5-amino-6-(5-phosphoribosylamino) uracil reductase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154159|gb|EFX46481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like protein/5-amino-6-(5-phosphoribosylamino) uracil reductase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 362 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 121/344 (35%), Positives = 192/344 (55%), Gaps = 10/344 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T NP V C++VKDG +IG G + G HAEV AL+ AG EA G+TAYVTLEPCSH+ Sbjct: 7 GQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAEAEGSTAYVTLEPCSHF 66 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAY 141 G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI VD ++ E A+ Sbjct: 67 GKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEVDVGLLAEEASAMNEAF 126 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 V +T+K A + D I S ITG +S+ VH +R Q ILV + TV+ Sbjct: 127 NKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHTMRHQHQGILVSVDTVI 186 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAF 260 ADDP+L+ RL + P+RI+ D +L L++++++ P I++ TE P A Sbjct: 187 ADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPTIVLTTELSSPERRRAL 245 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +++ C DL+ + L R + S+L+EGG + + + LVD I+L+ + Sbjct: 246 EELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGAMLEQGLVDKIMLFVAP 305 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 +IG P + E+ +R + F + E +G+++CL Sbjct: 306 KIIGGKLSPQAISMEGWERMKDALRLERFQA----EPVGEDICL 345 >gi|254796854|ref|YP_003081691.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str. Illinois] gi|254590091|gb|ACT69453.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str. Illinois] Length = 359 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/320 (38%), Positives = 175/320 (54%), Gaps = 22/320 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE AL+ AG +ARGA Sbjct: 1 MEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 Y TLEPC+H+GR+ PC II GI+ V + DPD RV+G+G+Q L + GI+V + Sbjct: 61 DLYTTLEPCAHHGRTAPCTDLIIGSGIKNVFIGTRDPDTRVNGKGIQKLRESGIVVTTGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E I Y RQV + +TLK A + D I S IT + VH+LR Sbjct: 121 LKRECCISNIGYFYRQVFGKPFVTLKTATTLDGKIACFNGKSTWITSPALRRTVHMLRRI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S ++++ T+ DDP+L+CRL G+++ S ++++LD ++S +P + Sbjct: 181 SSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEIS-----------SPNFKIF 228 Query: 250 ENDDPVLALA----FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ND V + F+ KN + DL +L L G+ S+LVE G + S Sbjct: 229 -NDGIVWSFGKKNTFKHKNFFNFEANLNGEKLDLGDILQQLGTMGINSVLVECGGKLFSS 287 Query: 302 FINSRLVDSIILYRSQIVIG 321 F+N L D II +RS V G Sbjct: 288 FVNGNLFDQIIWFRSNKVAG 307 >gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1] Length = 371 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/364 (35%), Positives = 191/364 (52%), Gaps = 20/364 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL + +G TS NP V C++V+DG ++G G G HAEV AL++A Sbjct: 11 DEYYMRRALSLALRGMGRTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERR 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGA YVTLEPC H+GR+PPCAQ ++ G+ RVV DP+ RV+ GL L + G Sbjct: 71 GETARGAEVYVTLEPCCHFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAG 130 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +E E + ++ Q R +TLK A D + + S ITG ++ Sbjct: 131 VEVSAPCLEEEARRVNKGFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQW 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +RA DAILVG+ TVL DDPELT R + SP+R+ILD H + ++ ++ L Sbjct: 191 AHGMRASHDAILVGVSTVLKDDPELTVRHT--EGKSPLRVILDSHLRTPTSARALRGGCL 248 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 I+T + + A A + ++ R DL+ L L GV +L+VEGG V Sbjct: 249 ----ILTISQEAERARALQAAGARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRV 304 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + + L DS+ L+ + V+GEG + EG+ + V + DV +G N Sbjct: 305 LTALMEGHLADSLSLFVAPRVLGEG---IGMGEGF---SPASVAESFNLKDVTSRPVGDN 358 Query: 359 LCLQ 362 L ++ Sbjct: 359 LLVE 362 >gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobotulus glycolicus DSM 8271] gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobotulus glycolicus DSM 8271] Length = 398 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 179/332 (53%), Gaps = 9/332 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M AL + G TS NP V CLIVKDG++IG G G PHAEV AL A Sbjct: 36 SDQDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKDGLIIGEGYHQKAGTPHAEVHALTAA 95 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A GA YVTLEPCSH+GR+PPC +I+ G++RV V + DP+ V G+G+Q + G Sbjct: 96 GKRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAAG 155 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E+E ++ + K A + D S IT +S+ Sbjct: 156 IEVFTGLLENEAAKLNEPFVKAMKTNLPFVLYKSASTADGKTASCTGDSRWITNDLSRKY 215 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR D I+VG T+L D+P+LTCR+ G + P+R+I+D + +++++ + Sbjct: 216 VHELRNSYDVIMVGSKTILQDNPQLTCRIAGGRH--PVRLIVDGTLSIPEEARLLSLSEG 273 Query: 243 APVIIVTENDDPVLALAFRKKNINI---IYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T P +K NI +Y + R LK L+ ++ +G S+L+EGG Sbjct: 274 STIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKTLMQDILEKGYQSVLLEGGGT 333 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 +A I +LVD + L+ + +IG+ SP+ Sbjct: 334 LAGQMIAEKLVDKVNLFIAPKIIGQSSF-SPI 364 >gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli OP50] Length = 361 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 188/363 (51%), Gaps = 20/363 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LLRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 T+ D R I + DL L+ L + + S+ VE G + Sbjct: 241 QPGET-WFARTQEDSREWPETVRTLLIP-AHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A + + + LVD +I+Y + ++G +P LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPDVCLH 357 Query: 354 YIG 356 +G Sbjct: 358 LVG 360 >gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea sp. MED297] gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297] Length = 366 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/369 (34%), Positives = 200/369 (54%), Gaps = 14/369 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++S DA +M+ AL+ + T+ NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 3 MSMTSHDA-WMAQALKLAARGRRTTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG +ARGATAYVTLEPCSHYG++PPCA +I+ G+ VV + DP+ +V+G+GL+ L Sbjct: 62 AEAGSKARGATAYVTLEPCSHYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLR 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ ++ +E + +L R R + K+A S D +A S ITG + Sbjct: 122 NAGIEVISGVLNAEAERLNRGFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V RA S A++ G+ TV+AD+P L RL+G + P+RIILD + + S I+ T Sbjct: 182 RQDVQSGRADSCAVVTGVETVVADNPSLNVRLDG-ADRQPVRIILDTQARTPVPSTIV-T 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 VII +P+ + ++ D DL L+ + + +E G Sbjct: 240 LPGRTVIIHGAQANPLSLERLQAAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A + +F L+D + LY++ I++ GG P+ + L+ R D DV ++ Sbjct: 300 ATLTGAFAEQGLLDELWLYQAPIML--GGATRPVADFRLDSLKQAHRFDV--DDV--RFV 353 Query: 356 GKNLCLQEL 364 GK++ Q L Sbjct: 354 GKDIRWQLL 362 >gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51] gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51] Length = 376 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/339 (36%), Positives = 186/339 (54%), Gaps = 27/339 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 8 LDAHYMARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+GRGL+ L++ GI Sbjct: 68 RARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRRLAEAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R ++ K+A+S D MA S ITG +++ V Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHS--------PMRIILDPHFKLSLDS 234 LRA+S +L +VLAD+ +T R + GL + P+R+++D +L LD+ Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGRLRLPLDA 247 Query: 235 KIIKTALLAPVIIVTE-NDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGV 287 + P ++VT DDP A A + N + DL LL L RGV Sbjct: 248 PFFQA---GPALVVTAVADDPGYAAAGHELLCLPGDNGQV------DLAALLHALGARGV 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+E GA++ +F LVD L+ + +G P Sbjct: 299 NEVLLEAGASLVGAFARLGLVDEYQLFVAGTFLGSHARP 337 >gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str. 306] gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri str. 306] Length = 369 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 185/336 (55%), Gaps = 24/336 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L + Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 128 GIEVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKII 237 V RA++ AIL G GTV+ADDP +T RL E + P+R++LD + +L + I Sbjct: 188 DVQRWRARAGAILTGAGTVMADDPSMTVRLG---EDTPVVPPLRVVLDARLR-TLACRNI 243 Query: 238 KTALLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + + EN D LA+ DL +L +L RG+ + Sbjct: 244 RQGDAPTLYLHGENVAAQSLDDAQFLAMPLHAGRF--------DLAAVLALLAERGINEV 295 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 VEGGA ++ + + + LVD +++Y + +++G+ P Sbjct: 296 HVEGGATLSGALLQAGLVDELLVYMAPVLLGDTAKP 331 >gi|269103255|ref|ZP_06155952.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163153|gb|EEZ41649.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photobacterium damselae subsp. damselae CIP 102761] Length = 378 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/334 (37%), Positives = 185/334 (55%), Gaps = 20/334 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+FD + MS A+ ++ T+ NP+V C+IV +G ++G G G PHAEV AL A Sbjct: 3 SAFDHKMMSRAIALAKKGRFTTAPNPNVGCVIVNNGQIVGEGFHYRAGLPHAEVFALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ARGATAYVTLEPCSHYGR+PPCA +IE GI RVV + DP+ +V+G G+ L G Sbjct: 63 GDKARGATAYVTLEPCSHYGRTPPCALALIEAGISRVVCAMVDPNPKVAGNGVTLLQNAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ ++E + K ++ ++ LK+A S D +A S ITG ++ Sbjct: 123 VTVEVGLLEQDAKALNLGFIKAMQTGMPYVQLKMASSLDGRTALANGESKWITGPQARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHS------PMRIILDPHFKLS 231 V RAQ+ AIL TV+ADDP + R L Q++ P+R+I+D +LS Sbjct: 183 VQHFRAQAGAILSTSATVIADDPSMNIRWQELPFYIQQQYPKSELRLPIRVIIDSQNRLS 242 Query: 232 LDSKIIK---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287 D ++ LLA E D V + + I+ + DL +LL LV G+ Sbjct: 243 PDYQLFHLPGKTLLA----RCEQGDEVWPDSVTQLIISRTPDSSQLDLHELLQQLVKLGI 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + VE GA +A + + ++LVDS ILY++ ++G Sbjct: 299 YHIWVEAGAGLAGALVQNQLVDSFILYQAPKLMG 332 >gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 360 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 188/350 (53%), Gaps = 18/350 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG TV D+P LT R+ NG +P+R+ILD ++ +++ ++ I Sbjct: 181 NAAILVGANTVQKDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDGEAPTWIFT 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T N + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 238 TSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIEN 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 L+D +ILY + +IG PS +E + K +F V +DY Sbjct: 298 ELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFKDISFTPVGKDY 347 >gi|332290249|ref|YP_004421101.1| hypothetical protein UMN179_02191 [Gallibacterium anatis UMN179] gi|330433145|gb|AEC18204.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 372 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 117/340 (34%), Positives = 184/340 (54%), Gaps = 33/340 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +FM+ A+ ++ + NP+V C++VK+G ++G+G G PHAEV A+ EA Sbjct: 7 SQQDHQFMALAIELAKKGRFTCTPNPAVGCVLVKNGEIVGKGYHEKAGEPHAEVMAMREA 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSHYGR+PPCA+ +IE G++RVV + DP+ +V+GRGL+ L+ G Sbjct: 67 GEKANGATAYVTLEPCSHYGRTPPCAKGLIEAGVKRVVAAMQDPNPQVAGRGLKMLADAG 126 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +++ + + +L R ++ LK+A+S D MA S ITG ++ Sbjct: 127 IETAVGLLQQQAEQLNKGFLKRMRTGFPYVQLKMAISIDGRTAMANGESQWITGEAARQD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231 V RA + AIL TVL D+ L R L QE P+R+ILD ++ Sbjct: 187 VQQYRAMASAILSSSKTVLTDNAALNVRWQQLPLEVQSIYPQEKLRQPLRVILDSQHQIE 246 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---------LKKLLTIL 282 ++ E++ P+L ++ +N+ C+ L LL +L Sbjct: 247 PKGRLF------------ESESPILLVSPSARNMAHFPAFCQQQQLVESPYYLTDLLNLL 294 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + + S+ VE GA +A + I + LVD +I+Y + ++G+ Sbjct: 295 GKQQINSVWVEAGATLAGALIEAGLVDELIVYIAPKLLGD 334 >gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens MLS10] gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens MLS10] Length = 361 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 194/365 (53%), Gaps = 21/365 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + G TS NP V C+IVK + G G G HAE QAL A EE Sbjct: 3 DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHNQIKGIGAHLKAGEWHAERQALHMAKEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH+G++PPC+ +IE GI RVV DP+ VSGRG++ L GI V Sbjct: 63 ANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIEV 122 Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ E + F HA +T+Q ++TLK A S D I A S I+ S+ Sbjct: 123 VEGVQKERADRMNRWFFHA-ITKQT---PYVTLKFATSLDGKIATATGESQWISNEKSRA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R Q D ILVG TV+ D+P LT RL + +P+RII+D + DS ++ Sbjct: 179 DVHRIRHQVDGILVGRETVVQDNPSLTTRLPAGGK-NPIRIIMDRTLRTPPDSIMLNDG- 236 Query: 242 LAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +PV IVT + + +A + I I D R ++++L +L +G+++LLVEGG Sbjct: 237 QSPVWIVTNAGASQERKEMLIASGAEIIEITDKD-RFIEEMLEVLGRQGISTLLVEGGGT 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + F+ L +I Y++ ++IG S +++ + + ++F DV Sbjct: 296 INDQFLTRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAPRLLLDQEEWFDDDVKR 355 Query: 353 EYIGK 357 Y+ K Sbjct: 356 TYVYK 360 >gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12] gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12] Length = 379 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/338 (37%), Positives = 189/338 (55%), Gaps = 22/338 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL A + Sbjct: 6 DTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAMATKR 65 Query: 67 A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ +VSGRG++ L Sbjct: 66 ASQAALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIKMLRD 125 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI VD ++ E ++ R +T+K+A S D ++ S ITG S+ Sbjct: 126 AGIEVDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITGPESR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQE-------HSPMRIILDPHFKL 230 V LRA+++A++ GI TVL DDP L R L L E H P+R++LD +L Sbjct: 186 RDVQRLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDSRARL 245 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTIL---VGRG 286 + +K+ + +P+++V+ D P ++++ +I D + LT L +G+ Sbjct: 246 TSTAKLF--TVTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAHLGKT 303 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+L+E GA +A S I+ D +ILY++ ++G G Sbjct: 304 YNSVLIEAGATLAGSVISQNHADELILYQAMKILGSNG 341 >gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TMA 21] gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TMA 21] Length = 367 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/339 (36%), Positives = 180/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E + + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEEDARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V LLVE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQLLVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|308048548|ref|YP_003912114.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Ferrimonas balearica DSM 9799] gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Ferrimonas balearica DSM 9799] Length = 373 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 187/333 (56%), Gaps = 20/333 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ DAR M+ AL +R T NP V C++V+DG V+G G G PHAEV AL A Sbjct: 3 STDDARHMARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ARGATAYVTLEPCSHYGR+PPC+Q +I+ G+ RVV + DP+ +V+GRGL L G Sbjct: 63 GDKARGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +M +E + ++ R R + +K+A S D +A S ITG ++ Sbjct: 123 IETQHGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSKIIKT 239 V LRA SDA++ G +VLAD+P + R L H RI L ++ +D K Sbjct: 183 VQRLRAISDAVITGADSVLADNPSMNVRHAELG-HWQSRISEADLQQPLRVVVDGK---- 237 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNIN-------IIYCDCRDLKKLLTIL---VGR-GVT 288 A LAP + + ++D P++ + R + + D + K LT L +GR + Sbjct: 238 ARLAPPLKLLDSDGPLMLASLRGYDCHWPASVSVWPAADNGEGKVALTALLDELGRQQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +LVE G+A+A +FI++ L D + LY++ ++G Sbjct: 298 EVLVEAGSALAGAFISAGLWDELWLYQAPKLMG 330 >gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1] gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1] Length = 367 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13] Length = 367 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/328 (38%), Positives = 189/328 (57%), Gaps = 10/328 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-E 65 D +M A+ ++ G TS NP V ++VK+G ++G G G HAEV A++ AG + Sbjct: 3 DQYYMKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMAGVD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A G+T YVTLEPCSH+G++PPC+ +I+ + RVV+ DP+ V+GRG++ L + GI Sbjct: 63 KANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGIE 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ + E + L+ ++ + +TLK A S D S ITG S+ VH Sbjct: 123 VELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R Q DAILVG+GTVLADDP L RL NG + +P+RIILD H + LDSK++ T A Sbjct: 183 QYRHQHDAILVGVGTVLADDPSLDTRLPNGGK--NPIRIILDSHLRTPLDSKVL-TDGKA 239 Query: 244 PVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P IVT + + +AF + + + + ++ +LL++L +TSL VEGGA V Sbjct: 240 PTWIVTGSKPDLEKMAFLEGQEGVRVFTLPMEKVEVNELLSLLGEEEITSLFVEGGATVN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ + + +I Y + +IG P+ Sbjct: 300 GSFLKEKAIQQLITYIAPKLIGGKAAPT 327 >gi|307137057|ref|ZP_07496413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli H736] Length = 361 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LLRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 55989] gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli 55989] Length = 367 Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D ++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2] gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2] Length = 367 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQKH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dechloromonas aromatica RCB] gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dechloromonas aromatica RCB] Length = 367 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 119/326 (36%), Positives = 181/326 (55%), Gaps = 9/326 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL Sbjct: 1 MSFSAVDHGMMARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE A+G TAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ VSG+GL L Sbjct: 61 RSAGERAKGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + +++R R + LK+A S D + S ITG + Sbjct: 121 AAGIETASGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP+L+ R + P+R+++D + ++++I++ Sbjct: 181 RRDGHAWRARACAILTGIGTVRDDDPQLSVR-DVATTRQPLRVVVDSKLETPVNARILQG 239 Query: 240 ALLAPVII--VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295 PV+I EN+ + +L ++ I+ DL LL L RG+ + E G Sbjct: 240 ---GPVLIAGAVENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG 321 + S + LVD ++LY + +IG Sbjct: 297 FKLNGSLLREGLVDELLLYLAPCLIG 322 >gi|330830923|ref|YP_004393875.1| pyrimidine deaminase/reductase RibD [Aeromonas veronii B565] gi|328806059|gb|AEB51258.1| Pyrimidine deaminase/reductase RibD [Aeromonas veronii B565] Length = 369 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 35/343 (10%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D ++MS AL +R T+ NP V ++VKDG+V+G G G PHAEV AL A Sbjct: 3 SQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ +V GRGL+ LS+ G Sbjct: 63 GDNARGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I D ++ SE + + R +T+K+ S D MA S IT ++ Sbjct: 123 IKTDFGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V LRA+ DA+L TVLAD LT R + L P+R+I+D +L+ Sbjct: 183 VQRLRARHDAVLSSAETVLADGASLTVRWDELPPSVKVSYPKETLRQPLRVIVDSQNRLT 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRK---------KNINIIYCDCR-DLKKLLTI 281 P + + +N+ PVL LA K + + + D + DL L + Sbjct: 243 ------------PELPLFQNESPVL-LARHKASGEWPEWVQQLELPLLDGKLDLVSLFML 289 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L + V S+LVE G + + + LVD ++LY++ ++G+ G Sbjct: 290 LAKQNVNSVLVEAGPRLCGALLEKGLVDELVLYQAPKLMGDEG 332 >gi|59711307|ref|YP_204083.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Vibrio fischeri ES114] gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Vibrio fischeri ES114] Length = 372 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 184/341 (53%), Gaps = 24/341 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ ++ + T+ NP+V C++VK+G +IG G G PHAEV AL Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLD 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++E++ + +LTR + + LK+A S D + S IT + Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHF 228 + V RAQS AIL TV+ DD L R + L QE PMR ILD Sbjct: 181 RQDVQRYRAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--- 285 L+ D K+ + A V I ++N P+ + N + C D + L +V + Sbjct: 241 SLTSDLKLFQ-ASDEVVTISSQNTHPI------GTSENHMQCRVDDGQLDLKEVVNKISR 293 Query: 286 --GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE GA +A S IN LVD +I+Y + ++G G Sbjct: 294 DFNVNHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADG 334 >gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33] gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33] Length = 369 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 199/363 (54%), Gaps = 17/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI V Sbjct: 66 AKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIEDAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 126 KLGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNI--NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 II+T ND+ L KN+ I+ + + +K +L L + S+L+EGG+ Sbjct: 245 DGKAIIITSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGSG 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351 + + ++D+ ++ + +IG+ P G+ N V + + +G ++ Sbjct: 305 LISTAFKENIIDAAEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363 Query: 352 LEY 354 +E+ Sbjct: 364 IEF 366 >gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114] gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114] Length = 367 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 204/364 (56%), Gaps = 16/364 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARED 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R L++ P RI+LD ++ LD ++ T Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLV-TDT 239 Query: 242 LAPVIIVTENDDPVLALAFRK-KNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGG 295 +P +IVT + D A R ++I II + + R +L L+ L G +LVE G Sbjct: 240 ESPTVIVTLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + +A +F+ LVD I+LY++ ++G G PL L +N + D +E I Sbjct: 300 STLASAFLKDDLVDEIVLYQAPKLLGAG---KPLFS--LSENPAVLLSDSPWQSQSVEII 354 Query: 356 GKNL 359 G+++ Sbjct: 355 GQDI 358 >gi|88608126|ref|YP_506383.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str. Miyayama] gi|88600295|gb|ABD45763.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str. Miyayama] Length = 372 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/321 (37%), Positives = 175/321 (54%), Gaps = 22/321 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE AL+ AG +ARG Sbjct: 13 YMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARG 72 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 A Y TLEPC+H+GR+ PC IIE GI+ V + DPD RV+G+G+Q L + GI+V Sbjct: 73 ADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQKLQESGIVVTTG 132 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ E + Y RQV + + LK A + D I S IT + H+LR Sbjct: 133 ILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITSPAMRRTAHMLRR 192 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 S ++++ T+ DDP+L+CRL G+++ S ++++LD ++S +P + Sbjct: 193 MSSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEIS-----------SPNFKI 240 Query: 249 TENDDPVLALA----FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 ND V + F+ KN + DL+ +L L G+ S+LVE G + Sbjct: 241 F-NDGIVWSFGKRNIFKHKNFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECGGKLFS 299 Query: 301 SFINSRLVDSIILYRSQIVIG 321 SFI L D II +RS V G Sbjct: 300 SFITGDLFDQIIWFRSNKVAG 320 >gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans DSM 684] gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans DSM 684] Length = 364 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/356 (35%), Positives = 192/356 (53%), Gaps = 14/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G T+ NP V +IV+DG V+GRG G PHAEV AL +A ++ARGA Sbjct: 1 MQIALDLARKALGRTTPNPPVGAVIVRDGQVVGRGFHPKAGEPHAEVFALRDAADQARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 AYVTLEPCSH+GR+PPC + +I G+ RV V + DP+ +VSG+G++ L G+ V+ + Sbjct: 61 DAYVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E++ + + ++ + R LK A++ D S IT S+ VH LR Q Sbjct: 121 LETQCRRLIAPFIKHMISGRPLFILKSALTLDGRTATRTGHSQWITSARSREHVHRLRDQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG GT L D+P LT RL H P+RI++D +L S +I +P +VT Sbjct: 181 VDAIMVGSGTALRDNPRLTTRLTP-PGHDPIRIVVDSRLQLPETSHLINHQSASPTWVVT 239 Query: 250 -ENDDPVLALAFR-KKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 DP A + + ++ DL L +L R + S+LVEGG+ + S Sbjct: 240 VAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLGQRDIQSVLVEGGSVLNQSL 299 Query: 303 INSRLVDSIILYRS-QIVIGEGGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE 353 ++ L+D +++Y + +++ G G +G + RD+ G DV LE Sbjct: 300 FSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQLRDFRVTCLGDDVLLE 355 >gi|320354106|ref|YP_004195445.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfobulbus propionicus DSM 2032] gi|320122608|gb|ADW18154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfobulbus propionicus DSM 2032] Length = 368 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 199/365 (54%), Gaps = 17/365 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL +R +G TS NP+V ++VKDG V+GRG G PHAEV AL +AG +ARG Sbjct: 8 YMELALAEARKGLGRTSPNPAVGAVVVKDGKVVGRGYHHRAGTPHAEVHALADAGPQARG 67 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPC+H GR+PPC + I+ GI VV+ + DP+ RV+G G +L Q+G+ +V Sbjct: 68 ATIYVTLEPCNHTGRTPPCTEAILAAGIAMVVIGMADPNPRVAGGGAAYLRQRGLEVVSG 127 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E + + ++ + +K +S D I +TG S VH LR Sbjct: 128 VLEQPCRALNYPFIKHSTTGLPWVMMKAGLSLDGKITFRSRQGAALTGEESWRFVHRLRN 187 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q+DAIL+G+ T + DDP LT RL G+ + P+R++LD +L ++++ A + Sbjct: 188 QTDAILIGVETAIIDDPSLTTRLEGVADTRDPVRVVLDSCLRLPPQARMLHQRSTAETWV 247 Query: 248 V------TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 V ++ ++ ++ R + + DL +L +L R +TS+LVEGGA + + Sbjct: 248 VCGSEASSDREEQLVRAGARVLRLALGADGRVDLPAMLRLLGARNLTSVLVEGGAGIHGA 307 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG--SDVCLEYIGKNL 359 RLVD ++L+ + ++G+ G P L + RRD +DV L+ +G + Sbjct: 308 MYGQRLVDELLLFYAPFIVGDQGTP-------LVSGYSLARRDQAPRLADVALQPLGNDF 360 Query: 360 CLQEL 364 + L Sbjct: 361 LFRAL 365 >gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius LAA1] gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius LAA1] Length = 371 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 192/362 (53%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL +R G TS NP V ++V G+V+G+G G PHAEV AL AG+ Sbjct: 4 DERYMRMALEVARLGEGQTSPNPMVGAIVVNGGLVVGQGAHLMAGTPHAEVHALRMAGDA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L G+ V Sbjct: 64 AKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGLEV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + R R ++ K+A++ + + S +TG ++ VH Sbjct: 124 SVGVLEVEARELNRHFFHRVETGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR AI VG+GTVL DDPELT R ++ P+R++ D + ++++ TA Sbjct: 184 LRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDRQPLRVVFDTRLRTPPTARLL-TAPG 242 Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 +++ +E P + + ++ I+ R DL L+ + G +LLVEGG Sbjct: 243 RTLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGHLDLHAALSAIAAEGANALLVEGGP 302 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC------VRRDYFGSDV 350 +A + + SRL+D + +Y + ++ GG+P+ G ++ VR ++ G D+ Sbjct: 303 TLASALLQSRLIDEVRVYLAPKLLA-GGLPA--FAGAFTQSMSASVELHGVRSEWVGDDL 359 Query: 351 CL 352 L Sbjct: 360 VL 361 >gi|298488889|ref|ZP_07006913.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 366 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/338 (37%), Positives = 177/338 (52%), Gaps = 33/338 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI V + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + +L R + +I +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPFFQA 240 Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++VT E +LALA ++ DL+KL+ L RGV Sbjct: 241 ---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKLMGELATRGVN 289 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G +A +F LVD ++ + +G P Sbjct: 290 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 327 >gi|94498080|ref|ZP_01304643.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58] gi|94422515|gb|EAT07553.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58] Length = 317 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/315 (40%), Positives = 174/315 (55%), Gaps = 41/315 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ SR GL++ NP+V CLIV+DG V+GRG T GG PHAE QAL++A E+AR A Sbjct: 1 MAAAIALSRRGRGLSTPNPNVGCLIVRDGRVVGRGWTQKGGRPHAEAQALDQAMEQARDA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TAYVTLEPC H R P CA + G+ RVV+ + DPD R +G+G WL +G+ V+ Sbjct: 61 TAYVTLEPCFHLSPRGPRCADLLARAGVARVVIALRDPDPRTNGQGAAWLRDRGVAVEMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + ++ RQ R H+TLK+ +S D I +A S ITG ++ HL RA Sbjct: 121 LLADEAAAAMAGFVLRQTLGRPHVTLKLGLSLDGRIALANGSSRWITGPQARAHAHLERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ +P R++L +I AP I Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRAPRRLLLTRGPAPGNWERIG-----APEEIA 235 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T + V LLVEGGA A +F+ + L+ Sbjct: 236 TLDR----------------------------------VDHLLVEGGAGAAAAFLRADLI 261 Query: 309 DSIILYRSQIVIGEG 323 D ++LYR+ I+IG+G Sbjct: 262 DRLLLYRAPILIGDG 276 >gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM 19965] gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM 19965] Length = 378 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 179/338 (52%), Gaps = 18/338 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++MS AL ++ T TNP V ++VK+G V+G G G HAEV A + E Sbjct: 6 DEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVVGEGWHKKYGDVHAEVNAFKNCKEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L + GI + Sbjct: 66 TEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGIQV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E+E ++ E + + K A+S D I S I+ S+N VH Sbjct: 126 IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKISCYTGDSKWISSETSRNDVHY 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------NGLQE-----HSPMRIILDPHFKLSLDS 234 LR + AI+VG GT+ D+P LT R NG +E +P+RII+D +DS Sbjct: 186 LRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPIDS 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289 K+ + V++ T D F+ K I +IY + DL K L IL +G+ S Sbjct: 246 KVFQDG-GKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGINS 304 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +L+EGGA A N ++VD + +Y + I+IG PS Sbjct: 305 ILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPS 342 >gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM 2876] gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM 2876] Length = 360 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 191/362 (52%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V +IVKDG +IG G A G HAE A++ + Sbjct: 3 DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKDGRIIGEGYHAIYGDLHAERNAIKNLTVD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPC HYG+ PPC + I+ GI +VV+ DP+ VSGRG +L GI + Sbjct: 63 AKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++ M E IF H Y+T EK ++ +K A+S D I S +T S+N Sbjct: 123 IEDFMREECDELNPIFFH-YIT---EKTPYVVMKYAMSMDGKIATRTGSSRYVTNEFSRN 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R + I+ GIGTVLADDP L R+ GL+ SP+RII D ++ L+S+I +TA Sbjct: 179 EVQKMRHKYRGIMAGIGTVLADDPMLNTRIEGLR--SPVRIICDSELRIPLNSRICQTAG 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 II N A I ++ +L +L+ +L + S+L+EGG Sbjct: 237 EYETIIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMYVLHDMKIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + S + + LV+ I ++ + VIG SP+E ++ F + + F D+ L Sbjct: 297 LNESMLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDAVVFKLINVEKFDDDILL 356 Query: 353 EY 354 EY Sbjct: 357 EY 358 >gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W] gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W] gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli W] gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11] gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167] Length = 367 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D ++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. syringae 642] Length = 378 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 183/345 (53%), Gaps = 33/345 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ A+ +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPL 245 Query: 233 DSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 D+ + ++VT E +LALA ++ DL++L+ Sbjct: 246 DAPFFQA---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGE 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RGV +LVE G +A +F LVD L+ + +G P Sbjct: 295 LAARGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 339 >gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385] gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385] Length = 367 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143] gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143] Length = 367 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus NJ8700] gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus NJ8700] Length = 374 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 182/329 (55%), Gaps = 15/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA FM AL ++ + NP+V C++VK+G +IG+G A G PHAEV AL EAGE Sbjct: 9 DAEFMQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALREAGEN 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+HYGR+PPCA+ +++ G+R V+ + DP+ V+G+GL L+ GI Sbjct: 69 ARGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADAGIES 128 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + +L R R + LK+A+S D MA S ITG ++ V Sbjct: 129 AVGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARADVQQ 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 RA++ AIL TVLAD+P L R L ++H P+R+ILD K+ D Sbjct: 189 YRAKASAILSTSQTVLADNPSLNVRWAELPQEVQSRYAEQHLRQPVRVILDSAHKVRSDF 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVE 293 + T +PV + ++ + + + +I L+ L+T L R + +L VE Sbjct: 249 NLFLTD--SPVWLAGKDKFQLNGFPASTEYLQLIPNQGESHLQTLMTELGRRQINTLWVE 306 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322 GA +A + I LVD +I+Y + ++G+ Sbjct: 307 AGATLAGALIAENLVDELIIYMAPKLLGD 335 >gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri ATCC 29473] gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri ATCC 29473] Length = 369 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/332 (38%), Positives = 178/332 (53%), Gaps = 22/332 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 4 DEIYMARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMAGDA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ GIRRVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 EHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP L R L + P RIILD +++ Sbjct: 184 FRAQSSAILSTSATVLADDPSLIVRWTELDADTQRIYPELALRQPTRIILDSQNRVTPAH 243 Query: 235 KIIKTA---LLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++I+ LA V ++ D V L + Y + DL LL L R + S+ Sbjct: 244 QVIRQPGDCWLARVDADQQHWPDNVDQLLLPR------YGNGVDLVLLLMQLGKRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE G +A + + + +VD +ILY + ++G+ Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYVAPKLLGD 329 >gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453] gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453] Length = 366 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 10/338 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C+IVK+G + G G G PHAE+ AL AG + Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVIVKNGALAGVGTHLERGTPHAEIHALNMAGTK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YVTLEPCSHYG +PPC++ +I G++RVVV +DP+ V+G+G+Q L GI + Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ A++ + +TLK A + D I S I+ S+ VH Sbjct: 126 VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLDGKIASKTGDSKWISSEESRELVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL+ H P+RII+D ++ LDS ++ Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRLSVGGLH-PVRIIVDSSLRMPLDSHVVSDGTAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D ++ I +I C DLK + L G++S+L+EGG + + Sbjct: 245 ILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIAKLGQMGISSILLEGGGTLNGAM 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKN 337 + +LVD +I + + +I GG +P + GY + N Sbjct: 305 LEQKLVDRLIQFIAPKII--GGYDAPGNFMFSGYEQMN 340 >gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum alkenivorans AK-01] gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum alkenivorans AK-01] Length = 372 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 179/329 (54%), Gaps = 12/329 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G TS NP V +IVKDG VIG+G G PHAE+ ALEEAG + Sbjct: 5 DTQYMRQALALAEKGTGNTSPNPMVGAVIVKDGKVIGQGWHKKAGGPHAEIFALEEAGAD 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+H+G++PPC+ +++ GI +V+ + DP+ + G GL++L + G+ Sbjct: 65 AKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPKAQG-GLKYLQENGVET 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+E + ++ R + K A + D I S ITG S+ VH Sbjct: 124 QWGVCEAEARKQNEFFIKHVTTGRPFVVCKCAATLDGRIATRIGDSKWITGEESRAYVHK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R DAILVGI TV DDP LT RL Q + P+R+ILD + +K+++ + Sbjct: 184 MRHAMDAILVGINTVRMDDPSLTARLEDGQGNDPLRVILDSRLSMDPSAKMLRQDSDSGT 243 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTI------LVGRGVTSLLVEGGAAV 298 +I P V A K I+ + ++ L + L RG+ SLL+EGG V Sbjct: 244 LIFCGPQAPEVKRDALEKAGAEIV--EAPEMSGFLNLDFICRNLGERGLNSLLIEGGGHV 301 Query: 299 AHSFINSRLVDSI-ILYRSQIVIGEGGIP 326 S + S +VD + + Y +I+ G+ G+P Sbjct: 302 HSSALKSGVVDKVCLFYAPKILCGDDGVP 330 >gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 369 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 15/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D ++MS AL +R T+ NP V ++VK G+V+G G G PHAEV AL A Sbjct: 3 SQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYALHAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V GRGL+ LS+ G Sbjct: 63 GDNARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I D ++ SE + + R +T+K+ S D MA S IT ++ Sbjct: 123 IKTDFGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V LRA+ DA+L TVLAD+ LT R + L P+R+I+D +L+ Sbjct: 183 VQRLRARHDAVLSSAETVLADNASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRLT 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 D ++++ PV++ ++ + ++ DL L +L + V S+L Sbjct: 243 PDLPLLQSE--GPVLLARHKASGEWPAWVQQLEVPLLDGKL-DLVSLFMLLAKQNVNSVL 299 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE G + + ++ LVD ++LY++ ++G+ G Sbjct: 300 VEAGPRLCGALLDKGLVDDLVLYQAPKLMGDEG 332 >gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAb1] Length = 373 Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLV 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus ES-1] gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus ES-1] Length = 363 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 185/323 (57%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D+++M+ ALR + + TS NP V C++VK V+G G G PHAEV AL Sbjct: 1 MNAADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GATAYVTLEPCSH+GR+PPCA ++ GI+RVV + DP+ +V+G+G+ L Sbjct: 61 AGKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ +ME + +++R + K+A S D +A S ITG ++ Sbjct: 121 GIGVECGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARC 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA+S A+L GIGTVLADDP+L R P+R++LD ++S ++I++ Sbjct: 181 DVQHWRARSCAVLTGIGTVLADDPQLNVR-EMPAARQPLRVVLDSELRISSQAEILRNG- 238 Query: 242 LAPVIIVTENDDPVLALAFRKKN-INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 A V D + AL+ R + + D + DL ++ L RG+ +LVE G + Sbjct: 239 HALVYTACTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELN 298 Query: 300 HSFINSRLVDSIILYRSQIVIGE 322 + + + LVD ++LY + ++G+ Sbjct: 299 GALLKAGLVDEMVLYLAPQLLGD 321 >gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354] gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 194/372 (52%), Gaps = 30/372 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEE--GYLEKNFMCVRRD 344 VE G +A + + + LVD +I+Y + ++G I LE+ L+ F +R Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIR-- 354 Query: 345 YFGSDVCLEYIG 356 + G DVCL +G Sbjct: 355 HVGPDVCLHLVG 366 >gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107] gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107] Length = 383 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 187/346 (54%), Gaps = 20/346 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+ ALR + + T NP V C++VK+ +I G G HAEV AL Sbjct: 1 MALTRDDHRFMARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A E+ARGATAYVTLEPC+H G++ PC+Q +I+ G+ RVV ++DP+ VSGRGL+ L+ Sbjct: 61 RIAAEQARGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLA 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E + + ++TR KR + K+A+S D MA S IT + Sbjct: 121 AAGIEVDGPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231 + V LRA S AI+ GIG+VL D+ +LT R L P+R+ILD +L Sbjct: 181 RADVQRLRAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLP 240 Query: 232 LDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLT 280 D+ I++TA + P+++V L ++ ++ R DL+ L+ Sbjct: 241 RDALIMQTADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVR 300 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L R +L+E GA +A +F+ L+D +++Y + ++G P Sbjct: 301 ELAQRQCNEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARP 346 >gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031] gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031] Length = 372 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 183/333 (54%), Gaps = 16/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+GATAYVTLEPC+HYGR+ PCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENAKGATAYVTLEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S IT +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 K+ T +PV +V+ +P F II LK+L+ L R + +L Sbjct: 245 PTHKLFLTH--SPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQINTLW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 301 VEAGANLAGSLIDAKLVDELIIYVAPKLLGDNA 333 >gi|197119395|ref|YP_002139822.1| bifunctional 2, 5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase/5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter bemidjiensis Bem] gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter bemidjiensis Bem] Length = 369 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/322 (37%), Positives = 192/322 (59%), Gaps = 7/322 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 + M AL +R +G T+ NP+V C+IV++G V+G G G PHAEV AL+ AG++A Sbjct: 7 KMMRLALAEARKGIGKTAPNPAVGCVIVRNGEVVGTGWHKKAGTPHAEVHALKAAGDKAA 66 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG+Q L GI V+ Sbjct: 67 GADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDAGIAVEV 126 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +++ E + ++ K ++ LK A++ D A S +T ++ +VH LR Sbjct: 127 GLLKEESRELNLPFIKWIQTKLPYVVLKSALTLDGKSATASGDSKWVTSDRARREVHRLR 186 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI+VG+GTV+ DDP LTCR+ G ++ P+R+I+D ++ L + I+ A +I Sbjct: 187 GRLDAIMVGVGTVVKDDPLLTCRVPGGKD--PLRVIVDSTLRIPLHAAILGVKSKAETVI 244 Query: 248 VTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T + D A + + I+ C D R DL L L RGV S+L+EGG+ +A + + Sbjct: 245 ATCSCDHAKMEALKAHGVEILTCCESDGRVDLADLFEKLGARGVQSVLLEGGSHLAGAAL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 + L+D +++ + ++G G+ Sbjct: 305 RAGLIDKCMIFLAPKLVGGAGM 326 >gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae CT 5369-93] gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae CT 5369-93] Length = 365 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/335 (35%), Positives = 178/335 (53%), Gaps = 26/335 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +A Sbjct: 3 TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L G Sbjct: 63 GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E++ + +L R + LK+A S D +A S IT ++ Sbjct: 123 IEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RAQ+ AIL TVLAD+ L R + L P+R+ILD +L Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR-GVTS 289 P + + + PVL +A + I + + DL++LL L + V Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQHNVNQ 290 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE G+ +A S I +LVD IILY + ++G G Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325 >gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42] gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42] Length = 350 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 18/338 (5%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYIMTKRPFVTIKSGVTLDGKIATFLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+R+ILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVTDEEAPTWIFTTSNHAAEKRKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY + Sbjct: 240 ESAGVKVFVISGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +IG PS +E + K +F V +DY Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 337 >gi|262274779|ref|ZP_06052590.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Grimontia hollisae CIP 101886] gi|262221342|gb|EEY72656.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Grimontia hollisae CIP 101886] Length = 373 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/335 (36%), Positives = 186/335 (55%), Gaps = 24/335 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD++ M A+ ++ + T+ NP+V C+I + ++G G G PHAEV AL A Sbjct: 3 SIFDSQMMLRAIELAKRGIYTTAPNPNVGCVITQGDDIVGEGFHFRAGEPHAEVYALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRG+Q + G Sbjct: 63 GEKACGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVCAMVDPNPKVAGRGIQRMRDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD +M+++ + ++ + LK+A S D +A S ITG ++ Sbjct: 123 IQVDVGLMQAQAEALNPGFIKVMKTGLPFVQLKLASSIDGRTALANGQSQWITGAEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V + RAQ+ AIL TVL D+P L R L E P+R+ILD H K+S Sbjct: 183 VQVFRAQAGAILSTSQTVLDDNPSLNVRWAQLPETVKSVYQQDDVRQPVRVILDTHRKVS 242 Query: 232 LDSKIIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRG 286 + + +L +IIVT DD P + +++ ++ + +D L L L +G Sbjct: 243 DSATLF--SLDGDIIIVTAKDDKPSV-----NESVTVLTVEQQDGHLNLNSTLRALAAKG 295 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + VE GA +A S +N+ LVD +I+Y++ ++G Sbjct: 296 IHHIWVEAGATLAGSLLNAGLVDEVIVYQAPKLMG 330 >gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora ATCC BAA-2158] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/334 (36%), Positives = 178/334 (53%), Gaps = 22/334 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 MM E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++I + +D D V L + Y D DL +L +L + + SL Sbjct: 243 RLISQPGETWLARTAGDDLDWPDNVSQLTVPR------YQDRLDLVAMLMLLGRKQINSL 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA A + + + +VD +I+Y + ++G+ G Sbjct: 297 WVEAGAQFAGALLQAGVVDELIVYLAPKLLGDAG 330 >gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella boydii Sb227] gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Shigella boydii Sb227] gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella flexneri CDC 796-83] gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 E G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WGEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus MB-451] gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus MB-451] Length = 367 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSGQAQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A ++ I + + DL +LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENADLCISAENGKLDLHELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli E24377A] gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A] Length = 367 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D ++ + Sbjct: 183 QRAQSYAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinomonas sp. MED121] gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinomonas sp. MED121] Length = 383 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 119/359 (33%), Positives = 186/359 (51%), Gaps = 16/359 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A++ +R + T NP V C++V+D ++ G G HAEV A+ A + +G Sbjct: 12 WMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVNAIANANGDTQG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPCSH G++ PCA+ +I+ + R+V + DP+ V+GRGL L + GI ++ Sbjct: 72 CTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEVIGP 131 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +ME+E ++ R E ++ LK+A+S D M S ITG ++ V LRA Sbjct: 132 VMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGPDARLDVQKLRA 191 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTAL 241 QSDAI+ GIG+V+ADDP +T R++ P RII+D + +SKI+ Sbjct: 192 QSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSIPPESKILYPCN 251 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + + E + A K +N+ Y DL + L +G+ +LVE GA Sbjct: 252 QVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQGINEVLVETGA 311 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F+ LVD ++LY + ++G P PL+ +F V G D+ L Sbjct: 312 VLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVNLSQLGKDIKL 370 >gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAO1] gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAO1] Length = 373 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus UPII 345-E] gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus UPII 345-E] Length = 378 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 18/338 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++MS AL ++ T TNP V ++VK+G VIG G G HAEV A + E Sbjct: 6 DEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVIGEGWHKKYGDVHAEVNAFKNCKEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L + GI + Sbjct: 66 TEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGIQV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E+E ++ E + + K A+S D S I+ S+N VH Sbjct: 126 IVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKTSCYTGDSKWISSETSRNDVHY 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------NGLQE-----HSPMRIILDPHFKLSLDS 234 LR + AI+VG GT+ D+P LT R NG +E +P+RII+D +DS Sbjct: 186 LRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPIDS 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289 K+ + V++ T D F+ K I +IY + DL K L IL +G+ S Sbjct: 246 KVFQDG-GKTVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGINS 304 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +L+EGGA A N ++VD + +Y + I+IG PS Sbjct: 305 ILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPS 342 >gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arsenophonus nasoniae] Length = 369 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/336 (38%), Positives = 185/336 (55%), Gaps = 18/336 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++FD +FMS AL ++ TS NP+V C+IV+DG V+G G G HAE+ AL+ Sbjct: 1 MTTFDKQFMSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYG++PPCA +I GI+RVVV + DP+ +V+GRGL L Q Sbjct: 61 AGEKANGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ E + +L R ++ LK+A S D +A S IT ++ Sbjct: 121 GIEVIHGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--------NGLQEHS---PMRIILDPHFKL 230 V RAQ+ AIL TVLAD+P L R N E S P+RI+LD + ++ Sbjct: 181 DVQSFRAQASAILTTSATVLADNPALNVRWKDFAPELQNIYPEESLRQPIRIVLDRNNQV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRK-KNINI-IYCDCRDLKKLLTILVGRGVT 288 + + K+A +I +P+ F K I I Y DL L+ L R + Sbjct: 241 KPEHFVTKSAGECWLI----RSNPIAQNWFGDVKQITIPTYGKGIDLVLLMMQLAKRNIN 296 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE G +A + + LVD +I+Y + ++GE Sbjct: 297 SIWVESGPTLAGTLLTLGLVDELIVYVAPKILGESA 332 >gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa UCBPP-PA14] Length = 373 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLV 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603] gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603] Length = 379 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 176/324 (54%), Gaps = 4/324 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKD ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDSNIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G + L + I + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPLVSGNGKRKLEEAAIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + K+ +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKQPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ +H P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNGGKH-PIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + + I+ Y S +IG P+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPT 334 >gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Psychromonas ingrahamii 37] gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychromonas ingrahamii 37] Length = 387 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 182/339 (53%), Gaps = 23/339 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M+ A+ ++ +S NP+V C+IV + I++G G G HAEV AL A Sbjct: 7 SDLDKYYMAHAILLAKKGRFTSSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAIA 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A GAT YVTLEPCSH+GR+PPCA + + GI+RV++ + DP+ +V+G G++ L + G Sbjct: 67 KDKAMGATCYVTLEPCSHFGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKAG 126 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++++E ++ R K +T+K+A S D + S ITG ++ Sbjct: 127 IKVDLGLLKNEAMDLNRGFIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARCD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRIILDPHFK 229 V RA A+L G TV+AD+P L R L+ H P+RIILD H K Sbjct: 187 VQYFRALQSAVLTGSATVIADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHNK 246 Query: 230 LSLDSKIIKTALLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL 282 ++L K+ +L V++V+ +D P F +I D +LK LLT L Sbjct: 247 ITLKEKLF--SLEGKVLLVSLLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQL 304 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + L VE GA +A F N +LVD ILY++ ++G Sbjct: 305 SDYEINDLWVEAGATLAGEFFNHQLVDQFILYQAPKLMG 343 >gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591] gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591] Length = 367 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++ +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2] gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa LESB58] gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa LESB58] Length = 373 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 180/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831] gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase : 5-amino-6-(5-phosphoribosylamino) uracil reductase) [Oceanobacillus iheyensis HTE831] Length = 367 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 192/360 (53%), Gaps = 15/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G T NP V +IV ++G G G PHAE+ AL+ AGE Sbjct: 4 DKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHNRIVGVGSHLKAGEPHAEIHALQMAGEN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH GR+ PCA ++E G+RRVV+ DP+ V+G G++ L GI V Sbjct: 64 AKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGIEV 123 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + I ++ + + K+ IT+K A + D + S IT ++ VH Sbjct: 124 EVGVLEDESISMNEVFNKFITHKQPFITMKAASTLDGKVATKTNHSKWITSEAAREDVHH 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + AILVGI T++ DDP LT R+ NG +P+RI+LD ++ LD++II+ Sbjct: 184 LRNEHAAILVGIQTIIHDDPALTTRIPNG---RNPIRIVLDSSLRIPLDAQIIQDKRAPT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I E D + II + D++ ++ L + ++SLL+EGG + S Sbjct: 241 MIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVNHLGNQQISSLLLEGGGNIHAS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 F+ + LVD ++LY + + G P+ E +E+ + + ++ D G D +IG Sbjct: 301 FLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDSIDLLNLKIDQIGPD--FRFIG 358 >gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum ferrodiazotrophum] Length = 397 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 194/382 (50%), Gaps = 34/382 (8%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P D R+M AL + + NP V ++V+DG V+G G G HAEV AL Sbjct: 5 PGEPADRRWMQRALVLAEKGRDTVAPNPMVGAVVVRDGKVVGEGYHREAGQEHAEVLALR 64 Query: 62 EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARGAT YV LEPC H R+PPC + I++ G+ RVVV + DP+ RV GRGL+ L+ Sbjct: 65 AAGDRARGATLYVNLEPCCHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLA 124 Query: 121 QKGIIVDRMMESEGKIFLHAY--------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 + R+ SEG A+ L RQ R ++TLK A+S D I + S Sbjct: 125 GQ-----RLDVSEGLFAARAFEQNRGFSSLIRQ--GRPYVTLKGAMSLDGKIATSTGDSQ 177 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+G S H LR DAILVGI T + DDP LT RL G + H P R+ILD +L Sbjct: 178 WISGSRSLAYAHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQPARVILDSTGRLPP 237 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR----DLKKLLTILVGRG 286 DS++ PV +V P +L +K+ ++ + R DL+ LL +L G Sbjct: 238 DSRLFGEEGGGPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEIDLRALLAVLAEEG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNF 338 + ++LVEGG+ V SF+ + LVD I + + ++IG G P L F Sbjct: 298 LLTVLVEGGSRVNASFLAAGLVDRIRVVLAPLLIGGTDAIGWLGGASPPTLARARRLPGF 357 Query: 339 MCVRRDYFGSD--VCLEYIGKN 358 +RR G D V ++ G N Sbjct: 358 SVIRR--LGDDLLVGADFWGPN 377 >gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 379 Score = 196 bits (498), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%) Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 +P +SF D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE Sbjct: 8 LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 67 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG Sbjct: 68 RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 127 Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 L Q G+ +V+ +++ E IF H T KR ++ +K A++ D I S Sbjct: 128 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 183 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 ITG ++ +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + Sbjct: 184 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 LD ++++TA +I T +DD FR ++++ C R DL+ LL L + Sbjct: 242 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 301 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342 SLL+EGG+++ S + S +V+ + Y + ++G +P+ +++ V+ Sbjct: 302 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 361 Query: 343 RDYFGSDVCLEYI 355 + G D+ L+Y+ Sbjct: 362 TELIGEDILLDYV 374 >gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium rectale M104/1] Length = 388 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 188/358 (52%), Gaps = 40/358 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 63 PQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++++ E ++F + TR R ++ +K A++ D I S ITG ++ Sbjct: 123 VTQVLKDECDRLNEVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA Sbjct: 179 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 236 Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273 P I+ TE D ++K I I+Y + Sbjct: 237 EVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 296 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E Sbjct: 297 IDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 354 >gi|282850242|ref|ZP_06259621.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC 17745] gi|282579735|gb|EFB85139.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC 17745] Length = 403 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 181/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI + Sbjct: 63 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E + T + +TLK A+S D I + S IT S+ H+ Sbjct: 123 VCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGHV 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229 LRA DA+LVGIGT+LAD+P+L CRL L E H P IILD + Sbjct: 183 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 242 Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274 S++ + I V++ D + AL + RK I D + Sbjct: 243 TPTTSRVFEINNRKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIKK 302 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG Sbjct: 303 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 351 >gi|8039802|sp|P50853|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase Length = 376 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%) Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 +P +SF D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE Sbjct: 5 LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 64 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG Sbjct: 65 RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 124 Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 L Q G+ +V+ +++ E IF H T KR ++ +K A++ D I S Sbjct: 125 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 180 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 ITG ++ +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + Sbjct: 181 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 238 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 LD ++++TA +I T +DD FR ++++ C R DL+ LL L + Sbjct: 239 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342 SLL+EGG+++ S + S +V+ + Y + ++G +P+ +++ V+ Sbjct: 299 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 358 Query: 343 RDYFGSDVCLEYI 355 + G D+ L+Y+ Sbjct: 359 TELIGEDILLDYV 371 >gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli 1180] Length = 361 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 ----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 T +E + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|307825581|ref|ZP_07655799.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum SV96] gi|307733467|gb|EFO04326.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum SV96] Length = 361 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 184/325 (56%), Gaps = 13/325 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ A+ ++ T NP V C++V+DG VIG+G G HAEV+AL+ + Sbjct: 6 DAFYMAQAISLAKKGRYTTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEALKNV-PD 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH GR+PPC +I+ G+ RVV + DP+ +VSG GL+ L GI + Sbjct: 65 AKGATAYVTLEPCSHQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLKVAGIEV 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ + ++ R + R + K+A+S D MA S IT ++ VH Sbjct: 125 ICGVLQEDALALNRGFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEARADVHR 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LRA+S AIL GI TVLADDP L R++G LQ P+R++LD H + + +++ K L Sbjct: 185 LRAESSAILTGINTVLADDPALNARVDGDVLQ---PVRVVLDTHLNMPVTAQMAK--LPG 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I+T D A ++ + C+ DL+ ++ L + + LLVE G+ + Sbjct: 240 RSLILTCAQDEQKQGALQQVGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSVLN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG 324 + ++ VD ++Y + ++G+ G Sbjct: 300 GALLDEDWVDEYVIYMAPCILGDQG 324 >gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99] gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99] Length = 380 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 23/339 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL A + Sbjct: 6 DTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAMATQR 65 Query: 67 A------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ RVSGRG+ L Sbjct: 66 ADGLADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGINMLK 125 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++ E ++ R +T+K+A S D ++ S ITG S Sbjct: 126 DAGIKVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWITGPES 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229 + V LRA+S A++ GI TVL DDP L R L L + P+R+ILD + Sbjct: 186 RRDVQRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILDSRAR 245 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN-IIYCDCRDLKKLLTIL---VGR 285 L+ +K+ A+ +P+++V+ D P ++++ + D + LT L +G+ Sbjct: 246 LTSSAKLF--AITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFSHLGK 303 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+L+E GA +A S I+ D +ILY++ ++G G Sbjct: 304 TCNSVLIEAGATLAGSVISHNHADELILYQAMKLLGANG 342 >gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 39016] gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 39016] Length = 373 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1] gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1] Length = 384 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 201/368 (54%), Gaps = 20/368 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A++ ++ T NP V C++VKD +IG+G G HAEV AL +A +A G Sbjct: 9 WMAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAKHDAVG 68 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSH G++PPCA +I+ G+ RVV + DP+ VSG GL + + GI I+ Sbjct: 69 ATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEIIGP 128 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ES+ + ++ R E ++ +K+A+S D M S IT ++ V LRA Sbjct: 129 ILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQRLRA 188 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQE------HSPMRIILDPHFKLSLDSKIIKTAL 241 QSDAI+ GIG+VLAD+P +T R+ N QE P+R+++D + ++KI+ A Sbjct: 189 QSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILYPAN 248 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLVEGGA 296 A V V E + KK + + + D R DL + L G+ +L+E GA Sbjct: 249 QAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLEAGA 308 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLE--EGYLEKNFMCVRRDYFGSDVC 351 +A F+ + L+D II+Y + ++G P PL+ + ++ VR+ G DV Sbjct: 309 ELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDVMDEAVDLTLKSVRQ--VGQDVR 366 Query: 352 LEYIGKNL 359 L YI K L Sbjct: 367 LVYIPKYL 374 >gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PA7] gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7] Length = 373 Score = 196 bits (497), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 181/346 (52%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++V+DG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGEKARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVHSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|294791895|ref|ZP_06757043.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27] gi|294457125|gb|EFG25487.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27] Length = 404 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 130/349 (37%), Positives = 181/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 4 DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI + Sbjct: 64 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E + T + +TLK A+S D I + S IT S+ H+ Sbjct: 124 VCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGHV 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229 LRA DA+LVGIGT+LAD+P+L CRL L E H P IILD + Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 243 Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274 S++ + I V++ D + AL + RK I D + Sbjct: 244 TPTTSRVFEINNCKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIKK 303 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG Sbjct: 304 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 352 >gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 369 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 120/328 (36%), Positives = 186/328 (56%), Gaps = 10/328 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKIIK 238 V RA++ AIL G GTV+ADDP +T R+ E S P+R++LD + +L + I+ Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMG---EDSPVVPPLRVVLDAGLR-TLACRNIR 244 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + D +L + ++ DL +L +L RG+ + VEGGA + Sbjct: 245 QG-DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + + + LVD +++Y + +++G+ P Sbjct: 304 SGALLQAGLVDELLVYVAPVLLGDSAKP 331 >gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ruegeria sp. TM1040] gi|99038255|gb|ABF64867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ruegeria sp. TM1040] Length = 358 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 183/323 (56%), Gaps = 7/323 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL R G T NP+V C+IV+ G V+GRG T GG PHAE AL +AG ARGA Sbjct: 1 MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPC+H+G++PPCAQ +IE G+ RVV ++D D RVSG+G + L GI V + Sbjct: 61 TAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGV 120 Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E F H + + + R +TLK+A S D I S ITG ++ VH +RA+ Sbjct: 121 RAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT ADDP LT R G+ + P R+++ H L L SK+ ++A P+ + Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGIDQQ-PARVVVSRHLDLPLISKLARSAAEVPLYLCH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ +++ C+ D +L L G+T + EGG A+A S + Sbjct: 240 GTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSVGLTRVFCEGGGALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 LVD ++ + + + IG G+PS Sbjct: 300 HDLVDELVGFSAGLTIGAEGLPS 322 >gi|110679096|ref|YP_682103.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh 114] gi|109455212|gb|ABG31417.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh 114] Length = 365 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/326 (39%), Positives = 181/326 (55%), Gaps = 7/326 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +R+M+ AL R G NP+V C+IVKDG +IGRG T GG PHAE QAL +A +A Sbjct: 5 SRYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPC+H+G++PPCA+ ++ G+ RV DPD RV G G + L Q GI V Sbjct: 65 RGADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQ 124 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E++ + + R R +TLK+A S D I S ITG ++ VH L Sbjct: 125 SGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRVVHAL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DA++VG GT DDP LT R G P R+++ + L + +TA PVI Sbjct: 185 RARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVI 243 Query: 247 IVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + D DP L ++ ++ C R D ++ L G G+T + EGG+A+A S Sbjct: 244 LCHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAAS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 + LVD +I + + + IG G+PS Sbjct: 304 LFEADLVDELIGFTAGLAIGAEGLPS 329 >gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas vesicatoria ATCC 35937] gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas vesicatoria ATCC 35937] Length = 364 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 208/367 (56%), Gaps = 11/367 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+++D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 1 MNVTAYDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V +++++ + +L+R R + +K+ S D +A S ITG + Sbjct: 121 EAGIEVVSGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238 + V RA++ AIL G GTVLADDP +T RL P+R++LD + +L+ + I+ Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLR-TLECEHIR 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 AP + + N PV +L + + + + R DL +L +L RG+ + E GA Sbjct: 240 QG-DAPTLYLHGNAVPVPSLQ-NAEFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGAT 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ++ + + + LVD +++Y + +V+G+ PL G L + M RR +DV +G+ Sbjct: 298 LSGALLQAGLVDELLVYFAPVVLGDAA--RPLLAG-LGIDTMAQRRTLHLADV--RQLGQ 352 Query: 358 NLCLQEL 364 +L L+ L Sbjct: 353 DLRLRYL 359 >gi|325295467|ref|YP_004281981.1| riboflavin biosynthesis protein RibD [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065915|gb|ADY73922.1| riboflavin biosynthesis protein RibD [Desulfurobacterium thermolithotrophum DSM 11699] Length = 362 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 123/324 (37%), Positives = 185/324 (57%), Gaps = 7/324 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM A+ + G T NP+V +IVKDG VI G G PHAE A+ +AGE+ Sbjct: 4 DEKFMKLAISEAYKAKGRTLPNPAVGAVIVKDGKVIATGYHERAGLPHAESVAISKAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+HYG++PPC++ II+ GI+RVVV + DP+ G G++ L GI V Sbjct: 64 AKGATLYVTLEPCNHYGKTPPCSEKIIKAGIKRVVVGIRDPNPVARG-GVEKLKNAGIEV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + ++ EKR ++LK+A + D I S IT S+ VH+ Sbjct: 123 KVGVLEKECFELIDDFIVNLKEKRPFVSLKLAATLDGKIADYKGNSKWITSEESRKLVHI 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+ +A++VGIGTVL DDP L R + P I++DPH K+ L ++IK+ + Sbjct: 183 LRSYHNAVMVGIGTVLKDDPLLNVR-KVPADVQPKAIVVDPHLKIPLSCRLIKSRSEDLI 241 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301 II T E+ AL + K + ++ + +LK L L G G+ S++ EGG+ +A S Sbjct: 242 IITTRESMLSDKALILKGKGVKLLEAGENSIELKIALEKLKGEFGIYSVMCEGGSKLAWS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGI 325 + L+D L+ + ++G G+ Sbjct: 302 LLEGNLIDKFYLFYAPKILGGKGM 325 >gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681] gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681] Length = 366 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 128/325 (39%), Positives = 179/325 (55%), Gaps = 10/325 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AGE A+ Sbjct: 6 KYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHAQ 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI ++ Sbjct: 66 GATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVIV 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E + V KR IT+K AV+ D I S IT ++ VH LR Sbjct: 126 GVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRLR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + ILVG+ TV+ D+P+LT RL + +P+RIILD ++ LD+++I T AP I Sbjct: 186 NEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVI-TDGEAPTWI 242 Query: 248 VT-----ENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 T E L L + + +L ++L IL V+S+ VEGGA V S Sbjct: 243 FTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 F+ L D ++LY + ++G P Sbjct: 303 FVQQGLADRLVLYIAPKLVGGRAAP 327 >gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto BEST195] Length = 361 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/325 (37%), Positives = 169/325 (52%), Gaps = 12/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG A G Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 65 ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVREG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 I+ ES + FLH T ++TLK A S D I + S IT ++ Sbjct: 125 ILADQAESLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + ++ +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + II Y + +IG PS Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324 >gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703] gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703] Length = 372 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 200/363 (55%), Gaps = 14/363 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ VSG+GL L G Sbjct: 63 GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARED 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R L++ P RI+LD ++ LD ++ Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L + ++I II + + R +L L+ L G +LVE G+ Sbjct: 241 SPTVIVTLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + +F+ LVD I+LY++ ++G G PL L +N + D +E IG Sbjct: 301 TLTSAFLKDDLVDEIVLYQAPKLLGAG---KPLFS--LPENPAALLSDGPWQSQSVEIIG 355 Query: 357 KNL 359 +++ Sbjct: 356 QDI 358 >gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3] gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3] Length = 367 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPLSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAKNGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae L20] gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae] gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 410 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 202/373 (54%), Gaps = 24/373 (6%) Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 +P +SF D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE Sbjct: 39 LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 98 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG Sbjct: 99 RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 158 Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 L Q G+ +V+ +++ E IF H T KR ++ +K A++ D I S Sbjct: 159 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 214 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 ITG ++ +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + Sbjct: 215 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 272 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 LD ++++TA +I T +DD FR ++++ C R DL+ LL L + Sbjct: 273 LDCQLVQTAKEYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQI 332 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342 SLL+EGG+++ S + S +V+ + Y + ++G +P+ +++ V+ Sbjct: 333 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 392 Query: 343 RDYFGSDVCLEYI 355 + G D+ L+Y+ Sbjct: 393 TELIGEDILLDYV 405 >gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3] gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3] Length = 350 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 184/338 (54%), Gaps = 18/338 (5%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH+ Sbjct: 3 GQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSHH 62 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PCA+ I++ GI++VVV DP+ VSG G++ L GI ++ + E E K + Sbjct: 63 GRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEVF 122 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 123 NKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTVQ 182 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ NG +P+R+ILD ++ +++ ++ I T N A Sbjct: 183 KDNPSLTTRIPNG---RNPIRVILDSTLRIPMEANVVADREAPTWIFTTSNYAAEKRKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGEVNASFIENKLMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEK----------NFMCVRRDY 345 +IG PS +E + K +F V +DY Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFKDISFTQVGKDY 337 >gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 356 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 185/325 (56%), Gaps = 7/325 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ ++ +G T+ NP V +IVK+G +IG G Y G PHAE+ AL+ E+ GA Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKEDVIGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC HYG++PPC I++ GI+ V + ++DP+ VSG+G++ L + G+ + + Sbjct: 61 QLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVYTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + ++ K+ ++ LK A++ D I S IT S+ VH++R Sbjct: 121 LKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIMRGC 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ D+P LT R++G + +P+R+++D ++ L++ ++ ++ T Sbjct: 181 VMAIMVGVNTVIKDNPYLTARIDGFK--NPLRVVVDSRGRIPLEANVVIDKSAKTIVATT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + A R +++ D DLKKL+ +L RG+ S+++EGG + +S + Sbjct: 239 DMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSALKE 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE 330 +VD ++ Y + +IG +P+E Sbjct: 299 GIVDKVMFYIAPKIIGGSNSLTPVE 323 >gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226] gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226] Length = 367 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVHQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1] Length = 376 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 124/339 (36%), Positives = 182/339 (53%), Gaps = 27/339 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI Sbjct: 68 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG +++ V Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L +VLAD+ +T R L +P+R+++D +LSL S Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLSLAS 247 Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + P ++VT DDP A L+ N + DL LL L RGV Sbjct: 248 PFFQA---GPALVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+E GA + +F LVD L+ + +G P Sbjct: 299 NEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 337 >gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str. 13] gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13] Length = 366 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 184/336 (54%), Gaps = 16/336 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGIEV 121 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++E E +IF + Y+ E R I LK A++ D I S IT S+ Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + +I T N D + + K I +I + ++ ++L L + + S+L+EG Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + +F+ ++ V+ I + + V G +P+E Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense YUAN-3] gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense YUAN-3] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 179/332 (53%), Gaps = 15/332 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VKDG VIG G G HAE AL E Sbjct: 3 DETYMKLALEYAEKGCGWVNPNPMVGAVVVKDGRVIGTGWHRRYGELHAERNALASCTEP 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YVTLEPC HYG++PPC I+E GI RVVV DP+ V+G+G++ L Q+GI V Sbjct: 63 PQGATLYVTLEPCCHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGIEV 122 Query: 127 DRMMESEG-----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + ++F H TR ++ +K A++ D I S ITG ++ Sbjct: 123 AEGVLGDACTGINEVFFHFIRTRM----PYVVMKYAMTMDGKIATCSGQSKWITGETARR 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 + R + I+VGIGTVL DDP LTCRL +P+RI+ D + L+++I++ Sbjct: 179 RTQEDRHRYSGIMVGIGTVLTDDPLLTCRLP--DGRNPVRIVCDSRLRTPLNAQIVRITG 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 AP I+VT + D LA +R ++ + DL+ L+T L +G+ S+L+EGG A Sbjct: 237 EAPTILVTCSRDEALAYPYRDAGCEVLTLPAKDGHVDLRALMTALGKKGIDSVLLEGGGA 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + S + S +V+ + Y + + G SP+ Sbjct: 297 LNWSALQSGIVNKVQAYVAPKLFGGINAKSPV 328 >gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans Nor1] gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans Nor1] Length = 379 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 118/314 (37%), Positives = 177/314 (56%), Gaps = 10/314 (3%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS NP V +IVKDG ++G G G PHAE+ A+ +AG+ A+ AT YVTLEPCSHY Sbjct: 19 GQTSPNPMVGAVIVKDGTIVGEGWHHRAGTPHAEIHAINQAGDLAKDATLYVTLEPCSHY 78 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PC Q I++ GI RVV + DP+ V+G+G ++L + G+ +++ ++ +E + Sbjct: 79 GRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEVIEGVLATEAAQLNEVF 138 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + K LK A+S D I S ITG ++ +VH R++ DAILVG+GTV+ Sbjct: 139 IKWITTKMPFGILKTAMSLDGKIATYTGHSRWITGLPARTRVHEWRSKYDAILVGVGTVV 198 Query: 202 ADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 AD+PELT RL NG +P+RI+ D + L++KI+ +I VT A Sbjct: 199 ADNPELTARLIPNG---KNPLRIVADSLARTPLNAKIVTDGKAPTIIAVTPEAPSDRIAA 255 Query: 260 FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + +I D DL+ L L R VTS+++EGG A+ S + + +VD + + Sbjct: 256 LKASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGGGALGASALAANVVDKVYWFI 315 Query: 316 SQIVIGEGGIPSPL 329 + +IG P P+ Sbjct: 316 APKIIGGRSAPGPI 329 >gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cronobacter sakazakii ATCC BAA-894] gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 173/327 (52%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP V C+IVK+G+++G G G PHAEV AL AG++ Sbjct: 3 DEFYMARALKLAGQGRFTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP +T R + L E + P+RI+LD +++ Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 KI+ + D + ++ ++ DL L+ L R V SL VE Sbjct: 243 KIVNQP--GETWLARACPDDTVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD +I+Y + ++G Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLG 327 >gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 369 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 10/328 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----PMRIILDPHFKLSLDSKIIK 238 V RA++ AIL G GTV+ADDP +T R+ E S P+R++LD + +L + I+ Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMG---EDSPVVPPLRVVLDAGLR-TLACRNIR 244 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + D +L + ++ DL +L +L RG+ + VEGGA + Sbjct: 245 QG-DAPTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + + + LVD +++Y + +++G+ P Sbjct: 304 SGALLQAGLVDELLVYMAPVLLGDSAKP 331 >gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium rectale DSM 17629] Length = 386 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 187/358 (52%), Gaps = 40/358 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 63 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++++ E +F + TR R ++ +K A++ D I S ITG ++ Sbjct: 123 VTQVLKDECDRLNDVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA Sbjct: 179 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 236 Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273 P I+ TE D ++K I I+Y + Sbjct: 237 EVPTIVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 296 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E Sbjct: 297 IDLNDLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 354 >gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1] gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. BAV1] gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1] gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. BAV1] Length = 365 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ D R DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +LVD ++++ + I+IG Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322 >gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911] gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911] Length = 371 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/323 (39%), Positives = 175/323 (54%), Gaps = 14/323 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R +G TS NP V ++VKDG + G G G HAEV A+ A Sbjct: 3 DEDYMDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGA YVTLEPCSH+G++PPCA IIE GI+RVV+ DP+ V+GRG+ L GI V Sbjct: 63 ARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIEV 122 Query: 127 D---RMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + R E+E F H T R ++T+K A S D S IT S+ Sbjct: 123 EVGIRREEAEEINSAFFHFMRT----SRPYVTIKAAASFDGKTAANTGDSQWITSPESRE 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR + DAIL G+ TV+ D+P+LT RL + +P+R+ILD ++ D+ I+ Sbjct: 179 DVHRLRHEHDAILTGVNTVIHDNPQLTARLPRGGK-NPIRVILDSTLRIPGDAAILHDQ- 236 Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAV 298 APVII T N D A + +++ ++ K+L L R + S+ VEGG+ + Sbjct: 237 KAPVIIFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEELGTRQILSVFVEGGSEI 296 Query: 299 AHSFINSRLVDSIILYRSQIVIG 321 SFI L IILY + +IG Sbjct: 297 HASFIKEGLFQQIILYAAPKIIG 319 >gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1] gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1] Length = 376 Score = 195 bits (495), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GLQ L++ GI Sbjct: 68 RAIGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQRLAEAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG +++ V Sbjct: 128 VASGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L +VLAD+ +T R L +P+R+++D +L LD+ Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSRLRLPLDA 247 Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + P ++V DDP A L+ N + DL LL L RGV Sbjct: 248 AFFQA---GPALVVAAVADDPRYAAAGHELLSLPGDNGQV------DLPALLQALAARGV 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+E GA + +F LVD L+ + +G P Sbjct: 299 NEILLEAGAGLVGAFAQQGLVDEYQLFVAGTFLGSQARP 337 >gi|70732823|ref|YP_262590.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] gi|68347122|gb|AAY94728.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] Length = 377 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/339 (37%), Positives = 178/339 (52%), Gaps = 28/339 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R T NP V C+IV+DG V+G G G PHAEV AL AGE Sbjct: 10 LDAHYMARALELARKGRYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGLQ L+Q GI Sbjct: 70 LARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGID 129 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E + +L R ++ +K+A+S D MA S ITG +++ V Sbjct: 130 THGGVLEGEARAINKGFLKRMEHGLPYVRVKLAMSLDGRTAMASGESQWITGPAARSAVQ 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDS 234 LRA+S +L G TVLADD LT R L P+R+++D ++ LD+ Sbjct: 190 RLRAESSVVLTGADTVLADDARLTVRAAELGLDAEQTALAMSRPPLRVLIDGRLRVPLDA 249 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGV 287 K P ++ T A ++ N C D + DL++LL L RGV Sbjct: 250 PFFKA---GPALVAT-------CAAVEEQYANGPECLIVPGPDGQVDLRRLLLELAARGV 299 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G +A +F LVD ++ + +G P Sbjct: 300 NEVLVEAGPRLAGAFAQQGLVDEYQIFVAGKFLGSSARP 338 >gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis Length = 373 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 170/330 (51%), Gaps = 12/330 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 72 AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131 Query: 125 -----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 I+ E + FLH T ++TLK A S D I + S IT + Sbjct: 132 EVREGILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAA 187 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + R +ILVG+GTV AD+P LTCRL + + P+R+ILD + D+K+I Sbjct: 188 RQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICD 246 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAA 297 + I T D +NI + ++ +L IL G+ S+ VEGG+A Sbjct: 247 QIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSA 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 V SF+ II Y + +IG PS Sbjct: 307 VHGSFVKEGCFQEIIFYFAPKLIGGTHAPS 336 >gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri] Length = 372 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 186/341 (54%), Gaps = 24/341 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L+ Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLN 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++E++ + +LTR + + LK+A S D + S IT + Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHF 228 + V RAQS AI TV+ D+ L R + L QE PMR ILD Sbjct: 181 RQDVQRYRAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLT-ILV 283 L+ D K+ + A V I ++N P++ + N I C D +LK+++ I Sbjct: 241 ALTSDLKLFQ-ASGEVVTISSQNTHPIVT------SENHIQCCVDDDQLNLKEVVNKISR 293 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE GA +A S I LVD +I+Y + ++G G Sbjct: 294 DFNVNHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADG 334 >gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656] gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656] Length = 394 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/358 (35%), Positives = 187/358 (52%), Gaps = 40/358 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 9 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 69 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 128 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++++ E +F + TR R ++ +K A++ D I S ITG ++ Sbjct: 129 VTQVLKDECDRLNDVFFYFIQTR----RPYVAMKYAMTMDGKIATYSGLSKWITGEKARE 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA Sbjct: 185 HVQNLRHRYKAIMAGIGTVLADDPLLTCRIEGGV--NPIRIICDTHLKLPLESQIVNTAK 242 Query: 242 LAPVIIV----------------TENDDPVLALAFRK---------KNINIIYCDCR--- 273 P I+ TE D ++K I I+Y + Sbjct: 243 EVPTIVAVSERYHETAQSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGH 302 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E Sbjct: 303 IDLNDLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIE 360 >gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908] gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908] Length = 379 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/344 (34%), Positives = 186/344 (54%), Gaps = 23/344 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D MS A++ +R + T NP V C++ KDG ++G G G PHAEV AL Sbjct: 1 MNWSVEDIEMMSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHAL 60 Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A + A+GATAYVTLEPCSHYGR+PPCA+ +I + RVVV V+DP+ +V GRG+ Sbjct: 61 AMANSDSNLGAKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGI 120 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI VD +++ E ++ R +T+K+A S D +A S IT Sbjct: 121 AMLRDAGIQVDVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILD 225 G ++ V LRA+ A++ G+ T+LAD+P L R + L H P+R++LD Sbjct: 181 GPEARRDVQRLRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLD 240 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLT 280 +++ D + A+ +P+++V+ +D P + ++ + +C DL +L Sbjct: 241 SRARVTSDLALF--AIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFK 298 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L G+ S+L+E GA +A S I D ++LY++ ++G G Sbjct: 299 YL-GKQCNSVLIEAGATLAGSVIAKGHGDELVLYQALKMLGSSG 341 >gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora CFBP1430] gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946] gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Erwinia amylovora ATCC 49946] gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora CFBP1430] Length = 367 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 179/333 (53%), Gaps = 20/333 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII---YCDCRDLKKLLTILVGRGVTSLL 291 ++I + T DD L + ++ Y D DL +L +L + + SL Sbjct: 243 RLISQPGET-WLARTAGDD----LDWPDNVSQLMVPRYQDRLDLVAMLMLLGRKQINSLW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA A + + + +VD +I+Y + ++G+ G Sbjct: 298 VEAGAQFAGALLQAGVVDELIVYLAPKLLGDAG 330 >gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens NRL30031/H210] gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens NRL30031/H210] Length = 370 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/327 (37%), Positives = 186/327 (56%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L G Sbjct: 63 GAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R L++ P RI+LD ++ LD ++ Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTE 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L ++I II + + R +L L+ L G +LVE G+ Sbjct: 241 SPTVIVTLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ LVD I+LY++ ++G G Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAG 327 >gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, [Edwardsiella ictaluri 93-146] gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella ictaluri 93-146] Length = 373 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 179/334 (53%), Gaps = 22/334 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 9 DEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVLALRMAGEQ 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 69 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQQAGIAV 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+ S D MA S IT ++ V Sbjct: 129 QHGLMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAARADVQR 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+R+I+D H +++ Sbjct: 189 YRAQSSAILSSSATVLADDPALTVRWDSLDEDTQRLYPREHLRQPLRVIVDSHNRVTPQH 248 Query: 235 KIIKT---ALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++ LLA + T++ P V LA + + DL L+ L + S+ Sbjct: 249 GLVAQPGETLLARIDPDTQDWPPSVSQLAVPRHGEGL------DLVLLMMQLGKMQLNSV 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE G +A + + + LVD +I+Y + +++G+ Sbjct: 303 WVEAGPRLAGALLQAGLVDELIVYLAPMLLGDAA 336 >gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus DSM 20745] gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus DSM 20745] Length = 387 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 17/372 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V + D +M AL + G + NP+V ++V+DG ++G G T HAE+ AL + Sbjct: 9 VPATDLHWMRRALDLAASARGRVAPNPAVGAVLVRDGRLVGEGATEPPPGAHAEIVALRQ 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT YVTLEPC+HYGR+PPC +I GI R VV + DP V+GRGL+ L++ Sbjct: 69 AGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRLLAEA 128 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ + + ++A ++V +T K AVS D I + ITG ++ Sbjct: 129 GVRVELGLAAGAAAAINAGFLKRVHCGLPEVTAKFAVSLDGKIATHTGHARWITGAEARR 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKI 236 + H LR DAI+VGIGT+LADDP LT RL H P+R+++D + + + Sbjct: 189 EGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPEDCGAGGPHHPLRVVVDSQARTPPGAAM 248 Query: 237 IKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 ++ + ++ T + P + A R +++ DL LL L RGV S+L Sbjct: 249 LQPHMPGRTLLATTSSAPPERIAALRAVGADVVTLPDHGGRVDLHALLRCLAARGVNSVL 308 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDV 350 VEGG + + ++ L+D + + + +++G P PL EG + C R+ +V Sbjct: 309 VEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDAPGPLGGEGVATMDAACRLREV---EV 365 Query: 351 CLEYIGKNLCLQ 362 C +G +L +Q Sbjct: 366 C--QVGSDLMVQ 375 >gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactococcus lactis subsp. lactis KF147] gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactococcus lactis subsp. lactis KF147] Length = 362 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 197/365 (53%), Gaps = 28/365 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGEAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 GAT YVTLEPC+H G+ PPC + II+ I+RVV+ DP+ VSG+G++ + + GI Sbjct: 64 PEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGIEV 123 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++++ E KIF + Y+++ + ++ +K A++ D I + S ITG I++ Sbjct: 124 SINVLEKECEELNKIFFY-YVSQGL---PYVMMKYAMTLDGKIATSAGQSKWITGEIARQ 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH R++ AI++G+ T++ DDP+L+ RL NG +P+RII D H + L SKI+ TA Sbjct: 180 KVHQDRSRFMAIMIGVETLILDDPQLSVRLENG---KNPIRIICDTHLRSPLASKIVSTA 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 II T DP F K II C + LK+L L +G+ S+++EGG Sbjct: 237 SEISTIIATAESDPEKQAPFLKVGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348 + S + + ++ + Y + + G PSP+E + YL + Y G Sbjct: 297 TLNASALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPNQAYL---LEGAQITYLGE 353 Query: 349 DVCLE 353 D+ LE Sbjct: 354 DILLE 358 >gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT] gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT] Length = 365 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEAAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ D R DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +LVD ++++ + I+IG Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322 >gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium 1_7_47_FAA] gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium 1_7_47FAA] Length = 370 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 180/329 (54%), Gaps = 16/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G + NP V +IV+DG VIG+G + G PHAE AL+ Sbjct: 6 DNIYMGRALALAAKGEGRVNPNPLVGAVIVRDGAVIGQGYHGFYGGPHAERAALDSLTAP 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GA YVTLEPC HYG++PPC II+ GIRRVV+ DP+ V+G+G+ L GI + Sbjct: 66 AKGAVLYVTLEPCCHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAALKSHGIEV 125 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++E E ++F H TRQ ++ +K A++ D +G S ITG ++ Sbjct: 126 IQGVLEEECIRQNEVFFHFIRTRQ----PYVVMKYAMTMDGRTATSGRLSRWITGEQARE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R + A++ G+GT+LADDP+LTCR+ G +P+RII D L S +++TA Sbjct: 182 HVHKTRNRLSAVMTGLGTILADDPQLTCRIPG--GRNPVRIICDTRLMTPLTSNVVRTAP 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 I+ T DP F+ I+ R DL+ L+ L G + S+L+EGG+A Sbjct: 240 HVRTILATCCQDPAAMAPFKDAGCEILILPERDGHTDLRFLMERLGGMDIDSVLLEGGSA 299 Query: 298 VAHSFINSRLVDSIILY-RSQIVIGEGGI 325 + S ++ +V + Y +I GE G+ Sbjct: 300 LNWSALDQGIVHKLQAYIAPKIFGGEKGL 328 >gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581] gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581] Length = 384 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 184/338 (54%), Gaps = 18/338 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+M+ ALR +R + T+ NP V C++VK+G VIG G G PHAE+ AL AGE AR Sbjct: 9 RWMARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHALRNAGEAAR 68 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GATAYVTLEPCSH GR+ PCA ++E G+ RVVV + DP+ +V+GRG++ L Q GI V+ Sbjct: 69 GATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLRQAGIEVEE 128 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E ++ R R + +K+A+S D M S ITG ++ +V LR Sbjct: 129 GVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCARREVQRLR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKT 239 A+S ++ G+ +V+ D+ LT R L+ PMR+++D +L L + ++ Sbjct: 189 ARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLPLAAACLRE 248 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG-RGVTSLLVE 293 V V +DD + ++ DL+ LL+ L +L+E Sbjct: 249 PGRTLVATVDGHDDEHRE-KLEQAGAEVVVLPAEEGGRVDLEALLSYLASHEEANEVLLE 307 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 GA +A + +++ LVD + L+ + ++ GG PL E Sbjct: 308 TGATLAGAMLDAGLVDEMQLFVAPTLL--GGEARPLFE 343 >gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans MPOB] gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobacter fumaroxidans MPOB] Length = 363 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/363 (34%), Positives = 190/363 (52%), Gaps = 30/363 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M ALR + G TS NP V ++V+ + G + G PHAEV AL +AG++ARGA Sbjct: 1 MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPC+H GR+PPC + +++ G+ VV+ ++DP+ V G G +L G+ V + Sbjct: 61 TLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + ++ ++TLK AV+ D I + S I+ S+ H LR Sbjct: 121 LEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSGDSKWISNERSRKFAHHLRCI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 SD +L+GIGT LADDP L+ R+ P+RI+LD +L L+S +++TA P+++V Sbjct: 181 SDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV 240 Query: 249 TENDDP-------------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 D P V+ L+ K I+ L +LL L +G+ SLLVEGG Sbjct: 241 CGRDAPPTREKALVDAGAEVMRLSSGKGGIH--------LPELLRALGSKGLCSLLVEGG 292 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF------MCVRRDYFGSD 349 A V +F+++ L D + + V+G+ +P+ G + VR FG D Sbjct: 293 ATVLGAFLDNGLADDFHFFYAPKVLGDPA-GTPMVRGRGRERMADAVPVFDVRVRRFGED 351 Query: 350 VCL 352 V L Sbjct: 352 VML 354 >gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon phaeoclathratiforme BU-1] gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon phaeoclathratiforme BU-1] Length = 366 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 198/361 (54%), Gaps = 19/361 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G S NP V +IV DG +IG G G PHAEV A+ +E Sbjct: 6 DLFFMRRALELAVLGAGSVSPNPMVGAVIVCDGEIIGEGYHQQFGGPHAEVHAIASVEDE 65 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A +T YVTLEPCSH+G++PPC+ I+E GI RVV+ DP V+V+G+G+ L GI Sbjct: 66 ALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++E+E A++ + LK+A + D I + S ITG S+++V Sbjct: 126 RVTEGVLEAECIGCNEAFIKSHTTGLPFVCLKLAQTLDGKIATSLGASRWITGEESRSEV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR+ DA++VG TV ADD +LT R +P R++LD +L L+SKI + A Sbjct: 186 HRLRSIYDAVMVGEATVRADDAQLTVR--NCSGRNPQRVVLDSQLRLPLESKIFGSE--A 241 Query: 244 PVIIVTEND---DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 P I+V P +A R++ + +++ D DL++ L L RG+ S+LVEGG+ Sbjct: 242 PTIVVASTSFSASPKVA-QLRERGVTVLFVDEHVGKLDLRQALVELHKRGILSVLVEGGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 ++ +F+ +LVD I+++ + + G + +PL ++ + R +FG D+ L Sbjct: 301 RLSAAFVREKLVDKILIFVAPKLFGGDALSAFAPLGVSMPDQAVDLRFGRPHFFGHDLLL 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cronobacter turicensis z3032] gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032] Length = 367 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 171/327 (52%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP V C+IV DG+++G G G PHAEV AL AG++ Sbjct: 3 DEFYMARALKLASQGRFTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+ V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP +T R + L E P+RI+LD +++ Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEATQAVYPRENLRQPLRIVLDRQNQVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 KI+ + D + ++ ++ DL L+ L R V SL VE Sbjct: 243 KIVNQP--GETWLARACPDDAVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD +I+Y + ++G Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLG 327 >gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 364 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I S ITG +++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 392 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 178/330 (53%), Gaps = 15/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS ALR + T+ NP+V C++V+ G V+G G G PHAE+ AL++AG Sbjct: 14 DEFYMSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKAGRL 73 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G+ AY+TLEPC HYG++PPC + +I+ G+RRVVV ++DP+ ++GRGL L Q GI + Sbjct: 74 AKGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIEV 133 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +E + +L R +I LK+A S D MA S IT S+ V Sbjct: 134 TSGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQF 193 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TV AD+P LT R L + + P+RIILD H K++ Sbjct: 194 FRAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQH 253 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291 ++++ +I + + +I + D + DL L+T L R + + Sbjct: 254 QVVQQPGTCWLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNLIW 313 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE GA +A + + LVD +ILY + ++G Sbjct: 314 VEAGAELAGGLLEAGLVDELILYMAPKLLG 343 >gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63258396|gb|AAY39492.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 366 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/338 (37%), Positives = 179/338 (52%), Gaps = 33/338 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI V + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + +L R ++ +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L +P+R+++D ++ LD+ + Sbjct: 181 SSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQA 240 Query: 240 ALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++VT E +LALA ++ DL++L+ L RGV Sbjct: 241 ---GSALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMDELAARGVN 289 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G +A +F LVD L+ + +G P Sbjct: 290 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARP 327 >gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421] gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421] Length = 362 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 177/336 (52%), Gaps = 29/336 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+F++ G TS NP V +IVK+G +IG G G PHAE AL E GA Sbjct: 1 MRTALQFAKKGAGWTSPNPMVGAVIVKNGKIIGSGFHERYGEPHAERNALRACTETPAGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YVTLEPC H+G+ PPC ++E GI RVV+ DP+ V G+G++ L + GI V + Sbjct: 61 TLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEVSENI 120 Query: 131 ESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 E ++F H T KR + +K A++ D I S IT ++ VHL Sbjct: 121 LKEECDRLNEVFFHYIQT----KRPFVVMKYAMTMDGKIAAVTGNSKWITEEKAREHVHL 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VG+GTVLADDP LTCR+ + +P+RII D + + L ++II+TA P Sbjct: 177 QRHRYTAIMVGVGTVLADDPLLTCRIKDGK--NPIRIICDTNLRTPLSAQIIRTAKKVPT 234 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEG 294 II T ++K ++ CR DL+ L+ +L + SLL+EG Sbjct: 235 IIAT-------CCTEKEKQFAYLHAGCRILTVPEKNGRVDLQNLMPMLGEEKIDSLLLEG 287 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + + + S +V + Y + ++G +P+E Sbjct: 288 GGTLNWAALESGIVQKVHAYIAPKLLGGQSAKTPVE 323 >gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755] gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755] Length = 363 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 186/329 (56%), Gaps = 15/329 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A+ + G T+ NP V C+IVKDG ++ G G HAE +A+ E+ G Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKDGNIVAEGYHQRYGEWHAERKAILHCQEDLSG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPC H+GR+PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI +++ Sbjct: 66 ATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125 Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M++E IF H T KR ++ +K A++ D I A + ITG ++ V Sbjct: 126 VMKAECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + L+ ++++TA Sbjct: 182 CTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSRLRTPLECQLVQTAKTYR 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T +DD F+ + ++ C + DL LL L +G+ SLL+EGG+++ Sbjct: 240 TIIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNF 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S +N+ +V+ + Y + ++G +P+ Sbjct: 300 SALNAGIVNRVHCYIAPKLVGGVTAKTPI 328 >gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 379 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 24/373 (6%) Query: 1 MPVSSF----DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 +P +SF D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE Sbjct: 8 LPSNSFKTMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAE 67 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG Sbjct: 68 RNAVLHCKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGA 127 Query: 117 QWLSQKGI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 L Q G+ +V+ +++ E IF H T KR ++ +K A++ D I S Sbjct: 128 NQLRQAGVEVVEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGES 183 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 ITG ++ +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + Sbjct: 184 KWITGESARARVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTP 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 LD ++++TA +I T DD FR + ++ C R DL+ LL L + Sbjct: 242 LDCQLVQTAKEYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQI 301 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR----- 342 SLL+EGG+++ S + S +V+ + Y + ++G +P+ +++ V+ Sbjct: 302 DSLLLEGGSSLNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKS 361 Query: 343 RDYFGSDVCLEYI 355 + G D+ L+Y+ Sbjct: 362 TELIGEDILLDYV 374 >gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11] gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11] Length = 363 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/332 (36%), Positives = 181/332 (54%), Gaps = 24/332 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL +AG+EA+G Sbjct: 1 MMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQAGKEAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L++ GI Sbjct: 61 ATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETASG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +LTR + + LK+A S D + S IT ++ V RA Sbjct: 121 LLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRYRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHFKLSLDSKII 237 QS AIL TV+ D+ L R + L QE PMR ILD L+ D K+ Sbjct: 181 QSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLKLF 240 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLV 292 + A V I ++N P++ + N I C D + L +V + V + V Sbjct: 241 Q-ASGEVVTISSQNTHPIVT------SENHIQCCVDDEQLNLKEVVNKISRDFNVNHIWV 293 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 E GA +A S I LVD +I+Y + ++G G Sbjct: 294 EAGATLAASMIKENLVDELIIYLAPKLMGADG 325 >gi|163733978|ref|ZP_02141419.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och 149] gi|161392514|gb|EDQ16842.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och 149] Length = 366 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/326 (38%), Positives = 182/326 (55%), Gaps = 7/326 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +R+M+ AL R +G NP+V C+IVK+ V+GRG T GG PHAE QAL +AG +A Sbjct: 5 SRYMALALSLGRRGLGRVWPNPAVGCVIVKEDRVVGRGWTQPGGRPHAETQALAQAGAQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPC+H+G++PPCA +++ G+ RV DPD RV G G + L Q GI V Sbjct: 65 RGADVYVTLEPCAHHGKTPPCAAALVKAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQ 124 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E++ + + R R +TLK+A S D I S ITG ++ VH L Sbjct: 125 SGILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGRQARRVVHAL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DA++VG GT DDP LT R G P R+++ + L + +TA PVI Sbjct: 185 RARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVI 243 Query: 247 IVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + D DP L ++ ++ C + D ++ L G G+T + EGG+A+A S Sbjct: 244 LCHGKDADPQLIRTWQDLGAVLLPCAAKGGQLDPADVMRQLAGHGLTRIFCEGGSALAAS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 + LVD +I + + + IG G+PS Sbjct: 304 LFEADLVDELIGFTAGLAIGAEGLPS 329 >gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sediminis HAW-EB3] gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sediminis HAW-EB3] Length = 374 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 185/333 (55%), Gaps = 17/333 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D MS A++ +R + T NP V ++ K G VIG G G PHAEV AL A + Sbjct: 6 DIEMMSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAMASDN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVVV ++DP+ +VSGRG++ L+ GI V Sbjct: 66 AKGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDAGIQV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ E ++ R IT+K+A S D + S ITG ++ V Sbjct: 126 DVGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARRDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235 LRA+ A++ GI TVL DDP L R + L + H P+R+ILD +L+ K Sbjct: 186 LRARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLTKGFK 245 Query: 236 IIKTALLAPVIIVTENDDPV---LALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLL 291 + ++ +P+++V+ D P+ A ++ + DC R + LL +G+ S+L Sbjct: 246 LF--SVNSPILLVSCTDYPLEEQTAWPEHVSHLKLPADDCGRVVLSLLFKHLGQSCNSVL 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +E GA +A S I D ++LY++ ++G G Sbjct: 304 IEAGATLAGSVIEQGHGDELVLYQAMKILGSAG 336 >gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 366 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/321 (38%), Positives = 179/321 (55%), Gaps = 8/321 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS AL + + NP V ++VKDG VIGRG G PHAEV AL+EAG Sbjct: 6 DLAFMSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G++ Sbjct: 66 ARGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVA 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E+ + +L R R + LK A+S D + +A S +TG ++ V Sbjct: 126 EEGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ AILVGIGTVLAD+P L RL P+++I+D H + D+ + T V Sbjct: 186 ERARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTP--GAV 243 Query: 246 IIVTENDDPV-LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I D PV A +++C D ++++ +L R + +LVE G VA Sbjct: 244 WIFHGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAA 303 Query: 301 SFINSRLVDSIILYRSQIVIG 321 S + L+D +LY + +++G Sbjct: 304 SLFAAGLIDEWLLYVAPLLLG 324 >gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160] gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160] Length = 383 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 192/357 (53%), Gaps = 21/357 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++A Sbjct: 3 SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++ +E + +++R R + +K+A S D G+ S IT + Sbjct: 123 EAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PRRVLIDSQLDVPLDAQILAG 241 Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I + D L A A R++ I+ DL ++L++L R V L V Sbjct: 242 ---APTLIFCGHLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRR 343 E G + S + VD +++Y + ++G +PSP L E ++ NF + R Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIER 355 >gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102] gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102] Length = 367 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 9/327 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL +A Sbjct: 3 SALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 A+GATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L G Sbjct: 63 QAAAKGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + +L+R R I LK A S D ++ S ITG ++ Sbjct: 123 IRTESGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAARED 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R L++ P RI+LD ++ LD ++ Sbjct: 183 VQILRAESCAVLTGIGTVLADNPKLNVRSFPTLRQ--PARIVLDSRLQIPLDCHLVTDTD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L + ++I II + + R +L L+ L G +L E G+ Sbjct: 241 SPTVIVTLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + +F+ LVD I+LY++ ++G G Sbjct: 301 TLVSAFLKDDLVDEIVLYQAPKLLGAG 327 >gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC BAA-1640] Length = 368 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/331 (37%), Positives = 177/331 (53%), Gaps = 11/331 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D FMS A+ ++ +G T TNP V C+IV++ +IG G G HAEV A+ +A Sbjct: 6 DRYFMSRAIELAKNGIGATKTNPLVGCVIVRNEKIIGEGYHKVFGSCHAEVNAINDAKAK 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE GAT YV LEPCSHYG++PPCA IIE I RVV+ DP +VSGRG++ L G Sbjct: 66 GENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ +++ E + Y T R + LK ++ D I S IT S+ Sbjct: 126 IEVEVGVLKEECEKLNERYFTYIKNNRPFVVLKSGMTIDGKIATKTYESQWITSEESRKF 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR D I+VGI TVL DDP L R G HSP RII+D ++ +K++ L Sbjct: 186 SHELRGMCDGIMVGINTVLKDDPTLNVRA-GRYPHSPARIIVDSKLRIFPSAKVLSKDLE 244 Query: 243 APVII-VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 II TEN D + + +N+N++ + DL+ L+ L ++S+L+EGG Sbjct: 245 NIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMVDLRDLMEKLKTFNISSILLEGGG 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 ++ S + +LVD + + +IG G+ + Sbjct: 305 SLNASMLREKLVDKFYFFIAPKIIGSDGVSA 335 >gi|225874950|ref|YP_002756409.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum ATCC 51196] gi|225792610|gb|ACO32700.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum ATCC 51196] Length = 380 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 121/336 (36%), Positives = 187/336 (55%), Gaps = 14/336 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D R+M AL +R ++S NP+V C++V++G ++G G Y HAE+ AL+ Sbjct: 10 PQGNEDQRWMQRALALARLSKAVSSPNPAVGCVLVREGALVGEGYHDYSRKDHAEIVALK 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG++ARGATAYVTLEPC H GR+ PC + +I G+RRVV DP+ +VSG+GL+ L Q Sbjct: 70 QAGDQARGATAYVTLEPCCHTGRTGPCTEALIAAGVRRVVAATVDPNPKVSGQGLERLRQ 129 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP------I 174 GI + ESE + A+ +TLK VS D I GSV + Sbjct: 130 AGIETTAGIGESEARALNDAFACSMRNGHPFVTLKAGVSLDGRIA-PRPGSVETGKPYFL 188 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLD 233 TG + QV ++R + DA+L GI TVL DDP+L+ R GL P +R++LD +L LD Sbjct: 189 TGPQALAQVQVMRHEHDALLTGINTVLTDDPQLSDR-TGLPRRRPLLRVVLDSALRLPLD 247 Query: 234 SKIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 SK+++TA ++ + + ++ R + + L ++L L + S Sbjct: 248 SKLVRTAQQDVLVFCSFAPIARRQALESMGVRVEELPGKTRGRISLDEVLGRLHEMQILS 307 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 +++E G V S + L+D ++LY + +++G GGI Sbjct: 308 VMLEAGGMVNASALADGLIDKLVLYYAPVLLGTGGI 343 >gi|254449430|ref|ZP_05062867.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 238] gi|198263836|gb|EDY88106.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 238] Length = 359 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 180/326 (55%), Gaps = 15/326 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ + Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPCENGGRVIGRGWTADGGRPHAETRALDSI--D 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPC+H+ ++PPC +I + RVV+ DPD RV+G+G+ L GI + Sbjct: 59 AAGATAYVTLEPCAHHAKTPPCVDALIAANVSRVVIATGDPDPRVAGKGIAILRAAGIDV 118 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E E ++ + +L R E R +TLK+A S D I A S ITG ++ +VH Sbjct: 119 MIGVREDEARVDMAGFLLRITENRPLVTLKLASSFDGRIAAATGESKWITGPDARRKVHA 178 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+LVG GTV ADDP LT R G P+RI+ + + ++ T AP+ Sbjct: 179 MRAAHDAVLVGAGTVRADDPTLTVREMGAVRQ-PVRIVASGRLDMGA-ANLLATINYAPL 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + V A + + + CD + D ++ L G+T + EGG ++A S Sbjct: 237 WLCHGAN--VDAQKWVDQGAKSLPCDLQGREIDPVDMMHKLAAAGLTRVFCEGGGSLAAS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 + + LVD I+ + + IV+G G PS Sbjct: 295 LLGAGLVDEIVGFTAGIVLGAEGTPS 320 >gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 364 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 197/363 (54%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I S ITG ++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas sp. CNPT3] gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas sp. CNPT3] Length = 381 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/337 (36%), Positives = 179/337 (53%), Gaps = 21/337 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +MS AL ++ ++ NP+V C+IV D IV+G G G HAEV AL A Sbjct: 7 SEQDKEYMSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYALAMA 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A+ +T YVTLEPCSH+GR+PPCA +I+ G++RV V + DP+ +V+G+G++ L G Sbjct: 67 GSKAQSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDAG 126 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + K ++ R + KR+ +TLK+ S D + S ITG S+ Sbjct: 127 IEVSVGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRCD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHFK 229 V RAQ AIL TVLADDP L R LQ+ P+RIILD K Sbjct: 187 VQHFRAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRNK 246 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284 L+ KI +L +I+V L+ + + C DL+ LL +L Sbjct: 247 LTGQEKIF--SLPGDIILVALQLRHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLNR 304 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + +E GA +A +F ++LVD ILY++ ++G Sbjct: 305 YELNDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMG 341 >gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 307] gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 307] Length = 370 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/326 (37%), Positives = 179/326 (54%), Gaps = 15/326 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ G + Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GID 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT+YVTLEPC+H+G++PPC +I + RVV+ DPD RV+G+G+ L GI + Sbjct: 59 ADGATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGIDV 118 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E E + + +L R E R +TLK+A S D I A S ITG ++ +VH Sbjct: 119 ITGVREHEAREDMAGFLLRVTENRPFVTLKLASSFDGRIATATGQSKWITGPDARRKVHA 178 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+LVG GTV ADDP LT R G P+R++ + + ++ T AP+ Sbjct: 179 MRAGHDAVLVGAGTVRADDPTLTVRNTGAVRQ-PVRVVASRRLDIGA-ANLLATLGDAPL 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + V A + + CD + D ++ L G+T + EGG ++A S Sbjct: 237 WLCHGAN--VDAQKWADLGAKTLACDLQGRQIDPVDMMHKLAASGLTRVFCEGGGSLAAS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 + + LVD I+ + + I +G G PS Sbjct: 295 LLGAGLVDEIVGFTAGIALGAEGTPS 320 >gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. subtilis str. 168] gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. 168] gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. SMY] gi|132565|sp|P17618|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis] gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168] gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. subtilis str. 168] gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4] Length = 361 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG A G Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 65 ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 I+ E + FLH T ++TLK A S D I + S IT ++ Sbjct: 125 ILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + ++ +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + II Y + +IG PS Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324 >gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5- phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5- phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 369 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 14/365 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ +G + NP V ++VKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAQKGIGGVNPNPLVGAVVVKDGKIIGEGWHKKFGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + + GI + Sbjct: 66 AEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGIDI 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 126 KLGVLEKEAKDVNKIFLKYIENKVPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVIDPNLESPIEAKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLA--LAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAA 297 IIVT +D+ L + K I+ + + K +L L + S+L+EGG+ Sbjct: 245 DNKAIIVTSSDNKNLEKIKVYEKLGTKFIFLEGKTFKMEDILKELGKLEIDSVLLEGGSE 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + + ++D+ ++ + +IG+ P G+ NF + + S+ G Sbjct: 305 LISTAFKENIIDAGEIFIAPKIIGDNS-AVPFINGF---NFDSMEDVFKFSNPKFNIYGD 360 Query: 358 NLCLQ 362 N+ ++ Sbjct: 361 NISIE 365 >gi|303228926|ref|ZP_07315736.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-134-V-Col7a] gi|302516340|gb|EFL58272.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-134-V-Col7a] Length = 406 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 184/352 (52%), Gaps = 38/352 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG+ Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI V Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123 Query: 127 --DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 D ++ ++ H + Q K +T+K A+S D I S IT S+ H Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHK-PFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDP 226 +LRA DA+LVGIGT+LADDP L CRL N L+ H P IILD Sbjct: 183 ILRASHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDS 242 Query: 227 HFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALA-------------FRKKNINIIYCD 271 + D+K+ +I V + + +ALA R+ + D Sbjct: 243 QGRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVEELPTKSVRQGRTTDVAID 302 Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG Sbjct: 303 IKKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIG 354 >gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM 9485] gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM 9485] Length = 409 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G TS NP V +IVKDG ++G G G PHAEV+AL AGE ARG Sbjct: 10 YMRRALVLAQQAAGRTSPNPMVGAVIVKDGRIVGEGYHRRAGEPHAEVEALRVAGEAARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 AT YVTLEPC+H GR+PPC II GI V + DP+ VSG+G L+ GI V Sbjct: 70 ATMYVTLEPCAHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLAAAGIRVQCG 129 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E+E + R +T K A+S D I S I+ ++ +VH LR Sbjct: 130 VCEAEAFELNRPFFKHITTGRPFVTAKFAMSLDGKIATVIGQSRWISNAAARRRVHHLRN 189 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAPV 245 ++DA+LVG GTV+ADDP LT RL L S P+RI+ D ++ L +K+ L Sbjct: 190 RTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLRIVADSRGRVPLSAKVFDPDLPGQT 249 Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T P A ++ +++ D L L L RG+ S+LVEGG+ + Sbjct: 250 VVATTELIPADHRRALVERGVDVWLLPASDDGRVRLSALFDELGRRGMLSVLVEGGSELL 309 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + RL+D + ++ + ++IG P P+ Sbjct: 310 GACFCERLIDRVWVFMAPLIIGGQHAPGPV 339 >gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus hydrogenoformans Z-2901] gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus hydrogenoformans Z-2901] Length = 361 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 196/367 (53%), Gaps = 34/367 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL+ ++ +G TS NP V +IV KDG ++G G G PHAE +AL+ AGE Sbjct: 3 DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +ARG T YVTLEPC HYGR+PPC II GI++VVV V DP+ +VSG+G++ L GI Sbjct: 63 KARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIE 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + +E +L+ + ++ I+LK A++ D I S ++G S++ VH Sbjct: 123 VVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-----PH----FKLSLDSK 235 LR + DA+LVG T++ D+P LTCR+ Q +P RI+L P F+L + Sbjct: 183 RLRNEYDAVLVGAKTLIIDNPLLTCRIP--QGRNPYRIVLSGSGNLPEGLNIFQLEKEKN 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I+ TA V+ ++ + INI K+ L G+ S+LVEGG Sbjct: 241 ILITASKKLPKHVSNGFGHIITTPLGENRINI--------KEAFLELSRLGIISILVEGG 292 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---------CVRRDYF 346 A V S + +RL D ++ + ++G P P+ G L+ + M +RR F Sbjct: 293 AVVHASLLQNRLADKAYIFIAPKIVGGKNAPGPI--GDLKISLMKDALPLAIHKLRR--F 348 Query: 347 GSDVCLE 353 G DV +E Sbjct: 349 GEDVFIE 355 >gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM603] gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM603] Length = 367 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/338 (35%), Positives = 182/338 (53%), Gaps = 25/338 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ IL TVLAD+ L R + L + P R+ILD Sbjct: 181 ARKDVQRFRAQASTILSTSQTVLADNASLAVRWHDLPQSVQAQYAETDLRQPFRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-G 286 +L + + +T+ + + + +EN D L +N + DL +LL L + Sbjct: 241 HQLHPELALYQTS-SSVLRVASENAD----LCISAENGKL------DLHELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G +A S I +LVD IILY + ++G G Sbjct: 290 VNQVWVEAGGQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum ATCC 824] gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum ATCC 824] Length = 383 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 179/325 (55%), Gaps = 6/325 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V + FM AL + G + NP V +IVKD ++G G G HAEV AL Sbjct: 16 VFKLNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNM 75 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + Sbjct: 76 AGKDAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKEN 135 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M+ E + ++ KR IT+K+A + D I S I+G S+ Sbjct: 136 GIEVITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRK 195 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T Sbjct: 196 YVHHLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQ 255 Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 +II TE D ++II + +L LL L G+ S+L+EGG+ Sbjct: 256 ERKIIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGS 315 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 + SFI +D I+ + + +++G Sbjct: 316 ELNFSFIKEENIDKIMCFIAPMIVG 340 >gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587] gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587] Length = 367 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/339 (35%), Positives = 180/339 (53%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQASELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGR- 285 +L P + + + PVL +A + I + + DL++LL L + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENEKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGGQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3] gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3] Length = 367 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 26/366 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L + P+R+++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242 Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 +I++ A L + E P A + + + + LL +L+G+ + S+ Sbjct: 243 RIVQQAGETLFARLRADERQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +I+Y + ++G +P LEE +F Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELNQAPHFKFNEIRQV 356 Query: 347 GSDVCL 352 G DVCL Sbjct: 357 GPDVCL 362 >gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Klebsiella pneumoniae NTUH-K2044] gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 367 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 190/366 (51%), Gaps = 26/366 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L + P+R+++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242 Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 +I++ A L + E P A + + + + LL +L+G+ + S+ Sbjct: 243 RIVQQAGETLFARLRADERQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +I+Y + ++G +P LEE +F Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356 Query: 347 GSDVCL 352 G DVCL Sbjct: 357 GPDVCL 362 >gi|49088842|gb|AAT51612.1| PA4056 [synthetic construct] Length = 374 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/342 (35%), Positives = 176/342 (51%), Gaps = 33/342 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL +AGE Sbjct: 5 DPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQAGEN 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 65 ARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAV 124 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ R + +K+A+S D MA S ITG +++ V Sbjct: 125 QSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQR 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235 L A+S +L G T+LADD L R + L P+R+++D ++ L+S Sbjct: 185 LSARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVPLESA 244 Query: 236 IIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 + P ++ T + +LAL + ++ DL KLL L Sbjct: 245 FYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLLELAA 293 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 RG +LVE G +A +F LVD L+ + +G P Sbjct: 294 RGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis BSn5] gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis BSn5] Length = 361 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG A G Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 65 ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIEVREG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 I+ E + FLH T ++TLK A S D I + S IT ++ Sbjct: 125 ILADQAERLNEKFLHFMRT----GLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQ-PVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + ++ +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + II Y + +IG PS Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPS 324 >gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Carnobacterium sp. AT7] gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Carnobacterium sp. AT7] Length = 351 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 176/311 (56%), Gaps = 8/311 (2%) Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76 +R G T+ NP V +IVK G VIG+G G PHAEV A+ A E+ GAT YVTL Sbjct: 1 MARKGKGWTTPNPLVGAIIVKGGRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVTL 60 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135 EPCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI +V ++E E + Sbjct: 61 EPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEEESQ 120 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 ++ V K + +K A+S D I S I+G S+ QVH LR + I+V Sbjct: 121 KLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAGIMV 180 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GI T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T Sbjct: 181 GIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTRRANK 238 Query: 256 LAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 L ++ +I ++ + DLK+L+ +L +G+ S+L+EGGA + S + +VD Sbjct: 239 EKLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDSILLEGGANLNFSALEEGIVDK 298 Query: 311 IILYRSQIVIG 321 I Y + +IG Sbjct: 299 IQSYIAPKIIG 309 >gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris MG1363] gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp. cremoris NZ9000] gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris MG1363] gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris NZ9000] Length = 362 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/362 (35%), Positives = 196/362 (54%), Gaps = 22/362 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM+ A+ +R G + NP V +IV DG +IG+G G HAE+ A + E Sbjct: 4 DEHFMNLAILLARKGGGNVNPNPQVGAIIVNDGRIIGQGYHEKYGEAHAEINAFKSCIES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 G+T YVTLEPC+H G+ PPC + II+ ++RVV+ DP+ V+G+G++ + + GI V Sbjct: 64 PEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGIDV 123 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 +++E E KIF H Y+T ++ ++ +K A++ D I S ITG ++ Sbjct: 124 SLKVLEKECKDLNKIFFH-YVT---QRTPYVMMKYAMTLDGKIATYKGQSKWITGEKARQ 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH R++ AI++G+ T+L DDP+LT R+ NG+ +P+RII D + L SKI+ TA Sbjct: 180 KVHEDRSRFMAIMIGVETLLKDDPQLTARIKNGI---NPIRIICDTQLRTPLTSKIVSTA 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 P II T N++ AF + I+ DLK L+T L R + SL++EGGA Sbjct: 237 FEIPTIIATSNENIQKHQAFIEAGCEILLVSSISKHLDLKDLITKLGEREIDSLILEGGA 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVC 351 + S + + +V + Y + + G PS +E +E D Y G D+ Sbjct: 297 RLNASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQAYLLDRPQVAYLGEDIL 356 Query: 352 LE 353 LE Sbjct: 357 LE 358 >gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter formigenes OXCC13] gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter formigenes OXCC13] Length = 363 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 111/323 (34%), Positives = 175/323 (54%), Gaps = 11/323 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +FM AL +R LTS NP V C+IV+DG +IG G T G HAEV+AL + G+ Sbjct: 6 KFMRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVAKRGQ 65 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGAT YVTLEPCSH GR+PPCA +I ++RVV ++DP+V+V+G+GL L GI Sbjct: 66 DCRGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKAAGIE 125 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++ E + +L+R R + +K+A S D + S IT ++ H Sbjct: 126 VLCGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAARRDGH 185 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R ++DAI+ GIGTV+ D+P L RL P RI++D K +D+++++ Sbjct: 186 EWRMRADAIMTGIGTVIKDNPRLNVRLPDTIRQ-PKRIVVDSQLKTPIDARVLENG--GD 242 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I + N P A ++K + + DL ++ +L + + + VE GA + Sbjct: 243 TWIFSANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGATLNG 302 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 + I + VD +++Y + +G G Sbjct: 303 ALIQAGFVDEMLIYLAPCFLGSG 325 >gi|224476858|ref|YP_002634464.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421465|emb|CAL28279.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus carnosus subsp. carnosus TM300] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 169/320 (52%), Gaps = 15/320 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RF+ A++ ++ G T NP+V ++V G ++G G G HAEVQAL+ AG++AR Sbjct: 3 RFLENAIQLAKMAEGQTGVNPAVGSVVVNHGRIVGLGAHLKQGERHAEVQALDMAGDQAR 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T YV+LEPC+HYG +PPC IIE GI +VV + D+ + G + L GI V Sbjct: 63 GGTIYVSLEPCTHYGSTPPCVNKIIEAGISKVVYAMK--DITLDSPGDEILKSAGIEVVY 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 E E + + +V K +TLK++VS D S IT K V RA Sbjct: 121 QHEVEAEKMYKDFFAAKVSKIPEVTLKVSVSLDGKQATDSGQSQWITNPGVKQDVLKNRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAIL G GTV AD+P LT R+ G E P+R+ILD LS I L PV + Sbjct: 181 RHDAILTGAGTVEADNPSLTVRIEG--ERQPIRVILDKSGSLSFQENIFHDQ-LTPVWLY 237 Query: 249 TENDDPVLALAFRKK----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 TEN+ A + K NINII + + +L L +G+ SL VE G V+ F+ Sbjct: 238 TENN------AVQNKEHLDNINIIQLEECSVHNILRDLYNKGIGSLYVEAGPNVSSQFLQ 291 Query: 305 SRLVDSIILYRSQIVIGEGG 324 S V ++I+Y + VIG G Sbjct: 292 SECVQTLIIYYAPKVIGGSG 311 >gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C str. JGS1495] gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C str. JGS1495] Length = 365 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/336 (35%), Positives = 183/336 (54%), Gaps = 16/336 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGIEV 121 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++E E +IF + Y+ E R I LK A++ D I S IT S+ Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKDFKSKWITNKKSRE 177 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + +I T N D + + K I +I + ++ ++L L + + S+L+EG Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + +F+ ++ V+ I + + V G +P+E Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 7_1] gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 7_1] Length = 370 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 198/363 (54%), Gaps = 17/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAGE Sbjct: 6 DEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAGEN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLE CSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI V Sbjct: 66 AKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 126 KFGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQF 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR + AI+VGI TVL D+P L RL+ G+++ +P RI++DP+ + +++K + Sbjct: 186 LRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRIVVDPNLESPIEAKFLNFN- 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 IIVT ND+ L KN+ I+ + + +K +L L + S+L+EGG+ Sbjct: 245 DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGGSG 304 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDVC 351 + + ++++ ++ + +IG+ P G+ N V + + +G ++ Sbjct: 305 LISTAFKENIINAGEIFIAPKIIGDNS-AIPFINGFNFDNMEDVFKLPNPKFNIYGDNIS 363 Query: 352 LEY 354 +E+ Sbjct: 364 IEF 366 >gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 372 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 185/333 (55%), Gaps = 14/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S+ DA+ M+ A+R + TS NP+V C++ G ++G+G G PHAE+ A+ + Sbjct: 5 SALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIAQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE +GATAYVTLEPC+H+GR+ PC++ +I+ G+ RVV + DP+ V+G GLQ LS Sbjct: 65 AGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDA 124 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V ++E E K ++ R +T+K+A S D + S ITG +++ Sbjct: 125 GVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLARE 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-------NGLQEHS---PMRIILDPHFKLS 231 V RA+S AIL G GTVLAD+P L R + L E S P RI+LD ++ Sbjct: 185 DVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGRNQMR 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 D + +L +P++I+ + A ++ + DL ++ L RG + Sbjct: 245 PDLHLF--SLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQIW 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A + + ++L+D +ILY++ ++G+ G Sbjct: 303 VEAGAKLAGALLQNKLIDELILYQAPKLLGDKG 335 >gi|294793755|ref|ZP_06758892.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44] gi|294455325|gb|EFG23697.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44] Length = 403 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 180/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI + Sbjct: 63 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIKV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E + T + +T+K A+S D I + S IT S+ H+ Sbjct: 123 VCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGHV 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229 LRA DA+LVGIGT+LAD+P+L CRL L E H P IILD + Sbjct: 183 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 242 Query: 230 LSLDSKIIKTALLAPVIIVTE---------------NDDPVLALAFRKKNINIIYCDCRD 274 S++ + I V++ V +++ RK I D + Sbjct: 243 TPTTSRVFEINNRKIHIFVSKGCPKDRIQVLEQVGAQVTVVESISTRKSKSTDIVIDIKK 302 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG Sbjct: 303 LSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIG 351 >gi|188534657|ref|YP_001908454.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99] gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99] Length = 367 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 176/330 (53%), Gaps = 14/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEVYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +RGAT YVTLEPCSH+GR+PPC +I G++RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 SRGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL GTVLAD+P LT R + L S P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I A + + P + I + D DL +L +L + + SL VE Sbjct: 243 RLI--AQPGETWLARTSSCPQQWPENVSQLIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA A + + + +VD +I+Y + ++G+ G Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAG 330 >gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia mollaretii ATCC 43969] gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia mollaretii ATCC 43969] Length = 369 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 178/331 (53%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 AHGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLAD+P LT R + L + P+RIILD +++ Sbjct: 184 FRAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V ++ P +NI + + + DL L+ L R + S+ Sbjct: 244 KVIQQDGPCWLARVDADEQPW------PENIEQLLLPRHGNGVDLVLLMMQLGKRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLEAGVVDELILYIAPKLLG 328 >gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp. 638] gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp. 638] Length = 367 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG+++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC + +I+ G+ RVV + DP+ +V+GRGL L Q+GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M ++ + +L R +I LK+ S D MA S +T S+ V Sbjct: 123 SHGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP +T R + L + + P+RI++D +++ Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWDELNQDTQALYPQENLRQPLRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 +I++ + T+ DD R +I + +L +L+G+ V S+ VE Sbjct: 243 RIVQQPGET-LFARTKEDDRQWPEHVR--SIMVPEHKGHLDLVVLMMLLGKQQVNSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD +I+Y + ++G Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLG 327 >gi|269798015|ref|YP_003311915.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008] gi|269094644|gb|ACZ24635.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008] Length = 404 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 181/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 4 DVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI + Sbjct: 64 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E + T + +T+K A+S D I + S IT S+ H+ Sbjct: 124 VCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGHV 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG------------LQE----HSPMRIILDPHFK 229 LRA DA+LVGIGT+LAD+P+L CRL L E H P IILD + Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLGR 243 Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVL----ALAFRKKNINIIYCDCRD 274 S++ I+V+ EN ++ +++ RK + D + Sbjct: 244 TPTTSQVFDVENRKVHILVSKGCPKERIQALENVGTIVTVVESISTRKSKSTDVVIDIKK 303 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG Sbjct: 304 LSIDDILTKLGELGYTSILVEGGSAIISSFVETMNFDKVVTYIGNTIIG 352 >gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 403 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 188/362 (51%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ A+ + G TS NP V C+IVK+G +I G G HAE A+ E+ Sbjct: 41 DVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEED 100 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L GI + Sbjct: 101 LTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEV 160 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M +E IF H T KR ++ LK ++ D I S ITG ++ Sbjct: 161 VEDFMRTECDALNPIFFHYIQT----KRPYVLLKYGMTADGKIATYTGNSKWITGEAARA 216 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + AI+VG+ TVLADDP L R+ ++ P+RI+ D + LDS++++TA Sbjct: 217 NVQKSRHEYSAIMVGVETVLADDPMLNSRMENAKQ--PVRIVCDSQLRTPLDSQLVQTAR 274 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 II T N+D + + I+ R DL LL L G+ SLL+EGG+ Sbjct: 275 QYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQ 334 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + LV+ + Y + +IG +P+ + + V+ + G D+ L Sbjct: 335 LNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILL 394 Query: 353 EY 354 +Y Sbjct: 395 DY 396 >gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51] gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51] Length = 367 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/338 (35%), Positives = 184/338 (54%), Gaps = 25/338 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ +++++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLDADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T + + + +EN + L KN + DL++LL L + Sbjct: 241 HQLHPELALYQTP-SSVLRVASENAE----LCISAKNGKL------DLRELLAQLAQQQN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 372 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 197/368 (53%), Gaps = 17/368 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +FMS AL ++ + L++ NP V C+I K+G +IGRG T G HAEVQAL +A Sbjct: 3 SAVDHQFMSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G +A G+T YVTLEPCSH G++PPC +I +V+V + DP+ V+G+GL+ L Sbjct: 63 KARGNDATGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLK 122 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V +MESE ++ +++R + +KIA S D + S ITG ++ Sbjct: 123 LAGIEVQYGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RAQ+ AI+ G+GTV DDP L R P+R I+D + +++KI+K Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVR-EVETRRQPVRTIIDSKLETPINAKILKN 241 Query: 240 ALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCR----DLKKLLTILVG-RGVTSL 290 L+ ++IV N D A AF + I +I DL L + L R + + Sbjct: 242 PELSDILIVCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDYFG 347 +E G + S + +D ++LY + ++G+G G+ S L + +N+ + + G Sbjct: 302 HIEAGFKLNDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLG 361 Query: 348 SDVCLEYI 355 SD+ L I Sbjct: 362 SDLRLRLI 369 >gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440] gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440] Length = 378 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 10 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI Sbjct: 70 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG +++ V Sbjct: 130 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L +VLAD+ +T R L +P+R+++D +L L + Sbjct: 190 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLPLAA 249 Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + P ++VT DDP A L+ N + DL LL L RGV Sbjct: 250 PFFQA---GPALVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 300 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+E GA + +F LVD L+ + +G P Sbjct: 301 NEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 339 >gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 2192] gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 2192] Length = 373 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L +R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Carnobacterium sp. 17-4] gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Carnobacterium sp. 17-4] Length = 355 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 115/316 (36%), Positives = 181/316 (57%), Gaps = 12/316 (3%) Query: 14 ALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAY 73 AL +R G T+ NP V +IVK G VIG+G G PHAEV A+ A ++ GAT Y Sbjct: 2 ALDLARKGKGWTTPNPLVGAVIVKGGRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATLY 61 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 VTLEPCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI +V ++E Sbjct: 62 VTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEE 121 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + ++ V K + +K A+S D I S I+G S+ QVH LR + Sbjct: 122 ESQKLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAG 181 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-- 250 I+VGI T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T Sbjct: 182 IMVGIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTKR 239 Query: 251 -NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 N++ + L ++ I +I + DL++L+ ++ +G+ S+L+EGGA + S + Sbjct: 240 ANNEKLETL--KQMGIEVIVTKEKYGRVDLQELMKVVGAKGIDSILLEGGATLNFSALEE 297 Query: 306 RLVDSIILYRSQIVIG 321 +VD I Y + +IG Sbjct: 298 GIVDKIQSYIAPKIIG 313 >gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Nitrospira defluvii] gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Nitrospira defluvii] Length = 373 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 122/330 (36%), Positives = 179/330 (54%), Gaps = 11/330 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D +M+ ALR + G TS NP V L+V G ++G+G G PHAEV AL + Sbjct: 1 MSSRDREYMTLALRLAAKGRGSTSPNPMVGALVVTRGRIVGQGSHRKAGGPHAEVIALSQ 60 Query: 63 AGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+G T YVTLEPCSH R+PPC ++ G+RRVVV + DP+ +V G G+ L++ Sbjct: 61 AGSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTR 120 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI VD E+E AYL R LK ++ D I A S IT +S+ Sbjct: 121 AGIRVDVGCCEAEATQLNQAYLHWVKTGRPFTILKAGMTLDGQIATASGESQWITDEVSR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSKI 236 Q H LRA DAILVGIGTVL D+P+LT R+ P+RI++D ++ L +K+ Sbjct: 181 QQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTTGRQPLRIVVDSRLRIPLKAKV 240 Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGR----GVTSLL 291 ++ A +I T + RK+ I+++ L +L R GVT++L Sbjct: 241 LEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAGGHVNLPVLWARLGQLGVTTVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VEGG+ + + + + L ++ Y + +++G Sbjct: 301 VEGGSDLNAAVLQAGLPQRLMCYVAPLLLG 330 >gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275] gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275] Length = 384 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 193/367 (52%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M AL ++ VG + NP V +IVK+G +IG G G HAE AL E Sbjct: 21 ECKYMQLALENAKKGVGFVNPNPMVGAVIVKNGKIIGEGYHKKYGGLHAERNALNNCSEN 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + AT YVTLEPC HYG++PPC IIE I++VV+ DP+ ++SG+ L L ++GI V Sbjct: 81 PKDATMYVTLEPCCHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGIKV 140 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E+EG + K+ + K A++ D I S ITG ++ V Sbjct: 141 EKGLLENEGDKLNETFRKFITTKKPFVLFKYAMTMDGKIATKINESKWITGEEARLNVQK 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + I+VG+ TV+ D+P L C++ NGL +P+RII D + + + SKI+ TA P Sbjct: 201 TRHKYSGIMVGVDTVIIDNPMLNCKIENGL---NPIRIICDTNLRTPIGSKIVSTAKEIP 257 Query: 245 VIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T +DD + + +K I+ DL+ L++ L + + S+L+EGGA +A Sbjct: 258 TIIATCSDDEIKKEQYIEKGCEILQIKIKKKKIDLQDLMSKLGEKKIDSILLEGGATLAW 317 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRD---YFGSDVCLEYIG 356 S +VD I Y + + G G + L EG K+ + ++ FG D +E Sbjct: 318 SAFERGIVDKIQAYIAPKIFGGNGKTAVLGEGIDFPKDAIMLKNSEIFRFGDDFMIESDV 377 Query: 357 KNLCLQE 363 C QE Sbjct: 378 TYKCSQE 384 >gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 373 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 179/334 (53%), Gaps = 22/334 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV + ++G G G PHAEV AL AG++ Sbjct: 8 DEFYMARAFELARRGRFTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMAGDK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 68 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDV 127 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+A S D MA S IT S+ V Sbjct: 128 SHGLMMNEAEAVNRGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQR 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----QE-------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L Q+ P+R+I+D +++ + Sbjct: 188 YRAQSSAILSSSATVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEH 247 Query: 235 KIIKTA---LLAPVIIVTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSL 290 K+I A LLA + DD L K + I Y DL L+ L + S+ Sbjct: 248 KLISQAGETLLARI----HPDD--LHWPENVKQLAIPQYGQGIDLVVLMMQLGKLQINSV 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA++A + + + LVD +I+Y + ++G+ Sbjct: 302 WVEAGASLAGALLQAGLVDELIIYLAPKLLGDAA 335 >gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes 195] gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes 195] Length = 365 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 174/322 (54%), Gaps = 10/322 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NP+V +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V Sbjct: 62 GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVP-GN 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ D R DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +LVD ++++ + I+IG Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322 >gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661] gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661] Length = 368 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 178/328 (54%), Gaps = 14/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG+++G G G PHAEV AL AG++ Sbjct: 3 DEIWMARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RV+ + DP+ V+GRGL L Q GI V Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R L + P+R+++D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPSLTVRWQDLAADTQAAYAEADLRQPVRVVIDSQNQVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I + + + D + ++ + + D DL L+ +L R + ++ VE Sbjct: 243 RLISQS--GETWLARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322 GA +A + + + +VD +I+Y + ++G+ Sbjct: 301 GAKLAGALLTAGVVDELIVYMAPKLLGD 328 >gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii str. W23] Length = 361 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 119/325 (36%), Positives = 168/325 (51%), Gaps = 12/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG A+G Sbjct: 5 YMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGSHAKG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 65 ADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIEVKEG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 I+ E + FLH T ++TLK A S D + S IT ++ Sbjct: 125 ILADQAEKLNEKFLHFMRT----GLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV+AD+P LTCRL + + P+R+ILD + D+++I Sbjct: 181 QYRKTHQSILVGVGTVIADNPSLTCRLPDVTKQ-PVRVILDTALSIPEDTQVICDQAAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + ++ +L IL GV S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAEEGVMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS 327 + II Y + +IG PS Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHSPS 324 >gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia intermedia ATCC 29909] gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia intermedia ATCC 29909] Length = 369 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+G +PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M ++ + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L + P+RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++ + L + V + P V L + + DL L+ L R + S+ Sbjct: 244 QVTQQNGLCWLARVEADQQPWPDNVEQLLLPRHGGGV------DLVLLMMQLGKRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum EA 2018] Length = 365 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 178/322 (55%), Gaps = 6/322 (1%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + FM AL + G + NP V +IVKD ++G G G HAEV AL AG+ Sbjct: 1 MNEAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + GI Sbjct: 61 DAEGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ +M+ E + ++ KR IT+K+A + D I S I+G S+ VH Sbjct: 121 VITGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T Sbjct: 181 HLRSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERK 240 Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 +II TE D ++II + +L LL L G+ S+L+EGG+ + Sbjct: 241 IIIATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELN 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 SFI +D I+ + + +++G Sbjct: 301 FSFIKEENIDKIMCFIAPMIVG 322 >gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187] gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187] Length = 370 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 110/330 (33%), Positives = 179/330 (54%), Gaps = 14/330 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +MS AL+ + TS NP+V C+IV DG ++G G G PHAEV AL A Sbjct: 3 SAEDHLYMSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRMA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV ++DP+ +VSGRG++ L+ G Sbjct: 63 GDKARGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + +++++ + ++ R ++ LK+A S D +A S IT ++ Sbjct: 123 VTIQTGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RAQS AIL G TVL DDP L R L P+RII+D ++ Sbjct: 183 VQRWRAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRIV 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + + ++ + + + ++ + + DL +L+ L R + + Sbjct: 243 PSAHLF--SIPGEIWLARHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDIW 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE GA++A + +++ LVD +++Y + ++G Sbjct: 301 VEAGASLAGALMSAGLVDELMVYLAPKLMG 330 >gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 4_1_13] gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 4_1_13] Length = 369 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/367 (32%), Positives = 202/367 (55%), Gaps = 16/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EA E Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAEE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E E K ++ + +E R ++ LK ++ D I S IT I++ +V Sbjct: 125 VKLGVLEKEAKE-INKIFFKYIENRIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI T+L D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 184 QFLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNIN--IIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295 II+T ND+ L + KN+ I+ + + ++ +L L + S+L+EGG Sbjct: 244 N-DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + + + ++D+ ++ + +IG+ P G+ NF + + S+ Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDSS-AVPFINGF---NFDSMEDVFKLSNPKFNIY 358 Query: 356 GKNLCLQ 362 G N+ ++ Sbjct: 359 GDNISIE 365 >gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1] gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas putida F1] Length = 376 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 181/339 (53%), Gaps = 27/339 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 8 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI Sbjct: 68 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG +++ V Sbjct: 128 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L +VLAD+ +T R L +P+R+++D +L L + Sbjct: 188 RLRARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGRLRLPLAA 247 Query: 235 KIIKTALLAPVIIVTE-NDDPVLA------LAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + P ++VT DDP A L+ N + DL LL L RGV Sbjct: 248 PFFQA---GPTLVVTAVADDPRYAAAGHELLSLPGDNGQV------DLGALLHALAARGV 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+E GA + +F LVD L+ + +G P Sbjct: 299 NEVLLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARP 337 >gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes HOxBLS] gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes HOxBLS] Length = 374 Score = 192 bits (488), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 108/322 (33%), Positives = 176/322 (54%), Gaps = 12/322 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM AL +R L S NP V C+IV++G ++G G T G HAE++AL EA GE+ Sbjct: 19 FMKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSRGED 78 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGAT YVTLEPC+H+GR+PPCA ++ G+ RV+ ++DP+ V+G+GL+ L GI + Sbjct: 79 CRGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAGIHV 138 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + +L+R R + +K+A S D ++ S IT ++ H Sbjct: 139 ICGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKAREDGHR 198 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ++DAI+ GIGTV+ D+P L RL P+RI++D K LD+++++ Sbjct: 199 WRMRADAIMTGIGTVIQDNPRLNVRLPDAVRQ-PVRIVVDSQLKTPLDARVLEE---GKT 254 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I + N P A ++K + + DL +++ L + + + VE GA + + Sbjct: 255 WIFSANASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATLNGA 314 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 + LVD +++Y + +G G Sbjct: 315 LMQESLVDEMLIYLAPCFLGSG 336 >gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 364 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 195/363 (53%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I S ITG ++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis ATCC 29906] gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis ATCC 29906] Length = 385 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 125/335 (37%), Positives = 176/335 (52%), Gaps = 26/335 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AGE Sbjct: 18 DETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAGEN 77 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI V Sbjct: 78 AKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDV 137 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M+ K+ + + R +I LK+A S D +A S IT S+ V Sbjct: 138 SHGVLMQEAEKLNI-GFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQ 196 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233 RAQ+ AIL TVLADDP + R L + P+RII D +++ D Sbjct: 197 NFRAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTPD 256 Query: 234 SKIIKTA---LLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 KI + A LLA E+ D + L KN ++ DL L+ L R + Sbjct: 257 YKITQLAGECLLARTHSQQEDWQGDVSEILLPTNGKNSSV------DLVLLMMQLGKRNI 310 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 S+ VE GA A + + LVD +I+Y + ++G+ Sbjct: 311 NSIWVESGAHFAGALLELGLVDELIIYIAPKILGD 345 >gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC 51599] gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC 51599] Length = 385 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 178/329 (54%), Gaps = 18/329 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M A+ + V T NP V C+IV+DG V+G G G PHAEV AL++AGE Sbjct: 6 DRRAMQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQAGER 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+ PCA ++E G+ RVV ++DP+ V+G+GL L GI V Sbjct: 66 ARGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAGIDV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + +++R R + LK A S D I + S ITG ++ H Sbjct: 126 RCGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTDGHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLA 243 RA++ AIL G GTV AD+P LT R + E P+R+++D ++S + I +A Sbjct: 186 WRARASAILTGSGTVQADNPALTVR-HVATERQPVRVLVDARLQVSEHAAIFGPGETWVA 244 Query: 244 PVIIVTENDDPVLALAFRK----KNINIIY---CDCR--DLKKLLTILVGRGVTSLLVEG 294 + DD R+ + + ++Y D R DL L+ + G + VE Sbjct: 245 HAMPPDWPDD-----GHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVEA 299 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GA + + I + VD ++LY + ++G+G Sbjct: 300 GAGLNAALIQAGCVDELLLYVAPALLGQG 328 >gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str. Eklund] gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str. Eklund] Length = 372 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 193/374 (51%), Gaps = 18/374 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +FM A+ S+ G T NP V +IVKD +IG+G G HAEV AL+ A E Sbjct: 1 MELKFMKKAIELSKLGAGYTYPNPLVGAVIVKDNKIIGQGYHERFGGLHAEVNALKNATE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI Sbjct: 61 DVTGATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIK 120 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E E K ++ K+ LK A++ D I S I+ IS+ VH Sbjct: 121 VTVGIFEEEIKKINEIFIKYITTKKPFCILKTAMTLDGKIATVTGDSKWISNEISRQYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + I+VGIGTVL DDP LT RL RII+D ++ L+SK++ Sbjct: 181 KIRHRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVDSKGRIPLNSKVLNLDSKEK 240 Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 II T D +KK +I + DL+ L+ L + S+L+EGG + Sbjct: 241 TIIATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMNELGKINIDSILLEGGGTLN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKN------FMCVRRDYFGSDVCL 352 +S +N +VD +I + S +IG +P+ EG KN F + F DV + Sbjct: 301 YSALNEGIVDKVISFISPKIIGGQDAKTPVAGEGI--KNISDAVTFHNIEISRFEEDVVI 358 Query: 353 E-YIGK--NLCLQE 363 E YI K +C QE Sbjct: 359 EGYIKKENKVCSQE 372 >gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus ATCC 19194] gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus ATCC 19194] Length = 366 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 195/358 (54%), Gaps = 24/358 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A+ Sbjct: 15 WMQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQAGENAKD 74 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+ Sbjct: 75 ATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVETG 134 Query: 130 MESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + +E L+ +L ++ LKIA S D MA S ITG +++ V RA Sbjct: 135 VCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHWRA 194 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAP 244 S A++ GI TVLADD EL R L G+ ++ P RIILD +L L +KI+K Sbjct: 195 ISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILK------ 248 Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 N + V+ + FR++ ++ +I + L +LL L + + +LVE GA ++ Sbjct: 249 ------NPETVMVMTPFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +F+ LVD +I Y + ++G+ + + ++ F V G D+ L + Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLL 360 >gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630] gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42] gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255] gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Clostridium difficile] Length = 370 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 6/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ A + Sbjct: 10 DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAINSAKQS 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L I V Sbjct: 70 LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDNNIDV 129 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + A+ KR +K AVS D I S I+ S+ H Sbjct: 130 TVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K + Sbjct: 190 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDK-TSKT 248 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T + + ++ N+ I + DL+ ++ L + S+LVEGGA + S Sbjct: 249 IVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 ++LVD + L+ S +IG P+ Sbjct: 309 LFRNKLVDKVKLFLSPKIIGGKDAPT 334 >gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC 33386] gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC 33386] Length = 363 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 116/323 (35%), Positives = 181/323 (56%), Gaps = 10/323 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + +G + NP V ++VKDG V+G+G G PHAEV AL+EAG+ Sbjct: 2 DKKYMEMALEIAEKGLGHVNPNPLVGAVVVKDGTVVGKGYHGVYGGPHAEVYALDEAGKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA YVTLEPCSHYG++PPCA+ IIE GI+R V DP+ VSG+G++ L + I V Sbjct: 62 AEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIEV 121 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E A+ EK ++ LK A++ D I S I+ ++ +V Sbjct: 122 HTGVLKEECDNINKAFFKYIKEKIPYLFLKCAITLDGKIASRNGDSKWISNETAREKVQF 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + I+VGIGTVL D+P LT R+ NG+ +P+RII+DPH K++ + II Sbjct: 182 YRNKFMGIMVGIGTVLNDNPRLTARIENGV---NPLRIIVDPHLKVNTELNIISNNYDKK 238 Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL---VGRG-VTSLLVEGGAAVA 299 II+T EN+ + + I + D + ++ + +GR + S+L+EGG + Sbjct: 239 TIIITSENNTGTAKYSELENEFGIKFITLPDYEFSVSDILRELGRAKIDSVLLEGGEKMI 298 Query: 300 HSFINSRLVDSIILYRSQIVIGE 322 + +L+D ++ S ++G+ Sbjct: 299 SKAFSEKLIDGGEIFISDKILGD 321 >gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 386 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 189/359 (52%), Gaps = 14/359 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD + M L +R +G TS NP V +IV++GI+IG G G PHAEV AL +A Sbjct: 26 TEFDRKMMQRCLTLARQALGRTSPNPLVGSVIVQEGIIIGEGFHPGAGQPHAEVLALRQA 85 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ARGAT YV LEPC+HYGR+PPC++ I+ GI++VVV + DP+ V+G+G+Q L+ G Sbjct: 86 AEKARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAG 145 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + ESE + ++ R K+ LK A++ D I S IT S+ Sbjct: 146 IETLVGVEESECRQVNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 205 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+ DAI+VG TV D+P LT +GL H+P+R+++ L + + T+ Sbjct: 206 VHQLRSACDAIIVGGSTVRQDNPHLTT--HGLCNHNPLRVVMTRSLDLPPSAHLWDTSQF 263 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P ++ T+ D V L K + +I ++ L RG +L E G ++ + Sbjct: 264 -PTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 322 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353 I +V II + + +I GGI +P G L M V +Y D+ +E Sbjct: 323 AIAEGMVQKIIAFIAPKII--GGINAPTAVGDLGFQLMSQALQLENVTVNYLNPDILIE 379 >gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidithiobacillus caldus ATCC 51756] gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidithiobacillus caldus ATCC 51756] Length = 369 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 189/367 (51%), Gaps = 16/367 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V ++V+DG ++GRG G HAEV AL +AGE ARGA Sbjct: 1 MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YVTLEPC H+GR+PPC I+ G+ RVV+ + DP+ RV G G+ L Q+G+ V+ Sbjct: 61 TLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVELGC 120 Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E L+ ++ R R I LK A S D + +A S +TG ++ V RA Sbjct: 121 LAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRERAA 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AI+VG+GTVLAD+P L R++ P +IILD H + D+ + T + I Sbjct: 181 ASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTP--GEIWIFH 238 Query: 250 END-DPV--LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 D DP + L R ++ + + DL L T L R +LVE G +A S Sbjct: 239 GQDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATSL 298 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGK- 357 + VD +LY + ++GEG P+ Y + ++ R + DV L+ + Sbjct: 299 LRGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKLQLLSAE 358 Query: 358 -NLCLQE 363 CLQE Sbjct: 359 GQSCLQE 365 >gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC 19707] gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27] gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus oceani ATCC 19707] gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27] Length = 365 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 111/327 (33%), Positives = 180/327 (55%), Gaps = 14/327 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG A+G+ Sbjct: 1 MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIRAQGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ V+ + Sbjct: 61 TCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVEHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + ++ R V+ R + K+A+S D +A S IT ++ V RA+ Sbjct: 121 LQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALL 242 S AIL GIGTV+ DDP L R LQ+ P+R++LD + ++++ +L Sbjct: 181 SSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLL--SLR 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 PV+IV + A + R + + +I DL L+ +L R + L VE GA + Sbjct: 239 GPVMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGARL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 A S + + L+D ++LY + ++GE + Sbjct: 299 AGSLLQAGLMDELVLYIAPKLMGEAAL 325 >gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26] gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932] gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55] gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34] gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79] gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196] gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium difficile R20291] gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58] gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196] gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291] Length = 367 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 114/326 (34%), Positives = 171/326 (52%), Gaps = 6/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ A + Sbjct: 7 DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAINSAKQS 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L I V Sbjct: 67 LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKDNNIDV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + A+ KR +K AVS D I S I+ S+ H Sbjct: 127 TVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K + Sbjct: 187 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDK-TSKT 245 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T + + ++ N+ I + DL+ ++ L + S+LVEGGA + S Sbjct: 246 IVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 305 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 ++LVD + L+ S +IG P+ Sbjct: 306 LFRNKLVDKVKLFLSPKIIGGKDAPT 331 >gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 367 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 123/328 (37%), Positives = 183/328 (55%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQDAEAINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP +T R N L QE+ P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWNELNADTQALYPQENLRQPLRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 +I++ I T+ D + R +I + + +L +L+G+ V S+ VE Sbjct: 243 RIVQQPGET-WIARTKEDSRDWPESVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD +I+Y + ++G Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLG 327 >gi|303231427|ref|ZP_07318158.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-049-V-Sch6] gi|302513864|gb|EFL55875.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-049-V-Sch6] Length = 406 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 183/352 (51%), Gaps = 38/352 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGYN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI V Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123 Query: 127 --DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 D ++ ++ H + Q K +T+K A+S D I S IT S+ H Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHK-PFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDP 226 +LRA DA+LVGIGT+LADDP L CRL N L+ H P IILD Sbjct: 183 VLRATHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDS 242 Query: 227 HFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALA-------------FRKKNINIIYCD 271 + D+K+ +I V + + +ALA R+ + D Sbjct: 243 QGRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVKELPTKSVRQGRTTDVAID 302 Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG Sbjct: 303 IKKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIG 354 >gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera pallida ATCC 43644] gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera pallida ATCC 43644] Length = 387 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 125/325 (38%), Positives = 177/325 (54%), Gaps = 16/325 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68 M AL + G NP V LIV+ G V+GRG G PHAEV+AL + A R Sbjct: 1 MRLALALAERGRGHVEPNPMVGALIVRGGEVVGRGWHRRFGGPHAEVEALRSLSDPALAR 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127 GAT +VTLEPC H G++PPC Q I+E GI RVV + DP +V+G GL L G+ V Sbjct: 61 GATLFVTLEPCCHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEVCH 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+ + AYL + + R ++T K A++ D A S I+ S+ +VH LR Sbjct: 121 GLEETAARRLNAAYLKQVLIGRPYVTAKWAMTLDGKTAAATGDSRWISNERSRARVHELR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI+VGIGT LADDP LT R G +P RI+LD +L L S++++T AP+ + Sbjct: 181 GRMDAIVVGIGTALADDPLLTVRPPG--PRTPTRIVLDSQARLPLSSRLVRTIDQAPLWL 238 Query: 248 VTENDDPVLAL-AFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLVEGGA 296 V D P L A + + + D+++ LL L G+T LLVEGG Sbjct: 239 VHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGVPIVPLLDELGREGMTHLLVEGGG 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 VA +F ++ +D++ ++ + VIG Sbjct: 299 RVAGAFFDAGAIDALEVFIAPRVIG 323 >gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8] gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8] Length = 372 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 181/329 (55%), Gaps = 8/329 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ D +M+ ALR + + T NP V C+IV+D ++G+G G PHAEV AL + Sbjct: 4 LSTSDHTYMNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFALRQ 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GA YVTLEPCSH+GR+PPC Q +I +RVV+ + DP+ V+GRG+ L + Sbjct: 64 AGALAEGADVYVTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTALRAQ 123 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V + + + L+ ++ R ++ KIA S D ++ S ITG ++ Sbjct: 124 GVEVVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEAARQ 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RAQS AIL GIGTVLAD+P +T R P+R+I+D +L L+S +++ + Sbjct: 184 DVQHWRAQSCAILTGIGTVLADNPSMTVRFP-TATRQPLRVIVDSKLQLPLNSNMLEPTM 242 Query: 242 LA--PVII--VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295 LA PV++ V + + LA + I + DL +LL +L R V +LVE G Sbjct: 243 LAQSPVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLVEAG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + +++ L+D I Y + ++G Sbjct: 303 QGLNGGLLHAGLIDEFIFYYAPKLMGSAA 331 >gi|197283994|ref|YP_002149866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis HI4320] gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis HI4320] Length = 385 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 125/334 (37%), Positives = 174/334 (52%), Gaps = 26/334 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AGE Sbjct: 18 DETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAGEN 77 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI V Sbjct: 78 AKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDV 137 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M+ K+ + + R +I LK+A S D +A S IT S+ V Sbjct: 138 SHGVLMQEAEKLNI-GFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQ 196 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233 RAQ+ AIL TVLADDP + R L + P+RII D +++ D Sbjct: 197 NFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPD 256 Query: 234 SKIIKTA---LLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 KI + A LLA E D + L KN ++ DL L+ L R + Sbjct: 257 YKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSV------DLVLLMMQLGKRNI 310 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 S+ VE GA A + + LVD +I+Y + ++G Sbjct: 311 NSVWVESGAHFAGALLELGLVDELIIYIAPKILG 344 >gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202] gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202] gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Edwardsiella tarda FL6-60] Length = 373 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 178/340 (52%), Gaps = 22/340 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV AL Sbjct: 3 MSAAHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVHAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Sbjct: 63 RMAGELARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI V +M +E + +L R ++ LK+ S D MA S IT + Sbjct: 123 QAGISVRHGVMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHF 228 + V RAQS AIL TVLADDP LT R L QEH P+R+I+D H Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWASLDEATQRLYPQEHLRQPLRVIVDSHN 242 Query: 229 KLSLDSKIIKT---ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 +++ ++I LLA V T+ V LA + + DL L+ L Sbjct: 243 RVTPQHRLITQPGETLLARVDPDTQAWPSSVSQLAVPRHGEGL------DLVLLMMQLGK 296 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + S+ VE G +A + + + LVD +I+Y + ++G+ Sbjct: 297 MQLNSVWVEAGPRLAGALLQAGLVDELIVYLAPTLLGDAA 336 >gi|320108304|ref|YP_004183894.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4] gi|319926825|gb|ADV83900.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4] Length = 397 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 202/376 (53%), Gaps = 31/376 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R M AL +R GL S NP V C++ ++G+G Y HAE+ AL++A Sbjct: 6 TEIDRRHMEQALTLARATSGLASPNPQVGCVLAHGEEIVGQGAHRYVARDHAEIVALKQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 +A+GATAYVTLEPCSH+GR+ PCA +IE G+ RVV DP+ +VSG G+ + Q G Sbjct: 66 DGKAKGATAYVTLEPCSHHGRTGPCANALIEAGVARVVAATLDPNPKVSGSGMARIEQAG 125 Query: 124 IIVDR-MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVP-- 173 I+ ++E + + F H LTRQ +TLK A+S D + G+ P Sbjct: 126 IVAQHGLLEEQARAMNDAFAHYILTRQ----PLVTLKSALSVDGKLAPLPANRIGNSPFW 181 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 +TG ++ +VH LR +DAIL G+GT++ADDP LT R N + RI+LD H +L L Sbjct: 182 LTGTAAREEVHRLRHSNDAILTGVGTLIADDPLLTDRSNLPRRRPLQRIVLDTHLRLPLT 241 Query: 234 SKIIKTALLAPVIIVT-----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVG 284 ++I+ T +I+ + E + L R ++++ I D+ L +L Sbjct: 242 ARILDTINDDLIILCSARAPDETQKHLRTLGVRVEHVSEILTKRGTHELDIPGTLKLLGT 301 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLE-EGYLEKN 337 + S+L+E G ++ +F+++ +VD +L+ ++ +G +P SP +L+K Sbjct: 302 FDLLSVLLEAGPSLNTAFLDADMVDKAVLFFAETELGNDALPFAYGNHSPFRLVEHLQKV 361 Query: 338 FMCVRRDYFGS-DVCL 352 C ++ GS D C+ Sbjct: 362 ARCDFQNESGSLDACI 377 >gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT 12066] gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT 12066] Length = 366 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 180/328 (54%), Gaps = 19/328 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ + TS NP+V C+IV++G++IG G G PHAE+ A+ AG GA Sbjct: 1 MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSAGSSVAGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPCSHYGR+PPCA+ +++ G++RVV+ DP+ +V+GRG++ L GI VD + Sbjct: 61 TCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVDVGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E++ A+ V+ ++T+KI +S D I ++ S IT S+ V +RA Sbjct: 121 YENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKMRAA 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDSKIIK 238 SDAI+ G GTV+AD+P L R + L +E P+R++LD +++ D ++ Sbjct: 181 SDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDYVMF 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293 + V++V + D +++ I Y C + +L+ L R +LVE Sbjct: 241 SQ--GKVLLVRPSLDSKNISEQINEHLEIFYAPCDFAGRICISAVLSELSKRQCRKVLVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G + SF+ RL D + L+ + V+G Sbjct: 299 AGPTLVASFLQERLADELALFVAPKVLG 326 >gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1] gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23] gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1] gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23] gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 364 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 184/332 (55%), Gaps = 17/332 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV AL A Sbjct: 5 SADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L G Sbjct: 65 GDRARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + SL ++ Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLR-SLSCVKVRDG 243 Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 AP + + PVL ++++ R DL+ +L +L RG+ + VE Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEA 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA + + +++ LVD +++Y + +++G+ P Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328 >gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470] gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470] Length = 434 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 119/326 (36%), Positives = 178/326 (54%), Gaps = 9/326 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM+ AL + +G T NP V ++VKDG +IG G + G PHAEV A + + Sbjct: 6 DKKFMARALELAANGMGHTRPNPMVGAVLVKDGEIIGEGWHEFYGGPHAEVNAFADCRAD 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPCA I+ + RVVV + DP+ VSG+G++ L GI V Sbjct: 66 PAGATLYVTLEPCCHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKLKDAGIFV 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +ME E ++ ++ EK+ + K AVS D S I+ S+ +V Sbjct: 126 TTGVMEKEAQVLNEVFMKFITEKKPFVLYKSAVSMDGKTACHTGKSQWISSEESREEVRT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR A++ G GT+ ADDP LT R GL++ P+RII+D +S++S++ + Sbjct: 186 LRGLYAAVMAGAGTIAADDPLLTARTEGLED--PVRIIVDGKLSVSMESRVFGGESRV-I 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ T + AF+ K I +I+ D C DL+ + L +G+ S+L+EGGA A Sbjct: 243 VLTTSSAASEKVKAFQSKGIEVIFADSDTEGCVDLEAAMIGLAVKGIDSILLEGGAETAA 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326 + + +VD I Y + I+IG P Sbjct: 303 AAFEAGIVDKIRFYMAPILIGGKDAP 328 >gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120] gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120] Length = 396 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 190/359 (52%), Gaps = 14/359 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G+ L G Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAG 154 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +E + ++ R V K+ LK A++ D I S +T ++ + Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRIVHKKPLGILKYAMTLDGKIATTSGHSAWVTNPSARGE 214 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT G+ H+P+R+++ L LD+ + +T + Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQMDLPLDAHLWET-VE 271 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +++T+ +P ++K + I+ + +++ L RG S+L E G +A S Sbjct: 272 APTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYDRGFCSVLWECGGTLAAS 331 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353 I V I+ + + +IG P+P+ G L + M VR GSD +E Sbjct: 332 AIAQGAVQKILAFIAPKIIGGSHAPTPV--GDLGFDTMTEALILERVRWRVVGSDCLVE 388 >gi|254474397|ref|ZP_05087783.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11] gi|214028640|gb|EEB69475.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11] Length = 358 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/315 (39%), Positives = 178/315 (56%), Gaps = 7/315 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL R G NP+V C+IVKDG ++GRG T GG PHAE +AL AG ARGA Sbjct: 1 MSLALSLGRRGQGQCWPNPAVGCVIVKDGRIVGRGWTQPGGRPHAEPEALARAGALARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPC+H+G++PPCAQ +I+ G++RVV ++D D RVSG G L GI V + Sbjct: 61 TAYVSLEPCAHFGKTPPCAQALIDAGVKRVVAAIEDSDPRVSGHGFAMLRDAGIEVTTGI 120 Query: 131 ESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ HA + + + R +TLK+A S D I A S ITG ++ VH +RA+ Sbjct: 121 CADEAARDHAGFFLKTEQGRPFVTLKLANSFDGRIATATGESKWITGPDARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV- 248 DA++VG GT ADDP LT R G+ P+R+++ H L L ++ +TA P+ I Sbjct: 181 HDAVMVGGGTARADDPSLTVRDMGISRQ-PVRVVISRHLDLPLMGQLARTAKDVPLWICH 239 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ +I+C L+ +L L G+T + EGG+ +A S + Sbjct: 240 GSGADADRLRAWEGVGATLIHCASDGLQLEAADVLQQLGQAGLTRVFCEGGSGLAASLLK 299 Query: 305 SRLVDSIILYRSQIV 319 LVD +I + + +V Sbjct: 300 QDLVDELIGFTAGVV 314 >gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chromobacterium violaceum ATCC 12472] gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chromobacterium violaceum ATCC 12472] Length = 368 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/328 (38%), Positives = 178/328 (54%), Gaps = 14/328 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62 S+ D +M ALR + + NP V C++V G V+G G T G HAEVQA+++ Sbjct: 5 SADDYLYMQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQAIKDC 64 Query: 63 --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 GE RGATAYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP VSGRG+ L Sbjct: 65 LARGESPRGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGIAMLR 124 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ +ME++ + +L+R R +TLK A + D + S ITG + Sbjct: 125 AAGVEASAGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWITGPEA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIK 238 + V LRA AIL G GTVLADDP+LT R LQ S P R++LD + +++ + Sbjct: 185 RMDVQRLRAAHCAILTGSGTVLADDPQLTVRE--LQVASQPWRVVLDGDLRTDPAARVYQ 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 + D LA AFR + + ++ DL LL L GRGV L+VE Sbjct: 243 GG--GAWLASCAADAGRLA-AFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEA 299 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322 GA + + + + LVD I+LY + + G+ Sbjct: 300 GAGLNGAMLRAGLVDEIVLYLAPSLAGD 327 >gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM 5427] gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM 5427] Length = 363 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 199/364 (54%), Gaps = 31/364 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G S NP V ++VK+G +IG G G HAEV A++ A +++ G Sbjct: 5 YMRYALNLAKQGGGKVSPNPLVGAVLVKEGRIIGEGYHEVYGANHAEVNAIKSASQKSEG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPC+HYG++PPC + II+ I RVVV + DP+ V+G G++ L GI ++ Sbjct: 65 ATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIEVIVG 124 Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E +IF+ Y+T+Q + LK A++ D I S ITG S+ VH Sbjct: 125 ILEEECRKLNEIFIK-YITKQ---EPFVLLKAAMTLDGKIATVAGQSKWITGEASREMVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR ILVGIGTV+ DDP LTCRL + +P+ I++D ++ + SKII + Sbjct: 181 QLRNAYSGILVGIGTVIKDDPLLTCRL--VSGRNPVIIVVDSTLRIPMSSKIIGGT--SK 236 Query: 245 VIIVTENDDPVLALAFRKK----NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 VII + +A+ KK + +++ + +LK+L+ L G+ S+L+EGGA Sbjct: 237 VIIAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQLGKLGIDSILIEGGA 296 Query: 297 AVAHSFINSRLVDSIILYRS-QIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFGSD 349 V S + + +VD + Y + QIV G+ P + LEE +N R G D Sbjct: 297 EVNASALEAGIVDKVQFYIAPQIVGGQAKTPVAGRGIADLEESIKVENLQIKR---IGED 353 Query: 350 VCLE 353 + LE Sbjct: 354 ILLE 357 >gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa C3719] gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa C3719] Length = 373 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 179/346 (51%), Gaps = 33/346 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNG--------LQEHSPMRIILDPHFKLS 231 V LRA+S +L T+LADD L T R G P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 L+S + P ++ T + +LAL + ++ DL KLL Sbjct: 241 LESAFYQA---GPALVATCAAASARERFQDAGHELLALPSAEGHV--------DLHKLLL 289 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L RG +LVE G +A +F LVD L+ + +G P Sbjct: 290 ELAARGANEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARP 335 >gi|322434629|ref|YP_004216841.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9] gi|321162356|gb|ADW68061.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9] Length = 373 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 192/370 (51%), Gaps = 17/370 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 S D +FM AL + L S NP V C+ V+DG +I G Y HAE+ AL++A Sbjct: 2 SQDQQFMQRALELAESTTALASPNPQVGCVFVRDGKIIAEGFHLYEARDHAEIAALKQAE 61 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + G TAYVTLEPCSH+GR+ PCA +I GI R V+ D + V G G+ L Sbjct: 62 ANGIDVAGDTAYVTLEPCSHHGRTGPCADVLIAAGISRCVIATLDANPVVRGNGVAKLEA 121 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----IT 175 GI V ++E + + A+ +TLK A+S D + +T Sbjct: 122 AGIAVTVGVLEQKARTLNDAFAWSIRHNLPMVTLKAALSVDGKLAPPPSQRQRPEPHWLT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM-RIILDPHFKLSLDS 234 G S+ +V LR SDAIL GIGTVLADDP LT R GL P+ RIILD H ++ + S Sbjct: 182 GPESRAEVQRLRHASDAILTGIGTVLADDPTLTDR-TGLPRRRPLQRIILDAHLRIPVAS 240 Query: 235 KIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLL 291 K++++A +I +N D + AL I+ + D DL+ +L+ L R + S+L Sbjct: 241 KLVESAADDLLIFCNQNAPQDRLTALEAAGAEIHQVPGTDRLDLRAILSTLHERKLLSVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGS 348 +E G ++ +F+ + LV IL+ + +GEG +P + LE+ V R FG Sbjct: 301 LEAGPSLNGAFLAAHLVQRAILFYADTELGEGALPFAEDLTNPHLLEQTMTHVTRTTFGP 360 Query: 349 DVCLEYIGKN 358 D C+ + +N Sbjct: 361 DGCVSGLLQN 370 >gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT] gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT] Length = 377 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 195/369 (52%), Gaps = 14/369 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A+ S+ VG T NP V +IVKD +IG+G G HAEV AL+ A E+ Sbjct: 9 KFMKKAIELSKLGVGYTYPNPLVGAVIVKDNKIIGQGYHERFGGAHAEVNALKNATEDVT 68 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI ++ Sbjct: 69 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E K ++ K LK A++ D I S I+ +S+ VH +R Sbjct: 129 GVFEEEIKKINEIFIKYITTKEPFCILKTAMTLDGKIATVMGDSKWISNELSREYVHEIR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + I+VGIGTVL DDP LT RL RII+D ++ L+SK++ II Sbjct: 189 HRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 248 Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCRDLK---KLLTILVGR-GVTSLLVEGGAAVAHSF 302 T D + +KK +I ++ K K L I +G+ + S+L+EGG + +S Sbjct: 249 ATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVIELGKMNIDSILLEGGGTLNYSA 308 Query: 303 INSRLVDSIILYRS-QIVIGEGGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE-YIG 356 +N +VD +I + + +I+ G+ S EG + + D F DV +E Y+ Sbjct: 309 LNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDAVTLHDIEISNFQEDVVIEGYVK 368 Query: 357 K--NLCLQE 363 K +C QE Sbjct: 369 KENKVCSQE 377 >gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein, 5-amino-6-(5-phosphoribosylamino)uracil reductase, diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. VS] gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein, 5-amino-6-(5-phosphoribosylamino)uracil reductase, diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. VS] Length = 365 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 10/322 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V Sbjct: 62 GAALYVTLEPCCHQGRTPPCTGSIIESGIKEVYIATLDDNPLVSGKGKKELENAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVP-GN 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + A+ + ++ D R DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +LVD ++++ + I+IG Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIG 322 >gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2] gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1] gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2] gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1] Length = 366 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 23/372 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122 Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++E E K+F Y+TR + ++ +K A++ D I S I+G ++ Sbjct: 123 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH R + AI+VG+ TV+ DDP LTCRL NG +P+RI+ D + + SKIIKTA Sbjct: 179 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 235 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 I T + D +RK IIY + DL L+ L + SLL+EGG+ Sbjct: 236 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGS 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355 A+ S + ++VD + +Y + + G G SP+ +G N + + Y S V +Y Sbjct: 296 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 354 Query: 356 GKNL----CLQE 363 ++ CLQE Sbjct: 355 IESEVIYPCLQE 366 >gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 361 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/362 (33%), Positives = 196/362 (54%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I + S ITG +++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATSTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EY 354 +Y Sbjct: 357 DY 358 >gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c] gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c] Length = 364 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 182/329 (55%), Gaps = 17/329 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M AL + T NP V C+IV+DG V+G G G PHAEV AL AG+ Sbjct: 8 DYRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAAGDR 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L G+ V Sbjct: 68 ARGATAYVTLEPCAHLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTV 127 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +ME++ + +L+R R + +K+ S D +A S ITG ++ V Sbjct: 128 EHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARADVQR 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLA 243 RA++ AIL G GTVLADDP LT RL G + P+R++LD + SL ++ A Sbjct: 188 WRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLR-SLSCVKVRDG-TA 245 Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 P + + PVL ++++ R DL+ +L +L RG+ + VE GA Sbjct: 246 PTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGAT 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + +++ LVD +++Y + +++G+ P Sbjct: 300 LCGALLHAGLVDELLIYIAPLLLGDTARP 328 >gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 364 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I S ITG +++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATGTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9] gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9] Length = 383 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/340 (35%), Positives = 178/340 (52%), Gaps = 24/340 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ AL+ +R + T+ NP V C++V DG V G G G PHAE AL A Sbjct: 3 SADDHRYMARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHALAMA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH+GR+PPCA +++ G+ RVV + DP+ V+G+G+ L+ G Sbjct: 63 GERARGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++E+E +++R R +T+K+ +S D +A S ITG ++ Sbjct: 123 IECASGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-------LNGLQE------------HSPMRII 223 V RA D IL G GTV AD+P+LT R LQ+ P+R+I Sbjct: 183 VMRQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRVI 242 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTIL 282 +D L D+ I APV + T P +++ D R DL LL L Sbjct: 243 VDGAGTLDPDAAIFCG---APVRMYTAATTPATGRLHGHTVVSLPGADGRVDLAALLADL 299 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 GV + E G +A + +++ LVD ++ Y + +V+G Sbjct: 300 GRLGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGH 339 >gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91] gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Nitrosomonas eutropha C91] Length = 367 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/321 (36%), Positives = 177/321 (55%), Gaps = 4/321 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D MS AL+ + + TS NP V C+IV DG V+G G G HAE+ AL EA Sbjct: 7 TASDYMHMSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALREA 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGAT YVTLEPCSH+GR+PPC + +I + RV++ +DDP+ V+G+G + L + G Sbjct: 67 GDLARGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKAG 126 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++E E + ++TR R I KIA S D I + S ITG ++ Sbjct: 127 VEVQTGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S AIL G+ +V DDP LT R P+RI+LD + ++ L +K+++ A Sbjct: 187 GHRWRARSCAILTGVNSVKVDDPLLTVRYIETSRQ-PIRIVLDSNLEIPLQAKLLENADT 245 Query: 243 APVIIVTENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + V + + L ++ ++ DLK ++T L G+ LLVE G + Sbjct: 246 TWIFTVQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPVLNG 305 Query: 301 SFINSRLVDSIILYRSQIVIG 321 + + + L+D II Y + ++G Sbjct: 306 ALVAAELIDEIIFYFAPNLLG 326 >gi|313894496|ref|ZP_07828060.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon 158 str. F0412] gi|313440892|gb|EFR59320.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon 158 str. F0412] Length = 404 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 181/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 4 DVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + I V Sbjct: 64 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREASIEV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + SE + L+ + ++ + +T+K A+S D I S IT S+ H+ Sbjct: 124 VCPVCSEECVELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNESSRRDGHV 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG----------------LQEHSPMRIILDPHFK 229 LRA DA+L+GIGT+LAD+P+L CRL + H P IILD + Sbjct: 184 LRATHDAMLIGIGTILADNPQLNCRLTDTELSEALLDTSILDEPIHVHQPDVIILDSLGR 243 Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVL----ALAFRKKNINIIYCDCRD 274 S++ + I V+ EN ++ +++ RK I D + Sbjct: 244 TPTTSRVFEVENRKVHIFVSTGCPKDRIQALENAGAIVTVVESISTRKSKSTDIVIDIKK 303 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG Sbjct: 304 LSIDDILTKLGEIGYTSVLVEGGSAIISSFVETMNFDKVVTYIGNTIIG 352 >gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14] gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14] Length = 396 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 176/331 (53%), Gaps = 13/331 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D + M+ ALR + T NP V C+I V+G+G G PHAEV AL Sbjct: 39 PFSVLDHQHMANALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 98 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L + Sbjct: 99 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRE 158 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 159 AGIDVSEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAR 218 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-- 238 V RA++ AIL G TVLADDP LT RL + P+R++LD + SL+ ++ Sbjct: 219 EDVQHWRARAGAILTGADTVLADDPMLTVRLADAEVMPPLRVVLDSRLR-SLECSRVREG 277 Query: 239 ---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 T L I+ + + ++ ++ DL +L +L RG+ + E G Sbjct: 278 GTPTLYLHNAIVSPPDAADAAFASVALRHGHL------DLGAVLALLADRGINEVHTEAG 331 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 A +A + + VD ++LY + ++G+ G P Sbjct: 332 ATLAGALLRGGWVDELLLYLAPTLLGDSGRP 362 >gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae ATCC 35236] gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae ATCC 35236] Length = 369 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/331 (38%), Positives = 180/331 (54%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V++G ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L + P+RIILD H +++ + Sbjct: 184 FRAQSAAILSTSATVLADDPSLTVRWQELDAQTQALYPQDRLRQPVRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V ++ P V L + N + DL L+ L R + S+ Sbjct: 244 KVIQQDGPCWLARVDADEQPWPDNVEQLLLPRHNNGV------DLVLLMMQLARRQINSI 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63] gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08] gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07] gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08] gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07] Length = 370 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 169/326 (51%), Gaps = 6/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ A + Sbjct: 10 DIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDDYIIGKGYHEKFGSNHAEVNAINSAKQS 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L I V Sbjct: 70 LKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLRDNNIDV 129 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E E + + KR +K AVS D I S I+ S+ H Sbjct: 130 TVGTLEEEARDLNEVFFYYIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSRYLTHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K + Sbjct: 190 YRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKDKTSKTI 249 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + L++ ++ N+ I + DL+ ++ L + S+LVEGGA + S Sbjct: 250 VFTCCKESKKLSM-LKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGATLNDS 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS 327 +RLVD + L+ S +IG P+ Sbjct: 309 LFRNRLVDKVKLFLSPKIIGGKDAPT 334 >gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254] gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254] Length = 371 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 201/370 (54%), Gaps = 20/370 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D ++M A+ ++ G + NP V ++V+ G VIG G Y G PHAEV AL+EA Sbjct: 3 ENIDEKYMRMAIELAKKGAGPVNPNPMVGAVVVQGGKVIGTGYHKYFGEPHAEVYALDEA 62 Query: 64 GEEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + ++ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L Sbjct: 63 SKNSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILK 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + +++ E + + K ++ LK A++ D I S IT + Sbjct: 123 NAGIEVTENILKEECDKINQVFFKYIMTKLPYLFLKCAITLDGKIATKTGNSKWITNEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238 + +V R + I+VGI TVLAD+P LT R+ NG+ +P RII+DPH K D +IK Sbjct: 183 REKVQFYRNKFMGIMVGINTVLADNPSLTARIENGI---NPYRIIIDPHLKTEKDYTVIK 239 Query: 239 TALLAPVIIVT--ENDDPVLALAFRKKN-INIIYCDCR--DLKKLLTILVGRGVTSLLVE 293 + II+T EN + F + + + ++ + K++L + G+ S+L+E Sbjct: 240 ENIDEKTIIITSEENKNSEKQFDFSENSKVKFVFLNGTKFSFKEILEKIGMLGIDSILLE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFG 347 GG ++ ++D+ ++ + ++G+ S + G+ +KN ++ + +G Sbjct: 300 GGQSLISQAFEEDVIDAGEIFIANKILGDTEGKSFI-AGFDKKNMNEAIVLKNIKYNVYG 358 Query: 348 SDVCLEYIGK 357 +V E++ K Sbjct: 359 ENVGTEFLQK 368 >gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp. YO3AOP1] gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp. YO3AOP1] Length = 371 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/325 (36%), Positives = 169/325 (52%), Gaps = 10/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+++A E+ Sbjct: 10 YMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKGYD 69 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +G+T +VTLEPC HYGR+PPC IIE GI +V+ V D + V G+G+ L GI + Sbjct: 70 LKGSTMFVTLEPCCHYGRTPPCTNAIIEEGISEIVIGVLDQNPVVKGQGVNILKSHGIKV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E + + T EKR + LK+A S D I S IT S+ H Sbjct: 130 ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKTGDSKWITSEKSRQFAHQ 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++ AILVG T L D+P LT R + E P+RI++D K+ I V Sbjct: 190 LRKEASAILVGTNTALKDNPALTVR-HVETEKQPVRILIDKRLKVPPTYNIYNNEAKTIV 248 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 I L K+N+ I++ D + + +L L R + LLVEGG V Sbjct: 249 ITSKLASQENLKRLSEKENVEIVFLDLDENENFKIDDILKTLYAREIVHLLVEGGRGVIT 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325 I R D I ++ + I+IG+ GI Sbjct: 309 DLIKERKFDKISIFTAPILIGDDGI 333 >gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165] gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165] Length = 363 Score = 191 bits (485), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 184/329 (55%), Gaps = 15/329 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A+ + G T+ NP V C+IVKDG +I G G HAE A+ E+ G Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKDGKIIAEGYHQRYGEWHAERNAILHCQEDLSG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPC H+G +PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI +++ Sbjct: 66 ATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125 Query: 129 MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M++E IF H T KR ++ +K A++ D I A + ITG ++ V Sbjct: 126 VMKAECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + L+ ++++TA Sbjct: 182 CTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSRLRTPLECQLVQTAKTYR 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T +DD F+ + ++ C + DL LL L +G+ SLL+EGG+++ Sbjct: 240 TIIATVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNF 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S +N+ +V+ + Y + ++G +P+ Sbjct: 300 SALNAGIVNRVHCYIAPKLVGGVTAKTPI 328 >gi|260899221|ref|ZP_05907616.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] gi|308106651|gb|EFO44191.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] Length = 374 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 177/335 (52%), Gaps = 22/335 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L Q H P R+ILD K Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 LS D K+ T IIV+ D L K I++ L ++ + Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDVTAT-------LKAVVTQHNINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A S I + LVD +I+Y + ++G G Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1] gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1] Length = 383 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 23/372 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 20 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 79 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 80 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 139 Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++E E K+F Y+TR + ++ +K A++ D I S I+G ++ Sbjct: 140 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 195 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH R + AI+VG+ TV+ DDP LTCRL NG +P+RI+ D + + SKIIKTA Sbjct: 196 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 252 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 I T + D +RK IIY + DL L+ L + SLL+EGG+ Sbjct: 253 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGS 312 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355 A+ S + ++VD + +Y + + G G SP+ +G N + + Y S V +Y Sbjct: 313 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 371 Query: 356 GKNL----CLQE 363 ++ CLQE Sbjct: 372 IESEVIYPCLQE 383 >gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE str. F4969] gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE str. F4969] Length = 366 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 179/332 (53%), Gaps = 8/332 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI V Sbjct: 62 IEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGIEV 121 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + I L+ + E R I LK A++ D I S T S+ VH Sbjct: 122 NVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWTTNKKSREFVHS 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K + Sbjct: 182 LRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSES 241 Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T N D + + K I +I + ++ ++L L + + S+L+EGG + Sbjct: 242 KTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKININQVLACLKEKNIDSVLIEGGGNL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 SF+ ++ V+ I + + V G +P+E Sbjct: 302 NFSFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|78046354|ref|YP_362529.1| riboflavin biosynthesis protein RibD (diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 369 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 18/333 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 RA++ AIL G GTV+ADDP +T RL + P+R++LD + +L + I+ Sbjct: 188 DGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLR-TLACRNIRQG 246 Query: 241 LLAPVIIVTEN-------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + EN D LA+ + DL +L +L RG+ + VE Sbjct: 247 NAPTLYLHGENVAAPSLDDAQFLAMPLQAGRF--------DLAAVLALLAERGINEVHVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA ++ + + + LVD +++Y + +++G+ P Sbjct: 299 AGAMLSGALLQAGLVDELLVYMAPVLLGDTARP 331 >gi|28897453|ref|NP_797058.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|260366283|ref|ZP_05778739.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] gi|260876413|ref|ZP_05888768.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|260898684|ref|ZP_05907180.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|28805665|dbj|BAC58942.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|308086936|gb|EFO36631.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|308092982|gb|EFO42677.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|308112701|gb|EFO50241.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] Length = 374 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/335 (37%), Positives = 177/335 (52%), Gaps = 22/335 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L Q H P R+ILD K Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 LS D K+ T IIV+ D L K I++ L ++ + Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDLTAT-------LKAVVTQHNINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A S I + LVD +I+Y + ++G G Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium] Length = 350 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 177/322 (54%), Gaps = 21/322 (6%) Query: 4 SSFDARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 S D+ +M+ AL+ + R+ VG NP V C+IVKD +I +G G H E+ AL Sbjct: 6 SKNDSHYMAIALKLANEGRYGVG---ANPMVGCVIVKDDQIIAKGYHQTFGEAHGEINAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 ++ +A GAT YVTLEPCSH G++PPCAQ II+ G ++V++ + DP+ VSG+G+ L Sbjct: 63 KQIDHQAHGATFYVTLEPCSHQGKTPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLE 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ +ME++ ++ R +T KIA+S D M S ITG + Sbjct: 123 NSGIEVITGLMENKALELNRGFVKRMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V LRA AI+ G GT++ D+P +T RLN + SP+R+++D ++I T Sbjct: 183 RQDVQKLRANHQAIITGSGTIITDNPSMTVRLNNINS-SPLRVVIDSK------NQIQDT 235 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AL + ND P L L N+ ++ DL L L +G+ + L+E G + Sbjct: 236 AL-----NIFSNDAPTLIL--NTNNVQVLESGKLDLNDALKHLGDQGINNALLEAGPGLI 288 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 + + ++L+D I+Y + I++G Sbjct: 289 GAMLEAKLIDEFIIYTAPILMG 310 >gi|296448857|ref|ZP_06890691.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium OB3b] gi|296253636|gb|EFH00829.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium OB3b] Length = 375 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 186/370 (50%), Gaps = 21/370 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D FM+AAL F R ++G T NP+V LIVKDG+VI RG TA GG PHAE A+ Sbjct: 6 PFAQQDDAFMAAALAFGRRNMGRTGPNPAVGALIVKDGVVIARGATAVGGRPHAEAVAVA 65 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGAT Y TLEPCSH+G +PPC II GI RVV ++DPD RV+GRG L + Sbjct: 66 AAGEAARGATLYATLEPCSHHGATPPCVDAIIGAGIARVVSALEDPDARVAGRGHARLRE 125 Query: 122 KGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---IT 175 GI V R E+ H + R + R +TLK+A + D AG P IT Sbjct: 126 AGIEVAVGVRAREARADHLGH--ILRVTQGRPLVTLKLAQTADGY--AAGAEHDPRLFIT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G ++ H+ RA AI++G GT DDP LT RL GL+ P+R++LD +LS S+ Sbjct: 182 GAVADAATHIERALHGAIMIGAGTASVDDPLLTVRLPGLEGVKPLRVVLDAGLRLSRRSR 241 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-------LKKLLTILVGRGVT 288 + TA P +++ A A I L L L RGVT Sbjct: 242 LAATARETPTLVIAGEKVAEAAAAEFFDATAIEVARVAQEASGRLVLSAALAELAARGVT 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKN--FMCVRRD 344 + EGG VA S + L D ++L+ + +G G SP LE + Sbjct: 302 RVFSEGGPRVAESLLLGALADEVVLHTGRKPLGRPGRLALSPAARARLEDRAAYRLADEA 361 Query: 345 YFGSDVCLEY 354 GSD Y Sbjct: 362 MLGSDHMTRY 371 >gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UTI89] gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli APEC O1] gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli S88] gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia sp. 3_2_53FAA] gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UTI89] gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC O1] gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli S88] gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia sp. 3_2_53FAA] gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034] gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3] gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252] gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263] Length = 367 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 193/371 (52%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Roseburia intestinalis M50/1] Length = 366 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 181/333 (54%), Gaps = 18/333 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + GE Sbjct: 5 RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI+ Sbjct: 65 DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGIL 124 Query: 126 VDRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V + E + ++F H T K ++ +K A++ D I A S ITG ++ Sbjct: 125 VTEGVLQEECEYQNRVFFHYIQT----KLPYVRMKYAMTLDGKIASASGKSQWITGEAAR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+I++TA Sbjct: 181 EQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTA 238 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 II T D ++K II + D + DLK+L+ L G+ S+L+EGGA Sbjct: 239 EEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEGGA 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + S + + +V+ + Y + + G SP+ Sbjct: 299 MLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 331 >gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC 25976] gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC 25976] Length = 361 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/362 (32%), Positives = 196/362 (54%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIVLAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T KR ++ +K A++ D I + S ITG ++ Sbjct: 123 VEGLLKDECDALNPIFFHYIQT----KRPYVLMKYAMTADGKIATSTGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ +++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNVKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPPGVEVLVCKARNKRVDLQDLLQKLGDMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EY 354 +Y Sbjct: 357 DY 358 >gi|238019274|ref|ZP_04599700.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748] gi|237863973|gb|EEP65263.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748] Length = 404 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 179/349 (51%), Gaps = 34/349 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 4 DVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + GI V Sbjct: 64 AKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREAGIEV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + SE L+ + ++ + +T+K A+S D I S IT S+ H+ Sbjct: 124 VCPVCSEECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNDSSRRDGHI 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG----------------LQEHSPMRIILDPHFK 229 LRA DA+LVGIGT+LAD+P+L CRL + H P IILD + Sbjct: 184 LRATHDAMLVGIGTILADNPQLNCRLTDTELSEALLDTSILDETIHVHQPDVIILDSLGR 243 Query: 230 LSLDSKIIKTALLAPVIIVTEN--DDPVLAL-------------AFRKKNINIIYCDCRD 274 S + + I V++ + + AL A RK I D + Sbjct: 244 TPTTSHVFEVDNRKVHIFVSKGCPKERIQALEQVGALVTVVESVATRKSKSTDIVIDIKK 303 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG Sbjct: 304 LSIDDILTKLGDFGYTSVLVEGGSAIISSFVETLNFDKVVTYIGNTIIG 352 >gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619] gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619] Length = 376 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/333 (34%), Positives = 180/333 (54%), Gaps = 15/333 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 8 LDAHYMARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ L++ GI Sbjct: 68 RARGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRRLAEAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E++ + +L R + K+A+S D MA S ITG +++ V Sbjct: 128 VASGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQ 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA + +L +VLAD+ +T R L +P+R+++D +L LD+ Sbjct: 188 RLRASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGRLRLPLDA 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 + P ++VT D + +++ + + DL L+ L RGV +L+E Sbjct: 248 PFFQA---GPALVVTAMGDDTRYGQAGHELLSLPGSNGQVDLLALMQALAARGVNDILLE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA + +F L+D L+ + +G P Sbjct: 305 AGAGLVGAFAQLGLIDEYQLFVAGTFLGSQARP 337 >gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002] gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002] Length = 383 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 191/357 (53%), Gaps = 21/357 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++A Sbjct: 3 SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++ +E + +++R R + +K+A S D G+ S IT + Sbjct: 123 EAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PHRVLIDSQLDVPLDAQILAG 241 Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I D L A+A R++ I+ DL ++L++L R V L V Sbjct: 242 ---APTLIFCGELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRR 343 E G + S + VD +++Y + ++G + SP L E ++ NF V R Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVER 355 >gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM 4166] Length = 366 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 178/338 (52%), Gaps = 24/338 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AG Sbjct: 2 TTDHAWMARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI Sbjct: 62 ERARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + + R ++ K+A+S D MA S ITG ++ +V Sbjct: 122 EVASGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLD 233 LRA+S +L G TVL D LT R L + P+R+++D ++ LD Sbjct: 182 QRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLD 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLA---LAFRKKNIN--IIYCDCRDLKKLLTILVGRGVT 288 + + P ++VT V+A +R+ ++ + DL LL L RG Sbjct: 242 APFFQA---GPALVVT-----VVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGAN 293 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LVE G + +F + L+D L+ + +G P Sbjct: 294 EVLVEAGPRLVGAFASLGLIDEYQLFMAAKFLGSSARP 331 >gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 365 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 176/337 (52%), Gaps = 17/337 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D ++M A+ ++ +G TS NP V +IVKD +IGRG G HAEV AL+ Sbjct: 2 LKDIDKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDNQIIGRGWHEKYGEAHAEVNALDN 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GAT YVTLEPC H+G+ PPC IIE GI VV+ DP+ +VSG+G Q L Sbjct: 62 CQVSPNGATMYVTLEPCCHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNS 121 Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 I ++ R + +F H T R ++ LK A++ D I S ITG Sbjct: 122 EIKVTQSVLQRECDELNTVFFHYIKTN----RPYVILKYAMTADGKIATYTGESKWITGE 177 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKI 236 ++ QVH R + AI+VG+GTVL D+P L CR+ NG ++P+R+I D + S + Sbjct: 178 KARKQVHRDRDRYSAIMVGVGTVLKDNPMLNCRIENG---NNPLRVICDTKLRTPFTSNV 234 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLV 292 +KTA P +I T ++D + +I + DL +L+ +L + S++V Sbjct: 235 VKTASEIPTLIATASEDNARWRQYEAYGCKLIKIPKDGESIDLVELIKVLGENKIDSVIV 294 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 EGGA + S + + L++ + +Y + G +P+ Sbjct: 295 EGGAKLNWSILKASLMNKVQVYVGAKLFGGANAKTPI 331 >gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328] gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328] Length = 388 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 177/328 (53%), Gaps = 3/328 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL Sbjct: 9 VSEFDRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDDQIIGEGFHPGPGQPHAEIFALRS 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L Q Sbjct: 69 AGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQA 128 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V +E + L+ A++ R + K++ LK A++ D I S +TG I++ Sbjct: 129 GIEVIVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLDGKIATDTGHSAWVTGAIARQ 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR DA++VG TV D+P LT +G E +P+R+++ L +++ T+ Sbjct: 189 EVHRLRVACDAVIVGGNTVRRDNPHLTT--HGQGEPNPLRVVMSRSLDLPSSARLWDTSE 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A ++ P RKK + ++ K+++ R S+L E G +A Sbjct: 247 AATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYERQFLSVLWECGGRLASE 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 I V I+ + + +IG PSP+ Sbjct: 307 AITQGCVHKILAFIAPKIIGGQAAPSPV 334 >gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM 16069] gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM 16069] Length = 372 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/375 (31%), Positives = 197/375 (52%), Gaps = 23/375 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D+ +M+ A++ + T TNP V C++VKD I+IG G G HAE+ AL Sbjct: 1 MSFTAQDSSYMARAIQLAPRGWFTTRTNPRVGCVLVKDNIIIGEGWHEKPGFAHAEINAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE A+GATAYVTLEPC+H+G++ PCA+ ++E G+ RVV + DP+ V+G+G++ L Sbjct: 61 NHAGESAKGATAYVTLEPCAHHGKTGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILE 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + +M+++ + ++ R + + K+ +S D MA S ITG + Sbjct: 121 KAGIKTEYGLMQAQAETLNPGFIKRMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235 + V LRA+S AI+ G GTV+ D+P + R + P+R+I+D + D+K Sbjct: 181 RRDVQRLRAESGAIITGSGTVVIDNPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAK 240 Query: 236 IIK--------TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 I + L+ + +AL K ++ DLK LL +L G+ Sbjct: 241 IFSHEGHCWLVSGHLSEKGYPANVEQKTVALLPGKDEVS---HQKVDLKALLIMLAEAGI 297 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRD 344 +L+E G+ + +F+ LVD +++Y + ++G P PLE +++N D Sbjct: 298 NDVLIEAGSGLVGAFVAQELVDELVVYMAPKLMGSAARPMFQLPLET--MQQNIELTLND 355 Query: 345 --YFGSDVCLEYIGK 357 G+D+ L Y K Sbjct: 356 IRQIGNDLRLNYYFK 370 >gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) [Aliivibrio salmonicida LFI1238] gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) [Aliivibrio salmonicida LFI1238] Length = 373 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 182/342 (53%), Gaps = 25/342 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D M A++ ++ + T+ NP+V C++VK+G+++G G G PHAEV AL Sbjct: 1 MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRGL L Sbjct: 61 RQASENAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + ++LTR + + LK+A S D + S IT + Sbjct: 121 AAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQE-------HSPMRIILDPHF 228 + V RAQ+ IL TV+ D+ L R N +QE P+R+ILD Sbjct: 181 RQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL------TIL 282 +L+ + + T +VT + P L+ + + +YCD + K+L+ I Sbjct: 241 QLTSELALFNTT----GNVVTVSHQPSHPLSHPESH---LYCDLDNNKQLVLSDVIQKIA 293 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE GA +A S I LVD +I+Y + ++G G Sbjct: 294 QEHNVNHLWVEAGATLAASMICEGLVDELIIYLAPKLMGADG 335 >gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sutterella wadsworthensis 3_1_45B] gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sutterella wadsworthensis 3_1_45B] Length = 415 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 179/343 (52%), Gaps = 16/343 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +M AL +R ++ NPSV +IV++G ++G G T G PHAEV AL A Sbjct: 52 SAADDAWMDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRSA 111 Query: 64 GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E GAT YVTLEPCSHYGR+PPCA +I+ + RVV V DP+ +V GRG++ L Sbjct: 112 FERGLSVEGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRMLL 171 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + + E+E + A+LTR + +K AV+ D S ITG + Sbjct: 172 EAGIPAELGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEAA 231 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V R ++ A+L GIGTVLADDP++ RL QE P+RI++DP + K++ T Sbjct: 232 RADVQFWRGRAGAVLTGIGTVLADDPQMNVRLPD-QERQPLRIVIDPRMETPPAGKLL-T 289 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR-----DLKKLLTILVGRGVTSLLVE 293 + V I + P A + + D DL++L+ L R V + VE Sbjct: 290 SKGGKVFIAAAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVE 349 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332 G ++ + + L+D ++ Y + + G G +P P E G Sbjct: 350 AGPRLSGALFAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPG 392 >gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio peptidovorans DSM 11002] Length = 356 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/327 (37%), Positives = 182/327 (55%), Gaps = 22/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V C+I +DG ++G G G PHAE +AL A Sbjct: 7 DVTYMRRALSLAMRGTGYTSPNPMVGCVIARDGEILGEGYHRRCGAPHAEREALMSAVGG 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GATAYVTLEPCSH+G++PPCA ++E GI R VV DPD RVSGRG++ L G+ V Sbjct: 67 VAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILRSAGVDV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + ++ + +T+K A+S D + + S IT S+ + HL Sbjct: 127 SVGVLEEECRWLNRGFIKGALAGLPWVTVKAAISLDGDMSLPDGKSKWITNGTSRVKAHL 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII---LDPHFKLSLDSK-IIKTAL 241 LR++SDA++VG GTV ADDP LT R + SP+ ++ +D + ++ LD + II T Sbjct: 187 LRSESDAVMVGRGTVTADDPALTVR--DVPGKSPIPVVIGGIDENRRVFLDDRCIIYTKR 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A + N + V+ +KN + DL+ +L L G GV LLVEGG + S Sbjct: 245 FAGL-----NGERVIP----EKNGQV------DLETVLRDLYGSGVRRLLVEGGGRIISS 289 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP 328 ++ LVD + L+ + ++G+G +P Sbjct: 290 LLSDGLVDEVSLFVAPKIMGQGQTMTP 316 >gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens SM101] gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens SM101] Length = 365 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 176/332 (53%), Gaps = 8/332 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVK G +IG G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGEGYHEFFGGDHAEINAINSSVKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ + VVV DP+ VSG G++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGIEV 121 Query: 127 DRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + I L+ + E R I LK A++ D I S IT S+ VH Sbjct: 122 KVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVHS 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR + +I+VGI TVL D+P+L CRLN + E RI+LD K+ LDS+I+K + Sbjct: 182 LRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLKIPLDSEILKNQSES 241 Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T N D + + K I +I + ++ ++L L + + S+L+EGG + Sbjct: 242 KTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGNL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 SF+ ++ V+ I + + V G +P+E Sbjct: 302 NFSFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium 3_1_53] gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium 3_1_53] Length = 366 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 198/372 (53%), Gaps = 23/372 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122 Query: 126 VDRMMESEG----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V ++E E K+F Y+TR + ++ +K A++ D I S I+G ++ Sbjct: 123 VIGILEMECQQLIKVF-RKYVTRHI---PYVFMKYAMTMDGKIATYTNQSKWISGEKARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH R + AI+VG+ TV+ DDP LTCRL NG +P+RI+ D + + SKIIKTA Sbjct: 179 QVHQFRHKVTAIMVGVNTVIQDDPLLTCRLENG---ENPIRIVCDTDLRTPITSKIIKTA 235 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 I T + D +RK IIY + DL L+ L + SLL+EGG Sbjct: 236 NDIKTYIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGN 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYI 355 A+ S + ++VD + +Y + + G G SP+ +G N + + Y S V +Y Sbjct: 296 AMNWSALEQQIVDEVQIYIAPKIFG-GSAKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYF 354 Query: 356 GKNL----CLQE 363 ++ CLQE Sbjct: 355 IESEVIYPCLQE 366 >gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus ATCC 35316] gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus ATCC 35316] Length = 367 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/328 (36%), Positives = 183/328 (55%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQDAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP +T R + L QE+ P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 +I+ + T++D R +I + + +L +L+G+ V S+ VE Sbjct: 243 RIVHQPGET-LFARTKDDSRQWPEGVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD +I+Y + +++G Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPVLLG 327 >gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella dysenteriae Sd197] gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617] gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae Sd197] gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617] Length = 367 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E H P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501] gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501] Length = 359 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 176/332 (53%), Gaps = 24/332 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI + + Sbjct: 61 TAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVASGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + ++ R ++ K+A+S D MA S ITG ++ +V LRA+ Sbjct: 121 LEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVL D LT R L + P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPFFQA 240 Query: 240 ALLAPVIIVTENDDPVLA---LAFRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEG 294 P ++VT V+A +R+ ++ + DL LL L RG +LVE Sbjct: 241 ---GPALVVT-----VVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVEA 292 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 G + +F + L+D L+ + +G P Sbjct: 293 GPRLVSAFASLGLIDEYQLFMAAKFLGSSARP 324 >gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O127:H6 str. E2348/69] gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75] gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O127:H6 str. E2348/69] gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75] Length = 367 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus DSM 12680] gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus DSM 12680] Length = 364 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/334 (37%), Positives = 186/334 (55%), Gaps = 12/334 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D ++M A+ + +G TS NP V ++V +G V+G G G PHAE+ AL +AG Sbjct: 2 SIDEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEGYHQLAGTPHAEIHALNQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPC HYG++PPC II GI+RVVV + DP+ +VSG+G+ L GI Sbjct: 62 ERARGATLYVTLEPCCHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121 Query: 125 IVDRMMES----EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V+ + F ++T + + LK A++ D I S +TG ++ Sbjct: 122 EVEVGVLEEEARRANEFFFKFITTGM---PFVALKTAMTMDGKIATRTGDSRWVTGEKAR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LR DA+LVG+GTVL D+P L RL+ + PMR+ILD ++ LDS+I+ T+ Sbjct: 179 RFVHELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMRVILDGRLEIPLDSQIVLTS 238 Query: 241 LLAPVIIVTENDDPVLALA-FRKKNINIIYC-DCRDLKKLLTIL--VGR-GVTSLLVEGG 295 ++VT + +A + ++ D D L+ +L + R GVTS+LVEGG Sbjct: 239 NQQCTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLVPVLEELARLGVTSILVEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 V SF+ + LVD + + + + G P+P+ Sbjct: 299 GQVNASFLEAGLVDKVYWFIAPKICGGESAPTPV 332 >gi|238026457|ref|YP_002910688.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae BGR1] gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae BGR1] Length = 372 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 176/329 (53%), Gaps = 15/329 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL S + T+ NP V C+IVKDG+VIG G T G HAEVQA+++A Sbjct: 3 SDTDFAHMQRALDLSSRGMYTTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGAT YVTLEPCSH+GR+PPCAQ +I+ + RV+ ++DP+ VSGRGL L Sbjct: 63 RSRGHDLRGATVYVTLEPCSHFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +KIA S D + S ITG + Sbjct: 123 DAGIEVRCGLLAQEAHEMNIGFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTVL DDP LT R + P+R+++D L LD+K++ Sbjct: 183 RRDGHAWRARACAILTGIGTVLEDDPRLTVR-DIDTPRQPLRVLVDSRLDLPLDAKLLAG 241 Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLV 292 AP+++ D A A R + +I D DL +L L G+ L V Sbjct: 242 ---APILVFCGRLDAASEARAAALRDRGAEVIPLADANGKVDLPAMLAALGRHGINELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 E G + S + VD +++Y + ++G Sbjct: 299 EAGHKLNGSLLREGCVDELLVYLAPTLLG 327 >gi|206578559|ref|YP_002240118.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342] gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342] Length = 367 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARALKLATRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L + P+R+++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242 Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 +I++ A L + E P + + + + LL +L+G+ V S+ Sbjct: 243 RIVQQAGETLFARLRADERQWPESV-----RTLLVPEYNGHLDLVLLMMLLGKQQVNSVW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +I+Y + ++G +P LEE +F Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356 Query: 347 GSDVCL 352 G DVCL Sbjct: 357 GPDVCL 362 >gi|119384301|ref|YP_915357.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans PD1222] gi|119374068|gb|ABL69661.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccus denitrificans PD1222] Length = 325 Score = 190 bits (483), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 178/350 (50%), Gaps = 32/350 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G NP+V C++V+DG+V+GRG T GG PHAE AL +AGE ARGA Sbjct: 1 MRHALALARRGLGNVWPNPAVGCVLVRDGVVVGRGWTQPGGRPHAEAMALAQAGEAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+G++PPCA+ ++ G+ RVV + DPD RV+GRG L GI + + + Sbjct: 61 TAYVTLEPCAHHGKTPPCAEALVRSGMARVVTALTDPDPRVTGRGHAILRAAGIEVAEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E+E + +L+R R +TLK+A S D I A S ITG ++ VH LR Sbjct: 121 CEAEAREVQRGFLSRIQRGRPMLTLKLAASFDGRIATASGESQWITGAQARRHVHALRLG 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG T AD P L R G P+RI++ L + Sbjct: 181 HDAVMVGAETARADRPGLNVRGFG-PVRQPVRIVVSSRRLPDLPGE-------------G 226 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 P+ +A + + + L RG+T +L EGG +A S + + +VD Sbjct: 227 PEHGPLWQVAG-------------EPEAFMAELGTRGLTRVLCEGGGVLAASLLRAGMVD 273 Query: 310 SIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +I Y + +V+G G LE F V GSD+ ++ Sbjct: 274 QLIGYGAGVVLGGDGRAGIGALELEHLADAPRFRLVETRRIGSDIMHRWL 323 >gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22] gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55] gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22] gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55] Length = 367 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L + P+R+++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242 Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 +I++ A L + E P + + + + LL +L+G+ V S+ Sbjct: 243 RIVQQAGETLFARLRADERQWPESV-----RTLLVPEYNGHLDLVLLMMLLGKQQVNSVW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +I+Y + ++G +P LEE +F Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPG-LEELSQAPHFKFNEIRQV 356 Query: 347 GSDVCL 352 G DVCL Sbjct: 357 GPDVCL 362 >gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio metschnikovii CIP 69.14] gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio metschnikovii CIP 69.14] Length = 369 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/333 (34%), Positives = 180/333 (54%), Gaps = 21/333 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + M+ A++ ++ T+ NP V C+I + G ++G G G PHAEV AL A Sbjct: 6 SAVDYQMMARAIQLAQRGRFTTAPNPKVGCVITQQGRIVGEGFHYRAGQPHAEVHALRMA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E ARGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +VSGRG+ L + G Sbjct: 66 KEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGIAMLREAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E++ K+ A++ R ++ LK+A S D +A S IT ++ Sbjct: 126 IEVEVGLLEADAKVLNPAFIKRMQTGMPYVQLKLAASLDGQTALANGESQWITSAQARQD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEH------SPMRIILDPHFKLS 231 V + RAQ+ A+L TV+AD+ L R + L Q++ P R+ILD +L Sbjct: 186 VQVYRAQAGAVLSTSQTVIADNASLAVRWSELPADVQQQYPHAELRQPTRVILDRQHQLH 245 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + T +P+I V E D + + + D RD L ++ + L Sbjct: 246 QSLALYATT--SPIIRVAEQDAELCVPLNEHQQL-----DLRD--TLASLAEQYQINHLW 296 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE G +A S + +LVD +I+Y + ++G G Sbjct: 297 VEAGPTLAKSLLEQQLVDELIIYLAPKIMGSDG 329 >gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 53993] Length = 357 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/317 (38%), Positives = 177/317 (55%), Gaps = 8/317 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL + + NP V ++VKDG VIGRG G PHAEV AL+EAG ARGA Sbjct: 1 MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G++ + Sbjct: 61 TAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAEEGC 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+ + +L R R + LK A+S D + +A S +TG ++ V RA+ Sbjct: 121 LEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQERAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVGIGTVLAD+P L RL P+++I+D H + D+ + T V I Sbjct: 181 ASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTP--GAVWIFH 238 Query: 250 ENDDPV-LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D PV A +++C D ++++ +L R + +LVE G VA S Sbjct: 239 GQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLFA 298 Query: 305 SRLVDSIILYRSQIVIG 321 + L+D +LY + +++G Sbjct: 299 AGLIDEWLLYVAPLLLG 315 >gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 367 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 189/366 (51%), Gaps = 26/366 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L + P+R+++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEH 242 Query: 235 KIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 +I++ A L + P A + + + + LL +L+G+ + S+ Sbjct: 243 RIVQQAGETLFARLRADARQWPESA-----RTLLVPEHNGHLDLVLLMMLLGKQQINSVW 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +I+Y + ++G +P LEE +F Sbjct: 298 VEAGATLAGALLQAGLVDELIVYIAPKLLGNTARGLCALPG-LEELSQAPHFKFNEIRQV 356 Query: 347 GSDVCL 352 G DVCL Sbjct: 357 GPDVCL 362 >gi|282857766|ref|ZP_06266975.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens W5455] gi|282584436|gb|EFB89795.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens W5455] Length = 364 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/323 (38%), Positives = 173/323 (53%), Gaps = 16/323 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M AL + +G T+ NP V C+IVKDG V+GRG + G HAE AL +AG++ Sbjct: 7 DEHHMRQALDLALRGLGKTTPNPMVGCVIVKDGEVVGRGWHDHLGGLHAEAAALRDAGDK 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH GR PPCA +++ G+ R V V DP+ +VSGRGL+ LS G+ Sbjct: 67 ARGATVYVTLEPCSHQGRQPPCAPALVKSGVTRCVCAVGDPNPKVSGRGLKILSDAGVET 126 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + + Q +R +TLK A+S D + +A S ITG ++ + H Sbjct: 127 VCGVLEKEASWLNRGFFSLQTRRRPWVTLKAALSLDGSMALADGTSRWITGEAARAESHR 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALL 242 LR ++DAIL+G GT+ DDP LT R ++ SP +IL D+ ++K AL Sbjct: 187 LRGENDAILIGSGTLRHDDPALTVR--AVEGPSPRPVIL------CSDAAVLKGNYKALR 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+ V R + + DLK L L G+ +LVE G + Sbjct: 239 RDAIVFVPEGTAVPP--ERSGRVYAVSSSAGRPDLKAALEKLAELGLARVLVEAGPTICS 296 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 +FI + L D L+ + + GEG Sbjct: 297 AFIAAGLADEYQLFVAPVFTGEG 319 >gi|15642269|ref|NP_231902.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586201|ref|ZP_01675992.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80] gi|153820478|ref|ZP_01973145.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457] gi|153823263|ref|ZP_01975930.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33] gi|227082395|ref|YP_002810946.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2] gi|229507656|ref|ZP_04397161.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae BX 330286] gi|229512149|ref|ZP_04401628.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae B33] gi|229519284|ref|ZP_04408727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC9] gi|229607160|ref|YP_002877808.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae MJ-1236] gi|254849400|ref|ZP_05238750.1| riboflavin-specific deaminase [Vibrio cholerae MO10] gi|298500355|ref|ZP_07010160.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757] gi|9656833|gb|AAF95415.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549613|gb|EAX59637.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80] gi|126508979|gb|EAZ71573.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457] gi|126519224|gb|EAZ76447.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33] gi|227010283|gb|ACP06495.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2] gi|229343973|gb|EEO08948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC9] gi|229352114|gb|EEO17055.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae B33] gi|229355161|gb|EEO20082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae BX 330286] gi|229369815|gb|ACQ60238.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae MJ-1236] gi|254845105|gb|EET23519.1| riboflavin-specific deaminase [Vibrio cholerae MO10] gi|297541048|gb|EFH77102.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757] Length = 367 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 178/339 (52%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ ++ +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285 +L P + + + PVL +A + I + + + L L+ + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244] gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244] Length = 366 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 194/358 (54%), Gaps = 24/358 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A+ Sbjct: 15 WMQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQAGENAKD 74 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+ Sbjct: 75 ATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVETG 134 Query: 130 MESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + +E K +L ++ LK+A S D MA S ITG I++ V RA Sbjct: 135 VCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHWRA 194 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTALLAP 244 S A++ GI TVLADD EL R L G+ + P RIILD +L L +KI+ Sbjct: 195 ISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKIL------- 247 Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 +N + V+ + FR++ ++ +I + L +LL L + + +LVE GA ++ Sbjct: 248 -----QNPETVMVMTPFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +F+ LVD +I Y + ++G+ + + ++ F V G D+ L + Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLL 360 >gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli WV_060327] Length = 367 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 189/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter sp. ADP1] gi|49529501|emb|CAG67213.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter sp. ADP1] Length = 362 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 122/324 (37%), Positives = 181/324 (55%), Gaps = 20/324 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL ++ T NP+V C+IVKD ++GRG TA G PHAEV AL EAG + Sbjct: 7 DHYWMSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFALREAGVQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ ATAYVTLEPCSHYGR+PPCA +IE G+ RVV+ DP+ V+G+G L+Q GI Sbjct: 67 AQNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLNQAGITT 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + + +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 QVGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDARLDVQY 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCR----LNGLQE-HSPMRIILDPHFKLSLDSKIIKTA 240 RA+S AI+ G+ TVLADD +L R ++ L E P RIILD +L L +K+++ Sbjct: 187 WRARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTAKLLQH- 245 Query: 241 LLAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAA 297 P +V FR++ ++ ++ L++LL I + +++E GA Sbjct: 246 ---PETVVVMG-------PFRQELADLGVVQFPVLPLQQLLEHIAKEHHIYDVMIEAGAT 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 ++ +F+ LVD +I Y + ++G Sbjct: 296 LSTAFLQEDLVDEVISYVAPTLLG 319 >gi|172058721|ref|YP_001815181.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum 255-15] gi|171991242|gb|ACB62164.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum 255-15] Length = 348 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/358 (34%), Positives = 190/358 (53%), Gaps = 19/358 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ +R G TS NPSV C+I K G V G G + G PHAEV+AL AGE ARGA Sbjct: 5 MHQAMQLARMLDGQTSPNPSVGCVITKHGKVFGFGAHRFAGGPHAEVEALNMAGEAARGA 64 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPC+H+G++PPC + I+ GI+RV V +D V+G+G++ L G+ V+ + Sbjct: 65 DLYVTLEPCNHHGKTPPCTEAILAAGIKRVFVATEDRHAIVAGQGIKRLRDAGLTVEVGL 124 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-ITGFISKNQVHLLRA 188 +E E F + R ++T+K+A S + G+ G IT ++ LRA Sbjct: 125 LEDEAVRFYTPFWQSLKRNRPNVTVKVAQS---LNGIVTTGEQRFITSLAAREAGRELRA 181 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAILVG TVL DDP LT R E P+RI++D +L ++I + L + Sbjct: 182 THDAILVGSETVLVDDPALTLRTEAGPE--PIRIVVDRRGRLPETAQIFRDGLNTTYWL- 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + P ++ + N+ + +++L L +G+ S+L+EGG + +F+ + LV Sbjct: 239 --TEQPRVSA---QSNVTALVGTYATPEQILETLYAQGIHSVLIEGGPTIQSAFLEADLV 293 Query: 309 DSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI--GKNLCLQE 363 D + +Y++ V+ G G+ S +E +E F G DV L Y G C Q+ Sbjct: 294 DRLEVYQAPSVLKGMPGLASAVE---IEDRFDLTAVAPIGQDVHLRYARKGDGSCSQD 348 >gi|121729759|ref|ZP_01682198.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52] gi|147673692|ref|YP_001217785.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] gi|121628510|gb|EAX60996.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52] gi|146315575|gb|ABQ20114.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] gi|227014167|gb|ACP10377.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] Length = 367 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 180/340 (52%), Gaps = 29/340 (8%) Query: 1 MPV-SSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP+ +SFD + MS A+ + R H TS NP+V C+I + ++G G G PHAEV Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGHF-TTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVH 59 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A+ +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q Sbjct: 60 AMRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQM 119 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI V+ ++E++ ++ +L R + LK+A S D +A S IT Sbjct: 120 LRDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSP 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDP 226 ++ V RAQ+ AIL TVLAD+ L R L P+R+ILD Sbjct: 180 AARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDR 239 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR- 285 +L P + + + PVL +A + I + + + L L+ + Sbjct: 240 QHQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQ 287 Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VE G+ +A S I +LVD IILY + ++G G Sbjct: 288 HNVNQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia frederiksenii ATCC 33641] gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia frederiksenii ATCC 33641] Length = 369 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/331 (37%), Positives = 180/331 (54%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L + P RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQELDTETQARYPQDTLRQPTRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSL 290 K+I+ + V ++ P A N+ + + + DL L+ L R + S+ Sbjct: 244 KVIQQEGTCWLARVEADEQPWPA------NVEQLLLPRHGNGVDLVLLMMQLGKRQINSV 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +ILY + ++G Sbjct: 298 WVEAGPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046] gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046] Length = 367 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 115/326 (35%), Positives = 183/326 (56%), Gaps = 22/326 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + T NP+V C+IVKDG+++G G G HAEV A+ EAGE+ Sbjct: 12 DQAWMKQAIALALQGQYSTKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREAGEQ 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GATAYVTLEPC+HYGR+PPCA+ ++E G+ RVV+ DP+ V+G+G+Q L + GI V Sbjct: 72 TQGATAYVTLEPCAHYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEV 131 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + ++E +L ++ LK+A S D MA S ITG ++ V Sbjct: 132 DVGICQTEAHQLNAGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQH 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS----PMRIILDPHFKLSLDSKIIKTA 240 RA S ++ GI TVLADDP+L R L + + + P R++LD +L L ++I+ Sbjct: 192 FRAISGVVITGIETVLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQIL--- 248 Query: 241 LLAPVIIVTENDDPVLALA-FRK--KNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGA 296 + D V+ + +R+ ++ ++ + L +LL LV + ++VE GA Sbjct: 249 ---------QQPDTVMVMGPYRQALADVGVLQFAVQPLDQLLKQLVQSHQIYDVMVEAGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 ++ +F+ +LVD +I Y + ++G+ Sbjct: 300 TLSTAFLQEKLVDEMISYVAPTLLGQ 325 >gi|71898908|ref|ZP_00681075.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Ann-1] gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Ann-1] Length = 364 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 184/332 (55%), Gaps = 17/332 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV AL A Sbjct: 5 SADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCAA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L G Sbjct: 65 GDLARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARVD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + SL ++ Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLR-SLSCVKVRDG 243 Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 AP + + PVL ++++ R DL+ +L +L RG+ + VE Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEA 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA + + +++ LVD +++Y + +++G+ P Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328 >gi|257126309|ref|YP_003164423.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis C-1013-b] gi|257050248|gb|ACV39432.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis C-1013-b] Length = 371 Score = 190 bits (482), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 200/372 (53%), Gaps = 24/372 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D ++M A+ ++ + NP V ++V+ G VIG G Y G PHAEV AL+EA Sbjct: 3 ENIDEKYMRMAIELAKKGARAVNPNPMVGAVVVQAGKVIGTGYHKYFGGPHAEVYALDEA 62 Query: 64 GEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + ++ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L Sbjct: 63 SKNSKDLSNATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGVQILK 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + +++ E + + K ++ LK A++ D I S IT + Sbjct: 123 NAGIGVAENVLKEECDKLNQVFFKYILTKLPYLFLKCAITLDGKIATKTGNSKWITNEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238 + +V R + I+VGI TVLAD+P LT R+ NG+ +P RII+DPH K IIK Sbjct: 183 REKVQFYRNKFMGIMVGINTVLADNPSLTARIENGV---NPYRIIIDPHLKTEKIHNIIK 239 Query: 239 TALLAPVIIVT--ENDDPVLALAFRKKN-INIIYCDCR--DLKKLLTILVGRGVTSLLVE 293 + IIVT +N + L F + N + ++ + K++L + G+ S+L+E Sbjct: 240 ENIDEKTIIVTSEKNKNSEKQLDFSENNKVKFVFLNGTKFSFKEILEKIGTLGIDSILLE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE--------GGIPSPLEEGYLEKNFMCVRRDY 345 GG + ++D+ ++ + ++G+ G ++E + KN V+ + Sbjct: 300 GGQLLISQAFEEDVIDAGEIFIANKILGDTEGKSFIAGFDKKNMDESIILKN---VKYNI 356 Query: 346 FGSDVCLEYIGK 357 +G +V +E++ K Sbjct: 357 YGENVGMEFLQK 368 >gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759] gi|158449142|gb|EDP26137.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759] Length = 382 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/342 (35%), Positives = 179/342 (52%), Gaps = 16/342 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 F+ +M A+ ++ G + NP V +IVK G +IG G G HAE A Sbjct: 8 DEFNLAYMRRAIELAKKGTGAVNPNPLVGAVIVKAGRIIGEGYHVRYGELHAERAAFASL 67 Query: 64 GE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + EA GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+G + L Sbjct: 68 ADPAEAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFRRLRD 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++ E + + K+ ++T+K A++ D I S ITG S+ Sbjct: 128 AGIEVYTHCLKDECDALNDIFFKYIIAKKPYVTMKYAMTMDGRIATHIGASKWITGEASR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQE-----HSPMRIILDPHFKLSLDS 234 V LR + I+ GIGTVLADDP LTCR+ NG+ +P+RII D ++ DS Sbjct: 188 AYVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDTDNVRNPIRIICDSKLRIPEDS 247 Query: 235 KIIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 I++TA+ I+ T D D R+K+++II D DL +L+ IL G+G+ Sbjct: 248 NIVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIETDSTDGNVDLGQLMDILGGKGI 307 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 +L+EGG + +S ++ LVD ++ + + G G SP+ Sbjct: 308 DGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPV 349 >gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002] gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002] Length = 371 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 180/327 (55%), Gaps = 3/327 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD M + ++ G T+ NP V ++V+D +IG G G PHAEV AL EA Sbjct: 10 TDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GAT YV+LEPC+H+GR+PPC+Q +++ GI +VVV + DP+ V+G GL+ L+ G Sbjct: 70 GAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + E+ + ++ R V +R LK A++ D I S IT ++NQ Sbjct: 130 IEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAWITHQETRNQ 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V+ LR+Q DA++VG TV DDP LT +G +H+P+RI++ L D + Sbjct: 190 VYDLRSQCDAVVVGGNTVRLDDPYLTT--HGTADHNPLRIVVSQTLTLPRDRHLWDVTAA 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V++ +P + R++ + +++ D + ++ L RG +L E G +A + Sbjct: 248 PTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAA 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329 I S + ++ + + +IG G P+P+ Sbjct: 308 IASGSIQKVMAFIAPKIIGGQGAPTPV 334 >gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli IAI39] gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli IAI39] Length = 367 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 189/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 364 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 195/363 (53%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T K ++ +K A++ D I S ITG ++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KCPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 ++ S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|224370210|ref|YP_002604374.1| RibD [Desulfobacterium autotrophicum HRM2] gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2] Length = 381 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 181/328 (55%), Gaps = 14/328 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ + G T+ NP V ++VK+ V+G+G G HAEV A+++AG+ ARG Sbjct: 20 FMEQAICLAEQGRGYTAPNPMVGAVVVKNNQVVGQGWHKGPGLAHAEVNAIDDAGDLARG 79 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 + YVTLEPC+H GR+PPC + I+ GIRRV V +DP+ V+G G+++L ++G+ V Sbjct: 80 SDLYVTLEPCNHTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLKERGVAVKVG 139 Query: 128 ---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 R E+ + F+ Y+ +K+ + LK A + D + S IT S+ VH Sbjct: 140 ICRRASETLIEDFIW-YVKN--DKQPFVVLKCAATLDGQLATRTGDSKWITNEASRKYVH 196 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DAI+VG GT+ AD+P LT R+ P+R+ILD + DS++ A Sbjct: 197 RLRHWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVILDAQLSIDPDSQVFTQQSSAK 256 Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ ++ DP F+ + I ++ + DL L L RGV SLL+EGG V Sbjct: 257 TMVAISRRADPERCALFKHRGIELLVLPEKEGIIDLACLGEALGQRGVVSLLIEGGGRVV 316 Query: 300 HSFINSRLVDSIILYRS-QIVIGEGGIP 326 HS + + +V+ I L+ + +++ G G+P Sbjct: 317 HSALAAGVVNKIYLFFAPKLLGGNDGVP 344 >gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506] gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506] Length = 388 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 115/329 (34%), Positives = 177/329 (53%), Gaps = 3/329 (0%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P FDA M + +R +G T+ NP V IV+DG+V+G G G PHAEV AL Sbjct: 26 PRQDFDAAMMRRCIELARCALGKTAPNPLVGSAIVRDGLVVGEGFHPGAGMPHAEVFALR 85 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE+A GAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ VSG G+ L + Sbjct: 86 EAGEKALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLRE 145 Query: 122 KGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V +E E + A++ R + +R LK A++ D I + S +TG ++ Sbjct: 146 AGIEVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLDGKIATSSGHSAWVTGEEAR 205 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +QVH LR DA++VG TV D+P+LT G H+P+R+++ L S++ +T Sbjct: 206 SQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEG--RHNPLRVVMSRTLDLPKSSRLWETG 263 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + +++ E +P + + ++ + L R S+L E G +A Sbjct: 264 DASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYDRSFLSVLWECGGILAA 323 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S I V I+ + + ++G G PSP+ Sbjct: 324 SAIADGSVQKILAFIAPKIVGGQGSPSPV 352 >gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ] gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ] Length = 367 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 186/333 (55%), Gaps = 7/333 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ D +M A+ +R +G T+ NP+V C+IV DG+++G G G PHAEV AL Sbjct: 1 MSTSDIAYMKRAISLARKGLGRTAPNPAVGCVIVCDGVIVGEGWHKKAGTPHAEVHALAM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GA YVTLEPC H+G++PPC +I G+RRVV + DP ++V+G+GLQ L Q Sbjct: 61 AGAAAKGADVYVTLEPCCHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++E + K ++ ++ K A++ D I S +TG S+ Sbjct: 121 GVRVEVGLLEQQCKELNKGFIKSVTTGMPYLLYKTAMTMDGNIATVTGHSRWVTGEESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA DA++VG+ TV+AD+P+LT R ++ P+R+I+D + ++ Sbjct: 181 LVHRLRAHCDAVMVGVDTVIADNPQLTVR--HVRGRDPLRVIVDTRLRTPESVNVLNGTD 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +P + + + +I+ C D R ++ LL L RGV S+LVEGG+ Sbjct: 239 AGRTVIATCETNPDIHQRYLSQGADILVCREYDGRVEMTDLLRKLAVRGVQSILVEGGSR 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 +A + L+D I + + V+G G P ++ Sbjct: 299 LAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQ 331 >gi|328472537|gb|EGF43400.1| riboflavin-specific deaminase [Vibrio parahaemolyticus 10329] Length = 374 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 176/335 (52%), Gaps = 22/335 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVHAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229 V RAQS IL TV+ D+ L R + L Q H P R+ILD K Sbjct: 189 QDVQCYRAQSGGILSTSKTVMDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 LS D K+ T IIV+ D L K I++ L + + Sbjct: 249 LSDDLKLFSTE--GERIIVSSEGDVCPQLDQSGK-IDLAAT-------LKAVATQHNINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A S I + LVD +I+Y + ++G G Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 369 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 181/328 (55%), Gaps = 8/328 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLAD+P +T RL + P+R++LD + +L I+ Sbjct: 188 DVQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLR-TLACANIRDG 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + + D V A A + DL +L +L RG+ + VE GA + Sbjct: 247 -DAPTLYL--HGDAVAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + + + LVD +++Y + +++G+ P Sbjct: 304 SGALLQAGLVDELLIYMAPVLLGDTARP 331 >gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843] gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843] Length = 365 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 125/359 (34%), Positives = 187/359 (52%), Gaps = 14/359 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD M L +R +G TS NP V +IV++G +IG G G PHAEV AL +A Sbjct: 5 TEFDRTMMQRCLTLARQALGRTSPNPLVGAVIVQEGTIIGEGFHPGAGQPHAEVFALRQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ARGAT YV LEPC+HYGR+PPC++ I++ GI++VVV + DP+ V+G+G+Q L G Sbjct: 65 AEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + ESE ++ R K+ LK A++ D I S IT S+ Sbjct: 125 IETLVGVEESECLQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+ DAI+VG TV D+P LT +GL +H+P+R+++ L + + T+ Sbjct: 185 VHQLRSACDAIIVGGSTVRQDNPHLTT--HGLSDHNPLRVVMTRSLDLPSSAHLWDTSQF 242 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P ++ T+ D V L K + +I ++ L RG +L E G ++ + Sbjct: 243 -PTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353 I +V II + + +I GGI +P G L M V +Y D+ +E Sbjct: 302 AIAEGMVQKIIAFIAPKII--GGIQAPTAVGDLGFQLMSQALQLKNVTVNYLNPDILIE 358 >gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Anabaena variabilis ATCC 29413] gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Anabaena variabilis ATCC 29413] Length = 396 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/359 (34%), Positives = 191/359 (53%), Gaps = 14/359 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G++ L G Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAG 154 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +E + ++ R + K+ LK A++ D I S +T ++ + Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRILHKKPLGILKYAMTLDGKIATVSGHSAWVTNPSARGE 214 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT G+ H+P+R+++ L +D+ + +TA Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQLDLPVDAHLWETA-E 271 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +++T+ +P ++K + I+ + +++ L RG S+L E G +A S Sbjct: 272 APTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYDRGFCSVLWECGGTLAAS 331 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353 I V I+ + + +IG P+P+ G L + M VR GSD +E Sbjct: 332 AIAQGAVQKILAFIAPKIIGGSHAPTPV--GDLGFDTMTEALILERVRWRVVGSDCLVE 388 >gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR51-B] gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR51-B] Length = 371 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 186/365 (50%), Gaps = 28/365 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D +M+ AL + + NP V C++V +G VIG G T G HAE++ALE A Sbjct: 3 TSADEIYMARALALAGEARFWATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GATAYVTLEPC+H GR+ PCA +I+ G+ RVVV V DP V GRG+ L G Sbjct: 63 TADPSGATAYVTLEPCAHTGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ + + +L R + LK+A S D MA S ITG +++ Sbjct: 123 IEVSVGVLAVQASDLMAGFLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSL 232 V LRA+S AI+ GIGTVLADD LT R L P+R++LD + Sbjct: 183 VQRLRAESCAIVTGIGTVLADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPG 242 Query: 233 DSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTS 289 D++I T AP +I+T + D P A + N D R DL +L L RG+ Sbjct: 243 DARITSTG--APTLIITAPDVDAPDYAGEVEVAS-NATGHDGRLDLSAVLMQLGARGINE 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+E G +A +F+ + LVD ++LY++ ++G+ P + D Sbjct: 300 VLLEVGPTLAAAFLKAGLVDEVVLYQAPKLLGDTARP-----------LAALSIDRLAEA 348 Query: 350 VCLEY 354 V LEY Sbjct: 349 VALEY 353 >gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989] gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989] Length = 389 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 184/336 (54%), Gaps = 19/336 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 17 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTES 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE I++VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 77 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRKAGVTV 136 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S IT S+ Sbjct: 137 VEDFMGEECDRLNPVFFH-YITM---KTPYVVMKYAMTLDGKIATKTGASKWITSLASRK 192 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R Q I+VGIGTVL DDP L R+ G + SP+RI+ D ++ LDS+I+K+A Sbjct: 193 EVQHMRHQYMGIMVGIGTVLEDDPMLNVRVEGWK--SPVRIVCDSKLRIQLDSQIVKSAK 250 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 I+ +N + + + + IYC + DLK+L+ L RG+ S+L+EG Sbjct: 251 KYRTIVAYADQKNTGEKIKI-LHTRGVETIYCPDEKNQIDLKRLMIDLGNRGIDSILLEG 309 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + S + + +V + + + + G +P+E Sbjct: 310 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVE 345 >gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B str. ATCC 3626] gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B str. ATCC 3626] Length = 365 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 183/336 (54%), Gaps = 16/336 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ ++ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINSINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ ++RVVV DP+ VSG+ ++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGIEV 121 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++E E +IF + Y+ E R I LK A++ D I S IT S+ Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + +I T N D + + K I +I + ++ ++L L + + S+L+EG Sbjct: 238 QSESKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + +F+ ++ V+ I + + V G +P+E Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mannheimia haemolytica PHL213] gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mannheimia haemolytica PHL213] Length = 359 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 185/358 (51%), Gaps = 20/358 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ A+ + G TS NP V C+IVK+G +I G G HAE A+ E+ GA Sbjct: 1 MAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEEDLTGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L GI +V+ Sbjct: 61 TAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVVEDF 120 Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 M +E IF H T KR ++ LK ++ D I S ITG ++ V Sbjct: 121 MRTECDALNPIFFHYIQT----KRPYVLLKYGMTADGKIATYTGNSKWITGEAARANVQK 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VG+ TVLADDP L R+ ++ P+RI+ D + LDS++++TA Sbjct: 177 SRHEYSAIMVGVETVLADDPMLNSRMENAKQ--PVRIVCDSQLRTPLDSQLVQTARQYRT 234 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T N+D + + I+ R DL LL L G+ SLL+EGG+ + S Sbjct: 235 IIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354 + LV+ + Y + +IG +P+ + + V+ + G D+ L+Y Sbjct: 295 VLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILLDY 352 >gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans Hxd3] gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans Hxd3] Length = 363 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 132/364 (36%), Positives = 192/364 (52%), Gaps = 24/364 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM+ AL + G TS NP V ++V+DG V+G+G A G PHAEV A+++AGE Sbjct: 3 DTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVGQGFHAAAGKPHAEVVAIDDAGEL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGA YVTLEPC+H GR+PPC + I + GI RVVV D + V+G G+Q+L +GI V Sbjct: 63 ARGADLYVTLEPCNHTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRGIAV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+E K + + R +T+K A++ D I S +TG ++ VH Sbjct: 123 TVGVCEAEAKKQIEWFAKYVTTGRPFVTVKCAMTLDGRIATRTGDSKWVTGEAARAFVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R SDAILVG+GT AD+P LT R+ G++ PMRI+LD + D+ + A Sbjct: 183 MRHASDAILVGVGTANADNPRLTARVEGMRTRDPMRIVLDTKLSIREDAAMFDLDSSAET 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSLLVEG 294 +IV + KK + + R D+ L+ L G+TSLL+EG Sbjct: 243 LIV-------VGPGHDKKKRDRLKGKARFFDAALAIGRIDMAGLMDGLGKMGITSLLIEG 295 Query: 295 GAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRR---DYFGSD 349 G V + + +VD + Y +I+ G+ G+P G + KN + VR F D Sbjct: 296 GGQVIGAAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQEQMKNALPVRNVSVTRFDDD 355 Query: 350 VCLE 353 + +E Sbjct: 356 ILIE 359 >gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C] gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C] Length = 376 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 125/311 (40%), Positives = 169/311 (54%), Gaps = 16/311 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G V+G G G PHAEV AL AGE ARG Sbjct: 23 MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TAYVTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + SG G L GI + Sbjct: 83 GTAYVTLEPCNHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGAT-LRAAGIDTEAG 141 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+LT R H+T K A + D S IT S+ VH LRA Sbjct: 142 LLADEAEQGNTAWLTSVRLGRPHVTWKYAATLDGRSAAEDGSSRWITSPESRADVHRLRA 201 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++DA+LVG GT+ ADDP L R ++G + P+R+ LD L ++I+ A AP +I Sbjct: 202 EADAVLVGGGTLRADDPHLAVRGVDGAVQ--PLRVALDTRAGLPATARILDDA--APTLI 257 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 VT D L +++ RD L LL L GRGV S+L+EGG +A +F+ Sbjct: 258 VTGEDADTAHL----PGTDVLRLPLRDGRLPLGPLLAELYGRGVRSVLLEGGPTLAGAFL 313 Query: 304 NSRLVDSIILY 314 + VD ++ Y Sbjct: 314 EAGAVDRVVGY 324 >gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli SMS-3-5] gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1] gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5] gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1] Length = 367 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG +G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli CFT073] gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11] gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli ED1a] gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 83972] gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1] gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1] gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605] gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073] gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11] gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli ED1a] gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82] gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 83972] gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15] gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1] gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1] gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O83:H1 str. NRG 857C] gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1] gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2] gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1] gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli AA86] gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605] Length = 367 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 369 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/328 (35%), Positives = 181/328 (55%), Gaps = 8/328 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 8 ASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRA 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L Sbjct: 68 AGELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +M ++ + +L+R + +K+ S D +A S ITG ++ Sbjct: 128 GIEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLAD+P +T RL + P+R++LD + +L I+ Sbjct: 188 DVQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLR-TLACANIRDG 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + + D + A A + DL +L +L RG+ + VE GA + Sbjct: 247 -DAPTLYL--HGDAIAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + + + LVD +++Y + +++G+ P Sbjct: 304 SGALLQAGLVDELLIYMAPVLLGDTARP 331 >gi|255747035|ref|ZP_05420980.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholera CIRS 101] gi|262161421|ref|ZP_06030531.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae INDRE 91/1] gi|255735437|gb|EET90837.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholera CIRS 101] gi|262028732|gb|EEY47386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae INDRE 91/1] Length = 365 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +A Sbjct: 3 TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L G Sbjct: 63 GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E++ ++ +L R + LK+A S D +A S IT ++ Sbjct: 123 IEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RAQ+ AIL TVLAD+ L R L P+R+ILD +L Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVTS 289 P + + + PVL +A + I + + + L L+ + V Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVNQ 290 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE G+ +A S I +LVD IILY + ++G G Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325 >gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A] gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A] Length = 357 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 116/327 (35%), Positives = 174/327 (53%), Gaps = 14/327 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A + G + NP V +I+KDG VIG+G G HAEV A+ A E+ Sbjct: 7 TKYMKQAFNLAIKGEGFVNPNPLVGAVIIKDGKVIGKGYHKAFGQVHAEVDAINHATEDV 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--- 124 GAT +VTLEPCSH+G+ PPCA +IE GI+ V + DP+ V +G++ L GI Sbjct: 67 AGATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVH 126 Query: 125 --IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I+D + IF H Y+T KR + +K A++ D + S IT S+ Sbjct: 127 YGILDDLGLKVNDIFFH-YITT---KRPFVAMKYAMTLDGKLATKDFDSKWITNKKSRKY 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR + AILVG+ T++ DD +L R + + +P+RIILDP + + ++KTA Sbjct: 183 VHDLRNKYSAILVGVNTIIKDDAKLDVRRSK-KSKNPVRIILDPKLQTPKSTYVVKTAKT 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P IV+E D ++ + II DL KL+TIL + S+ +EGGA SF Sbjct: 242 QPTWIVSETYDQ----SYVDLGVKIIQMPTIDLDKLMTILGEAKIDSIFIEGGAYTHASF 297 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329 + + LV+ + + + +IG +P+ Sbjct: 298 LEANLVNKVYAFIAPKIIGGKNALTPI 324 >gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D] gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D] Length = 370 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 176/330 (53%), Gaps = 12/330 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C+IV+D VIG G T G HAEVQA+++A Sbjct: 3 SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +N H RA++ AIL GIGTV D+P LT R +N ++ P R+++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAINTPRQ--PRRVLIDSALDVPLDAHILT 240 Query: 239 T-ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 P +I + A ++ +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Coprococcus sp. ART55/1] Length = 382 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 178/342 (52%), Gaps = 16/342 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 FD +M A+ +R G + NP V +IVKDG +IG G G HAE A Sbjct: 8 DEFDPSYMRRAIELARRGTGAVNPNPLVGAVIVKDGRIIGEGYHVRYGELHAERAAFASL 67 Query: 64 GEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 ++A GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+G + L Sbjct: 68 KDQADAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRD 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + +++E + V K+ ++T+K A++ D I S ITG S+ Sbjct: 128 AGIEVYTHCLKAECDAINGIFFKYIVNKQPYVTMKYAMTMDGRIATHTGASKWITGEASR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDS 234 V LR + I+ GIGTVLADDP LTCR+ + +P+RI+ D ++ DS Sbjct: 188 AYVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDRDTDNVRNPIRIVCDSKLRIPEDS 247 Query: 235 KIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGV 287 +I++TA I+ T D + K ++II + DL++L+TIL G+G+ Sbjct: 248 QIVQTAGEIETIVATTAAGASDSAKCERLKDKGVSIIETEDVDGQVDLRQLMTILGGKGI 307 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 +L+EGG + +S ++ LVD ++ + + G G SP+ Sbjct: 308 DGILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPV 349 >gi|262168270|ref|ZP_06035967.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC27] gi|262023162|gb|EEY41866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC27] Length = 365 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 28/336 (8%) Query: 4 SSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SFD + MS A+ + R H TS NP+V C+I + ++G G G PHAEV A+ + Sbjct: 3 TSFDHQMMSRAIELAWRGHF-TTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E++ ++ +L R + LK+A S D +A S IT ++ Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+ L R L P+R+ILD +L Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVT 288 P + + + PVL +A + I + + + L L+ + V Sbjct: 242 H------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQHNVN 289 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE G+ +A S I +LVD IILY + ++G G Sbjct: 290 QLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325 >gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP] gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP] Length = 368 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 187/362 (51%), Gaps = 20/362 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A+ + G T+ NP V C+IVK+ +I G G HAE A+ ++ Sbjct: 3 DVDYMARAIALAEQARGWTNPNPLVGCVIVKNDQIIAEGYHQKVGEWHAERNAILNCQQD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 GATAYVTLEPC H+GR+PPC +IE GI +V V DP+ V+G+G++ L GI Sbjct: 63 LTGATAYVTLEPCCHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAAGIEV 122 Query: 125 IVDRMMESEGK---IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I D M E+ + IF H T ++ LK A++ D I A S I+G +++ Sbjct: 123 ITDFMREACDQLNPIFFHYMQT----TSPYVLLKYAMTADGKIATATGESKWISGELARQ 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V + R Q AI+VG+GTVLAD+P L R+ ++ P+R++ D H + L ++++TA Sbjct: 179 NVQITRHQYSAIMVGVGTVLADNPMLNSRMPNAKQ--PIRVVCDSHLRTPLACQLVQTAR 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 P II T + D + + II C DL LL L + S+L+EGG+ Sbjct: 237 QYPTIIATASTDSTKIAQLKAFGVQIIQCKVANKQVDLVDLLAKLGAMQIDSVLLEGGST 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE----KNFMCVRRDYFGSDVCL 352 + S + + +V+ I Y + ++G SP+ G L+ N Y G D+ L Sbjct: 297 LNFSALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLAEAVNLTLKSTQYIGDDILL 356 Query: 353 EY 354 +Y Sbjct: 357 DY 358 >gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E] gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E] Length = 373 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 113/339 (33%), Positives = 178/339 (52%), Gaps = 35/339 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ + T+ NPSV C++VK G ++G+G G PHAEV A+ EAG+ Sbjct: 8 DRAFMQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMAMREAGKN 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ +V+ ++DP+ V+G+GL+ L Q GI Sbjct: 68 AKGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKMLQQAGIET 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + + +L R ++ LK+A++ D + S ITG ++ V Sbjct: 128 AVGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGESARIDVQQ 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234 RA++ AIL GTVLAD+P L R E P+R+I+D ++S Sbjct: 188 ERAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSKQQISSQL 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----------RDLKKLLTILVG 284 + K D PV + +++ +C + L + L I +G Sbjct: 248 NLFKI------------DSPVWLAGIQPRDLTDFPANCEIICLMPEKEQSLLQALMIELG 295 Query: 285 -RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 R + S+ VE GA +A + I LVD ++LY + ++G+ Sbjct: 296 KRQINSVWVEAGAKLAGALIEQNLVDELVLYIAPKLLGD 334 >gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 364 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 194/363 (53%), Gaps = 20/363 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ E+ Sbjct: 3 DLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G+ + Sbjct: 63 LSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E IF H T K ++ +K A++ D I S ITG ++ Sbjct: 123 VEGLLKEECDALNPIFFHYIQT----KCPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNAKQ--PVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Thiomonas sp. 3As] Length = 387 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 183/340 (53%), Gaps = 23/340 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA+++A Sbjct: 9 SEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQA 68 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G E RGATAYVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ L Sbjct: 69 WERGHEVRGATAYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLR 128 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E + +++R V + LK+A S D + + S IT + Sbjct: 129 DAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSEAA 188 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 + H RA++ A+L G+GTV ADDP+L R +Q P+RI++D + ++++ Sbjct: 189 RADGHHWRARACAVLTGLGTVRADDPQLNVR--AVQTPRQPIRIVVDSRLECPATVRLLQ 246 Query: 239 TALLAPVIIV----TENDDPVLALAFRKKNINIIYCDC-----------RDLKKLLTILV 283 +A +P+ IV E P LA ++ D DL+ L+ +L Sbjct: 247 SA-DSPLWIVHALPPEQAAPRLAALRSAATASLDLQDIALPVDPDKPGKTDLRALMQVLG 305 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 RG+ L E G + S + + +VD +++Y + ++GEG Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDELLMYLAPQLLGEG 345 >gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum PSI07] gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum PSI07] Length = 370 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 174/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA ++E G+ RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILVDSGLDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 AP +I + A K +I D + DL +L L R + L VE Sbjct: 242 DDHHAPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Roseburia intestinalis XB6B4] Length = 396 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 119/333 (35%), Positives = 178/333 (53%), Gaps = 18/333 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + GE Sbjct: 35 RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 94 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GA YVTLEPC HYG++PPC Q +IE GI V V D + V+G G++ L ++GI+ Sbjct: 95 DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAKDINPLVAGGGIRQLREQGIL 154 Query: 126 VDRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V + E + ++F H T K ++ +K A++ D I A S ITG ++ Sbjct: 155 VTEGVLQEECEYQNRVFFHYIQT----KLPYVRMKYAMTLDGKIASASGKSKWITGEAAR 210 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+I++TA Sbjct: 211 EQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTA 268 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 II T D ++K II + DLK+L+ L G+ S+L+EGGA Sbjct: 269 EEQKTIIATCCQDEARIREYQKYACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGA 328 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + S + + +V+ + Y + + G SP+ Sbjct: 329 MLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 361 >gi|94311620|ref|YP_584830.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cupriavidus metallidurans CH34] gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus metallidurans CH34] Length = 373 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 178/330 (53%), Gaps = 12/330 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D M AL + + T+ NP V C+++KDG+VIG G T G HAE+QA+++A Sbjct: 3 SAADYTAMEQALALAARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + GATAYVTLEPCSH+GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L Sbjct: 63 ISRGHDPAGATAYVTLEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++E E + +++R + +K+A S D + S ITG + Sbjct: 123 DAGIDVRCGLLEKEARDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQPA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ H RA++ AIL GIGTV D+P LT R P R+++D ++ LD++I+ Sbjct: 183 RDDGHAWRARACAILTGIGTVRDDNPALTVRAIPTPRQ-PQRVLVDSRLEVPLDAQILNR 241 Query: 240 ---ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 PV++ +D A + + ++ +L+++L L RG+ L V Sbjct: 242 DTGDFAKPVLVFCAIEDKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELHV 301 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 E G + S I D +++Y + ++G+ Sbjct: 302 EAGFKLNGSLIREGCADELLVYLAPKLLGD 331 >gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M] gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M] Length = 385 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 130/358 (36%), Positives = 186/358 (51%), Gaps = 23/358 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL +R + T NP V C+IVK+G VIG G T G HAE++A+++A Sbjct: 3 SQTDFVHMERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAILR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLEVSPHAQILAG 241 Query: 240 ALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I N D A A R++ I+ DL LL +L R V L V Sbjct: 242 ---APTLIFCGNLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLEKNFMCVRR 343 E G + S + VD +++Y + ++G G P L EG ++ F V R Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLGAPETL-EGRVKLAFHNVER 355 >gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus VCS1703A] gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus VCS1703A] Length = 368 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 5/323 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R + + NP V C+IVK+ +IG G G HAE+ AL AG + Sbjct: 12 DLFYMHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAGTQ 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AR AT YVTLEPC+H+GR+PPC +I G++RVV+ DP+ V+G+G+ L GI V Sbjct: 72 ARDATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGISV 131 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + ++ + L+ + R R +TLKIA S D +A S ITG +++ VH Sbjct: 132 EQGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDVHF 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +DA+L G G+V+ D+ LT R L + P+R+++D K ++ + +P Sbjct: 192 HRLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKTPANAALFCDP--SP 249 Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++VT P ++ L LL L R + L VE G +A +F+ Sbjct: 250 ILMVTTQPPPQSFPQMVEYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGAFL 309 Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326 +LVD I+LY + +G+ P Sbjct: 310 TEQLVDEILLYLAPTFLGDSARP 332 >gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] Length = 364 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 191/366 (52%), Gaps = 16/366 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G S NP V +IVK+G +IG G G PHAEV A+ + Sbjct: 1 MNESYMRRALELAKLGAGRVSPNPMVGAVIVKNGEIIGEGYHKQYGGPHAEVNAIASVSD 60 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E G+T YVTLEPC HYG++PPC + II+ I+ VV+ DP+ V+G+G++ L +G Sbjct: 61 NGELEGSTIYVTLEPCCHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAEG 120 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ ++E E +++ K + +K A++ D I + S IT S+ Sbjct: 121 IEVIVGVLEEECLKINESFMKYIKTKTPFVIMKAAMTLDGKIATSTGDSKWITNEESRIN 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR + I+VGI TVL DDPELTCRL G SP RII+D K+ L++K++ Sbjct: 181 VHKLRNKVSGIMVGINTVLKDDPELTCRLEG--GASPKRIIVDSGLKIPLNAKVLNAKDK 238 Query: 243 APVII-VTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 VI+ T D ++ + +I ++ LKKL+ L V S+L+EGG Sbjct: 239 VEVIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLKKLMEELGNLKVDSVLLEGGGT 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + S + ++D + Y + +IG +P+E + K N +R FG D+ + Sbjct: 299 LCFSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINKIKDAINVKDLRVSTFGGDILI 358 Query: 353 E-YIGK 357 E YI K Sbjct: 359 EGYIRK 364 >gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D str. JGS1721] gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D str. JGS1721] Length = 366 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 182/336 (54%), Gaps = 16/336 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGIEV 121 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++E E +IF + Y+ E R I LK A++ D I S IT S+ Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKDFKSKWITNKKSRE 177 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + +I T N D + + I +I + ++ ++L L + + S+L+EG Sbjct: 238 QNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + +F+ ++ V+ I + + V G +P+E Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J] gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J] Length = 370 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 176/330 (53%), Gaps = 12/330 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +N H RA++ AIL GIGTV D+P LT R +N ++ P R+++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAINTPRQ--PRRVLIDSALDVPLDAHILT 240 Query: 239 T-ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 P +I + A ++ +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes 130Z] gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes 130Z] Length = 375 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/329 (35%), Positives = 176/329 (53%), Gaps = 17/329 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R T+ NP+V C++VK ++G G G PHAEV A+ +AG+ Sbjct: 8 DQAYMQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMAIRDAGDN 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 +GATAYVTLEPCSHYGR+PPCAQ +I G+ +V++ DP+ +V+GRGL+ L GI Sbjct: 68 TQGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKMLQDAGIES 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E + L +L R + LK+A+S D MA S ITG ++ V Sbjct: 128 AVGLLAEKAEAVNL-GFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEAARADVQ 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQ+ AIL TVLADDP+L R L + P+R+ILD ++ Sbjct: 187 EGRAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRRHRVQPH 246 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLV 292 ++ + + +PV +V+E + A ++I + + L L+ L R + ++ V Sbjct: 247 HRLFR--IESPVWLVSEKPRDMSAFPAFCEHIQLKTTENPTALYALMQELGKRQINTIWV 304 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 E GA +A + I L D +I+Y + ++G Sbjct: 305 EAGATLAGALIEQNLADELIIYMAPKLLG 333 >gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1] gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1] Length = 367 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814] gi|149751955|gb|EDM61886.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814] Length = 378 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 184/338 (54%), Gaps = 20/338 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + IIE I++VV+ DP+ +V+G+G Q L + GI + Sbjct: 63 AEGATIYVTLEPCCHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGITV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 123 VQDFMREECDCLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGEPARQ 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R + I+ GIGTVLADDP L R+ G + SP+RI+ D ++ LDS+I+++A Sbjct: 179 EVQHMRHRYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSSLRIPLDSQIVRSAK 236 Query: 242 LAPVIIV----TENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 I+ EN++ + K ++ + C DLKKL+T L G+ S+L+ Sbjct: 237 EYRTIVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQIDLKKLMTYLGNEGIDSILL 296 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 EGG + S + + +V + + + + G +P++ Sbjct: 297 EGGGTLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQ 334 >gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334] gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334] Length = 366 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/320 (35%), Positives = 176/320 (55%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S ITG ++ VH Sbjct: 123 TVGVLENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNHSKWITGEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHQVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SLL+EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYKNHGCEILSIKKKGNHIDLSDLMQHLGNMQIDSLLLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Slackia heliotrinireducens DSM 20476] gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Slackia heliotrinireducens DSM 20476] Length = 371 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 179/339 (52%), Gaps = 19/339 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D + M A+ +R G T+ NP V +IVKDG VIG G G HAE AL Sbjct: 2 TADEKMMRRAIELARTAAGWTNPNPLVGAVIVKDGRVIGEGCHERYGDLHAERNALASCT 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E +GAT YVTLEPCSH G+ PPCA ++E GI RVVV DP+ VSGRG+ L GI Sbjct: 62 ESPQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGI 121 Query: 125 IVDR---MMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 V+ E +G +F H T K ++ K A++ D I A + ++ S Sbjct: 122 QVEEDFLRQECDGINPVFFHFITT----KTPYVVAKWAMTADGKIATATRDARWVSCEAS 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR + I+VG+ TVLADDP L R G+ + P+RI+ D ++ LDS ++++ Sbjct: 178 RADTHELRHRLAGIMVGVNTVLADDPMLNAR-RGVPSNQPLRIVCDSSLRIPLDSALVRS 236 Query: 240 ALLAPVII-----VTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSL 290 A PV++ + + + A+ R ++++ D + DL L+ L GV S+ Sbjct: 237 ATEVPVLVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVDLAALMAHLGESGVDSV 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 LVEGG + + S LVD +++Y + V G P+P+ Sbjct: 297 LVEGGGTLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPV 335 >gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612] gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612] Length = 367 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 21/372 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G + NP V +IVK+G VIGRG G PHAE A+ E+ Sbjct: 3 DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKNGCVIGRGAHERYGGPHAERNAIAHCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + AT YVTL PC H+G++PPC ++E GIRRVV+ DP+ V+ + ++ L Q G+ + Sbjct: 63 LQDATLYVTLTPCCHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGVEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E A+ R ++ +K A++ D + A S ITG +++ +VHL Sbjct: 123 TTGILQQECDALNDAFFHFIRIHRPYVVMKYAMTMDGKVATASGKSKWITGELARERVHL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AIL GIGTVLADDP LTCR+ G ++ P+RI+ D ++ L ++I+KTA Sbjct: 183 DRKRYAAILTGIGTVLADDPLLTCRIPGGRD--PVRIVCDTKLRIPLTAQIVKTAAKTRT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T + D ++K ++ DLK L+ L + S+L+EGG + + Sbjct: 241 IIATGSGDNKKQSLLKQKGCEVLKMTVENGRIDLKALMRRLGEMAIDSILMEGGPQMNSA 300 Query: 302 FINSRLVDSIILY---------RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + S +V+ I Y +++ +G G+ SP L + G D+ L Sbjct: 301 ALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPEAAWRLSAPVIT----KLGQDILL 356 Query: 353 EYIGKNLCLQEL 364 E + CLQEL Sbjct: 357 ESEVVS-CLQEL 367 >gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 187/374 (50%), Gaps = 22/374 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL Sbjct: 4 IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRX 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q Sbjct: 64 AGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQA 123 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + SE + +L R +I LK+ S D A S IT ++ Sbjct: 124 GIDVSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARR 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKL 230 V LLRAQS AIL TVLADDP LT R + L E + P+RI++D ++ Sbjct: 184 DVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRV 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTS 289 + +I++ T+ D R + I +L +G+ + S Sbjct: 244 TPVHRIVQQPGET-WFARTQEDSREWPETVR--TLLIPEHKGHLDLVVLXXQLGKQQINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE G +A + + + LVD +I+Y + ++G +P LE+ F Sbjct: 301 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIR 359 Query: 345 YFGSDVCLEYIGKN 358 + G DVCL +G + Sbjct: 360 HVGPDVCLHLVGAS 373 >gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22] gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171] gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O103:H2 str. 12009] gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22] gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171] gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O103:H2 str. 12009] gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010] Length = 367 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQVLYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185] gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185] Length = 367 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM 20712] gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM 20712] Length = 397 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 197/370 (53%), Gaps = 19/370 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M+ A + G + NP V +IVKDG +IG G G HAE A ++ Sbjct: 21 METKDREYMNRARILADRGRGWVNPNPLVGAVIVKDGRIIGEGWHERYGGLHAERNAFKQ 80 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GAT YVTLEPC HYG++PPC + +IE I RVVV + DP+ V+G+G++ L + Sbjct: 81 CTEDPAGATLYVTLEPCCHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEMLRKA 140 Query: 123 GIIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI+V+ +E E ++FL TR R I +K A++ D I S +TG Sbjct: 141 GIVVETGVEEEKLREQNRVFLKYITTR----RPWIVMKTAMTLDGKIAAYTGDSHWVTGE 196 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S+ +V +R+ I+VG GTV ADDP L CRL G + P+RII+D ++ DS+++ Sbjct: 197 ESRKKVQEMRSVLMGIMVGSGTVKADDPLLNCRLKG-EVRQPVRIIVDSTAAIATDSQLV 255 Query: 238 KTALLAPVIIV-TENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLV 292 +TA ++ T D + ++K + I CD R DL+ L T L G+ S+L+ Sbjct: 256 RTADRYRTLVAHTSRADAGKLVQLQQKGVETILCPGCDNRVDLQALTTKLGQAGIDSVLL 315 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGG + +F+ LVD + + + +IG +P+E K ++ V + Sbjct: 316 EGGGELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVE----GKGIAWMKEAIALQSVSI 371 Query: 353 EYIGKNLCLQ 362 E +G++ ++ Sbjct: 372 EKVGEDFLIK 381 >gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UM146] Length = 361 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 191/367 (52%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes PCC 7420] gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes PCC 7420] Length = 380 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/328 (34%), Positives = 182/328 (55%), Gaps = 5/328 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD M + +R +G TS NP V +IV+DG ++G G G PHAE+ AL +A Sbjct: 23 TPFDRTMMQRCIELARRALGRTSPNPLVGAVIVRDGAMVGEGFHPGAGQPHAEIFALRQA 82 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++++GAT YV LEPC+HYGR+PPC + +I G+ +VVV + DP+ V+G G++ L + G Sbjct: 83 GDKSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKAG 142 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E+E + A++ R + KR LK A++ D I A S +TG ++ Sbjct: 143 IEVVVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLDGKIATASGHSAWVTGQEARRY 202 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR DA++VG TV D+P LT + H+P+R+++ L +D+++ +TA Sbjct: 203 VHQLRTACDAVIVGGNTVRLDNPHLTS--HDTDTHNPLRVVMSRTLDLPIDARLWETA-D 259 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +++TE +P L K + +I K + L R ++++L E G +A Sbjct: 260 APTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYDRQLSTVLWECGGTLAAR 319 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 I V ++ + + ++G PSP+ Sbjct: 320 AIADGTVQKVLAFIAPKIVGGITAPSPV 347 >gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With A Substrate Analogue, Ribose 5-Phosphate (Beta Form), Bound To The Active Site Of The Reductase Domain gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In Complex With A Substrate Analogue, Ribose 5-Phosphate (Beta Form), Bound To The Active Site Of The Reductase Domain Length = 402 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 186/372 (50%), Gaps = 22/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL Sbjct: 26 IQGQDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRX 85 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q Sbjct: 86 AGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQA 145 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + SE + +L R +I LK+ S D A S IT ++ Sbjct: 146 GIDVSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARR 205 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKL 230 V LLRAQS AIL TVLADDP LT R + L E + P+RI++D ++ Sbjct: 206 DVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRV 265 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTS 289 + +I++ T+ D R + I +L +G+ + S Sbjct: 266 TPVHRIVQQPGET-WFARTQEDSREWPETVR--TLLIPEHKGHLDLVVLXXQLGKQQINS 322 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE G +A + + + LVD +I+Y + ++G +P LE+ F Sbjct: 323 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIR 381 Query: 345 YFGSDVCLEYIG 356 + G DVCL +G Sbjct: 382 HVGPDVCLHLVG 393 >gi|153828188|ref|ZP_01980855.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39] gi|229522216|ref|ZP_04411633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TM 11079-80] gi|148876277|gb|EDL74412.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39] gi|229341141|gb|EEO06146.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TM 11079-80] Length = 367 Score = 187 bits (476), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 178/339 (52%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285 +L P + + + PVL +A + I + + L L+ + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA] gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA] Length = 370 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 DAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAVNTPRQ-PRRVLIDSALDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 P +I + A ++ +I DL +L L R + L VE Sbjct: 242 DGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD +++Y + V+G G Sbjct: 302 GFKLNGSLLREGLVDEVLVYLAPKVLGSG 330 >gi|159903849|ref|YP_001551193.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9211] gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9211] Length = 365 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 183/320 (57%), Gaps = 7/320 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M A + ++ G T+ NP V +++ D ++IG G + G PHAEV+AL +AG+ A+ Sbjct: 14 WMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAAK 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC HYG +PPC + IIE G+ RVVV + DPD RVSG G++ L + GI ++ Sbjct: 74 GGTLLVTLEPCCHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVIT 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +++ E A++ R R LK+A+S D G++ S IT ++ +VH LR Sbjct: 134 GILKEEISFQNRAFIFRIKTGRPWGILKLAMSFDGRTGLSNGKSKWITSQEAREKVHALR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DA+++G GT+ ADDP LT R GL+ P+R++ L + ++I +T A ++ Sbjct: 194 AKCDAVIIGGGTLRADDPLLTSR--GLRNPEPLRVVFSQSLSLPIGAQIWRTE-SAKTLV 250 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 N++ + + +N+ + + ++LL L +G +L E G ++A S I Sbjct: 251 AFSNENALPLIQELPENVEKLKLHESNPRELLEELAKKGCNRILWECGPSLATSAIKQNC 310 Query: 308 VDSIILYRSQIVIGEGGIPS 327 V I+++ + ++ GG+P+ Sbjct: 311 VQEIVIFMAPKLL--GGLPA 328 >gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella sonnei Ss046] gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Shigella sonnei Ss046] Length = 367 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 192/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|327484786|gb|AEA79193.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae LMA3894-4] Length = 365 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 175/335 (52%), Gaps = 26/335 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ +A Sbjct: 3 TSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L G Sbjct: 63 GELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E++ ++ +L R ++ LK+A S D +A S IT ++ Sbjct: 123 IEVEVGLLEADARVLNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RAQ+ AIL TVLAD+ L R L P+R+ILD +L Sbjct: 183 VQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLH 242 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR--GVTS 289 P + + + PVL +A + I + + L L+ + V Sbjct: 243 ------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQHNVNQ 290 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + VE G+ +A S I +LVD IILY + ++G G Sbjct: 291 VWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 325 >gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC 6301] gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC 6301] Length = 368 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 105/320 (32%), Positives = 175/320 (54%), Gaps = 3/320 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL + Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQA 120 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V +E + A++ R ++R LK A++ D I + S ++ S+ Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH LR+Q DA++VG TV D+P LTC + + + P+R+++ L L++ + +T + Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTC--HDISDRHPLRVVMSRRLDLPLEANLWQTDI 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ E D + + ++ ++ L RG+++LL E G +A + Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + L+ ++ + + +IG Sbjct: 299 ALREGLIQKLLAFIAPKLIG 318 >gi|89070868|ref|ZP_01158107.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus HTCC2516] gi|89043556|gb|EAR49766.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus HTCC2516] Length = 362 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/330 (37%), Positives = 182/330 (55%), Gaps = 9/330 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D RFM+ AL R +G T NPSV C++V+DG ++ R TA GG PHAE++AL Sbjct: 1 MNEADGRFMALALGLGRQGLGRTWPNPSVGCVLVRDGRILARARTADGGRPHAEMRALAA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + RGATAYVTLEPC+H G +P CA + G+ RVV+ D D R +G+G+ L Sbjct: 61 A--DPRGATAYVTLEPCAHVGETPACASELARAGVARVVIGCADADARTAGQGVAILRAA 118 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V + E+E + +L+R R +TLK+A S D I A S ITG ++ Sbjct: 119 GVAVTTGVREAEARALHAGFLSRVERGRPALTLKLAASLDGRIATATGESQWITGTEARR 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG GT ADDP LT R G+ P+R+++ L D ++ TA Sbjct: 179 HVHALRARHDAVMVGAGTARADDPALTVRGLGIARQ-PVRVVVSRRLDLPRDGRLAATAR 237 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYC--DCRDL--KKLLTILVGRGVTSLLVEGGA 296 P+ + D A+ ++ C D L + +L L G+TS+ EGG Sbjct: 238 DVPLWLCHGPDAAAASRAAWEAAGARLLPCAVDHGQLAPESVLAALGAAGLTSVFCEGGG 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +A S + + LVD ++ Y + +V+G G+P Sbjct: 298 GLAASLLAADLVDELVAYSAGLVLGAEGLP 327 >gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 5_1_63FAA] gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 5_1_63FAA] Length = 366 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/359 (35%), Positives = 188/359 (52%), Gaps = 20/359 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+ + Sbjct: 4 EYMRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPK 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GA YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI + Sbjct: 64 GAEIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETET 123 Query: 129 -MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++E E IF H Y+ + + LK A++ D I A S ITG ++ V Sbjct: 124 GILEEECRQLNDIFFH-YIQNDI---PYTALKYAMTLDGKIATATGESKWITGEEARRHV 179 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR Q AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA Sbjct: 180 HTLRHQYAAIMAGIGTVLADDPMLNARIE--HGNDPIRVICDSNLRISEGSNIVKTAREI 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299 P II T + D +K I+ +D +K++L L + S+LVEGG + Sbjct: 238 PTIIATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILN 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S I + V + Y + + G +P+E +E+ F ++ G+D+ LE Sbjct: 298 ESLIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 356 >gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM 3776] gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM 3776] Length = 401 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 186/375 (49%), Gaps = 41/375 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL +R VG NP+V ++V + + ++G G G PHAEV AL +AGE+ARG Sbjct: 10 MEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHALAKAGEKARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 AT Y TLEPCSH+G++PPCA +I GIR V V DP VSG+G++ L Q GI V+ Sbjct: 70 ATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKLRQAGITVNVG 129 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + L ++ Q R + K A++ D I S I+ S+ VH LR Sbjct: 130 RCADKARELLAPFVAFQCANRPWVHAKWAMTLDGKISTKTGHSHWISSEASRRTVHELRG 189 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DAI+VGIGTVL DDP+L RL + +P RI+LD +S S++++TA P Sbjct: 190 RVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPARIVLDSRLSISPHSQLVQTARKIPT 249 Query: 246 IIVTENDD-----------------------PVLALAFRKKNINIIYCDCRDLKKLLTIL 282 I+ T + V +L +I + + C L LL + Sbjct: 250 IVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSLPCGSTDIGLAHHPC--LIHLLDKM 307 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----------EG 332 G+ LLVEGGA + SF++ L+D + Y + ++G SP+ E Sbjct: 308 RAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLVGGSAAASPIAGKGRMTIFDGEE 367 Query: 333 YLEKNFMCVRRD-YF 346 + F + +D YF Sbjct: 368 FASGEFTTIDKDAYF 382 >gi|148261112|ref|YP_001235239.1| riboflavin biosynthesis protein RibD [Acidiphilium cryptum JF-5] gi|146402793|gb|ABQ31320.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium cryptum JF-5] Length = 363 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 141/358 (39%), Positives = 200/358 (55%), Gaps = 10/358 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+ Sbjct: 3 DLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGDA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G+ + Sbjct: 63 ARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ + +E + R E R +TLK+A S D I S ITG ++ H Sbjct: 123 VEGIGGAEAAEINAGFCKRIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P+ Sbjct: 183 LRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHPL 242 Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 IV + DP A + DL L ++ G+T +L EGG +A Sbjct: 243 WIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAVVGAAGLTRVLAEGGGTLAA 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + I + LVD + + + +VIG+ GI + +EE F + G D+ Y Sbjct: 303 ALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRY 360 >gi|212212876|ref|YP_002303812.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii CbuG_Q212] gi|212011286|gb|ACJ18667.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii CbuG_Q212] Length = 354 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA Sbjct: 179 QYTHEWRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +I+ N+ D +KNI I R DL ++L ++ G+ L +E G Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ L++ ++Y + ++G +P+ Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327 >gi|229528728|ref|ZP_04418118.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae 12129(1)] gi|229332502|gb|EEN97988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae 12129(1)] Length = 367 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 177/339 (52%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285 +L P + + + PVL +A + I + + L L+ + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAEHGKLDLRELLALLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Serratia proteamaculans 568] gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568] Length = 369 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 127/336 (37%), Positives = 179/336 (53%), Gaps = 26/336 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G+ V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L + P+RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRENLRQPLRIILDSQNRVTPQH 243 Query: 235 KIIKT------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++++ A L P + D V L F + DL ++ L R V Sbjct: 244 RVVQQPGQTWLARLQPDEQIWPQD--VEQLTFPAHGGGV------DLVVMMMQLAKRQVN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+ VE GA +A + + + LVD +ILY + ++G+ G Sbjct: 296 SIWVEAGAQLAGALLQAGLVDELILYIAPKLLGDNG 331 >gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] Length = 302 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 108/292 (36%), Positives = 163/292 (55%), Gaps = 8/292 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RG Sbjct: 7 YMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 67 ATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E E K + + KR +T+K V+ D I + S IT ++ +VH +R Sbjct: 127 VCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRN 186 Query: 189 QSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ AILVG TV D+P LT R+ NG +P+RIILD ++ +++ ++ I Sbjct: 187 ENAAILVGANTVQKDNPSLTTRIPNG---RNPIRIILDSTLRIPMEANVVTDGEAPTWIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296 T N +A + + +L ++L +L +GV+SLLVEGG Sbjct: 244 TTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGG 295 >gi|296283379|ref|ZP_06861377.1| riboflavin-specific deaminase/reductase [Citromicrobium bathyomarinum JL354] Length = 323 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/320 (40%), Positives = 166/320 (51%), Gaps = 46/320 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR++SAA R S ++ NP+V C+IV+ G V+GRG T GG PHAE ALE AG+ Sbjct: 8 DARWLSAAARLSLRGRPASAPNPAVGCVIVQAGRVVGRGWTQAGGRPHAEAMALEMAGDA 67 Query: 67 ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GA Y TLEPC+H R P C +IE RVV+ DPD R +G+G++ L GI Sbjct: 68 ATGADVYATLEPCAHQSPRGPACTDRLIEARPARVVIGQIDPDPRTAGQGIERLHAAGID 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + L YLTR R H+TLK+A+S D I +A S ITG ++ VH Sbjct: 128 AVLLDCPHSAASLAGYLTRAALGRPHVTLKLAMSLDGCIALADGTSQWITGEAARAHVHS 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLA 243 RA +DAILVG GT AD P L R+ GL++ SP R + L S+ I+ A + A Sbjct: 188 RRALADAILVGGGTWRADSPRLDVRVPGLEDRSPARWV--------LTSQPIEGAQTIAA 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 PV I T I Y L VEGGA A SF+ Sbjct: 240 PVDIAT---------------IPAQY--------------------LYVEGGAQTAASFL 264 Query: 304 NSRLVDSIILYRSQIVIGEG 323 + LVD + +YR+ I+IG+G Sbjct: 265 EADLVDRLEIYRAPILIGDG 284 >gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] Length = 370 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSALDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 P +I + A K +I D + DL +L L R + L VE Sbjct: 242 DDHREPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673] gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673] Length = 370 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 27/365 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H G+ PPC + I+ GI RVVV DP+ V G+G++ L + G+ + Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGVSV 123 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ E ++F H T + + +K A++ D I S ITG +++ Sbjct: 124 TEDILREECAKLNEVFFHYIRT----EHPFVVMKYAMTMDGKIAAVTGESKWITGEAARH 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTA 240 V LR + AI+ G+GTV++DDP LTCR G++ +P+RII D + ++++ TA Sbjct: 180 HVQKLRHRYTAIMAGVGTVISDDPLLTCR--GVRGGKNPVRIICDTRLRTPPAARVVATA 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 AP +I T DDP + +++ +++ + DL++L+ L +G+ S+L+EGG Sbjct: 238 GQAPTVIATCCDDPERHMVYQEAGCSVLTVKEKNGHVDLRELMRKLGKQGIDSILLEGGG 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348 + + + S +V Y + ++G +P+E +G + KN +R G Sbjct: 298 TLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIR---LGE 354 Query: 349 DVCLE 353 D +E Sbjct: 355 DFLIE 359 >gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815] gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815] Length = 373 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 188/365 (51%), Gaps = 25/365 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T NP V C++VK+G VIG G T G HAE+QAL++A Sbjct: 3 SQTDFVHMERALALAWRGLYTTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + +GATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ RVSGRGL L Sbjct: 63 RKRGHDLQGATAYVTLEPCSHFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E++ + +++R R + +K+A S D G+ S IT + Sbjct: 123 EAGIEVRCGLLENDARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P +T R P R+++D ++ D++I+ Sbjct: 183 RNDGHAWRARASAILTGIGTVKEDNPRMTVRAVDTPRQ-PHRVLIDSQLEVPPDAQILAG 241 Query: 240 ALLAPVIIVTENDDPVL---ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP ++ P+L A + I+ DL ++L L R V L V Sbjct: 242 ---APTLVFCSTLSPLLTERAAVLHDRGAEIVPLANENGKVDLPRMLEELGKREVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDY 345 E G + S + VD +++Y + ++G + P L + + F V D Sbjct: 299 EAGYKLNGSLLREGCVDELLVYVAPSLLGNDSMSMFNLAAPGSL-DARTQLEFHAV--DR 355 Query: 346 FGSDV 350 GSDV Sbjct: 356 IGSDV 360 >gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1] gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1] Length = 368 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 174/331 (52%), Gaps = 22/331 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 3 DEVYMARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+ V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I+ E+ D V L N + DL L+ L R + S+ Sbjct: 243 RIVHQPGETWFARTDEDSRQWPDGVSTLNIPAHNGQL------DLVLLMMQLGRRQINSV 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G +A + + + +VD +I+Y + ++G Sbjct: 297 WVEAGPRLAGALLQAGVVDELIVYVAPKLLG 327 >gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium yellowstonense SS-5] gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium yellowstonense SS-5] Length = 371 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 117/325 (36%), Positives = 168/325 (51%), Gaps = 10/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+++A G + Sbjct: 10 YMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKGHD 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +G+T +VTLEPC HYGR+PPC IIE GI VV+ D + V G+G+ L GI + Sbjct: 70 LKGSTMFVTLEPCCHYGRTPPCTSAIIEEGISEVVIGALDQNPIVKGQGVNILKSHGIKV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E + + T EKR + LK+A S D I S IT S+ H Sbjct: 130 ITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKIGDSKWITSEKSRQFAHQ 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++ AILVG T L D+P LT R + E P R+++D K+ I V Sbjct: 190 LRKEASAILVGTNTALKDNPALTVR-HVETEKQPARVLIDKKLKVPPTYNIYNNEAKTIV 248 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAH 300 I + L K+N+ I++ D + +K +L L R + LLVEGG V Sbjct: 249 ITSKLANQENLKRLSEKENVEIVFLDLDENEKFKIDDILNTLYEREIVHLLVEGGRGVIT 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325 I R D I ++ + ++IG GI Sbjct: 309 DLIKERKFDKISIFTAPLLIGNDGI 333 >gi|229524273|ref|ZP_04413678.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae bv. albensis VL426] gi|229337854|gb|EEO02871.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae bv. albensis VL426] Length = 367 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 178/339 (52%), Gaps = 27/339 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAAELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-- 285 +L P + + + PVL +A + I + + + L L+ + Sbjct: 241 HQLH------------PELALYQTPSPVLRVASENAELCISAENGKLDLRELLALLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V + VE G+ +A S I +LVD IILY + ++G G Sbjct: 289 NVNQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDG 327 >gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab] gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab] Length = 371 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 176/325 (54%), Gaps = 3/325 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M L +R S NP VAC+IV+ V+G GV G PHAEV AL++AG Sbjct: 6 DRQWMERCLSLARSTPQRPSPNPRVACVIVRGDQVVGEGVHLGAGQPHAEVLALQQAGSL 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L + G+ V Sbjct: 66 AKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGVEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + V+KR LK A++ D A S I+ +++ VH Sbjct: 126 TVGVLEQECQELNEGFAFAIVQKRCFGLLKYAMTLDGKSAAATGHSRWISNPLAREWVHR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DA++VG GTV D+P LTCRL P+R++L L + + + A AP Sbjct: 186 QRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGSQPLRVVLSRSLNLPPLAHLWR-AEEAPT 244 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +++TE + L + K+ + +++ D + +L RG S L E G +A + + Sbjct: 245 LVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQVLFERGCLSALWECGGTLAWAALK 304 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL 329 + + + + ++G P+P+ Sbjct: 305 DGAIQKVAAFIAPKILGGADAPTPV 329 >gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM 180] gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM 180] Length = 381 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 12/310 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 T NP V C++V+DG V+G G G PHAE AL +AGE AR AT YVTLEPCSH+GR Sbjct: 32 TDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGERARDATVYVTLEPCSHHGR 91 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143 +PPCA+ +I G+ RVV + DP+ RV+GRG++ L Q GI VD +ESE + ++ Sbjct: 92 TPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGISVDVGCLESEARALNPGFVK 151 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R + R ++ K+A S D +A S IT ++ V RA S AI+ G+GTVL D Sbjct: 152 RYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQRWRAGSSAIVTGLGTVLGD 211 Query: 204 DPELTCRLNGLQ---------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD- 253 DP L RL + P R+++D H++ ++++ ++ + D Sbjct: 212 DPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTARLLGLPGRTLIVGIGPRDTA 271 Query: 254 PVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A + I + R DL L+ L R V +L+E G+ ++ + + + LVD I+ Sbjct: 272 AAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVLLEAGSTLSGAAVRAGLVDEIL 331 Query: 313 LYRSQIVIGE 322 LY++ ++G+ Sbjct: 332 LYQAPCLMGQ 341 >gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206] gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3] gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206] Length = 367 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82] Length = 367 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LR+QS AIL TVLADDP LT R + L E + P+RI++D +++ Sbjct: 183 LRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 243 RIVQQP--GETWFARTQEDSREWPETERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|255038066|ref|YP_003088687.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM 18053] gi|254950822|gb|ACT95522.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM 18053] Length = 354 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/336 (37%), Positives = 183/336 (54%), Gaps = 20/336 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGE 65 D ++M AL+ + + G S NP V C+IV DG +IG G AYGG PHAEV+A+E+ Sbjct: 4 DNQWMERALQLAGYGRGAVSPNPMVGCVIVHDGRIIGEGWHRAYGG-PHAEVRAIEDT-- 60 Query: 66 EARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +ARG ATAYVTLEPCSH G++PPCA ++ ++RVV+C +DP+ VSGRG++ Sbjct: 61 DARGNSHLLPQATAYVTLEPCSHTGKTPPCADLLVSRRLKRVVICNNDPNPLVSGRGIRR 120 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + GI V+ + E+ G + T +R ++ LK A + D +G + I+G Sbjct: 121 LREAGIEVECGVAEAAGTELNKRFFTAMTLQRPYVILKWAETADGFLGYQAGSPLQISGT 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S +VH R + DAI+VG T L D+P L R +P+RI+ D H +L + Sbjct: 181 LSNMRVHQWRTEEDAIMVGYKTALMDNPRLNVR--HWAGRNPVRIVTDRHLQLPPQLHLF 238 Query: 238 KTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---RGVTSLLVE 293 + V+ E D P + + + + ++++L IL G R V SLLVE Sbjct: 239 DQSQSTVVVSYDLETDIPSDPERYLAPTTAYMKIEPK-VEEILQILQGLHRRKVQSLLVE 297 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSP 328 GGAAV ++F L D I + I IG G P+P Sbjct: 298 GGAAVINAFFECGLWDEIRRCQGGITIGNGVAAPAP 333 >gi|153209016|ref|ZP_01947210.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat Q177'] gi|165920291|ref|ZP_02219563.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334] gi|212219122|ref|YP_002305909.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii CbuK_Q154] gi|120575553|gb|EAX32177.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat Q177'] gi|165916847|gb|EDR35451.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334] gi|212013384|gb|ACJ20764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii CbuK_Q154] Length = 354 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +I+ N+ D +KNI I R DL ++L ++ G+ L +E G Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ L++ ++Y + ++G +P+ Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327 >gi|330815405|ref|YP_004359110.1| Putative deaminase [Burkholderia gladioli BSR3] gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3] Length = 384 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 184/336 (54%), Gaps = 31/336 (9%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + D +M+ AL + + T+ NP V C+IVK GI+IG G T G HAEV+A+++A Sbjct: 18 ALDRAWMARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDAR 77 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG L + Sbjct: 78 ARGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137 Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V ++E E + +++R R + +K+A S D + G S ITG ++ Sbjct: 138 AGIEVRGGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAAR 197 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239 H RA++ +IL GIGTV DDP+L R G+ P R+++D L +++++ Sbjct: 198 ADGHAWRARACSILTGIGTVRGDDPQLNVR--GIDTPRQPRRVLIDGRLDLPHEARLMAG 255 Query: 240 ALLAPVIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 A P++ E D V++LA + ++ DL +L L R Sbjct: 256 A--PPLVFCGELDAPARARADALRARGAEVVSLANARGSV--------DLAAVLAELGCR 305 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G L VE G ++ + + + LVD +++Y + ++G Sbjct: 306 GDNELHVEAGRTLSGALLRAGLVDELLVYVAPSLLG 341 >gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2] gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2] Length = 365 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 114/316 (36%), Positives = 172/316 (54%), Gaps = 4/316 (1%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M A+ + G TS NP V ++VK+G ++G G G PHAEV A+ AGE+A+ Sbjct: 5 EYMELAISLAAATKGQTSPNPQVGAVVVKNGEILGMGAHLKAGTPHAEVHAIAAAGEKAK 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA YVTLEPCSH+GR+PPCA II GI RV + DP+ VSG+G++ + GI +V Sbjct: 65 GADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +++ E + K ++T+K A S D S IT S+ VH LR Sbjct: 125 GLLKEEADALNEPFFHFIKTKTPYVTIKAASSFDGKTAAKTGDSKWITSPESRQDVHRLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAIL G+ T++ D+P LT RL + +P+R++LD + ++ D+ +I+ + +I Sbjct: 185 HEHDAILTGVNTIIHDNPLLTARLPQGGK-NPIRVVLDTNLRIPADANVIRDQSVKTIIF 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 D A +K N + + +K++L L R + +L VEGG+ + SFINS Sbjct: 244 TGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGERNIMTLFVEGGSEIHASFINS 303 Query: 306 RLVDSIILYRSQIVIG 321 IILY + +IG Sbjct: 304 GFFQQIILYMAPKIIG 319 >gi|299138351|ref|ZP_07031530.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8] gi|298599597|gb|EFI55756.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8] Length = 387 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/343 (35%), Positives = 182/343 (53%), Gaps = 17/343 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D R + AL ++ VGL S NP+V C++V+DG+V+G G Y HAE+ AL Sbjct: 1 MSLLPHDERHLQRALDLAQEAVGLASPNPTVGCVLVRDGVVLGEGAHHYDERDHAEIAAL 60 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 ++A G +GATAYVTLEPCSH GR+ PCA +I GI R VV DP+ VSG GL Sbjct: 61 KQAASLGHTPQGATAYVTLEPCSHQGRTGPCADALIAAGIARCVVATVDPNPLVSGGGLA 120 Query: 118 WLSQKGIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---C 169 L GI V + + A+ +R +TLK AVS D + A Sbjct: 121 KLQAAGIEVVVADPASALAQRTRRLNDAFAHWIQHRRPFVTLKAAVSVDGKLAPAPSVRT 180 Query: 170 GSVP--ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227 + P +TG ++ VH LR + DAIL GIGTVLADDP LT R + S +R++LD Sbjct: 181 ANQPHWLTGEAARADVHRLRHEVDAILTGIGTVLADDPSLTDRSGLPRRRSLLRVVLDSD 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283 + L+S+++++A +++ + A + ++ +L+ L L Sbjct: 241 LRTPLNSQLVRSAGSDLLLLCSRTAPADREAALSDCGVEVLRLSGSGGHLNLRAALDTLA 300 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 R + S+L+EGG+++ S ++ LVD + LY ++ +G IP Sbjct: 301 QRNIISVLIEGGSSLNGSLLHEGLVDKLTLYYAECELGLDAIP 343 >gi|320120555|gb|EFE28957.2| riboflavin biosynthesis protein RibD [Filifactor alocis ATCC 35896] Length = 364 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 182/369 (49%), Gaps = 31/369 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAG 64 F +M A+ ++ G S NP V +IVKD I+IG G T YGG HAE +AL+ Sbjct: 3 FHETYMKTAIELAKKGEGYVSPNPLVGAVIVKDDIIIGSGYHTKYGGL-HAEREALKNCR 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +GA+ YVTLEPCSHYG+ PPCA IIE GI V + DP+ V+G+G+Q L I Sbjct: 62 TSPKGASMYVTLEPCSHYGKQPPCALAIIESGIDTVYIGSSDPNPEVNGKGIQVLRDANI 121 Query: 125 -IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 +V +++ E F H T R ++TLK A++ D I S ITG + Sbjct: 122 KVVTGLLKEECDSLNTFFFHYIATN----RPYVTLKFAMTIDGKIASHSGKSQWITGESA 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + QVH R + AI+VG+GTV D+P L CR SP+RII D + ++SKI++T Sbjct: 178 RAQVHRDRKRYQAIMVGVGTVFQDNPVLNCRTKE-NPVSPIRIICDTKLRTPMNSKIVQT 236 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 + P + T D + +I+ + DL L+ L G+ SL VEGG Sbjct: 237 SKEIPTYLATCCTDKSKHSPYEMYGCSILVTKQQNGHIDLNDLMQQLGKIGIDSLFVEGG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIG---------EGGIPSPLEE-GYLEKNFMCVRRDY 345 + S + LV+ I Y V+G G +P + + N MC Sbjct: 297 GTLNWSLLQENLVNHIQCYIGNKVLGGQSAKTAILGTGFDTPNDSPAFKLSNIMC----- 351 Query: 346 FGSDVCLEY 354 F D+ LEY Sbjct: 352 FDEDILLEY 360 >gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium 1_1_47] gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium 1_1_47] Length = 363 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 114/329 (34%), Positives = 176/329 (53%), Gaps = 12/329 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D +M AL ++ NP+V C+IVKD +IG G T G HAEV AL + Sbjct: 1 MSFSDCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRD 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A GE GAT YVTLEPCSHYGR+PPCA + + RVV + DP+ V+G+GL+ L Sbjct: 61 AASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKML 120 Query: 120 SQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + G+ V+ +E+ E + +L RQ E + K+A+S D +A S IT Sbjct: 121 EEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEE 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H R S A+L G+GTVLAD+P++T R G+ P+++++D + L+ D KI + Sbjct: 181 ARADGHFWRGISGAVLTGLGTVLADNPQMTARFEGVTRQ-PLKVVVDSNLSLNPDLKIFQ 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 ++V D V A F + + +I + DL+ L+ L R + + VE Sbjct: 240 G---GKTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEA 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GA + + L+D ++Y + + +G+G Sbjct: 297 GARLNGALAMEGLIDEYLIYVAPVFLGDG 325 >gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1] gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1] Length = 367 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D ++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEH 242 Query: 235 KIIK----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ T +E + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718] gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718] Length = 367 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 190/368 (51%), Gaps = 28/368 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+G Sbjct: 6 YMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 ATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 66 ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHG 125 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M SE + +L R +I LK+ S D MA S IT ++ V LRA Sbjct: 126 LMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRA 185 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKII 237 QS AIL TVLADDP LT R + L E + P+RI++D +++ + I+ Sbjct: 186 QSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHHIV 245 Query: 238 KTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 246 QQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGS 348 G +A + + + LVD +I+Y + ++G +P LE+ F + G Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL +G Sbjct: 359 DVCLHLVG 366 >gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174] gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 8_1_57FAA] gi|149832246|gb|EDM87331.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174] gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 8_1_57FAA] Length = 395 Score = 186 bits (473), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 21/357 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 143 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 198 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R Q I+ GIGTVLADDP L R+ G + SP+RI+ D ++ S+I+K+A Sbjct: 199 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 256 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 I+ +N + + + IYC + DLKKL+ L RG+ S+L+EG Sbjct: 257 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 315 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 G + S + + +V + + + + G +P+E +E V Y +D+C Sbjct: 316 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 370 >gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280] gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280] Length = 367 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTHEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|326404513|ref|YP_004284595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium multivorum AIU301] gi|325051375|dbj|BAJ81713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium multivorum AIU301] Length = 363 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 140/358 (39%), Positives = 198/358 (55%), Gaps = 10/358 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+ Sbjct: 3 DLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGDA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G+ + Sbjct: 63 ARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ + +E + E R +TLK+A S D I S ITG ++ H Sbjct: 123 VEGIGGAEAAEINAGFCKCIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P+ Sbjct: 183 LRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHPL 242 Query: 246 IIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 IV + DP A + DL L + G+T +L EGG +A Sbjct: 243 WIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAAVGEAGLTRVLAEGGGTLAA 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + I + LVD + + + +VIG+ GI + +EE F + G D+ Y Sbjct: 303 ALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRY 360 >gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chromohalobacter salexigens DSM 3043] gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chromohalobacter salexigens DSM 3043] Length = 380 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 112/329 (34%), Positives = 181/329 (55%), Gaps = 13/329 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ +R T NP V C++V G ++G G AY G PHAEV AL EAG+ A GA Sbjct: 10 MARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREAGDAAAGA 69 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPCSH+GR+PPCAQ +I+ G+RRVVV + DP+ +V+GRG+ L + GI VD + Sbjct: 70 TVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVDVGL 129 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + ++ + ++ R + + LK+A+S D MA S ITG ++ +V LRA+ Sbjct: 130 LATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRLRAR 189 Query: 190 SDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTAL 241 + A++ G+ +V+ D+ LT R + L P+R+++D +L L + ++ Sbjct: 190 ASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLREPG 249 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILV-GRGVTSLLVEGGAA 297 V T ++ AL+ + ++ D DL+ LL L +L+E GA Sbjct: 250 RTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLETGAT 309 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +A + ++ +D + L+ + ++G P Sbjct: 310 LAGAMLDLEAIDEMHLFVAPTLLGGEARP 338 >gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113] gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113] Length = 371 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 114/331 (34%), Positives = 182/331 (54%), Gaps = 14/331 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG Sbjct: 3 DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G+T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ V Sbjct: 63 AQGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + ++ R V+ R + K+A+S D +A S IT ++ V Sbjct: 123 EHGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-------PMRIILDPHFKLSLDSKIIK 238 RA+S AIL GIGTVL DDP L R L + + P+R+ILD +S+ ++++ Sbjct: 183 WRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLL- 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 +L PV+IV + A + R + + +I DL L+ L R + L VE Sbjct: 242 -SLPGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVEC 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 GA +A S + + L+D ++LY + ++GE + Sbjct: 301 GARLAGSLLQAGLMDELVLYIAPKLMGEAAL 331 >gi|146276894|ref|YP_001167053.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC 17025] gi|145555135|gb|ABP69748.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodobacter sphaeroides ATCC 17025] Length = 356 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 130/320 (40%), Positives = 183/320 (57%), Gaps = 7/320 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL EAG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAEAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRM 129 TAYVTLEPC+H+GR+PPCA+ + G+ RVV DPD RV+GRG L GI V + + Sbjct: 61 TAYVTLEPCAHHGRTPPCAEALAAAGVARVVTATGDPDPRVAGRGHALLHAAGIAVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + +L R +TLK+A S D I A S ITG ++ VH +R + Sbjct: 121 LEAEARAANAGFLKRVTLGLPFVTLKLAASVDGRIATASGESRWITGAHARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT LADDP+L+ R G H P+RI++D + S DS++ +TA PV + Sbjct: 181 HDAVMVGVGTALADDPDLSVRDLG-AAHQPVRIVVDSLLRHSCDSRLGRTARHVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINIIY-C----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D P A A + ++ C D D ++ L G+T + EGGA + + + Sbjct: 240 GPDAPEAARAGWRAAGALLLECEAGPDGLDPAAVMRRLASEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGG 324 + L D ++ + + +IGE G Sbjct: 300 AGLCDELVSFTAGKLIGEEG 319 >gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 EDL933] gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. Sakai] gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4113] gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4401] gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4501] gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4486] gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4196] gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4076] gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC869] gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC508] gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. EC4024] gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4206] gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4045] gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4042] gi|209395713|ref|YP_002269058.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4115] gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. TW14588] gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. TW14359] gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. FRIK2000] gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. FRIK966] gi|291281320|ref|YP_003498138.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin biosynthesis protein RibD [Escherichia coli O55:H7 str. CB9615] gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli O157:H7 str. EDL933] gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli O157:H7 str. Sakai] gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4196] gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4113] gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4076] gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4401] gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4486] gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4501] gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC869] gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC508] gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4206] gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4045] gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4042] gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4115] gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. TW14588] gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. TW14359] gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin biosynthesis protein RibD [Escherichia coli O55:H7 str. CB9615] gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli O157:H7 str. EC1212] gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. G5101] gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H- str. 493-89] gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H- str. H 2687] gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. 1044] gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli O157:H7 str. 1125] Length = 367 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L Q H P+RI++D +++ + Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 HIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus pumilus SAFR-032] gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus pumilus SAFR-032] Length = 361 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 195/359 (54%), Gaps = 10/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL+ A E+ Sbjct: 4 DVFYMELAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALQMAREK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GA YVTLEPCSHYG++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI V Sbjct: 64 AKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGIEV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + + L+ ++ ++ LK A+S D I A S ITG ++ +V Sbjct: 124 DEGICKQEADRLNVPFFHFIQSDFPYVILKSAISLDGKIATADLESKWITGTEARKEVQQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++DA++ G+ T++ DD L + + + + P+R+ILD ++ L +K + + Sbjct: 184 LRQEADAVITGVETIIQDDAGLIVKDSNMTQ--PIRVILDSTLRIPLHAKCLTDRRAETI 241 Query: 246 IIVTE-NDDPVLALAFRK-KNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I ++ D L K + I + R D+ +L +L R V S+LVE G +V+ SF Sbjct: 242 ICISRMYDQKKYELLIEKGHQVYITSGEERTDIHDVLRMLKERSVMSVLVEAGGSVSASF 301 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + + LV+ ++Y + ++IG P+ E ++K +R +DV +GK+ + Sbjct: 302 LEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKLKEAIRP----ADVEYSMVGKDFKM 356 >gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CMR15] Length = 370 Score = 186 bits (472), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 QAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RADGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 P +I + A + +I D + DL +L L R + L VE Sbjct: 242 DGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlorobium phaeobacteroides DSM 266] gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlorobium phaeobacteroides DSM 266] Length = 366 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 123/355 (34%), Positives = 188/355 (52%), Gaps = 13/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEA 67 +M+ + G+ S NP V +IV +G ++G G G PHAEV A+ G E Sbjct: 9 YMNRCFELALQGSGMVSPNPMVGSVIVHNGEIVGEGYHERFGGPHAEVHAIASVGNAEVL 68 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 + +T YV LEPCSH+G++PPCA I+ I RVV+ DP +V+G+G++ L+ G+ + Sbjct: 69 QNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAAGVQVT 128 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + ++ E A++ +TLK+A + D I AG S ITG S+ QVH L Sbjct: 129 EGVLMPEALKLNEAFIKSCTVGLPFVTLKLAQTLDGKIATAGGASRWITGEESRTQVHRL 188 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R DA++VG TV ADD ELT R +P+R++LD L D++I T V Sbjct: 189 RCNCDAVVVGEATVQADDSELTVR--HCAGRNPLRVLLDRRLSLFADARIFSTEAATLVF 246 Query: 247 IVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + V A RK+ + +I D DLK++L L RG+ SLLVEGG+ ++ SF Sbjct: 247 TTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQELHRRGIISLLVEGGSRLSASF 306 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRD---YFGSDVCLE 353 + + LVD ++++ + + G G+ + G L + +R +FG D+ LE Sbjct: 307 LGAALVDKLLVFIAPRLFGGDGLSAFAPLGVELPDQAVQLRFQPPVFFGRDLLLE 361 >gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Dixon] gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella fastidiosa M12] gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Dixon] gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella fastidiosa M12] Length = 364 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 181/332 (54%), Gaps = 17/332 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D M AL + T NP V C+IV DG V+G G G PHAEV AL A Sbjct: 5 SADDHCHMERALCLAERGAYTTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFALRAA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L G Sbjct: 65 GDCARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 125 VTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + SL ++ Sbjct: 185 VQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLR-SLSCVKVRDG 243 Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 AP + + PVL ++++ R DL +L +L RG+ + VE Sbjct: 244 -TAPTLYLHGFGVTSPVL------QHVDFSEVQQRDAGLDLGAVLRLLGERGINEVQVEA 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA + + +++ LVD +++Y + +++G+ P Sbjct: 297 GATLCGALLHAGLVDELLIYIAPLLLGDTARP 328 >gi|284051945|ref|ZP_06382155.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca] gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis NIES-39] Length = 387 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 176/328 (53%), Gaps = 3/328 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL Sbjct: 9 VSEFDRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQKIIGEGYHPGPGQPHAEIFALRS 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L + Sbjct: 69 AGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCEA 128 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V +E + L+ A++ R + K++ K A++ D I S +TG I++ Sbjct: 129 GIEVIVGVEESACLKLNEAFVHRIIYKQTFGIFKYAMTLDGKIATDIGDSAWVTGAIARQ 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR DA++VG TV D+P LT +G E +P+R+++ L +++ T+ Sbjct: 189 EVHRLRVACDAVIVGGNTVRRDNPHLTT--HGQGEPNPLRVVMSRSLDLPSSARLWDTSE 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A ++ P RK+ + ++ K+++ R S+L E G +A Sbjct: 247 AATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYERQFLSVLWECGGRLASE 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 I V I+ + + +IG PSP+ Sbjct: 307 AITQGCVHKILAFIAPKIIGGQAAPSPV 334 >gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Ruminococcus obeum A2-162] Length = 375 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 190/357 (53%), Gaps = 21/357 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 123 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R Q I+ GIGTVLADDP L R+ G + SP+RI+ D ++ S+I+K+A Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 236 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 I+ +N + + + IYC + DLKKL+ L RG+ S+L+EG Sbjct: 237 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 295 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 G + S + + +V + + + + G +P+E +E V Y +D+C Sbjct: 296 GGTLNDSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 350 >gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya majuscula 3L] gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya majuscula 3L] Length = 372 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 184/334 (55%), Gaps = 8/334 (2%) Query: 2 PVSSFDARFMSAAL-----RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 PV+SF ++ A+ + +R +G T+ NP V C+IV++G ++G G G PHAE Sbjct: 5 PVTSFPETPLAQAMIQRCIQLARQALGRTTPNPLVGCVIVRNGEIVGEGFHPAAGQPHAE 64 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V AL EAGE A+GAT YV LEPC+HYGR+PPC + +I+ G+ +VVV + DPD RVSG+G+ Sbjct: 65 VFALSEAGENAQGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGI 124 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L GI +V + ES + ++ R + +R LK A++ D I S IT Sbjct: 125 ERLRAAGIEVVVGVEESACRQLNEGFIHRILYQRPLGILKYAMTLDGKIAATSGHSKWIT 184 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G S++ VH LR+ DA++VG TV D+P LT + +P+R+I+ L D++ Sbjct: 185 GEKSRSWVHQLRSACDAVIVGGNTVRQDNPNLTS--HNPNAPNPLRVIMSRTLDLPRDAR 242 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + +T + ++ + L + + ++ + +++ L R ++ +L E G Sbjct: 243 VWQTDDVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQLSRVLWECG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 +A + I V I+ + + +IG G PSP+ Sbjct: 303 GILAANAIADGAVQKILAFIAPKIIGGHGGPSPV 336 >gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans OS217] gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] Length = 378 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 181/343 (52%), Gaps = 30/343 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL--- 60 S FD MS A++ + T NP V C+IVKDGI + G G HAEV AL Sbjct: 5 SKFDIEMMSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNALAAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + A A GATAYVTLEPCSH+GR+PPCAQ ++E G+ +VVV + D + +V+G+G+ L Sbjct: 65 KSANLSAIGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGIAMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V+ +++++ ++ R +T+K+A S D ++ S ITG S Sbjct: 125 EAGIAVEVGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWITGDAS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 +N V LRA+S A++ GI TVLADDP L R L + H P+RI+LD + Sbjct: 185 RNDVQKLRARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLDSKAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTI 281 L+ D ++ ++ +P+I+V+ P V L F N D R L Sbjct: 245 LTADKRLF--SITSPIILVSTQAYPETVIFPAHVQCLQFAPDN------DGRVPLISLFH 296 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +G+ +L+E GA +A + L D + LY++ ++G G Sbjct: 297 HLGKSYNQVLIEAGATLAGKVLELGLGDELYLYQAMKILGSHG 339 >gi|26522745|dbj|BAC44849.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium phosphoreum] Length = 388 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 181/335 (54%), Gaps = 20/335 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D + MS A+ ++ T+ NP+V C+IV DG ++G G G PHAEV AL + Sbjct: 1 MTHTDQQMMSRAIALAKHGCYTTAPNPNVGCVIVNDGDIVGEGYHYQAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + A+GAT YVTLEPCSHYGR+PPCA+ +I + RVV + DP+ V+GRG+ L Sbjct: 61 AQQRAQGATVYVTLEPCSHYGRTPPCAEALINAKVARVVCAMVDPNPAVAGRGIALLRAA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD ++ S+ + ++ + + ++ LK+A S D +A S ITG ++ Sbjct: 121 GIEVDVGVLASQAQALNPGFIKQMSHQMPYVELKLAASLDGRTALANGVSKWITGPKARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TV+ADDP L R + L+E P+R+I+D +L Sbjct: 181 DVQHFRAQAGAILSTSATVIADDPSLNVRWSELEESVQQAYPQSALRQPIRVIIDSQNRL 240 Query: 231 SLDSKIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 + + ++ +LA I TE D V + + DL L++ L G Sbjct: 241 TPEYQLFHLPGETILARTEIGTEAWPDSVQQWQIPTQTDS----HQLDLVVLMSRLANYG 296 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + VE GA +A + + +LVDS+ILY++ ++G Sbjct: 297 INHIWVEAGARLAGALLQQQLVDSLILYQAPKLMG 331 >gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans PsJN] gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans PsJN] Length = 383 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 25/365 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL ++ + T NP V C++VK+G VIG G T G HAE++AL++A Sbjct: 3 SQTDFVHMERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV D+P +T R P R+++D + D++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDNPRMTVRAVDTPRQ-PQRVLIDSQLDVPPDAQILAG 241 Query: 240 ALLAPVIIVTENDD---PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 A +I N D A A R + I+ DL +L +L R V L V Sbjct: 242 ---ASTLIFCGNLDGRHTDRAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDY 345 E G + S + VD +++Y + ++G + P L EG ++ NF V D Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETL-EGRVKLNFHAV--DR 355 Query: 346 FGSDV 350 G DV Sbjct: 356 IGEDV 360 >gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM 2489] gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM 2489] Length = 390 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 189/374 (50%), Gaps = 21/374 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66 FM A+ ++ G NP V +I KDG +I G G HAE AL+ A E+ Sbjct: 18 FMQRAIELAKRGGGKVHPNPLVGAVIEKDGKIIAEGFHHEYGNLHAERDALKNAAEKNAC 77 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGA YVTLEPC H G+ PPC Q II+ GI+ VV+ DP+ V+G+G+ L GI + Sbjct: 78 VRGANLYVTLEPCCHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGIKI 137 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R M++E + KR + +K A S D ++ S IT S+ VH Sbjct: 138 FRDFMKAECDSLNEIFFYYITAKRPFVIVKYAQSADGKTSLSSGESKWITNESSREYVHY 197 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + A++ GI TVL DDP LTCR+ G + + P+RI+LD K+ L+S ++KTA P+ Sbjct: 198 LRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVRIVLDTELKIPLESNLVKTANEVPL 257 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T +D + A +K +I + + D+ ++L L + S+LVE G ++ S Sbjct: 258 IIFTCSDSAKKS-ALEEKGAKVIQIEKKDSHIDILQVLKKLGEFSIDSVLVESGGSLNSS 316 Query: 302 FI-----NSRLVDSIILYRSQIVIG--EGGIPSPLEEGYLEKNFMCVRR-----DYFGSD 349 LV+ ++ + + ++G G + SP++ CV F D Sbjct: 317 LFFYGKEKKCLVNKVLCFVAPKILGGINGTVHSPVQGIECSSLLSCVNLALKNVKTFSGD 376 Query: 350 VCLEYIGKNLCLQE 363 + LEY K CL+E Sbjct: 377 LLLEYDFKEPCLEE 390 >gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum WAL-14163] gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum WAL-14163] Length = 370 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 121/365 (33%), Positives = 194/365 (53%), Gaps = 27/365 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H G+ PPC + I++ I RVVV DP+ V G+G++ L + G+ + Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGVSV 123 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ E ++F H T + + +K A++ D I S ITG +++ Sbjct: 124 TEDILREECAKLNEVFFHYIRT----EHPFVVMKYAMTMDGKIAAVTGESKWITGEAARH 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTA 240 V LR + AI+ G+GTV++DDP LTCR G++ +P+RII D + ++++ TA Sbjct: 180 HVQKLRHRYTAIMAGVGTVISDDPLLTCR--GVRGGKNPVRIICDTRLRTPPAARVVATA 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 AP +I T DDP + ++K +++ + DL++L+ L +G+ S+L+EGG Sbjct: 238 GQAPTVIATCCDDPERHMVYQKAGCSVLTVREKNGHVDLRELMRKLGKQGIDSILLEGGG 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE--------EGYLEKNFMCVRRDYFGS 348 + + + S +V Y + ++G +P+E +G + KN +R G Sbjct: 298 TLNWAALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIR---LGE 354 Query: 349 DVCLE 353 D +E Sbjct: 355 DFLIE 359 >gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7] gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7] Length = 383 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 174/328 (53%), Gaps = 12/328 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M+ A+ ++ T+ NP+V C++VKD +IG G G HAEV AL A Sbjct: 8 TEHDKLYMARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNALAVA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSHYGR+PPCA+ + GI++V+ + D + +V+G+GL+ LS G Sbjct: 68 GEKAQGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDAG 127 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E E + + R + ++T K+A S D + S ITG ++ Sbjct: 128 IEVAHGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARKD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--------GLQEHSPMRIILDPHFKLSLDS 234 V L RAQS AIL G TVL D+ +L R + L P+R+I+D +L+ D Sbjct: 188 VQLYRAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPDL 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 + K A PVII T D + K+I + + DL +L L ++ +E Sbjct: 248 ALFKIA--HPVIIFTTKVDNSMQWPHFVKHIAVREQQGKVDLTDVLQTLAKHQFNNIWLE 305 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A L+D + Y + ++G Sbjct: 306 AGATLAGKMTELDLIDEYVFYIAPKLMG 333 >gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272] gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227] Length = 367 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 191/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGESWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110] gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110] Length = 364 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 117/334 (35%), Positives = 182/334 (54%), Gaps = 5/334 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D + M L +R +G TS NP V +IVKDG +IG G G PHAEV AL EAG Sbjct: 6 NVDQQMMQRCLTLARQGLGYTSPNPLVGAVIVKDGKIIGEGFHPKAGEPHAEVFALREAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L + GI Sbjct: 66 EKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGI 125 Query: 125 IVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E + L+ A+ R + + LK A++ D I + S +TG S+ V Sbjct: 126 EVTVGVEEAACLRLNEAFCHRILNNQPFGILKYAMTLDGKISSSTGHSAWVTGTKSRQLV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RA DA++VG TV D+P LT ++ + +P+R+++ + L ++ + +A Sbjct: 186 HQIRAGCDAVIVGGNTVRRDNPHLT--IHQVTGVNPLRVVMSRNLHLPEEANLWNVD-IA 242 Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I+ TE ++P L R K + +I +++ IL R + S+L E G + Sbjct: 243 PTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYERQLCSVLWECGGVLGAEA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 I R++ I+ + + +IG SP+ + L+K Sbjct: 303 ITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDK 336 >gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546] gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546] Length = 368 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 119/331 (35%), Positives = 176/331 (53%), Gaps = 24/331 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D + MS A+ ++ + T+ NP+V C+I +DG ++G G G PHAEV AL A Sbjct: 5 TSQDFKMMSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L G Sbjct: 65 GEKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRDAG 124 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ + + I L+ A++ R + LK+A S D +A S IT ++ Sbjct: 125 IEVEVGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKARQD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKLS 231 V RAQS AIL TV+ D+ L R + L Q H P+R+ILD L+ Sbjct: 185 VQKYRAQSGAILSTSKTVIDDNASLNVRWDDLPQSVQSHYPEQQLRQPVRVILDRQGLLT 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290 + K+ T +IV E D L L + DL+ L + + L Sbjct: 245 PELKLFNTE--GGRLIVAEQGDVELQLNTEHQ---------VDLRATFADLANKHNINHL 293 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE GA +A S I + LVD ++LY + ++G Sbjct: 294 WVEAGATLASSLIKADLVDELVLYLAPKIMG 324 >gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC 49989] gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC 49989] Length = 368 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 180/326 (55%), Gaps = 21/326 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--- 65 ++MS AL + +G TS NP V +IVK+G +IG+G G HAEV+A+++A Sbjct: 11 KYMSMALELAEKGLGTTSPNPMVGAVIVKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKDY 70 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----- 120 + GA YVTLEPCSH GR+P C+ +I+ I RV + + DP+ V+G G++ L Sbjct: 71 DIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALIK 130 Query: 121 -QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI+ +R + K+FL Y+T EK ++ K ++ D I S IT S Sbjct: 131 CEVGILEERCRQL-NKVFLK-YVT---EKMPYVIFKSGITLDGKIATGTGKSKWITSEES 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VHLLR++ AI+VGIGTVLADDP LT R G + P++II+D +L L++K++ Sbjct: 186 RKDVHLLRSRCSAIMVGIGTVLADDPRLTARFEGA--YDPVKIIVDSKLRLPLEAKVVGE 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++ EN K + II + DL+K + L + S+L+EGGA Sbjct: 244 DC---IVGCCENVSREKIEELTNKGVKIIKAGKNKVDLRKFMAELAKLEIDSVLLEGGAT 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 +A S +LVD I LY + ++ G G Sbjct: 301 LAASMFKEQLVDEIRLYMAPMIFGSG 326 >gi|313675594|ref|YP_004053590.1| riboflavin biosynthesis protein ribd [Marivirga tractuosa DSM 4126] gi|312942292|gb|ADR21482.1| riboflavin biosynthesis protein RibD [Marivirga tractuosa DSM 4126] Length = 359 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/328 (35%), Positives = 173/328 (52%), Gaps = 14/328 (4%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 +PV S D FM AL+ + + S NP V C+IV DG VIG G G PHAEV A Sbjct: 7 LPVMSKQDELFMQRALQLAGYGKATASPNPMVGCVIVLDGKVIGEGWHKKAGEPHAEVMA 66 Query: 60 LE--EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + E E + +TAYVTLEPC+HYG++PPCA+ ++E +++VV+ DP+ V+G+G+Q Sbjct: 67 IRSVENPELLKSSTAYVTLEPCAHYGKTPPCAELLVEKQLKKVVIGAVDPNPLVAGKGIQ 126 Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L + GI V+ ++E E A+ T +KR +I LK A + D I S I+ Sbjct: 127 ILKKAGIEVESAVLEQECLEVNKAFFTYMQKKRPYIILKWAQTSDGFIARENFDSKWISN 186 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 +S+ VH R ++DAIL+G T DDP+LT R +P+R+++D L D KI Sbjct: 187 PLSRQIVHKWRTETDAILIGKNTAKYDDPQLTAR--DWSGKNPIRLVIDHDLTLGNDLKI 244 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGG 295 I D + +K I I D L+ +L L + S+L+EGG Sbjct: 245 FDGE--QKTIFFHSQDQKI-----ERKGIAAIKLSKEDFLRDMLNYLHQEKIQSVLIEGG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323 A SFI++ L D ++ + + +G Sbjct: 298 AQTVQSFIDAGLWDEARIFTASVSFEKG 325 >gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 536] gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli NC101] gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536] gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli NC101] gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972] Length = 361 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1] gi|167710137|gb|EDS20716.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1] Length = 361 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 126/357 (35%), Positives = 187/357 (52%), Gaps = 20/357 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+ +GA Sbjct: 1 MRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI + + Sbjct: 61 EIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETETGI 120 Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E E IF H Y+ + + LK A++ D I A S ITG ++ VH Sbjct: 121 LEEECRQLNDIFFH-YIQNDI---PYTALKYAMTLDGKIATATGESKWITGEEARRHVHT 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA P Sbjct: 177 LRHQYAAIMAGIGTVLADDPMLNARIE--HGNDPIRVICDSNLRISEGSNIVKTAREIPT 234 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T + D +K I+ +D +K++L L + S+LVEGG + S Sbjct: 235 IIATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNES 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I + V + Y + + G +P+E +E+ F ++ G+D+ LE Sbjct: 295 LIKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 351 >gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str. Eklund 17B] gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str. Eklund 17B] Length = 378 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 177/325 (54%), Gaps = 9/325 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS + +M AL ++ +G + NP V +IVKD +IG G Y G HAEV A+ Sbjct: 13 VSLVNEEYMDLALELAKKGIGKVNPNPLVGAVIVKDNEIIGTGYHEYYGGAHAEVDAINN 72 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + G+T Y+TLEPC+HYG++PPC IIE I++VV+ + DP+ VSG+ ++ L + Sbjct: 73 TTKSLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKEN 132 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V +E E K +++ + LK A+S D I + S IT ++ Sbjct: 133 DIEVIVGVEEEKCKKLNESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSKEARI 192 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 HLLR + AI+VG+ T++ D+PELTCR+ NG +P+RI++D ++ L SK+IK Sbjct: 193 DGHLLRNKLSAIMVGVNTIIKDNPELTCRIENG---RNPIRIVVDSTLRIPLSSKVIKNY 249 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 +I T+ D + +N+N+I + DLK+L+ L + S+L+EGG Sbjct: 250 DGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMRYLGTLKIDSILIEGGG 309 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 + S + +VD + Y + ++G Sbjct: 310 TLNFSALEENIVDKVRFYIAPKILG 334 >gi|207728168|ref|YP_002256562.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum MolK2] gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum MolK2] Length = 370 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 P +I + A + +I D + DL +L L R + L VE Sbjct: 242 DDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65] gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65] Length = 370 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 123/333 (36%), Positives = 180/333 (54%), Gaps = 24/333 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A++ ++ + T NP V C++VK+G +IG G G HAEV AL +AG A+G Sbjct: 7 FMARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNALAQAGSAAQG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSH+GR+PPC+ +I+ GIR +V + DP+ VSGRG + + GI I+ Sbjct: 67 ATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMRAAGIEIISG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ESE K ++ R ++ +KIA S D MA S ITG ++ V LRA Sbjct: 127 VLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNARADVQRLRA 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHFKLSLDSKII 237 +S AI+ GI ++LADD LT R + L E P+R+ILD H ++ D K++ Sbjct: 187 RSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHGRIRPDHKVV 246 Query: 238 KTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + V + P LAL + +N L++LL L R +LVE Sbjct: 247 NQSGQTLVCVRHGVQLPNFVESLALNHGESGLN--------LRELLKALADRQCNEVLVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 G+ +A FI LVD ++ Y + ++G P Sbjct: 299 TGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARP 331 >gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Alkalilimnicola ehrlichii MLHE-1] gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 369 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 123/336 (36%), Positives = 178/336 (52%), Gaps = 22/336 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D FM ALR +R NP+V C++V+DG+++G G G PHAE AL A Sbjct: 5 SPADNLFMGRALRLARRPQQPPHPNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMALHRA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSH+GR+PPC++ ++ G+ RVV + DP+ +V+GRGL+ L G Sbjct: 65 GEQASGATAYVTLEPCSHHGRTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRLRAAG 124 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V + +E L+ T+++ R + LK A S D MA S IT ++ Sbjct: 125 LEVATGLMAEQAAALNPGFTQRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK--- 238 VH RA+SDA+L GIGTVLADDP L R G++ P R +LD + D+ +++ Sbjct: 185 VHRWRARSDAMLTGIGTVLADDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLLRGEG 244 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYC------DCR-DLKKLLTILVGRGVTSL 290 T P + + R+ +C D R DL L L G+G + Sbjct: 245 ATLFHGPDVAAGQ---------IRRLTDAGAHCVALPLADGRLDLGAALDWLGGQGCNEV 295 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 LVE G + + + LVD +LY + ++G+ P Sbjct: 296 LVEAGPTLGGALSRAGLVDEWLLYLAPHLMGDAARP 331 >gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617] Length = 367 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 179/330 (54%), Gaps = 14/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEY 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I A + + D + I +Y + DL LL +L + + S+ VE Sbjct: 243 RLI--AQPGETWLARSSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA A + + + +VD +I+Y + ++G+ G Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAG 330 >gi|154491828|ref|ZP_02031454.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC 43184] gi|154088069|gb|EDN87114.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC 43184] Length = 395 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 121/337 (35%), Positives = 184/337 (54%), Gaps = 20/337 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +E Sbjct: 52 EEKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDE 111 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + GI Sbjct: 112 ALLRDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGTLDPFPEVSGRGVRMLREAGI 171 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179 +V ++E E + A++T Q+ KR ++ LK A S D I + A SV ++ + Sbjct: 172 EVVTGVLEEEARALNPAFMTFQIRKRPYVYLKWAQSADGFIDIRREDASVPSVLLSSAET 231 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +VH LR++ AI+VG T L D+P LT R SP+R++LD KL + S ++ Sbjct: 232 LRRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGRSPVRVVLDRTLKLPVGSHLLDG 289 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 A+ V E + + N+ + D L ++L L G+ + SL+VEGGA Sbjct: 290 AVPTLVFTAVEVES--------RPNVEYVQIDFGQEVLSQVLQYLYGQNLNSLMVEGGAE 341 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + SF+++ L D + + +V+G G+ +P G L Sbjct: 342 LLESFLDAGLWDEAWVETAPVVLG-AGVKAPAVPGVL 377 >gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae WA1] gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae WA1] Length = 360 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 117/320 (36%), Positives = 169/320 (52%), Gaps = 11/320 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67 M A+ ++ G TS NP V +IVKDG VIG G G HAE+ A +E GE Sbjct: 1 MKMAIEEAKKGEGFTSPNPLVGAVIVKDGKVIGIGYHKKCGENHAEINAFLDAKEKGENV 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 A YVTLEPCSHYG++PPCA II+ ++RV++ D + +V+G G++ L GI ++ Sbjct: 61 EDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEVI 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + + KR I +K A++ D I S IT ++ H Sbjct: 121 VNVLEEECRKLNEVFFYYIANKRPFIVMKYAMTIDGKIATVSGKSKWITSEKTREHSHRF 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TV+ D+P L CRL + +P+RIILD K+ LDS I KTA Sbjct: 181 RNKYSAIMVGINTVIEDNPTLNCRLPNTR--NPIRIILDSSLKMGLDSNICKTAKEIKTF 238 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGGAAVAHS 301 I T +DD I II + + LK L+ IL + + S+ VEGGAA+ S Sbjct: 239 IATISDDDKKIKELENVGIEIIKTENDNGKVSLKDLMRILGEEKDIDSVYVEGGAALHAS 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + +LV+ ++Y + + G Sbjct: 299 LLKEKLVNKALIYIAPKIFG 318 >gi|161830583|ref|YP_001596568.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331] gi|161762450|gb|ABX78092.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331] Length = 354 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKDVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +I+ N+ D +KNI I R DL ++L ++ G+ L +E G Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ L++ ++Y + ++G +P+ Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327 >gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756] gi|145847785|gb|EDK24703.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756] Length = 395 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 21/357 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 143 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 198 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R Q I+ GIGTVLADDP L R+ G + SP+RI+ D ++ S+I+K+A Sbjct: 199 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 256 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 I+ +N + + + IYC + DLKKL+ L RG+ S+L+EG Sbjct: 257 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 315 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 G + S + +V + + + + G +P+E +E V Y +D+C Sbjct: 316 GGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 370 >gi|29653981|ref|NP_819673.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii RSA 493] gi|29541244|gb|AAO90187.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii RSA 493] Length = 354 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 113/332 (34%), Positives = 175/332 (52%), Gaps = 10/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +I+ N+ D +KNI I R DL ++L ++ G+ L +E G Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ L++ ++Y + ++G +P+ Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327 >gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 2a str. 301] gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 2a str. 2457T] gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a str. 301] gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a str. 2457T] gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella flexneri 2002017] gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str. 2457T] gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71] gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671] gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71] gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218] gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304] Length = 367 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801] gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801] Length = 360 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 111/338 (32%), Positives = 184/338 (54%), Gaps = 5/338 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V + ES + A++ R + + LK A++ D I S ITG S Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH +RA DA++VG T+ D+P LT + G+ +P+R+++ L ++ + + Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTLDLPSEANLWQ 237 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 T + + ++I + L R + + +I ++ +L RG++S+L E G + Sbjct: 238 TDIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTL 297 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 A I ++ I+ + + +IG P P+ + LEK Sbjct: 298 AAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEK 335 >gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Synechococcus elongatus PCC 7942] gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Synechococcus elongatus PCC 7942] Length = 368 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 174/320 (54%), Gaps = 3/320 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL + Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQA 120 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V +E + A++ R ++R LK A++ D I + S ++ S+ Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH LR+Q DA++VG TV D+P LTC + + + P+R+++ L L++ + +T + Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTC--HDISDRHPLRVVMSRRLDLPLEANLWQTDI 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ E D + + ++ ++ L RG+++LL E G +A + Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + + ++ + + +IG Sbjct: 299 ALREGQIQKLLAFIAPKLIG 318 >gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas gardneri ATCC 19865] gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas gardneri ATCC 19865] Length = 364 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/328 (36%), Positives = 185/328 (56%), Gaps = 4/328 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D R M+ ALR + T NP V C+IV+DG+ +G G G HAEV AL Sbjct: 1 MSATADDHRCMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++ +M+++ ++ +L+R R + +K+ S D +A S ITG + Sbjct: 121 EAGIEVLSGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238 + V RA++ AIL G GTVLADDP +T RL P+R++LD + +L + I+ Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLR-TLACENIR 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + V +D +L + ++ DL +L L RG+ + VE GA + Sbjct: 240 QG-NAPTLYVHGDDVLPRSLDVAQFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + +++ LVD +++Y + +++G+ P Sbjct: 299 SGALLHAGLVDELLVYMAPVLLGDTARP 326 >gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer str. BVAF] gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer str. BVAF] Length = 383 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 175/349 (50%), Gaps = 41/349 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++S A + +R T NP+V C+IVKD VIG G G HAE+ AL AG Sbjct: 9 DIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINALSVAGNF 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSHYGR+PPC +I+ GI+RVVV + DP ++GRG+Q L Q GI+V Sbjct: 69 AKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGILV 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + ++ R I LK+A S D + M+ S IT S+ V Sbjct: 129 SHSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDVQC 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCR------------LNGLQEHSPMRIILDPHFKLSLD 233 RA+SD IL TVL D+P L R +NG Q P+R+I+D Sbjct: 189 FRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIID-------- 240 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC---------------DCRDLKKL 278 T + P +N+ V+ + +K N+N + +LKKL Sbjct: 241 ----STNRILPTHRFIQNEGGVILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKL 296 Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + L + S+ VE G ++ + ++ LVD +ILY++ +G P Sbjct: 297 MQYLACYLKINSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKP 345 >gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CFBP2957] gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CFBP2957] Length = 370 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 173/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++A Sbjct: 3 SDFDHVMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RNDGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILSA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 P +I + A + +I D + DL +L L R + L VE Sbjct: 242 DDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas acidaminovorans] gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas acidaminovorans] Length = 368 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 189/329 (57%), Gaps = 12/329 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A++ + G S NP V +IVK+ VI G T G H+E+QAL++AG++A+ Sbjct: 8 QYMQRAIKVAEKARGKCSPNPFVGSVIVKNNQVISEGWTLEYGSDHSEIQALKKAGKKAK 67 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT +VTLEPCSHYG++PPCAQ II+ GI+ V + + DP+ V G+G+ L + GI V Sbjct: 68 DATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLKEAGIDVHY 127 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +E + + L YL ++R +TLK A++ D + ITG ++ H LR Sbjct: 128 GFLEEKIRTQLECYLCYIQKERPFVTLKTALTLDGKYAAEDGTAHWITGKKAREYAHQLR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +++D +L GI T+L DDP L RL G P+R++LDP+ K+ + S + + P ++ Sbjct: 188 SENDVVLTGIMTILFDDPRLNVRLPG-NYKQPLRVVLDPYLKIPVLSYFVSISAKFPGMV 246 Query: 248 VTENDDPVLALA--FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 +T D+ A R+K + I + +D L ++L +L S+L+E G+ +A + Sbjct: 247 ITSPDNLQTDKADILRQKGVKIEALETKDGHFNLHEVLNLLYKMNYYSVLLETGSGIAEA 306 Query: 302 FINSRLVDSII-LYRSQIVIGEGGIPSPL 329 F+ L+D II +Y ++I+ GG SPL Sbjct: 307 FLKEELIDKIIFIYGAKIL---GGTKSPL 332 >gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC 27755] gi|166029624|gb|EDR48381.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC 27755] Length = 377 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 184/335 (54%), Gaps = 17/335 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G T+ NP V +IVKDG +IG G A G HAE A+ E Sbjct: 5 DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHARCGELHAERNAIASLTES 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + I+E I++VV+ DP+ +V+G+G + L G+ + Sbjct: 65 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGVAV 124 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M + IF H Y+T K ++ +K A++ D I S IT ++ Sbjct: 125 VEDFMRDKCDELNPIFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITQEAARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R + I+VGIGTVLADDP L R+ GL+ SP+RII D ++ LDS+I+K+A Sbjct: 181 EVQYMRHRYMGIMVGIGTVLADDPMLNVRVEGLK--SPVRIICDSKLRIPLDSQIVKSAR 238 Query: 242 LAPVIIVTENDDPVLALA--FRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGG 295 I+ + + V + + I++C D + +LK L+ L + S+L+EGG Sbjct: 239 EYRTIVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKHLMEYLGKENIDSILLEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 + S + + +V + + + + G G +P++ Sbjct: 299 GTLNDSALRAGVVQEVQAFIAPKIFGGAGSRTPVD 333 >gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 3_1_46FAA] gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 3_1_46FAA] Length = 375 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 21/357 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 123 VEDFMREECDQLNPVFFH-YITT---KTPYVVMKYAMTLDGKIATKTGASKWITGESARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R Q I+ GIGTVLADDP L R+ G + SP+RI+ D ++ S+I+K+A Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPGSQIVKSAE 236 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 I+ +N + + + IYC + DLKKL+ L RG+ S+L+EG Sbjct: 237 KYRTIVAYAEQKNAKEKIKI-LHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEG 295 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 G + S + +V + + + + G +P+E +E V Y +D+C Sbjct: 296 GGTLNDSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKY--TDIC 350 >gi|297621291|ref|YP_003709428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Waddlia chondrophila WSU 86-1044] gi|297376592|gb|ADI38422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Waddlia chondrophila WSU 86-1044] Length = 339 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 169/301 (56%), Gaps = 24/301 (7%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C++VK+G ++G G G PHAEV AL EAG+ ARGATAYVTLEPC H GR+ P Sbjct: 24 NPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQNARGATAYVTLEPCVHTGRTLP 83 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQV 146 C +IE G+ RVVV V+DPD +VSG G+ L GI V +E E ++ L YL + Sbjct: 84 CIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIKVTVGVEREAVELSLAPYLHHRR 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + K A+S D + S I+ ++ H +RA+S AIL+G GT + D P+ Sbjct: 144 TGRPFVIAKTALSIDGRAAASDKTSQWISCEAARRDAHEMRAESQAILIGAGTAVKDSPQ 203 Query: 207 LTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT R +N L + P+R++LDP+ K+ DS + LAP ++ +E +P Sbjct: 204 LTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLD-LAPTLVFSEKMEP----------- 251 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 +K+L+IL +GV LL+EGG F+ L+D +I+Y ++G G+ Sbjct: 252 ----------EKILSILGEKGVIQLLIEGGPTTITQFLQQHLIDRLIVYTGPCLLGSDGL 301 Query: 326 P 326 P Sbjct: 302 P 302 >gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB 8327] gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB 8327] Length = 371 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 13/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M L + G S NP V +IV DG VIG G G PHAE A+ +E Sbjct: 11 DEGHMRRCLELAERGAGSVSPNPMVGSVIVHDGRVIGEGWHQKYGGPHAEPHAIASVEDE 70 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV LEPCSH+G++PPCA I+E I RVVV DP +V+G+G+ L + G+ Sbjct: 71 ALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLREAGV 130 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E+E + A++T + R + LK A + D I + S ITG S+ +V Sbjct: 131 EVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEASRCEV 190 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DA+L G T LADD ELT R ++ P+R++LDP ++ + +I A Sbjct: 191 HRLRCAYDAVLCGASTALADDAELTVRFCAGRQ--PLRVLLDPRLQVPHEFRIFNDAAKT 248 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V + + +PVL + + ++ DL ++ L R V S++VEGG+ ++ Sbjct: 249 LVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDLAQVFAELHRRRVLSVMVEGGSRLS 308 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PLE--EGYLEKNFMCVRRDYFGSDVCLE 353 + + S +VD ++ + + G+ G+PS PL+ + R + FG D+ +E Sbjct: 309 AAMVRSGIVDKYYVFIAPKLFGDDGLPSFGPLDVIRPDMATKLSFTRVERFGEDLLVE 366 >gi|238024083|ref|YP_002908315.1| putative deaminase [Burkholderia glumae BGR1] gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1] gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae] gi|237878748|gb|ACR31080.1| Putative deaminase [Burkholderia glumae BGR1] Length = 384 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 184/336 (54%), Gaps = 31/336 (9%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + D +M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A+++A Sbjct: 18 ALDRAWMAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDAR 77 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG L + Sbjct: 78 SRGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137 Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V ++E E + +++R R + +K+A S D + S ITG ++ Sbjct: 138 AGIEVRGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGSAAR 197 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239 H RA++ +IL GIGTV DDP+L R G+ P R+++D L +++++ Sbjct: 198 ADGHAWRARACSILTGIGTVRRDDPQLNVR--GIDTPRQPRRVLIDARLDLPHEARLM-- 253 Query: 240 ALLAPVIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 A P++ E D V++LA + ++ DL +L L GR Sbjct: 254 AGPPPLVFCGELDASARARADALRARGAEVVSLASARGSV--------DLAAVLAELGGR 305 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G L VE G ++ + + + LVD +++Y + ++G Sbjct: 306 GDNELHVEAGRTLSGALLRAGLVDELLVYVAPSLLG 341 >gi|313673619|ref|YP_004051730.1| riboflavin biosynthesis protein ribd [Calditerrivibrio nitroreducens DSM 19672] gi|312940375|gb|ADR19567.1| riboflavin biosynthesis protein RibD [Calditerrivibrio nitroreducens DSM 19672] Length = 385 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 121/321 (37%), Positives = 170/321 (52%), Gaps = 7/321 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G TNP V ++VK+G VIGRG G PHAE++AL++ E G Sbjct: 8 MDEAIQLALMGKGYNYTNPIVGAVVVKNGKVIGRGYHTGFGMPHAEIEALKDCEESPEGG 67 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPCS G++PPC II+ GI+RV + V DP+ SG+ ++ L+ GI V Sbjct: 68 DLYVTLEPCSTTGKTPPCTDAIIKSGIKRVFIGVVDPNPNHSGKAIKILNDAGIEVFLGF 127 Query: 131 ESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + T+ + KR + TLK A S D MI + S I+G S+ VH LR+ Sbjct: 128 NEHVCAEIIEDFTKFILKRQPYFTLKAASSIDGMIATSTGDSKWISGESSRIYVHYLRSV 187 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 SD I+VGI TV DDP L R N +E P++IILD +S +SK++K +I T Sbjct: 188 SDGIIVGINTVKNDDPLLNVR-NFNREKEPLKIILDSKLSISPESKVVKDFGKYLIIATT 246 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 DD + ++ + ++ C + DL L LV + ++ VEGG V SFI Sbjct: 247 VRDDSKMD-NLKRYGVRVLICKEKNGFVDLMDLSDKLVSLNLLNIFVEGGGKVFASFIKE 305 Query: 306 RLVDSIILYRSQIVIGEGGIP 326 LVD + S VIG G+P Sbjct: 306 GLVDRFYHFISPKVIGGDGVP 326 >gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium eligens ATCC 27750] gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium eligens ATCC 27750] Length = 373 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 25/368 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M A+ ++ G + NP V +IVKD +IG G G HAE AL Sbjct: 10 SKQDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDDRIIGEGWHRKYGELHAERDALSRC 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GAT YVTLEPC H+G+ PPC + +++ GI RVV+ DP+ VSG+G+++L + G Sbjct: 70 MEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYLEEHG 129 Query: 124 IIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I V+ + +E +F H Y+ K ++ +K A + D I S ITG Sbjct: 130 IKVEGCVCNEECLAMNYVFFH-YIRN---KEPYVVMKTAQTLDGKIATYKGLSKWITGEQ 185 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237 ++ VH R + AI+VG+GTV+AD+P L CR + H+P+RII D + LDS+I+ Sbjct: 186 ARENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISNPHNPVRIICDSRLRTPLDSRIV 245 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 K+A P II T + D + +I DLK+L+ IL +G+ S+++E Sbjct: 246 KSAGQIPTIIATCSTDSDRKSLYENAGCEVIITKESEQHVDLKELMNILGEKGIDSVILE 305 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDY 345 GG + S + + +V+ + Y + + G EG + ++E Y +N VR Sbjct: 306 GGGTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVEGQGIANVDEAYRLRN-KTVR--L 362 Query: 346 FGSDVCLE 353 G D+ +E Sbjct: 363 LGDDILIE 370 >gi|303241094|ref|ZP_07327603.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus CD2] gi|302591354|gb|EFL61093.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus CD2] Length = 362 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 180/328 (54%), Gaps = 10/328 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS A+ ++ G T+ NP V +IVKD +I G G HAEV A + A E+ G Sbjct: 1 MSRAIELAKKGWGRTNPNPLVGAVIVKDERIIAEGFHEVIGGAHAEVSAFKNAVEDVAGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YV LEPCSHYGR+PPCA+ IIE I++VVV + DP+ +VSGRG+Q L GI V+ + Sbjct: 61 TLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E K ++ V K+ + LK A++ D I S +T S+ VH++R + Sbjct: 121 LEDEAKKLNEIFINYVVNKKPFVILKTAMTIDGKIASVSGDSKWVTSEASRGYVHIIRDR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +I+VGI T++ D+P LT RLN P+RI++D + DS+++ + A V++ T Sbjct: 181 VASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVDSKGIIPEDSRVLNSDSKAVVVLAT 240 Query: 250 ENDDPVLA---LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ +L + K + II D DL KL L + S+L+EGG + + Sbjct: 241 TSN--ILKEKEMYLIDKGVKIIKADGADGRVDLVKLTEELYKLEIDSILLEGGGNLNAAA 298 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330 + + +VD + + + ++G +P+E Sbjct: 299 LEAGIVDKAMFFIAPKILGGKEAVTPVE 326 >gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802] gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802] Length = 360 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/339 (33%), Positives = 187/339 (55%), Gaps = 7/339 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V + ES + A++ R + + LK A++ D I S ITG S Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH +RA DA++VG T+ D+P LT + G+ +P+R+++ L ++ + + Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTHEVAGV---NPLRVVMSKTLDLPSEANLWQ 237 Query: 239 TALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T +AP +++TE + L R + + +I ++ +L RG++S+L E G Sbjct: 238 TD-IAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 +A I ++ I+ + + +IG P P+ + LEK Sbjct: 297 LAAQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEK 335 >gi|85372857|ref|YP_456919.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis HTCC2594] gi|84785940|gb|ABC62122.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis HTCC2594] Length = 325 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/336 (38%), Positives = 172/336 (51%), Gaps = 47/336 (13%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83 +++ NP+V C+IVK VIGRG T GG PHAE ALE+AG++ARGAT YVTLEPC+H Sbjct: 24 VSAPNPAVGCIIVKQDRVIGRGWTRVGGRPHAEAAALEQAGQDARGATIYVTLEPCAHES 83 Query: 84 -RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 R P CA ++ +RVV+ DPD R G G+ L + GI V+ + L +L Sbjct: 84 DRGPSCADLLVAARPQRVVLAEVDPDRRTHGAGIARLRRSGITVETLPSPAAAASLAGFL 143 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 TR+ R H+TLK+A+S D I +A S ITG ++ H RA SDAILVG GT A Sbjct: 144 TRERLGRPHVTLKLALSLDGCIALASGESQWITGEEARAHCHSRRAMSDAILVGGGTWRA 203 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D P L RL GL++ SP R++L + + V I+ E A R Sbjct: 204 DKPRLDVRLPGLEDRSPQRVVL------------TRGVPIDGVRIINEP-----AQIDRL 246 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + +Y VEGGA A SF+ LVD + +YR+ IVIG Sbjct: 247 EAAQYLY----------------------VEGGAGAAASFLAENLVDRLDIYRAPIVIG- 283 Query: 323 GGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 GG P+ G + ++ V R GSD C E Sbjct: 284 GGKPAFGNIGLADLTSAHGSWKLVERRQLGSD-CYE 318 >gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G] gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68] Length = 361 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 ----TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 T +E + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSSEWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 370 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 185/341 (54%), Gaps = 17/341 (4%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG- 83 TS NP V +IVK+G +I G G PHAE +A+ A E +GAT YVTLEPC H Sbjct: 26 TSPNPMVGAVIVKNGKIISEGYHKKAGLPHAEAEAIRNANESLKGATLYVTLEPCCHKDK 85 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPC II GI RVV+ + DP+ +VSG+G++ L+ GI +++ ++E E K Y+ Sbjct: 86 KTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGIKVIEGVLEEEVKKLNEFYI 145 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R + LKIA++ D I S IT S+ VHL+R++ DA+L GTVL Sbjct: 146 KYITTSRPFVILKIAMTLDGKIATPLGESKWITSEKSRKFVHLIRSRVDALLSAYGTVLK 205 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--LLAPVIIVTENDDPVLALAF 260 D+P T R+ G + +P+R+I+DP K+ L+ + +A V ND + L Sbjct: 206 DNPMFTSRIKGGK--NPLRVIIDPELKIPLNYHVYNPPPNTIAVVHEKKLNDKNIKHLIH 263 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 R I + DL+ L+ L R +TSL++EGG+++ + S +VD ++++ + +I Sbjct: 264 RGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSLNSYALWSGIVDKLMIFIAPKII 323 Query: 321 G--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 G G I L+E + K+ ++ FG D+ +E Sbjct: 324 GGAQSYPSIGGNIYKNLDEAFEIKD---LKIRMFGGDIFIE 361 >gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102] gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102] Length = 407 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 115/335 (34%), Positives = 177/335 (52%), Gaps = 11/335 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD+R M L +R +G TS NP V +IVKDG ++G G G PHAEV AL+ A Sbjct: 36 TDFDSRMMLRCLELARRALGRTSPNPLVGAVIVKDGEIVGEGFHPRAGEPHAEVFALQAA 95 Query: 64 G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 G ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VVV + DP+ V+G G Sbjct: 96 GVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVVGMVDPNPLVAGGG 155 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L GI ++ + ES A++ R + KR LK A++ D I S + Sbjct: 156 IARLRAAGIEVLVGVEESACHQLNEAFVHRILYKRPLGILKYAMTLDGKIATTSGHSAWV 215 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T ++++VH LRA DAI+VG TV D+P LT + L+ H+P+R+++ H L + Sbjct: 216 TSQEARSEVHQLRAACDAIIVGGNTVRQDNPYLTS--HHLEAHNPLRVVMSRHLNLPESA 273 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + KTA +++ + +P + + I+ + L RG S+L E Sbjct: 274 HLWKTADAPTLVLTQKGANPDFQELLLNQGVEIVELTSLTPDNAMAYLYERGFCSVLWEC 333 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 G +A S I V ++ + + +IG P+P+ Sbjct: 334 GGTLAASAIAQGAVQKVLAFIAPKIIGGSIAPTPV 368 >gi|213962287|ref|ZP_03390550.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena Capno] gi|213954953|gb|EEB66272.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena Capno] Length = 323 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/318 (35%), Positives = 170/318 (53%), Gaps = 30/318 (9%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79 +G T NP V C+IV DG +IG G G PHAEV+A+ +++ +T YV+LEPC Sbjct: 13 LGTTYPNPLVGCVIVHDGKIIGEGWHQKAGEPHAEVRAIASVKDKSLLAESTLYVSLEPC 72 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138 +HYG++PPCA II I RVV+ DP +V+GRG++ L G V +ME E + Sbjct: 73 NHYGKTPPCADLIITHRIPRVVIGTTDPFAKVAGRGIEKLRDAGCEVTVGVMEKECRELN 132 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMA---GCGSVPITGFISKNQVHLLRAQSDAILV 195 + T +KR +I LK A + D I A V IT ++ +VH +R++ AILV Sbjct: 133 KRFFTFHEKKRPYIFLKWAETADGFIAPAHKDTLAPVWITDVYTRQEVHKMRSEEQAILV 192 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD-- 253 G+GTVLAD+P L R +P+R+I+DPH + + K+ L P + +T + Sbjct: 193 GVGTVLADNPSLDTR--DWYGKNPLRVIIDPHLRSPKEFKVWND--LQPTLFITNKEKVS 248 Query: 254 --------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ + F N+ CD +L R + SL+VEGGA FIN+ Sbjct: 249 DKNYGVQTEIIGIDF-THNVPQQICD---------LLYQRNIQSLIVEGGAYTLQQFINA 298 Query: 306 RLVDSIILYRSQIVIGEG 323 L D + +Y+S++ G+G Sbjct: 299 GLYDEMRIYKSEVSFGKG 316 >gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [Chlorobium ferrooxidans DSM 13031] gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [Chlorobium ferrooxidans DSM 13031] Length = 369 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 195/366 (53%), Gaps = 17/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ + + G S NP V +IV DG++IG G G PHAEV A+ ++ Sbjct: 8 DTVYMNRCIELALKGGGTVSPNPMVGSVIVCDGVIIGEGFHERYGAPHAEVNAIASVADQ 67 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 R +T YV LEPCSH+G++PPC+ IIE GI RVVV DP V V+G+G+ L GI Sbjct: 68 ELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAKLLGAGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++E+ A++ ++LK+A + D I + S ITG ++ +V Sbjct: 128 AVTEGVLEAACVKLNEAFIKSHTTGLPFVSLKLAETLDGKIATSLGASKWITGEAARMEV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LRA+ DA++VG TV DD ELT R +P+R++LD L ++SKI T A Sbjct: 188 HRLRARYDAVVVGEATVRCDDAELTVR--HCSGRNPLRVVLDRRLSLPVESKIFNTE--A 243 Query: 244 PVIIVTENDDPVLALA--FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 P I+ + L A R++ + +++ DL+++L L G+ S+LVEGG+ Sbjct: 244 PTILFASSAWEGLEKAGLLRERGVTVLFVREHAGELDLRQVLEELHKHGILSILVEGGSR 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCLE 353 ++ SFI RLVD I ++ + + G + S G + V + +FGSD+ LE Sbjct: 304 LSASFIRERLVDKIYMFIAPKLFGGDALSSFAPLGISIPDDAVVLKFETPRFFGSDLLLE 363 Query: 354 YIGKNL 359 ++L Sbjct: 364 AYVQSL 369 >gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ralstonia eutropha JMP134] gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ralstonia eutropha JMP134] Length = 371 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/309 (35%), Positives = 171/309 (55%), Gaps = 12/309 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81 T+ NP V C++ K+G +IG+G T G HAE+QAL++A G + GATAYVTLEPCSH Sbjct: 24 TTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTLEPCSH 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140 +GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L GI V ++E E + Sbjct: 84 FGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLNIG 143 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +++R + +K+A S D + S ITG +++ H RA++ AIL GIGTV Sbjct: 144 FVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLA 257 D+P++T R P R+++D ++ LD++I+ L PV++ + DD Sbjct: 204 RDDNPQMTVRAIPTPRQ-PQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVDDRERR 262 Query: 258 LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A + ++ +L+K+L L RG+ L VE G + S I D +++ Sbjct: 263 HALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCADELLI 322 Query: 314 YRSQIVIGE 322 Y + ++G+ Sbjct: 323 YLAPKLLGD 331 >gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202] gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202] Length = 364 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/367 (32%), Positives = 196/367 (53%), Gaps = 22/367 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ FD +M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+ Sbjct: 1 MTDFD--YMARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILN 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + RGATAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L Sbjct: 59 SSADLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDA 118 Query: 123 GI-IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI +V M E IF H T KR ++ LK A++ D I + S ITG Sbjct: 119 GIEVVTDFMREECDRLNPIFFHYIQT----KRPYVLLKYAMTADGKIATSTGESKWITGE 174 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +++ +V R Q AI+VG+ TVLAD+P L R+ ++ P+RI+ D + LD +++ Sbjct: 175 LARAKVQETRHQYSAIMVGVETVLADNPMLNSRMPNAKQ--PVRIVCDSSLRTPLDCQLV 232 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 +TA II T +DD F+ ++++ C + DL+ LL L + SLL+E Sbjct: 233 QTAKEYRTIIATVSDDLQKIAQFQPLGVDVLVCKAKDKRVDLQDLLQKLGEMQIDSLLLE 292 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEK--NFMCVRRDYFGS 348 GG+++ S + + +V+ + Y + ++G +P+ G L + + G Sbjct: 293 GGSSLNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQAVKLQLQSTELIGE 352 Query: 349 DVCLEYI 355 D+ L+Y+ Sbjct: 353 DILLDYV 359 >gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia gladioli BSR3] gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia gladioli BSR3] Length = 372 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 179/331 (54%), Gaps = 17/331 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL S + TS NP V C+IVKD +VIG G T G HAEVQA+++A Sbjct: 3 SESDFAHMQRALDLSSRGMYTTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ VSG+GL L Sbjct: 63 RSRGHDLRGATVYVTLEPCSHFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E + +++R + + +K A+S D + S ITG + Sbjct: 123 DAGIEVRCGLLAQEAREMNIGFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV DDP+LT R G+ P+R+++D ++SL++K++ Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPLRVLVDSRLEVSLEAKLLS 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D A A R + ++ DL LL L RG+ L Sbjct: 241 G---APILIFCGELDAAGEGRAAALRDRGAEVVPLAGPNGKVDLPALLQALGKRGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 VE G + S + VD +++Y + ++G+ Sbjct: 298 VEAGHKLNGSLLREGCVDELLIYVAPTLLGD 328 >gi|154706505|ref|YP_001424060.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii Dugway 5J108-111] gi|154355791|gb|ABS77253.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii Dugway 5J108-111] Length = 354 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/332 (33%), Positives = 174/332 (52%), Gaps = 10/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + ++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLDDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ ILD H +L L++ I +TA Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPI-YILDTHLRLPLNALIHQTA 237 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +I+ N+ D +KNI I R DL ++L ++ G+ L +E G Sbjct: 238 --ESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ L++ ++Y + ++G +P+ Sbjct: 296 GTCFQSFLKENLINRALIYIAPKILGSTAMPA 327 >gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA] gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA] Length = 359 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 196/367 (53%), Gaps = 35/367 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEA 67 ++M A+ ++ G T+ NP V +IVKDG VIG G AYGG HAE AL+ ++ Sbjct: 4 QYMRRAIELAKKGTGYTNPNPLVGAVIVKDGEVIGEGFHEAYGGL-HAERNALKSCTKDP 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--- 124 GA YVTLEPC HYGR+PPC + +I+ GIR+V V DP+ +V+G G++ L + GI Sbjct: 63 NGAELYVTLEPCCHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEAE 122 Query: 125 --IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I+D IF + Y+T ++ LK A++ D I + S ITG ++ Sbjct: 123 TGILDEECRGLNDIFFY-YITHDT---PYVVLKYAMTLDGKIAVRTGESKWITGGEAREH 178 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V LR + AIL GI TV++DDP L R+ G ++P+R+I D ++ + SKI+++A + Sbjct: 179 VQFLRHRYAAILTGIHTVISDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKV 236 Query: 243 APVIIV----TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEG 294 P II E + AL R ++ C +D K +L+ IL + S+LVEG Sbjct: 237 IPTIIAACERNEKAQRLEALGCR-----VLICPGKDGKTDLLELMRILRKEKIDSVLVEG 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFG 347 GA + S I + V+ + + + + G SP+E ++K N + R FG Sbjct: 292 GADINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITR--FG 349 Query: 348 SDVCLEY 354 D+ LEY Sbjct: 350 EDLLLEY 356 >gi|312113516|ref|YP_004011112.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC 17100] gi|311218645|gb|ADP70013.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC 17100] Length = 398 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/324 (36%), Positives = 181/324 (55%), Gaps = 13/324 (4%) Query: 14 ALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 AL ++ ++G TS NPSV ++ + G +I TA GG PHAEV AL EAG+ A+GA Sbjct: 37 ALFVAQTNIGATSPNPSVGAVVADARTGEIIASAATARGGRPHAEVLALREAGDRAKGAL 96 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 TLEPCSH+G +PPCA I+ GI ++ DPD RV GRGL +++Q G+ R Sbjct: 97 IITTLEPCSHFGATPPCAHSIVNAGISHLIYGSLDPDTRVGGRGLTYVAQHGVRATRGTP 156 Query: 132 SEGK--IFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + +LH + R E+R + +K+AV + + V ITG +++ HLLRA Sbjct: 157 AFVRDCDWLHLGHSLRVTERRPFVQVKLAVDAAGFVPLGNGKPVFITGDVARAAAHLLRA 216 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++DAILVG TV ADDPELTCRL GL + SP+R++L + +K+ P + + Sbjct: 217 RADAILVGRKTVEADDPELTCRLPGLADRSPVRVVLASRCNVPPAAKLFANER--PPVWI 274 Query: 249 TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D A F + + ++ +L+ + + G+T LLVEGG + A FI Sbjct: 275 VCGDSTEGAAFFGRPGVRVLDIGASLTGRLNLRLAMMRVAAEGITRLLVEGGPSTARGFI 334 Query: 304 NSRLVDSIILYR-SQIVIGEGGIP 326 ++ L D +I+ + +Q + + G+P Sbjct: 335 DAGLADEVIIMQGTQTLDPQAGMP 358 >gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946] gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946] Length = 383 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 203/374 (54%), Gaps = 35/374 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + +G TS NP V C++V+ V+GRG G PHAEV AL +AGE Sbjct: 6 DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGAEVVGRGFHPRAGEPHAEVLALRQAGER 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAY+TLEPC+HYGR+PPCAQ +IE G+ RVVV DP+ +VSGRGL+ L++ G+ V Sbjct: 66 AQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVAV 125 Query: 127 DRMM-----ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + E + ++F H R+ + K A+S D + ++G ++ Sbjct: 126 TTGLLRDEAERQQEVFRHWIAHRE----PFVVFKTALSLDGKTATVAGDARWVSGEAARE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI---IK 238 +V LLR + DA++VG+GTVL DDP LTCRL + P R+ DP K+ D+ + Sbjct: 182 RVQLLRDELDAVVVGVGTVLTDDPWLTCRLR--EPAVPHRVPRDP-VKVVFDTHARTPPR 238 Query: 239 TALLAP---------VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVG 284 L AP ++++ E DP R+ ++ + L+ L L Sbjct: 239 ARLFAPGPRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAGPDGRPRLEAALQALEA 298 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFM 339 RG+T LL+EGG+ +A SF ++ V ++ + + ++G G P+PL + ++ Sbjct: 299 RGLTGLLLEGGSVLAGSFFDAGKVHKVVAFVAPKLVGGRG-PTPLAGNGVARMSQARHLE 357 Query: 340 CVRRDYFGSDVCLE 353 VR + G+DV +E Sbjct: 358 RVRVEPLGTDVLVE 371 >gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SK82] gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SH164] gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SK82] gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SH164] Length = 362 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/324 (35%), Positives = 180/324 (55%), Gaps = 19/324 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AGE+ Sbjct: 8 DYFYMRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAGEQ 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G+ L Q GI V Sbjct: 68 AQDATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGIEV 127 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+E +L ++ LK+A S D MA S ITG ++ V Sbjct: 128 ESGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDVQH 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241 RA S ++ GI TVL DD +L R L+G + P R++LD +L L ++I+ + Sbjct: 188 WRAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILASP- 246 Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 + ++ FR++ ++ +I + LK LL L + + +LVE GA + Sbjct: 247 ----------EQLMVMGPFRQELADLGVIQLPLQPLKGLLQTLCNQYQIFDVLVEAGATL 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322 + +F+ +LVD +I Y + +G+ Sbjct: 297 SSAFLQEKLVDEMISYVAPTFLGQ 320 >gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM 14684] gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM 14684] Length = 374 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 113/338 (33%), Positives = 175/338 (51%), Gaps = 10/338 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D ++ AL + G S NP V +I +DG V+ G + G PHAEV+A+ Sbjct: 4 PTTDTDRLHLARALELAAQGRGRVSPNPMVGAVITRDGEVVAEGWHSEYGAPHAEVEAIA 63 Query: 62 EAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ + GAT YV+LEPC H G+ PPC I+ GIRRVVV DDP + SGRGL L Sbjct: 64 AAGDADLSGATLYVSLEPCCHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILR 123 Query: 121 QKGI---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 +G+ + + + ++ + + R + K A++ D + S I+ Sbjct: 124 DEGVDVAVAGGELAARARLLNQPFRKQARTGRPWVLFKSAMTLDGKVATRAGDSKWISST 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S+ + H RA+ DA+ VGIGT LADDP+LT R+ G+ P R++ D ++ LDS+++ Sbjct: 184 QSRERAHHWRAECDAVAVGIGTALADDPQLTARIPGVARQ-PRRVVFDSLARVPLDSQLV 242 Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 + A P+ +V P A A +I + + L L GV S+L+ Sbjct: 243 QAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVVSALDQLGAVGVASILL 302 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 EGG +A +F+++ +D + L+ + IV+G PLE Sbjct: 303 EGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLE 340 >gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 367 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 178/328 (54%), Gaps = 16/328 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V GRGL L Q+GI V Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQDAENINKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP +T R L QE+ P+RII+D +++ + Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWEELNADTQALYPQENLRQPLRIIVDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 +I++ I T+ D R +I + + +L +L+G+ V S+ VE Sbjct: 243 RIVQQPGET-WIARTKEDTREWPEGVR--SIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + LVD ++Y + ++G Sbjct: 300 AGPMLAGALLQAGLVDEFLVYVAPKLLG 327 >gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella boydii ATCC 9905] Length = 367 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 192/370 (51%), Gaps = 26/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LR+QS AIL TVLADDP LT R + L E + P+RI++D +++ Sbjct: 183 LRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYF 346 VE G +A + + + LVD +I+Y + ++G G+ + LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHV 356 Query: 347 GSDVCLEYIG 356 G DVCL +G Sbjct: 357 GPDVCLHLVG 366 >gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [butyrate-producing bacterium SS3/4] Length = 369 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/341 (35%), Positives = 184/341 (53%), Gaps = 25/341 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G TS NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKDGRIIGEGYHERCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ V+G+G L G+ V Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGVRV 122 Query: 127 DR-MMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + M E +F H Y+T+ K ++ +K A++ D I S ITG ++ Sbjct: 123 EEDFMREECDALNPVFFH-YITK---KTPYVVMKYAMTADGKIAARTGDSKWITGESARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V LR Q I+ GIGTVLADDP L R+ GL+ SP+RII D ++ +DS+I+KTA Sbjct: 179 KVQELRHQYMGIMAGIGTVLADDPMLNVRIPGLK--SPVRIICDSGLRIPMDSQIVKTAK 236 Query: 242 LAPVIIV------------TENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVT 288 I+ E + L A + +++ D R DL+KL+ L +G+ Sbjct: 237 EYRTIVAYAGEHSGEGCKEAEEKEEQLHTAG-VETVSVPDADGRVDLRKLMEYLGKQGID 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S+L+EGG + + +++ +V+ I + + + G G +P+ Sbjct: 296 SVLLEGGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPV 336 >gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96] gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96] gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia pyrifoliae DSM 12163] Length = 367 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 179/330 (54%), Gaps = 14/330 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L S P+R+I+D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEY 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +++ A + + D + I +Y + DL LL +L + + S+ VE Sbjct: 243 RLV--AQPGETWLARTSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA A + + + +VD +I+Y + ++G+ G Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAG 330 >gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Protochlamydia amoebophila UWE25] gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Protochlamydia amoebophila UWE25] Length = 368 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 176/340 (51%), Gaps = 21/340 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTST-NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M S FM A+ S W L + NP V C+IVKD +IG+G T G HAE+ A Sbjct: 1 MKNSEIHHTFMLEAIAES-WKARLHAPPNPWVGCVIVKDQKIIGKGYTYPSGQAHAEINA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L+ A E A+GA+ YVTLEPCSH+G++PPC + II GI V V + DPD RV G+G+Q L Sbjct: 60 LKSASENAKGASLYVTLEPCSHHGKTPPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKL 119 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V + E E K+ L YL ++ + + LKIA S D S +T Sbjct: 120 REAGIHVKVGIGEKEAKVVLTPYLYQRESQIPYTVLKIATSVDGRTAAVDGTSQWLTSSE 179 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILD-----PHFKLSL 232 ++ HL RA S A+++G GT D P+LT R + P RI++D P L Sbjct: 180 ARLDAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLF 239 Query: 233 DSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRG 286 D K LAP +++T + + K +I +L++ +L RG Sbjct: 240 DQK------LAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRG 293 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +LVEGG+ + + + LV+ + +Y ++IG+ G+P Sbjct: 294 IIQVLVEGGSTLQSALLEIGLVNCLSVYTGPLLIGKSGLP 333 >gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM 2926] gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM 2926] Length = 359 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 115/360 (31%), Positives = 189/360 (52%), Gaps = 17/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL+ + G + NP V ++VK+G ++G G G PHAEV AL EAG E Sbjct: 2 DKKYMETALKLALKGEGNVNPNPMVGAVVVKNGTIVGEGYHKQYGGPHAEVYALNEAGSE 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGAT YVTLEPCSHYG++PPCA+ IIE GI++ V+ DP+ V+GRG++ L + GI V Sbjct: 62 CRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIEV 121 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +ME E ++ ++ + LK A++ D I S IT +S+ +V Sbjct: 122 EVGLMEKEALELNRVFMKYITTEKPFVFLKCAITLDGKIAARTGSSKWITNEVSREKVQR 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG T++ D+P L R+ G + P RI++DP + DS + Sbjct: 182 LRHRFMGIMVGANTLVMDNPRLNARIEG--GNDPFRIVIDPELIVPSDSNFASMKDGKSI 239 Query: 246 IIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ +E + + V L R + D + +L + + S+L+EGG+ + Sbjct: 240 IVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKISDILKKVGELKIDSVLLEGGSYLISKA 299 Query: 303 INSRLVDSIILYRSQIVIG-EGGIP-------SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +D ++ + ++G + GIP +EE + KN V+ + +G+++ +E+ Sbjct: 300 FEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIEEAFELKN---VKFNQYGNNISVEF 356 >gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012] gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012] gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74] Length = 367 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 190/371 (51%), Gaps = 28/371 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 LR+QS AIL TVLADDP L R + L E + P+RI++D +++ Sbjct: 183 LRSQSHAILTSSATVLADDPALIVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ E+ + V L + ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRH 355 Query: 346 FGSDVCLEYIG 356 G DVCL +G Sbjct: 356 VGPDVCLHLVG 366 >gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus nematophila ATCC 19061] gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus nematophila ATCC 19061] Length = 369 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 174/333 (52%), Gaps = 22/333 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +MS AL + TS NP+V C+IVKD ++G G G PHAEV AL AG Sbjct: 3 TLDEIYMSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRMAG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A+GATAYVTLEPCSH+G++PPCA +I G+ RVVV + DP+ +V+GRGL L Q GI Sbjct: 63 EKAKGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQAGI 122 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ +M + + +L R ++ LK+ S D ++ S IT ++ V Sbjct: 123 AVEHGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQDV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSL 232 LRAQ AIL TVLADDP +T R N L + P+RII D +++ Sbjct: 183 QTLRAQCSAILSSSATVLADDPSMTVRWNELDAETQSVYPEERLRQPIRIITDSQNRVTP 242 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288 ++I+ + +N+ N+ I DL L+ L R + Sbjct: 243 QHQVIQQTGQCWLAYTNKNEQ------HWPDNVKQILLPAHGGGVDLVLLMMQLGKRQIN 296 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 S+ E G A+A + ++ LVD +ILY + V+G Sbjct: 297 SVWAECGPALAGALLSLGLVDELILYIAPKVLG 329 >gi|83951487|ref|ZP_00960219.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM] gi|83836493|gb|EAP75790.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM] Length = 364 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 136/332 (40%), Positives = 192/332 (57%), Gaps = 9/332 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D M ALR R +G NP+V C+IV ++GRG TA GG PHAE QAL E Sbjct: 1 MSEQDIHHMREALRLGRSAMGSAWPNPAVGCVIVAGDQIVGRGATAPGGRPHAEPQALAE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I+ G+ RVVV V D D RVSGRG++ L + Sbjct: 61 AGAAARGATAYVTLEPCAHHGKTPPCAEVLIKAGVARVVVAVGDSDPRVSGRGIEMLRKA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++E E + L + R E R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVVQGVLEDEARTDLAGFFLRIEEGRPWVTLKLASSFDGRIATASGHSQWITGPEARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP-HFKLSLDSKIIKTA 240 +VH RA+ DA++VG GT AD+P LT R GL ++ + L S++ +TA Sbjct: 181 RVHEFRARHDAVMVGAGTARADNPMLTVR--GLDVPRQPVRVVVSRRLDVPLMSELARTA 238 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 PV + D D L A++ ++ C ++ +L L RG+T + EGG Sbjct: 239 GEVPVWMCHGPDADKSLREAWQGLGAELVECRLHGRQLEIGSVLQALGERGLTRVFCEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 A+A S +++ LVD +I + + +VIG G+P Sbjct: 299 GALAASLLSAGLVDELIGFTAGVVIGAEGLPG 330 >gi|262373927|ref|ZP_06067204.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205] gi|262310938|gb|EEY92025.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205] Length = 366 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/331 (37%), Positives = 186/331 (56%), Gaps = 21/331 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S + +M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AG Sbjct: 10 SENQYWMQQAIDLARRGQYSTKPNPNVGCVIVKDGKIIGEGFHPKAGQPHAEVFALRQAG 69 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+ ATAYVTLEPC+H+GR+PPCA+ +++ +++VVV DP+ V+G+G++ L GI Sbjct: 70 ENAKDATAYVTLEPCAHFGRTPPCAEALVKAQVKKVVVACSDPNPLVAGKGVKILQDAGI 129 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + + E K +L ++ LKIA S D MA S ITG ++ V Sbjct: 130 EVETGICDEEAKTLNFGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTAARQDV 189 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKT 239 RA S A++ GI TVLADD EL R L+G+ S P RIILD +L L +KI+ Sbjct: 190 QHWRAISAAVITGIQTVLADDCELNVRSLDGVDLSSVVQPKRIILDRQGQLPLSAKIL-- 247 Query: 240 ALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295 +N + V+ + FR++ ++ +I + L +LL L + + +LVE G Sbjct: 248 ----------QNPETVMVMTPFRQELADLGVIQLAPQPLNQLLQTLTQQYQIYDVLVEAG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 A ++ +F+ LVD +I Y + ++G+ P Sbjct: 298 ATLSTAFLEQGLVDEMISYVAPTLLGQSARP 328 >gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum GMI1000] gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 370 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/329 (36%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++A Sbjct: 3 SDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 63 QARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V ++E E + +++R + +K+ S D + S IT + Sbjct: 123 EAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 183 RADGHRWRARACAILTGIGTVREDNPRLTVRAIPTPRQ-PRRILIDSGLDVPLDAHILTA 241 Query: 240 -ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEG 294 P +I + A + +I D + DL +L L R + L VE Sbjct: 242 DGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + S + LVD I++Y + V+G G Sbjct: 302 GYKLNGSLLREGLVDEILVYLAPKVLGSG 330 >gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens DSM 7] gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens DSM 7] gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens TA208] gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens LL3] Length = 371 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 173/329 (52%), Gaps = 20/329 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A+ +R G T NP V ++VK+G ++G G G HAEV A+ AG A+G Sbjct: 5 YMNTAIELARRGEGQTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMAGSHAKG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L GI Sbjct: 65 ADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIEVKTG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ + E K+FLH T ++TLK A S D S IT ++ Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG GTV AD+P LTCRL + P+R+ILD + + ++ T AP Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTVPETANVL-TDGAAP 238 Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I T D + AL + + + D + ++L+IL G+ S+ VEGGA+V Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIK---VFTLETDRIHIPEVLSILAENGIMSVYVEGGASV 295 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ + D + Y + +IG PS Sbjct: 296 HGSFVKAGCFDELHFYFAPTLIGGTLAPS 324 >gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1] gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1] Length = 363 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 176/320 (55%), Gaps = 8/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + +M AL ++ G T+ NP+V ++VKDG ++G G G PHAEV A+ +AG + Sbjct: 3 EQEYMKLALSLAKAGKGQTAPNPAVGAVVVKDGEIVGMGAHLKAGDPHAEVHAIRQAGSK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC+H G++PPCA I+E ++RV + DP+ V+G+G+ L + GI + Sbjct: 63 AEGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS-HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E E + L+A+ ++ ++ ++TLK AV+ D S IT S+ VH Sbjct: 123 VTGICEKEA-LELNAHFFHFIQTKTPYVTLKSAVTLDGKTAAYTGDSKWITSEESRLDVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R DAILVG+ TV+ D+P LT RL G + +P+R++LD H ++ L+S I+ Sbjct: 182 KYRHHHDAILVGVNTVINDNPLLTTRLPRGGK--NPIRVVLDSHLRIPLESDILNIEHAK 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHS 301 +I K + + + L K +L L VTSL VEGG+A+ S Sbjct: 240 TIIFCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQRLGELNVTSLFVEGGSAIHFS 299 Query: 302 FINSRLVDSIILYRSQIVIG 321 F+ + +++Y + ++G Sbjct: 300 FLKEKAYQEVVIYMAPKLVG 319 >gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 2603V/R] gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae A909] gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae H36B] gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae 2603V/R] gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae A909] gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae H36B] Length = 369 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G Sbjct: 7 YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ Sbjct: 67 STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E ++ K+ + LK A++ D I S I+ S+ V LR Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304 Query: 305 SRLVDSIILYRSQIVIG 321 + +V+ +I++ + +IG Sbjct: 305 AGIVNRLIVFIAPKIIG 321 >gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142] gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142] Length = 364 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 181/338 (53%), Gaps = 5/338 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D + M L +R +G TS NP V +IVK+G +IG G G PHAEV AL Sbjct: 2 MTPDNVDQQMMQRCLTLARRGLGYTSPNPLVGAVIVKEGKIIGEGFHLKAGEPHAEVFAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L Sbjct: 62 REAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQ 121 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V +E + L+ A+ R + + LK A++ D I + S +TG S Sbjct: 122 EAGIEVTVGVEEAACLRLNEAFCHRILHNQPFGILKYAMTLDGKISSSTGHSAWVTGTKS 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +RA DA++VG TV D+P LT ++ +P+R+++ + L D+ + Sbjct: 182 RQLVHEMRAGCDAVIVGGNTVRRDNPHLT--IHQATGRNPLRVVMSRNLHLPQDANLWNV 239 Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +AP I+ TE +P L R+K + +I +++ +L R ++S+L E G + Sbjct: 240 E-IAPTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCERQLSSILWECGGVL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 A I + I+ + + +IG SP+ LEK Sbjct: 299 AAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEK 336 >gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2M] gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2] gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD1] gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD1] gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2] gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2M] Length = 373 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++A Sbjct: 3 SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV DDP+LT R G+ P R+++D +L LD+++++ Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPQRVLVDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 A L + D A A + + I+ DL +L+ L RG+ L VE Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198] gi|225202294|gb|EEG84648.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198] Length = 384 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 188/372 (50%), Gaps = 32/372 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + TS NP+V C+IVK+G ++G G + G PHAEV AL+ AG++ Sbjct: 17 DEHYMRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMAGDK 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI V Sbjct: 77 AKGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGIDV 136 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M+ K+ + + R +I LK+ S D +A S IT S+ V Sbjct: 137 SHGILMQEAEKLNV-GFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQ 195 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233 RAQ+ AIL TVLAD+P + R + L + P+RI+ D +++ + Sbjct: 196 NFRAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTEN 255 Query: 234 SKIIKTA---LLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 KI + LA + + + + L KN + DL L+ L R + Sbjct: 256 HKITQIEGECWLARTKLQPSDWQGNVSEILLPTNGKNSGV------DLVLLMMQLGKRNI 309 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRR 343 ++ VE GA A + + + LVD +I+Y + ++G+ SPL F Sbjct: 310 NTVWVESGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSL 369 Query: 344 DYFGSD--VCLE 353 GSD VCL+ Sbjct: 370 QQIGSDIRVCLK 381 >gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001] gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001] Length = 385 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 124/358 (34%), Positives = 186/358 (51%), Gaps = 23/358 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL ++ + T NP V C+IV++G VIG G T G HAE++A+++A Sbjct: 3 SQTDFVHMERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGAT YVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E + +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLEVSPQAQILAG 241 Query: 240 ALLAPVIIVTENDDPVLA---LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I N D + A R + I+ DL +L +L R V L V Sbjct: 242 ---APTLIFCGNLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRR 343 E G + S + VD +++Y + ++G + P+ L EG ++ F V R Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLGNDSMSMFNLSAPATL-EGRVKLAFHNVER 355 >gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC 700669] gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae ATCC 700669] Length = 366 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--ERKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis TXDOH] Length = 378 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2148] gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2148] Length = 371 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 179/345 (51%), Gaps = 31/345 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + R M+ AL+ +R NP V C++ +DG VIG G T G HAEVQAL E Sbjct: 2 ATELNTRMMARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQALAE 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GATAYVTLEPCSH G++ PCA +I G+ RV ++DP+ V+G GL L Sbjct: 62 AGD-ASGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E++ + + +++R R + K+A+S D MA S ITG ++ Sbjct: 121 GIEVEVGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA S A++ GIGTVL+DD LT R L + P+R++LD + + Sbjct: 181 DVQRLRAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTP 240 Query: 232 LDSKIIKTA----------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 + I+ A L A IV D LAL + +N L +L+ Sbjct: 241 ASAAILDGAAPTLICHDEKLDASTAIVASGVD-RLALGGDENGLN--------LAQLIDY 291 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 L R +LVE G +A +F+ L+D +I+Y + +++G P Sbjct: 292 LSARQSNEILVECGPRLAGAFVREGLLDELIVYMAPVLMGSAARP 336 >gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Megamonas hypermegale ART12/1] Length = 360 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 186/332 (56%), Gaps = 22/332 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + +G TS NP V +IVKD V+G G G PHAEV AL +AGE A+GA Sbjct: 1 MRLAMQLAGNAIGRTSPNPLVGAVIVKDNRVVGCGWHREAGTPHAEVHALNQAGELAQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPC+HYG++PPC++ ++E ++ V + D + +V+G+G + L GI V+ Sbjct: 61 DVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAGIHVEYG- 119 Query: 131 ESEGKIFLHAYLTRQVE--------KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 FL L +Q E K+ I LK A++ D I A S IT S+ Sbjct: 120 ------FLQDELRKQNEVFFKWIEHKKPFIVLKAAMTLDGKIATATGQSKWITNETSRAY 173 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 + LR D I+VGI TV+ D+P LT R++G + +P+RI++D K+ +++ + + Sbjct: 174 GYKLRDIYDGIMVGINTVIEDNPMLTARVDGGK--NPIRIVVDSSLKIDINANVAQDKSA 231 Query: 243 APVIIVTE--NDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++ T+ + D +L L + ++ ++ D D++KLL IL + + S+LVEGGA Sbjct: 232 KTIVATTDKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILGQQNICSILVEGGAT 291 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 ++ SF+ +LVD + + + ++G +P+ Sbjct: 292 LSGSFVAKKLVDKVYFFIAPKIVGGKEAKTPV 323 >gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella excrementihominis YIT 11859] gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella excrementihominis YIT 11859] Length = 355 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 109/304 (35%), Positives = 168/304 (55%), Gaps = 12/304 (3%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGR 84 NP+V C+IVKD +IG G T G HAEV AL +A GE GAT YVTLEPCSHYGR Sbjct: 18 NPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESVAGATVYVTLEPCSHYGR 77 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHAYLT 143 +PPCA + + RVV + DP+ V+G+GL+ L + G+ V+ +E+ E + +L Sbjct: 78 TPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVECGLEAEEAEEINRGFLK 137 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 RQ E + K+A+S D +A S IT ++ H R S A+L G+GTVLAD Sbjct: 138 RQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFWRGISGAVLTGLGTVLAD 197 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P++T R G+ P+++++D + L+ D KI + ++V + D V A F + Sbjct: 198 NPQMTARFEGVTRQ-PLKVVVDSNLSLNPDLKIFQG---GKTLLVCAHYDIVRAENFESQ 253 Query: 264 NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + +I + DL+ L+ L R + + VE GA + + L+D ++Y + + Sbjct: 254 GVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGALAMEGLIDEYLIYVAPVF 313 Query: 320 IGEG 323 +G+G Sbjct: 314 LGDG 317 >gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio vulnificus MO6-24/O] gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio vulnificus MO6-24/O] Length = 368 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 182/334 (54%), Gaps = 24/334 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ A Sbjct: 5 TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + G Sbjct: 65 GDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 125 IEVSVGLLQTEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RAQS AIL TVLAD+ L R + L Q P R++LD +LS Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQLALPQEQLRQPTRVVLDRQAELS 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290 + K+ +T +I+ + D P A ++ I DL +L L + + L Sbjct: 245 PELKLYQTE-GERLIVGPKGDLP----APLDEHGQI------DLPQLFAQLSQTQSINHL 293 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +E GA +A I +LVD +I+Y + ++G G Sbjct: 294 WIEAGATLAAKLIKHQLVDELIVYLAPKLMGSDG 327 >gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1] gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1] Length = 369 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 173/334 (51%), Gaps = 23/334 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D + MS AL ++ T+ NP+V C+I + V+G G G PHAEV AL A Sbjct: 5 SAIDYQMMSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHALRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG L + G Sbjct: 65 AERAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNMLREAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + + +L + + LK+A S D +A S ITG ++ Sbjct: 125 IEVSVGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPEARRD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V RAQS AIL TV+ D+ L R + L H P R+ILD LS Sbjct: 185 VQAYRAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPDELRQPTRVILDRQNALS 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290 + K+ + +E D +A A N+ + + DL + L L + + + Sbjct: 245 RELKLFQ----------SEGDIIRVAQAGGDLNVTMNSANQLDLAETLQGLAKDQQINHV 294 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +E GA +A S I +LVD +I+Y + ++G G Sbjct: 295 WIEAGATLAGSMIQQQLVDELIVYLAPKLMGADG 328 >gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae CJB111] gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae CJB111] Length = 369 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G Sbjct: 7 YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ Sbjct: 67 STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E ++ K+ + LK A++ D I S I+ S+ V LR Sbjct: 127 ILREECDALNERFIFYMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304 Query: 305 SRLVDSIILYRSQIVIG 321 + +V+ +I++ + +IG Sbjct: 305 AGIVNRLIVFIAPKIIG 321 >gi|284037818|ref|YP_003387748.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74] gi|283817111|gb|ADB38949.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74] Length = 352 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 27/361 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQA- 59 S D RFM AL + G S NP V C+I +IG G G HAEV A Sbjct: 7 SVDERFMRRALELATLGRGHVSPNPMVGCVITHGSGSQERIIGEGWHKRYGDWHAEVNAV 66 Query: 60 ---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L E + AT YVTLEPCSH+G++PPCA +IE ++RVV C DDP+ VSG+G Sbjct: 67 NSVLPEHQQLLSEATVYVTLEPCSHWGKTPPCADLLIERHVKRVVCCNDDPNPLVSGQGF 126 Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI V+ ++ +G++ + T +KR +I LK A + D I AG V I+ Sbjct: 127 AKLRAAGIQVETGVLAEQGRLLNARFFTFFEQKRPYILLKWAETADGFIAGAGGQPVKIS 186 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G ++ VH R + DAILVG T D+P L RL + P R++LD + L+ D Sbjct: 187 GDLAHRLVHRWRGEEDAILVGANTARLDNPRLNTRL--WEGKDPTRVVLDRNLTLTTDLH 244 Query: 236 IIKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + V ++ D P L N+ Y L ++++ L R V S+LVEG Sbjct: 245 LFDGSQPTLVYHASQTDALPDLP--------NVQYVVAESLYQVMSDLYQRKVQSVLVEG 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GA V ++F+ + L D + ++RS+ ++G G+ +P G + R+ G D Y Sbjct: 297 GAVVLNAFMEAGLWDEMRVFRSRTMLGN-GVKAPTVRGIIHS------REKVGDDELTSY 349 Query: 355 I 355 + Sbjct: 350 M 350 >gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC 17616] gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia multivorans ATCC 17616] gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC 17616] gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia multivorans ATCC 17616] Length = 373 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++A Sbjct: 3 SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV DDP+LT R G+ P R+++D +L LD+++++ Sbjct: 183 RADGHAWRARACAILTGIGTVREDDPQLTVR--GVDTPRQPQRVLVDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 A L + D A A + + I+ DL +L+ L RG+ L VE Sbjct: 241 GAPLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|15805190|ref|NP_293877.1| riboflavin-specific deaminase [Deinococcus radiodurans R1] gi|6457821|gb|AAF09742.1|AE001878_1 riboflavin-specific deaminase [Deinococcus radiodurans R1] Length = 357 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 189/354 (53%), Gaps = 18/354 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV----IGRGVTAYGGCPHAEVQALEE 62 DA +M AL + +G TS NP V C+IV+DG + +GRG G PHAEV AL E Sbjct: 8 DAEYMQLALNEAAKGLGRTSPNPPVGCVIVRDGEIASEIVGRGFHPKAGEPHAEVFALRE 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ +V+GRGL+ L Sbjct: 68 AGERARGATAYVTLEPCSHDGRTPPCADALIAAGVARVVVAAGDPNPQVNGRGLEKLRAA 127 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + + A V + R H+ K A++ D + G+ P++G ++ Sbjct: 128 GIEVATGVLEAAAVRQQAGFRSLVTRGRPHVIYKYAMTLDGKVAALNEGNGPVSGPEARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + DA+ VG T L D+P+L R L+G ++ P ++ DP L ++ ++ Sbjct: 188 RVMAWRNEVDAVAVGARTALLDNPQLNVRGLDGGRD--PRAVLFDPEGHLPASARAVREG 245 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V+++ E L +++ + L+ L L G GV +LL+EGG +A Sbjct: 246 T---VLVLREGRSTPL-----ERDPRVTVLHAHSLQGALEQLAGLGVATLLLEGGPTLAS 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +F + L+D + ++ + ++G G P +P+ + R + G+DV + Sbjct: 298 AFFEAGLIDELRVFVAPKLLGAGLSPLLAPVRSMHAATELAVERVEVVGNDVLV 351 >gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 70585] gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 70585] Length = 366 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 176/326 (53%), Gaps = 8/326 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILY-RSQIVIGEGGIP 326 + ++VD + +Y S+I G P Sbjct: 301 ALEQQIVDELKIYIASKIFGGSAKFP 326 >gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662] gi|167654296|gb|EDR98425.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662] Length = 354 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 130/365 (35%), Positives = 194/365 (53%), Gaps = 35/365 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ ++ G T+ NP V +IVKDG VIG G AYGG HAE AL+ E+ +G Sbjct: 1 MRRAIELAQKGTGHTNPNPLVGAVIVKDGQVIGEGFHEAYGGL-HAERNALKSCTEDPKG 59 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPC HYG++PPC + +I+ GIR+V V DP+ +V+G G++ L + GI Sbjct: 60 AELYVTLEPCCHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKVETG 119 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 I+D IF + Y+T ++ LK A++ D I + S ITG ++ V Sbjct: 120 ILDEECRELNDIFFY-YITHDT---PYVALKYAMTLDGKIAVKTGESKWITGGEAREHVQ 175 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + AIL GI TV+ DDP L R+ G ++P+R+I D ++ + SKI+++A + P Sbjct: 176 FLRHRYAAILTGIHTVIGDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIP 233 Query: 245 VIIV----TENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGA 296 II E + AL R ++ C +D K +L+ IL + S+LVEGGA Sbjct: 234 TIIAACERNEKAQRLEALGCR-----VLICPGKDGKTDLLELMRILRKEKIDSVLVEGGA 288 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSD 349 + S I + V+ + + + + G SP+E ++K N + R FG D Sbjct: 289 DINDSVIQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITR--FGED 346 Query: 350 VCLEY 354 + LEY Sbjct: 347 LLLEY 351 >gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. LSU-61] Length = 361 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 189/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L Q H P+RI++D +++ + I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae TIGR4] gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae TIGR4] Length = 366 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + V G Sbjct: 301 ALEQQIVDELKIYIAPKVFG 320 >gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp. WGA-A3] gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp. WGA-A3] Length = 362 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 115/316 (36%), Positives = 170/316 (53%), Gaps = 18/316 (5%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG-RSPPCA 89 V +IV DG V+G G G PHAE+ AL +A +RGAT Y TLEPC H R+PPC Sbjct: 2 VGAVIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEPCCHTNKRTPPCV 61 Query: 90 QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEK 148 I+ G+RR+V+ + DP+V+V+GRG++ L + G+ VD + E YL K Sbjct: 62 PAILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQLNEVYLHWMKTK 121 Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + LK A++ D I A S ITG ++ VH LR+Q D I VG+ TVL DDP+LT Sbjct: 122 RPFVVLKAAMTLDGKIATASGESQWITGAKARAHVHQLRSQVDVIAVGVETVLKDDPQLT 181 Query: 209 CRLNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRK 262 RL+G Q + P+R+I+D + +++++ AP +I T P RK Sbjct: 182 VRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIEQAPTVIATTKLAGPRKVERLRK 241 Query: 263 KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS-- 316 + ++ + L K L L G+ S+L+EGG+ + +F+ + LV+ + LY + Sbjct: 242 MGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGSELNAAFLRAGLVNRVALYVAPS 301 Query: 317 ----QIVIGEGGIPSP 328 Q+ G G PSP Sbjct: 302 LLGGQLTKGLLGGPSP 317 >gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC 13124] gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC 13124] Length = 371 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 181/339 (53%), Gaps = 16/339 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + Sbjct: 5 DNLDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSS 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + G Sbjct: 65 IKSTEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESG 124 Query: 124 IIVD-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I V ++E E +IF + Y+ E R I LK A++ D I S IT Sbjct: 125 IEVKVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKI 236 S+ VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I Sbjct: 181 SREFVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEI 240 Query: 237 IKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 +K + +I T N D + + I +I + ++ ++L L + + S+L Sbjct: 241 LKNQNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 +EGG + +F+ ++ V+ I + + V G +P+E Sbjct: 301 IEGGGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 339 >gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 378 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 366 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515] gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515] Length = 369 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G Sbjct: 7 YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ Sbjct: 67 STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E ++ K+ + LK A++ D I S I+ S+ V LR Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSALK 304 Query: 305 SRLVDSIILYRSQIVIG 321 + +V+ +I++ + +IG Sbjct: 305 AGIVNRLIVFIAPKIIG 321 >gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus taiwanensis LMG 19424] gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus taiwanensis LMG 19424] Length = 371 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 12/309 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81 T+ NP V C+++KDG VIG+G T G HAE+QA+++A G + GATAYVTLEPCSH Sbjct: 24 TTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTLEPCSH 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140 +GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L GI V ++E E + Sbjct: 84 FGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLNIG 143 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +++R + +K+A S D + S ITG +++ H RA++ AIL GIGTV Sbjct: 144 FVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLA 257 D+P LT R P R+++D ++ LD++I+ PV++ +D Sbjct: 204 RDDNPALTVRAFATPRQ-PQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVEDRQRQ 262 Query: 258 LAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A + ++ +L+++L L RG+ L VE G + S + D +++ Sbjct: 263 RALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELLI 322 Query: 314 YRSQIVIGE 322 Y + ++G+ Sbjct: 323 YLAPKLLGD 331 >gi|71066695|ref|YP_265422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter arcticus 273-4] gi|71039680|gb|AAZ19988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter arcticus 273-4] Length = 351 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/357 (35%), Positives = 191/357 (53%), Gaps = 33/357 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ ++ + T NP+V C+IV+ V+G+G G PHAEV AL++AG Sbjct: 12 DRYFMMLAIEQAKLGLYSTRPNPAVGCVIVQAEEVVGQGFHPKVGQPHAEVFALKDAGIR 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q GI V Sbjct: 72 AVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVRLLEQAGIEV 131 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++ ++ +L + ++ LKIA S D MA S ITG ++ V Sbjct: 132 TVGILTAQAEVLNKGFLKAMRTQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDVQK 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIKTA 240 LRAQS AI+ G TV+ D+P+L R + L Q P +ILD +L + + Sbjct: 192 LRAQSGAIITGSETVIVDNPQLNVRSSQLGIAPEQVPHPKVVILDRRERLQYNLQ----- 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299 D L + +I+Y +L +LL +LV +L+E GA+VA Sbjct: 247 -----------SDYQLC-----RRTDILYWRDDNLTELLKVLVSEYQCYDVLIEAGASVA 290 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ +LVD +I+Y++ ++G+ +PL + F R + GSD+ L Sbjct: 291 GSFLQQQLVDELIVYQAPCLLGQQARSMVDINPLSLAQ-QLRFDIKRYEQLGSDMKL 346 >gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1087-00] gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1087-00] Length = 366 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|331012488|gb|EGH92544.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 249 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 102/242 (42%), Positives = 140/242 (57%), Gaps = 11/242 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245 Query: 233 DS 234 D+ Sbjct: 246 DA 247 >gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC 13813] Length = 369 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 180/317 (56%), Gaps = 7/317 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G Sbjct: 7 YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ Sbjct: 67 STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E ++ K+ + LK A++ D I S I+ S+ V LR Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSALE 304 Query: 305 SRLVDSIILYRSQIVIG 321 + +V+ +I++ + +IG Sbjct: 305 AGIVNRLIVFIAPKIIG 321 >gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703] gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703] Length = 370 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 182/337 (54%), Gaps = 24/337 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R + TS NP+V C+IV+DG V+G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 66 AQGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLHQAGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + +L R ++ LK+ S D MA S IT ++ V Sbjct: 126 CHGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQARQDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP L R L QE P+RII+D +++ + Sbjct: 186 FRARSSAILSSSATVLADDPSLAVRWQELDADTQRIYPQESLRQPVRIIVDSQSRVTPEH 245 Query: 235 KII----KTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCRDLKKLLTILVGRGVTS 289 +++ T L P + D LA + I++ +Y + DL L+ +L R + S Sbjct: 246 RLVSQPGSTWLARP-----QRDG--LAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQINS 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + VE G +A + + + +VD +I+Y + ++G+ P Sbjct: 299 VWVEAGPRLAGALLQANVVDELIVYIAPRLLGDAARP 335 >gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC0288-04] gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA] gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI 1974] gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI 1974M2] gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC0288-04] gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA] gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae INV104] gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA41301] gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA47901] Length = 366 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003] gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003] Length = 384 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 119/329 (36%), Positives = 173/329 (52%), Gaps = 15/329 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL +R + T NP V C+IV++G VIG G T G HAE++A+++A Sbjct: 3 SQTDFVHMERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP +T R P R+++D ++ ++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVETPRQ-PQRVLIDSQLEVPPQAQILAG 241 Query: 240 ALLAPVIIVTENDDP---VLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLV 292 AP +I N D A A R + I+ DL +L L R V L V Sbjct: 242 ---APTLIFCGNLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 E G + S + VD +++Y + ++G Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327 >gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16] gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16] Length = 371 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 173/310 (55%), Gaps = 12/310 (3%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCS 80 +T+ NP V C++VKDG VIG+G T G HAE+QA+++A G + G+TAYVTLEPCS Sbjct: 23 ITTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTLEPCS 82 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLH 139 H+GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L + G+ V ++E E + Sbjct: 83 HFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEARDLNI 142 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +++R + +K+A S D + S ITG +++ H RA++ AIL GIGT Sbjct: 143 GFVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGT 202 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTALLA-PVIIVTENDDPVL 256 V D+P LT R P R+++D ++ LD++I+ T A PV++ +D Sbjct: 203 VRDDNPALTVRAIATPRQ-PQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVEDRER 261 Query: 257 ALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A + ++ +L+++L L RG+ L VE G + S + D ++ Sbjct: 262 QRALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELL 321 Query: 313 LYRSQIVIGE 322 +Y + ++G+ Sbjct: 322 IYLAPKLLGD 331 >gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont] Length = 367 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 122/324 (37%), Positives = 175/324 (54%), Gaps = 22/324 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DAHYMARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMAGDH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 ACGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLAD+P LT R N L E P+R+++D +++ Sbjct: 183 LRARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSL 290 ++I ++ TE D A ++ ++ I R DL ++ +L R + S+ Sbjct: 243 RLIAQP-GETWLMRTEAD----AQSW-PSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSV 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILY 314 VE GA +A + + + LVD +I+Y Sbjct: 297 WVEAGAGLAGALLQAGLVDELIVY 320 >gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016] gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016] Length = 368 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 177/333 (53%), Gaps = 22/333 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ A Sbjct: 5 TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + G Sbjct: 65 ADKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 125 IEVSVGLLQAEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RAQS AIL TVLAD+ L R + L Q P R++LD +LS Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELS 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + K+ +T +I+ + D P + N+ ++ + + L Sbjct: 245 PELKLYQTE-GERLIVGPKGDLPAPLDEHGQINLPQLFTQLSQTQS---------INHLW 294 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A I +LVD +I+Y + ++G G Sbjct: 295 VEAGATLAAGLIKHQLVDELIVYLAPKLMGSDG 327 >gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ] gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ] Length = 361 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 124/333 (37%), Positives = 173/333 (51%), Gaps = 24/333 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV G ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQAGETARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCSH+GR+PPCA+ ++ G+ RVV + DP+ +VSGRGL L Q GI V+ + Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ R + +K+A+S D MA S ITG ++ V LRA+ Sbjct: 121 LEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVL D LT R L + P+R+++D ++ LD + Sbjct: 181 SSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLDVPFFQA 240 Query: 240 --ALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVE 293 AL+A V E D +R ++ D R DL LL L RG +LVE Sbjct: 241 GPALVATVSAEREVD-------YRAAGHELLAVPGEDGRVDLPALLAELAARGANEVLVE 293 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 G +A +F LVD L+ + +G P Sbjct: 294 AGPRLAGAFARQGLVDEYRLFVAPKFLGSTARP 326 >gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula marina DSM 3645] gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula marina DSM 3645] Length = 373 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 191/372 (51%), Gaps = 15/372 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D R M AL+ + G NP V C++V+ G VIGRG A G PHAE AL Sbjct: 1 MQFSADDERHMREALQLAALGQGAAEPNPMVGCVLVQHGQVIGRGYHAKYGGPHAERAAL 60 Query: 61 EEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + G+ + GATAYVTLEPC H+G++PPC +I + RVV+ DP V G G+ L Sbjct: 61 SDCGDKQVNGATAYVTLEPCCHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGIDQL 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V ++E+E + Y R + K A++ D + S I+ + Sbjct: 121 KAAGISVQVGLLEAEAQRLNAPYRKLLATGRPWVIAKWAMTLDGKLATHTGHSRWISNEL 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +VH LR + DAI+VG T DDP LT R GL+ +P+R+++D LS ++++ Sbjct: 181 ARERVHQLRGRMDAIVVGSRTAQLDDPLLTVRPAGLR--TPLRVVVDGDATLSPTHQLVQ 238 Query: 239 TALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 TA PV++ + + DP A ++ I D L LL L R +T++LVE Sbjct: 239 TAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADHGQRLDALLIELGQRRLTNILVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDVCL 352 GGA + F+ +D + + + +IG PSP+ +G+ + + SDV + Sbjct: 299 GGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGGDGWSDMSEALAL-----SDVSI 353 Query: 353 EYIGKNLCLQEL 364 E +G N+ + L Sbjct: 354 ESLGDNVLMHGL 365 >gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides BS1] gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides BS1] Length = 371 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 21/360 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEE 66 R+MS L + G S NP V L+V DG +IG G G PHAEV A+ + E+ Sbjct: 14 RYMSRCLELAGKGAGYVSPNPMVGSLLVLDGQIIGEGYHERYGGPHAEVNAIASVKDSEQ 73 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 R +T YV LEPCSH+G++PPC+ II+ I RVVV DP V+GRG+Q L G+ + Sbjct: 74 LRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAGVEV 133 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E A++ V+ ++LK+ + D I S ITG +++ VH Sbjct: 134 IEGVLEERSLKLNEAFMKSHVKNIPFVSLKLGQTLDGKIATVNGLSKWITGQPARDHVHF 193 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR++ DA++ G GT++ADDP LT R L +P+R++LD +L + A Sbjct: 194 LRSRYDAVMTGSGTIVADDPLLTVR--HLPGRNPLRVVLDRRLQLPETMNVYNGE--AAT 249 Query: 246 IIVTENDDPVLALAFR--KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ T + R K + ++ R DL ++L +L GV S+ VE G+ ++ Sbjct: 250 IVFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHVLHANGVLSVFVEAGSRLS 309 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PL----EEGYLEKNFMCVRRDYFGSDVCLE 353 S + S LVD I LY + + G G+ S PL +G + F +FG+D+ LE Sbjct: 310 GSLLQSGLVDKIYLYVAPKIFGGDGLDSFAPLGVDSPQGAISLRFESPV--FFGNDLLLE 367 >gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2] Length = 404 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 193/367 (52%), Gaps = 24/367 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ A+R ++ TS NP V C+IV + IG+G G PHAE+ AL EAG Sbjct: 37 IDYYWMAKAIRLAQKGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREAG 96 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV+ + DP+ VSG G++ L GI Sbjct: 97 KKAKGATAYVTLEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAGI 156 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +M +E ++ R + + ++ +K+ +S D I + S ITG ++ V Sbjct: 157 EVSSDIMSAESAALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRDV 216 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLSLD 233 RAQS A+L G GTV AD+P L R L +++ P+RII++ LS D Sbjct: 217 QHYRAQSCAVLTGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQ--PVRIIVNSADDLSRD 274 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 + + P +V+ + A ++++ + + + D+ KL+ L + V Sbjct: 275 YRCMNDG--HPTFVVSTQNS---ADTDNRQHLTVDAMNGKVDISKLMLQLGDMQFNEVWV 329 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGS 348 E G +A + + + VD +I Y++ ++G+ G+ + E N + G+ Sbjct: 330 EAGPGLAGALLIAGEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGN 389 Query: 349 DVCLEYI 355 D+ L Y+ Sbjct: 390 DIKLRYL 396 >gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7] gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7] Length = 369 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 113/328 (34%), Positives = 169/328 (51%), Gaps = 10/328 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66 FM AL + +G S NP V +IV+DG +I G G HAE A E + Sbjct: 6 FMREALALAEKGMGHVSPNPMVGAVIVRDGNIIASGYHKRYGDLHAERSAFAECDAKDID 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGA YVTLEPC H+G+ PPC +IE GI+RV V DP+ V+G+G L + GI + Sbjct: 66 CRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + +TLK A++ D I S ITG ++ VH Sbjct: 126 TEGVLKDECDRLNEIFFKFITTGLPFVTLKYAMTLDGKIACYTGKSQWITGETARKHVHR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R AI+VG+GTVLADDP LTCR+ +++ P+RII D H + LDS I++T+ P Sbjct: 186 ERLHHAAIMVGVGTVLADDPMLTCRIKNVRD--PLRIICDTHLRTPLDSNIVRTSEKVPT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +IV + D + K+ ++ + DL L+ L + S+L+EGG + S Sbjct: 244 LIVCGDADSGRIGEYEKRGCKVLSLPDKNGSTDLSALMAYLGKEKIDSVLIEGGGMLGWS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + S +VD ++ Y + + G +P+ Sbjct: 304 ALESGIVDKVMAYVAPKIFGGSNAKTPV 331 >gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273] gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium luteolum DSM 273] Length = 366 Score = 182 bits (462), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 187/360 (51%), Gaps = 17/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA M+ + + G S NP V LIV DG VIG G G PHAEV A+ + Sbjct: 6 DACHMARCIELALQGAGSVSPNPMVGSLIVCDGSVIGEGYHMQCGGPHAEVNAIAAVSDP 65 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV LEPCSH+GR+PPC+ IIE I RVVV DP+ +V+GRG+ L G+ Sbjct: 66 SLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLRDSGV 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++E+E A++T + R + LKIA + D I A S ITG ++ +V Sbjct: 126 DVYEGVLEAECLRLNEAFITSHTKGRPFVALKIAETLDGRIATADGASKWITGSEARREV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR+ DA+L G TVL D +LT R ++ +P+R++LD ++ D+ + + Sbjct: 186 HRLRSTYDAVLAGAATVLLDRAQLTVR--DVEGRNPLRVVLDSGLRVPFDAPVFSSDAPT 243 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V A A KK I +++ DL ++L L R V SLLVE G+ ++ Sbjct: 244 LVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQVLRELHRRDVLSLLVESGSRLS 303 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS--PLE----EGYLEKNFMCVRRDYFGSDVCLE 353 +F+ + L D ++++ + + G +PS PL G ++ F + FG D+ LE Sbjct: 304 AAFVRAGLADKLLMFIAPKLFGADALPSFAPLAVEAPSGAVQLEFG--QSKAFGRDILLE 361 >gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC 8239] gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC 8239] Length = 365 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 180/336 (53%), Gaps = 16/336 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + + Sbjct: 2 DEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIKS 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + GI V Sbjct: 62 TEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGIEV 121 Query: 127 D-RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 ++E E +IF + Y+ E R I LK A++ D I S IT S+ Sbjct: 122 KVGVLEKECIRLNEIF-NFYIK---ENRPFIALKWAMTLDGKIATKEFKSKWITNRKSRE 177 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 178 FVHSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKN 237 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + +I T N D + + I +I + ++ ++L L + + S+L+EG Sbjct: 238 QNESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEG 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 G + +F+ ++ V+ I + + V G +P+E Sbjct: 298 GGNLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVE 333 >gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 112] gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1655] gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1655] gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] Length = 380 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 5 str. 8401] gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 5 str. 8401] gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70] gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6] Length = 361 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 188/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 7894] gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei BCC215] gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] Length = 378 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus atrophaeus 1942] gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus atrophaeus 1942] Length = 363 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 172/335 (51%), Gaps = 24/335 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ AL ++ G T +NP V ++VK+G ++G G G HAEV A++ AG+ Sbjct: 1 MEEYYMNTALELAKQGEGQTGSNPLVGAVVVKNGEIVGMGAHLKYGEAHAEVHAIKMAGK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+G+G+ + GI Sbjct: 61 HVKDADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIE 120 Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I+ E + FLH T ++TLK A S D + S IT ++ Sbjct: 121 VKEGILTDQAEKLNEKFLHYMRT----GLPYVTLKAAASLDGKTATSTGDSKWITSEAAR 176 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKT 239 R +ILVG+GTV AD+P LTCRL N +++ P+R+ILD + ++K+I Sbjct: 177 QDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNTVKQ--PVRVILDTSLTIPEEAKVILD 234 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLV 292 I T D A +KK ++ L+ +L IL G+ S+ V Sbjct: 235 QAAPTWIFTTSQAD-----AEKKKRLSDFGVKIFTLENGHIHIPDVLKILAEEGIMSVYV 289 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 EGGAAV SF+ II Y + +IG PS Sbjct: 290 EGGAAVHGSFVKEGCYQEIIFYIAPKLIGGTHAPS 324 >gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 23344] gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse 4] gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1] gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10229] gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10247] gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20] gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 10399] gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH] gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU] gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei 2002721280] gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 23344] gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1] gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10229] gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10247] gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH] gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU] gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei 2002721280] gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 10399] gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse 4] gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20] Length = 380 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|282889950|ref|ZP_06298485.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500143|gb|EFB42427.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 359 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 115/325 (35%), Positives = 174/325 (53%), Gaps = 9/325 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + L+ NP V +IVK G ++G G T G HAE+ AL +A +A + Sbjct: 1 MDRALALATQARLLSPPNPWVGAVIVKQGKIVGEGFTQAPGEAHAEIMALRQALHQAENS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YVTLEPCSH+G++PPC II+ I VV+ ++DPD +VSGRG+Q L + GI V + Sbjct: 61 TLYVTLEPCSHFGKTPPCVNAIIQAKIAHVVIALEDPDPQVSGRGIQKLKEAGISVTVGV 120 Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + L YL ++ R K A+S D + + S IT +S+ LRA+ Sbjct: 121 EQQRATELLEPYLFQRKTGRPFCVAKAAISLDGRVAASDHTSKWITNELSRQDAQRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLS-LDSKIIKTALLAPVII 247 S AIL+G GT D P LT R + L +P+R++LD L+ L S + T L I+ Sbjct: 181 SQAILIGSGTAKYDHPRLTVRSFSPLPYQAPLRVVLDSRGTLTDLSSPLFNTNLAPTCIL 240 Query: 248 VTENDDPVLALAFRKKNI-NIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 T+ + ++ I +II + DL +++ L +G+ +L+EGGA + Sbjct: 241 TTDRCSTEIRDMWQSHGIESIILSQAKNGEGVDLNEVMKTLGKKGILQVLIEGGATLLGQ 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 F++ +L+ ++ LY V+G GIP Sbjct: 301 FMHEQLIQTLHLYIGPKVLGCDGIP 325 >gi|315179335|gb|ADT86249.1| riboflavin biosynthesis protein RibD [Vibrio furnissii NCTC 11218] Length = 369 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 177/338 (52%), Gaps = 24/338 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V ++E++ A++ R + LK+A S D +A S IT Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227 ++ V RAQ+ A+L TVLAD+ LT R L H P+R ILD Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286 +L + + T + V+ V D V + +N L+++L L Sbjct: 241 HQLHRELTLYATD--SAVLRVANQDADVCVALDEQGQLN--------LREVLGALAKHHN 290 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + VE GA +A S + LVD +++Y + ++G G Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDG 328 >gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 373 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 177/334 (52%), Gaps = 12/334 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D ++M+ A+ ++ TS NP+V C++VKDG ++G+G G HAEV AL Sbjct: 1 MSFTALDYQYMALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E+A GATAYVTLEPCSH GR+ PCA ++ G+ +V+ + DP+ VSGRGL L Sbjct: 61 AQAKEQALGATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +M+ E + +L R + K+A S D +A S ITG ++ Sbjct: 121 KAGIQTAHGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231 + QV RAQS A+L G TVL D+ ++ R + L Q P+R+++D +L+ Sbjct: 181 RAQVQDYRAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLT 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSL 290 D + + +PVII+T D ++ + + + DL + + +L RG+ + Sbjct: 241 PDLAFFQ--IESPVIILTTKLDISERWPHFVSHLLVPELNGQVDLSQAMQLLGARGINHI 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +E G +A LVD I Y + +IG G Sbjct: 299 WLEAGHTLAGQMAQQGLVDQFIFYLAPKLIGHSG 332 >gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6] gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39] gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016] gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP14] gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae BS455] gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus pneumoniae AP200] gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6] gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39] gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP14] gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016] gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae INV200] gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae BS455] gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus pneumoniae AP200] Length = 366 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 110/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|229542331|ref|ZP_04431391.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1] gi|229326751|gb|EEN92426.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1] Length = 370 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 178/324 (54%), Gaps = 7/324 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL + G TS NP V ++VK+G + G G HAE A+E+AG A G Sbjct: 6 YMQLALHLAESVAGQTSPNPPVGSVVVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLAEG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 A +VTLEPC+HYG++PPCA F+IE GI+ V + DP+ V+G+G++ L Q G+ V+ Sbjct: 66 AEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKVETG 125 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ + + + K +T+K A++ D I S IT ++ LR+ Sbjct: 126 ILKEQAEKLYRPFFHFIQTKTPFVTVKTAMTADGKIASETRDSKWITSEEARRDARRLRS 185 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVGI TVL D+P LT RL ++ +P+RI+LD H ++ ++K++ AP II Sbjct: 186 RHDAILVGIQTVLHDNPLLTTRLPHSRK-NPIRIVLDTHLRIPPEAKVLSGD--APTIIF 242 Query: 249 TENDDPV-LALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D P ++ ++ ++ L + +L L +G+ +LLVEGGAAV SF+ Sbjct: 243 CGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGEKGIMTLLVEGGAAVNGSFLKE 302 Query: 306 RLVDSIILYRSQIVIGEGGIPSPL 329 V I Y + VIG PSP Sbjct: 303 GAVQQYIFYIAPKVIGGKNAPSPF 326 >gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase, reductase [Burkholderia pseudomallei K96243] gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei DM98] gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14] gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9] gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei B7210] gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei NCTC 13177] gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 406e] gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase, reductase [Burkholderia pseudomallei K96243] gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 406e] gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] Length = 378 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|148976617|ref|ZP_01813304.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3] gi|145963968|gb|EDK29226.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3] Length = 367 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 180/336 (53%), Gaps = 27/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S D + MS A+ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ Sbjct: 5 SPLDFQMMSRAIHLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRM 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GAT YVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L Sbjct: 65 AGDKAKGATVYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDA 124 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E + A++ R + LK+A S D +A S IT ++ Sbjct: 125 GIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSPAARR 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKL 230 V RA++ A+L TV+ D+ L R L Q H P+R+ILD +L Sbjct: 185 DVQNYRAKAGAVLSTSQTVIDDNASLNVRWAELPSSAQAHYAEANVRQPVRVILDRQNQL 244 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVT 288 P + + ++ PVL +A +I I + DL +L+ L + Sbjct: 245 R------------PELKLYQSPTPVLRVAEASADIEIGTTETGQLDLHELMCQLPANHID 292 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + VE GA +A S I ++LVD +ILY + ++G G Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDG 328 >gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophus aciditrophicus SB] gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophus aciditrophicus SB] Length = 380 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 117/324 (36%), Positives = 176/324 (54%), Gaps = 9/324 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ +R G S NP V +IVK+ +IG G G HAE+ AL A E Sbjct: 3 DEFYMKRALQLARKGEGWVSPNPMVGSVIVKNDRIIGEGYHRKFGEAHAEINALNGAKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YV+LEPCSHYG++PPC + ++ C +RVV+ DP+ V+GRG+ L + GI V Sbjct: 63 AEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIEV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + ++L + +TLK A + D I + S I+ S+ H Sbjct: 123 TVGVLEEVCREINESFLKFIQFRIPFVTLKYAQTLDGRIATSTGHSRWISSPPSRRFAHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVGIGTVL+DDPELT RL ++ +P+RI+LD ++ L ++I++ A Sbjct: 183 LRHAHDAILVGIGTVLSDDPELTVRL--VRGKNPLRIVLDSRLRIPLTARILQEQDQAKT 240 Query: 246 IIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++VT + L+ + I + DL +LL L RG+ S+LVEGG+ + Sbjct: 241 LMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRLLRELGSRGIASVLVEGGSGIL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 + + L D +I + + G G Sbjct: 301 TALMAQDLADRLIAIIAPKISGRG 324 >gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis MSMB43] Length = 374 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 173/327 (52%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPC+ +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ A+L GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 REDGHKWRARACAVLTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L ++ A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDSQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G + S + R VD +++Y + ++G Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces bingchenggensis BCW-1] Length = 378 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 175/334 (52%), Gaps = 17/334 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 ++ +A M A+ + +G TS NP V C+I+ DG G G G PHAEV AL Sbjct: 2 ATTAEAEAMRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALR 61 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARG TA VTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + +G + Sbjct: 62 AAGERARGGTAVVTLEPCNHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAA 121 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ + A+LT R + K A + D A S IT S+ Sbjct: 122 GTAVESGLLADQAAAVNEAWLTSMRFGRPFVLWKYAATLDGRSAAADGTSRWITSAESRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231 VH LRA+SDA++VG GT+ ADDP L R NG ++ P+R++LD ++ Sbjct: 182 DVHRLRAESDAVVVGSGTLRADDPHLAVRGASGSNGASGSNGARQ--PLRVVLDSKATIA 239 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTS 289 D++++ AP +I D P + LA + + I D+ LL L GRG+ S Sbjct: 240 PDARVLDG--TAPTLIAVAEDAPAVRLAGAETVRLPRAISGPGLDIPALLGELHGRGIRS 297 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +L+EGG +A +F+ +R VD ++ Y + ++G G Sbjct: 298 VLLEGGPTLAGAFLAARAVDKVVGYLAPALLGAG 331 >gi|145628121|ref|ZP_01783922.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 22.1-21] gi|144979896|gb|EDJ89555.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 22.1-21] Length = 339 Score = 182 bits (461), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 16/302 (5%) Query: 35 IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 I K+G ++G G G PHAE AL +AGE A+GATAYVTLEPCSHYGR+PPCA +IE Sbjct: 3 IGKNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCSHYGRTPPCALGLIE 62 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 G+ +V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + Sbjct: 63 AGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQ 122 Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 LK+A+S D MA S ITG +++ V +RA+S A+L TV+ADDP L R + Sbjct: 123 LKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDE 182 Query: 214 LQEH-----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 E+ P+R+ILD ++ K+ T +PV +V+ +P F Sbjct: 183 FPENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFLTH--SPVWLVS--SEPRDLTGFPD 238 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 239 FCEQIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGD 298 Query: 323 GG 324 Sbjct: 299 NA 300 >gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma proteobacterium HTCC2143] gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma proteobacterium HTCC2143] Length = 370 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 178/335 (53%), Gaps = 18/335 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M A+ + + S NP V C+IV++G +IGRG G HAEV A+ +AG Sbjct: 3 DADYMQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAGN- 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AT YVTLEPCSH GR+PPC+ +I + RVVV + DP+ V+G G+ L Q GI+V Sbjct: 62 VEDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVV 121 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ S+ + Y+ R + +K+A+S D MA S ITG +++ V Sbjct: 122 ELGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQ 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQ--------EHSPMRIILDPHFKLSLDSK 235 LRA+S ++ G+ T++ADD LT R + GL+ E P+R++LD + +L +K Sbjct: 182 LRARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAK 241 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 I+ +II+T ++ V A +++C + DL +L L V +L Sbjct: 242 ILSQP--GRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEIL 299 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 VE GA ++ + + LVD +Y + ++G P Sbjct: 300 VEAGATLSGALAEAGLVDHYTVYMAPTLLGNTARP 334 >gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Methylophilales bacterium HTCC2181] gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Methylophilales bacterium HTCC2181] Length = 363 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 108/323 (33%), Positives = 170/323 (52%), Gaps = 9/323 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM+ A+ ++ +G T NP V + VKD +VIG G A G HAEV AL+EAG A+ Sbjct: 8 EFMALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEAGAGAK 67 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G+T Y+TLEPC H G++PPC I+ G+ +VVV DP+ V+G+GL L GI +V+ Sbjct: 68 GSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGIEVVE 127 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + + + +R + ++ KIA S D +A S IT S+ V R Sbjct: 128 DVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDVQQWR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A++ AIL G+GT+ D+P L R N + P R+I D H + +++I+K +I+ Sbjct: 188 ARACAILTGVGTIHKDNPRLNVR-NLDESDQPFRVIADTHLSIDPEAQILKQ---KNIIL 243 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + ND A + + +I + DL+ L+ L +LVE G + + Sbjct: 244 MFCNDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLNGQLL 303 Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326 LVD +I+Y++ I++G P Sbjct: 304 ELGLVDELIIYQAPIIMGGNANP 326 >gi|116623314|ref|YP_825470.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Solibacter usitatus Ellin6076] gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Solibacter usitatus Ellin6076] Length = 369 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/322 (36%), Positives = 165/322 (51%), Gaps = 14/322 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL +R L S NP V +IV+DG V+GRG Y G HAE+ AL +AGE+ARG Sbjct: 5 YMREALDLARKGRSLASPNPLVGAVIVRDGKVVGRGFHTYAGLHHAEIIALAQAGEQARG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---IV 126 A Y+ LEPCSH GR+PPC +I GI RVV + DP+ V+G+G L + GI + Sbjct: 65 AEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEVVMA 124 Query: 127 DRMMESEGKI---FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 D GK+ FLH LT R +TLK A++ D I IT ++ V Sbjct: 125 DEFAAEAGKLNEPFLHFMLT----GRPLVTLKTAITLDGKISAPDDNRGWITSERARAHV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR DAIL GIGTVLADD L+ R + +RI++D +L LDSK+ ++A Sbjct: 181 QELRHDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIVMDSQLRLPLDSKMARSANGD 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299 + I T + I ++ D DL+ ++ L SL++E G+ + Sbjct: 241 VLAITTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIVEWLGRHRYLSLMIEAGSKLN 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +VD + Y ++G Sbjct: 301 WSALEGNVVDRVFFYYGPKILG 322 >gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158] gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158] Length = 373 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDIDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGHDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D +L LD+++++ Sbjct: 183 RADGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLIDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D A A + I+ DL +L+ L RG+ L Sbjct: 241 G---APLLIFCGRLDAGSEARANALEARGAEIVSLANAHGKVDLPAMLSALGARGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6] gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6] Length = 368 Score = 182 bits (461), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 117/334 (35%), Positives = 182/334 (54%), Gaps = 24/334 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ A Sbjct: 5 TAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + G Sbjct: 65 GDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 125 IEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQARRD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RAQS AIL TVLAD+ L R + L Q P R++LD +LS Sbjct: 185 VQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELS 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSL 290 + K+ +T +I+ + D P A ++ I DL +L L + + L Sbjct: 245 PELKLYQTE-GERLIVGPKGDLP----APLDEHGQI------DLPQLFAQLSQTQLINHL 293 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A I +LVD +I+Y + ++G G Sbjct: 294 WVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDG 327 >gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Prosthecochloris vibrioformis DSM 265] gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium phaeovibrioides DSM 265] Length = 357 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 168/314 (53%), Gaps = 9/314 (2%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATA 72 L +R G S NP V +IV DG V+G G G PHAEV A+ G+ A R +T Sbjct: 5 LELARQGAGAVSPNPMVGSVIVCDGEVVGEGYHEAFGGPHAEVNAIASVGDGAVLRRSTL 64 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131 YV LEPCSH+G++PPCA IIE GIRRVV+ DP+ +V+GRG+ L G+ +++ ++E Sbjct: 65 YVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEVLEGVLE 124 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 +E K A++T E R + LK+A + D I A S ITG ++ +VH LR D Sbjct: 125 AESKRLNEAFMTSHAEGRPFVALKLAETLDGRIATADGQSKWITGDAARLEVHRLRCSYD 184 Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 A+L G T+ AD LT R +P+R++LDP LS D+ + + Sbjct: 185 AVLSGAATIRADGSRLTVRH--CAGRNPLRVVLDPSLSLSPDAPVFGDEAKTLLFASQSM 242 Query: 252 DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + AL + + +++ + DL+ +L L R V S+LVE G ++ S RL Sbjct: 243 EGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHRRQVLSVLVESGGRLSASLARERL 302 Query: 308 VDSIILYRSQIVIG 321 +D + ++ + + G Sbjct: 303 LDKLYMFIAPKLFG 316 >gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae COH1] gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae COH1] Length = 362 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 179/316 (56%), Gaps = 7/316 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+ Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ + Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E ++ K+ + LK A++ D I S I+ S+ V LR + Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I T Sbjct: 181 CSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + + Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALEA 298 Query: 306 RLVDSIILYRSQIVIG 321 +V+ +I++ + +IG Sbjct: 299 GIVNRLIVFIAPKIIG 314 >gi|261253738|ref|ZP_05946311.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio orientalis CIP 102891] gi|260937129|gb|EEX93118.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio orientalis CIP 102891] Length = 368 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 182/337 (54%), Gaps = 29/337 (8%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ + D MS A+ ++ + T+ NP+V C+IV+ ++G G G PHAEV A Sbjct: 1 MPLFTPQDFTMMSRAIELAKGGIYTTAPNPNVGCVIVQGDEIVGEGFHYRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AG+ A GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG+Q L Sbjct: 61 LRMAGDRAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPKVAGRGIQML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ ++E + + A++ + + LK+A S D +A S IT Sbjct: 121 RDAGITVEVGLLEQQAESLNPAFIKQMKTGMPFVQLKMAASIDGQTALANGQSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQE-------HSPMRIILDPH 227 ++ V RA+S AIL TV+ D+ L R + LQE P+R+ILD + Sbjct: 181 ARQDVQKYRAKSGAILSTSKTVIEDNASLNVRWDDLPLSLQEAYSQQELRQPVRVILDRN 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 +L+ D K++ T IIV E D P+L + +I DL + L + Sbjct: 241 HQLTSDLKLMSTE--GERIIVAEGQDLEPIL------NDEQLI-----DLAATFSALAKQ 287 Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + L VE GA +A S I + LVD +ILY + ++G Sbjct: 288 HHINHLWVEAGATLASSLIKANLVDELILYLAPKIMG 324 >gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 369 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 171/320 (53%), Gaps = 11/320 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ L Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIF 238 Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + A A R + I+ + R DL +L L RG+ L VE G + S Sbjct: 239 CGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGS 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + R VD +++Y + ++G Sbjct: 299 LLRERCVDELLVYLAPSLLG 318 >gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 18RS21] gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 18RS21] Length = 362 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/316 (35%), Positives = 179/316 (56%), Gaps = 7/316 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+ Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ V+ + Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E ++ K+ + LK A++ D I S I+ S+ V LR + Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I T Sbjct: 181 CSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + + Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALKA 298 Query: 306 RLVDSIILYRSQIVIG 321 +V+ +I++ + +IG Sbjct: 299 GIVNRLIVFIAPKIIG 314 >gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Vibrio sinaloensis DSM 21326] gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Vibrio sinaloensis DSM 21326] Length = 368 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/331 (34%), Positives = 178/331 (53%), Gaps = 24/331 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D + MS A+ ++ V T+ NP+V C+I ++ V+G G G PHAEV AL A Sbjct: 5 SSIDFQMMSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRMA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ DP+ +V+GRG++ L G Sbjct: 65 GEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E E ++ R ++ LK+A S D +A S IT ++ Sbjct: 125 IEVEVGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RA+S AIL TV+ D+ L R + L E P R+ILD KL+ Sbjct: 185 VQQWRARSGAILSTSKTVIEDNASLNVRWSELPESIQQRYSQTDLRQPTRVILDRQNKLT 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290 D K+ + ++V+E+ + ++L +++ DL+ L L + + + Sbjct: 245 PDLKLFHSP--GERLVVSEHGEVAMSLNEQQQ---------IDLEATLACLAQQHNINHV 293 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE GA +A S I +LVD +ILY + ++G Sbjct: 294 WVEAGATLASSLIREQLVDELILYFAPKLMG 324 >gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521] gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521] gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/324 (34%), Positives = 170/324 (52%), Gaps = 12/324 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + VG+ + NP V +IVKD VIG G G HAE A++ A E Sbjct: 1 MDEFYMKRALELAIKGVGMVNPNPMVGAVIVKDNKVIGEGFHEKYGHAHAERNAVKNAVE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GAT YVTLEPC+HYG++PPC +IE +R+VV+ + DP+ V+G+ ++ L + I Sbjct: 61 DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E E + ++ K+ + +K +S D I +G S IT S+ H Sbjct: 121 VKVGVKEKECRKLNEVFIKYITTKKPFVIMKAGISIDGKIATSGGESKWITSERSRLHSH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241 LR + I+VGI TVL+DDP LT R EH P+RII+D K+ +SK+IK Sbjct: 181 ELRNRMSGIMVGINTVLSDDPSLTYR----GEHKGKDPLRIIIDSTLKVPFESKVIKYNN 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 ++ EN D + K + +I + DL++++ L + S+L+EGG Sbjct: 237 NNTIVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVVERLGKDKIDSILLEGGGT 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 + S + +VD + Y + +IG Sbjct: 297 LNFSALKEGIVDKVRFYIAPKIIG 320 >gi|282866177|ref|ZP_06275224.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE] gi|282558961|gb|EFB64516.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE] Length = 366 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 182/332 (54%), Gaps = 23/332 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+++ G G G G PHAE+ AL E Sbjct: 3 TTADITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALRE 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARG TAYVTLEPC+H GR+ PCAQ +++ GIRRVV V DP+ + +G G L + Sbjct: 63 AGERARGGTAYVTLEPCNHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATG-GADTLRAE 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V++ ++ E + A+LT R ++ K A + D + A S IT S+ Sbjct: 122 GVQVEQGLLADEAETGNTAWLTSVRLGRPYVLWKYAATLDGRVAAADATSRWITSAESRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDP-HFKLSLDSKIIKT 239 VH LRA++DA++VG GT ADDP+L R ++G + P+R+++D + ++++ Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPQLGVRGIDGAVQ--PLRVVVDTGATAVKPGARVLDG 239 Query: 240 ALLAPVIIVTEND--------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + AP ++ D D VL L + D+ LL L RGV S+L Sbjct: 240 S--APTLVAVAEDADASHLPKDAVLRLPRAADGRGL------DVPALLAALHARGVRSVL 291 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +EGG +A SF+ + VD+++ Y + +++G G Sbjct: 292 LEGGPVLAGSFVAAGTVDTVVGYLAPVLLGAG 323 >gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] Length = 361 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/360 (32%), Positives = 195/360 (54%), Gaps = 12/360 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL AGE+ Sbjct: 4 DVFYMKLAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALHMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA YVTLEPCSH+G++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI V Sbjct: 64 AEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGIEV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + + L+ ++ ++ LK A+S D I A S ITG ++ +V Sbjct: 124 DEGICKQEADRLNVPFFHFIQSDLPYVILKSAISLDGKIATAQLESKWITGTEARQEVQQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++DA++ G+ T++ DD L + + + P+R+ILD ++ L +K + T A Sbjct: 184 LRQEADAVITGVETIIQDDAGLIVKDSIASQ--PIRVILDSTLRIPLHAKCL-TDRRAET 240 Query: 246 IIVTE---NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T + L + ++ + + R D+ +L +L R V S+LVE G V+ S Sbjct: 241 IICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDIHDVLRMLKERSVMSVLVEAGGNVSAS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ + LV+ ++Y + ++IG P+ E ++K +R +DV +GK++ + Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKLKEAIRP----ADVEYSMVGKDIKM 356 >gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O55:H7 str. USDA 5905] Length = 361 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 188/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D M S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L Q H P+RI++D +++ + I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSREWPETVRTLLIPEHKGHL------DLVVLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|260767835|ref|ZP_05876770.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio furnissii CIP 102972] gi|260617344|gb|EEX42528.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio furnissii CIP 102972] Length = 369 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/338 (34%), Positives = 176/338 (52%), Gaps = 24/338 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V ++E++ A++ R + LK+A S D +A S IT Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227 ++ V RAQ+ A+L TVLAD+ LT R L H P+R ILD Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286 +L + + T + V+ V D V +N L+++L L Sbjct: 241 HQLHRELALYATD--SAVLRVANQDADVCVALDEHGQLN--------LREVLGALAKHHN 290 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + VE GA +A S + LVD +++Y + ++G G Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDG 328 >gi|93007294|ref|YP_581731.1| riboflavin biosynthesis protein RibD [Psychrobacter cryohalolentis K5] gi|92394972|gb|ABE76247.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter cryohalolentis K5] Length = 370 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 117/323 (36%), Positives = 175/323 (54%), Gaps = 28/323 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ ++ + NP+V C+IV+ V+G+G G PHAEV AL++AG Sbjct: 31 DHYFMMLAIEQAKLGLYTARPNPAVGCVIVQAEEVVGQGFHPKAGQPHAEVFALKDAGIR 90 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q GI V Sbjct: 91 TVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVKLLEQAGIAV 150 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++++ + +L + ++ LKIA S D MA S ITG ++ V Sbjct: 151 SVGVLKTQAEALNKGFLKAMRNQMPYVRLKIATSLDGRTAMATGESKWITGPAAREDVQK 210 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIKTA 240 LRAQS AI+ G TV+ D+P+L R N L + P +ILD +L D + Sbjct: 211 LRAQSGAIITGSETVIVDNPQLNVRSNQLGIAIEEVPHPKVVILDRRGRLKHDLQSDYQL 270 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299 P + +Y +L++LL +LV +L+E GA+VA Sbjct: 271 CRRP---------------------DTLYWREDNLRELLKVLVTEYQCYDVLIEAGASVA 309 Query: 300 HSFINSRLVDSIILYRSQIVIGE 322 SF+ +LVD +I+Y++ ++G+ Sbjct: 310 GSFLQQQLVDELIVYQAPCLLGQ 332 >gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei ATCC 43380] gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei ATCC 43380] Length = 369 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 120/327 (36%), Positives = 177/327 (54%), Gaps = 14/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATA+VTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 64 AQGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 NHGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L + P+RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+ + P + D A ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVTQQD--GPCWLARVEADTQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + + +VD +ILY + ++G Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLG 328 >gi|228475866|ref|ZP_04060576.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119] gi|314936136|ref|ZP_07843483.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp. hominis C80] gi|228270021|gb|EEK11491.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119] gi|313654755|gb|EFS18500.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp. hominis C80] Length = 347 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 109/314 (34%), Positives = 164/314 (52%), Gaps = 9/314 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 + FM A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A ++A Sbjct: 2 SEFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDKA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G T Y++LEPC+HYG +PPC IIE G+ +V+ V D +S G L + GI V+ Sbjct: 62 KGGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAV--KDTTLSSEGDIILEKAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 E + + K IT+K++ S D S IT K V+ LR Sbjct: 120 YQYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA+L G GT+ AD+P+ T R+ + P+RIIL ++ +I L+ + I Sbjct: 180 HTHDAVLTGNGTIEADNPQYTTRIQ--EGKHPIRIILSKRGQIDYSKQIFHDQ-LSEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L +I IIY + +LK +L+ + RGV LLVE G + F+ S Sbjct: 237 YTENHE----LKSPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNY 292 Query: 308 VDSIILYRSQIVIG 321 +D +I+Y + +IG Sbjct: 293 LDHLIIYYAPKIIG 306 >gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP18-BS74] gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1873-00] gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae P1031] gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 670-6B] gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP18-BS74] gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1873-00] gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae P1031] gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 670-6B] gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA17545] gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA47368] Length = 366 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|223043509|ref|ZP_03613554.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14] gi|222442997|gb|EEE49097.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14] Length = 349 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 168/317 (52%), Gaps = 7/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE+A Sbjct: 2 SRFMNYAIQLAKMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGEDA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+ Sbjct: 62 KDATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + +T+K++ S D S IT K V+ LR Sbjct: 120 FQFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G T+ ADDP T R+ + P+R+IL ++ + ++ +P+ I Sbjct: 180 HEHDAVLTGRKTIDADDPLYTTRVQDGKH--PIRVILSKSGQIDFEQQLFADT-ASPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN++ L K+I II + D +L L RG+ LLVE G V F+ S Sbjct: 237 YTENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHH 294 Query: 308 VDSIILYRSQIVIGEGG 324 +D +ILY + +IG G Sbjct: 295 LDELILYLAPKLIGGSG 311 >gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425] gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425] Length = 392 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/325 (34%), Positives = 170/325 (52%), Gaps = 3/325 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M L +R G T+ NP V C+IVKDG ++G G G PHAEV AL AG+ Sbjct: 24 LDQIMMQRCLTLARQAQGQTAPNPLVGCVIVKDGEIVGEGFHPKAGEPHAEVFALRAAGD 83 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YV LEPC+HYGR+PPC++ +++ GI RVVV + DPD RVSG G+ L GI Sbjct: 84 RAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGIE 143 Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +E + A++ R R LK A++ D I A S IT ++ +VH Sbjct: 144 VTVGVEEMACRDLNEAFIHRITYHRPFGILKYAMTLDGKIATAKGHSAWITDAAARTEVH 203 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA D ++VG TV D+P+LT L+ ++ +P+RI++ L + + +T A Sbjct: 204 RLRAGCDGVIVGGNTVRRDNPQLT--LHEVEGRNPLRIVMSRSLDLPSQAHLWQTQAAAT 261 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +++ + A + + + ++ D ++ L RG+ ++L E G +A I Sbjct: 262 LVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYDRGLLAVLWECGGRLAARAIA 321 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL 329 V + + + +IG PSP+ Sbjct: 322 EGAVQKVWAFIAPKIIGGDQAPSPV 346 >gi|257453179|ref|ZP_05618478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. 3_1_5R] gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 3_1_5R] gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 3_1_5R] Length = 359 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 179/326 (54%), Gaps = 18/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V+G+G+ + GI V Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGIEV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+E + +L K + LK ++ D + S IT I++ +V Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRNFQSKWITNEIAREKVQK 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VG+ TV+ D+P L R+ NG P RII+DP+ ++ L SK++ Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHRHDKKT 239 Query: 245 VIIVTENDDPVLALAFRKKN------INIIYCDCRDLK-KLLTILVGR-GVTSLLVEGGA 296 VII + L +KK I+ + R + I +G+ G+ S+L+EGG Sbjct: 240 VIITS-----FLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGG 294 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 + S ++D ++ + ++G+ Sbjct: 295 QLISSAFREDVIDGGEIFIAPKILGD 320 >gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Trichodesmium erythraeum IMS101] gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Trichodesmium erythraeum IMS101] Length = 374 Score = 181 bits (459), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 175/327 (53%), Gaps = 3/327 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D M+ L +R +G T+ NP V C+I+K+G +IG G G PHAEV AL EA Sbjct: 11 NQLDPLIMAHCLELARRALGNTAPNPLVGCVIIKNGQIIGEGFHPGAGYPHAEVFALTEA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ARGATAYV LEPC+HYGR+PPC +I G+ RVV+ + DP+ V+G G+ L G Sbjct: 71 GEKARGATAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQDAG 130 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V ++E+E + A++ R + LK A++ D I S +T ++++ Sbjct: 131 IEVVVGVLEAECRELNEAFIHRMLYHCPFGILKYAMTLDGKIATTTGHSAWVTSQEARSE 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA SDA+++G TV D+P LT R Q ++P+R+++ L ++ + + Sbjct: 191 VHKLRAISDAVIIGGNTVRRDNPFLTSR--STQANNPLRVVMSRSLDLPTEANLWDVSEA 248 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ + + R+K + ++ +++ L RG S+L E G +A Sbjct: 249 QTLVFTEIDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYDRGFLSVLWECGGTLAARA 308 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329 + V I + + +IG P+P+ Sbjct: 309 MADGAVQKIWAFIAPKIIGGEIAPTPV 335 >gi|170741291|ref|YP_001769946.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46] gi|168195565|gb|ACA17512.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46] Length = 398 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 143/364 (39%), Positives = 194/364 (53%), Gaps = 14/364 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQA 59 +S D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE A Sbjct: 20 ASLDRRYMRLALALGRRHLGRTWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERVA 79 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L EAGE ARGAT YVTLEPCSH+GR+ PCA ++ G+ RVV ++DPD RV+GRG L Sbjct: 80 LAEAGEAARGATLYVTLEPCSHHGRTSPCADAVLAAGVARVVSAMNDPDPRVAGRGHGRL 139 Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V +E HA ++ R R + LK+A + D G G + ITG + Sbjct: 140 RAGGVAVTVGPCAEEAARDHAGHVMRVTTGRPALCLKLARTADGFA-AGGAGRLLITGAL 198 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + +VH LRA SDAILVGIGT LADDP LT RL GL + SP+ ++LDP +L +++++ Sbjct: 199 ANAEVHRLRAHSDAILVGIGTALADDPALTVRLPGLGDRSPLPVVLDPQLQLPPGARLLR 258 Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYC----DCR-DLKKLLTILVGRGVTSLLV 292 A +I+ P A A R+ ++ D R DL L L RG+T + Sbjct: 259 PGGRAQTLILAGAAAPPAAERALREAGAEVLRLPAGPDGRPDLAASLRALGARGITRVFC 318 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEKNFMCVRRDYFGSDV 350 EGG +A + + LVDS +L +G+ G P+ P L V G D Sbjct: 319 EGGPTLADALAAADLVDSCLLLTGAAPLGQPGKPAIGPALAARLAGGLRRVAERPLGPDR 378 Query: 351 CLEY 354 Y Sbjct: 379 LTTY 382 >gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91] Length = 369 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/320 (35%), Positives = 171/320 (53%), Gaps = 11/320 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ L Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVF 238 Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + A A R + I+ + R DL +L L RG+ L VE G + S Sbjct: 239 CGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGS 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + R VD +++Y + ++G Sbjct: 299 LLRERCVDELLVYLAPSLLG 318 >gi|310657724|ref|YP_003935445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Clostridium sticklandii DSM 519] gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Clostridium sticklandii] Length = 382 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 14/333 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM AL + G + NP V +IVKDG VIG G G HAE++A+ A E+ Sbjct: 21 DEKFMKLALSLAEKGRGYVNPNPLVGAVIVKDGKVIGEGYHTAFGKSHAEIEAINSATED 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 + AT YVTLEPC H G++PPC + II+ + RVVV DP+ VSG G++ L Q I Sbjct: 81 IKSATMYVTLEPCCHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQSNIEI 140 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 +++ M + + ++F+H Y+T + LK A+S D I S IT S+ Sbjct: 141 TVGVLEEMAKIQNEVFIH-YMTTNL---PFTILKYAMSLDGKIACHTGDSKWITSEKSRT 196 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR+ A++ GIGT+L+DD L RL + P RI++D ++SLD+KII Sbjct: 197 DVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHRIVVDSAARISLDAKIINLDS 256 Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + I VTE II + DL++L L G+ S+L+E G Sbjct: 257 KSDTYIAVTEAASDGKLRKLEDYGAKIIMTKSKDGKVDLEELWKELGFLGMDSILIEAGE 316 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 ++ + + ++LV+ I Y + +IG SP+ Sbjct: 317 QLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPI 349 >gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum WM1] gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum WM1] Length = 368 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 123/359 (34%), Positives = 191/359 (53%), Gaps = 29/359 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+R ++ GL + NP V ++VK+G +IG G G HAE A+ E Sbjct: 3 DMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKEGRIIGEGYYERYGALHAERNAILNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G T YVTLEPC H+G++PPC + I++ GIRRVV+ DP+ V G+G++ L ++GI + Sbjct: 63 PEGTTLYVTLEPCCHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQGIEV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ +++ E ++F H T + ++ +K A++ D S ITG ++ Sbjct: 123 VEDVLKEECDKLNEVFFHFIQT----GKPYVVMKYAMTMDGKTAAYTGASKWITGEDARR 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH R + A++VGIGTVLADDP LTCRL NG +P+RII D LDS+I+ TA Sbjct: 179 RVHEDRRRYSAVMVGIGTVLADDPLLTCRLENG---RNPLRIICDTQLHTPLDSRIVLTA 235 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 P +I T + + + K I+ + DL +L+ L + S+L+EGG Sbjct: 236 SKVPTVIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARLMAKLGEEKIDSVLLEGGG 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG---------GIPSPLEEGYLEKN--FMCVRRD 344 + S + + +V+ + Y + ++G G+PSP E GY N C+ D Sbjct: 296 ILNWSALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSP-EAGYFLTNSTITCLGED 353 >gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305] gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305] Length = 355 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 178/328 (54%), Gaps = 15/328 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+ + + RGA Sbjct: 1 MARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILNSNADLRGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L GI +V Sbjct: 61 TAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEVVTDF 120 Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 M E IF H T KR ++ LK A++ D I + S ITG +++ +V Sbjct: 121 MREECDRLNPIFFHYIQT----KRPYVLLKYAMTADGKIATSSGESKWITGELARAKVQE 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R Q AI+VGI TVLAD+P L R+ ++ P+RI+ D + LD ++++TA Sbjct: 177 TRHQYSAIMVGIETVLADNPMLNSRMPNAKQ--PVRIVCDSSLRTPLDCQLVQTAKEYRT 234 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T +DD F+ + I+ C + DL+ LL L + SLL+EGG+++ S Sbjct: 235 IIATVSDDLQKIAQFQPLGVEILVCKVKDKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + +V+ + Y + ++G +P+ Sbjct: 295 ALQVGIVNRVHCYIAPKLVGGATAKTPI 322 >gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797] gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797] Length = 377 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 187/347 (53%), Gaps = 15/347 (4%) Query: 2 PVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQ 58 P+ F + M AL +R G NP+V +IV + +IG G G PHAE+ Sbjct: 3 PIRVFSSPEEVMHRALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIH 62 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL AGE+++G T YVTLEPC H G++ PC+Q +I GI++VV+ + DP V G G++ Sbjct: 63 ALNMAGEQSQGKTIYVTLEPCCHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEE 122 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L Q GI V+ ++ESE + + ++ R + I K A++ D I S I+ Sbjct: 123 LKQAGIEVEVGLLESEAQALVRPFVKRVTQGLPWIHAKWAMTLDGKIATRTGHSQWISNP 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S+ +VH LR + DAI+VG T ADDP LT R G + P RI++D +LS+ S+++ Sbjct: 183 RSRERVHELRGRMDAIMVGQRTATADDPLLTARPPG--KRIPARIVIDSQARLSVQSQLV 240 Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINII-YCDCR-------DLKKLLTILVGRGVT 288 +T APVI+V + L + + ++ + +C +L+ + L R +T Sbjct: 241 QTVAEAPVIVVAHPSASQKKILQLEQAGVEVLQFSNCTSENESQPNLRLCMQELARRDMT 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 ++LVEGG ++ S + RL+D + ++ + +IG +P+ LE Sbjct: 301 NILVEGGGSLLGSCFDQRLIDEVHVFIAPKIIGGAEAVTPIAGKGLE 347 >gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD [Candidatus Kuenenia stuttgartiensis] Length = 367 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 196/367 (53%), Gaps = 18/367 (4%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP + D +M+ AL + G+ NP V +IVK+ ++G+G G HAE+ A Sbjct: 1 MPLMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNNEIVGKGYHKNYGGAHAEIHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + E G +GAT YVT+EPC+HYG++ PCA II GI +VV DP+ SG+G++ L Sbjct: 61 INEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQL 120 Query: 120 SQKGIIVDRM--MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITG 176 GI V RM ME + K L+A + ++K +I +K A+S D I S IT Sbjct: 121 QAAGITV-RMGVMEDQAK-KLNAPFFKLIQKGMPYIIVKWAMSIDGKIATVTGDSKWITS 178 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 S+ VH LR+Q D ++VGI TVL DDP LTCR NG + +P RII+D L L S + Sbjct: 179 EESRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNGGR--NPKRIIIDSRASLPLTSAL 236 Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 I+T + +II + P + R+ +I D DLK+L L +T+++ Sbjct: 237 IRTVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVDLKELFLKLGSMRLTNIM 296 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346 VEGG+ + S + RL D II++ + I+IG G SP+ +E VR F Sbjct: 297 VEGGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGVENVCDALKIREVRHYRF 356 Query: 347 GSDVCLE 353 D+ +E Sbjct: 357 SDDIVVE 363 >gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42] gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42] Length = 371 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 20/329 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A+ +R G T +NP V ++VK+G ++G G G HAEV A+ AG A+G Sbjct: 5 YMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGRHAKG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ II+ GI+RV + V DP+ V+G+G+ L GI Sbjct: 65 ADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKTG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ + E K+FLH T ++TLK A S D S IT ++ Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG GTV AD+P LTCRL + P+R+ILD + + ++ T AP Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTIPETANVL-TDGAAP 238 Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I T + D + AL + + + D + ++L+IL G+ S+ VEGGA+V Sbjct: 239 TWIFTAKGADVQKKDRLTALGIK---VIPLETDRIHVPEVLSILAENGIMSVYVEGGASV 295 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ + Y + +IG PS Sbjct: 296 HGSFVKEDCFQELHFYFAPKLIGGTLAPS 324 >gi|119502840|ref|ZP_01624925.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2080] gi|119461186|gb|EAW42276.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2080] Length = 359 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 16/327 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R + NP V C+IV D ++G+G T G HAE+ AL A +GA Sbjct: 1 MEQALAEARKGRFWATPNPHVGCVIVSDNKILGKGFTQPVGGAHAEIMALG-ACASPQGA 59 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYVTLEPC+H GR+ PC + +I GI RVV ++DP+ VSG+G L GI V + + Sbjct: 60 TAYVTLEPCAHQGRTGPCVEALISAGIGRVVGALEDPNPSVSGKGYDRLRAAGIAVTQGV 119 Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 SE ++ L +L R + LK+A S D MA S ITG +++ V RA Sbjct: 120 YSEAARVELAGFLLRMERGWGRVRLKLACSLDGRTAMASGESQWITGALARQDVQRQRAA 179 Query: 190 SDAILVGIGTVLADDPELTCRLN--GLQ--------EHSPMRIILDPHFKLSLDSKIIKT 239 S I+ GIGTVLADD LT R + GL+ P R++LD + + +++++ + Sbjct: 180 SSVIITGIGTVLADDCSLTVRSDELGLRGEELTRALHRPPTRVVLDSNARTPGEARVLSS 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP ++VT N+ V A A K + DL +L L +G +L+E G ++A Sbjct: 240 N--APTLVVTANEKQVPAGALHK--TAPVTEAGLDLGDVLESLGSQGANEILIESGPSLA 295 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 +F+ + LVD +++Y++ +++G P Sbjct: 296 AAFLKADLVDELLIYQAPVLLGSSARP 322 >gi|87200870|ref|YP_498127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium aromaticivorans DSM 12444] gi|87136551|gb|ABD27293.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium aromaticivorans DSM 12444] Length = 323 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 97/222 (43%), Positives = 133/222 (59%), Gaps = 1/222 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D R++ AA L+ NP+V +IV DG+V+GRG T GG PHAE AL A Sbjct: 3 AADDLRWLDAAASLGARGRPLSRPNPAVGAVIVNDGVVVGRGWTQAGGRPHAEAGALMAA 62 Query: 64 GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G+ A+GAT YVTLEPC+H R P C +++ G+ RVV+ ++DPD R +G G+ L Sbjct: 63 GDAAQGATLYVTLEPCAHASERGPSCTSLVLKSGLARVVIGIEDPDPRTAGGGIAALRSA 122 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 GI D + + + L YL R R H+TLK+A S D I +A S ITG ++ Sbjct: 123 GIAADVVPSAAARASLVGYLVRTATGRPHVTLKLATSLDGRIALADGTSKWITGPEARAH 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224 H+ RA++DAILVG GT+ AD P L RL GL+ SP R++L Sbjct: 183 CHVERARADAILVGGGTLRADAPRLDVRLPGLEARSPKRMVL 224 >gi|269962351|ref|ZP_06176701.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi 1DA3] gi|269832847|gb|EEZ86956.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi 1DA3] Length = 374 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 119/331 (35%), Positives = 174/331 (52%), Gaps = 24/331 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ AG++ Sbjct: 14 DFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMAGDK 73 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L G+ V Sbjct: 74 AEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDAGVEV 133 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E ++ ++ LK+A S D ++ S IT ++ V Sbjct: 134 QVGLLENEAIELNKGFIKFMQTGMPYVQLKMAASLDGQSALSNGQSQWITSPKARQDVQR 193 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPM-------RIILDPHFKLSLDS 234 RA S IL TV+ D+ L R N ++ H P R+ILD +LS D Sbjct: 194 YRALSGGILSTSKTVIDDNASLNVRWDDLPNSVKAHYPQDEVRQPPRVILDRQSQLSDDL 253 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVE 293 K+ T IIV++ D L KN + DL L + G + L VE Sbjct: 254 KLFNTD--GERIIVSQGGDIAPEL---DKNGQV------DLAATLQAVASGTHINHLWVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A S I + LVD +I+Y + ++G G Sbjct: 303 AGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353] gi|224954496|gb|EEG35705.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353] Length = 411 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/405 (30%), Positives = 192/405 (47%), Gaps = 59/405 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 + ++M A+ ++ G + NP V +IVKDG +IG G G HAE A+ A Sbjct: 3 EEKYMRRAIELAKKGSGHVNPNPLVGAVIVKDGEIIGEGYHECYGQLHAERNAIANARKR 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G G+T YVTLEPC HYG++PPC + IIE I RVVV DDP+ VSG+G + L +KG Sbjct: 63 GNNIEGSTIYVTLEPCCHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFKLLREKG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ ++ E H + ++ +K A++ D I S +TG S+ Sbjct: 123 IEVIPHFLKEECDAMNHVFFHYISTGTPYVAMKYAMTMDGKIACYTGDSKWVTGEESRAH 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V LR I+ GIGTVLADDP L+CR+ G ++ P+RII D H ++ +DS++++TA Sbjct: 183 VQTLRNHYKGIMAGIGTVLADDPMLSCRIEGGRD--PVRIIADSHLRIPMDSQLVRTAKQ 240 Query: 243 APVIIVTEND-DPVLALAFRKKNINII--------------------YCD---------- 271 P+I+ D D A+ +K + ++ Y D Sbjct: 241 QPLIVACLPDADETKAVQLEEKGVEVLRIPGIAVNDFSGSSSDSVLKYKDRLLADNLADN 300 Query: 272 --CRD---------------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 R+ L L+ L R + +L+EGG + S + + +V + Y Sbjct: 301 NISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGILLEGGGQLNESALQAGIVQRVYCY 360 Query: 315 RSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 + + G +P+E L K +F + FG D+ LEY Sbjct: 361 IAPKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQEFGQDILLEY 405 >gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis TAC125] gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis TAC125] Length = 382 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 175/328 (53%), Gaps = 12/328 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + +D +M+ A+ ++ T+ NP+V C++VK+ ++G G G HAEV AL A Sbjct: 8 NQYDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNALAMA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS G Sbjct: 68 GSKAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDAG 127 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E++ + + R ++T K+A S D + S ITG ++ Sbjct: 128 IEVAYGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDS 234 V L RAQS AIL G TVL DD +L R N L + P+R+I+D +L+ + Sbjct: 188 VQLYRAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPNL 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 + A+ + +II T D K+I + + + DL +L L ++ +E Sbjct: 248 ALF--AIESEIIIFTTKVDKSQHWPHFVKHIVVTASNSKVDLTAVLKKLAKLQFNTVWLE 305 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A + L+D I Y + +IG Sbjct: 306 AGATLAGKMVELDLIDEFIFYLAPKLIG 333 >gi|156973476|ref|YP_001444383.1| pyrimidine deaminase [Vibrio harveyi ATCC BAA-1116] gi|156525070|gb|ABU70156.1| hypothetical protein VIBHAR_01166 [Vibrio harveyi ATCC BAA-1116] Length = 374 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 175/334 (52%), Gaps = 24/334 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ A Sbjct: 11 TSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L G Sbjct: 71 GDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDAG 130 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++ESE ++ +I LK+A S D ++ S IT ++ Sbjct: 131 VEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231 V RA S IL TV+ D+ L R L QE P R+I D +LS Sbjct: 191 VQRYRALSCGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQLS 250 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSL 290 D K+ T IIV++ D V L +N I DL L + G + L Sbjct: 251 DDLKLFNTD--GERIIVSQGSDMVPELG---ENGQI------DLAATLRNVASGYHINHL 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I + LVD +I+Y + ++G G Sbjct: 300 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC3059-06] gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Hungary19A-6] gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Hungary19A-6] gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC3059-06] Length = 366 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae OXC141] Length = 366 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 174/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans DMS010] gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans DMS010] Length = 368 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 173/330 (52%), Gaps = 29/330 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A++ + + T NP V C+IVK+ +IG G G HAEV A++ AG A G Sbjct: 7 FMARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAIQAAGHAAEG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 A YVTLEPCSH+GR+PPC +I ++RV V + DP+ VSG G+ L Q G+ V Sbjct: 67 ADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVHTD 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ ++ + + R + I K+A+S D MA S ITG ++ V LRA Sbjct: 127 ILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKLRA 186 Query: 189 QSDAILVGIGTVLADDPELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +S AI+ GIGTVLADDP L R G + P+R+++D ++ +++I++ Sbjct: 187 RSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARILQE 246 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC-------DCRDLKKLLTILVGRGVTSLLV 292 + +LA A KK N D DL L+++L R V L+V Sbjct: 247 KRV------------LLATAQDKKAPNGAESIVLPEDGDIIDLTALMSVLAQREVNELMV 294 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 E G + + + +RL+D +++Y + ++G+ Sbjct: 295 EAGGVLNGAMLKARLIDELVIYMAPKIMGD 324 >gi|330888055|gb|EGH20716.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori str. 301020] Length = 276 Score = 180 bits (457), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 101/247 (40%), Positives = 140/247 (56%), Gaps = 11/247 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L G Sbjct: 66 SELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPL 245 Query: 233 DSKIIKT 239 D+ + Sbjct: 246 DAPFFQA 252 >gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Photorhabdus luminescens subsp. laumondii TTO1] Length = 369 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/335 (36%), Positives = 180/335 (53%), Gaps = 28/335 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M+ AL +R TS NP+V C+IV DG ++G G G PHAEV AL+ AG++ Sbjct: 4 DKKYMARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIAGDK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 64 AKGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIAV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +M E + +L R +I LK+A S D +A S IT ++ V Sbjct: 124 EHGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDVQK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234 RAQ AIL TVLADDP LT R + L P+R+I+D ++S Sbjct: 184 FRAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSPQH 243 Query: 235 KIIKTA---LLAPVII----VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++I+ LA + ++EN + +L A I + DL L+ L R + Sbjct: 244 QVIQQPGYCWLARTKVDEHDLSENVEQILLPAH---GIGV------DLVSLMMQLGKRQI 294 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 ++ E GA +A + + LVD ++LY + V+G+ Sbjct: 295 NTVWTECGALLAGALLTLGLVDELVLYVAPKVLGD 329 >gi|257467357|ref|ZP_05631668.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium gonidiaformans ATCC 25563] gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium gonidiaformans ATCC 25563] gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium gonidiaformans ATCC 25563] Length = 359 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 178/326 (54%), Gaps = 18/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V G+G+ + GI V Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGIEV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+E + +L K + LK ++ D + S IT I++ +V Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRDFQSKWITNEIAREKVQQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VG+ TV+ D+P L R+ NG P RII+DP+ ++ L SK++ Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHRHDKKT 239 Query: 245 VIIVTENDDPVLALAFRKKN------INIIYCDCRDLK-KLLTILVGR-GVTSLLVEGGA 296 VII + L +KK I+ + R + I +G+ G+ S+L+EGG Sbjct: 240 VIITS-----FLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGG 294 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 + S ++D ++ + ++G+ Sbjct: 295 QLISSAFREDVIDGGEIFIAPKILGD 320 >gi|293610032|ref|ZP_06692333.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024] gi|292827264|gb|EFF85628.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024] Length = 361 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 21/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL EAGE Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFALREAGEH 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILENAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EVGICEDLASKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241 RA S A++ GI TV+ADD +L R LN + P R++LD +L L++KI+ Sbjct: 187 WRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAKIL---- 242 Query: 242 LAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297 EN + V+ + +R++ ++ +I + + LK LL L + + +LVE GA Sbjct: 243 --------ENPETVMVMGPYRQELADLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEAGAT 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324 ++ +F+ LVD +I Y + ++G+ Sbjct: 295 LSTAFLQEGLVDELISYIASTLLGKSA 321 >gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. longum JDM301] gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. longum JDM301] Length = 366 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 115/328 (35%), Positives = 174/328 (53%), Gaps = 8/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M A+ ++ G + NP V +IVKD +IG+G G HAE AL + Sbjct: 3 DARYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI V Sbjct: 63 PAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIRV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ E + + + ++ +K A++ D I S I+G S+ +VH Sbjct: 123 DVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA Sbjct: 183 LRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVRT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T DD A +R+ I+ D DL ++ L + S+L+EGG+A+ S Sbjct: 241 YIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + R+VD +Y + + G G SP+ Sbjct: 301 ALEQRIVDEAHVYIAPKIFG-GTAKSPV 327 >gi|2493562|sp|P70814|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens] Length = 371 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 172/329 (52%), Gaps = 20/329 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ A+ +R G T NP V ++VK ++G G G HAEV A+ AG A+G Sbjct: 5 YMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAKG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 A YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L + GI Sbjct: 65 ADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKTG 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ + E K+FLH T ++TLK A S D S IT ++ Sbjct: 125 LLRQQAEELNKMFLHFMRT----GLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R ILVG GTV AD+P LTCRL + P+R+ILD + + ++ T AP Sbjct: 181 QYRKSHQRILVGAGTVKADNPSLTCRLPDAVKQ-PVRVILDTKLTVPETANVL-TDGAAP 238 Query: 245 VIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I T D + AL + + + D + ++L+IL G+ S+ VEGGA+V Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIK---VFTLETDRIHIPEVLSILAENGIMSVYVEGGASV 295 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 SF+ + D + Y + I+IG PS Sbjct: 296 HGSFVKAGCFDELHFYFAPILIGGTLAPS 324 >gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245] gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245] Length = 372 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 174/343 (50%), Gaps = 17/343 (4%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEARGATAYVTLEPCS 80 G S NP V C+IV G VIG G G PHAEV A+ E R AT YV LEPCS Sbjct: 28 GAVSPNPMVGCVIVSGGQVIGEGFHRQYGGPHAEVNAVASVADRERLRNATLYVNLEPCS 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLH 139 H+G++PPC+ I+E GI RVV+ DP ++V+G+G+ L G+ +++ ++E+E + Sbjct: 88 HFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGVEVIEGVLETESERLNE 147 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A++T + R + LK+A S D I S ITG ++ +VH LR DA+L G T Sbjct: 148 AFITVHRKGRPFVALKLAQSLDGKIATVSGASKWITGEEARTEVHRLRCSFDAVLTGAAT 207 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 V+ADD LT R +P+R++LD + + + I T V D A Sbjct: 208 VIADDSRLTVR--HCAGRNPIRVVLDSRLSIPIGAGIFDTEAETVVFTALSMQDSQKARQ 265 Query: 260 FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 KK + + R DL +L L R + S+LVEGG + SF+ L D + ++ Sbjct: 266 LAKKGVAVFGVAERECGLDLAAVLERLHERRILSVLVEGGGRLGSSFVRMELFDKLYMFI 325 Query: 316 SQIVIGEGGIPS------PLEEGYLEKNFMCVRRDYFGSDVCL 352 + ++ G G+ + L E + +F R FG D+ L Sbjct: 326 APVLFGGDGLSAFAPIGITLPEQAIRLDFEPPSR--FGRDLLL 366 >gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae SP195] gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae SP195] Length = 384 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 21 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 81 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 140 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ V Sbjct: 141 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 201 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 258 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 259 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 318 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 319 ALEQQIVDELKIYIAPKIFG 338 >gi|163803478|ref|ZP_02197350.1| hypothetical protein 1103602000439_AND4_19771 [Vibrio sp. AND4] gi|159172738|gb|EDP57587.1| hypothetical protein AND4_19771 [Vibrio sp. AND4] Length = 375 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/334 (35%), Positives = 173/334 (51%), Gaps = 24/334 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ A Sbjct: 12 TSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 71 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV +DP+ +V+GRG Q L G Sbjct: 72 GDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCATEDPNPKVAGRGFQMLRDAG 131 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +++SE ++ +I LK+A S D ++ S IT ++ Sbjct: 132 VDVQVGLLQSEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RA S IL TVLAD+ L R + L + P R+I D +LS Sbjct: 192 VQRYRALSGGILSSSKTVLADNASLNVRWDDLPKSVQTQYLKQDVRQPSRVIFDRQSQLS 251 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290 D K+ T IIV + D L +N I DL L ++ + L Sbjct: 252 DDLKLFNTD--GERIIVRQGGDICPEL---DENGQI------DLAATLKVVASECHINHL 300 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I + LVD +I+Y + ++G G Sbjct: 301 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 334 >gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae NEM316] gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316] Length = 369 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 179/317 (56%), Gaps = 7/317 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G Sbjct: 7 YMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 +T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++ + V+ Sbjct: 67 STLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKECLNVEVG 126 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E ++ K+ + LK A++ D I S I+ S+ V LR Sbjct: 127 ILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQ 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AI+VGI TVLAD+P LTCR+ + + +RI+ D K+ LDS ++K+A P I Sbjct: 187 KCSAIMVGINTVLADNPRLTCRIP--KGEALVRIVCDSQLKIPLDSYLVKSAKTIPTWIA 244 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + Sbjct: 245 TCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALK 304 Query: 305 SRLVDSIILYRSQIVIG 321 + +V+ +I++ + +IG Sbjct: 305 AGIVNRLIVFIAPKIIG 321 >gi|188994131|ref|YP_001928383.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis ATCC 33277] gi|188593811|dbj|BAG32786.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis ATCC 33277] Length = 330 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 173/326 (53%), Gaps = 17/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ + Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L + Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDASV 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179 V ++ E + +LT Q + R ++TLK A S D I A V ++ ++ Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH R DAILVG T L D+P LT R +P+R++ D H L + Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 ++ P ++ TE + P + +++ + D ++++L L RG+ SLLVEGGA Sbjct: 242 SV--PTLVFTEKEQP----SGYPSSVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 + SFI+S L D + + RS I++ EG Sbjct: 296 ILRSFIDSGLYDDVRIERSTIILNEG 321 >gi|56475984|ref|YP_157573.1| riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Aromatoleum aromaticum EbN1] gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Aromatoleum aromaticum EbN1] Length = 366 Score = 180 bits (456), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 113/328 (34%), Positives = 179/328 (54%), Gaps = 11/328 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D M+ AL+ + + T+ NP V C+++K+G ++G G G PHAEV AL Sbjct: 1 MTYSEADHVAMARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARGATAYVTLEPC+H+GR+PPCA +I G+ RVV ++DP+ V+G G+ L Sbjct: 61 RAAGDTARGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLR 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V ++ S+ +++R R + LK A + D + S IT + Sbjct: 121 AAGLAVTTGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ A+L GIGTV DDP+LT R E P+R+++D + L +K+++ Sbjct: 181 RRDGHRWRARACAVLTGIGTVREDDPQLTVRAVPC-ERQPLRVLVDARLDIPLSAKLLQG 239 Query: 240 A--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294 L+A I E+ + ALA + ++ + R DL L+ L RG+ + VE Sbjct: 240 GGCLIATAI---EDCEKSAALAALGAEV-VVLPNGRGKVDLPSLMRELGDRGINEVHVEA 295 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322 G + S + VD ++LY + +++G+ Sbjct: 296 GLKLNGSLLRENCVDELLLYVAPMLVGD 323 >gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708] gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708] Length = 375 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 120/362 (33%), Positives = 188/362 (51%), Gaps = 10/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD+ M L+ +R +G TS NP V ++V+D ++G G G PHAEV AL A Sbjct: 14 SEFDSLMMQWCLQLARRALGRTSPNPLVGAVVVQDREIVGEGFHPRAGEPHAEVFALRAA 73 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GAT YV+LEPC+HYGR+PPC++ +I GI +VVV + DP+ V+G G+ L G Sbjct: 74 GEKAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLRAAG 133 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + E+ + ++ R V K+ LK A++ D I + S IT ++++ Sbjct: 134 IEVLVGVEEAACRQLNEGFIHRIVHKQPLGILKYAMTLDGKIATSSGHSAWITNPDARSE 193 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LTC + ++P+R+++ L D+++ A Sbjct: 194 VHQLRAACDAVIVGGNTVRQDNPFLTC--HQWDGNNPLRVVMSRSLNLPEDARLWNVA-E 250 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +++TE P K + +I ++ L G S+L E G +A S Sbjct: 251 APTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYELGFCSVLWECGGTLAAS 310 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 I V I+ + + +IG P+P+ + F + VC +G + CL Sbjct: 311 AIAQGAVQKILAFIAPKIIGGSHAPTPVG----DLGFTTMTEALRLEKVCWRVVGSD-CL 365 Query: 362 QE 363 E Sbjct: 366 VE 367 >gi|226226877|ref|YP_002760983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Gemmatimonas aurantiaca T-27] gi|226090068|dbj|BAH38513.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Gemmatimonas aurantiaca T-27] Length = 384 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 128/361 (35%), Positives = 186/361 (51%), Gaps = 19/361 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A+ + G + NP V ++V+DG V+G G G PHAEV AL A Sbjct: 25 DVRFMRRAIALAERGAGQVAPNPKVGAVLVRDGQVVGEGWHQQYGGPHAEVHALAAAHAV 84 Query: 67 ARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A A YV+LEPC+H+G++PPC + +I G+ RVV DP+ + +G G++ L Sbjct: 85 AANAARGATAYVSLEPCNHHGKTPPCTEALIAAGVARVVCATRDPNPKAAG-GIERLEAA 143 Query: 123 GIIVD-RMMESEGKI----FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V + E E + F HA + R +TLK+AVS D I A +TG Sbjct: 144 GIRVTVGVCEHEALVQNAPFFHAA---RGTDRPFVTLKLAVSIDGAIVDASRQRGWLTGP 200 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + VH LRA +DA+ VGIGT LADDP LT RL +P RI+ D +L LDS ++ Sbjct: 201 AAHAAVHALRADADAVAVGIGTALADDPALTVRLVEAPRVAPRRIVFDRQGRLPLDSALV 260 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +TA PV ++T PV A A + ++ + L L L GV LLVEGGA Sbjct: 261 RTAGEIPVSVITHAPRPVAANALADAGVQVL--EAAGLADALRTLWAEGVRHLLVEGGAE 318 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + + +++ LV +I++++ +++G G + + P + R FG D+ Sbjct: 319 LGSALLHAGLVHHLIIFQAPVILGAGAVSAFATFPAAVADTAPRLRVLERRVFGDDLMTR 378 Query: 354 Y 354 Y Sbjct: 379 Y 379 >gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 384 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 126/368 (34%), Positives = 189/368 (51%), Gaps = 32/368 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ A + T NP+V C+IV + ++G G G HAE+ AL+ AG+ Sbjct: 6 DLTYLNRAFNLAELGKFTTHPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKLAGKY 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G+T YVTLEPCSH+G++P CAQ +I ++ V+ DP+ VSG+G L GI V Sbjct: 66 AKGSTVYVTLEPCSHHGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNAGIKV 125 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + SE I L+ + R ITLK+ S D S IT S+ V + Sbjct: 126 KYNIMSEKSIKLNLGFFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRKDVQV 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDS 234 LRA+S AIL TV+ D+ +LT R N L +E P+RII+D K+ Sbjct: 186 LRAKSGAILSSAKTVIEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKILNSH 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVG 284 IIK + ++ + ND+ L + + II C+ DL KL+ +L Sbjct: 246 DIIKHKGII-FLVRSLNDN----LTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILLGK 300 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRR 343 + S+L+E GA ++ SF+ S L+D IILY+S ++GE G+P +L K+F + + Sbjct: 301 NEINSVLIESGANLSGSFLLSGLLDEIILYQSPKILGEKGLPL----FFLHKSFKLNLSP 356 Query: 344 DYFGSDVC 351 + SDVC Sbjct: 357 KFVISDVC 364 >gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA17570] Length = 366 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ V Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|314933920|ref|ZP_07841285.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87] gi|313654070|gb|EFS17827.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87] Length = 349 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/317 (35%), Positives = 167/317 (52%), Gaps = 7/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE A Sbjct: 2 SRFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGENA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+ Sbjct: 62 KDATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + +T+K++ S D S IT K V+ LR Sbjct: 120 FQFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G T+ ADDP T R+ + P+R+IL ++ + ++ +P+ I Sbjct: 180 HEHDAVLTGRKTIDADDPLYTTRVQDGKH--PIRVILSKSGQIDFEQQLFADT-ASPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN++ L K+I II + D +L L RG+ LLVE G V F+ S Sbjct: 237 YTENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHH 294 Query: 308 VDSIILYRSQIVIGEGG 324 +D +ILY + +IG G Sbjct: 295 LDELILYLAPKLIGGSG 311 >gi|50843212|ref|YP_056439.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes KPA171202] gi|50840814|gb|AAT83481.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes KPA171202] gi|315106176|gb|EFT78152.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL030PA1] Length = 331 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 160/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGVT-HQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G+G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGDG 294 >gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 365 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 183/327 (55%), Gaps = 11/327 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D FM+ ALR + + T+ NP V C+IV DG V+G G G HAEV AL+ A Sbjct: 3 SAADHDFMARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHALQAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSH+GR+PPC + ++ G+ RVV + DP+ +V+G GL L G Sbjct: 63 GEKAAGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++ +E ++ R R + LK+A S D + S +TG ++ Sbjct: 123 VRAECGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGL--QEHSPMRIILDPHFKLSLDSKIIKT 239 H RA++ AIL GIGTV DDP+L R + G + P+++++D +LS D+++++ Sbjct: 183 GHRWRARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLRD 242 Query: 240 A--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295 L+A ++ D ALA R + ++ DL LL L RG+ + E G Sbjct: 243 GQVLVAAALVDRAKVD---ALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE 322 A+ S +++ LVD ++LY + ++G+ Sbjct: 300 FALGGSLLDAGLVDELLLYLAPCLVGD 326 >gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii NCIMB 8052] gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii NCIMB 8052] Length = 361 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 109/321 (33%), Positives = 173/321 (53%), Gaps = 7/321 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL ++ +G + NP V +IVKD +IG G G HAE A++ A + Sbjct: 1 MDEKYMEIALELAKRGIGKVNPNPLVGAVIVKDNEIIGEGYHECYGEAHAERNAVKNATK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YVTLEPC+HYG++PPC IIE +RVV+ + DP+ VSG+ ++ L Q GI Sbjct: 61 SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E E K ++ K + LK +S D I S IT S+ Sbjct: 121 VVVGIKEKECKELNEIFIKYITSKIPFVILKSGMSIDGKIATYSGQSKWITSKESREDSQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + +I+VG+ TV+ D+PELTCR+N ++ +RII+D + ++ L+SK++ + A Sbjct: 181 HLRNRFHSIMVGVNTVIEDNPELTCRINDGKK--LIRIIVDSNLRIPLESKVLTNSDKAA 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 +++ T D R I +I +D LK+L+ + G+ S+L+EGG + Sbjct: 239 IVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVKRVGEEGIDSILIEGGGTLNF 298 Query: 301 SFINSRLVDSIILYRSQIVIG 321 S + R+VD + Y + +IG Sbjct: 299 SALEERIVDKVRFYIAPKIIG 319 >gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia xenovorans LB400] gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia xenovorans LB400] Length = 389 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 171/329 (51%), Gaps = 15/329 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++A Sbjct: 3 SQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP +T R P R+++D + +++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVREDDPRMTVRAVDTPRQ-PQRVLIDSQLDVPPEAQILAG 241 Query: 240 ALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I N D A A R + I+ DL +L +L R V L V Sbjct: 242 ---APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 E G + S + VD +++Y + ++G Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327 >gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM 17093] gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM 17093] Length = 393 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 168/318 (52%), Gaps = 14/318 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 R+MS AL + G T+ NP V C+IV+D +IG G G HAEV+AL++A G Sbjct: 14 RYMSRALELAERGRGSTAPNPMVGCVIVRDDEIIGEGWHERAGEAHAEVRALQDARSRGA 73 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 RGAT YVTLEPC+H GR+PPC + I+E G+RRVV+ DPD RV G G+ L G+ Sbjct: 74 RVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQAAGVE 133 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ +E + + T + R + K A++ D I S ITG ++ +V Sbjct: 134 VVTGVLAAEAEAQNEVFRTVHLRGRPWVLYKTAMTLDGKIATRTGRSRWITGPAARERVQ 193 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KTA 240 RA A+ VG+ TVL DDP LTCR+ G H+P +++ D + +++ + Sbjct: 194 RWRAHLSAVAVGVNTVLLDDPLLTCRVPG--GHTPHKVVFDTVARTPPTAQLFHPDPQGE 251 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGA 296 + VTE A R + ++ + R D++ L L GV +LL+EGG Sbjct: 252 AARVTLFVTERAPAARVAALRYRGAEVVVLPETRGRADVRSALAHLKEVGVQTLLLEGGG 311 Query: 297 AVAHSFINSRLVDSIILY 314 +A SF + VD + ++ Sbjct: 312 TLAWSFFEVQAVDRVAVF 329 >gi|256787680|ref|ZP_05526111.1| riboflavin-specific deaminase [Streptomyces lividans TK24] Length = 405 Score = 179 bits (455), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 186/376 (49%), Gaps = 39/376 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + VG T +NP+V C+++ +G + GV G PHAEV AL A RG Sbjct: 25 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 84 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + +V + Sbjct: 85 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 144 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + L +LT R +T K A + D A + I+ S+ H LRA+ Sbjct: 145 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 204 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A AP ++VT Sbjct: 205 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 261 Query: 250 ENDDPVLALA-------FRKKNINI------------------IYCDCRD---LKKLLTI 281 DP A IN + D R LL Sbjct: 262 ---DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAA 318 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--N 337 L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ + PL G + + Sbjct: 319 LDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHR 378 Query: 338 FMCVRRDYFGSDVCLE 353 F D G D+ +E Sbjct: 379 FRITSVDRIGPDLRIE 394 >gi|257462874|ref|ZP_05627280.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. D12] gi|317060498|ref|ZP_07924983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D12] gi|313686174|gb|EFS23009.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D12] Length = 359 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 176/319 (55%), Gaps = 8/319 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAG EA+ Sbjct: 5 EYMHFALKLAKKGEGKVNPNPLVGAVVVKNGNIIGQGYHHQYGGPHAEVYALQEAGTEAK 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 AT YVTLEPCSHYG++PPCA+ II+ GI+R ++ ++DP+ V+G+G+ + + GI V+ Sbjct: 65 DATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGIQVEV 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+E ++ +L K + LK ++ D + S IT ++ +V LR Sbjct: 125 GLCETEARVLNRVFLKYISTKTPFLFLKCGITLDGKLATRSFQSKWITNETARERVQYLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + I+VGI TV+ D+P L R+ NG P RII+DP+ ++ L SK++ +I Sbjct: 185 NKYMGIMVGIHTVIEDNPSLDARIENG---RDPYRIIVDPYLEIPLSSKLLHKKDKKVII 241 Query: 247 IVTENDDPV-LALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I + ++ K + I+ R +L + GV S+L+EGG + + Sbjct: 242 ITSLSEKETDKRKELEKLELRFIFLKERIFSFSNMLEEIGKLGVDSVLLEGGGQLISAAF 301 Query: 304 NSRLVDSIILYRSQIVIGE 322 ++D ++ + ++G+ Sbjct: 302 QENVIDGGEIFIAPKILGD 320 >gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS] gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS] Length = 373 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 126/360 (35%), Positives = 182/360 (50%), Gaps = 17/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M L + G S NP V +IV G VIG G G PHAEV A+ +E Sbjct: 13 DETYMWRCLELAERGAGSVSPNPMVGSVIVCAGRVIGEGWHRQYGGPHAEVDAIASVEDE 72 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + R +T YV LEPCSHYG++PPCA I+E I RVVV DP +V+G+G+ L + GI Sbjct: 73 SLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARLREAGI 132 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E+E + A++T + R + LK A + D I + S ITG S+ QV Sbjct: 133 EVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEESRCQV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DA+L G TVLAD+ ELT R ++ P+R++LDP ++ + +I A Sbjct: 193 HRLRCIYDAVLCGASTVLADNTELTVRFCAGRQ--PLRVLLDPRLQVPHEFRIFNDAAKT 250 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V + E DP L + I + D ++ L R + S+LVEGG+ +A Sbjct: 251 LVFALREEADPDLVRQLEARGIEVATVGEAEGSLDFAEVFAELHKRRLLSVLVEGGSRLA 310 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLE 353 + + S VD ++ + + G G+ S G + F +RR FG D+ LE Sbjct: 311 SAMVRSGFVDKYYVFIAPKLFGGDGLASFGALGVTHPDYAVKLSFSGIRR--FGEDLLLE 368 >gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia cenocepacia J2315] gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Burkholderia cenocepacia J2315] Length = 373 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P RI++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + R VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54] gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54] Length = 366 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 173/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)] gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24] gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)] gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24] Length = 381 Score = 179 bits (454), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 186/376 (49%), Gaps = 39/376 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + VG T +NP+V C+++ +G + GV G PHAEV AL A RG Sbjct: 1 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + +V + Sbjct: 61 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + L +LT R +T K A + D A + I+ S+ H LRA+ Sbjct: 121 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A AP ++VT Sbjct: 181 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 237 Query: 250 ENDDPVLALA-------FRKKNINI------------------IYCDCRD---LKKLLTI 281 DP A IN + D R LL Sbjct: 238 ---DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAA 294 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--N 337 L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ + PL G + + Sbjct: 295 LDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHR 354 Query: 338 FMCVRRDYFGSDVCLE 353 F D G D+ +E Sbjct: 355 FRITSVDRIGPDLRIE 370 >gi|262280656|ref|ZP_06058439.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202] gi|262257556|gb|EEY76291.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202] Length = 361 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 185/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL +A E+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAAEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + + E + FL A T ++ LK+A S D MA S ITG +++ Sbjct: 127 EVGICEDLAEKLNQGFLKAMST----GMPYVRLKVASSLDGRTAMASGESKWITGAVARQ 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKII 237 V RA S A++ GI TV+ADD +L R G + P RIILD +L L +KI+ Sbjct: 183 DVQHWRAISGAVITGIDTVIADDCQLNVRTLGSVDIETIAQPKRIILDRQGRLPLAAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +LVE Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLETQPLKVLLQTLSKQYQIYDVLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ LVD +I Y + ++G+ Sbjct: 291 AGATLSTAFLQEGLVDELISYIAPTLLGKSA 321 >gi|325124197|gb|ADY83720.1| bifunctional protein ribD [Acinetobacter calcoaceticus PHEA-2] Length = 361 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 119/327 (36%), Positives = 184/327 (56%), Gaps = 21/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL EAGE Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFALREAGEH 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EVGICEDLASKLNQGFLKAMSTGIPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHS---PMRIILDPHFKLSLDSKIIKTAL 241 RA S A++ GI TV+ADD +L R LN + P R++LD +L L++KI+ Sbjct: 187 WRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAKIL---- 242 Query: 242 LAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297 EN + V+ + +R++ ++ +I + + LK LL L + + +LVE GA Sbjct: 243 --------ENPETVMVMGPYRQELADLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEAGAT 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324 ++ +F+ LVD +I Y + ++G+ Sbjct: 295 LSTAFLQEGLVDELISYIAPTLLGKSA 321 >gi|296160058|ref|ZP_06842878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1] gi|295889804|gb|EFG69602.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1] Length = 391 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 171/329 (51%), Gaps = 15/329 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++A Sbjct: 3 SQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L Sbjct: 63 RSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K+A S D G+ S ITG + Sbjct: 123 DAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP +T R P R+++D + +++I+ Sbjct: 183 RADGHAWRARASAILTGIGTVRGDDPRMTVRAVDTPRQ-PQRVLIDSQLDVPPEAQILAG 241 Query: 240 ALLAPVIIVTENDDPV---LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLV 292 AP +I N D A A R + I+ DL +L +L R V L V Sbjct: 242 ---APTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG 321 E G + S + VD +++Y + ++G Sbjct: 299 EAGYKLNGSLLREGCVDELLVYLAPSLLG 327 >gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Citrobacter koseri ATCC BAA-895] gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895] Length = 367 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 195/368 (52%), Gaps = 22/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AG+ Sbjct: 2 LDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L QE+ P+RI+LD +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLV 292 +I++ T++D + R ++ + + +L +L+G+ + S+ V Sbjct: 242 HRIVQQPGDT-WFARTQDDSRIWPETVR--SLRVPEHNGHLDLVVLMMLLGKQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFG 347 E G +A + + + +VD +I+Y + ++G +P LE+ +F + G Sbjct: 299 EAGPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPG-LEKLSEAPHFKFNEIRHVG 357 Query: 348 SDVCLEYI 355 DVCL I Sbjct: 358 PDVCLHLI 365 >gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str. Bath] gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str. Bath] Length = 378 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 171/320 (53%), Gaps = 9/320 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ ALR + + T NP V ++V+ V+G G G PHAE+ AL +A A G Sbjct: 21 FMAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALRDARGRAAG 80 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 AT YVTLEPCSH+GR+PPCA +IE G+ RVV + DP+ RV+G+GL+ L + GI V Sbjct: 81 ATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRRAGIEVSCG 140 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + ++ R + K+A+S D +A S ITG ++ VH LRA Sbjct: 141 LLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAARRDVHRLRA 200 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +S I+ GIGT+ ADDP LT R N E P R+ILD + ++++ + ++ Sbjct: 201 RSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQP--GRTLV 258 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +T DP A ++ + D+ ++ +L +L E GA++ + Sbjct: 259 LTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEAGASLNGAL 318 Query: 303 INSRLVDSIILYRSQIVIGE 322 +++ +VD ++Y + V+G+ Sbjct: 319 LSAGVVDEWVVYLAPCVLGD 338 >gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal) and 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Regiella insecticola LSR1] gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal) and 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Regiella insecticola LSR1] Length = 381 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 118/343 (34%), Positives = 177/343 (51%), Gaps = 33/343 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64 D ++M+ AL + T+ NP+V C+IV++G ++G G G PHAE+ AL +A Sbjct: 9 DKKYMARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKAK 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +EAR AT YVTLEPC H GR+PPC +I GI+RVVV + DP+ +VSGRG+ L Q GI Sbjct: 69 DEARNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAGI 128 Query: 125 IVDRM----MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 +VD + ++++ + +L R + ++ LK+A S D MA S IT ++ Sbjct: 129 VVDYIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDP--- 226 V RAQSDAIL T+LAD+P LT R L P RII+D Sbjct: 189 QDVQNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCNR 248 Query: 227 ----HFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 H ++ + + A I +N + L + +K I DL+ + Sbjct: 249 VMPCHRVITEPGACLLARMTADQQIWPDNIEQLFLPPSEEEKRI--------DLRLFMME 300 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L R + S+ VE GA +A + + +VD +ILY + ++G+ Sbjct: 301 LSRRQINSIWVEAGATLAGALLQIGVVDELILYLAPKLLGDNA 343 >gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-2-3B'a(2-13)] Length = 370 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 185/356 (51%), Gaps = 11/356 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M L +R S NP V+C+IV+ V+G GV G PHAEV AL++AG Sbjct: 4 DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGDRVVGEGVHPGAGQPHAEVLALQQAGSL 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L + GI V Sbjct: 64 ARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGIDV 123 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + V ++ LK A++ D A S I+ ++ VH Sbjct: 124 TVGVLERECQELNEGFAFAIVRQQCFGLLKYAMTLDGKSAAATGHSRWISNSPARQWVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DA++VG TV D+P LTCRL LQ P+R++L L + + + AP Sbjct: 184 QRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRVVLSRSLNLPPVAHLWQVE-EAPT 242 Query: 246 IIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++TE P+ + K+ + +++ + +L RG S L E G +A + + Sbjct: 243 LVITEAVATHPLWG-SLAKQGVELLHLPQVTPSRAAQVLFQRGCLSALWECGGTLAWAAL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + + + + ++G P+P+ EG + N + + + LE +G N Sbjct: 302 KDGAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVN-----QSWQLVEPRLETLGDN 352 >gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica W22703] Length = 337 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 111/298 (37%), Positives = 161/298 (54%), Gaps = 14/298 (4%) Query: 36 VKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 ++DG ++G G G PHAEV AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ Sbjct: 1 MRDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALLTA 60 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITL 154 G++RVV + DP+ +V+GRGL L Q G+ VD +M +E + +L R ++ L Sbjct: 61 GVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPYLQL 120 Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K+A S D MA S IT ++ V RAQS AIL TVLADDP LT R L Sbjct: 121 KMAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRWQEL 180 Query: 215 QEHS-----------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 + P+RII+D H +++ K+I+ P + D ++ Sbjct: 181 DAQTQALYPQDALRQPVRIIVDSHNRVTPQHKVIQQD--GPCWLARVETDEQSWPNNVEQ 238 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + + DL L+ L R + S+ VE G A + + + +VD +ILY + ++G Sbjct: 239 LLLPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAPKLLG 296 >gi|332286796|ref|YP_004418707.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7] gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7] Length = 374 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 116/357 (32%), Positives = 185/357 (51%), Gaps = 15/357 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 D +M AL + + +T+ NP VACLIV+DG ++ G T G PHAE+ AL +A E Sbjct: 3 DEGWMRQALHLAESVLYITAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAER 62 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVTLEPCSHYGR+PPC +I RVV+ + DP+ V G+G+ L G Sbjct: 63 GIDTAGATVYVTLEPCSHYGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATG 122 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + +E + ++ ++ R K + LK+A S D I +A S ITG ++ Sbjct: 123 IAVTTDICTEEALAINPGFVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S +L G+GTVLADDP++ R + P++ I+D F++ ++I Sbjct: 183 GHHWRARSCVVLSGVGTVLADDPQMNVR-HVETARPPIKAIVDTRFQVMEQARIFDG--- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P + T DP +N+ ++ DL L+ L + + VE GA + Sbjct: 239 TPTWVFTCVSDPEKVHRLADRNVQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG-GIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + + ++ D +++Y + +++GEG G+ PL++ + F + DV L Sbjct: 299 SGALLQAQCTDELLVYMAPVLLGEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRL 355 >gi|296269350|ref|YP_003651982.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM 43833] gi|296092137|gb|ADG88089.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM 43833] Length = 362 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 124/326 (38%), Positives = 181/326 (55%), Gaps = 11/326 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 ++S D +M A+ + G TS NP V C++V G ++G G AY G PHAE+ AL Sbjct: 1 MTSRDDHYMRRAIELAARGHGGTSPNPVVGCVVVDPTGEIVGEGFHAYAGGPHAEIVALR 60 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE ARGATAYVTLEPC H GR+ PC +++ G+ RVVV V DP+ +G G + L + Sbjct: 61 QAGERARGATAYVTLEPCDHTGRTGPCTAALLQAGVARVVVAVPDPNPVAAG-GAETLLR 119 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ VD ++ +E + +LT +R +T K A + D A S IT ++ Sbjct: 120 HGVTVDVGVLAAEAERVNEEWLTYMRARRPFVTWKFAATIDGRSAAADGTSKWITSPEAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLDSKIIKT 239 VH LRA SDAI+ GIGTVLADDP LT R + P +R+++D + ++++ Sbjct: 180 ADVHRLRAASDAIVAGIGTVLADDPRLTVRTPEPRRTRPVLRVVVDSGARTPAGARVLDG 239 Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 AP ++ +D DP L + + D DL+ LL L R V S+L+EGG Sbjct: 240 E--APTLVAVADDADPPPHLG---DAVRLPRADGGLDLRALLAELHRRQVVSVLLEGGPT 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 +A SF+ LVD ++ Y + ++G G Sbjct: 295 LAGSFLREGLVDRVVGYLAPALLGAG 320 >gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM 12809] gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM 12809] Length = 387 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 167/304 (54%), Gaps = 9/304 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T TNP V ++ ++ RG AYGG PHAEV A++ G YVTLEPCSH Sbjct: 24 GYTKTNPVVGAIVANQSEILSRGWHMAYGG-PHAEVNAIDSCPVSTEGLDLYVTLEPCSH 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 G++PPC + I++ GIRRV + V DP+ V+G+G+++L G+ + ME + Sbjct: 83 SGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYVGYMEDLCASIIED 142 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 ++ EK+ + T K A + D I + S I+ S+ H +RA SDAILVG+ TV Sbjct: 143 FVKFITEKKPYYTFKTAQTLDGKIASSTGDSKWISSEASRTYTHYMRAVSDAILVGVNTV 202 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 +ADDPEL R+ + P +I+LDP ++ LD K+++ + A +I + + A Sbjct: 203 IADDPELNVRMVK-SDRDPFKIVLDPKGRMPLDRKLVENS--ADKLIYVTCAESRITEAL 259 Query: 261 RKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 R K ++I DL L LV R + ++++EGG A F ++ LVD + ++ + Sbjct: 260 RNKGADVITLGGDGSLDLNVLSDELVERSILNVMIEGGGTTAGKFFDAGLVDKVNIFIAM 319 Query: 318 IVIG 321 +++G Sbjct: 320 MIMG 323 >gi|34540017|ref|NP_904496.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83] gi|34396328|gb|AAQ65395.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83] Length = 330 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 116/326 (35%), Positives = 172/326 (52%), Gaps = 17/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ + Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L G+ Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGV 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179 V ++ E + +LT Q + R ++TLK A S D I A V ++ ++ Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH R DAILVG T L D+P LT R +P+R++ D H L + Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 ++ P ++ TE + P + ++ + D ++++L L RG+ SLLVEGGA Sbjct: 242 SV--PTLVFTEKEQP----SGYPSAVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 + SFI+S L D + + S I++ EG Sbjct: 296 ILRSFIDSGLYDDVRIEHSTIILNEG 321 >gi|148654182|ref|YP_001281275.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. PRwf-1] gi|148573266|gb|ABQ95325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter sp. PRwf-1] Length = 368 Score = 179 bits (453), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 188/363 (51%), Gaps = 34/363 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P D +M+ A+ ++ + T NP+V C+IV + +++G G G PHAEV AL Sbjct: 25 PPKKQDIYYMNLAIEEAKKGLFTTRPNPAVGCVIVNNNLIVGTGYHPQAGQPHAEVFALR 84 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EA + A+GATAYVTLEPCSH GR+PPCAQ +I G+ RVVV DP+ +V+GRG+ L Sbjct: 85 EAKDNAKGATAYVTLEPCSHTGRTPPCAQALINSGVSRVVVAGLDPNPKVAGRGIAMLKA 144 Query: 122 KGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V + ++ L+ +L + ++ LKIA S D MA S ITG ++ Sbjct: 145 AGIEVTVGVSTQQAEQLNLGFLKAMRTQMPYVRLKIASSLDGRTAMASGESKWITGPAAR 204 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235 V LRA S AI+ G T++ D+P L R + L + P ++LD + LD Sbjct: 205 EDVQKLRALSGAIITGSQTIIDDNPSLNVRSSQLGVALDKVPQPKIVVLD--RRQRLDQA 262 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 K V E+ D +++ + DL LL LV + V +LVE Sbjct: 263 HYK---------VFESPD------------TLLWAE-HDLTALLHQLVTQYQVQDVLVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVC 351 G+ V+ SFI + LVD +I+Y++ ++G P ++ +L+ F V GSD+ Sbjct: 301 GSQVSGSFIEAGLVDELIVYQAPCLLGHSAKPMLNLTVDNLFLQHRFERVSVSEVGSDLK 360 Query: 352 LEY 354 L Y Sbjct: 361 LVY 363 >gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae T7901] gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae T7901] Length = 363 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 181/332 (54%), Gaps = 12/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D FM ALR + + T+ NP V C++VKDG+VIG G G PHAEV AL Sbjct: 1 MDFSTADTVFMQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL 60 Query: 61 EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + ++ GATAYVTLEPCSH G++ PCA +++ GI R+V ++DP+ V+GRGL Sbjct: 61 KSVIDRQQLAGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDK 120 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G++VD ++E E ++ R + K+A+S D M S ITG Sbjct: 121 LQRAGVVVDGPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ V LRA+S AI+ G+ +VL DDP LT RL E P+R+I+D ++ +++ Sbjct: 181 SARADVQKLRARSCAIITGVESVLLDDPLLTVRLPEC-ERQPIRVIVDSQLRVDPSAEVF 239 Query: 238 K---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + T L+A + + +K + + D R+L LL + +L+E Sbjct: 240 RQPGTTLVATCDAAKALNSELDTWPLPEK---MGHVDLREL--LLGLAEHYQCNEVLLET 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA +A +F+ + LVD +I+Y + ++G P Sbjct: 295 GAKLAGAFVAAGLVDELIVYVAAKLMGSDARP 326 >gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis EO147] Length = 369 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 172/320 (53%), Gaps = 11/320 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI V Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ L Sbjct: 181 RARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLSARLLEGGSLLIF 238 Query: 246 IIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + A A R + I+ + R DL +L +L RG+ L VE G + S Sbjct: 239 CGALDPQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLNGS 298 Query: 302 FINSRLVDSIILYRSQIVIG 321 + R VD +++Y + ++G Sbjct: 299 LLRERCVDELLVYLAPSLLG 318 >gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MC40-6] gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MC40-6] Length = 373 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K A S D + S ITG + Sbjct: 123 DSGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12] gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12] Length = 366 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 118/327 (36%), Positives = 175/327 (53%), Gaps = 25/327 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA+++A Sbjct: 9 SEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQA 68 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G E RGAT YVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ L Sbjct: 69 WERGHEVRGATTYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLR 128 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E + +++R V + LK+A S D + + S IT + Sbjct: 129 DAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSEAA 188 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 + H RA++ A+L G+GTV ADDP+L R +Q P+RI++D + +++++ Sbjct: 189 RADGHHWRARACAVLTGLGTVRADDPQLNVR--AVQTPRQPIRIVIDSRLECPPTARLLQ 246 Query: 239 TALLAPVIIV----TENDDPVLALAFRKKNINIIYCD------------CRDLKKLLTIL 282 +A +P+ IV E P LA A R I ++ DL+ L+ +L Sbjct: 247 SA-DSPLWIVHALSPEQAAPRLA-ALRSAAIALLDLQDIALPADPDKPGKTDLRALMQVL 304 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVD 309 RG+ L E G + S + + +VD Sbjct: 305 GQRGINELHCEAGEKLNGSLLRAGVVD 331 >gi|289423250|ref|ZP_06425061.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius 653-L] gi|289156350|gb|EFD05004.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius 653-L] Length = 433 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 133/422 (31%), Positives = 205/422 (48%), Gaps = 82/422 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ + S NP V +IVKD +IG+G G HAE A+++ Sbjct: 10 DQHYMKIALDLAKRGIARVSPNPLVGAVIVKDDQIIGKGYHEKYGGLHAERNAIKDYKNR 69 Query: 67 A--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A GAT YVTLEPC HYG++PPC + IIE I+RVVV DP+ V+G+G++ Sbjct: 70 AINDPNLTIEGATMYVTLEPCCHYGKTPPCTEAIIENKIKRVVVASLDPNPLVAGKGVKI 129 Query: 119 LSQKGIIVD-----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 L + GI VD + + +IF H Y+ + KR +T+K A++ D + S Sbjct: 130 LEEVGIEVDIGVLKDEADRQNRIFRH-YI---INKRPLVTMKYAMTMDGKLATHTGKSKW 185 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQE----------HSPM 220 ITG ++ +VHL R ++ AI+VG+GTVLADDP L CRL +G + +P+ Sbjct: 186 ITGHDARRRVHLDRLRNMAIMVGVGTVLADDPSLNCRLEDFDGFDKIKKDYSIEGLRNPI 245 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR------------------K 262 R+++D + +SKI+ +A II T ++D A+ K Sbjct: 246 RVVVDSSLRTPFNSKIVTSAKDIKTIIFTISEDMEKIRAYEDRDCIVIKTKKKLYRSIGK 305 Query: 263 KNINI-----------------IYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVA 299 K + I +Y + + DL+ L+ IL G+ S+L+EGG+ + Sbjct: 306 KQVQIGQEIQMDQDGHKYQEYQVYQERQGERFVVDLEDLVEILGQMGIDSILLEGGSQLN 365 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL--------EEGYLEKNFMCVRRDYFGSDVC 351 S + S +VD + Y + G SP+ E+ Y+ +N + D G D+ Sbjct: 366 FSALESGIVDRVQAYIGPKIFGGEKAKSPIGGIGVDLPEDAYMLEN---IEFDSVGKDIL 422 Query: 352 LE 353 LE Sbjct: 423 LE 424 >gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9] gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9] Length = 376 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 174/335 (51%), Gaps = 5/335 (1%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FDA M L+ +R +G TS NP V ++VKDG ++G G G PH EV AL AGE Sbjct: 16 FDALMMQRCLQLARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHGEVFALRAAGE 75 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L GI Sbjct: 76 RARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGIE 135 Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +E E + ++ R + ++ LK A++ D I S IT ++++VH Sbjct: 136 VIVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLDGKIASNSGHSTWITNNQARSEVH 195 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA DA++VG TV D+P+LT ++P+R+++ L ++ + T + Sbjct: 196 QLRAACDAVIVGGNTVRRDNPQLTTHQQA--GYNPLRVVMSASLNLPENAHLWDTGVAPT 253 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +++ E P +K + ++ ++ L RG ++L E G +A I Sbjct: 254 LVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARAIA 313 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339 V ++ + + +I GGI +P G L N M Sbjct: 314 ENAVQKVLAFIAPKII--GGIYAPTPVGDLGLNSM 346 >gi|169797510|ref|YP_001715303.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter baumannii AYE] gi|213155676|ref|YP_002317721.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB0057] gi|215484945|ref|YP_002327186.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB307-0294] gi|301346214|ref|ZP_07226955.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB056] gi|301512963|ref|ZP_07238200.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB058] gi|301595094|ref|ZP_07240102.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB059] gi|332851510|ref|ZP_08433507.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013150] gi|332866790|ref|ZP_08437194.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013113] gi|169150437|emb|CAM88334.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter baumannii AYE] gi|213054836|gb|ACJ39738.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB0057] gi|213986529|gb|ACJ56828.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB307-0294] gi|332729963|gb|EGJ61294.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013150] gi|332734398|gb|EGJ65518.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013113] Length = 361 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 183/329 (55%), Gaps = 29/329 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL +AGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ADD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIDTVIADD----CQLNVRSLHNIDIETVVQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +L+E Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322 GA ++ +F+ L+D +I Y + ++G+ Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQ 319 >gi|239637909|ref|ZP_04678870.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri L37603] gi|239596472|gb|EEQ79008.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri L37603] Length = 347 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 163/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA Sbjct: 2 SKFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G L GI V+ Sbjct: 62 NGATIYVSLEPCTHHGSTPPCVDKIIEAGIHKVIYAV--KDTTLISKGDDILKNAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + T + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKEVKKDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA+L G TV ADDP T R+ + P+R+IL KL + ++ +P+ I Sbjct: 180 HSHDAVLTGRKTVEADDPLYTTRIADGKH--PIRVILSKSGKLDFNQQLFHD-YASPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L N+ IIY + D+K +L L +G+ LLVE G + F+ S Sbjct: 237 YTENKN----LKVDNSNVTIIYMEQCDIKSILKDLYQKGIGKLLVEAGPEITSEFLQSDH 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ++LY + +IG G Sbjct: 293 LDHLVLYFAPKIIGGSG 309 >gi|239502078|ref|ZP_04661388.1| pyrimidine deaminase [Acinetobacter baumannii AB900] Length = 361 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL EAGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFALREAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILENAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ADD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +L+E Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ L+D +I Y + ++G+ Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321 >gi|237737703|ref|ZP_04568184.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium mortiferum ATCC 9817] gi|229419583|gb|EEO34630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium mortiferum ATCC 9817] Length = 358 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 124/362 (34%), Positives = 200/362 (55%), Gaps = 19/362 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ AL + G + NP V ++VKDG+V+G G G PHAEV ALE AGE Sbjct: 1 MDKKYMARALELAALGEGSVNPNPLVGAVVVKDGVVVGEGYHKKYGGPHAEVFALEMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GA YVTLEPCSHYG++PPCA+ IIE GI+R +V DP+ VSGRG++ L GI Sbjct: 61 KAYGADIYVTLEPCSHYGKTPPCAKKIIEMGIKRCIVASLDPNPLVSGRGIKMLQDAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +ME E K ++ EK+S++ LK ++ D I S IT +++ +V Sbjct: 121 VVTGVMEREAKELNRVFMKYISEKKSYLFLKCGITLDGKIATKTGNSKWITNELAREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR + I+VGI TVL DDP LT R+ NG P RI++DP ++ L+SKI+ Sbjct: 181 RLRNRYMGIMVGINTVLKDDPSLTARIENG---RDPYRIVIDPKLEIPLESKIVNFEDGK 237 Query: 244 PVIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 VII ++ + + + L ++ + + D ++ ++L G+ +++EGG+ + Sbjct: 238 SVIITSQENRESEKIKILEEKRVRVEYLEGDEFEVSEILKKTGELGIDGIILEGGSYLIS 297 Query: 301 SFINSRLVDSIILYRSQIVIGE--------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 +D ++ + ++G+ G + +G+ KN V+ + +G++V + Sbjct: 298 KAFKENAIDGGEIFIAPKILGDSEAISFVRGFSVENIADGFELKN---VKINSYGNNVSM 354 Query: 353 EY 354 E+ Sbjct: 355 EF 356 >gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia sp. 383] gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp. 383] Length = 373 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 173/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDIDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGYDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P RI++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPVLAL---AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D L + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAASELRANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 366 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 174/328 (53%), Gaps = 8/328 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA++M A+ ++ G + NP V +IVKD +IG+G G HAE AL + Sbjct: 3 DAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI V Sbjct: 63 PAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIRV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++ E + + + ++ +K A++ D I S I+G S+ +VH Sbjct: 123 DVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA Sbjct: 183 LRRSVAAVMVGVNTVIEDDPLLTCRM--AHGRNPVRVVCDTRLRTPLTSRIVQTANDVRT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T DD A +R+ I+ D DL ++ L + S+L+EGG+A+ S Sbjct: 241 YIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL 329 + R+VD +Y + + G G SP+ Sbjct: 301 ALEQRIVDEAHVYIAPKIFG-GTAKSPV 327 >gi|169634649|ref|YP_001708385.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter baumannii SDF] gi|169153441|emb|CAP02583.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter baumannii] Length = 361 Score = 178 bits (452), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL +AGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPRAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAQLNQGFLKAMSSGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ADD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRPLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +L+E Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ L+D +I Y + ++G+ Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321 >gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis raciborskii CS-505] gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis raciborskii CS-505] Length = 385 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/327 (33%), Positives = 170/327 (51%), Gaps = 3/327 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FDA M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 14 SEFDALMMQRCLELARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 73 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L G Sbjct: 74 GERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAG 133 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E E + ++ R + ++ LK A++ D I S IT ++++ Sbjct: 134 IEVIIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLDGKIASNSGHSTWITNSQARSE 193 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT ++P+R+++ L ++ + T + Sbjct: 194 VHQLRAACDAVIVGGNTVRRDNPHLTTHQQ--TGYNPLRVVMSASLNLPENAHLWDTRVA 251 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ E P +K + ++ ++ L RG ++L E G +A Sbjct: 252 PTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARA 311 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPL 329 I V ++ + + +IG P+P+ Sbjct: 312 IAENAVQKVLAFIAPKIIGGIDAPTPV 338 >gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 190/372 (51%), Gaps = 38/372 (10%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEE 66 +M AL ++ +G TS NP V +IV+DG +IG G G HAE A +E G + Sbjct: 6 YMRRALELAQRGMGFTSPNPMVGAVIVRDGKIIGEGWHKKYGELHAERTAFAYCDENGID 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA YVTLEPC H+G+ PPC +IE GI+RV + DP+ VSG+G++ L + GI + Sbjct: 66 CTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREHGIEV 125 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ E IF H ++T +T+K A++ D I S ITG ++ Sbjct: 126 TEDVLREECDAINGIFFH-WITHNW---PFVTVKYAMTLDGKIATHTGESKWITGEEARL 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V R + AI+VGIGTVLADDP LTCRL ++ P+RII D ++ LDS I+KTA Sbjct: 182 DVQRERLRHSAIMVGIGTVLADDPMLTCRLENGRD--PIRIICDSRLRIPLDSNIVKTAK 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----------DLKKLLTILVGRGVTSL 290 P II N + +K + CR DL L+ L + S+ Sbjct: 240 DVPTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHVDLYTLMLKLREMKIDSI 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EG-GIPSPLEEGYLEKNFMCV 341 LVEGG + S +LV + Y + + G EG GIP+P + Y+ +N + Sbjct: 300 LVEGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWGIPTP-NDAYMIENTQ-I 357 Query: 342 RRDYFGSDVCLE 353 RR G D+ +E Sbjct: 358 RR--IGEDILIE 367 >gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Dickeya dadantii 3937] gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Dickeya dadantii 3937] Length = 370 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 121/339 (35%), Positives = 175/339 (51%), Gaps = 28/339 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R TS NP+V C+IV+D ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEV 125 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +ME KI +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 RHSVLMEQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L + P+R+I+D +++ Sbjct: 185 RFRAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQ 244 Query: 234 SKIIKTALLAPVIIVTENDDPV------LALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++I + ++ P L + I DL L+ L R + Sbjct: 245 HRLISQPGQTWLARSRQDGQPWPDGVEQLDMPLHGGGI--------DLVALMMTLGKRQI 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 ++ VE G +A + + + +VD +I+Y + ++G+ P Sbjct: 297 NTVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAARP 335 >gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD] gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia ambifaria AMMD] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA41317] Length = 366 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 173/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145] gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 113/327 (34%), Positives = 174/327 (53%), Gaps = 16/327 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R T NP+V C+IVKD ++G G G PHAEV AL +AG + Sbjct: 10 DHLYMHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAGTQ 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+ ATAYVTLEPCSH GR+PPC +I + RVV+ + DP+ VSGRG+ L I V Sbjct: 70 AKHATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADIEV 129 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+ + ++ R + ++ +K+A S D ++ S ITG ++ V + Sbjct: 130 RVGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADVQV 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCR----LNGLQE----HSPMRIILDPHFKLSLDSKII 237 RAQ+DAIL G TVL D+P L R NG+++ P+R+I+D ++ D ++ Sbjct: 190 WRAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLRLF 249 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294 + PV +V + P A R + I D + DL L L R + + E Sbjct: 250 EVE--TPVFVVRTTEAP--ASRHRHCHEIIAKADSQGRVDLHDALKELALREINLVWTEC 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A + N+++V+ ++ Y++ V+G Sbjct: 306 GAQLAGALFNAQVVNELVYYQANKVLG 332 >gi|289424953|ref|ZP_06426732.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK187] gi|289154652|gb|EFD03338.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK187] gi|313763122|gb|EFS34486.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL013PA1] gi|313793372|gb|EFS41430.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA1] gi|313800984|gb|EFS42252.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA2] gi|313812185|gb|EFS49899.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL025PA1] gi|313814722|gb|EFS52436.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL059PA1] gi|313828278|gb|EFS65992.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL063PA2] gi|313838062|gb|EFS75776.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL086PA1] gi|314914448|gb|EFS78279.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA4] gi|314917772|gb|EFS81603.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA1] gi|314919502|gb|EFS83333.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA3] gi|314930094|gb|EFS93925.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL067PA1] gi|314957061|gb|EFT01166.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL027PA1] gi|314957695|gb|EFT01798.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA1] gi|314963428|gb|EFT07528.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL082PA1] gi|314968931|gb|EFT13029.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA1] gi|315077277|gb|EFT49339.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL053PA2] gi|315079956|gb|EFT51932.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL078PA1] gi|315097872|gb|EFT69848.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL059PA2] gi|315100736|gb|EFT72712.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL046PA1] gi|315109263|gb|EFT81239.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL030PA2] gi|327451322|gb|EGE97976.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA3] gi|327451701|gb|EGE98355.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL092PA1] gi|327452164|gb|EGE98818.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL083PA2] gi|328752420|gb|EGF66036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA1] gi|328755093|gb|EGF68709.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL025PA2] Length = 331 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294 >gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222] gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222] Length = 364 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 178/330 (53%), Gaps = 27/330 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+ Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI V+ Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDVEI 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E + A++ R + LK+A S D + S IT ++ V R Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLSLDSKI 236 A+S A+L TV+ D+ L R + +++H P+R+ILD +L + K+ Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEG 294 +T VL +A +I + + DL L+ L + + VE Sbjct: 241 FQTPT------------SVLRVAEASADIEVGTTEVGQLDLHDLMRQLPANHIDHIWVEA 288 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A S I +RLVD +ILY + ++G G Sbjct: 289 GATLAKSLIEARLVDELILYLAPKLMGSDG 318 >gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586] gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586] Length = 370 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/333 (36%), Positives = 176/333 (52%), Gaps = 24/333 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +M+ KI +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 QHGVLMDQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L + P+R+I+D +++ Sbjct: 185 RFRAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQ 244 Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 +++ +T L D V L I DL L+ L R + + Sbjct: 245 HRLVSQPGQTWLARASQDAQSWPDGVEQLTMPLHGGGI------DLVALMMTLGKRQINT 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + VE GA +A + + + +VD +I+Y + ++G+ Sbjct: 299 VWVEAGAHLAGALLQAGVVDELIVYLAPTLLGD 331 >gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia MC0-3] gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia MC0-3] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P RI++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D + A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + R VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU 1054] gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia HI2424] gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia cenocepacia AU 1054] gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia cenocepacia HI2424] Length = 373 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P RI++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D + A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + R VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLG 327 >gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria IOP40-10] gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria IOP40-10] Length = 373 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|299771887|ref|YP_003733913.1| pyrimidine deaminase [Acinetobacter sp. DR1] gi|298701975|gb|ADI92540.1| pyrimidine deaminase [Acinetobacter sp. DR1] Length = 361 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 185/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL +A E+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAAEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-- 124 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 125 ---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + + E + FL A T ++ LK+A S D MA S ITG +++ Sbjct: 127 EVGICENLAEKLNQGFLKAMST----GMPYVRLKVASSLDGRTAMASGESKWITGAVARQ 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKII 237 V RA S A++ GI TV+ADD +L R G + P R++LD +L L++KI+ Sbjct: 183 DVQHWRAISGAVITGIETVIADDCQLNVRSLGHIDIETVAQPKRVVLDRQGRLPLNAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + VL + +R++ ++ +I + + LK LL L + + +LVE Sbjct: 243 ------------ENPETVLVMGPYRQELADLGVIQLEIQPLKILLQTLSKQHQIYDVLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ LVD +I Y + +G+ Sbjct: 291 AGATLSTAFLQEGLVDELISYIAPTFLGKSA 321 >gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396884|sp|Q89AB0|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 372 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 185/345 (53%), Gaps = 24/345 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ TS NP+V C+IV + I++G G G HAE+ AL+ +GE+ Sbjct: 3 DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAY+TLEPCSH+G++PPC + + GI RVV+ DP+ +VSG G++WL + GI+V Sbjct: 63 AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 S+ I ++ + R I LK+A S D + S IT +++ V Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-------LNGLQEHS------PMRIILDPHFKLSL 232 +R +SDAI+ T+L D+P LT R L +HS P+R+I+D +++ Sbjct: 183 VREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITP 242 Query: 233 DSKIIKT-ALLAPVIIVTEND---DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 K IK LL + I ++N+ + + K+ I DL L+ +L + Sbjct: 243 SHKCIKQPGLLFLIRIHSDNNIWPSHIKQIILNNKSKKI------DLIDLVKMLAKYQIN 296 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 ++L+E G +++ SF+ +++ +I+Y + ++G P E Y Sbjct: 297 NILIEAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENY 341 >gi|327332327|gb|EGE74063.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL097PA1] Length = 331 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/297 (37%), Positives = 159/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294 >gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115] gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti VCD115] Length = 368 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 36/371 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + +G TS NP V C+IV+DG V+GRG G PHAEV AL EAGE Sbjct: 8 DTEYMRLALNEAARGMGRTSPNPPVGCVIVRDGQVVGRGFHPRAGEPHAEVFALREAGEY 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ +VV+ DP+ RV G+G L + GI + Sbjct: 68 ARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIEV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVP--ITGFISK 180 + + E E + + + R + K A++ D + +G G +TG S+ Sbjct: 128 IVGVAEEEALRQQAGFRSLVMRARPWVIYKYAMTLDGKVAALDASGRGEANGLVTGLASR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +V R + D I VG GTV+ DDP LT R + G ++ P ++ D + S +++I+ Sbjct: 188 ARVMAWRNEVDGIAVGSGTVITDDPLLTTRGVEGGRDPRP--VVFDGQGRTSASARVIRP 245 Query: 240 ALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++VT P + ++ +IY + L L ++L VEGG + Sbjct: 246 G----AVVVTA---PGMDMSRHEAAGAQVIYAT--QPSEALAELGRLNFSTLFVEGGPTL 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A S +++ LVD + + + ++G G P P+ E + + DV E Sbjct: 297 AGSLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVRPMHEAQVLR------------DVTFE 344 Query: 354 YIGKNLCLQEL 364 +G +L ++ L Sbjct: 345 SLGPDLLIRGL 355 >gi|254516856|ref|ZP_05128914.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3] gi|219674361|gb|EED30729.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3] Length = 365 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/325 (35%), Positives = 176/325 (54%), Gaps = 11/325 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + NP V C++V+D ++G G T G HAEV AL+ AG+ AR Sbjct: 1 MARALRLAERGKYWARPNPHVGCVLVRDSGIVGEGFTQPAGGDHAEVVALKSAGDAARDC 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPC+H GR+PPC+Q +IE G+ RVVV + DP+ +V G GL+ L+ GI V + Sbjct: 61 TAYVTLEPCAHVGRTPPCSQALIEAGVARVVVGLKDPNPKVDGGGLRDLAAAGIEVSEGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M ++ ++ L +L RQ R + +K+A+S D MA S ITG ++ V LRA+ Sbjct: 121 MAAQVELQLAGFLARQRRGRPRLRIKLAMSLDGRTAMASGESQWITGADARRDVQKLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALL 242 S AIL GIGTVLADD LT R E +R++ D + D+ +++ A Sbjct: 181 SCAILTGIGTVLADDCALTVRDAFFDEELLPPPQRRAIRVVADTRLRTPPDAAVLQGA-- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P +++ ND + + + D ++L+ L R +L+E G +A + Sbjct: 239 QPSLLLHANDAVCPGSLTGAARLALPSPAEGLDPAQILSALADRECNEILLESGPTLAGA 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 + S L D +I+Y + +++G P Sbjct: 299 MLQSGLADQLIVYMAPVLLGSRARP 323 >gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae TIGR4] Length = 360 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 110/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E GA Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V + Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ + ++ +K A+S D I S IT ++ VH LR Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHH 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA I T Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++D ++ I+ + DL L+ L + SL++EGG+ + S + Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298 Query: 306 RLVDSIILYRSQIVIG 321 ++VD + +Y + V G Sbjct: 299 QIVDELKIYIAPKVFG 314 >gi|170288788|ref|YP_001739026.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2] gi|170176291|gb|ACB09343.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2] Length = 348 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/319 (36%), Positives = 176/319 (55%), Gaps = 19/319 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A GE+ Sbjct: 5 FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI + Sbjct: 65 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E E K ++T +KR + LK A + D I S IT + + +VH Sbjct: 124 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244 +R A+LVG GTVL DDP+LTCRL + +P+R+ILD K L K+ + A Sbjct: 183 MRNIYSAVLVGAGTVLKDDPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 VI+ TE+++ A ++ DC ++ +L L R + S+LVEGG+ V F++ Sbjct: 239 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 292 Query: 305 SRLVDSIILYRSQIVIGEG 323 D + + S + G+G Sbjct: 293 H--ADVVFGFYSTKIFGKG 309 >gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola CNS-205] gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola CNS-205] Length = 353 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 171/328 (52%), Gaps = 26/328 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ AL +AGE ARG Sbjct: 10 MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVALAQAGERARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC+ +++ GI RVV+ V DP+ SG G L GI VD Sbjct: 70 GTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDPNRAASG-GAATLRAAGIRVDLG 128 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 R E+E A+LT ++ K A + D A S+ IT +++ VH L Sbjct: 129 VRAAEAEAGNV--AWLTSTRRGWPYVIWKYAATLDGRSAAADGTSMWITSEVARMDVHAL 186 Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R DA+L G+GTVLADDP LT R L P+R+++D + +++ A A Sbjct: 187 RGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSTGRTPPGARVRDDA--A 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I T + + + +L LL L RGV + LVEGG +A +F+ Sbjct: 245 PTWIAT------------AEEVGVDPEGRVELAGLLAALHQRGVRAALVEGGPRLAGAFL 292 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + LVD I+ Y + ++G G P+ L E Sbjct: 293 AAGLVDKIVGYVAPRLLGAG--PAALTE 318 >gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5] gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5] Length = 373 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL+ A Sbjct: 3 SDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKNA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RTRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|253732422|ref|ZP_04866587.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723812|gb|EES92541.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 357 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 162/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 12 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 71 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+ Sbjct: 72 EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAQGIEVE 129 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 130 CVDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 189 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 190 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 246 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + NI IIY DL +L L RGV +LLVE G F+ S Sbjct: 247 YTENPN----LTTNQTNIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 302 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 303 IDEFILYYAPKLIGGSG 319 >gi|223939370|ref|ZP_03631249.1| riboflavin biosynthesis protein RibD [bacterium Ellin514] gi|223891974|gb|EEF58456.1| riboflavin biosynthesis protein RibD [bacterium Ellin514] Length = 365 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 118/322 (36%), Positives = 166/322 (51%), Gaps = 11/322 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL +R G TS NP V ++VK G VIGRG G PHAEV+AL++A G + Sbjct: 1 MQNALALARRAYGNTSPNPLVGAVLVKHGKVIGRGWHHRAGQPHAEVEALKDAASKGNDP 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GAT YVTLEPC +GR+PPC + I I++VVV DP+ +GR L + GI +V Sbjct: 61 KGATLYVTLEPCCTHGRTPPCTEAIKAAKIKKVVVAATDPNPAHAGRAFPLLERAGIKVV 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ V + +K A++ D I AG S ITG ++ L Sbjct: 121 SGILAEEAGELNESFNHWIVHGTPLVIVKAAMTLDGKIATAGGESKWITGEKARAYGMKL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R +DAILVG+ TVLADDP LT R+ N +E RIILD + L +K++ Sbjct: 181 RQGADAILVGVNTVLADDPSLTVRVQSRNKSEEKKFRRIILDSQARTPLKAKVVSDEFRE 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 IV P + + N++ + DL+ L+ L G V SLLVEGG V Sbjct: 241 FTTIVVLKSAPERRVTALARQANVLVAPEKQGKIDLRWLVKKLGGENVMSLLVEGGGEVN 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 SF+ RL + + + ++G Sbjct: 301 ASFLLGRLAHRVAFFYAPKILG 322 >gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8] gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8] Length = 369 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 166/320 (51%), Gaps = 10/320 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 FM AAL + +G + NP V +IV+DG +I G G HAE A + ++ Sbjct: 6 FMQAALDSAENGMGFVNPNPMVGAVIVRDGKIIASGFHERYGSLHAERSAFAQCNKKGIN 65 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA YVTLEPC H+G+ PPC + I GIR V + DP+ VSG+G +L +GI + Sbjct: 66 CAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGIGV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ + + +TLK A++ D S ITG ++ VH Sbjct: 126 TEGVLKEKCDKLNEIFFKFITTGLPFVTLKYAMTLDGKTACYTGESKWITGETARRHVHR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+ GIGTVLADDP LTCR+ ++ P+R+I D H ++ LDS I++TA P Sbjct: 186 ERLRHAAIMAGIGTVLADDPLLTCRIENGRD--PLRMICDTHLRIPLDSNIVRTAEKVPT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +IV +D A A + I+ DL L+ +L + + S+L+EGG +A S Sbjct: 244 MIVCGEEDAQKADALKNAGCQIVCLPNGNGGTDLSALMKMLGEKKIDSVLIEGGGTLAWS 303 Query: 302 FINSRLVDSIILYRSQIVIG 321 + +VD ++ Y + + G Sbjct: 304 ALECSIVDKVMAYTAPKIFG 323 >gi|282855094|ref|ZP_06264426.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139] gi|282581682|gb|EFB87067.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139] Length = 331 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294 >gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 371 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/333 (36%), Positives = 180/333 (54%), Gaps = 14/333 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D ++M AL ++ + L + NP V C+IVKDG VIGRG T G HAE+QA+ +A Sbjct: 3 SAVDHQWMGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G++ G+T YVTLEPCSH GR+PPC ++ +V+V + DP+ VSG GL L+ Sbjct: 63 KANGKDIAGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLT 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ESE + +++R + +KIA S D + S ITG ++ Sbjct: 123 DAGIEVQCGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RAQ+ AI+ G+GTV DDP L R P RII+D + +++I+ Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVSTHRQ-PWRIIVDSKLETPPNAQILND 241 Query: 240 ALLAPVIIVTENDDPVLALA----FRKKNINII-YCDCR---DLKKLLTILVG-RGVTSL 290 + VIIV D V +A F+K+ I +I + + + DL KL T L R + + Sbjct: 242 LQDSGVIIVCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +E G + S + VD ++LY + +GEG Sbjct: 302 HIESGFKLNGSMLREGCVDELLLYYAPFFMGEG 334 >gi|314982172|gb|EFT26265.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA3] gi|315090403|gb|EFT62379.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA4] Length = 331 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 159/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLCCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294 >gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Taiwan19F-14] gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Taiwan19F-14] gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA04375] Length = 366 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 108/320 (33%), Positives = 173/320 (54%), Gaps = 7/320 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTIDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIG 321 + ++VD + +Y + + G Sbjct: 301 ALEQQIVDELKIYIAPKIFG 320 >gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum 3TCK] gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum 3TCK] Length = 371 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 176/334 (52%), Gaps = 20/334 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL A Sbjct: 3 SSIDHSMMLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ +GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L G Sbjct: 63 GEQTKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ ++ + ++ R ++ LK+A S D ++ S ITG ++ Sbjct: 123 IEVQTGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RA++ AIL TV+ADDP L R + L E P R+I+D +++ Sbjct: 183 VQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRVT 242 Query: 232 LDSKIIKTA---LLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 D K+ A LLA + E D V + K++ + + +L L+ L + + Sbjct: 243 PDFKLFSLAGKTLLARAEMGQETWSDSVSQVIIPKEDDS----EQLNLTSLMLELAKQDI 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + VE GA +A + S LVD +I+Y++ ++G Sbjct: 299 NHIWVEAGAELAGGLLASGLVDELIIYQAPKLMG 332 >gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T] gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T] Length = 365 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 9/303 (2%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 TS NP V C+IV+DG +G G A G HAEV AL +AG ARGATAYVTLEPCSH+GR Sbjct: 25 TSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAAARGATAYVTLEPCSHFGR 84 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYLT 143 +PPCA +IE G+ RV+ ++DP+ V+GRGL L GI + +E L+ +++ Sbjct: 85 TPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLLAEAAQELNIGFVS 144 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R R + LK+A + D + S ITG ++ H RA++ AIL GIGTV D Sbjct: 145 RMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARACAILTGIGTVRED 204 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 DP+L R + E P+RI++D ++S ++I++ P++I T + D R Sbjct: 205 DPQLGVR-DVPCERQPLRILVDARLEVSPQARILQG---EPILIATGSTDQARIDMLRAA 260 Query: 264 NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 I++ DL LL +L RG+ L VE G + S + VD +++Y + ++ Sbjct: 261 GHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVDELLIYLAPML 320 Query: 320 IGE 322 +G+ Sbjct: 321 VGD 323 >gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913] gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913] Length = 375 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 112/331 (33%), Positives = 174/331 (52%), Gaps = 15/331 (4%) Query: 4 SSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 SSF D R+M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL Sbjct: 5 SSFSEDDKRYMARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE A+GATAYVTLEPCSHYGR+PPCA+ + G+++V+ + D + +V+G+GL+ L+ Sbjct: 65 TMAGENAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILA 124 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++E++ + + R + +T K+A S D + S ITG + Sbjct: 125 DAGIEVAYGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLS 231 + V L RAQS AIL G TVL DD +L R L P+R+++D +L+ Sbjct: 185 RQDVQLYRAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLT 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSL 290 D + ++ + VII T D K I + + + DL +L L ++ Sbjct: 245 PDLALF--SIQSEVIIFTTKVDKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNV 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +E GA +A L+D + Y + ++G Sbjct: 303 WLEAGATLAGKMTELDLIDEFVFYIAPKLMG 333 >gi|153834818|ref|ZP_01987485.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] gi|148868746|gb|EDL67820.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] Length = 374 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/334 (36%), Positives = 172/334 (51%), Gaps = 24/334 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D MS AL ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ A Sbjct: 11 TSQDFEMMSRALMLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRMA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++ +GATAYVTLEPCSHYGR+PPCA+ +IE + RVV ++DP+ +V+GRG Q L G Sbjct: 71 GDKTQGATAYVTLEPCSHYGRTPPCAEGLIEAKVARVVCAMEDPNPKVAGRGFQMLRDAG 130 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++ESE ++ +I LK+A S D ++ S IT ++ Sbjct: 131 VEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QE--HSPMRIILDPHFKLS 231 V RA S IL TV+ D+ L R L QE P R+I D +LS Sbjct: 191 VQRYRALSGGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQLS 250 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSL 290 D K+ T IIV++ D L +N I DL L + + L Sbjct: 251 DDLKLFNTD--GERIIVSQGGDMAPEL---DENGQI------DLAATLRNVASEYHINHL 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GA +A S I + LVD +I+Y + ++G G Sbjct: 300 WVEAGATLASSLIKANLVDELIVYLAPKLMGSDG 333 >gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001] gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001] Length = 371 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/355 (32%), Positives = 183/355 (51%), Gaps = 10/355 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL+ + G TS NP V C+++ +G ++G G + G HAEV AL +AGE ARG Sbjct: 1 MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC H+GR+PPC+ ++ GIRRVVV + DPD +V+G G+ L G+ +++ Sbjct: 61 GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEVIEG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + A+L R +R LK A+ D + S I+G ++N VH LRA Sbjct: 121 VAAEEARALNRAFLHRIAHRRPFGILKWAMGVDGRTALPNGASQWISGPEARNWVHALRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++VG GTV ADDP LT R G + P+R++L L +++ TA AP ++ Sbjct: 181 RCDAVVVGGGTVRADDPLLTSR--GRRHSEPLRVVLSRSLALPERARLWDTA-QAPTLVA 237 Query: 249 TENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + P ++ I + + + L+ L RG +L E GA +A + + Sbjct: 238 HGYEAPARRRFQLDQRGIERLVLEACEPWALMQELARRGCNQVLWECGAELATAALRQSC 297 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 V + + V+G +P+ + F +++ C + +G +L Q Sbjct: 298 VQEVAAVIAPKVMGGTLARTPVG----DLGFTGMQQVPAWQTTCPQQLGDDLLWQ 348 >gi|260556402|ref|ZP_05828621.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC 19606] gi|260410457|gb|EEX03756.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC 19606] Length = 361 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL +AGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ADD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIDTVIADD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +L+E Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ L+D +I Y + ++G+ Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321 >gi|88704437|ref|ZP_01102151.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis KT71] gi|88701488|gb|EAQ98593.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis KT71] Length = 377 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/379 (31%), Positives = 191/379 (50%), Gaps = 25/379 (6%) Query: 1 MPVSSFDA---RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57 MP + DA +FM+ ALR + NP V C++V+D V+G G T G HAE+ Sbjct: 5 MPSDTPDAGDRQFMARALRLAERGKYWARPNPHVGCVLVRDSTVVGEGFTQPAGGDHAEI 64 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL+ AG+ ARG+TAYVTLEPC+H GR+PPC +I G+ RV V + DP+ +V G G+ Sbjct: 65 MALKAAGDAARGSTAYVTLEPCAHTGRTPPCCNALIAAGVARVFVGLRDPNPKVDGGGIH 124 Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L +G+ V + +M + + L +L RQ R + +K+A+S D MA S ITG Sbjct: 125 RLQAEGLAVHQGLMADQVEAQLAGFLQRQRLGRPRLRIKLAMSLDGRTAMASGESQWITG 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFK 229 ++ V LRA+S AIL G+GTVL DD LT R + + +R++ D H + Sbjct: 185 PQARLDVQKLRAESCAILTGVGTVLEDDCALTVRDSAFDDELLPAPQRRALRVVADRHLR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLA-----LAFRKKNINIIYCDCRDLKKLLTILVG 284 + +++ + ++ + D L LA + + + ++ L Sbjct: 245 TPAHAAVLQGEQPSLILHGSGADASHLPETLEHLALPGEAGGVAPAE------IMAALAA 298 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCV 341 R +L+E G +A + + S + D++I+Y + +++G P PL+E V Sbjct: 299 RECNEILLESGPTLAGAMLRSGMADALIVYIAPVLLGSRARPLLELPLDEMAEALRLQLV 358 Query: 342 RRDYFGSDVCLEYIGKNLC 360 R G D ++ +++ Sbjct: 359 DRRQIGDDHRFVFVPQSVA 377 >gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus 12B01] gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus 12B01] Length = 364 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/330 (33%), Positives = 178/330 (53%), Gaps = 27/330 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+ Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI V+ Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEVEI 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E + A++ R + LK+A S D + S IT ++ V R Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRL----NGLQEH-------SPMRIILDPHFKLSLDSKI 236 A+S A+L TV+ D+ L R + +++H P+R+ILD +L + K+ Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEG 294 +T VL +A +I + + DL L+ L + + VE Sbjct: 241 FQTPT------------SVLRVAEASADIEVGTTEAGQLDLHDLMRQLPANHIDHIWVEA 288 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A S I ++LVD +ILY + ++G G Sbjct: 289 GATLAKSLIEAQLVDELILYLAPKLMGSDG 318 >gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758] gi|225206725|gb|EEG89079.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758] Length = 370 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 42/376 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKDGSIIGEGYHEKCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ +VSG+G + L + G+ V Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGVRV 122 Query: 127 DRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + E +F H Y+T + ++ +K A++ D I S I+G +++ Sbjct: 123 EEDFLREECDALNPVFFH-YITTGL---PYVVMKYAMTADGKIATKTGASKWISGEEARS 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R AI+ GIGTVLADDP L RL G + SP+RII D ++ LDS+I +TA Sbjct: 179 LVHEMRHDYMAIMAGIGTVLADDPMLNVRLEG--KKSPVRIICDSMLRIPLDSQICQTAG 236 Query: 242 LAPVIIVTENDDP------------------VLALAFRKKNINIIYCDCRDLKKLLTILV 283 I+ + +L++ K IN L+ L+ L Sbjct: 237 RYRTIVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEIN--------LQLLMRKLG 288 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NF 338 G+ S+L+EGG + + S +V+ + + + + G G +P+E +EK Sbjct: 289 ELGIDSVLIEGGGTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFGVEKVDDAIKL 348 Query: 339 MCVRRDYFGSDVCLEY 354 +R G D+ EY Sbjct: 349 QLMRISQVGEDILAEY 364 >gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Candidatus Blochmannia floridanus] gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Candidatus Blochmannia floridanus] Length = 378 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/337 (35%), Positives = 172/337 (51%), Gaps = 19/337 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++S A R +R T NP+V C+IVK+ VIG G G HAE+ AL AG+ Sbjct: 10 DLIYLSRAFRLARKGRFTTMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIAGDS 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSHYGR+PPC +I GI+ VV+ + DPD + GRG++ L + GI+V Sbjct: 70 ARGATVYVTLEPCSHYGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGILV 129 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + ++ R I +K+A S D M S IT S+ V Sbjct: 130 RHSLMLSEAEHINKGFIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDVQC 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCR---------LNGLQEH--SPMRIILDPHFKLSLDS 234 RA+SD IL T+L D+P L R L +EH P+R+I+D ++ Sbjct: 190 FRAESDVILSTATTILIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLPTH 249 Query: 235 KIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTS 289 + I+ + VI+V D P IN++ +L+ L+ L R + + Sbjct: 250 RFIQNS--GKVILVRLKKDNLNWPESVEQLLAPEINLVGSYQINLEALMKYLGYVRKINN 307 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + VE G ++ S ++ LVD +ILY+S +G P Sbjct: 308 VWVEAGPTLSGSLLDIGLVDELILYQSIKFLGSNAKP 344 >gi|193076093|gb|ABO10696.2| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978] Length = 361 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/331 (35%), Positives = 181/331 (54%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL EAGE Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFALREAGEH 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ DD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIDTVIVDD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +LVE Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ LVD +I Y + ++G+ Sbjct: 291 AGATLSTAFLQEGLVDEMISYVAPTLLGQSA 321 >gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411] gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411] Length = 375 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 108/329 (32%), Positives = 174/329 (52%), Gaps = 10/329 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V + D FM A+ ++ T NP V +IVK+G +IG+G G PHAEV+A+ Sbjct: 12 VMNKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKEGKIIGQGYHKKAGLPHAEVEAINS 71 Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + + AT YV LEPC+HYGR+PPC+ II GI+RVV+ + D + + SG G++ L Sbjct: 72 VKDRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDINKKASG-GIERLK 130 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++E E K ++ + ++ +K A+ + I + G S IT + Sbjct: 131 GAGIDVKVGVLEDEAKKLNEVFIENTLNRKPFFIMKAAMLLNGCIAVKGGVSQWITSEKA 190 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR + A+LVGI T++ DDP LTCR+ G ++ P R++LD + K+ + +KI Sbjct: 191 RRFSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGYRQ--PKRVVLDMNLKIPISAKIFSE 248 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295 II ++N D R ++NI+ CD + + L L+ + S +VEGG Sbjct: 249 YPNNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEFNPADLSEKLLENEICSCIVEGG 308 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + F+ ++L + L + + G G Sbjct: 309 SRTHGYFLKNKLYNKAYLLYAPKITGSYG 337 >gi|184156566|ref|YP_001844905.1| pyrimidine deaminase [Acinetobacter baumannii ACICU] gi|332874950|ref|ZP_08442801.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6014059] gi|183208160|gb|ACC55558.1| Pyrimidine deaminase [Acinetobacter baumannii ACICU] gi|322506453|gb|ADX01907.1| ribD [Acinetobacter baumannii 1656-2] gi|323516332|gb|ADX90713.1| pyrimidine deaminase [Acinetobacter baumannii TCDC-AB0715] gi|332736893|gb|EGJ67869.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6014059] Length = 361 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 117/331 (35%), Positives = 183/331 (55%), Gaps = 29/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL +AGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E +L ++ LK+A S D MA S ITG ++ V Sbjct: 127 EIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQH 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKII 237 RA S A++ GI TV+ADD C+LN H+ P R+ILD +L L +KI+ Sbjct: 187 WRAISGAVITGIETVIADD----CQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAKIL 242 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVE 293 EN + V+ + +R++ ++ +I + + LK LL L + + +L+E Sbjct: 243 ------------ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLIE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA ++ +F+ L+D +I Y + ++G+ Sbjct: 291 AGATLSSAFLQEGLIDEMISYVAPTLLGQSA 321 >gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122] Length = 365 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 165/327 (50%), Gaps = 22/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D MS AL+ + T+ NP V C+IVKDG+V+G G G PHAEV AL+ A E Sbjct: 6 DHTHMSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQAAKER 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GAT YVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ VSGRG+Q L GI V Sbjct: 66 AIGATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSAGIEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D ++E + A++ + LK+A S D + S IT ++ V Sbjct: 126 DVGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQDVQA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TV+ D+ LT R + L P R+ILD L+ D Sbjct: 186 FRAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYPEKALRQPPRVILDRKQTLTSDL 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + ++ + II+ +++ L + K+ L T+ + L VE Sbjct: 246 RFFQSQ--SESIIIAPSNEHFDELDWSKQ--------LELLPIFKTLAKTYSINHLWVEA 295 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 GA ++ S I LVD +ILY + ++G Sbjct: 296 GATLSRSLIREGLVDELILYIAPKLMG 322 >gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184] gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184] Length = 373 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 119/330 (36%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ +E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P RI++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D + A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREHCVDELLVYLAPSLLG 327 >gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627] gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627] Length = 361 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 130/367 (35%), Positives = 190/367 (51%), Gaps = 28/367 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL A E+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R ++ LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E + P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E+ + V L + N ++ DL L+ L + + S+ VE Sbjct: 241 QPGETWFARTQEDSRHWPETVRTLLIPEYNGHL------DLVMLMMQLGKQQINSIWVEA 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 295 GPTLAGALLLAGLVDELIVYIAPKLLGSEARGLCTLPG-LEKLADAPQFKFKEIRHVGPD 353 Query: 350 VCLEYIG 356 VCL +G Sbjct: 354 VCLHLVG 360 >gi|322834072|ref|YP_004214099.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602] gi|321169273|gb|ADW74972.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602] Length = 378 Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 118/332 (35%), Positives = 175/332 (52%), Gaps = 18/332 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV +G ++G G G PHAEV AL AGE+ Sbjct: 13 DEHYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMAGEK 72 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G+ V Sbjct: 73 AKGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPEVAGRGLYRLKQNGVDV 132 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + +L R ++ LK+ S D MA S IT ++ V Sbjct: 133 SHGLMHPQAEAVNLGFLKRMRTGFPYVQLKMGASLDGRTAMASGESQWITSAAARADVQR 192 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLDS 234 RA+S AIL TVLAD+P L R + L P+R+ILD +++ Sbjct: 193 FRAESSAILSTSATVLADNPSLNVRWSELGSEVQAIYPEENLRQPLRVILDSQNRVTPQH 252 Query: 235 KIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +++ L V + E D V + + + D R DL L+ L R + S+ V Sbjct: 253 QVVN--LPGEVWLARLEADTQVWPGSVEQ--WRVAGRDNRIDLVLLMMQLAKRQINSIWV 308 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 E GA +A + + + LVD +I+Y + ++G+ G Sbjct: 309 EAGAQLAGALLQAGLVDELIVYMAPKLLGDNG 340 >gi|218264485|ref|ZP_03478318.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii DSM 18315] gi|218221978|gb|EEC94628.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 181/337 (53%), Gaps = 20/337 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +E Sbjct: 11 EEKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDE 70 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ II+ GI RVVV DP VSGRG++ L + G+ Sbjct: 71 ALLRDSTIYVSLEPCSHYGKTPPCAELIIKKGIPRVVVGTLDPFPEVSGRGVRMLREAGV 130 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFIS 179 +V ++E E + A++T Q+ KR ++ LK A S D + + A V ++ + Sbjct: 131 EVVTGVLEEEARTLNPAFMTFQIRKRPYVYLKWAQSADGFMDVRREDATESPVLLSSAET 190 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +VH LR++ AI+VG T L D+P LT R Q SP+R++LD KL S ++ Sbjct: 191 LRRVHRLRSEVAAIMVGTRTALLDNPSLTVRHWAGQ--SPVRVVLDRTLKLPAGSHLLDG 248 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + V E + + N+ + D L ++L L + + SL+VEGGA Sbjct: 249 MVRTLVFTAAEVES--------RPNVEYVRIDFEQEVLPQVLQYLYEQNLNSLMVEGGAG 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + SF+++ L D + + V+G G+ +P G L Sbjct: 301 LLESFLDAGLWDEAWVETAPAVLG-AGVKAPAVPGVL 336 >gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC 25196] gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira multiformis ATCC 25196] Length = 366 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 175/324 (54%), Gaps = 9/324 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D RFM+ ALR + + TS NP V C++V+DG V+G G G HAE+ AL A Sbjct: 3 SPTDYRFMAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ARGA AY+TLEPCSHYGR+PPCA +++ G+ +V+ + DP+ V+GRG L + G Sbjct: 63 GPAARGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +ME+E K +++R R + +KIA S D + S IT ++ Sbjct: 123 IEVKTGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S A++ GIGTVLADDP+LT R + PM +++D + LD+ +++ Sbjct: 183 GHRWRARSCAVMTGIGTVLADDPQLTVR-HIHTSRQPMPVVVDRGLDIPLDAGLLRG--- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 A ++ T +A R ++I DL ++ L + +LVE G+ + Sbjct: 239 AGELVFTAAASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSGL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322 I + LVD ++Y + +IG Sbjct: 299 NGGLIQADLVDEFVIYLAPCLIGN 322 >gi|118496729|ref|YP_897779.1| pyrimidine reductase/pyrimidine deaminase [Francisella tularensis subsp. novicida U112] gi|194324036|ref|ZP_03057811.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. novicida FTE] gi|208780000|ref|ZP_03247343.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG] gi|118422635|gb|ABK89025.1| pyrimidine reductase/pyrimidine deaminase [Francisella novicida U112] gi|194321933|gb|EDX19416.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. novicida FTE] gi|208744004|gb|EDZ90305.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG] Length = 355 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 175/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293 A I V +A + I + L L+ + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|254372095|ref|ZP_04987588.1| hypothetical protein FTCG_01236 [Francisella tularensis subsp. novicida GA99-3549] gi|151569826|gb|EDN35480.1| hypothetical protein FTCG_01236 [Francisella novicida GA99-3549] Length = 355 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 A I V +A + I L LL + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|258424182|ref|ZP_05687064.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635] gi|257845803|gb|EEV69835.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635] Length = 347 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLNTHGD--ETLRDHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|254375242|ref|ZP_04990722.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548] gi|151572960|gb|EDN38614.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548] Length = 355 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 177/351 (50%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCRD---LKKLLTILVGRGVTSLLVE 293 A I V +A + I ++ + L LL + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLFPQSQHQVCLDTLLEKMGNIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum H10] gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum H10] Length = 367 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 117/361 (32%), Positives = 195/361 (54%), Gaps = 23/361 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L ++ G T+ NP V +I K+G +I G GC HAEV A A + G Sbjct: 7 YMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFHEALGCAHAEVCAFSNAPTDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YV LEPCSHYGR+PPC + II+ GI+ VVV + DP+ +VSG+G+Q L I ++ Sbjct: 67 ATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANINVIVG 126 Query: 129 MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E K IF+H Y+T+++ + +K A++ D I S I+G S+ VH Sbjct: 127 VLEEEAKKLNEIFIH-YITKRL---PFVIMKTAMTLDGKIASVTGDSKWISGEYSREYVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + +I+VG+ TV+ D+P LT R + P+RI++D ++ ++S++I++ A Sbjct: 183 AIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVDSSGRIPIESRVIQSDSEAG 242 Query: 245 VIIVTE---NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I+ T + D L R + II + +L++L+ L + S+L+EGG Sbjct: 243 LILATTEKIHKDKETQLLSR--GVRIIKTAPKNGKVNLRELMEELYKLEIDSVLLEGGGT 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + S + + +V+ ++ + S +IG +P+ +EK +R + F DV + Sbjct: 301 LNFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDAIALSDIRVERFDRDVLI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sodalis glossinidius str. 'morsitans'] gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str. 'morsitans'] Length = 375 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 125/338 (36%), Positives = 174/338 (51%), Gaps = 22/338 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ A +R T+ NP+V C+IV+DG ++G G G HAEV AL +AG Sbjct: 4 DEVYLARAFELARRGRFTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQAGNA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AR ATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRG L Q GI V Sbjct: 64 ARCATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGIEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+A S D MA S IT ++ V Sbjct: 124 RHGLMLPEAEAVNPGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILD------PHF 228 RA+SDAIL TVLADDP LT R L E P+R+I+D P Sbjct: 184 WRAESDAILSTATTVLADDPALTVRWASLPEDVQALYPEERLRQPVRVIIDRANSVTPSH 243 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ + A LAP + + L L + N + DL L+ L R + Sbjct: 244 WVAQGVGLTWLARLAPDDLTWPSSVEQLLLPA-GEGANAAHL---DLVALMMQLGRRQIN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 SL VE GA +A + + + LVD +ILY++ ++G P Sbjct: 300 SLWVEAGAGLAGALLGAGLVDELILYQAPKLLGADARP 337 >gi|262405149|ref|ZP_06081699.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22] gi|262356024|gb|EEZ05114.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22] Length = 351 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 182/353 (51%), Gaps = 27/353 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T R ITLK A S D+ I + PI + ++ Sbjct: 129 EVSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---------LEEGYLEKNFMCVRR 343 SFI++ L D + + + GI +P +EE + + + VRR Sbjct: 299 QSFIDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQIWHYVRR 350 >gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 383 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 117/339 (34%), Positives = 175/339 (51%), Gaps = 17/339 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ + G TS P+V +IV+D VIGRG T+ PHAE+ AL EAG Sbjct: 3 DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDNRVIGRGATSPPYGPHAEIHALNEAGAT 62 Query: 67 A-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA Y TLEPC +PPC + II GIRRV++ DP+ RVSGRG+ L + GI Sbjct: 63 AASGADLYTTLEPCCIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAGIN 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + + E + + T + R ++T K A++ D + + I+G ++ VH Sbjct: 123 VVTGIAQQETSALIRPFATYITQGRPYVTAKWAMTLDGKLATHTGDAHWISGPAARTWVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKII 237 LR + DAI++G GT AD+P LT RL Q P+RI+L + KL ++ Sbjct: 183 QLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKRTPRQDPLRIVLSSYGKLGSHLHLL 242 Query: 238 KTALLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSL 290 + LAP ++V+E R++ + +I DL L IL +G+ L Sbjct: 243 QEQ-LAPGTCVMVSETSSLQQREDLRQRGVQVIEVPANKTGQVDLVAALNILAQKGIMHL 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 L+EGG+ + + L+D + + + +IG G PSP+ Sbjct: 302 LLEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPSPI 340 >gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina MBIC11017] gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina MBIC11017] Length = 387 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/368 (31%), Positives = 194/368 (52%), Gaps = 16/368 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + M L+ ++ G T+ NP V C+I +DG ++G G G PHAEV AL Sbjct: 19 IDPHHQQMMQRCLQLAQKAAGFTTPNPLVGCVIERDGEIVGEGYHPKAGEPHAEVFALRA 78 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYV+LEPC+H+GR+PPC++ +++ G+ VVV + DPD RVSG+G++ L Sbjct: 79 AGDKAKGATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRAA 138 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + E++ + A++ R + +R LK A++ D I S IT +++ Sbjct: 139 GIQVITGVEEADCQRVNEAFVHRILYQRPFGILKYAMTLDGKIATTAGHSAWITKEVARA 198 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKIIK 238 VH LRA DA++VG TV D+P LT ++P+R++L L + + + Sbjct: 199 HVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVVLSRTLDLPPTAHLWE 258 Query: 239 TALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T +AP I++T+ A+ ++ + ++ D ++ L + + S+L E G Sbjct: 259 TD-IAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLGKKELLSVLWECGGT 317 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-------VRRDYFGSDV 350 ++ I V ++ + + ++G PSP+ G L N M VR G D Sbjct: 318 LSARAIADGSVQKVLAFIAPKIVGGQNAPSPV--GDLGFNKMTEALQLERVRWHIVGEDC 375 Query: 351 CLE-YIGK 357 +E Y+ K Sbjct: 376 LVEGYLPK 383 >gi|55981033|ref|YP_144330.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Thermus thermophilus HB8] gi|55772446|dbj|BAD70887.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Thermus thermophilus HB8] Length = 377 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 113/376 (30%), Positives = 188/376 (50%), Gaps = 29/376 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL++ Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALQQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + G GL+ L Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKG-GLERLRAG 119 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++E+E + + Q + + LK A++ D + + I+ S+ Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239 Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283 +++ + ++ V E A + ++ D ++ L L+ Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARVVALPREGGRVDPERALAFLL 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-----N 337 GV +L+EGG +A +F+ LVD + L+ + ++GEG L EG+ +E+ Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEG---RGLAEGFRVERVAEALR 356 Query: 338 FMCVRRDYFGSDVCLE 353 RR++ G ++ LE Sbjct: 357 LRLARREWLGENLWLE 372 >gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Coprococcus catus GD/7] Length = 371 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 125/362 (34%), Positives = 198/362 (54%), Gaps = 13/362 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-E 65 D R+M AL ++ G T+ NP V +IVKDG VI +G G HAEV+A ++AG + Sbjct: 8 DLRYMQMALDMAKLGRGYTNPNPMVGAVIVKDGQVIAKGYHHCCGQGHAEVEAFKDAGNQ 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GAT YVTLEPCSHYG++PPCA IIE I RVVV DP+ V+GRG++ + GI Sbjct: 68 DVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEKIRNAGIE 127 Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + +E I L+ ++ V K + K A+S D I S I+ S+ +VH Sbjct: 128 VTTGVLAEESIKLNEIFMKYIVNKEPFVLYKSAMSLDGKIATVSGESQWISCEASRKEVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL-LA 243 LR Q AI+VG TVL DDP L CRL ++ P+R+++D ++ + ++++KTA + Sbjct: 188 ELRHQYMAIMVGSQTVLDDDPMLNCRL--IEGKDPIRVVVDSSLRIPMTARLVKTARDIR 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T + D + + ++ + + DLKKL L + S+L+EGGAA+A Sbjct: 246 TIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKKLTEELGRMQIDSILLEGGAALA 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 + + ++D + +Y + +IG +P+ +E + + D+ IG ++ Sbjct: 306 AAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEH----LSDAWQLKDITARNIGNDI 361 Query: 360 CL 361 C+ Sbjct: 362 CI 363 >gi|293371696|ref|ZP_06618107.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f] gi|292633393|gb|EFF51963.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f] Length = 351 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/351 (34%), Positives = 181/351 (51%), Gaps = 22/351 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 9 EEKYMKRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKHSTIYVSLEPCSHYGKTPPCANLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 129 EVTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVSLSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLL 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI++ L D + + G + S ++ ++ NF ++F + Sbjct: 299 QSFIDNELWDEAYIEKC-----PGRLHSGVKAPQMDDNFSYSIEEHFERQI 344 >gi|237715308|ref|ZP_04545789.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1] gi|294643551|ref|ZP_06721357.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a] gi|294807058|ref|ZP_06765877.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD CC 1b] gi|229444617|gb|EEO50408.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1] gi|292641126|gb|EFF59338.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a] gi|294445757|gb|EFG14405.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD CC 1b] Length = 345 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 124/353 (35%), Positives = 182/353 (51%), Gaps = 27/353 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 3 EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDE 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T R ITLK A S D+ I + PI + ++ Sbjct: 123 EVSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I + Sbjct: 183 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGNV 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 241 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 292 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---------LEEGYLEKNFMCVRR 343 SFI++ L D + + + GI +P +EE + + + VRR Sbjct: 293 QSFIDNELWDEAYIEKCPSRL-HSGIKAPQMDDNFSYSIEEHFERQIWHYVRR 344 >gi|311739500|ref|ZP_07713335.1| riboflavin biosynthesis protein RibD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305316|gb|EFQ81384.1| riboflavin biosynthesis protein RibD [Corynebacterium pseudogenitalium ATCC 33035] Length = 340 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 177/340 (52%), Gaps = 33/340 (9%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +IV G ++G G T G HAEV AL EAG++ARGATA VTLEPC+H Sbjct: 26 GTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGATAVVTLEPCAH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHA 140 GR+ PCAQ +I+ G+ RV DP + +G G + L++ G+ V ++ + + L Sbjct: 86 TGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLARAGVDVAKLEKPPHAEDALVP 144 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L +R H+TLK A + D A S ITG +++ VH RA DAI+VG GT Sbjct: 145 WLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRDAIVVGTGTA 204 Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LAD+P LT RL+ L+ H P R+++ K L+S + L Sbjct: 205 LADNPSLTARLSDGSLRAHQPRRVVIG---KRDLESAGDAASHLR--------------- 246 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + Y +++ L L G +LVEGGA +A SF+ + LVD+I Y + + Sbjct: 247 -------ELGYEQYDSIEEALYELYATGARDVLVEGGAGLASSFLKADLVDAISAYIAPL 299 Query: 319 VIGEGG--IPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYI 355 ++GEG + P+ + E F V G DV +EY+ Sbjct: 300 LLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYV 339 >gi|330943560|gb|EGH45897.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. pisi str. 1704B] Length = 245 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 98/212 (46%), Positives = 129/212 (60%), Gaps = 1/212 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 V LRAQS +L G TVLAD LT R + L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRPDEL 217 >gi|46199007|ref|YP_004674.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Thermus thermophilus HB27] gi|46196631|gb|AAS81047.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Thermus thermophilus HB27] Length = 377 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/376 (30%), Positives = 187/376 (49%), Gaps = 29/376 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL E Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALRE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + G GL+ L Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENPVAKG-GLERLRVG 119 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++E+E + + Q + + LK A++ D + + I+ S+ Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239 Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283 +++ + ++ V E A + ++ D ++ L L+ Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPRARVSALEEAGARVVALPREGGRVDPERALAFLL 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-----N 337 GV +L+EGG +A +F+ LVD + L+ + ++GEG L EG+ +E+ Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEG---RGLAEGFRVERVAEALR 356 Query: 338 FMCVRRDYFGSDVCLE 353 RR++ G ++ LE Sbjct: 357 LRLARREWLGENLWLE 372 >gi|221140247|ref|ZP_03564740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus str. JKD6009] Length = 347 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 109/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|15644572|ref|NP_229625.1| riboflavin-specific deaminase [Thermotoga maritima MSB8] gi|148270243|ref|YP_001244703.1| riboflavin biosynthesis protein RibD [Thermotoga petrophila RKU-1] gi|281412422|ref|YP_003346501.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila RKU-10] gi|4982410|gb|AAD36891.1|AE001819_14 riboflavin-specific deaminase [Thermotoga maritima MSB8] gi|147735787|gb|ABQ47127.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thermotoga petrophila RKU-1] gi|281373525|gb|ADA67087.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila RKU-10] Length = 348 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 117/319 (36%), Positives = 176/319 (55%), Gaps = 19/319 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A GE+ Sbjct: 5 FMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGED 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI + Sbjct: 65 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E E K ++T +KR + LK A + D I S IT + + +VH Sbjct: 124 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244 +R A+LVG GTVL D+P+LTCRL + +P+R+ILD K L K+ + A Sbjct: 183 MRNIYSAVLVGAGTVLKDNPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 VI+ TE+++ A ++ DC ++ +L L R + S+LVEGG+ V F++ Sbjct: 239 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 292 Query: 305 SRLVDSIILYRSQIVIGEG 323 D + + S + G+G Sbjct: 293 H--ADVVFGFYSTKIFGKG 309 >gi|289427738|ref|ZP_06429450.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165] gi|289159229|gb|EFD07421.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165] gi|313808724|gb|EFS47178.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA2] gi|313817904|gb|EFS55618.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL046PA2] gi|313819816|gb|EFS57530.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA1] gi|313823306|gb|EFS61020.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA2] gi|313824948|gb|EFS62662.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL063PA1] gi|314925876|gb|EFS89707.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA3] gi|314960753|gb|EFT04854.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA2] gi|314979409|gb|EFT23503.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL072PA2] gi|314986170|gb|EFT30262.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA2] gi|314988782|gb|EFT32873.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA3] gi|315083284|gb|EFT55260.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL027PA2] gi|315086943|gb|EFT58919.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA3] gi|315089869|gb|EFT61845.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL072PA1] gi|327325060|gb|EGE66866.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL096PA3] gi|327449258|gb|EGE95912.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL013PA2] gi|328756397|gb|EGF70013.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL020PA1] Length = 331 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ RGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294 >gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio coralliilyticus ATCC BAA-450] gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio coralliilyticus ATCC BAA-450] Length = 368 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 116/331 (35%), Positives = 171/331 (51%), Gaps = 24/331 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D + MS A+ ++ + T+ NP+V C+I D ++G G G PHAEV AL AG++ Sbjct: 8 DYQMMSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHALRMAGDK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG++ L GI V Sbjct: 68 SVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKMLCDAGIEV 127 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ES+ A++ R + LK+A S D ++ S IT ++ V Sbjct: 128 QVGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQARQDVQN 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQ+ AIL TV+ D+ L R L E P+R++LD +LS + Sbjct: 188 YRAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLPESEVRQPVRVVLDRQQQLSSEL 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVE 293 K T I+V+ D V L + I DLK LV + L VE Sbjct: 248 KFYSTD--GERIVVSAQGD-VAPLLNDSEQI--------DLKSTFANLVSHHNINHLWVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 GA +A S I LVD +ILY + ++G G Sbjct: 297 AGATLASSLIKEGLVDELILYLAPKIMGSDG 327 >gi|221135084|ref|ZP_03561387.1| riboflavin biosynthesis protein RibD [Glaciecola sp. HTCC2999] Length = 381 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 119/344 (34%), Positives = 179/344 (52%), Gaps = 38/344 (11%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+FD M+ ALR ++ + + NP V C+I DG +IG G G HAEV AL + Sbjct: 6 SAFDYAMMARALRLAKQGIYTAAPNPMVGCVITLDGEIIGEGHHQQAGTAHAEVNALWQV 65 Query: 64 GE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 E + + ATAYVTLEPCSH GR+ PCA +I+ I RVV+ + DP +VSG Sbjct: 66 NELIAQGKLVATQLKEATAYVTLEPCSHTGRTGPCADALIDAYIGRVVIAMQDPYSQVSG 125 Query: 114 RGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 RG+ L + I V+ ++ +E +L+ +R +T K+A S D I + S Sbjct: 126 RGIAKLQRANIQVEVGLLAAESNALNRHFLSLVERQRPFVTAKLATSLDGKIALDNGVSQ 185 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--------------S 218 ITG ++ V RAQ IL G TV+ADDP+L RL L E+ Sbjct: 186 WITGPEARQDVQAHRAQHMCILTGSQTVIADDPQLNVRLAELPENVQQTLAANPLAQYTQ 245 Query: 219 PMRIILDPHFKLSLDSKIIKTA-LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277 P+R I+D +S +I++ A AP + T ++ P+ N N C DL Sbjct: 246 PLRAIIDSQRLISEQYQIVRDANTQAPTHVFTPDNIPL--------NGN---GKC-DLSA 293 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +L L +G+ S+ VE GA + + +N+RL+D +I+Y++ +++G Sbjct: 294 VLDALGQQGINSVWVEAGAGLVGAMLNARLLDELIIYQAPLLLG 337 >gi|328675280|gb|AEB27955.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Francisella cf. novicida 3523] Length = 355 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 170/334 (50%), Gaps = 23/334 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALSLANRGRLTVSPNPMVGCIIVKNGTIISEGWHETVGKAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GAT YVTLEPC H+GR+PPC +I+ GI++VV+ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATVYVTLEPCCHHGRTPPCTDTLIKAGIKKVVIATLDPNPKVAGKGVKKLKDA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D + + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQKTKKPFVYAKWAMSLDGKVAVNNDDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL------S 231 + H LR DAIL+G T+ D+P L R+N + P R IL H Sbjct: 177 QAFINTHQLRNICDAILIGKQTLTDDNPSLDVRININKIKHPTRFILSNHLTTINHNWQV 236 Query: 232 LDSKIIKTALLAPVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 LD KT + I I T+ + + ++ N + C L LL + G+T Sbjct: 237 LDQSHAKTIFICSKISAQIATKLNQLGIEYWLLPQSQNQV-C----LNTLLEKMGNIGIT 291 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 SLLVEGG+ +SFIN +LV+ Y + ++I + Sbjct: 292 SLLVEGGSKTLNSFINQKLVNEFYTYLAPVIIAD 325 >gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591] gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591] Length = 370 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 121/333 (36%), Positives = 175/333 (52%), Gaps = 24/333 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 66 AHGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125 Query: 127 DR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +ME KI +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 HHGVLMEQAEKIN-RGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E + P+R+I+D +++ Sbjct: 185 RFRAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQ 244 Query: 234 SKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 ++ + ++D D V L I DL L+ L R + + Sbjct: 245 HCLVNQPGQTWLARARQDDQSWPDGVEQLEMPLHGGGI------DLVGLMMTLGKRQINT 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + VE G +A + + + +VD +I+Y + ++G+ Sbjct: 299 VWVEAGPRLAGALLQAGVVDELIVYLAPKLLGD 331 >gi|71892014|ref|YP_277744.1| pyrimidine deaminase/reductase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796120|gb|AAZ40871.1| pyrimidine deaminase/reductase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 379 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/337 (35%), Positives = 170/337 (50%), Gaps = 20/337 (5%) Query: 7 DARFMSAALRFSRWHVGLTST-NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D RF++ AL+ + W T+ NP+V C+IV++ +IG G G HAE+ AL AG Sbjct: 9 DKRFLTRALQLA-WKGRFTTMPNPNVGCVIVRNNKIIGEGYHIRAGEAHAEIHALRIAGN 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A+GATAY+TLEPCSHYGR+PPC +I GI+RVVV + DP GRGL L Q GI Sbjct: 68 LAQGATAYITLEPCSHYGRTPPCTTALINAGIKRVVVAMLDPHFYARGRGLHLLQQAGIE 127 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +M E + +L R + LK+A S D M+ S IT ++ V Sbjct: 128 VQHSLMLPEAESINRGFLKRIRTGFPWVKLKLAASLDGRTAMSSGESKWITSIQARQDVP 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233 RA+SD IL GTVLADDP+L R Q P+R+I+D ++ Sbjct: 188 RFRAESDVILSTAGTVLADDPKLNVRWECFSDEMKRIYANNQIRQPLRVIIDSANRVLPT 247 Query: 234 SKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 ++I+ +++V D P +IN +L +L+ L R + + Sbjct: 248 HRVIRYE--GKILLVRLKKDHRNWPSSVEQLLLSSINCHGHHRINLTELMQHLGYREINN 305 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + VE GA + ++ LVD +ILY++ +G P Sbjct: 306 IWVEAGATFSGVLLDIGLVDELILYQAIKFLGSDARP 342 >gi|283471035|emb|CAQ50246.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ST398] Length = 347 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|295131277|ref|YP_003581940.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK137] gi|291375861|gb|ADD99715.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK137] gi|313773159|gb|EFS39125.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL074PA1] gi|313810307|gb|EFS48023.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL083PA1] gi|313830202|gb|EFS67916.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL007PA1] gi|313833124|gb|EFS70838.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL056PA1] gi|314972940|gb|EFT17036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL053PA1] gi|314975459|gb|EFT19554.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL045PA1] gi|314984254|gb|EFT28346.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA1] gi|315096643|gb|EFT68619.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL038PA1] gi|327325313|gb|EGE67118.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL096PA2] gi|327443828|gb|EGE90482.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL043PA1] gi|327449140|gb|EGE95794.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL043PA2] gi|328761071|gb|EGF74621.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL099PA1] Length = 331 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S IT +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITAEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 204 LTVRLPGV-THQPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 294 >gi|330685448|gb|EGG97103.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU121] Length = 347 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 164/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA Sbjct: 2 SKFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI++V+ V D + +G L GI V+ Sbjct: 62 KGATIYVSLEPCTHHGSTPPCVDKIIEAGIQKVIYAV--KDTTLISKGDDILKNAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + T + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKDVKKDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA+L G T+ ADDP T R+ + P+R+IL KL ++ +P+ I Sbjct: 180 HSHDAVLTGRKTIEADDPLYTTRIADGKH--PIRVILSKSGKLDFGQQLFHDN-ASPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L N+ IIY + ++K +L L +G+ LLVE G + F+ S Sbjct: 237 YTENKN----LTVDNSNVTIIYMEQCEIKSILKDLYHKGIGKLLVEAGPEITSEFLQSDH 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ++LY + +IG G Sbjct: 293 LDHLVLYFAPKIIGGSG 309 >gi|332676151|gb|AEE72967.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes 266] Length = 323 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 109/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++ RGATA VTLEPC H GR+ P Sbjct: 17 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTGP 76 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 77 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 135 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 136 HRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 195 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ H P+R+++ +P R + + Sbjct: 196 LTVRLPGVT-HQPLRVVVG-------------------------MREPPAGCHLRDDSAS 229 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 230 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGG 286 >gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM 2782] gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM 2782] Length = 367 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 122/359 (33%), Positives = 193/359 (53%), Gaps = 19/359 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M A S+ G T+ NP V +IVKDG +I G G HAEV A + A + G Sbjct: 7 YMKRAFEISKGGWGRTNPNPLVGAVIVKDGEIISEGFHEALGGAHAEVCAFQNATSDISG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YV LEPCSHYGR+PPCA+ I E GI+ VVV + DP+ +VSG+G+Q L I ++ Sbjct: 67 ATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANINVIVG 126 Query: 129 MMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E + IF+H Y+T+Q+ + +K A++ D I S I+ S+ VH Sbjct: 127 VLEEEARRLNEIFIH-YITKQL---PFVIMKTAMTLDGKIASVTGDSRWISSEPSREYVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + +I+VG+ T++ D+P LT R + P+RI++D ++ +DS++I A Sbjct: 183 KIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVDSRGRIPMDSRVINGDSNAG 242 Query: 245 VIIVTE---NDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +I+ T N D L R I I +L +L+ L + S+L+EGG + Sbjct: 243 LILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMRELYKLEIDSVLLEGGGNLN 302 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMC---VRRDYFGSDVCLE 353 S + + +V+ ++ + S +IG +P+ EG E K+ + +R + F DV +E Sbjct: 303 FSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDAIALSDIRVEGFDRDVLIE 361 >gi|328676184|gb|AEB27054.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Francisella cf. novicida Fx1] Length = 355 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 173/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYGKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLNVRININKIKHPTRFILANHLTTINHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 A I V +A + I L LL + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---KPKQQ--LSFNQISVRED 342 >gi|56696631|ref|YP_166992.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3] gi|56678368|gb|AAV95034.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3] Length = 364 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 134/362 (37%), Positives = 200/362 (55%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DAR+M+ AL R G+ NP+V C+IV +G ++GRG T GG PHAEV AL + Sbjct: 1 MSMSDARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++D D RV+G G + L + Sbjct: 61 AGGAARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + E L + + R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVSVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA+LVG GT +DDP LT R G+ + P+R+++ + L L S++ +TA Sbjct: 181 AVHAMRARHDAVLVGAGTARSDDPSLTVRDMGVAQQ-PVRVVVSRYLDLPLMSQLARTAR 239 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 PV + D A+ +I C LL L G+G+T + EGGA Sbjct: 240 QVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATDLLRQLGGQGLTRVFCEGGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 ++A S + + +VD ++ + + + IG G+P+ LE+ F + G+D+ Sbjct: 300 SLAASLLAADMVDELVGFTAGLAIGAEGLPAVGVLGLEQLSEAARFDLIETRAIGADILH 359 Query: 353 EY 354 + Sbjct: 360 RW 361 >gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix] gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix] Length = 396 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 123/354 (34%), Positives = 180/354 (50%), Gaps = 43/354 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M+ AL + NP V C++V++G V+G G+ G HAEV AL AGE Sbjct: 12 DRRHMARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+GR+PPC + +I+ G+ RVV+ + DP+ +V G G++ L GI V Sbjct: 72 ARGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEV 131 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E+E + ++ R + R + +K+A S D MA S ITG ++ V L Sbjct: 132 ETGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQL 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------------NGLQEHSPMRIILDPHF 228 RA++ AIL G GTV+ADDP LT RL + L P+R+ILD Sbjct: 192 WRARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARL 251 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR------------ 273 + ++I+K+ PV I+T D A R + + D R Sbjct: 252 RTPPGAQILKS---GPVWILTGPD------AARSPAADTLRGHGADVRPIALASDSPDGG 302 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 DL ++L L V L VE G +A + VD +LY++ +++G P Sbjct: 303 LDLGEVLAELARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARP 356 >gi|21283440|ref|NP_646528.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MW2] gi|49486593|ref|YP_043814.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207517|ref|ZP_06923953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911601|ref|ZP_07129045.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH70] gi|21204881|dbj|BAB95576.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MW2] gi|49245036|emb|CAG43497.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887853|gb|EFH26750.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887022|gb|EFK82223.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH70] Length = 347 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|57652067|ref|YP_186652.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus COL] gi|151221874|ref|YP_001332696.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus str. Newman] gi|161509986|ref|YP_001575645.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258450849|ref|ZP_05698907.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948] gi|262050319|ref|ZP_06023164.1| riboflavin specific deaminase [Staphylococcus aureus D30] gi|262053078|ref|ZP_06025250.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3] gi|284024817|ref|ZP_06379215.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus 132] gi|294849930|ref|ZP_06790669.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754] gi|304380637|ref|ZP_07363309.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286253|gb|AAW38347.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus COL] gi|150374674|dbj|BAF67934.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus str. Newman] gi|160368795|gb|ABX29766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861473|gb|EEV84276.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948] gi|259159032|gb|EEW44104.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3] gi|259161579|gb|EEW46176.1| riboflavin specific deaminase [Staphylococcus aureus D30] gi|269941247|emb|CBI49636.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus TW20] gi|294823269|gb|EFG39699.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754] gi|304340832|gb|EFM06760.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195936|gb|EFU26300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus CGS01] gi|329314447|gb|AEB88860.1| Riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus T0131] gi|329727002|gb|EGG63459.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21189] Length = 347 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Limnobacter sp. MED105] gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Limnobacter sp. MED105] Length = 377 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 177/338 (52%), Gaps = 23/338 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M AL + T+ NP V C+ V+DG+ I G A G HAEVQA+ ++ Sbjct: 5 SPTDEHWMQHALNLAWKGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIADS 64 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G G+TAYVTLEPC+H+GR+ PCA+ ++ G+ RVV V DP+ VSG+G+ L Sbjct: 65 RARGVSLAGSTAYVTLEPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAILQ 124 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + + +R +R + LK+A S D + + S ITG + Sbjct: 125 AAGIETAHGVLIEQARWINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGEAA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 + H LRAQ+ A+L GIGTV AD+P+L R G+ E P+++I+D ++S D+++++ Sbjct: 185 RLHGHHLRAQACAVLSGIGTVKADNPQLNVR--GIDTERQPLKVIVDSKLEISPDARLLQ 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-------------RDLKKLLTILVGR 285 + + +I TE P L NI + DL +LL L R Sbjct: 243 SGRV--LIAHTEPHRPGW-LTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQR 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G+ L +E G + SF+ + LVD I+ Y + +G G Sbjct: 300 GINELHLEAGFGLNGSFLQAGLVDEIVQYIAPRFLGPG 337 >gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / [Synechococcus sp. CB0205] Length = 371 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 109/300 (36%), Positives = 167/300 (55%), Gaps = 16/300 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 SS +M AL+ + G TS NP V C+++ + G ++G G G PHAEV AL + Sbjct: 14 SSAWRPWMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHALSQ 73 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+G TA V+LEPC H+GR+PPC++ +I G+RRVVV + DPD RV+G G+ L Sbjct: 74 AGERAQGGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQLQAA 133 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + E+E + +++ R R LK A+S D + S I+G ++ Sbjct: 134 GIEVISGVCEAEAQALNRSFIQRVQTGRPWGILKWAMSLDGRTALPNGASQWISGPPARA 193 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRAQ DA+LVG GTV AD+P LT R G + P+R++L L D+++ + Sbjct: 194 WVHQLRAQCDAVLVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRSLDLPQDTQLWDQS- 250 Query: 242 LAPVIIVTENDDPVLALAFRKKNIN------IIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 LA +++ + P A R++ ++ + +C+ + L +L RG +L E G Sbjct: 251 LAQTLVLHGSKAP----AERQQQLDRLGVEHLALPECQP-RAALELLAQRGCNQVLWECG 305 >gi|282927316|ref|ZP_06334937.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765] gi|282592080|gb|EFB97105.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765] Length = 347 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ ++ P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGKK--PIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|167626935|ref|YP_001677435.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596936|gb|ABZ86934.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 356 Score = 175 bits (444), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 171/337 (50%), Gaps = 31/337 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++ Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120 Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI I+ + + + KIF H Q ++ + K A+S D I + G S I+ Sbjct: 121 GIEVKVGILQKQAQEQNKIFFH----YQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSK 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-------DPHFKL 230 + H LR DAIL+G T++ D+P L R+ ++ P+R I+ D +K+ Sbjct: 177 EAFVDTHQLRNICDAILIGKQTLIDDNPGLDVRIQLSKKKHPVRFIISNNLSEVDKSWKV 236 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK------KLLTILVG 284 LD KT + I +A NI I Y K LL + Sbjct: 237 -LDQNHAKTIFVCSKISTQ--------VANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQ 287 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G+TSLLVEGG +FIN +L++ Y S +VI Sbjct: 288 TGITSLLVEGGKKTLENFINQKLINEFATYLSPVVIA 324 >gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP3-BS71] Length = 360 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 170/316 (53%), Gaps = 7/316 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + GA Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKSPVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + V + Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ + ++ +K A+S D I S IT ++ VH LR Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHY 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA I T Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++D ++ I+ + DL L+ L + SL++EGG+ + S + Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298 Query: 306 RLVDSIILYRSQIVIG 321 ++VD + +Y + + G Sbjct: 299 QIVDELKIYIAPKIFG 314 >gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiobacillus denitrificans ATCC 25259] gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5- phosphoribosylamino)uracil reductase oxidoreductase protein [Thiobacillus denitrificans ATCC 25259] Length = 359 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 12/327 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D+RFMS AL+ + + TS NP V C++VKD ++G G G PHAE+ AL Sbjct: 1 MRFTAADSRFMSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V+G G+ L+ Sbjct: 61 RAAGEAARGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLT 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +ME+E + +++R +R + LK A + D +A S ITG + Sbjct: 121 LAGIAAEVGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V LRA++ AIL G GTVLADDP + R + +P+R+++D + + I+ Sbjct: 181 RADVQRLRARACAILTGSGTVLADDPRMNVRDFDIG-RAPLRVVVDSTLRTPASAAIL-- 237 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGG 295 P ++ + P A +I D R DL LL +L RGV + VE G Sbjct: 238 ----PALVACRDASPATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAG 293 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE 322 AA+ + + + LVD + Y + + +G+ Sbjct: 294 AALNGALLAAGLVDEWVAYLAPLAVGD 320 >gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440] gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salinispora tropica CNB-440] Length = 353 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 121/329 (36%), Positives = 171/329 (51%), Gaps = 28/329 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ AL AGE ARG Sbjct: 10 MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVALAHAGERARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC+ +++ G+ RVV+ V DP+ SG G L G+ VD Sbjct: 70 GTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPNQAASG-GAATLRAAGVRVDLG 128 Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R E+E G I A+LT ++ K A + D A S+ IT ++ VH Sbjct: 129 VRAAEAEAGNI---AWLTSTRRGWPYLLWKYAATLDGRSAAADGTSMWITSEAARMDVHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR DA+L G+GTVLADDP LT R L P+R+++D + +++ A Sbjct: 186 LRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGQTPAGARVRDDA-- 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 AP I T ++ + DL LL L RGV + L+EGG +A +F Sbjct: 244 APTWIATADE------------VGTDSAGRVDLPALLAALHQRGVRAALLEGGPRLAGAF 291 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + + LVD I+ Y + ++G G P+ L + Sbjct: 292 LAAGLVDKIVGYVAPRLLGAG--PTALAD 318 >gi|330899666|gb|EGH31085.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 301 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 142/247 (57%), Gaps = 11/247 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ VV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTGVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ L Sbjct: 186 VQRLRAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVPL 245 Query: 233 DSKIIKT 239 D+ + Sbjct: 246 DAPFFQA 252 >gi|241667512|ref|ZP_04755090.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876058|ref|ZP_05248768.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842079|gb|EET20493.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 356 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 171/337 (50%), Gaps = 31/337 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++ Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120 Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI I+ + + + KIF H Q ++ + K A+S D I + G S I+ Sbjct: 121 GIEVKVGILQKQAQEQNKIFFH----YQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSN 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-------DPHFKL 230 + H LR DAIL+G T++ D+P L R+ ++ P+R I+ D +++ Sbjct: 177 EAFVDTHQLRNICDAILIGKQTLIDDNPSLDVRIQLSKKKHPVRFIISNNLSEVDKSWRV 236 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK------KLLTILVG 284 LD KT + I +A NI I Y K LL + Sbjct: 237 -LDQNHAKTIFVCSKISAQ--------VANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQ 287 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G+TSLLVEGG +FIN +L++ Y S +VI Sbjct: 288 TGITSLLVEGGKKTLENFINQKLINEFATYLSPVVIA 324 >gi|255325040|ref|ZP_05366146.1| riboflavin biosynthesis protein RibD [Corynebacterium tuberculostearicum SK141] gi|255297605|gb|EET76916.1| riboflavin biosynthesis protein RibD [Corynebacterium tuberculostearicum SK141] Length = 340 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 176/340 (51%), Gaps = 33/340 (9%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +IV G ++G G T G HAEV AL EAG++ARGATA VTLEPC+H Sbjct: 26 GTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGATAVVTLEPCAH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHA 140 GR+ PCAQ +I+ G+ RV DP + +G G + L+ G+ V ++ + + L Sbjct: 86 TGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLAGAGVDVAKLEKPPHAEDALVP 144 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L +R H+TLK A + D A S ITG +++ VH RA DAI+VG GT Sbjct: 145 WLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHRDAIVVGTGTA 204 Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LAD+P LT RL+ L+ H P R+++ K L+S + L Sbjct: 205 LADNPSLTARLSDGSLRAHQPRRVVIG---KRDLESAGDAASHLR--------------- 246 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + Y +++ L L G +LVEGGA +A SF+ + LVD+I Y + + Sbjct: 247 -------ELGYEQYDSIEEALYELYATGARDVLVEGGAGLASSFLKADLVDAISAYIAPL 299 Query: 319 VIGEGG--IPSPLEEGYLEKN-FMCVRRDYFGSDVCLEYI 355 ++GEG + P+ + E F V G DV +EY+ Sbjct: 300 LLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYV 339 >gi|320142810|gb|EFW34610.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MRSA177] Length = 357 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 12 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 71 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 72 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 129 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 130 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 189 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 190 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 246 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 247 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 302 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 303 IDEFILYYAPKLIGGSG 319 >gi|49484015|ref|YP_041239.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425881|ref|ZP_05602305.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428548|ref|ZP_05604946.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 65-1322] gi|257431182|ref|ZP_05607559.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433863|ref|ZP_05610221.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus E1410] gi|257436780|ref|ZP_05612824.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M876] gi|282904343|ref|ZP_06312231.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C160] gi|282906168|ref|ZP_06314023.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus Btn1260] gi|282909085|ref|ZP_06316903.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911393|ref|ZP_06319195.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914562|ref|ZP_06322348.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M899] gi|282919530|ref|ZP_06327265.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C427] gi|282924908|ref|ZP_06332574.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C101] gi|283958523|ref|ZP_06375974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus A017934/97] gi|293503640|ref|ZP_06667487.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 58-424] gi|293510656|ref|ZP_06669361.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M809] gi|293537197|ref|ZP_06671877.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M1015] gi|295428344|ref|ZP_06820973.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590692|ref|ZP_06949330.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MN8] gi|49242144|emb|CAG40844.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271575|gb|EEV03721.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275389|gb|EEV06876.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278130|gb|EEV08778.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281956|gb|EEV12093.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus E1410] gi|257284131|gb|EEV14254.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M876] gi|282313274|gb|EFB43670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C101] gi|282317340|gb|EFB47714.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C427] gi|282321743|gb|EFB52068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M899] gi|282325088|gb|EFB55398.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327349|gb|EFB57644.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331460|gb|EFB60974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus Btn1260] gi|282595961|gb|EFC00925.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C160] gi|283790672|gb|EFC29489.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus A017934/97] gi|290920042|gb|EFD97110.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M1015] gi|291095306|gb|EFE25571.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 58-424] gi|291466547|gb|EFF09068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M809] gi|295127744|gb|EFG57381.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575578|gb|EFH94294.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MN8] gi|312437774|gb|ADQ76845.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH60] gi|315195682|gb|EFU26069.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus CGS00] Length = 347 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 161/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + + GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETIRDHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRHTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDKFILYYAPKLIGGSG 309 >gi|253990958|ref|YP_003042314.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica] Length = 362 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 119/328 (36%), Positives = 174/328 (53%), Gaps = 22/328 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R TS NP+V C+IV+DG ++G G G PHAEV AL AG++A+G+ Sbjct: 1 MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMAGDKAKGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI V+ + Sbjct: 61 TAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVEHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M +E + +L R +I LK+A S D +A S IT S+ V LRAQ Sbjct: 121 MMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDSKIIK 238 AIL TVLADDP LT R + L + P+R+I+D ++ ++I+ Sbjct: 181 CSAILSSSNTVLADDPYLTVRWSELDAETQAVYPEENLRQPVRVIVDSQNRVVQQHQVIQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 + + D +N+ I DL L+ L R + ++ VE Sbjct: 241 QPGHCWLARTKADGD------NWPENVEQILLPAHGVGVDLVLLMMQLGKRQINTVWVEC 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE 322 G +A + + LVD ++LY + V+G+ Sbjct: 295 GPLLAGALLTLGLVDELVLYVAPKVLGD 322 >gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Koribacter versatilis Ellin345] gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Koribacter versatilis Ellin345] Length = 399 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 196/382 (51%), Gaps = 36/382 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RF AL + + + S NP V ++V DG VIG G Y G HAEV ALE+ Sbjct: 13 ASPDERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKHAEVLALEQ 72 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT Y+ LEPCSH GR+ PCA +I GI+RVV + DP+ V+GRG L + Sbjct: 73 AGNAARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGRGFAKLREA 132 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM----------IGMAGCGS 171 G+ ++ + + + R +TLK A++ D IG + G Sbjct: 133 GVELLVGVFADYARKLNEGFSKRIRTGLPLVTLKAAMTLDGKIAPPPAEVTDIGFSQPGW 192 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKL 230 IT I++ V LR +D+I++G+GTV++D+P LT R GL P +R++LD +L Sbjct: 193 --ITSEIARAHVQELRHAADSIMIGVGTVVSDNPLLTDR-TGLPRRRPLLRVVLDSQLRL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI--------------IYCDCRDLK 276 LDS+++KTA ++ + ++ A A ++ I + + DL Sbjct: 250 PLDSRLVKTAHHDVLVFCSFAEEKKRA-ALEERGIQVEQVPLAKNEPGGVAVAGGRPDLN 308 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLE 335 ++ L R + SL+VEGGAAV + + + +VD + LY + ++G G +P L GY Sbjct: 309 AVVERLGARELNSLIVEGGAAVNWAALAAGIVDKVFLYYAPKILGGGNAVPFALGPGYAR 368 Query: 336 KNFMCVRRDY----FGSDVCLE 353 + R+ FG D +E Sbjct: 369 MDEAAYLRNLELHRFGEDFAVE 390 >gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 367 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 185/356 (51%), Gaps = 10/356 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M A+ + G TS NP V +I+ + ++G G G PHAE+ A+E+AG A+ Sbjct: 13 WMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSLAK 72 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T V LEPC H G++PPC I+ GI+RVVV + DPD RVSG+G+ +L + GI +V Sbjct: 73 GGTLLVNLEPCCHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEVVT 132 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E A++ R R TLK A+S D IG++ S I+G S+ +VH LR Sbjct: 133 GILEKEAAFLNRAFIFRNRTGRPWGTLKWAMSFDGRIGLSNGKSKWISGEKSRKRVHSLR 192 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A++DA++VG GTV +D+P LT R G+ + P+R++ L ++++ T L +I Sbjct: 193 AKNDAVIVGGGTVRSDNPLLTTR--GIADIEPLRVVCSSTLDLPKEAQLWNTELAKTLIF 250 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 D L + + K++ L RG +L E G+++A I Sbjct: 251 YGPESD-ARCLENLPSGPERLCLEENTPIKVMEALAQRGCNQVLWECGSSLATKAIQQNC 309 Query: 308 VDSIILYRSQIVIGEGGIPSPLEE-GY--LEKNFMC--VRRDYFGSDVCLEYIGKN 358 V + L+ S ++G +PL + G+ +E+ F V + G D L + N Sbjct: 310 VQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEVSSNKSGEDFVLNMLFDN 365 >gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia vietnamiensis G4] gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia vietnamiensis G4] Length = 373 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 174/330 (52%), Gaps = 17/330 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGCDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAYEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV D+P LT R G+ P R+++D L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR--GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 AP++I D + A + + ++ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEIRANVLQSRGAEVVSLANMQGKVDLPGMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G + S + + VD +++Y + ++G Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLG 327 >gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106] gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106] Length = 368 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/356 (32%), Positives = 182/356 (51%), Gaps = 9/356 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA 63 FD + M L +R +G T+ NP V ++V+D +IG G G PHAEV AL +A Sbjct: 12 EFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDA 71 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GAT YV LEPC+HYGR+PPC + +I+ + +VVV + DP+ V+G+G++ L Q G Sbjct: 72 GEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAG 131 Query: 124 IIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E E + ++ R + + K A++ D I S IT ++ Q Sbjct: 132 IEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQQ 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR DA++VG TV D+P LT G E +P+R+++ L L + + Sbjct: 192 VHQLRVACDAVIVGGNTVRRDNPHLTTHNQG--EPNPLRVVMSRKLDLPLQANLWDITEA 249 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ T++ DP +KK + ++ K ++ L R S+L E G +A Sbjct: 250 NTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYERQFLSVLWECGGTLAAQA 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKN-FMCVRR---DYFGSDVCLE 353 I + I+ + + +IG SP+ + G + N + ++R GSD +E Sbjct: 310 IAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLKRVTLHSIGSDYLIE 365 >gi|319790138|ref|YP_004151771.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans HB-1] gi|317114640|gb|ADU97130.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans HB-1] Length = 371 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 194/377 (51%), Gaps = 39/377 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G T NP+V ++V++G V+ G G PHAE ALE AG++ Sbjct: 3 DCYFMELALAEAYKGKGKTLPNPAVGAVVVREGRVVATGYHEAPGRPHAEAVALERAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+HYGR+PPC + II G++RVVV + DP+ SG G++ L GI V Sbjct: 63 AKGATLYVTLEPCNHYGRTPPCTEKIIASGVKRVVVGLRDPNPVASG-GIERLRGAGIEV 121 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + +LT RS + LK+A + D S ITG ++ VH Sbjct: 122 TVGVLKERCFELVEDFLTLVTCGRSFLHLKLASTLDGATADRDGRSKWITGGEARRLVHR 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+ +A++VGIGTVLADDP LT R + E P+ +++DP KL ++ +++K A + Sbjct: 182 LRSYHNAVMVGIGTVLADDPLLTVREFPV-EKQPIAVVVDPSLKLPVNCRLVKER-AAEL 239 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG----------------VTS 289 ++VT + + A +++ + +LL + G G V S Sbjct: 240 VVVTAQESLLSYKASLLQDLGV---------RLLPVFGGEGRLDLEEALNGLKEEFSVYS 290 Query: 290 LLVEGGAAVAHSFINSRLVDSI-ILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVR 342 LL EGGA +A S + LVD + + Y + + G +P LEE + NF Sbjct: 291 LLCEGGARLAGSLLVQGLVDRLSLFYAPKALGGRDFVPIFGCESRSLEEAF---NFWLFE 347 Query: 343 RDYFGSDVCLEYIGKNL 359 GSD L+ + L Sbjct: 348 CGKVGSDALLKLYSREL 364 >gi|332670474|ref|YP_004453482.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484] gi|332339512|gb|AEE46095.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484] Length = 395 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 113/303 (37%), Positives = 154/303 (50%), Gaps = 33/303 (10%) Query: 28 NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83 NP V C L+ DG V+G G A G PHAEV AL +A G GATA VTLEPC H G Sbjct: 43 NPRVGCVLLTPDGSVVGEGWHAGAGTPHAEVAALRDAASRGLPTDGATAVVTLEPCDHTG 102 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 R+ PC Q ++ G+RRVVV V DP+ +G G + L G+ +V ++ +G+ L +L Sbjct: 103 RTGPCTQALLAAGVRRVVVSVPDPNPVAAG-GAERLRAAGVDVVTDVLAPDGRTLLGTWL 161 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +TLK+A S D + A S IT +S++ H LRA+ DAI VG GTVLA Sbjct: 162 ASVERGRPFVTLKLATSLDGRVAAADGSSRWITSDVSRHHAHDLRAEVDAIAVGTGTVLA 221 Query: 203 DDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DDP LT R L P+R++ V D P A Sbjct: 222 DDPSLTARNAAGELHRDQPLRVV------------------------VGHRDVPAGAR-L 256 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +++ D +L +L R V LLVEGG +A +F+ +RLVD + Y + +++ Sbjct: 257 HGPGGEVVHVRSHDPADVLRVLAEREVRHLLVEGGPTLAAAFLRARLVDEVHAYVAPVLL 316 Query: 321 GEG 323 G G Sbjct: 317 GAG 319 >gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli 95/1000] gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli 95/1000] Length = 365 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 178/334 (53%), Gaps = 19/334 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGE 65 ++M A+ ++ G TS NP V +IVKD VIG G G HAE+ A +E GE Sbjct: 4 KYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDRVIGIGYHKKYGENHAEINAFLNAKENGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GA+ YVTLEPCSHYG++PPCA II+ +++V++ D + +V+G G++ L GI Sbjct: 64 DVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGIE 123 Query: 126 VDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 V + E ++F + Y+ ++ + +K A++ D I S IT ++ Sbjct: 124 VVVNVLEEECRKLNEVFFY-YIANKI---PFVVMKYAMTMDGKIATVSGKSKWITSEKTR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R + AI+VGI TV+ D+P L CRL + +P+RIILD K+SLDS I KT+ Sbjct: 180 EHSHRFRNKYSAIMVGINTVIEDNPMLNCRLPNTR--NPIRIILDSSLKISLDSNICKTS 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGG 295 I T + D + II + + LK+L+ IL + + S+ VEGG Sbjct: 238 KDIKTFIATVSGDEKKIKELEGLGVEIIKTESDNGRVSLKELMKILGEEKNIDSVYVEGG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 A++ S + +LV+ ++Y + + G SP+ Sbjct: 298 ASLHASLLKEKLVNKALVYIAPKIFGGFEAKSPI 331 >gi|116493546|ref|YP_805281.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus pentosaceus ATCC 25745] gi|116103696|gb|ABJ68839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus pentosaceus ATCC 25745] Length = 353 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/350 (33%), Positives = 184/350 (52%), Gaps = 21/350 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EA 67 +M+ A + T TNP V +IVK+ +V+ +G G HAE+ AL+ + +A Sbjct: 9 YMNLAFEMAEKGKYQTWTNPLVGAVIVKNNVVLAKGYHHQFGAAHAEIDALQHLDDLKQA 68 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGAT YV+LEPCSH+G++PPCA+ + E GI+ VVV DP+ V+GRGLQ L GI + Sbjct: 69 RGATMYVSLEPCSHFGKTPPCAKKLAEVGIKAVVVGQKDPNPLVAGRGLQILRDAGIEIK 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + ++ G + + + +R ++ +K A++ D I ITG + LR Sbjct: 129 VLNQTGGLNVKYNFFYQ--HQRPYVNVKYAMTLDGKINQQANQRSIITGKEAYQDSQQLR 186 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL--DPHFKLSLDSKIIKTALLAPV 245 A+ AILVG T+ D P+LT R + + P R++L D D KTA P+ Sbjct: 187 AEYQAILVGENTLKVDHPQLTVRQIAVYQQ-PWRMVLIRDVDQLKVEDYAFFKTA--DPI 243 Query: 246 IIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++T ++ R+ N+ +I D K+LT+L RG+ S+LVEGG+ + F+ Sbjct: 244 LLLTS------SVTRRQWPNNVEVI-SDRWTPNKILTLLAKRGIQSVLVEGGSQIHAEFL 296 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350 S LVD I +Y + + G G+P+ P + Y + V + G D+ Sbjct: 297 ASGLVDEINVYLAPRIYGATGLPAIFNPTQLPYQSNAYQLVEKMELGPDM 346 >gi|212223758|ref|YP_002306994.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1] gi|212008715|gb|ACJ16097.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1] Length = 361 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/337 (36%), Positives = 178/337 (52%), Gaps = 39/337 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +FM AL ++ G + NP V +IVKDG VIG G G HAE+ A+E+A Sbjct: 5 DKKFMHLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRKFGEKHAEINAIEDAKDR 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP V+GRG++ + + G Sbjct: 65 GHDTRGATLYVTLEPCSHWGKQPPCADRIIAEGFKRVVVAMKDPHSLVAGRGIEKMQRAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++E E K ++ K +++K+A++ D I S ITG ++ + Sbjct: 125 IEVDVGILEEEAKKLNEIFIKYITTKIPFVSIKLALTLDGFIATESFSSQWITGDKARQK 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPH------------FK 229 V LR + AI+VG GT+L D+P+L CR L E P ++ILD H F+ Sbjct: 185 VQELRRRHMAIMVGAGTILRDNPKLNCR---LPECPPKYKVILDRHGLIGEELSGGRRFR 241 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L D VII TEN + AF + N I+ + D +++L L G+ S Sbjct: 242 LFNDGN---------VIIFTENPE-----AFGEVNATIV--EETDPERILRKLGEMGIDS 285 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+EGG +A F++ D ++ + G G P Sbjct: 286 VLIEGG-RIACQFLS--YADKFYIFYGPKLFGRGIKP 319 >gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC BAA-798] gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC BAA-798] Length = 364 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/334 (36%), Positives = 177/334 (52%), Gaps = 19/334 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + +G T NP+V ++V+DG+VIG+G T G PHAEV AL EAGE ARGA Sbjct: 1 MRRALELAESALGRTWPNPAVGAVVVRDGLVIGKGATQPPGGPHAEVVALAEAGEAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPCSH+GR+PPC + II G+R V DP+ +V GRG+ L + GI V + Sbjct: 61 ILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E + R +TLK A++ D I S ITG ++ H LR + Sbjct: 121 CEREATRINEGFFKRVRTGLPFVTLKYAMTLDGRIATRTGSSKWITGEEARTCAHRLRDR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSKIIK-----T 239 +DAI+VG+GTVLADDP LT RL H P+R+++D + + +++ Sbjct: 181 ADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPLRVVVDSRGRTPARAAMLRRDTPGR 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 L+A + E+ LA++ + D L+ LL L GV + LVEGG Sbjct: 241 TLVACTTLAPEDRR----LAWQDAGAEVAVFAPEDGRVPLEALLRYLGDTGVNTALVEGG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + + ++ L D I+ + + +IG G P+P+ Sbjct: 297 GTLHGALLDVGLADKIVAFVAPKLIGGEGAPAPV 330 >gi|218710376|ref|YP_002417997.1| riboflavin biosynthesis protein RibD [Vibrio splendidus LGP32] gi|218323395|emb|CAV19572.1| Riboflavin biosynthesis protein ribD [Vibrio splendidus LGP32] Length = 374 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/336 (33%), Positives = 177/336 (52%), Gaps = 27/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 + D + MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G HAEV A+ Sbjct: 5 TPLDFQMMSRAIKLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEAHAEVHAMRM 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GA AYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L Sbjct: 65 AGDKAKGAIAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDA 124 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V+ ++E + A++ R + LK+A S D + S IT ++ Sbjct: 125 CIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARR 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFKL 230 V RA+S A+L TV+ D+ L R L +EH P+R+ILD +L Sbjct: 185 DVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKEHYAEDELRQPIRVILDRQNQL 244 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVT 288 + K+ +T VL +A +I + D DL L+ L + Sbjct: 245 YPELKLFQTPT------------SVLRVAETSADIEVETTDAGQLDLHDLMRQLPANHID 292 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + VE GA +A S I ++LVD +ILY + ++G G Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDG 328 >gi|282917028|ref|ZP_06324786.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus D139] gi|283770846|ref|ZP_06343738.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus H19] gi|282319515|gb|EFB49867.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus D139] gi|283460993|gb|EFC08083.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus H19] Length = 347 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 160/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPNLTTNLT----HIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|317052209|ref|YP_004113325.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum S5] gi|316947293|gb|ADU66769.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum S5] Length = 377 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 177/327 (54%), Gaps = 13/327 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL +R +G TS NP V +IV G ++G G A G HAEV AL++AGE+ARG Sbjct: 11 MQMALNLARKGLGFTSPNPVVGSVIVDAAGAIVGMGYHAKAGMAHAEVVALKDAGEKARG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 AT YVTLEPC GR+PPC II GI++VV DP+ V+GR L GI V+ Sbjct: 71 ATLYVTLEPCCVQGRTPPCTDAIIRAGIQKVVYAAQDPNPAVAGRSRAILEAAGIAVESG 130 Query: 129 MMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E + +L+ + + + ++ +ITLK A++ D +A S ITG ++ H LR Sbjct: 131 ILEPEAR-YLNRHFNKHITRQMPYITLKSAITLDGKTAVANGQSRWITGEEARQDGHFLR 189 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAP-V 245 DAI VGIGT++ADDP LTCR G P +I D + ++ +++ + V Sbjct: 190 GIHDAIAVGIGTIIADDPLLTCRHGGKTALPHPDVVIFDTFLRTPRNAAVLRPSEAERRV 249 Query: 246 IIVT-----ENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 IIVT E+D L + I + L++ L + G+TS+LVEGGA + Sbjct: 250 IIVTSSTMMESDTATRLLGAGIQLIGLPPASQGLPLQQAFAALYEQYGITSVLVEGGAGL 309 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 + I L D ++Y + + G+ G+ Sbjct: 310 TSAIIKETLEDEHVIYMAPKLFGDEGM 336 >gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] Length = 363 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/324 (34%), Positives = 172/324 (53%), Gaps = 12/324 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D + M+ AL ++ + +T+ NP V C++V+DG+V+G G T G HAE+QAL +A Sbjct: 6 DQQGMALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQALADAQAR 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G GAT YVTLEPCSH+GR+PPCA II G+ RVV + DP+ V+G GL+ L G Sbjct: 66 GNSVTGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLERLRAAG 125 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + + + ++ + +R + + +K A S D + S IT +++ Sbjct: 126 IAVTTEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITAAPARDD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H+ RA++ A+L GIGTV ADDP+LT R P RI++D ++ L ++I++ Sbjct: 186 GHVWRARACAVLTGIGTVKADDPQLTVRAVATPRQ-PRRIVIDSRLEIDLQARILQD--- 241 Query: 243 APVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 APV +V D A +I DL L+ L R + L VE G + Sbjct: 242 APVWVVCAQADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAGFKL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322 S + VD ++LY + +IG+ Sbjct: 302 NGSLLREGCVDELLLYLAPSLIGD 325 >gi|62260407|gb|AAX77904.1| unknown protein [synthetic construct] Length = 390 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 117/353 (33%), Positives = 175/353 (49%), Gaps = 18/353 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + + + D +M AL + S NP V C+IVK+G +I G G HAEV AL Sbjct: 25 LEMKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHAL 84 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 85 TKAVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLK 144 Query: 121 QKGIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 145 NAGITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKIS 200 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + H LR DAIL+G T++ D+P L R+N + P R IL H + Sbjct: 201 SHQAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNW 260 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLL 291 + A I V +A + I + L L+ + G+TSLL Sbjct: 261 RVLDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLL 320 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 VEGG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 321 VEGGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 368 >gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 374 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/336 (33%), Positives = 180/336 (53%), Gaps = 24/336 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R M A++ ++ T+ NP+V C+I + ++G G G PHAEV AL++A Sbjct: 3 THLDTRLMLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI +V+ + DP+ V+GRG++ L + G Sbjct: 63 GTLAKGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E E + ++ +K + LK+A S D +A S ITG ++ Sbjct: 123 IDVQVGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V RA++ AIL TV+ADDP L R + L E P+R+I+D +L+ Sbjct: 183 VQRHRARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRLT 242 Query: 232 LDSKIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 ++ + E D+ + R+ + I DL +L+ L Sbjct: 243 PAYQLFHLPGKTILARTEEGDEDWPESVSQWVVPTRQNSQQI------DLTELMRQLAEA 296 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G+ + VE GA +A ++++LVDS+ILY++ ++G Sbjct: 297 GINHIWVEAGAGLAGGLLDAQLVDSLILYQAPKLMG 332 >gi|254507822|ref|ZP_05119952.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16] gi|219549195|gb|EED26190.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16] Length = 368 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 23/334 (6%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP + D MS A+ ++ + T+ NP+V C+I ++G ++G G G PHAEV A Sbjct: 1 MPQFTETDFNMMSRAIWLAKGGIYTTAPNPNVGCVITQNGDIVGEGFHYRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L Sbjct: 61 LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQML 120 Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V+ + + I L+ +++ R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEQDAIALNPSFIKRMQTGLPFVQLKMAASLDGQTALANGKSQWITSEA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQS AIL TV+ D+ L+ R + L E P+R+ILD Sbjct: 181 ARRDVQRYRAQSGAILSTSKTVIEDNASLSVRWSDLPESVKAQYSESQLRQPVRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L+ + K+ + +IV D + L ++ I D T+ + Sbjct: 241 NQLTSELKLFQAG--GETLIVGPEGDVEMTLNADQQ---ISLQDT-----FATLASAHNI 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + VE GA +A S + LVD +++Y + ++G Sbjct: 291 NHIWVEAGATLASSLLQQDLVDELVIYLAPKIMG 324 >gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 378 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 119/338 (35%), Positives = 177/338 (52%), Gaps = 22/338 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ A + +R T+ NP+V C+I++D V+G G G PHAE+ AL AG Sbjct: 4 DEFYLALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAM 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAY+TLEPC+HYG +PPC + +I GI RVV + DP+ +V+GRGL L Q I V Sbjct: 64 AYGATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + ++ +L R I +K+A S D MA S IT ++ V Sbjct: 124 RHSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+SDAIL TVLAD+P L R L P+++I+D +++ Sbjct: 184 FRAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFH 243 Query: 235 KIIK---TALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CR-DLKKLLTILVGRGVT 288 +IIK T LA + + DD + + + ++ R DL L+ +L R + Sbjct: 244 RIIKSNGTTWLARI----QPDDKIWPRWVEQIQLPVLSRQDILRIDLMALMILLGKRHIN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 S+ VE GA +A S + + LVD +ILY S ++G+ P Sbjct: 300 SVWVEAGANLAGSLLLAGLVDELILYMSPKLLGDKARP 337 >gi|260172134|ref|ZP_05758546.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D2] gi|315920443|ref|ZP_07916683.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694318|gb|EFS31153.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 351 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/312 (35%), Positives = 167/312 (53%), Gaps = 19/312 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + NP V +IV +G +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVPPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++E E + + ++T R ITLK A S D+ I M +P+ + ++ Sbjct: 129 EVIVG-VLEEECQSLIRRFITFNTLHRPFITLKWAESADHFIDMERTSGMPVKLSSPLTS 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 188 MLVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDEN 245 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298 + P ++ TE P + NI I D LK+++ +L R + SLLVEGG+ + Sbjct: 246 V--PTLVFTEKKQPA------RTNITYISIDFNHNTLKQIMEVLYQRKIQSLLVEGGSQL 297 Query: 299 AHSFINSRLVDS 310 SFIN L D Sbjct: 298 LQSFINDELWDE 309 >gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1] gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1] Length = 360 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 123/322 (38%), Positives = 175/322 (54%), Gaps = 17/322 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G V+G G G PHAEV AL AG ARG Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TAYVTLEPC+H GR+ PCAQ +IE G+ RVV V DP+ + SG G L GI + Sbjct: 61 GTAYVTLEPCNHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGAT-LRAAGIATEAG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E E + A+LT R H+ K A + D I A S I+ S+ VH LRA Sbjct: 120 LLEQEAEEGNAAWLTSVRRGRPHVLWKYAATLDGRIAAADGTSRWISSPESRADVHRLRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTALLAPVI 246 ++DA++VG GT+ ADDP L R + + P+R++LD + ++++ A AP + Sbjct: 180 EADAVVVGSGTLRADDPHLAVRGRPGTDPADQPLRVVLDTRATVRPGARVLDDA--APTL 237 Query: 247 I-VTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I V E+ D P + L + N I + LL L RGV S+L+EGG +A + Sbjct: 238 IAVAEDADTGHLPGVDLVRLPADENGI-----SVHALLAELHRRGVRSVLLEGGPTLAGA 292 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ + VD ++ Y + +++G G Sbjct: 293 FVAAGAVDKVVGYLAPVLLGAG 314 >gi|88856442|ref|ZP_01131100.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1] gi|88814309|gb|EAR24173.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1] Length = 345 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 116/340 (34%), Positives = 171/340 (50%), Gaps = 41/340 (12%) Query: 24 LTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 +T NP V C++V D G ++ G G PHAEV AL + G A G TA VTLEPC+H+ Sbjct: 26 ITGGNPQVGCVLVNDAGEIVAEGWHHGAGTPHAEVDALTKLGGNAAGLTAVVTLEPCNHH 85 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 GR+ PC++ +I+ G+ RVV V DP VR SG G Q L G+ ++ +++ + FLH++ Sbjct: 86 GRTGPCSEALIDAGVSRVVYAVSDPGVR-SGGGSQRLRDAGVEVIGGASQADAEEFLHSW 144 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 LT +R H+T+K A + D A S ITG ++ VH RA++DAI+VG GTVL Sbjct: 145 LTATRLQRPHVTVKWASTLDGRAAAADGTSQWITGTAARQHVHEQRARADAIVVGTGTVL 204 Query: 202 ADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 ADDP LT R + L E P ++L + P A Sbjct: 205 ADDPSLTARGDAGELLEWQPQPVVLG------------------------RREIPAAA-Q 239 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS--- 316 R + D DL L+ L G+ + VEGG +A +FI + L D +++Y + Sbjct: 240 LRHHPKQLRQFDGGDLNAALSALFEAGIRRVFVEGGPTIASAFIAAGLADELLIYLAPKL 299 Query: 317 ----QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 ++ +GE G+ + E K+ G+DV + Sbjct: 300 LGGPKVALGELGVATMAE----AKDLSITELRPLGNDVLI 335 >gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus AHT2] gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus AHT2] Length = 368 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 130/341 (38%), Positives = 182/341 (53%), Gaps = 7/341 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS+ D +M AL +R VG TS NP V ++VKDG V+GRG G PHAE+ AL Sbjct: 2 VSATDQAYMKMALELARKGVGKTSPNPCVGAVLVKDGQVVGRGWHRRAGEPHAEINALAA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GAT YVTLEPC+H GR+PPC++ I GIRRVV + DP+ G G + Sbjct: 62 AGDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDPNPVAGGGGAYLAGRG 121 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 ++ ++ + + + R + LK AVS D I A S ITG ++ Q Sbjct: 122 LEVLAGVLADDCRRLNLPFSKRVTTGYPWVQLKAAVSLDGRIAAATGRSKWITGEQARRQ 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR SDAILVG GTVLADDP LT RL G + P+R+ILD +K++ Sbjct: 182 VHRLRCLSDAILVGSGTVLADDPSLTTRLPG-KGRDPLRVILDSKLATPPAAKVVAHDSA 240 Query: 243 APVIIVTENDDP-VLALAFRKKNINI--IYCDCRDLKKLLTIL--VGR-GVTSLLVEGGA 296 A I D R+ + + + + +L+ +L +GR GVT+LLVEGG Sbjct: 241 AATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTLRLVEVLEHLGRAGVTTLLVEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 V SF+ L D +I + + +++G G+ + E G + + Sbjct: 301 RVHGSFLRRGLADEVIFFIAPLLLGGDGMAAVSELGLADPS 341 >gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] Length = 363 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/356 (34%), Positives = 181/356 (50%), Gaps = 17/356 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL +A Sbjct: 6 DVQGIRLALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQALNDAADR 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + G+T YVTLEPCSH+GR+PPCA +I+ + RVV + DP+ V+G+GL L G Sbjct: 66 GFDVSGSTVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLARLEAAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E+E + +L+R + + +K A S D M + S ITG ++ Sbjct: 126 IQVSCGVLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ AIL GIGTV+ DDP+LT R P RI++D H ++S ++++ Sbjct: 186 GHYWRARACAILTGIGTVMEDDPQLTVRAIDTPRQ-PQRIVIDSHLQISPHARVLSG--- 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +IV +P R II DL L+ L R + L VE G + Sbjct: 242 GGTLIVAAQANPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAGFKL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350 S I VD +++Y + ++G+ +P PLE +KN G+D+ Sbjct: 302 NGSLIREGCVDELLVYLAPTLLGDAQRMFNLP-PLESLEHKKNLTFHEVKQIGADL 356 >gi|187930956|ref|YP_001890940.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. mediasiatica FSC147] gi|187711865|gb|ACD30162.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. mediasiatica FSC147] Length = 355 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWQV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293 A I V +A + I + L L+ + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas haloplanktis ANT/505] gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas haloplanktis ANT/505] Length = 377 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 174/328 (53%), Gaps = 12/328 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL A Sbjct: 8 TEHDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNALAVA 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS G Sbjct: 68 GKNAQGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSDAG 127 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ES+ + + R + ++ K+A S D + S IT ++ Sbjct: 128 IDVAYGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAARQD 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--------GLQEHSPMRIILDPHFKLSLDS 234 V L RA+S AIL G TVL DD +L RL+ L P+R+I+D +L+ D Sbjct: 188 VQLYRAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTPDL 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 + + + + VII T D L K+I + + + DL+ +L L ++ +E Sbjct: 248 ALFE--IQSDVIIFTTKVDKSLQWPHFVKHIEVSESNGKVDLQAVLEKLGQLQFNNVWLE 305 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GA +A LVD + Y + ++G Sbjct: 306 AGATLAGKMTELNLVDEFVFYLAPKLMG 333 >gi|326563101|gb|EGE13374.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 12P80B1] Length = 350 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 186/361 (51%), Gaps = 37/361 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLSLDSKII 237 V LRAQS AI+ G GT++AD+P LT R G+ H P +I+D +LS DS Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLS-DSDNY 248 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296 + V DD L +R DL LL LV + +L+E G+ Sbjct: 249 Q---------VLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAGS 285 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 286 ELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLI 345 Query: 354 Y 354 Y Sbjct: 346 Y 346 >gi|56708681|ref|YP_170577.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis SCHU S4] gi|110671153|ref|YP_667710.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis FSC198] gi|134302741|ref|YP_001122709.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis WY96-3418] gi|224457890|ref|ZP_03666363.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis MA00-2987] gi|254371312|ref|ZP_04987314.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875556|ref|ZP_05248266.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis MA00-2987] gi|56605173|emb|CAG46304.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis SCHU S4] gi|110321486|emb|CAL09687.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis FSC198] gi|134050518|gb|ABO47589.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis WY96-3418] gi|151569552|gb|EDN35206.1| hypothetical protein FTBG_01094 [Francisella tularensis subsp. tularensis FSC033] gi|254841555|gb|EET19991.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis MA00-2987] gi|282159932|gb|ADA79323.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis NE061598] Length = 355 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 174/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293 A I V +A + I + L L+ + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 377 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 115/329 (34%), Positives = 171/329 (51%), Gaps = 11/329 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM ALR + + TS NP V C++V +IG+G T G PHAEV AL + Sbjct: 8 ASLPTDFMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRD 67 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G +GA AYVTLEPCSH+GR+ PC ++E GI RVV + DP+ RV+G+G + L Sbjct: 68 ARARGHATQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERL 127 Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V+ +E L+ +L+R V + + LK A S D + + S IT Sbjct: 128 RAAGVEVEVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAA 187 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ VH RA++ A+L G+GTVLADDP L R E P +LD H + D+ +++ Sbjct: 188 ARADVHAWRARACAVLTGVGTVLADDPRLDVR-EVPTERQPWVAVLDSHLRTPPDAALLR 246 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEG 294 A V+I D A I++ D L+ ++ L R + VE Sbjct: 247 -AQARDVVIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEA 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GA + + + LVD ++LY + ++G+G Sbjct: 306 GAIASGALCAAGLVDEVLLYLAPKLLGQG 334 >gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805] gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805] Length = 372 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 115/304 (37%), Positives = 166/304 (54%), Gaps = 19/304 (6%) Query: 3 VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58 V+ D R+ M AL + G TS NP V +++ G ++G G A G PHAEV Sbjct: 4 VADADQRWIPWMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVG 63 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AG+ ARG T VTLEPC H+GR+PPC +I+ GI RVVV + DPD RV+G GLQ Sbjct: 64 ALAQAGDAARGGTIIVTLEPCCHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQR 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ ++ ++E+E +A++ R R LK A+S D + S I+G Sbjct: 124 LRDAGVEVISGVLEAEAAQQNYAFVHRVRTGRPWGLLKWAMSLDGRTALPNGASQWISGS 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH LRAQ DA++VG GTV ADDP LT R GL+ P+R++L L ++I Sbjct: 184 TARTWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRRLDLPDQAQIW 241 Query: 238 KTALLAPVIIVTENDDP------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + +AP ++V D P + AL +++ + C + L+ +L RG +L Sbjct: 242 DQS-VAPTLVVHGQDAPAEARDRLEALGLQRE----VLPAC-GPESLMAVLAQRGCNRVL 295 Query: 292 VEGG 295 E G Sbjct: 296 WECG 299 >gi|329733229|gb|EGG69566.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21193] Length = 347 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 162/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYATKDNSLDTHGD--ETLRAQGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY +L +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIIYLKSCELTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|222099734|ref|YP_002534302.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM 4359] gi|221572124|gb|ACM22936.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM 4359] Length = 348 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/320 (38%), Positives = 177/320 (55%), Gaps = 19/320 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 RFM A+ ++ +G + NP V ++VK+G +I G Y G PHAE A+E A GE Sbjct: 4 RFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPYFGGPHAERVAIESAKRKGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ VSG G++ L + GI Sbjct: 64 DLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++E E K ++T E R I LK A + D I A S IT + +++ H Sbjct: 123 VVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKAH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTALLA 243 +R A+LVG TVL DDP LTCRL G + +P R+ILD LS S ++ + A Sbjct: 182 EMRNVYSAVLVGARTVLKDDPRLTCRLKGGR--NPTRVILDRRGILSGGSYRVFEDN--A 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 VI+ TEN + + K + DC + +L +L +GV S+LVEGG+ V F+ Sbjct: 238 RVIVFTENKEAKYPVHVEK-----VLNDC-SVGGILKVLYEKGVDSVLVEGGSEVLGEFL 291 Query: 304 NSRLVDSIILYRSQIVIGEG 323 D + + S V GEG Sbjct: 292 E--YADVVFAFYSTKVFGEG 309 >gi|15924761|ref|NP_372295.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|15927345|ref|NP_374878.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus N315] gi|148268246|ref|YP_001247189.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH9] gi|150394314|ref|YP_001316989.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH1] gi|156980087|ref|YP_001442346.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu3] gi|253315858|ref|ZP_04839071.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006556|ref|ZP_05145157.2| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794151|ref|ZP_05643130.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781] gi|258420684|ref|ZP_05683623.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719] gi|258438334|ref|ZP_05689618.1| riboflavin specific deaminase [Staphylococcus aureus A9299] gi|258443792|ref|ZP_05692131.1| riboflavin specific deaminase [Staphylococcus aureus A8115] gi|258446003|ref|ZP_05694179.1| riboflavin specific deaminase [Staphylococcus aureus A6300] gi|258448269|ref|ZP_05696396.1| riboflavin specific deaminase [Staphylococcus aureus A6224] gi|258454203|ref|ZP_05702174.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937] gi|282893262|ref|ZP_06301496.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117] gi|282927897|ref|ZP_06335508.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102] gi|295406080|ref|ZP_06815888.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819] gi|296276038|ref|ZP_06858545.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MR1] gi|297244995|ref|ZP_06928872.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796] gi|13701564|dbj|BAB42857.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus N315] gi|14247543|dbj|BAB57933.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|147741315|gb|ABQ49613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus JH9] gi|149946766|gb|ABR52702.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH1] gi|156722222|dbj|BAF78639.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu3] gi|257788123|gb|EEV26463.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781] gi|257843288|gb|EEV67698.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719] gi|257848378|gb|EEV72369.1| riboflavin specific deaminase [Staphylococcus aureus A9299] gi|257851198|gb|EEV75141.1| riboflavin specific deaminase [Staphylococcus aureus A8115] gi|257855245|gb|EEV78184.1| riboflavin specific deaminase [Staphylococcus aureus A6300] gi|257858508|gb|EEV81384.1| riboflavin specific deaminase [Staphylococcus aureus A6224] gi|257863655|gb|EEV86412.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937] gi|282590407|gb|EFB95486.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102] gi|282764580|gb|EFC04706.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117] gi|285817450|gb|ADC37937.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus aureus 04-02981] gi|294969077|gb|EFG45098.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819] gi|297178075|gb|EFH37323.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796] gi|315130592|gb|EFT86578.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus CGS03] gi|329727599|gb|EGG64055.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21172] Length = 347 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|258415855|ref|ZP_05682126.1| riboflavin specific deaminase [Staphylococcus aureus A9763] gi|257839448|gb|EEV63921.1| riboflavin specific deaminase [Staphylococcus aureus A9763] Length = 347 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--EALRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|319442108|ref|ZP_07991264.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Corynebacterium variabile DSM 44702] Length = 353 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 117/315 (37%), Positives = 164/315 (52%), Gaps = 41/315 (13%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ DG V+G G T+ G PHAEV AL EAGE+ARG TA VTLEPC+H Sbjct: 32 GTTSPNPPVGAVILSVDGDVVGTGGTSPVGGPHAEVNALAEAGEKARGGTAVVTLEPCNH 91 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-------DRMMESEG 134 GR+ PCA ++E GI RVV DP G G ++L G+ V D ++ Sbjct: 92 TGRTGPCALALLEAGIARVVYAFADPG-DAEGGGAEFLRSHGVPVTGPLVTGDTGLDGVP 150 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 + + +L + R H+TLK A + D S ITG ++ VHL R++ DAI+ Sbjct: 151 QFSVEPWLASRRLGRPHVTLKYAGTLDGFAAATDGTSQWITGESARALVHLDRSRRDAII 210 Query: 195 VGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GT+LADDP LT R GL +H P R+++ + +D+ + Sbjct: 211 VGTGTILADDPRLTARRPEGGLYDHQPERVVVG-RTDVPVDAAVFP-------------- 255 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 AL +R L ++L L RG+ +L+EGG +A SFI LVD++ Sbjct: 256 ----ALRYRGGA----------LAEVLADLGARGIVDVLIEGGPHIAASFIADGLVDAVD 301 Query: 313 LYRSQIVIGEGGIPS 327 Y + ++G GIP+ Sbjct: 302 AYTAPALLGA-GIPT 315 >gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414] gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414] Length = 448 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 176/335 (52%), Gaps = 11/335 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M L +R +G TS NP V ++VKDG ++G G G PHAEV AL+ A Sbjct: 79 SDFDQAMMQRCLALARRALGRTSPNPLVGAVVVKDGEIVGEGFHPCAGEPHAEVFALKAA 138 Query: 64 G------EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 G +E R GAT YV LEPC+H+GR+PPC++ +I G+ +VVV + DP+ V G G Sbjct: 139 GVGADSTQENRACGATVYVNLEPCNHHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGG 198 Query: 116 LQWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L G+ V +E++ L+ A++ R V KR LK A++ D I S + Sbjct: 199 IARLRAAGVEVVVGVEAQACYQLNEAFIHRIVHKRPLGILKYAMTLDGKIATTSGHSAWV 258 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T ++++VH LRA DAI+VG TV D+P LT G H+P+R+++ L D+ Sbjct: 259 TNQDARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVG--AHNPLRVVMSRQLNLPEDA 316 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ TA V+ E P R++ + ++ + ++T L RG S+L E Sbjct: 317 RLWDTAEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWEC 376 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 G +A S I V I+ + + +IG +P+ Sbjct: 377 GGTLAASAIAQGAVQKILAFIAPKIIGGSHAATPV 411 >gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus ATCC 33331] Length = 366 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 182/346 (52%), Gaps = 25/346 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I+ G G G G PHAEV AL AGE ARG Sbjct: 10 MRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAAGERARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC+H GR+ PCAQ +IE G+RRVV V DP+ + +G G L G+ + Sbjct: 70 GTAIVTLEPCNHTGRTGPCAQALIEAGVRRVVYAVSDPNPQATG-GADTLRGAGLEVAQG 128 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+LT R ++ K A + D I A S IT ++ VH LRA Sbjct: 129 LLADEAEAGNTAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARADVHRLRA 188 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDP-HFKLSLDSKIIKTALLAPVI 246 ++DA++VG GT ADDP+L R G++ P+R+++D + ++++ + AP + Sbjct: 189 EADAVVVGSGTARADDPQLGVR--GIEGAVQPLRVVVDTGATAVRPGARVLDGS--APSL 244 Query: 247 IVTEND--------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + +D + VL L + D+ LL L RGV S+L+EGG + Sbjct: 245 VAVADDAEAGHLPEEAVLRLPRAATGPGL------DIDALLAALHARGVRSVLLEGGPVL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 A SF+ + VD+++ Y + +++G G P+ L + + +R D Sbjct: 299 AGSFVAAGAVDTVVGYLAPVLLGAG--PAALADAGISTISQALRLD 342 >gi|145640611|ref|ZP_01796194.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] gi|145274537|gb|EDK14400.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 22.4-21] Length = 250 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 96/246 (39%), Positives = 140/246 (56%), Gaps = 12/246 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL +A Sbjct: 5 SSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS G Sbjct: 65 GENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 125 IESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V +RA+S A+L TV+ADDP L R + E+ P+R+ILD ++ Sbjct: 185 VQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQ 244 Query: 232 LDSKII 237 K+ Sbjct: 245 PTHKLF 250 >gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus BP-1] gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus BP-1] Length = 379 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 109/362 (30%), Positives = 190/362 (52%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ DA++M L + G T+ NP V C+IV +G VIG G G PHAEV AL Sbjct: 10 IATIDAQYMGRCLELAARAKGRTAPNPLVGCVIVAEGRVIGEGFHPKAGEPHAEVFALRS 69 Query: 63 AGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E R AT YV LEPC+HYGR+PPC + I+ GI +VVV + DP+ +V+G G++ Sbjct: 70 VSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNPQVAGAGVER 129 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI V + E++ + A++ R +R LK A++ D I S+ ++G Sbjct: 130 LRSAGIEVTVGVREADCQRLNEAFVHRVRYQRPFGILKYAMTLDGKIASRAGHSLWVSGE 189 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH LR++ DA++VG TV D+P LT R H+P+R+++ L D+ + Sbjct: 190 AARAMVHQLRSECDAVIVGGNTVRLDNPLLTSR----HGHNPLRVVMSRTLDLPPDASLW 245 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T A +++ + + L + + + +++ + ++ +L RG+ + L E G + Sbjct: 246 DTTAAATLVVTSASPQHPLIPQLQARGVEVVHREPLTPTAVMALLHQRGIMTALWECGGS 305 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A + I +V + + + +IG P+P+ + L K + + DV + +G+ Sbjct: 306 LAAAAIAEGMVQKVWAFIAPKIIGGFDAPTPVADLGLTK----MHEALYLEDVTWQTVGE 361 Query: 358 NL 359 ++ Sbjct: 362 DI 363 >gi|153845346|ref|ZP_01993762.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ3810] gi|149745121|gb|EDM56372.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ3810] Length = 280 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/263 (39%), Positives = 147/263 (55%), Gaps = 13/263 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG+++G G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIVGEGYHHRAGEPHAEVHAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L Q H P R+ILD K Sbjct: 189 QDVQCYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTEND 252 LS D K+ T +I+ +E D Sbjct: 249 LSDDLKLFSTE-GERIIVSSEGD 270 >gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K] gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K] Length = 392 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 127/333 (38%), Positives = 182/333 (54%), Gaps = 14/333 (4%) Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 PV+ +A RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL Sbjct: 19 PVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVAL 78 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L Sbjct: 79 RAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLR 138 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ +V ++ +E + T E R +TLK AV+ D I + ++G + Sbjct: 139 RHGVAVVKGVLRAECDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAA 198 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LR + DA+LVG GT ADDP LT RL P+R++LD L + + Sbjct: 199 RAWVHRLRDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRG 257 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293 AP ++ + P R+ + CR DL+ LL L RGV LLVE Sbjct: 258 GSPAPTLVAHASAAPA-----RRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVE 312 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GGA V F+ + LVD + ++ + + G G+P Sbjct: 313 GGAHVHARFLEAGLVDRVAVFVAPKIAGGDGVP 345 >gi|237719659|ref|ZP_04550140.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4] gi|229450928|gb|EEO56719.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4] Length = 345 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 114/311 (36%), Positives = 165/311 (53%), Gaps = 17/311 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 3 EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 123 EVTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I + Sbjct: 183 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P I TE + P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 241 --PTFIFTEKEQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLL 292 Query: 300 HSFINSRLVDS 310 SFI++ L D Sbjct: 293 QSFIDNELWDE 303 >gi|329898131|ref|ZP_08272333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC3088] gi|328920911|gb|EGG28343.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC3088] Length = 361 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/314 (35%), Positives = 163/314 (51%), Gaps = 30/314 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IVKDG ++G G T G HAEV AL +AGE+ARGATAYVTLEPC+H GR+ P Sbjct: 18 NPHVGCVIVKDGQIVGEGYTQPPGQGHAEVMALAQAGEQARGATAYVTLEPCNHQGRTGP 77 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146 C+Q +I+ GI +VV ++DP V+G G + L GI V ++ K L +L R Sbjct: 78 CSQALIQAGISKVVAAIEDPYPEVAGSGFEALKHAGIEVRVGLLADTVKQQLQGFLLRLE 137 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + LK+A S D I +A S ITG ++ V LRA++ ++ G+GTVL DD + Sbjct: 138 RGYGRVRLKLACSLDGKIALANGESQWITGPSARRDVQRLRAEAGLVITGVGTVLEDDCQ 197 Query: 207 LTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTA---------LLAPVII 247 L R L H P+R + D + + +K++ A P I Sbjct: 198 LNVREGDLPLDPNLAREATAHQPLRAVFDSTLRTTNGAKVLSGARTLFCAEPKTTRPDHI 257 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 EN V AL N LL ++ +L+E G +A S++N+ L Sbjct: 258 NPENIVEVAALKTPAGLKN----------ALLQLMAIAPANEILLECGPRLAGSWLNAGL 307 Query: 308 VDSIILYRSQIVIG 321 +D +ILY++ +++G Sbjct: 308 IDELILYQAPVILG 321 >gi|314924237|gb|EFS88068.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL001PA1] gi|314964911|gb|EFT09010.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL082PA2] gi|315103908|gb|EFT75884.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA2] gi|327325608|gb|EGE67407.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL103PA1] Length = 331 Score = 172 bits (437), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++A+GATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDAKGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ P+R+++ +P R + + Sbjct: 204 LTVRLPGVTR-QPLRVVVG-------------------------MREPPAGCHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294 >gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] Length = 368 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/333 (35%), Positives = 174/333 (52%), Gaps = 20/333 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D + M AL + T NP V C+I V+G G G PHAEV AL +A Sbjct: 5 SEVDFQHMQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFALRQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ARGATAYVT+EPCSH GR+ C Q +I+ G+ VVV DP +V+G+G+ L G Sbjct: 65 GGLARGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQLRNAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ES + +L+ +R + LK+ +S D + S IT ++ Sbjct: 125 IEVRVGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTRARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA+S AIL G GTVLADDP LT R L+ + +P+R++LD ++ +++ Sbjct: 185 VQYWRARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVFNDQ- 243 Query: 242 LAPVIIVTENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 AP + V + P V+AL + ++ L++LL L RG+ LLVE Sbjct: 244 -APSLHVVHRECPLASSDSEQVMALPGDDQGLH--------LEQLLHNLSQRGLHDLLVE 294 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 G +A + + + LVD ++LY + ++G+ P Sbjct: 295 AGPTLAGNLLKAHLVDELLLYVAPRLLGDLARP 327 >gi|332976011|gb|EGK12882.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. 1501(2011)] Length = 374 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 186/362 (51%), Gaps = 36/362 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A+ ++ + T NP+V C++VKDG++IG G G PHAEV AL A + Sbjct: 36 DYYYMNLAIEAAKKGLYTTRPNPAVGCVLVKDGLIIGTGFHPKAGQPHAEVFALRNATQS 95 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ATAYVTLEPCSH G++PPCA+ +I+ + RVV+ DP+ +V+GRG++ L GI V Sbjct: 96 VAAATAYVTLEPCSHTGKTPPCAEALIKAQVSRVVIAGLDPNPKVAGRGVRLLLDAGIKV 155 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E L+ +L + ++ LKIA S D MA S ITG ++ V Sbjct: 156 SVGVCTEQAEQLNLGFLKSMRTQMPYVRLKIASSLDGRTAMASGESKWITGSAAREDVQQ 215 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDSKIIKT 239 LRA S AI+ G T++ D+P L R L Q P ++LD +L D K++ Sbjct: 216 LRALSGAIITGSQTIIKDNPSLNVRSTQLGVDIEQIPQPKVVVLDRRQRLKGSDYKVL-- 273 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAV 298 +N+ +++ D DLK LL +++V + +L+E G+ V Sbjct: 274 ----------QNEQ------------TLLWAD-NDLKTLLHSLVVEHDIHDVLIEAGSKV 310 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + SFI + LVD +I+Y++ V+G P + ++ F G+D+ L ++ Sbjct: 311 SGSFIEAGLVDELIVYQAPCVLGHEAQPMLTMTVNRLSSQRRFKLAHCSQIGTDIKLNFV 370 Query: 356 GK 357 Sbjct: 371 AN 372 >gi|315093789|gb|EFT65765.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL060PA1] Length = 331 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 107/297 (36%), Positives = 158/297 (53%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV + VIG+G G PHAEV+AL +AG++A+GATA VTLEPC H GR+ P Sbjct: 25 NPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDAKGATAVVTLEPCHHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ V + SE L+A T Q+ Sbjct: 85 CSHALVDAGIARVVIAQSDPNPVASG-GEQWLRTHGVEVVTGVLSEEATALNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 144 HRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL G+ P+R+++ +P R + + Sbjct: 204 LTVRLPGVTR-QPLRVVVG-------------------------MREPPAECHLRDDSAS 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G Sbjct: 238 TLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGG 294 >gi|110636628|ref|YP_676835.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cytophaga hutchinsonii ATCC 33406] gi|110279309|gb|ABG57495.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cytophaga hutchinsonii ATCC 33406] Length = 352 Score = 172 bits (436), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 105/332 (31%), Positives = 169/332 (50%), Gaps = 24/332 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL + G S+NP V C++VKDG +IG G G PHAEV A++ ++ Sbjct: 4 DERYMRRALELAMLGSGHVSSNPMVGCVVVKDGHIIGEGYHEKFGQPHAEVHAIQSVPDK 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + G+T YV LEPCSHYG++PPC+ I++ I RVV DP+ V+G G ++L GI Sbjct: 64 SLLEGSTLYVNLEPCSHYGKTPPCSHLIVDYKIARVVFANIDPNPLVAGAGFEYLMSNGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E EG+ + T KR +I LK A + D I S I+ +S+ V Sbjct: 124 EVIQGVLEEEGRELNRRFFTYIENKRPYIILKWAETADGFIAKENFDSKWISNELSRKLV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + D +L+G T L D+P L R +P+R +D ++ + + ++ Sbjct: 184 HKWRTEEDVVLIGTNTALYDNPRLNVR--DWTGRNPVRAFIDKQLQVPVGAHLL------ 235 Query: 244 PVIIVTENDDPVLALAFRKKNI-NII-YCDCRDLKKLLTILVG----RGVTSLLVEGGAA 297 + + + ++++ N++ Y L ++ ++ R S+LVEGG Sbjct: 236 ------DGSQETICYNYHEQDVRNLVEYVKVDPLDDMIDVIAEDMYVRKHLSILVEGGTQ 289 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + SF+ L D I ++RS G GI SP+ Sbjct: 290 LLKSFLKKGLWDEIRIFRSPNEFG-AGIESPI 320 >gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis Bt4] Length = 306 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/301 (36%), Positives = 159/301 (52%), Gaps = 11/301 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A Sbjct: 3 SENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR---DLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ + R DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300 Query: 295 G 295 G Sbjct: 301 G 301 >gi|114794616|pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 174/319 (54%), Gaps = 19/319 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 F A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A GE+ Sbjct: 17 FXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGED 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI + Sbjct: 77 LRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEV 135 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E E K ++T +KR + LK A + D I S IT + + +VH Sbjct: 136 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKVHE 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAP 244 R A+LVG GTVL D+P+LTCRL + +P+R+ILD K L K+ + A Sbjct: 195 XRNIYSAVLVGAGTVLKDNPQLTCRLK--EGRNPVRVILDR--KGVLSGKVFRVFEENAR 250 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 VI+ TE+++ A ++ DC ++ +L L R + S+LVEGG+ V F++ Sbjct: 251 VIVFTESEE-----AEYPPHVEKALSDC-SVESILRNLYERDIDSVLVEGGSKVFSEFLD 304 Query: 305 SRLVDSIILYRSQIVIGEG 323 D + + S + G+G Sbjct: 305 H--ADVVFGFYSTKIFGKG 321 >gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068] gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068] Length = 373 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 191/365 (52%), Gaps = 26/365 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D FM A+ + +GL NP V C+IV G V+GRG G PHAEV+AL++ Sbjct: 9 AASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQQ 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARG+T YVTLEPCSH+G++PPCA +I G+ RVV + DP +V G G L Sbjct: 69 AGEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRSA 128 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ + E+E + YL + K A++ D I S I+ S+ Sbjct: 129 GIAVESGVCEAEARALCAPYLKLVTRGMPWVIAKWAMTLDGKIATRSGYSQWISCSQSRE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + D I+VG TV DDP LT R G + +P RI+LD +L +++++TA Sbjct: 189 LVHGIRGRVDGIMVGRRTVELDDPLLTARPPG--KRTPARIVLDSQARLQNSTQLVRTAR 246 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG---------RGVTSL 290 +PV++VT E DD + + +++ C+ R +T++ Sbjct: 247 QSPVLVVTGPEADDKEI------RRLSMAGCEVLPFLAATHFERLLELLSELGRRQMTNI 300 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDY 345 LVEGGA + S +++RLVD + ++ + + G P P+ +E+ ++ D Sbjct: 301 LVEGGAKLLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGVEQVASALELRNLKIDQ 360 Query: 346 FGSDV 350 G+D+ Sbjct: 361 IGTDL 365 >gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus ATCC 23779] gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus ATCC 23779] Length = 371 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 179/349 (51%), Gaps = 26/349 (7%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS NP+V ++V+ G ++GRG T G HAEV AL EAGE+ARGA+ YVTLEPC+ + Sbjct: 22 GRTSPNPAVGAVVVQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTIW 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 GR+PPC II GI V++ DP+ R L GI V E E Sbjct: 82 GRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTEA 141 Query: 143 TRQ--VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 R V K+ +T+K A+S D I + I+G S+ +VH LR Q+DAILVGI TV Sbjct: 142 FRHWIVTKQPFVTVKYAMSLDGKIATRTGDARWISGPASRQKVHELRDQTDAILVGINTV 201 Query: 201 LADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 LADDP LT R L++H P+R++LD ++ + ++ A+ II T Sbjct: 202 LADDPLLTTR---LEQHWRPVQHPVRVVLDARGRMPASAAMLADAVPGSTIIATTA---A 255 Query: 256 LALAFRK--KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + A+R N I+ + LL L RG++SL+VEGG +F+ ++ V Sbjct: 256 ASAAWRASLNNAEILELPSNLEGRVSIPALLNELGQRGISSLMVEGGGETIAAFLAAQAV 315 Query: 309 DSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVR-RDYFGSDVCL 352 + + + +IG G PSP+ E VR + G+D+ L Sbjct: 316 QKVQVVIAPKIIG-GVAPSPVAGVGIARMSEAQLWQVRSSEQIGADIWL 363 >gi|269302657|gb|ACZ32757.1| riboflavin biosynthesis protein RibD [Chlamydophila pneumoniae LPCoLN] Length = 376 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 166/325 (51%), Gaps = 10/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C++V++ +IG G AY G PHAE A++ A G Sbjct: 11 FMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNASMPISG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 + YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q GI V Sbjct: 71 SDVYVSLEPCSHFGSRPPCANLLIKYKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + ESE + L YL ++ LK A S D + + S IT +++ V LRA Sbjct: 131 IGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AILVG TVL+DDP LT R L P+R++LD + SK+ +P + Sbjct: 191 ESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKT--SPTL 248 Query: 247 IVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VT P + ++ ++ + DL K+ L + + +LVEGG + S Sbjct: 249 YVTTERCPKNYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEGGTTLHTS 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 + R V+S++LY +++G+ P Sbjct: 309 LLKERFVNSLVLYSGPMILGDQKRP 333 >gi|313207146|ref|YP_004046323.1| riboflavin biosynthesis protein ribd [Riemerella anatipestifer DSM 15868] gi|312446462|gb|ADQ82817.1| riboflavin biosynthesis protein RibD [Riemerella anatipestifer DSM 15868] gi|315022456|gb|EFT35483.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Riemerella anatipestifer RA-YM] gi|325335416|gb|ADZ11690.1| Pyrimidine deaminase [Riemerella anatipestifer RA-GD] Length = 339 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 23/337 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +++S + + G T NP V +IV +GI+IG G G PHAE+ A+ + Sbjct: 5 KYISRCIALAEKARGNTYPNPLVGAVIVHNGIIIGEGYHHKAGEPHAEINAINSVENKGL 64 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + +T YV+LEPCSH+GR+PPCA I E G ++VV+ D + +VSG+G + + GI + Sbjct: 65 LKESTIYVSLEPCSHFGRTPPCATKITEIGFKKVVIGSADSNEKVSGKGKAMIEEAGIEV 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 VD+++E + + T +KR +I LK A S D I + PI+ ++ VH Sbjct: 125 VDKVLEERCRWLNRRFFTFHEKKRPYIILKWAESNDGFIDRNFVPT-PISNTLASQYVHK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ AILVG T L D+P L R L +P R+++D K+ I T AP Sbjct: 184 MRAEEHAILVGTQTALNDNPTLDVR--HLDGRNPTRVLIDLELKVPQSFNIFNTN--APT 239 Query: 246 IIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II +N D + + K+N L++L+ L + + S+++EGG+ + ++ Sbjct: 240 IIFNLHKNDNQDHLKWIKIDKENF---------LEELMYHLYEQQIQSIIIEGGSKMLNT 290 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPL--EEGYLEK 336 FI ++L D ++ ++ + G +P+ E+ Y +K Sbjct: 291 FIEAQLWDEAVVIKAPNLTLNNGTKAPIFNEKPYRQK 327 >gi|185535483|gb|ACC77864.1| riboflavin biosynthesis protein [Staphylococcus xylosus] Length = 347 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 11/318 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 + +++ A++ ++ G T NP V ++V DG ++G G G HAEVQAL+ A + A Sbjct: 2 SHYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG T Y++LEPC+HYG +PPC IIE GI++VV V D + G + L Q GI V Sbjct: 62 RGGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAVKDTTLPSEGDDI--LEQAGIEVI 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +S+ + + + E +T+K++ S D S IT KN V LR Sbjct: 120 FRSQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G GT+ AD+P+ T R+ + P+++IL ++ + I + P+ I Sbjct: 180 HKHDAVLTGRGTIHADNPQYTTRIE--EGKHPIKVILSKTGEIDFNLDIFQLR-NEPIWI 236 Query: 248 VTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 T+N + L +++ II DC ++ +L L RG+ S+LVE G V F+ S+ Sbjct: 237 YTQNKN----LKTNIEHVEIIALTDC-SIENILKDLYQRGIGSVLVEAGPTVTSEFLESK 291 Query: 307 LVDSIILYRSQIVIGEGG 324 + +ILY + +IG G Sbjct: 292 FTNELILYYAPKIIGGSG 309 >gi|302751598|gb|ADL65775.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 343 Score = 172 bits (435), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 108/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|326571732|gb|EGE21745.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC8] gi|326571813|gb|EGE21819.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC7] gi|326574353|gb|EGE24296.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis CO72] Length = 350 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/361 (34%), Positives = 186/361 (51%), Gaps = 37/361 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLSLDSKII 237 V LRAQS AI+ G GT++AD+P LT R G+ H P +I+D +LS DS Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLS-DSDNY 248 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296 + V DD L +R DL LL LV + +L+E G+ Sbjct: 249 Q---------VLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAGS 285 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 286 ELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRLI 345 Query: 354 Y 354 Y Sbjct: 346 Y 346 >gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae EF01-2] gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verminephrobacter eiseniae EF01-2] Length = 371 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/313 (36%), Positives = 163/313 (52%), Gaps = 12/313 (3%) Query: 21 HVGL--TSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYV 74 H GL TS NP V C+I G+VIGRG T G HAE+ AL A G RGATAYV Sbjct: 17 HQGLYRTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVRGATAYV 76 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 TLEPCSH+GR+ PC ++ GI +VV + DP+ V+G+G L G+ V ++ Sbjct: 77 TLEPCSHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQVGPGAQA 136 Query: 135 KIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 L+ + +R + R + +K+A S D + +A S ITG ++ H RA++ A+ Sbjct: 137 ARELNVGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWRARACAL 196 Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 L GIGTVLADDP L R E P ++LD ++ LD+ I + END Sbjct: 197 LTGIGTVLADDPRLDVRAL-HTERQPALVLLDSALRVPLDACIFAADRAVHLYAAAENDA 255 Query: 254 PVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 AL R + ++ D + DL +L L R V L VE G + + + LVD Sbjct: 256 KRRALEQRGATLAVL-PDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQGLVDE 314 Query: 311 IILYRSQIVIGEG 323 +++Y + +IG G Sbjct: 315 LLVYLAPKLIGPG 327 >gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 128/333 (38%), Positives = 183/333 (54%), Gaps = 14/333 (4%) Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 PV+ +A RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL Sbjct: 19 PVAGAEAERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVAL 78 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L Sbjct: 79 RAAGALARGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLR 138 Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ V + + + L+A + T E R +TLK AV+ D I + ++G + Sbjct: 139 RHGVAVVKGVLRDACDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAA 198 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LR + DA+LVG GT ADDP LT RL P+R++LD L + + Sbjct: 199 RAWVHRLRDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRG 257 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293 AP ++ + P R+ + CR DL+ LL L RGV LLVE Sbjct: 258 GSPAPTLVAHASAAPA-----RRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVE 312 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GGA V F+ + LVD + ++ + + G G+P Sbjct: 313 GGAHVHARFLEAGLVDRVAVFVAPKIAGGDGVP 345 >gi|218506245|ref|ZP_03504123.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli Brasil 5] Length = 137 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 83/136 (61%), Positives = 105/136 (77%), Gaps = 1/136 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVIVGQAVTAIGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVDR-MMESEGK 135 GI VD +E+EG+ Sbjct: 121 DAGIEVDTGALEAEGR 136 >gi|323439574|gb|EGA97294.1| riboflavin specific deaminase [Staphylococcus aureus O11] gi|323442021|gb|EGA99657.1| riboflavin specific deaminase [Staphylococcus aureus O46] Length = 343 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRDHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans C54] Length = 386 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/330 (34%), Positives = 175/330 (53%), Gaps = 13/330 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV AL Sbjct: 5 PSESDDLSWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALR 64 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 65 DAQARGESVAGATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLAR 124 Query: 119 LSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L Q GI V + E + L+A +++R LK+A S D + S ITG Sbjct: 125 LRQAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGP 184 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ HL RA+S +L GIGTVL DDP+LT R + P R ++D F++ D+++ Sbjct: 185 EARADGHLWRARSCVVLTGIGTVLKDDPQLTVR-SVQTPRQPRRAVVDGRFEIPEDARLF 243 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLV 292 VI+ T D +N+ ++ D DL ++ L + + V Sbjct: 244 DG---GEVIVFTARVDAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHV 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 E GA ++ + + + VD +++Y + +++G+ Sbjct: 301 EAGAGLSGALVAAGCVDELLIYMAPMLLGD 330 >gi|312830146|emb|CBX34988.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 347 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 159/317 (50%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMVQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|328951151|ref|YP_004368486.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis DSM 14884] gi|328451475|gb|AEB12376.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis DSM 14884] Length = 390 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 119/376 (31%), Positives = 184/376 (48%), Gaps = 29/376 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D R+M AL+ + G T NP V ++VKDG ++G G G PHAEV AL + Sbjct: 1 MSHLDERYMRRALQLAERARGHTHPNPLVGAVVVKDGRIVGEGYHPRAGLPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H+GR+PPC ++E G+ RVVV DP+ + G GL+ L+Q Sbjct: 61 AGEAARGATVYVTLEPCNHHGRTPPCTTALLEAGVARVVVAARDPNPKAQG-GLERLAQA 119 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V ++E+E + + + R + K A + D + + +TG S+ Sbjct: 120 GVAVQWGVLEAEARAQNEVFFHGLEQNRPFVLWKAATTLDGRVATRTGHAQWVTGPQSRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFKLS 231 H R AI VG+GTVLADDP LT R + + P++++ D + Sbjct: 180 IAHAYRQSLAAIAVGVGTVLADDPALTVRDPEFRPYPWMLEPPPLRDPLKVVFDTQARTP 239 Query: 232 LDSKIIKTALL---APVIIVTENDDPV-LALAFRKKNINIIYCDCRD----LKKLLTILV 283 +++ A V++ P+ A ++ + L+ L L Sbjct: 240 PQARLFAPGPRGEPARVVVFVGAAAPLERTRALEAAGARVVPLPDEEGRPSLRAALEWLW 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----- 338 G+ LL+EGG +A +F+ + LVD + L+ + ++GEG PL G Sbjct: 300 NEGIDGLLLEGGPTLAGAFVRAGLVDKLALFLAPKLVGEG---RPLLAGLGAARMDEALG 356 Query: 339 -MCVRRDYFGSDVCLE 353 RR++ G ++ LE Sbjct: 357 VTLTRREWVGEELWLE 372 >gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS] gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS] Length = 375 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/332 (35%), Positives = 168/332 (50%), Gaps = 12/332 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 MP DA+ ++ ALR + + LT NP V C++ +G V+G+G T G PHAEV A Sbjct: 1 MPSHEQDAQHIATALRLASDALLLTDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMA 60 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L +A G GATAYVTLEPCSH+GR+ PC +I GI RVV + DP+ V+G+G Sbjct: 61 LRDAAAQGHSVEGATAYVTLEPCSHHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGF 120 Query: 117 QWLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L G+ V+ ++ L+ + +R V K + LK+A S D G+ S IT Sbjct: 121 ERLRAAGVEVEVGPGADESRELNIGFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ H RA++ A+L G+GTVL D+P L RL P +++D + D+ Sbjct: 181 SEPARADGHAWRARASAVLTGVGTVLEDNPRLDVRLVPTPRQ-PHLVVVDSRLQTPPDAH 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLL 291 I PV I D A A + + D + DL +L L RGV L Sbjct: 240 IFIAGR--PVWIYAAVRDEAKAAALEARGATVTCLANADGKVDLGAMLKDLAARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 VE G + S I VD +++Y + +IG G Sbjct: 298 VESGHKLNGSLIREGCVDELLVYLAPKLIGRG 329 >gi|15618780|ref|NP_225066.1| riboflavin deaminase [Chlamydophila pneumoniae CWL029] gi|15836404|ref|NP_300928.1| riboflavin deaminase [Chlamydophila pneumoniae J138] gi|16752168|ref|NP_445535.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39] gi|33242231|ref|NP_877172.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183] gi|6225949|sp|Q9Z735|RIBD_CHLPN RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|4377188|gb|AAD19009.1| Riboflavin Deaminase [Chlamydophila pneumoniae CWL029] gi|7189911|gb|AAF38776.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39] gi|8979245|dbj|BAA99079.1| riboflavin deaminase [Chlamydophila pneumoniae J138] gi|33236742|gb|AAP98829.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183] Length = 376 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 115/333 (34%), Positives = 166/333 (49%), Gaps = 26/333 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C++V++ +IG G AY G PHAE A++ A G Sbjct: 11 FMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNASMPISG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 + YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q GI V Sbjct: 71 SDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + ESE + L YL ++ LK A S D + + S IT +++ V LRA Sbjct: 131 IGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AILVG TVL+DDP LT R L P+R++LD + SK+ +P + Sbjct: 191 ESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKT--SPTL 248 Query: 247 IVT-----EN--------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 VT EN D PVL + DL K+ L + + +LVE Sbjct: 249 YVTTERCPENYIKVLDSLDVPVLLTESTPSGV--------DLHKVYEYLAQKKILQVLVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GG + S + R V+S++LY +++G+ P Sbjct: 301 GGTTLHTSLLKERFVNSLVLYSGPMILGDQKRP 333 >gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herbaspirillum seropedicae SmR1] gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/307 (35%), Positives = 162/307 (52%), Gaps = 12/307 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81 T+ NP V C+IVKD +IG G T G HAE+QA+ +A G + RGAT YVTLEPCSH Sbjct: 15 TTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDVRGATVYVTLEPCSH 74 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHA 140 +GR+PPCA +I G+ RVV + DP+ V+G+GL L GI V ++E E + Sbjct: 75 FGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVSCGLLEEEARDINIG 134 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R + +K A S D + S ITG +++ H+ RA++ AI+ GIGT+ Sbjct: 135 FLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIWRARACAIMAGIGTI 194 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DD +LT R P RI++D +S ++++I+ + T DD A Sbjct: 195 QKDDAQLTVRAIETPRQ-PRRIVIDSKLIVSPEARVIQG---GNTWVFTATDDRDKRAAL 250 Query: 261 RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + +I DL L+ L R + L VE GA + + + VD +++Y + Sbjct: 251 EAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLREGCVDELLVYLA 310 Query: 317 QIVIGEG 323 +IG+G Sbjct: 311 PSLIGDG 317 >gi|257055601|ref|YP_003133433.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomonospora viridis DSM 43017] gi|256585473|gb|ACU96606.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomonospora viridis DSM 43017] Length = 349 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 119/322 (36%), Positives = 157/322 (48%), Gaps = 39/322 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL S G TS NP V +I+ +G +G G T PHAEV AL EAGE ARG Sbjct: 15 MEVALALSAGVRGNTSPNPPVGAVILDAEGRRVGTGATQPPPGPHAEVVALREAGERARG 74 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA VTLEPCSH+GR+PPC Q +++ G+ V V DP SG G + L G+ V Sbjct: 75 GTAVVTLEPCSHHGRTPPCTQALLDAGVAAVRYAVADPHPAASG-GAERLRAAGVDVAGG 133 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E L A+L R+ R H+T K A S D + A S I+G S+ +VH LR Sbjct: 134 VLAEEVASGPLRAWLHRERTGRPHVTWKYAASLDGRVAAADGTSRWISGPTSRAEVHALR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD----PHFKLSLDSKIIKTAL 241 A DAI+VG GTVL DDP LT R L P+R+++ P LDS Sbjct: 194 AAVDAIVVGTGTVLTDDPWLTVRTPDGELAPRQPLRVVVGTRGIPEGARVLDS------- 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + D ++L +L RGV +L+EGG +A + Sbjct: 247 ----------------------TAETVRIASHDPDEVLALLSERGVVDVLLEGGPTLAGA 284 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ + VD II Y + ++G G Sbjct: 285 FVAAGRVDRIIAYVAPTLLGAG 306 >gi|320139809|gb|EFW31673.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MRSA131] Length = 343 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 158/314 (50%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|160885546|ref|ZP_02066549.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483] gi|156109168|gb|EDO10913.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483] Length = 351 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/311 (35%), Positives = 166/311 (53%), Gaps = 17/311 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181 V ++E E + + ++T R +ITLK A S D I + +P ++ ++ Sbjct: 129 EVTVGILEEECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P ++ TE P + NI I D L++++ +L R + SLLVEGG+ + Sbjct: 247 --PTLVFTEKKQPA------RTNITYISIDFNHNPLEQIMEVLYQRKIQSLLVEGGSQLL 298 Query: 300 HSFINSRLVDS 310 SFIN L D Sbjct: 299 QSFINDELWDE 309 >gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 349 Score = 171 bits (433), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/323 (32%), Positives = 171/323 (52%), Gaps = 17/323 (5%) Query: 4 SSFDARFMSAALRF-SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D + M AL+ S+ G+ S NP V C+IVK +I +G G H E+ AL++ Sbjct: 6 SKNDTQNMVIALKLASQGKYGVKS-NPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +A+GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L Sbjct: 65 INHQAQGATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLENA 124 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E++ ++ + + KIA+S D M+ S IT +++ Sbjct: 125 GIEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTRL 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LRA AI+ G GT++ D+P +T RL+ + +P+R+++D +++ S I A Sbjct: 185 DVQKLRANHQAIMTGSGTIINDNPLMTVRLDNI-NLTPLRVVIDSKNQITNTSLNIFNA- 242 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 D P L L N + DL +LT L +G+ ++L+E G + S Sbjct: 243 ----------DAPTLIL--NPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPKLIGS 290 Query: 302 FINSRLVDSIILYRSQIVIGEGG 324 I S L+D I+Y + I++G Sbjct: 291 MIKSNLIDEFIIYMAPILMGSNA 313 >gi|302343809|ref|YP_003808338.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM 2075] gi|301640422|gb|ADK85744.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM 2075] Length = 377 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/334 (37%), Positives = 186/334 (55%), Gaps = 10/334 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM+ AL +R +G +S NP+V L+V +G ++GRG G PHAE AL +AG Sbjct: 9 LDRHFMARALALTRRGLGRSSPNPAVGALVVAEGRIVGRGWHVKKGQPHAEPLALAQAGA 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGAT YVTLEPC+H G +PPC Q I+ G+ RVV DP+ V+G G +L+ +G+ Sbjct: 69 AARGATLYVTLEPCNHQGATPPCTQAILRAGVARVVYGAGDPNPTVAGGGGAFLAGRGLA 128 Query: 126 VDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ + +E F H +LT + R H+ LK A + D A S ITG S+ VH Sbjct: 129 VEAGVLAEQCAFEHRFFLTHITKGRPHVILKTAATLDGKTATASGDSRWITGPASRRFVH 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA---- 240 LR D + VG+GT L DDP+LTCRL G ++ P+R+I+D ++ +K+ A Sbjct: 189 RLRGWCDCVCVGVGTALVDDPQLTCRLPGGRD--PLRVIVDSRLRIDHRAKVFDPAAGGG 246 Query: 241 -LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 L+A + D + + A+ ++ DL +LL L RGV +L+EGGA + Sbjct: 247 CLVACGPLARPADMERLRAVGAEVLRLSPAAGGGLDLAELLDHLGRRGVIGMLLEGGATL 306 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 A F++ LVD ++ + + ++G G +P+ G Sbjct: 307 AWGFLSQGLVDEVMYFFAPKLLG-GATAAPMLGG 339 >gi|294900049|ref|XP_002776874.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC 50983] gi|239884075|gb|EER08690.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC 50983] Length = 332 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/313 (39%), Positives = 171/313 (54%), Gaps = 11/313 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL S T NP V C++V+ G +V+G+G G PHAEV AL + + Sbjct: 11 DEDFMRMALVESEEGRMTTPPNPWVGCILVQHGQVVVGKGHHVRKGGPHAEVNALRDMIQ 70 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 TAYVTLEPCSHYG +PPC + +IE G+ RVVV V+DPD +VSGRG+Q + + G+ Sbjct: 71 SGSTLTAYVTLEPCSHYGSTPPCCEALIEVGVGRVVVGVEDPDPKVSGRGIQRMREAGVD 130 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E + L AYL ++ + K A S + M+ S ITG ++ H Sbjct: 131 VKTGCLTGEIRESLRAYLKQRAMGLPLVVGKAAASLNGMVCCENGSSQWITGREAREDSH 190 Query: 185 -LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LRA S AI+VG+GTVLADD LT R + GL E P+R++LDP ++ +KI+ T Sbjct: 191 RTLRALSQAIVVGVGTVLADDCSLTVRGVEGL-EKQPLRVVLDPSARILRTAKILNTEEA 249 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVA 299 +++V D K I + D DL +L L RGV +LVEGGA Sbjct: 250 PTLVVVGRGAD---RSGLEKVEILEVELDQNGELDLGGVLRHLADRGVFQVLVEGGAKTL 306 Query: 300 HSFINSRLVDSII 312 FI ++VD ++ Sbjct: 307 TKFIEKKMVDELV 319 >gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Azoarcus sp. BH72] gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azoarcus sp. BH72] Length = 363 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/304 (37%), Positives = 171/304 (56%), Gaps = 11/304 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 T+ NP V C++V+DG ++G G G HAEV AL AGE A GATAYVTLEPCSH+GR Sbjct: 25 TTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGERAAGATAYVTLEPCSHFGR 84 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLT 143 +PPC + ++ G+RRVV ++DP+ V+G GL L GI ++ESE + +++ Sbjct: 85 TPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELNIGFIS 144 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R R + LK A + D +A S ITG +++ H RA++ AIL GIGTV D Sbjct: 145 RMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIGTVRED 204 Query: 204 DPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 DP+LT R G+ E P+R+++D ++ +++I++ APV+I T ++ A R Sbjct: 205 DPQLTVR--GVPCERQPLRVVVDARLEIGREARILQG---APVLIATAIEEGERAAELRA 259 Query: 263 KNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ K LL L RG+ L VE G + S + VD ++LY + + Sbjct: 260 AGHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLYMAPM 319 Query: 319 VIGE 322 ++G+ Sbjct: 320 LVGD 323 >gi|94264512|ref|ZP_01288299.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] gi|93455071|gb|EAT05298.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] Length = 374 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 188/372 (50%), Gaps = 22/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GAT YVTLEPC+H GR+PPC++ II GIRRVV + DP G G + L Sbjct: 61 AGEAAAGATIYVTLEPCNHLGRTPPCSEAIIAAGIRRVVYGLADPHEVARG-GAKRLESA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++ E + ++ R R + LK AVS D I A S ITG ++ Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSK-IIKT 239 H LR QSDAILVG GTVLADDP LT RL G + P+R++LD + ++ +I+ Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLIQQ 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--------------CDCRDLKKLLTILVGR 285 + A I A A ++ C DL ++L L Sbjct: 240 SPAATWIFCAPEAATERATALEAAGARVVRLEPTPGGQSGPEPNCSGLDLWQVLRELAAN 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341 GV LLVEGG V SF+ L D + + ++IG G+P +PL ++K V Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359 Query: 342 RRDYFGSDVCLE 353 G D+ L Sbjct: 360 SSRRLGDDIMLR 371 >gi|2766596|gb|AAB95439.1| homologue of Bacillus subtilis ribG [Shigella flexneri] Length = 245 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/243 (42%), Positives = 140/243 (57%), Gaps = 12/243 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEPEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E + P+RI++D +++ + Sbjct: 183 QRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEH 242 Query: 235 KII 237 +I+ Sbjct: 243 RIV 245 >gi|326573500|gb|EGE23466.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E] Length = 350 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 39/362 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARED 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-LDSKI 236 V LRAQS AI+ G GT++AD+P LT R G+ H P +I+D +LS LD Sbjct: 190 VQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDD-- 247 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295 V DD L +R DL LL LV + +L+E G Sbjct: 248 ---------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 + ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344 Query: 353 EY 354 Y Sbjct: 345 IY 346 >gi|89073130|ref|ZP_01159669.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium sp. SKA34] gi|89051083|gb|EAR56540.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium sp. SKA34] Length = 374 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 184/336 (54%), Gaps = 24/336 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++A Sbjct: 3 TNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIAIGDEILGEGFHYRAGEPHAEVFALKQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI RV+ + DP+ V+GRG++ L + G Sbjct: 63 GTRAKGATAYVTLEPCSHYGRTPPCAEALIKSGISRVICAMVDPNPLVAGRGVEMLQKAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +++ E + A++ + K ++ LK+A S D +A S ITG ++ Sbjct: 123 VDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHS------PMRIILDPHFKLS 231 V RAQ+ AIL TV+ADDP L R + L E++ P+R+I+D +L+ Sbjct: 183 VQRHRAQAGAILSTSATVIADDPSLNVRWSELGTLIQDEYAQADVRQPIRVIIDSQNRLT 242 Query: 232 LDSKII----KTALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGR 285 ++ KT L + + D V + R+ N + DL L+ L Sbjct: 243 PAYQVFHLPGKTILARTMSGNEDWPDSVSQWIIPTRENNQQL------DLTLLMRKLAEN 296 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G+ + VE GA +A + ++LVD +ILY++ ++G Sbjct: 297 GINHIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMG 332 >gi|295088113|emb|CBK69636.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides xylanisolvens XB1A] Length = 351 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 181/351 (51%), Gaps = 22/351 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T + R ITLK A S D+ I + P+ + ++ Sbjct: 129 EVTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLL 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI++ L D + + G + S ++ ++ NF ++F + Sbjct: 299 QSFIDNELWDEAYIEKC-----PGRLHSGVKAPQMDDNFSYSIEEHFERQI 344 >gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus bovienii SS-2004] gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus bovienii SS-2004] Length = 369 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/333 (35%), Positives = 172/333 (51%), Gaps = 22/333 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++MS AL + TS NP+V C+IV+ ++G G G PHAEV AL AG Sbjct: 2 TLDEKYMSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +A+GATAYVTLEPCSH+G++PPCA +I GI RVV + DP+ +V+GRGL L Q GI Sbjct: 62 GKAKGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGI 121 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++ +E + +L R ++ LK+ S D +A S IT ++ V Sbjct: 122 AVEHGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232 RAQ AIL TVLADDP LT R + L Q P+RII+D +++ Sbjct: 182 QQFRAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTP 241 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288 ++++ + T D N++ I DL L+ L R + Sbjct: 242 QHQVVQQVGQC-WLARTHTDQQQW-----PDNVDHIVLPAHGGGVDLVLLMMQLGKRQIN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 S+ E G +A + ++ LVD +ILY + V+G Sbjct: 296 SVWAECGPVLAGALLSLGLVDELILYIAPKVLG 328 >gi|298695036|gb|ADI98258.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus ED133] Length = 343 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 107/314 (34%), Positives = 157/314 (50%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ + Sbjct: 61 TIYITLEPCSHFGLTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRDHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|298482442|ref|ZP_07000628.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22] gi|298271421|gb|EFI12996.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22] Length = 351 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 113/311 (36%), Positives = 166/311 (53%), Gaps = 17/311 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T + R ITLK A S D+ I + P+ + ++ Sbjct: 129 EVTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVA 299 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 247 --PTLIFTEKQQP------EKKNITYITINFSHNPLKQIIEALYQRKIQSLLVEGGRQLL 298 Query: 300 HSFINSRLVDS 310 SFI++ L D Sbjct: 299 QSFIDNELWDE 309 >gi|239617610|ref|YP_002940932.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1] gi|239506441|gb|ACR79928.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1] Length = 345 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 122/354 (34%), Positives = 180/354 (50%), Gaps = 20/354 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +FM A+ +R GL + NP V +IVK+G ++ G Y G HAE+ A+E A Sbjct: 2 DEKFMELAIEEARKGEGLVNPNPLVGAVIVKNGKILSTGYHEYFGGRHAEIVAIENAKKM 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GA YVTLEPC HYG++PPC II G V + DP+ V G+G + L G Sbjct: 62 GYDIKGAEIYVTLEPCVHYGKTPPCTDRIIREGFSAVYIGTLDPNPMVHGKGEEKLKNAG 121 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + K + + K + LK+A+S D I IT ++ + Sbjct: 122 ICVKHGILEVKAKELIEVFAKYMKTKMPFVALKLAMSLDGFITSMRGKRERITSDRAREK 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-LDSKIIKTAL 241 VH LR AI++G T ++DDP LTCR + + +P+RIILD K + ++ K+ A Sbjct: 182 VHRLRNYYSAIMIGSKTAISDDPLLTCRYS-FCKRNPIRIILDRSGKTAKVNLKLF--AQ 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T +++ +N+ +I D + +L L G+ S+LVEGGA VA Sbjct: 239 EGRTIIFTSSNERW------PENVEVIRKDDLSPEPILKALGKMGIDSVLVEGGANVASQ 292 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 FIN D I L+ + I G G SP + + K F R + + D+ E I Sbjct: 293 FIN--YADKIHLFYAPIAFGNG--LSPFDRKF--KGFTTKRVEVYHPDIYWELI 340 >gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus Vesicomyosocius okutanii HA] gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus Vesicomyosocius okutanii HA] Length = 349 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 100/320 (31%), Positives = 173/320 (54%), Gaps = 15/320 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S + + M+ A++ + +NP V C+IVK +I +G G H E+ AL++ Sbjct: 6 SKNETQNMTIAIKLALQGRYGVKSNPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQQI 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 +A GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L G Sbjct: 66 NYKAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKYAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +++++ I ++ R + I K+A+S D M+ S IT +++ Sbjct: 126 IEVKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVARLD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V LRA AI+ G GT++ D+P +T RL+G+ P+R+++D +++ D+ + Sbjct: 186 VQKLRANHQAIITGSGTIINDNPLMTVRLDGVNS-KPLRVVIDSKNQIT-DTSLNIFNTD 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 AP +I+ ++ VLA DL +LT L +G+ ++L+E G + + Sbjct: 244 APTLILNPDNTKVLA------------SGKLDLSNVLTQLGNQGINNVLLEAGPKLIGAM 291 Query: 303 INSRLVDSIILYRSQIVIGE 322 I L+D I+Y + I++G Sbjct: 292 IKINLIDEFIIYMAPILMGS 311 >gi|18976434|ref|NP_577791.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638] gi|18891968|gb|AAL80186.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638] Length = 354 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 172/327 (52%), Gaps = 20/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +FM ALR +R GLT+ NP V ++VKD +IG G G HAEV A+E+A Sbjct: 3 DEKFMKLALRLARKGEGLTNPNPMVGAVLVKDNKIIGTGWHKRFGDKHAEVNAIEDAKRK 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G GAT YVTLEPCSH+G+ PPCA IIE GI RVV+ + DP+ VSGRG++ L + G Sbjct: 63 GYTIEGATLYVTLEPCSHWGKQPPCADRIIEEGISRVVIAMVDPNPLVSGRGIKKLKEAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++E E K ++ K +++K+A++ D I S IT ++ + Sbjct: 123 VEVKVGVLEEEAKKLNEIFVKYITTKIPFVSIKLALTLDGFIATQNFKSKWITDEKARGE 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V LR + AI+VG T++ D+P L CR+ G E ++ILD K+ + IK Sbjct: 183 VQKLRRRHMAIMVGANTIIQDNPRLDCRIKGCTEK--FKVILDSQGKV---ADFIKKGHK 237 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL--VGR-GVTSLLVEGGAAVA 299 V + V+ R + I C+ + + IL +G G+ S+L+EGG +A Sbjct: 238 LRVF----ENGKVIVFTKRPEKFKGI-CEAYPITEPFEILKKLGEIGIDSVLIEGG-RIA 291 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 F+N D + L+ + G G P Sbjct: 292 GEFLN--FADKLYLFYGPKIFGRGIKP 316 >gi|332827503|gb|EGK00249.1| riboflavin biosynthesis protein RibD [Dysgonomonas gadei ATCC BAA-286] Length = 355 Score = 170 bits (430), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 177/342 (51%), Gaps = 23/342 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + + ++M L+ ++ G TS NP V +IV G +IG G G HAEV A+ Sbjct: 2 TVEEKYMYRCLQLAQNGRGFTSPNPMVGAVIVHQGKIIGEGYHRQYGKAHAEVNAVNSVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++A + +T YV+LEPCSH+G++PPCAQ II+ I +VVV DP VSGRG++ L + Sbjct: 62 DKALLKDSTIYVSLEPCSHHGKTPPCAQLIIDNQIPKVVVACLDPYPAVSGRGIKMLQDR 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS-----VPITG 176 GI V ++E E + + T Q R +I LK A +QD I C PI+ Sbjct: 122 GIEVSVGVLEKEAQALNRVFFTAQTRNRPYIYLKWAQTQDGFIDKERCDGEKPQPTPISN 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 S+ VH RA++ I++G T + D+P LT R +P+RII+D ++ ++ Sbjct: 182 EFSRMLVHKKRAETAGIMIGTNTAVNDNPSLTTRF--WYGKNPVRIIIDRQGRIPSGYQL 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRD--LKKLLTILVGRGVTSLLV 292 + II TE D + K++ ++IY D + + + +IL + S+LV Sbjct: 240 FDGKV--KTIIFTEKD------LYEKQSDSVIYIRTDFNESLFENIFSILKSHKIDSVLV 291 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 EGG + S I+ ++ D + S G+ G+ +P GY+ Sbjct: 292 EGGRELLQSLIDIQMWDEAYIETSNACFGK-GVKAPDIRGYV 332 >gi|89255521|ref|YP_512882.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica LVS] gi|115314040|ref|YP_762763.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Francisella tularensis subsp. holarctica OSU18] gi|156501455|ref|YP_001427520.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010294|ref|ZP_02275225.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. holarctica FSC200] gi|254366949|ref|ZP_04982986.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica 257] gi|254368485|ref|ZP_04984502.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp. holarctica FSC022] gi|290954250|ref|ZP_06558871.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica URFT1] gi|295312314|ref|ZP_06803101.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica URFT1] gi|89143352|emb|CAJ78519.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica LVS] gi|115128939|gb|ABI82126.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Francisella tularensis subsp. holarctica OSU18] gi|134252776|gb|EBA51870.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica 257] gi|156252058|gb|ABU60564.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121379|gb|EDO65580.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp. holarctica FSC022] Length = 355 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 116/351 (33%), Positives = 173/351 (49%), Gaps = 18/351 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GIIV-----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI V ++ + KIF H Q K+ + K A+S D I + S I+ Sbjct: 121 GITVEVGLLEKQAQELNKIFFH----YQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSH 176 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + H LR DAIL+G T++ D+P L R+N + R IL H + + Sbjct: 177 QAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHSTRFILANHLTTINHNWRV 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVE 293 A I V +A + I + L L+ + G+TSLLVE Sbjct: 237 LDQRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +SFIN +LV+ Y + ++I + +P ++ L N + VR D Sbjct: 297 GGNKTLNSFINQKLVNEFYTYLAPVIIADY---NPKQQ--LSFNQISVRED 342 >gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701] gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701] Length = 354 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 116/337 (34%), Positives = 180/337 (53%), Gaps = 14/337 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G TS NP V L++ +G+++G G A G PHAEV AL +AGE ARG Sbjct: 1 MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T VTLEPC H+GR+PPC++ +I GIRRV+V ++DPD RV+G+G++ L Q G ++ Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLVG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + +SE + A+ R R LK A+S D + S I+G S+ VH LRA Sbjct: 121 VRQSEARNLNAAFCHRLRSGRPLGILKWAMSVDGRTALPNGASQWISGPASREWVHRLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++VG GT+ DDP LT R G + P+R+++ L +++ + AP ++ Sbjct: 181 RCDAVIVGGGTLRTDDPLLTSR--GRRAIEPLRVVISRELGLPEQAQLWDQS-TAPTLVA 237 Query: 249 TENDDPV---LAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P L L A + + + C+ + L+ L RG +L E G ++A + + Sbjct: 238 HGPEAPEPDRLQLDALGVERLELAGCEPLE---LMEALAQRGCNQVLWECGPSLAAAALR 294 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 V + + ++G +PL G L+ N M + Sbjct: 295 QGCVQRVAAVMAPKLLGGTAARTPL--GDLQLNSMAM 329 >gi|239939894|ref|ZP_04691831.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus NRRL 15998] gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus NRRL 11379] gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL 15998] gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL 15998] Length = 366 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/347 (34%), Positives = 181/347 (52%), Gaps = 13/347 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP+ + +G G L Sbjct: 63 ADDRARGGTAYVTLEPCNHTGRTGPCVQALLAAGISRVVYAVGDPNPQATGGG-DTLRAA 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V++ ++ E A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVQVEQGLLAEEAGAGNAAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239 VH LRA++DA+LVG GT DDP+L R ++G + P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLGVRGIDGATQ--PLRVVVDTNAAAVKPGARVLDA 239 Query: 240 ALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 AP +I +D P L A + DL LL L RGV S+L+EGG Sbjct: 240 --TAPTLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLESLHTRGVRSVLLEGGPT 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 +A +F+ + VD ++ Y + +++G G P+ L + + +R D Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTISQALRLD 342 >gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC 39149] gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC 39149] Length = 353 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 170/331 (51%), Gaps = 32/331 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL +AG ARG Sbjct: 10 MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGRRARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR PC+ +I G+ RVV+ V DP+ SG G L G+ V+ Sbjct: 70 GTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASG-GAATLRAGGLDVEVG 128 Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R E+E G + A+LT ++T K A + D A S+ IT ++ VH Sbjct: 129 VRAAEAEAGNV---AWLTSMRRGWPYVTWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR DA++ G+GTVLADDP LT R L P+R+++D + D+++ A Sbjct: 186 LRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVVVDTFGRTPADARVRDGAAR 245 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 V E P D R DL LL L RGV + L+EGG +A Sbjct: 246 TWVATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPKLAG 289 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 +F+ + LVD ++ Y + ++G G P+ L + Sbjct: 290 AFLAAGLVDRVVGYVAPKLLGAG--PTALAD 318 >gi|90579822|ref|ZP_01235630.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum S14] gi|90438707|gb|EAS63890.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum S14] Length = 374 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 181/335 (54%), Gaps = 22/335 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++A Sbjct: 3 TNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIANGDEILGEGFHYRAGEPHAEVFALKQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ V+GRG++ L + G Sbjct: 63 GVRAKGATAYVTLEPCSHYGRTPPCAEALIKSGVSRVICAMVDPNPLVAGRGVEMLQKAG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V +++ E + A++ + K ++ LK+A S D +A S ITG ++ Sbjct: 123 VDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLS 231 V RAQ+ AIL TV+ADDP L R + L P+R+I+D +L+ Sbjct: 183 VQRHRAQAGAILSTSATVMADDPSLNVRWSELGTQIQDEYPQADVRQPIRVIIDSQNRLT 242 Query: 232 LDSKIIK---TALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 ++ +LA I E+ D + ++N + DL L+ L G Sbjct: 243 PAYQLFHLPGETILARAEIGNEDWPDSVSQWIIPTRENSQQL-----DLTLLMRKLAENG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + VE GA +A + ++LVD +ILY++ ++G Sbjct: 298 INHIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMG 332 >gi|326560692|gb|EGE11060.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 46P47B1] Length = 350 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 185/362 (51%), Gaps = 39/362 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGTEARED 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-LDSKI 236 V LRAQS AI+ G GT++AD+P LT R G+ H P +I+D +LS LD Sbjct: 190 VQRLRAQSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDD-- 247 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGG 295 V DD L +R DL LL LV + +L+E G Sbjct: 248 ---------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVLIEAG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 + ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344 Query: 353 EY 354 Y Sbjct: 345 IY 346 >gi|313680606|ref|YP_004058345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oceanithermus profundus DSM 14977] gi|313153321|gb|ADR37172.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oceanithermus profundus DSM 14977] Length = 380 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 118/375 (31%), Positives = 181/375 (48%), Gaps = 23/375 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D RFM AL + G TS NP V ++V G ++G G G PHAEV AL Sbjct: 1 MSFSDPDRRFMQRALALAERARGHTSPNPIVGAVVVSGGRIVGEGFHPRAGEPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGAT YVTLEPC+H+GR+PPC+ ++E G+ RVV DP SG G + L Sbjct: 61 RQAGEAARGATVYVTLEPCNHHGRTPPCSLALLEAGVSRVVYAAADPG-ETSGGGAERLR 119 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ V+ ++E E ++ A+ R + K A++ D + G G ++ +S Sbjct: 120 RAGVRVEAGLLEEEARVQNRAFFHAAAFGRPFVLWKAALTLDGRVAARGRGGEAVSNTLS 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS----------PMRIILDPHFK 229 H R A+ VG GTV ADDP LT R + + P++++ D K Sbjct: 180 HRVAHGYRQACAAVAVGAGTVRADDPALTVRAPDFRAFAAMVEPPPLRDPLKVVFDSQAK 239 Query: 230 LSLDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTI 281 +++ + ++ V E+ D A ++ + ++ L Sbjct: 240 TPPSARLFEPGPRGEPARVLVFVGEDADADRVQALEAAGAEVVSLPAGEGGLSVEAALAE 299 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NF 338 L RGV SLL+EGG +A SF+ + VD + + ++GEG G+ G +++ F Sbjct: 300 LYRRGVDSLLLEGGPRLAGSFVRAGRVDRAAFFVAPRILGEGRGLIEGFSFGSMQRAMRF 359 Query: 339 MCVRRDYFGSDVCLE 353 + R + D+ LE Sbjct: 360 LPERSEVLEGDLWLE 374 >gi|257066652|ref|YP_003152908.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM 20548] gi|256798532|gb|ACV29187.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM 20548] Length = 357 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 109/316 (34%), Positives = 157/316 (49%), Gaps = 15/316 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M +R G TNP V +++K+G +I +G C HAE+ E A G Sbjct: 6 LMRECFDLARKGAGKVLTNPMVGAILIKNGEIIAKGYHKSNTCDHAEIDCFNNLKESAEG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT V LEPCSH+G+ PPC +I+ ++RVV+ D + +V GL L + GI ++ Sbjct: 66 ATLIVNLEPCSHFGKHPPCVDEVIKRKVKRVVIANLDTNPKVD--GLSKLKEAGIEVITG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E EG+ + R + LK A S D I A S IT S+ VH LR+ Sbjct: 124 VLEDEGRKLNEKFFFNMENNRPLVALKYAQSLDGKIATASFDSKWITNEESRAYVHKLRS 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG T+ D+P LT R+ G +P RIIL + D ++ + I Sbjct: 184 EYDAILVGANTLRQDNPRLTSRIEGGV--NPYRIILSDKLDIDKDREVFRENADKKTYIA 241 Query: 249 TENDDPVLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +D + N II C D R DLK LL L R + S+LVEGG+ + +SF+ Sbjct: 242 TISDKDIDI------NAEIIRCKEKDGRVDLKDLLDKLYERNIGSVLVEGGSIINNSFLE 295 Query: 305 SRLVDSIILYRSQIVI 320 LVD I + + I++ Sbjct: 296 EDLVDKIYQFMAPIIV 311 >gi|149909347|ref|ZP_01898003.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp. PE36] gi|149807664|gb|EDM67612.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp. PE36] Length = 440 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/359 (31%), Positives = 175/359 (48%), Gaps = 41/359 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M A+ ++ T+ NP+V C++VK VIG G G HAEV AL AG++ Sbjct: 44 DHLHMQRAIALAQKGRFTTAPNPNVGCVLVKADKVIGEGFHLRAGEAHAEVHALNSAGDD 103 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSHYGR+PPCA ++ + VV+ + DP+ +V+G+G+ L GI V Sbjct: 104 AQGATCYVTLEPCSHYGRTPPCAAALVNANVHEVVIAMVDPNPQVAGKGIAILIAAGIKV 163 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++ ++ R E+R + LK+A S D + S ITG +++ V + Sbjct: 164 RVGLLSAQSHALNPGFILRMREQRPFVRLKMAASLDGRTALKNGESKWITGSAARSDVQV 223 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------------------QEHSPMRII 223 RAQ+ AIL TV+ DD L R + L Q P+R++ Sbjct: 224 YRAQASAILSTASTVIMDDASLNVRYSELGTSQADYPLDYAEKSLIQAEQSQVRQPIRVV 283 Query: 224 LDPHFKLS--LDSKIIKTALLA-------------PVIIVTENDDPVLALAFRKKNINII 268 LD H +L L+ + L A V + T+N L + I Sbjct: 284 LDNHRRLDAHLEPSAKELKLFAQPGQILLVNGVKNTVNVATKNSSTEQLLVNESVSRIEI 343 Query: 269 YCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 D DL +L+T L + + L VE GA +A + + ++LVD II+Y + ++G+ Sbjct: 344 EQDSHHNIDLNQLMTTLAQQNINDLWVEAGATLAGALLENKLVDEIIIYLAPKLMGDSA 402 >gi|70726154|ref|YP_253068.1| riboflavin specific deaminase [Staphylococcus haemolyticus JCSC1435] gi|68446878|dbj|BAE04462.1| riboflavin specific deaminase [Staphylococcus haemolyticus JCSC1435] Length = 347 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 105/318 (33%), Positives = 164/318 (51%), Gaps = 11/318 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 + FM A++ ++ G T NP V ++V +G ++G G G HAEVQAL+ AG+EA Sbjct: 2 SNFMEYAIQLAQMVKGQTGINPPVGAVVVNNGRIVGLGAHLKQGEKHAEVQALDMAGKEA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G Y++LEPC+H+G +PPC IIE G+ +V+ V D + G + L Q GI V+ Sbjct: 62 KGGIIYISLEPCTHFGSTPPCVNKIIEFGLSKVIYAVKDTTLPSEGDAI--LEQAGIDVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 E + + + IT+K++VS D S IT K V+ LR Sbjct: 120 YQYSEEAAALYKDFFKAKSGQIPEITMKVSVSLDGKQATDLGQSKWITNSEVKQDVYHLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 DA+L G GT+ AD+P T R+ NG +P+RI+L + ++ + + + V Sbjct: 180 HTHDAVLTGNGTINADNPLYTTRIPNG---KNPIRIVLAKSGNVDFTKQLFQDS-SSEVW 235 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I TEN L +NI +I D LK +L + RG+ SLL+E G + F+ + Sbjct: 236 IYTENQ----TLESPNRNIKVICIDKCYLKDILKDIYKRGIGSLLIEAGPRITSKFLQTD 291 Query: 307 LVDSIILYRSQIVIGEGG 324 ++ +I+Y + +IG G Sbjct: 292 FINQLIIYYAPKIIGGSG 309 >gi|149372326|ref|ZP_01891514.1| riboflavin biosynthesis protein ribD [unidentified eubacterium SCB49] gi|149354716|gb|EDM43279.1| riboflavin biosynthesis protein ribD [unidentified eubacterium SCB49] Length = 340 Score = 169 bits (429), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 165/324 (50%), Gaps = 24/324 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68 M ++ ++ +G T NP V +IV D +IG G G PHAEV A+ +E Sbjct: 1 MFRCIQLAKKGLGYTYPNPLVGSVIVVDDKIIGEGWHLEAGKPHAEVNAINSVTDEKLLE 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 AT YV+LEPCSH+G++PPCA I+ GI+ +V+ DP+ +V+G+G+ L Q G V Sbjct: 61 KATIYVSLEPCSHFGKTPPCADLIVTKGIKNIVIGSTDPNPKVAGKGIIKLMQAGCKVKV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKNQVH 184 +++ E + T Q +KR +I LK A +QD I V IT ++ +VH Sbjct: 121 GVLQKECDALNKRFFTFQTKKRPYIFLKWAETQDGFIAPKTRNEQAPVWITNKYARQRVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +RA AIL+G T LAD+P LT R + +P+R+++D K+ + I A Sbjct: 181 QMRAAEQAILIGTNTALADNPSLTTR--DVIGSNPIRVLIDRQLKVPKTAAIFDEQ--AK 236 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT-----ILVGRGVTSLLVEGGAAVA 299 I++TE +N ++ +C D K L +L + S++VEGGA Sbjct: 237 TIVITEKS---------AENTETVHFECVDFNKPLAHQICEVLFKHEIESVIVEGGAQTL 287 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 +FI+ L D +Y+ + EG Sbjct: 288 QTFISENLWDEAHIYKGAVSFTEG 311 >gi|296114110|ref|YP_003628048.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4] gi|295921804|gb|ADG62155.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4] Length = 350 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 185/366 (50%), Gaps = 47/366 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I + D+ + FL A T ++ LK A S D A S ITG Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232 ++ V LRA+S AI+ G GT++AD+P LT R G+ H P +I+D +LS L Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDL 245 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 D V DD L +R DL LL LV + +L Sbjct: 246 DD-----------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348 +E G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+ Sbjct: 281 IEAGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGN 340 Query: 349 DVCLEY 354 D+ L Y Sbjct: 341 DIRLIY 346 >gi|240103311|ref|YP_002959620.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus gammatolerans EJ3] gi|239910865|gb|ACS33756.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus gammatolerans EJ3] Length = 408 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 137/227 (60%), Gaps = 6/227 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E+ Sbjct: 49 MSNEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGKVIGVGWHKRFGEKHAEVNAIED 108 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP+ VSGRG++ + Sbjct: 109 AKRKGHDVRGATMYVTLEPCSHWGKQPPCADRIIREGFKRVVVAMVDPNPLVSGRGIEKM 168 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V+ ++E E + ++ +K +++K+A++ D I S ITG Sbjct: 169 KKAGIEVEVGVLEDEARKLNEIFIKYVTKKMPFVSIKLALTLDGFIATETGSSQWITGEK 228 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD Sbjct: 229 ARQKVQELRRRHMAIMVGSGTVLADNPRLNCRLENCPEK--IKVILD 273 >gi|198273955|ref|ZP_03206487.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135] gi|198273033|gb|EDY97302.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135] Length = 346 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 180/342 (52%), Gaps = 18/342 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M ++ +R + + NP V +IV+DG +IG G G HAEV A+ Sbjct: 2 TIDEKYMRRCIQLARNGICHAAPNPMVGAVIVRDGKIIGEGYHVRCGEGHAEVNAIASVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E+ + AT YV+LEPCSHYG++PPCA II GI RVVV DP V+GRG+Q L Sbjct: 62 DESLLKDATIYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCVDPFSLVAGRGIQKLRDA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFIS 179 GI V ++E E + + A++T ++KR +ITLK A S D + + +V ++ +S Sbjct: 122 GIEVTVGVLEKECRELIRAFVTFNLKKRPYITLKWAQSADGFLDIRREDGNAVRLSTPLS 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH +RA+ AILVG T D+P LT R +P+R+++D L + Sbjct: 182 TLAVHKMRAEQKAILVGRRTAQLDNPSLTVR--EWYGQNPLRLVIDRQLTLPPHLHLFDG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + P ++ TE + +N+ + D L +++ +L + + +LLVEGG+ Sbjct: 240 S--TPTLVFTEKEKAA------TQNLTYVTLDFGQNILPQIMQVLYEQKIQTLLVEGGSQ 291 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339 +F+ L D + +++ + + GIP+PL E F Sbjct: 292 TLQAFLEQGLWDEAFIEHARVTLHD-GIPAPLLPHGQESRFF 332 >gi|56551372|ref|YP_162211.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ZM4] gi|56542946|gb|AAV89100.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ZM4] Length = 323 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 164/320 (51%), Gaps = 44/320 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE AL + + Sbjct: 7 DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65 Query: 66 EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ + GI Sbjct: 66 SLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDPRTNGQGISKMVAAGI 125 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++E + + + +RQ++ R ++TLK+A S D I + S ITG ++ Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL R +S+ I+VG T+ D P L RL GL + SP + +L H ++ S I L Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I+ D V L+EGGA A +F+ Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265 Query: 304 NSRLVDSIILYRSQIVIGEG 323 LVD I+LYR+ I+IG+G Sbjct: 266 KGDLVDRILLYRAPILIGKG 285 >gi|299147398|ref|ZP_07040463.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23] gi|298514676|gb|EFI38560.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23] Length = 351 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 108/311 (34%), Positives = 166/311 (53%), Gaps = 17/311 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E Sbjct: 9 EEKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDE 68 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 69 SLLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVTGRGIQKLRDAGR 128 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181 V ++E E + + ++T R +ITLK A S D I + +P ++ ++ Sbjct: 129 EVTVGILEKECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSM 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I + Sbjct: 189 LVHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGNV 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P ++ TE P + NI I D L++++ +L R + SLLVEGG+ + Sbjct: 247 --PTLVFTEKKQPA------RTNITYISIDFNHNTLEQIMEVLYQRKIQSLLVEGGSQLL 298 Query: 300 HSFINSRLVDS 310 SFI+ L D Sbjct: 299 QSFIDDELWDE 309 >gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279] gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279] Length = 384 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/346 (32%), Positives = 179/346 (51%), Gaps = 36/346 (10%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R++ AL+ + G T NP V ++VK+G ++G G G PHAEV AL +AG Sbjct: 9 ALDERYLRRALQLAERGRGHTHPNPLVGAVLVKNGRIVGEGYHPRAGEPHAEVFALHQAG 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YV+LEPC H+GR+PPC+ ++E G+ RVVV DP+ + G GL+ L G+ Sbjct: 69 EEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPKAQG-GLERLRSAGV 127 Query: 125 IVD-RMMESEGK----IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 V+ ++E+E + +F HA R R + K A+S D + + ++ +S Sbjct: 128 AVELGLLEAEARAQNEVFFHALRRR----RPFVLWKAALSLDGQVATRSGHAAWVSNALS 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR------LNGLQEHSPMRIILDPHFKLSLD 233 + R A++VG+GTVLADDP+LT R L E P+R DP K+ LD Sbjct: 184 RRVAQGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHLLEPPPLR---DP-LKVVLD 239 Query: 234 SKIIKTA---LLAP--------VIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKK 277 ++ L AP V ++ P + +++ + R+ L+ Sbjct: 240 TEARTPPGARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGATVVELPREGGRVSLEA 299 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L L +GV +L+EGG +A + + VD + L+ + ++GEG Sbjct: 300 ALAWLWEQGVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVGEG 345 >gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae] Length = 360 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 116/331 (35%), Positives = 177/331 (53%), Gaps = 34/331 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A+++A G E Sbjct: 1 MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD-DPDVRVSGRGLQWLSQKGIIV 126 RGATAYVTLEPCSHYGR+PPCA+ ++E GI C D P+ VSGRG L + GI V Sbjct: 61 RGATAYVTLEPCSHYGRTPPCAKGLVEAGI--APWCGDGGPEPAVSGRGYAMLREAGIEV 118 Query: 127 -DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + +++R R + +K+A S D + S ITG ++ H Sbjct: 119 RGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHA 178 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ +IL GIGTV DDP+L R G+ P R+++D L +++++ A P Sbjct: 179 WRARACSILTGIGTVRRDDPQLNVR--GIDTPRQPRRVLIDARLDLPHEARLM--AGPPP 234 Query: 245 VIIVTEND--------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++ E D V++LA + ++ DL +L L GRG L Sbjct: 235 LVFCGELDASARARADALRRRGAEVVSLASARGSV--------DLAAVLAELGGRGDNEL 286 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 VE G ++ + + + LVD +++Y + ++G Sbjct: 287 HVEAGRTLSGALLRAGLVDELLVYVAPSLLG 317 >gi|241761018|ref|ZP_04759107.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374637|gb|EER64098.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 323 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/320 (35%), Positives = 165/320 (51%), Gaps = 44/320 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE AL + + Sbjct: 7 DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65 Query: 66 EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ + GI Sbjct: 66 SLKGATVYVTLEPCAHKSNRGPTCSDSLVAALPERVVIACRDPDPRTNGQGISKMVAAGI 125 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++E + + + +RQ++ R ++TLK+A S D I + S ITG ++ Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL R +S+ I+VG T+ D P L RL GL + SP + +L H ++ S I L Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I+ D V L+EGGA A +F+ Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265 Query: 304 NSRLVDSIILYRSQIVIGEG 323 + LVD I+LYR+ I+IG+G Sbjct: 266 KADLVDRILLYRAPILIGKG 285 >gi|114562213|ref|YP_749726.1| riboflavin biosynthesis protein RibD [Shewanella frigidimarina NCIMB 400] gi|114333506|gb|ABI70888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella frigidimarina NCIMB 400] Length = 381 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 118/339 (34%), Positives = 179/339 (52%), Gaps = 20/339 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE-- 61 S+FD + MS A+ + T NP V C+IV +IG G G HAEV AL+ Sbjct: 5 STFDTQMMSRAIALAEKGRYTTRPNPCVGCVIVYQNKIIGEGYHQRAGQGHAEVNALKMV 64 Query: 62 -EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G A GATAYVTLEPCSHYGR+PPCA +I + RVVV V D + VSGRG+ L Sbjct: 65 HDNGLSAEGATAYVTLEPCSHYGRTPPCALGLINAKVARVVVAVTDANPEVSGRGITLLR 124 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ VD + E L+ ++ R IT+KIA S D ++ S ITG + Sbjct: 125 EAGVEVDVGLLCEQAYDLNLGFMKRMKTGLPWITVKIAASLDGKTALSNGVSKWITGSAA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229 + V RA A++ G+ T+L DDP L R L E P+R++LD + Sbjct: 185 RADVQKYRASHCALITGVETILVDDPSLNVRYETLGELTTRHTKDEFFQPLRVVLDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTIL--VGR 285 L+ ++ ++ +P+++V+ P A ++++ + CD LL +L +G+ Sbjct: 245 LTATQQLF--SIQSPILLVSGCHYPESVKAEFPEHVSFLQLTCDSSGRIPLLALLTYLGQ 302 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 S+L+E GA +A +F+ LVD ++LY++ ++G G Sbjct: 303 HANSVLIEAGATLAGAFVAQGLVDEVVLYQAPKILGSHG 341 >gi|326335510|ref|ZP_08201697.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692276|gb|EGD34228.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 360 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 169/335 (50%), Gaps = 17/335 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M L +R +G T NP V +IV G +IG G G PHAEV A+ ++ Sbjct: 6 DEKYMQRCLFLARKAMGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAITSVRDK 65 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV LEPC H+G++PPCA IIE GI R+V+ D +V+G+G+Q L Q G Sbjct: 66 SLLKESTLYVNLEPCVHFGKTPPCADLIIEKGIPRIVIGCTDIYSKVAGKGIQRLQQAGR 125 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFIS 179 +++D ++E E + + T +KR +I LK A ++D I V IT S Sbjct: 126 EVVLD-VLEQESQALNIRFFTFHSQKRPYIILKWAQTRDGFIAPQQRKNKAPVWITNDFS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + HL RAQ AILVG TV+ D+P LT R ++P+RI++D L DS + Sbjct: 185 QQLTHLWRAQEGAILVGKSTVVQDNPSLTTRY--WVGNTPLRIVIDASHSLP-DSLAVFQ 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + V E D ++F N + K++ L + V SL+VEGG V Sbjct: 242 KMPTVVFTSKEMTD-TFNVSFVPFNPSFSMP-----KQVCNYLYEKNVQSLIVEGGTQVL 295 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 FIN RL D ++ EG L++G L Sbjct: 296 QQFINERLWDEARIFIGNKRFSEGVKAPLLQDGNL 330 >gi|289550476|ref|YP_003471380.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus lugdunensis HKU09-01] gi|289180008|gb|ADC87253.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/319 (34%), Positives = 167/319 (52%), Gaps = 17/319 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 ++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G Sbjct: 25 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 84 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + + L+Q GI V + Sbjct: 85 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 142 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + EK IT+K++ S D S IT K V+ LR Sbjct: 143 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 202 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL----DPHFKLSLDSKIIKTALLAPV 245 DA+L G TVLAD+P+ T R+ + P+R+IL D F L + L+ + Sbjct: 203 HDAVLTGNKTVLADNPQYTTRVKDGKH--PIRVILSRSGDVDFSLDMFHD-----QLSDI 255 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I TE D L IN + +C+ + +L L +GV LLVE G V F+ Sbjct: 256 WIYTE--DATLTTTLPNVFINYM-SNCK-IPDILQDLYKKGVGRLLVEAGPKVTSLFLQQ 311 Query: 306 RLVDSIILYRSQIVIGEGG 324 +LV+ +I+Y + +IG G Sbjct: 312 QLVNQLIIYFAPKLIGGSG 330 >gi|312134474|ref|YP_004001812.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor owensensis OL] gi|311774525|gb|ADQ04012.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor owensensis OL] Length = 371 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 166/313 (53%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKKASYLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPCSH+G+ PPC + II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 67 YSLKNATMYVSLEPCSHFGKQPPCTEAIIKSGIKKVVVATRDPNPIVNGKGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ +++ E +I + +I +K+A S D I V Sbjct: 127 EVVEGVLQKEAEIVNKEFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D ++ I IIY +L + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIDLLSQRGIKIIYAKSSEDGHLELSDAFSKLAQQKIISVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 MLNFSLLKKRIAD 318 >gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 363 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 175/322 (54%), Gaps = 9/322 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + ++M AL ++ G + NP V LIVKD +IG G G HAEV A+ A + Sbjct: 1 MNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGAGYHEKYGESHAEVNAINNATK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSG+ ++ L I Sbjct: 61 SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIE 120 Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +E E K +++ + LK A+S D I + S IT S+ H Sbjct: 121 VIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LLR + AI+VGI T++ DDPELTCR+ NG +P+R+I+D + ++ L+SK++ + Sbjct: 181 LLRNKLSAIMVGINTIIEDDPELTCRIKNG---KNPIRVIVDSNLRIPLNSKVLNNSDKL 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T+ D + K + +I + + DLK+L+ L + S+L+EGG + Sbjct: 238 TIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLN 297 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +VD + Y + ++G Sbjct: 298 FSALEENIVDKVRFYIAPKILG 319 >gi|253735372|ref|ZP_04869537.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|269203407|ref|YP_003282676.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ED98] gi|253726661|gb|EES95390.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|262075697|gb|ACY11670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ED98] Length = 343 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 157/314 (50%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis 053442] gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis 053442] Length = 305 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 100/264 (37%), Positives = 149/264 (56%), Gaps = 9/264 (3%) Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI Sbjct: 2 AQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKT 61 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E + + +L+R +R + LK AVS D ++ S ITG ++ V + Sbjct: 62 ECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQV 121 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA+S A+L GIGTVLAD+P L R L++ P RI+LD +L LDS ++ Sbjct: 122 LRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIVLDSRLRLPLDSHLLTDGQSPT 179 Query: 245 VIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 I E D+ L +I I+ D + DL L+ +L G ++VE G+ + Sbjct: 180 YIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELT 239 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 +F+ L D I+LYRS ++G G Sbjct: 240 SAFLAEDLADEIVLYRSPKILGGG 263 >gi|325283811|ref|YP_004256352.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus MRP] gi|324315620|gb|ADY26735.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus MRP] Length = 376 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 177/327 (54%), Gaps = 19/327 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQALEE 62 D FM+ AL + +G TS NP V C++V+ G V+GRG G PHAEV AL E Sbjct: 8 DEDFMAQALAEAARGLGRTSPNPPVGCVLVQPNGSGGEVVGRGFHPRAGEPHAEVFALRE 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV DP+ +V+GRGL+ L Sbjct: 68 AGERARGATAYVTLEPCSHFGRTPPCADALMAAGVARVVVAAGDPNPQVNGRGLERLRAA 127 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSV---PITG 176 GI V ++E++ + R + R + K A++ D + G GS +TG Sbjct: 128 GIAVQTGVLEAQAVRQQAGFRARMLLGRPFVIYKYAMTLDGKVAALEEGGGSEANGAVTG 187 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ +V R ++DAI VG+ T+L DDP+LT R + P +I D + ++ Sbjct: 188 PEARARVMGWRNEADAIAVGVDTLLTDDPQLTTR-GVVGGRDPRPVIFDRQGRTPPTARA 246 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 ++ + V+ + P LA + + L++ L L GV++LL+EGG Sbjct: 247 LRPGAV--VVTAPGAEAPALA------DAGAVLLPAATLEEALRGLHDLGVSTLLLEGGP 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F S L+D + + + ++G G Sbjct: 299 TLASAFAESDLIDEVRAFIAPKLLGAG 325 >gi|315657966|ref|ZP_07910840.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis M23590] gi|315497002|gb|EFU85323.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis M23590] Length = 383 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 165/319 (51%), Gaps = 17/319 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 ++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G Sbjct: 40 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 99 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + + L+Q GI V + Sbjct: 100 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 157 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + EK IT+K++ S D S IT K V+ LR Sbjct: 158 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 217 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL----DPHFKLSLDSKIIKTALLAPV 245 DA+L G TVLAD+P+ T R+ + P+R+IL D F L + L+ + Sbjct: 218 HDAVLTGNKTVLADNPQYTTRVKDGKH--PIRVILSRSGDVDFSLDMFHD-----QLSDI 270 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I TE+ L N+ I Y + +L L +GV LLVE G V F+ Sbjct: 271 WIYTEDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQ 326 Query: 306 RLVDSIILYRSQIVIGEGG 324 +LV+ +I+Y + +IG G Sbjct: 327 QLVNQLIIYFAPKLIGGSG 345 >gi|262395034|ref|YP_003286888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. Ex25] gi|262338628|gb|ACY52423.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. Ex25] Length = 375 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 116/336 (34%), Positives = 171/336 (50%), Gaps = 28/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D MS A++ +R + T+ NP+V C+IV+D ++G G G PHAEV A+ A Sbjct: 11 SDLDFAMMSRAIKLARRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L G Sbjct: 71 GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + ++ + LK+A S D ++ S IT +++ Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPVARQD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RA S IL TV+ D+ L R + L + P+R+ILD L+ Sbjct: 191 VQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHLT 250 Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288 K+ T +IV+ + D P+L A D DL L I + Sbjct: 251 DALKLFHTD--GERVIVSPDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A + I + LVD +I+Y + ++G G Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333 >gi|57640359|ref|YP_182837.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis KOD1] gi|57158683|dbj|BAD84613.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis KOD1] Length = 353 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 183/331 (55%), Gaps = 28/331 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +FM AL ++ G T+ NP V +IVKDG +IG G G HAE+ A+E+A Sbjct: 5 DEKFMRLALELAKRGEGWTNPNPMVGAVIVKDGKIIGVGWHRKFGEKHAEINAIEDAKAK 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV ++DP+ V+G+G++ + + G Sbjct: 65 GYDVRGATMYVTLEPCSHWGKQPPCADRIIQEGFKRVVVAMEDPNPLVAGQGIEKMRKAG 124 Query: 124 IIVDRMMESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I V+ + E +IFL Y+T ++ +++K+A++ D I S ITG Sbjct: 125 IEVEVGLLEEEARKLNEIFLK-YITTKL---PFVSIKLALTLDGFIATETGSSKWITGEK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + + + Sbjct: 181 ARQRVQELRRKHMAIMVGSGTVLADNPRLNCRLENCPEK--VKVILDRSGRVADEMRKGR 238 Query: 239 TALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 L VI TE + +A I + LKKL + G+ S+LVEGG Sbjct: 239 KFRLFEDGRVIFFTEKPEKFKGIA----EAYPITEPAKILKKLGEL----GIDSVLVEGG 290 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +A F++ L D + L+ + G G P Sbjct: 291 -RIACQFLS--LADKLYLFYGPKLFGRGIKP 318 >gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylibium petroleiphilum PM1] gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylibium petroleiphilum PM1] Length = 377 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 192/364 (52%), Gaps = 33/364 (9%) Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARG 69 ALR + +GL+ NP V C+I DG ++ G T G HAEV AL + AG RG Sbjct: 12 ALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSALRAAQAAGHTVRG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA+VTLEPCSH+GR+PPC ++E G+ V+V + DP+ V+G G+ L GI V + Sbjct: 72 GTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGIGRLRAAGIDVTVL 131 Query: 130 MESE-----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + +L+R + +R + LKIA S D + S ITG ++ H Sbjct: 132 APGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLSQWITGDAARTDGH 191 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTA-- 240 R ++ A+L GIGTV+ DDP L RL LQ P R+++D ++LD++I+ Sbjct: 192 AYRKRAGAVLTGIGTVIDDDPRLDVRLVDTVLQ---PCRVVVDSKLDIALDARILSPPGE 248 Query: 241 -LLAPVIIVTENDDP-VLALAFRKKNINIIYC---DCR-DLKKLLTILVGRGVTSLLVEG 294 L+ + + P V LA ++ ++++ C D + DL +L L R + L VE Sbjct: 249 RLVYTASALARHAAPKVRELA--EQGVSVLACANADGKVDLGAMLDDLARREINELHVEA 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPLEEGYLEKNFMCVRRDYFGS 348 G+ ++ SF+ + LVD ++Y + +++G G G + L EG L F+ V R G+ Sbjct: 307 GSKLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEG-LALEFVSVER--VGA 363 Query: 349 DVCL 352 D+ L Sbjct: 364 DLRL 367 >gi|332157888|ref|YP_004423167.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2] gi|331033351|gb|AEC51163.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2] Length = 349 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 116/328 (35%), Positives = 172/328 (52%), Gaps = 21/328 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D ++M AL +R G + NP V +IVK+G VIG+G Y G HAEV A+E+A Sbjct: 4 DEKYMKLALELARLGEGRVNPNPMVGAVIVKNGKVIGKGHHEYFGGKHAEVNAIEDAKRN 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G RGAT YVTLEPC+H+G+ PPC II+ GI RVVV DP+ V+G G++ L + G Sbjct: 64 GYSVRGATMYVTLEPCAHWGKQPPCVDRIIKEGISRVVVATLDPNPMVNGEGVKRLMEAG 123 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ +++ E + Y + +K+A++ D I S IT ++ + Sbjct: 124 IEVEVGILKEEAEKLNEIYFKYIKTSMPFVAIKLALTLDGFIATKSFSSKWITNEKARLK 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V +R + AI+VG TV D+P L CR+NG ++ +++ILD H + + K + Sbjct: 184 VQEIRRRFMAIMVGANTVTIDNPRLNCRVNGCRDK--VKVILDRH-GTTANRKDLNVFKE 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 VI+ TE+D K N K++L IL G+ S+L+EGG +A F Sbjct: 241 GKVIVFTESD---------KSWDNAKVIKETSPKRILEILGKMGIDSVLIEGG-RIACQF 290 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE 330 + D + L+ +IG G SP E Sbjct: 291 LP--FADKLYLFYGNKLIGNG--ISPFE 314 >gi|85710330|ref|ZP_01041395.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1] gi|85689040|gb|EAQ29044.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1] Length = 315 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 117/298 (39%), Positives = 148/298 (49%), Gaps = 41/298 (13%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-ARGATAYVTLEPCSHYG-RS 85 NP VA L+V+ VI RG T GG PHAE AL E A+GAT YVTLEPC+H R Sbjct: 18 NPGVAALLVQGNCVIARGWTQGGGRPHAEAIALAGIAEGGAKGATLYVTLEPCAHQSQRG 77 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 P C +I RVV+ DPD R +G G + + + GI V + + + L YLTR Sbjct: 78 PACTDLVIAARPSRVVIGQLDPDPRTAGLGAKRIQRAGIAVTVLDDDVARASLAGYLTRA 137 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 R H+TLK+A+S D I +A S ITG ++ VH RAQ DAILVG GT AD P Sbjct: 138 ALGRPHVTLKLAMSLDGAIALASGASQWITGEAARAHVHSRRAQHDAILVGGGTWRADKP 197 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 L RL GL+ SP R++L T +AP + N+ Sbjct: 198 RLDVRLPGLEARSPDRVLL--------------TRGVAPDGVTVINE-----------PA 232 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I D GV L VEGGA A SF+ +VD + +YR+ I+IG G Sbjct: 233 QIAALD--------------GVQYLYVEGGAGAAASFLAEDMVDELHIYRAPILIGSG 276 >gi|291518541|emb|CBK73762.1| riboflavin biosynthesis protein RibD [Butyrivibrio fibrisolvens 16/4] Length = 257 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 98/251 (39%), Positives = 140/251 (55%), Gaps = 5/251 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EA 63 D +M AL ++ G + NP V +IVKDG++IG G G HAE AL+ E Sbjct: 3 DKTYMLRALELAKLGAGFVNPNPMVGAVIVKDGVIIGEGYHEKYGQLHAERNALKDCRER 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GAT YVTLEPC HYG++PPC + I+E I RVV+ D + V+G+G L + G Sbjct: 63 GNDPAGATMYVTLEPCCHYGKTPPCTEAIVESRINRVVIGTLDVNPVVAGKGADILREHG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ ++E E K + + KR ++ +K A++ D I S IT ++ Sbjct: 123 IRVEVGLLEKECKKLNRVFNKYMLSKRPYVVMKYAMTADGKIATVTGESKWITSDEAREN 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR I+VG+ TV+ D+P L CRL+ +P+RII D H + LDSK+++TA Sbjct: 183 VHRLRKNLSGIMVGVTTVITDNPSLDCRLDE-PAVNPVRIICDSHLRTPLDSKVVETAGG 241 Query: 243 APVIIVTENDD 253 II T +DD Sbjct: 242 IKTIIATSSDD 252 >gi|254173530|ref|ZP_04880202.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4] gi|214032222|gb|EEB73052.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4] Length = 360 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 177/331 (53%), Gaps = 20/331 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E+ Sbjct: 1 MSSEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRRFGEKHAEVNAIED 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV + DP+ VSGRG++ + Sbjct: 61 AKSRGHDVRGATMYVTLEPCSHWGKQPPCADRIIKEGFKRVVVAMVDPNPLVSGRGIEKM 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V+ ++E E + ++ K +++K+A++ D I S ITG Sbjct: 121 RKAGIEVEVGVLEDEARRLNEIFIKYVTTKMPFVSIKLALTLDGFIATETGSSQWITGEK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + + Sbjct: 181 ARLKVQELRRRHMAIMVGAGTVLADNPRLNCRLENCPEK--VKVILDRSGRVAEAIRSGR 238 Query: 239 TALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 L VI TE + +A I L+KL + G+ S+L+EGG Sbjct: 239 KFRLFEDGRVIFFTERPELFEGIA----EAYPITGPEEILRKLGEL----GIDSVLIEGG 290 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +A F++ D L+ + G G P Sbjct: 291 -RIACQFLS--YADKFYLFYGPKLFGRGIKP 318 >gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [marine gamma proteobacterium HTCC2207] gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium HTCC2207] Length = 373 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 113/337 (33%), Positives = 173/337 (51%), Gaps = 12/337 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D +MS AL + TS NPSV C++V DG ++G G T G HAEV+AL Sbjct: 1 MAYSVDDREYMSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A ATAYVTLEPCSH G++ PC + +I+ GI RVV+ +DP+ +V+G G++ L Sbjct: 61 NAAASAKG-ATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQ 119 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V + E + + ++ R + + +K+A S D MA S IT S Sbjct: 120 DAGIEVACGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPAS 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----GLQE--HSPMRIILDPHFKLSLD 233 + V LRA + AI+ GIGT L DDP LT R+ G+ + P+R+++D ++S + Sbjct: 180 RKDVQRLRAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPE 239 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289 +++ + + + AL +++ R DL +LL L R S Sbjct: 240 ARMFAQPGDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNS 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 ++VE GA +A F+ L+D ++ Y + + G P Sbjct: 300 VMVEAGAGLAGGFVAEGLLDELVCYWAPKLFGSDARP 336 >gi|87161517|ref|YP_494408.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195585|ref|YP_500391.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87127491|gb|ABD22005.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203143|gb|ABD30953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 334 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 105/302 (34%), Positives = 153/302 (50%), Gaps = 9/302 (2%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T NP V ++VK+G ++G G G HAEVQAL+ A + A GAT Y+TLEPCSH+ Sbjct: 4 GQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSHF 63 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 G +PPC II+C I +VV D + G + L GI V+ + + + Sbjct: 64 GSTPPCVNKIIDCKIAKVVYATKDNSLDTHGD--ETLRAHGIEVECVDDERASQLYQDFF 121 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + ++ IT+K++ S D S IT K V+ LR + DA+L G TV Sbjct: 122 KAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVEL 181 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 DDP+ T R+ + +P+++IL + + +I + P+ I TEN + L + Sbjct: 182 DDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWIYTENPN----LTTNQ 234 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +I IIY DL +L L RGV +LLVE G F+ S +D ILY + +IG Sbjct: 235 THIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIGG 294 Query: 323 GG 324 G Sbjct: 295 SG 296 >gi|94984408|ref|YP_603772.1| riboflavin biosynthesis protein RibD [Deinococcus geothermalis DSM 11300] gi|94554689|gb|ABF44603.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Deinococcus geothermalis DSM 11300] Length = 383 Score = 169 bits (427), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 117/325 (36%), Positives = 177/325 (54%), Gaps = 12/325 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P + DA M AL + + +G T+ NP V C+IV+ G V+GRG G PHAEV AL Sbjct: 20 VPGEAADAALMDQALAQAAYGLGRTAPNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFAL 79 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVVV DP+ +V+GRG++ L Sbjct: 80 REAGERARGATAYVTLEPCSHFGRTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLR 139 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E + A V + R + K A++ D + G G+ +T + Sbjct: 140 AAGLHVTVGVGEEAALRQQAGFRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPA 199 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + +V R + DA+ VG GT+LADDP LT R + G ++ P ++ D + + ++ ++ Sbjct: 200 RARVMRWRNELDAVAVGSGTLLADDPALTTRGVPGGRDPRP--VLFDRRARTPVAARALR 257 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + V+ E + L A I+ D L + L L ++SLL+EGG + Sbjct: 258 PGTI--VVTAPETNTDHLEAA----GAVILRADS--LPEALHGLGELNISSLLLEGGPRL 309 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 A +F L+D + + ++G G Sbjct: 310 ASAFFADGLIDEVRALIAPRLLGAG 334 >gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58] gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58] Length = 372 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 109/325 (33%), Positives = 166/325 (51%), Gaps = 10/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ T NP V C++VK+G ++ G Y G PHAE A+ +A G Sbjct: 11 FMRRAIEIGERGRITTPPNPWVGCVLVKNGKILSEGYHEYPGGPHAEEIAIRKAHVSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 A Y++LEPCSHYG+ PPC +I+ + V + + DPD RVSG+G++ L GI V Sbjct: 71 AQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNVGIRVHVG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E+ + L YL ++ + LK A S D + S IT +++ V +RA Sbjct: 131 LEEARARKSLQPYLYQRSSCSPWVVLKSAASIDGQVADRNSQSQWITCPEARHDVGFIRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 S A++VG GTV+AD+P+LT R L P+RI+LD ++ +S++ L V+ Sbjct: 191 CSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIVLDSSGRVPKESQVFH--LGGEVL 248 Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VT P L + + I C DL +++ +L + +LVEGGA V Sbjct: 249 YVTTKRCPSQHLQYLEALGVEIACVKASSSGVDLHEVMRLLANKHFLQVLVEGGATVHTE 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 F+ L ++IILY ++G+ P Sbjct: 309 FLKHHLANAIILYYGPKILGDQKKP 333 >gi|320335323|ref|YP_004172034.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM 21211] gi|319756612|gb|ADV68369.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM 21211] Length = 353 Score = 169 bits (427), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 183/348 (52%), Gaps = 16/348 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL+ + +G T+ NP V C+IV G V+GRG G HAEV AL++AG ARG Sbjct: 3 FMHQALQQAALGLGRTAPNPPVGCVIVAGGEVVGRGFHPRAGQGHAEVFALQDAGVRARG 62 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 ATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ V+GRG+ L G+ V Sbjct: 63 ATAYVTLEPCSHTGRTPPCADALIRAGVARVVVAALDPNPVVAGRGVARLRTHGLDVHVG 122 Query: 130 MESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ + A + + R + K A + D I +P++G ++ VH R Sbjct: 123 PLADAAVRQQAGFRSLITRGRPWVVYKYAATLDGKISADDARPLPVSGPDARALVHTWRN 182 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI VG+GTVLADDP LT R + G ++ P I+ D H + ++ ++ ++ Sbjct: 183 EFDAIAVGVGTVLADDPHLTTRGVPGGRD--PRPIVFDRHARTPTTARALRPG----TVL 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 VT D A +++ L + L L GVTSLL+EGGA +A + + L Sbjct: 237 VTGPD--ARTDAHEAAGAHVLRAPT--LHEALQGLGALGVTSLLLEGGARLASALYAADL 292 Query: 308 VDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +D + + + ++G G + SP + + V+ G+DV +E Sbjct: 293 IDEVRAFIAPTLLGAGLPALTSP--AAHAPRALHDVQATRVGTDVLIE 338 >gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] Length = 376 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 175/329 (53%), Gaps = 6/329 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D ++M+ ALR ++ + T NP V C+IV++G ++G G G PHAE+ AL A Sbjct: 11 TAADRQYMAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAAA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ ARGA YVTLEPC H+GR+PPC ++ GI RV+ DP+ RV+G+GL+ L+ G Sbjct: 71 GQAARGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAAG 130 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +M + + + R ++ K+A+S D MA S IT ++ Sbjct: 131 ITTRHGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARGD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA+SD +L G GTVLADDP+LT R P R++LD ++ +++++ Sbjct: 191 VHRLRARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQEP 250 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 V+ + L + I D +L++ LT + + LLVE G Sbjct: 251 GKVAVLYAHHDRRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGPT 310 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 ++ + + + L+D +++Y + ++G+ P Sbjct: 311 LSGALLQADLIDELVVYIAPHLMGDEARP 339 >gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia rhizoxinica HKI 454] gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [Burkholderia rhizoxinica HKI 454] Length = 382 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 118/336 (35%), Positives = 172/336 (51%), Gaps = 29/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M AL + + TS NP V C++VKDG VIG G T G HAE+ AL++A Sbjct: 3 SDFDRLQMQRALVLAERGLYTTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G GATAYVTLEPCSH+GR+PPCA +IE GI RV+ ++DP+ +VSGRGL L Sbjct: 63 RLRGHTPAGATAYVTLEPCSHFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V ++ E + +++R + LKIA + D + S IT + Sbjct: 123 DAGVDVRCGLLAHEAQELNVGFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ A L GIGTV DDP++T R P+R+++D + LD++I+ Sbjct: 183 RTDGHAWRARACATLTGIGTVREDDPQMTVRAVSTPRQ-PLRVLVDSCLDVPLDARILTG 241 Query: 240 ALLAPVII--------------VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 A P++I + V+AL + + DL L +L R Sbjct: 242 A--PPLVICARDDAAFAARAHALRAAGAEVIALPNQSGKV--------DLPAALRLLAAR 291 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 G+ L VE G + S + VD ++LY + ++G Sbjct: 292 GINELHVEAGYKLNGSLLREGCVDELLLYIAPALLG 327 >gi|326561735|gb|EGE12070.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 7169] gi|326569043|gb|EGE19112.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC1] Length = 350 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 186/366 (50%), Gaps = 47/366 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAQ 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I + D+ + FL A T ++ LK A S D A S ITG Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232 ++ V LRA+S AI+ G GT++AD+P LT R G+ H P +I+D +LS L Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMIPKPKVVIVDRRNRLSDL 245 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 D V +D+ L +R DL LL LV + +L Sbjct: 246 DD-----------YQVLNHDN---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348 +E G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+ Sbjct: 281 IEAGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGN 340 Query: 349 DVCLEY 354 D+ L Y Sbjct: 341 DIRLIY 346 >gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13] gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13] Length = 369 Score = 168 bits (426), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 127/334 (38%), Positives = 178/334 (53%), Gaps = 22/334 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI V Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDV 123 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M S+ + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L P+RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQH 243 Query: 235 KIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++++ T LA + +N V L F + DL ++ L R V S+ Sbjct: 244 RVVQQPGTTWLARLQPDDQNWPQEVEQLTFPAHGGGV------DLVVMMMQLAKRQVNSI 297 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 VE GAA++ + + + LVD +ILY + ++G+ G Sbjct: 298 WVEAGAALSGALLQAGLVDELILYIAPKLMGDNG 331 >gi|291545679|emb|CBL18787.1| riboflavin biosynthesis protein RibD [Ruminococcus sp. SR1/5] Length = 253 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 11/239 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTEP 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTETIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 V+ M E +F H Y+T K ++ +K A++ D I S ITG ++ Sbjct: 123 VEDFMREECDQLNPVFFH-YIT---TKTPYVVMKYAMTLDGKIATKTGASKWITGEAARK 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V +R Q I+ GIGTVLADDP L R+ G + SP+RI+ D ++ DS+I+K+A Sbjct: 179 EVQHMRHQYMGIMAGIGTVLADDPMLNVRVEGWK--SPVRIVCDSKLRIPPDSQIVKSA 235 >gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Planctomyces brasiliensis DSM 5305] gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Planctomyces brasiliensis DSM 5305] Length = 377 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 170/320 (53%), Gaps = 11/320 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL +R G NP V ++V + + +I G G PHAEVQAL AG+ ARG Sbjct: 12 MQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRARG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 A +VTLEPC+H+G++PPC++ +I+ GI RV + DP +G + L + G+ V+ Sbjct: 72 AWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVEVG 131 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + E + L + + ++ K A++ D I S I+G S+ VH LR Sbjct: 132 LCQQEAERLLRPFTKLMTTGQPYVHAKWAMTLDGKIATRTGSSQWISGPESRAVVHKLRG 191 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVII 247 + DAIL G GTVLAD+P+LT R G +P+R+++D +L L S++++T + PV++ Sbjct: 192 RCDAILTGRGTVLADNPQLTARPPG--PRTPLRVVVDSQAQLPLTSQLVQTCSSDQPVLL 249 Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 T D ++ + + L LLT L R VT+L +E G + S Sbjct: 250 ACTARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALLTELGKRKVTNLFLECGGELLGS 309 Query: 302 FINSRLVDSIILYRSQIVIG 321 F++ RL+D + ++ ++G Sbjct: 310 FLDQRLIDEVHVFLGPKLVG 329 >gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str. Alaska E43] gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str. Alaska E43] Length = 366 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 174/322 (54%), Gaps = 9/322 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + ++M AL ++ G + NP V LIVKD +IG G G HAEV A+ A + Sbjct: 4 LNEKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGSGYHEKYGEAHAEVNAINNATK 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSGR ++ L I Sbjct: 64 SLDGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLKDNDIE 123 Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +E E K +++ + LK A+S D I + S IT S+ H Sbjct: 124 VIVGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LLR + AI+VGI T++ D+PELTCR+ NG +P+R+I+D + ++ L SK++ + Sbjct: 184 LLRNKLSAIMVGINTIIEDNPELTCRIENG---KNPIRVIVDSNLRIPLKSKVVNNSDKL 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T+ D + K + +I + + DLK+L+ L + S+L+EGG + Sbjct: 241 TIVATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLN 300 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 S + +VD + Y + ++G Sbjct: 301 FSALEENIVDKVRFYIAPKILG 322 >gi|332878860|ref|ZP_08446575.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683211|gb|EGJ56093.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 350 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/323 (33%), Positives = 167/323 (51%), Gaps = 10/323 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ ++ +G T NP V +IV + VIG G G HAEV+A+ ++ Sbjct: 3 DQQYIHRCIQLAQNGLGTTYPNPVVGSVIVYNDRVIGEGWHVRAGEAHAEVRAIASVKDK 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +T YV+LEPCSHYG++PPCA II I RVV+ DP +V+GRG+Q L + G Sbjct: 63 QLLSESTLYVSLEPCSHYGKTPPCADLIIAHRIPRVVIGCTDPFAKVAGRGIQKLREAGC 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISK 180 +V + + E + + T +KR +I LK A ++D +I + ITG ++ Sbjct: 123 EVVVGVCQEECEALNKRFFTFHQKKRPYIFLKWAETRDGLIAPLHKQEIAPQWITGAYAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VHLLR+ AILVG GTV AD+P L+ R SP+R+I+DP D + Sbjct: 183 QYVHLLRSTEAAILVGAGTVWADNPSLSTR--SWYGKSPLRVIIDPRLSTRKDFNVWNDE 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + P + + + D + ++ + I L +L +L R V SL+VEGGA Sbjct: 241 V--PTLFIADRDYKGVRHFGQRTEVACIDFGGEVLPQLCKVLYEREVQSLIVEGGAHTLQ 298 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 FI + L D +++R V G Sbjct: 299 QFIKADLWDEALVFRGDTVFTNG 321 >gi|326562323|gb|EGE12649.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 103P14B1] gi|326575527|gb|EGE25452.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 101P30B1] Length = 350 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 47/366 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 10 DIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKAR 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L G Sbjct: 70 GFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNAG 129 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 I + D+ + FL A T ++ LK A S D A S ITG Sbjct: 130 IEVLVGVCDQQAAALNLGFLKAMRT----GLPYVRLKTASSLDGRTATASGESKWITGIE 185 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEH---SPMRIILDPHFKLS-L 232 ++ V LRA+S AI+ G GT++AD+P LT R G+ H P +I+D +LS L Sbjct: 186 AREDVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDL 245 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLL 291 D V DD L +R DL LL LV + +L Sbjct: 246 DD-----------YQVLNRDD---TLIWRN-----------DLMSLLKTLVSQYACYDVL 280 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGS 348 +E G+ ++ +FI LVD +I+Y++ ++G+ P L+ + F D G+ Sbjct: 281 IEAGSELSGTFITEGLVDELIVYQAPCILGQDARPMFACQLDHLAKQYRFGLHSADIIGN 340 Query: 349 DVCLEY 354 D+ L Y Sbjct: 341 DIRLIY 346 >gi|301335276|ref|ZP_07223520.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2tet1] Length = 375 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 109/322 (33%), Positives = 161/322 (50%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL LV RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLVERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|227537349|ref|ZP_03967398.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingobacterium spiritivorum ATCC 33300] gi|227242852|gb|EEI92867.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingobacterium spiritivorum ATCC 33300] Length = 350 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/351 (30%), Positives = 174/351 (49%), Gaps = 17/351 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + R+M L + G S NP V +IV + +IG G T+ G PHAEV A+++ Sbjct: 2 NMQERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVK 61 Query: 65 EEARGAT--------AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 ++ + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+G+GL Sbjct: 62 DQYPDSADRLLAESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGL 121 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L Q GI V+ ++E E + TR + R ++ LK A + D + I+ Sbjct: 122 GILQQAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYVILKWAETADGYMAKNTDEQAWIS 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 SK VH R++ DAILVG T L D+P LT R + ++P R+++D + + Sbjct: 182 NEASKQLVHRWRSEEDAILVGTRTALIDNPSLTVR--EWEGNNPKRVLIDKQLSVPESAA 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I V + D R K I + D + +L L + S+++EGG Sbjct: 240 IFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSIIIEGG 294 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 A FI++ L D + RS+ V+ EGGI +P+ EG L++ D++ Sbjct: 295 AKTLQLFIDAGLWDEARVIRSK-VLWEGGIKAPVVEGELKEQQAVASDDFY 344 >gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str. 'Deep ecotype'] gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str. 'Deep ecotype'] Length = 379 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/337 (32%), Positives = 171/337 (50%), Gaps = 26/337 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG- 64 D +M+ A++ + TS NP V C+IV +D ++G+G G PHAEV AL +A Sbjct: 9 DYYWMAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQAAH 68 Query: 65 ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E A+GATAYVTLEPCSH+GR+PPCA+ ++E + RVV+ + DP+ V G G+ L + Sbjct: 69 ARSEGAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISMLQE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V +M +E ++ R + + + +K+ +S D I + S IT ++ Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EH--SPMRIILDPHFKLSL 232 V RAQS +L G GTV AD+P L R Q EH P R+++D LS Sbjct: 189 RDVQHYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTLSR 248 Query: 233 DSKIIKTALLAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 D + + T P A L +K+ + DL L+ L + Sbjct: 249 DFALFNDGNM--TFTATSQAHPDTASQHYLQLDEKDGKL------DLHALMLALGDKQFN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + VE G +A + + LVD +I Y++ ++G+ G+ Sbjct: 301 EVWVEAGPGLAGALLQEGLVDELICYQAPKLLGDKGV 337 >gi|319401074|gb|EFV89293.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis FRI909] Length = 347 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 108/317 (34%), Positives = 165/317 (52%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG A Sbjct: 2 SRFMDDAIQLAQMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 62 QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKTGQLDFNQQIFKDT-ASEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ +F K INI CD +L L RG+ LLVE G + F+ S+ Sbjct: 237 YTENEKLKTDKSFIKI-INISNCDT---ATILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYIAPKLIGGSG 309 >gi|329735920|gb|EGG72197.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU045] Length = 347 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG Sbjct: 2 SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 62 QGATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ +F K INI CD +L L RG+ LLVE G + F+ S+ Sbjct: 237 YTENEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYIAPKLIGGSG 309 >gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. RS9917] gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. RS9917] Length = 369 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 159/299 (53%), Gaps = 20/299 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ G ++G G A G PHAEV AL +AGE AR Sbjct: 9 WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGYHARAGKPHAEVGALVQAGEAAR 68 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H+GR+PPC + +I GIRRVVV + DPD R++G GLQ L G+ ++ Sbjct: 69 GGTLVVTLEPCCHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEVIP 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E A++ R R LK A+S D + S I+G ++ VH LR Sbjct: 129 GVLEAEAAHQNRAFVHRVKTGRPWGLLKWAMSLDGRTALPNGASQWISGAAARAWVHRLR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA----LLA 243 A DA++VG GTV ADDP LT R GL+ P+R++L L ++I TA LLA Sbjct: 189 AHCDAVIVGGGTVRADDPLLTSR--GLRTPEPLRVVLSRSLDLPAAARIWTTAEAPTLLA 246 Query: 244 --PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGG 295 P + + + L A + C LK+ LL L RG +L E G Sbjct: 247 HGPAVEAADAESSPLLEALGAAGVI-----CTALKRCEPLALLEQLASRGCNRVLWECG 300 >gi|239993720|ref|ZP_04714244.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC 27126] Length = 379 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/337 (32%), Positives = 172/337 (51%), Gaps = 26/337 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG- 64 D +M+ A++ ++ TS NP V C+IV ++ ++G+G G PHAEV AL A Sbjct: 9 DYFWMAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASN 68 Query: 65 ---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + A+GATAYVTLEPCSH+GR+PPCA ++E + RVV+ + DP+ V G G+ L + Sbjct: 69 ARPQGAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V +M +E ++ R + + +K+ +S D I + S ITG ++ Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EH--SPMRIILDPHFKLSL 232 V RAQS +L G GTV AD+P L R Q EH P R+++D KL+ Sbjct: 189 RDVQQYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKLTR 248 Query: 233 DSKIIKTALLAPVIIVTENDDPVLA----LAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 D + + T P A L +K+ + DL L++ L + Sbjct: 249 DYTLFNDGNI--TFTATSQAHPDTATQHYLQLDEKDGKL------DLHALMSALGDKQYN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + VE G +A + + LVD +I Y++ ++G+ G+ Sbjct: 301 EVWVEAGPGLAGALLQEGLVDELICYQAPKLLGDKGV 337 >gi|27468359|ref|NP_764996.1| riboflavin specific deaminase [Staphylococcus epidermidis ATCC 12228] gi|27315905|gb|AAO05040.1|AE016748_274 riboflavin specific deaminase [Staphylococcus epidermidis ATCC 12228] Length = 347 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 162/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG Sbjct: 2 SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 62 QGATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ Sbjct: 237 YTENE----KLKTNKSFIKIISISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYIAPKLIGGSG 309 >gi|57867218|ref|YP_188900.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis RP62A] gi|57637876|gb|AAW54664.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis RP62A] Length = 347 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG Sbjct: 2 SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 62 QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ +F K INI CD +L L RG+ LLVE G + F+ S+ Sbjct: 237 YTENEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYIAPKLIGGSG 309 >gi|206602767|gb|EDZ39248.1| Riboflavin biosynthesis protein RibD [Leptospirillum sp. Group II '5-way CG'] Length = 388 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/322 (40%), Positives = 177/322 (54%), Gaps = 10/322 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE ARG Sbjct: 8 FMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGERARG 67 Query: 70 ATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L GI V+ Sbjct: 68 ATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELRDGGIPVET 127 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + +L+ R +TLK A S D I A S I+G S H LR Sbjct: 128 GLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYAHQLR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + DAI+VG+GTVL D+P LT RL GL++ H P+RIILD + DS++ +T +PV Sbjct: 188 QEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRIILDSLGRTPPDSRLFETLSESPVW 247 Query: 247 IVTENDDPVLALA-FRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGGAAVA 299 I+ + P +A +K +K LL L+ + +LLVEGGA V Sbjct: 248 IMAGENAPEDRIARLEEKGARTFRLPAGPGEKGLRLSSLLAELLENRLLTLLVEGGAQVN 307 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 SF+ RLVDSI L + ++IG Sbjct: 308 GSFLQERLVDSIRLVLAPLLIG 329 >gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6] gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6] Length = 416 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 168/334 (50%), Gaps = 39/334 (11%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE---EAGEEARGATAYVTLEP 78 GLT NP V C+IV G ++G G T G PHAEV A+ AG GATAYVTLEP Sbjct: 41 GLTEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYVTLEP 100 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138 C+H+GR+PPCA +IE G++RVV + DP V+G+GL L+ GI V++ + +E + Sbjct: 101 CAHHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEAATAI 160 Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + + +R + +R + +K+A S D + S ITG ++ H R ++ A+L GI Sbjct: 161 NIGFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAVLTGI 220 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP---VIIVTENDDP 254 GTVL DDP L R + PMR+++D + + ++ LLAP V++ T D+ Sbjct: 221 GTVLDDDPRLDVR-HVPTPRQPMRVVVDAPLRTPVTAR-----LLAPPGEVLVYTSADET 274 Query: 255 V---------------LALAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTS 289 AL ++ C DL +L L RGV Sbjct: 275 AQAAWLAEVQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVNE 334 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L VE G + S + LVD ++Y + ++G G Sbjct: 335 LHVEAGHRLNGSLLREGLVDEFLVYLAPKLLGLG 368 >gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335] gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335] Length = 363 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 4/326 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M + G T+ NP V +I++DG ++G G G PHAE+ AL A + Sbjct: 11 DTDLMRRCCELAAQAAGHTAPNPLVGSIILRDGEIVGEGFHPKAGEPHAEIFALRAASDR 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC+H G +PPC++ +I+ GIRRVV+ + DP+ + G G++ L Q GI V Sbjct: 71 AQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPKAKG-GIEKLRQAGIEV 129 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E + L+ A++ R LK A++ D I S I+G S+ +VH Sbjct: 130 VVGIEVDRCHQLNEAFIHRVTHNSPFGILKYAMTLDGKIATTAGHSAWISGPSSRQRVHQ 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR++ DA++VG TV D+P LT G + +P+R+++ H L D + KT + + Sbjct: 190 LRSRCDAVIVGGNTVRQDNPNLTSHGEGTR--NPLRVVMSRHLDLPSDRNLWKTEVAPTL 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + N + A ++ + I+ + ++ L RG S+L E G +A I + Sbjct: 248 VFTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQRGAMSVLWECGGVLAAKAIAA 307 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEE 331 V I + + +IG PSP+ E Sbjct: 308 GSVQKIWAFIAPKLIGGQRAPSPIGE 333 >gi|251811149|ref|ZP_04825622.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|282875812|ref|ZP_06284679.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis SK135] gi|251805369|gb|EES58026.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|281294837|gb|EFA87364.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis SK135] gi|329730651|gb|EGG67035.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU144] gi|329737423|gb|EGG73677.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU028] Length = 347 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG Sbjct: 2 SRFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNT 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 62 QGATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + T + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I Sbjct: 180 HEHDAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ +F K INI CD +L L RG+ LLVE G + F+ S+ Sbjct: 237 YTENEKLKTDKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYIAPKLIGGSG 309 >gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rubrivivax benzoatilyticus JA2] gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rubrivivax benzoatilyticus JA2] Length = 370 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 169/334 (50%), Gaps = 14/334 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 MP++ D + AL + +GLT NP V C+I DG V+GRG T G HAEV A Sbjct: 1 MPLAPLDRTRLLEALALAEGSIGLTDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMA 60 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L +A G + RGATA+VTLEPC+H+GR+PPC ++ GI RVVV V DP +V+G G+ Sbjct: 61 LRDAAAAGHDTRGATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGI 120 Query: 117 QWLSQKGIIV---DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 L G+ V D + + + + +R R + +KIA S D + S Sbjct: 121 TRLRAAGVQVELGDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQW 180 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLS 231 ITG ++ H R ++ +L GIGTVL DDP L R LQ PMR ++D +L Sbjct: 181 ITGEAARTDGHAWRRRAGCVLTGIGTVLDDDPRLDVRRVPTVLQ---PMRAVMDSGLRLP 237 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI-IYCDCR-DLKKLLTILVGRGVTS 289 ++++ V AL ++ D R D +L L GV Sbjct: 238 AGARVLAPPGRCLVFHAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNE 297 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L VE GA + + + + LVD +++Y + +++GEG Sbjct: 298 LHVEAGARLNGALLAAGLVDELLVYTAPLLLGEG 331 >gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107] gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107] Length = 354 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/330 (32%), Positives = 175/330 (53%), Gaps = 13/330 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64 +DA +M AL + G TS NP V +++ + G ++G G A G PHAEV AL +AG Sbjct: 2 WDA-WMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAG 60 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A+G T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G+ L G+ Sbjct: 61 DRAKGGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGL 120 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++++E A+L R R TLK A+ D ++ S I+G ++ V Sbjct: 121 DVISGVLQAEAAFQNRAFLHRVRTGRPWGTLKWAMGLDGRTALSNGESQWISGPTARRWV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR++SDA++VG GTV ADDP LT R G ++ P+R++L +L + +++ T+L + Sbjct: 181 HQLRSKSDAVIVGGGTVRADDPLLTSR--GRRKPEPLRVVLSRSMELPVTAQLWDTSLAS 238 Query: 244 PVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ + P + + K L+ L RG +L E G +A + Sbjct: 239 TLVAHGPEAQEQPF------PHGPQRLLLSASEPKPLMQELANRGCNRVLWECGPELAAA 292 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 I + + + ++G +PL E Sbjct: 293 AIRQGCIQEVAAVVAPKLMGGVAARTPLGE 322 >gi|82751356|ref|YP_417097.1| riboflavin specific deaminase [Staphylococcus aureus RF122] gi|82656887|emb|CAI81317.1| riboflavin specific deaminase [Staphylococcus aureus RF122] Length = 347 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/317 (33%), Positives = 158/317 (49%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 2 SQFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ Sbjct: 62 EGATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRDHGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 120 CVDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+L G TV DDP+ T + + +P+++IL + + +I + P+ I Sbjct: 180 HRHDAVLTGRRTVELDDPQYTTLIQDGK--NPIKVILSKSGNIHFNQQIYQDE-STPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN + L + +I II DL +L L RGV +LLVE G F+ S Sbjct: 237 YTENPN----LTTNQTHIEIICLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 +D ILY + +IG G Sbjct: 293 IDEFILYYAPKLIGGSG 309 >gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5] gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5] Length = 353 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/323 (36%), Positives = 164/323 (50%), Gaps = 30/323 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL +AG ARG Sbjct: 10 MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ SG G L G+ V Sbjct: 70 GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASG-GAATLRAAGVQVALG 128 Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R E+E G + A+LT ++ K A + D A S+ IT ++ VH Sbjct: 129 VRAQEAEAGNV---AWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR DA+L G+GTVL DDP LT R + P+R+++D + D+++ A Sbjct: 186 LRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARVRDGAAR 245 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + E P D R DL LL L RGV + L+EGG +A Sbjct: 246 TWIATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPTLAG 289 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 +F+ + LVD I+ Y + ++G G Sbjct: 290 AFLAAGLVDRIVGYVAPKLLGAG 312 >gi|237725969|ref|ZP_04556450.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D4] gi|229435777|gb|EEO45854.1| riboflavin biosynthesis protein ribD [Bacteroides dorei 5_1_36/D4] Length = 355 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 31/356 (8%) Query: 7 DARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +++S L+ + H GL T+ NP V +IV +IG G G HAEV A+ Sbjct: 4 DEKYISRCLQLA--HNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + Sbjct: 62 DENLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFIS 179 GI V ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 122 GIEVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLT 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH RA+ DAILVG T L D+P L+ R N +H P+R+++D L D ++ Sbjct: 182 SMLVHKKRAEHDAILVGRRTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFSG 239 Query: 240 ALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + V P ++L F K L +++ +L + + SLLVEG Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLDFSKD----------ILPQIMEVLYQKKIQSLLVEG 289 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 G+ + SFI+S L D + + + + G +E ++K + + + YFG ++ Sbjct: 290 GSILLQSFIDSSLWDEAFIEKVPLCLKNG-----IEAPSIQKKYFKLNKIYFGREI 340 >gi|212695385|ref|ZP_03303513.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855] gi|237711578|ref|ZP_04542059.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA] gi|265753006|ref|ZP_06088575.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA] gi|212662020|gb|EEB22594.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855] gi|229454273|gb|EEO59994.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA] gi|263236192|gb|EEZ21687.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA] Length = 355 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 184/356 (51%), Gaps = 31/356 (8%) Query: 7 DARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +++S L+ + H GL T+ NP V +IV +IG G G HAEV A+ Sbjct: 4 DEKYISRCLQLA--HNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + Sbjct: 62 DENLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFIS 179 GI V ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 122 GIEVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLT 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH RA+ DAILVG T L D+P L+ R N +H P+R+++D L D ++ Sbjct: 182 SMLVHKKRAEHDAILVGRRTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFSG 239 Query: 240 ALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + V P ++L F K L +++ +L + + SLLVEG Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLDFSKD----------ILPQIMEVLYQKKIQSLLVEG 289 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 G+ + SFI+S L D + + + + G +E ++K + + + YFG ++ Sbjct: 290 GSILLQSFIDSSLWDEAFIEKVPLCLKNG-----IEAPSIQKKYFKLNKIYFGREI 340 >gi|258546002|ref|ZP_05706236.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC 15826] gi|258518731|gb|EEV87590.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC 15826] Length = 369 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 172/327 (52%), Gaps = 5/327 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D +M AAL +R + T+ NP V C+IVK G +G+G G PHAE AL Sbjct: 1 MTTAAQDIPWMQAALELARQGIFSTAPNPRVGCVIVKGGEAVGKGFHVRAGEPHAEAHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYV LEPC+H GR+PPCA +I G+ RVVV DP+ V+G+G+ L Sbjct: 61 REAGAAARGATAYVNLEPCAHQGRTPPCADALIAAGVARVVVACRDPNPLVAGQGIARLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + + E E + + R R +T+K+A S D +A S IT + Sbjct: 121 AAGIDVTEGVCEEEAQALNSGFFRRITTGRPFVTVKLAASLDGKTALANGESQWITSEAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH R +DAI+ G G+++ D+ LT R L P+R+I+D + D+ + Sbjct: 181 RADVHYHRLAADAIIAGTGSIIRDNARLTARYPTELPNQPPLRVIIDSRLRTPRDAAVFD 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 +P++IV D + + + R L LL L RGV + VE GA+ Sbjct: 241 DP--SPILIVCGMDARAPNYPAHVEWLRLPLVGGRVPLPALLDELGTRGVNNAFVEAGAS 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324 +A +F+ L D I+LY + ++G G Sbjct: 299 LAGAFLEQNLADEILLYLAPCLLGSGA 325 >gi|260642492|ref|ZP_05859416.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM 17565] gi|260621884|gb|EEX44755.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM 17565] Length = 373 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 184/352 (52%), Gaps = 24/352 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E Sbjct: 31 EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGRIIGEGYHVRCGEAHAEVNAIRSVKDE 90 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 91 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLQNAGR 150 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++E E + ++T +R ITLK A S D I + P+ + ++ Sbjct: 151 EVIVG-VLEEECLHLIRRFITFNTLRRPFITLKWAESADQFIDIERIDGNPVLLSSPLTS 209 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA++ AI+VG T L D+P LT R +P+RI+LD + L D +I Sbjct: 210 MLVHKKRAENTAIMVGRRTALLDNPSLTVR--NWYGRNPIRIVLDRNLSLPNDLQIFNGE 267 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAV 298 + P ++ TE + P +K+++ I D LK ++ L R + SLLVEGG+ + Sbjct: 268 V--PTLVFTEKEHP------EEKSVSYITIDFGHNPLKLIMEELYQRNIQSLLVEGGSQL 319 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI++ L D + + + G+ SP + NF +++FG + Sbjct: 320 LQSFIDNELWDEAYIEKCPKRL-YSGVKSP----EISNNFSYSTKEHFGRQI 366 >gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans CJ2] gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas naphthalenivorans CJ2] Length = 370 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 110/325 (33%), Positives = 165/325 (50%), Gaps = 11/325 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D M A+ + + +TS NP V C++ G V+G+G T G PHAE+ AL +A Sbjct: 7 DTEMMPRAVALALAAMRITSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMALRDAAAQ 66 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G GATAYVTLEPCSH+GR+ PC +I GI+++V + DP+ VSG+G + L G Sbjct: 67 GHSVVGATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFERLRAAG 126 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ +E + + +R + K + +K+A S D +A S IT ++ Sbjct: 127 IEVEVGPGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITSAEARAD 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ A+L GIGTVL D+P L RL P I++D + LD+ + Sbjct: 187 GHAWRARACAVLTGIGTVLQDNPRLDVRLVSTPRQ-PHLIVVDSRLETPLDAHLFIAGRA 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAV 298 + +N+ AL K +IY + K LT +V R + L VE G+ + Sbjct: 246 LYIYAAVQNEAKKQAL--EAKGATVIYLPDANGKVDLTAMVQDLGRREINELHVEAGSKL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 S I + LVD +LY + ++G G Sbjct: 304 NGSLIRAGLVDEFLLYLAPKLLGPG 328 >gi|302333432|gb|ADL23625.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 343 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 156/314 (49%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGNKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYATKDNSLDTHGDDT--LRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ + +P+++IL + + +I + + I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQDGK--NPIKVILSKSGNIHFNQQIYQDESTL-IWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGG 324 ILY + +IG G Sbjct: 292 FILYYAPKLIGGSG 305 >gi|166154072|ref|YP_001654190.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 434/Bu] gi|166154947|ref|YP_001653202.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930060|emb|CAP03543.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 434/Bu] gi|165930935|emb|CAP06497.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 375 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|255349125|ref|ZP_05381132.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 70] gi|255503662|ref|ZP_05382052.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 70s] gi|255507341|ref|ZP_05382980.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis D(s)2923] gi|289525774|emb|CBJ15255.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis Sweden2] gi|296435349|gb|ADH17527.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis E/150] gi|296439066|gb|ADH21219.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis E/11023] Length = 375 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 108/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea 34H] gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea 34H] Length = 389 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 117/359 (32%), Positives = 180/359 (50%), Gaps = 55/359 (15%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDGI--VIGRGVTAYGGCPHAEVQALEEAGEE 66 MS A+ ++ TS NP V C++V K+G+ VIG G G HAEV AL EA Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60 Query: 67 A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +GATAYVTLEPCSH+GR+PPCA+ +++ G+ V+ + DP+ +VSG GL L + Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E ++ ++ + V ++ K+A S D MA S IT ++ Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 V LRAQS AI+ G +VL D+ ++T R + L E P+RI++D +L+ Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240 Query: 232 LDSKIIKTALLAPVIIVTENDD--------------------------PVLALAFRKKNI 265 + + + +P++I+ D PV + K I Sbjct: 241 PNLALFEHQ--SPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKI 298 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 N LK LL L RG+ +L+E GA ++ +FI LV+ +ILY++ ++G G Sbjct: 299 N--------LKALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDG 349 >gi|260753016|ref|YP_003225909.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552379|gb|ACV75325.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 323 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 163/320 (50%), Gaps = 44/320 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE AL + + Sbjct: 7 DIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMALSQC-Q 65 Query: 66 EARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ + GI Sbjct: 66 SLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDHRTNGQGISKMVAAGI 125 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++E + + + +RQ++ R ++TLK+A S D I + S ITG ++ Sbjct: 126 KVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGERARAHA 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL R +S+ I+VG T+ D P L RL L + SP + +L H ++ S I L Sbjct: 186 HLERMRSELIVVGRKTLEFDKPSLNVRLQSLGDRSPKKAVLG-HGEIP--SGWI--GLRE 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I+ D V L+EGGA A +F+ Sbjct: 241 PTDIIKTTADHV-----------------------------------LIEGGAKTAAAFL 265 Query: 304 NSRLVDSIILYRSQIVIGEG 323 LVD I+LYR+ I+IG+G Sbjct: 266 KGDLVDRILLYRAPILIGKG 285 >gi|257455158|ref|ZP_05620396.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus SK60] gi|257447491|gb|EEV22496.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus SK60] Length = 359 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 161/328 (49%), Gaps = 30/328 (9%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV----QALEEAGE 65 +MS A+ ++ T NPSV C+IVKD +IG G G PHAEV QA E + Sbjct: 16 YMSRAIELAKKGRFTTRPNPSVGCVIVKDNQIIGEGFHYQAGQPHAEVFALRQAYERDAK 75 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +GA AYVTLEPCSH+GR+PPCA +I+ GI RVV+ V DP+ +V G G+ L Q GI Sbjct: 76 HLQGAIAYVTLEPCSHHGRTPPCADALIQAGISRVVIAVVDPNPKVDGGGIAKLQQAGIE 135 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ + E + + LKIA S D MA S IT S+ V Sbjct: 136 VITGICEQAAYQLNEGFFKVMRGGLPFVRLKIATSLDGRTAMANGESKWITSDQSREDVQ 195 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----SPMRIILDPHFKLSLDSKIIKT 239 LRAQ+ AI+ G T+L D P L R L + P+ ++LD ++ + ++ Sbjct: 196 RLRAQAGAIITGSETILQDHPALNIRSQQLGANLDDIPQPLLVVLDRRQRIQMTDAWYQS 255 Query: 240 ALLA-PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + PV+++ ++ + L L T+ + +LVE GA V Sbjct: 256 QITHRPVLLIQDSTMSLTTL-------------------LNTLKDNYQINDVLVEAGATV 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 A SF+ LVD +++Y++ +G P Sbjct: 297 AASFLQQGLVDELVVYQAPCFLGNSAKP 324 >gi|33598380|ref|NP_886023.1| putative riboflavin-specific deaminase [Bordetella parapertussis 12822] gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis] Length = 386 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/326 (34%), Positives = 172/326 (52%), Gaps = 14/326 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV AL EA Sbjct: 9 DVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAAR 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+GL L G Sbjct: 69 GASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAG 128 Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + + + L+A + R + LK+A S D + S +TG ++ Sbjct: 129 IAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWMTGEAARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S +L G+GTVL DDP+L R +Q H P + ++D F++ D+++ Sbjct: 189 GHHWRARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG- 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 A V++ T D A +N+ +I D DL ++ L + + + VE GA Sbjct: 246 -AQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGA 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 ++ + + VD +++Y + +++G+ Sbjct: 305 GLSGALLAEDCVDELLVYLAPVLLGD 330 >gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces venezuelae ATCC 10712] Length = 417 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 120/326 (36%), Positives = 174/326 (53%), Gaps = 22/326 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M A+ + +G TS NP V C++ G +G G G PHAEV AL EAG Sbjct: 66 DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARG TAYVTLEPC+H GR+ PCAQ +IE GI RVV V DP+ + +G G L G+ Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNPQATG-GADTLRAAGVD 184 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + ++E E + A+LT R + K A + D I A S IT S+ VH Sbjct: 185 VRQGLLEDEAEAVNLAWLTSVRRGRPFVRWKYAATLDGRIAAADGTSRWITSAESRADVH 244 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPH-FKLSLDSKIIKTALL 242 LRA++DA++VG GT DDP L R G+ P+R+++D + ++++ A Sbjct: 245 RLRAEADAVVVGSGTARTDDPHLAVR--GIDAAVQPLRVVVDTEATAVKAGARVLDDA-- 300 Query: 243 APVII-VTENDDPVLALAFR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 AP +I V E+ D L R ++ +++ LL L RGV S+L+EGG Sbjct: 301 APTLIAVAEDADTALTDVVRLPRAERGLSV--------PALLDALHARGVRSVLLEGGPT 352 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ + VD ++ Y + +++G G Sbjct: 353 LAGAFVAAGAVDQVVGYLAPVLLGAG 378 >gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium ATCC 35110] gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium ATCC 35110] Length = 368 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 106/335 (31%), Positives = 167/335 (49%), Gaps = 11/335 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D ++ L+ ++ G S NP V +IV +G +IG G G PHAEV A+ Sbjct: 6 SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVIVHNGKIIGEGFHEVYGGPHAEVNAIGSVA 65 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + +T YV LEPC+H+G++PPCA II I RVV+ DP VSG+G + L Sbjct: 66 QPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRHA 125 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V ++ESE A++ ++KR + LK A + D I S IT S+ Sbjct: 126 GVEVKVGVLESEALRLNEAFIHFHIQKRPFVALKFAQTLDGKIATTSGDSKWITNKASRT 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR+ AIL+G T LADDPELT R ++ +P+R++LD + L +KI A Sbjct: 186 LGHQLRSWHSAILIGTNTALADDPELTVR--HVEGKNPVRVLLDRRLSVPLTAKIFNAAA 243 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 V ++N + +KN+ + + + ++ +L + + S+ VEGG+ Sbjct: 244 NTLVFTSSQNTNHPKVGKLNEKNVEVFFVTENEAGLSFSEIFQVLYEKKLLSVYVEGGSG 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLE 330 V I + + + ++G G+ + PLE Sbjct: 304 VYSRLIQEGYCEKFYGFIAPKIVGGDGLATFRPLE 338 >gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] Length = 353 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 117/323 (36%), Positives = 164/323 (50%), Gaps = 30/323 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL +AG ARG Sbjct: 10 MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVALAQAGTRARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ SG G L G+ V Sbjct: 70 GTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNPVASG-GAATLRAAGVQVALG 128 Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R E+E G + A+LT ++ K A + D A S+ IT ++ VH Sbjct: 129 VRAQEAEAGNV---AWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARIDVHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LR DA+L G+GTVL DDP LT R + P+R+++D + D+++ A Sbjct: 186 LRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADARVRDGAAR 245 Query: 243 APVIIVTE-NDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + E P D R DL LL L RGV + L+EGG +A Sbjct: 246 TWIATAAEVGAGP----------------DGRVDLPALLAELHHRGVRAALLEGGPTLAG 289 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 +F+ + LVD I+ Y + ++G G Sbjct: 290 AFLAAGLVDRIVGYVAPKLLGAG 312 >gi|149001717|ref|ZP_01826690.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|147760175|gb|EDK67164.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] Length = 341 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 7/296 (2%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 V +IVKD +IG+G + G PHAE AL+ E GAT YVTLEPC H+G++PPC Sbjct: 2 VGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGATLYVTLEPCCHFGKTPPCID 61 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKR 149 II+ GI RVV+ D + VSG+G++ L + + V ++E+E + ++ + Sbjct: 62 AIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGILENECLNLIKSFRKYITQHV 121 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ +K A+S D I S IT ++ VH LR AI+VG+ TV+ DDP LTC Sbjct: 122 PYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLTC 181 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL + +P+RII D H + L SKI+KTA I T ++D ++ I+ Sbjct: 182 RLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLYQNHGCEILS 239 Query: 270 CDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + DL L+ L + SL++EGG+ + S + ++VD + +Y + + G Sbjct: 240 IKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFG 295 >gi|222528581|ref|YP_002572463.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii DSM 6725] gi|222455428|gb|ACM59690.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii DSM 6725] Length = 371 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YVTLEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 67 YLLKNATMYVTLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +++ +++ E + + +I +K+A S D I V Sbjct: 127 EVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTEEENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + AILV + TV++D+P L R G P R++LD ++ L+ I+KTA Sbjct: 187 HSLRQKYMAILVSVNTVISDNPILNARY-GQIVRQPTRVVLDSKLRIPLECNIVKTADKY 245 Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN + + + +K I II+ DL + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDIQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + + R+ D Sbjct: 306 LLNFFLLKQRIAD 318 >gi|284033021|ref|YP_003382952.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836] gi|283812314|gb|ADB34153.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836] Length = 344 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 113/325 (34%), Positives = 159/325 (48%), Gaps = 30/325 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M A+ + +G T NP V C+I +DG G G A G PHAEV AL Sbjct: 4 ASPIDVAWMRRAIELAARGLGSTHPNPVVGCVITGRDGHPAGEGFHAVAGGPHAEVAALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG+ ARG TAYVTLEPC+H GR+ PCA +IE G+ RV+ V DP+ + +G G L Sbjct: 64 MAGDRARGGTAYVTLEPCNHTGRTGPCADALIEAGVARVLYAVPDPNRQAAG-GADKLRS 122 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 K + V++ ++ +E + H +L R +T K A + D S ITG ++ Sbjct: 123 KNVHVEQGLLRAEAEAVNHVWLHSVRMGRPFVTWKFATTLDGRSAAPDRSSRWITGEQAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIK 238 VH RA+ DAI VG TVL DDPELT R + P+R+++ D +I Sbjct: 183 ADVHRQRAECDAIAVGTQTVLTDDPELTVRDAQDRPVGRQPLRVVVG-------DREIPA 235 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 TA + R + D ++L L + L +EGG + Sbjct: 236 TARV------------------RNDRAETLLLPTHDPAEVLRQLDDHHIRHLWLEGGPTL 277 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 A +F+ S LVD I+ Y + V+G G Sbjct: 278 AAAFLRSGLVDQIVAYVAPAVLGSG 302 >gi|189462016|ref|ZP_03010801.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136] gi|189431230|gb|EDV00215.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136] Length = 344 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 112/323 (34%), Positives = 171/323 (52%), Gaps = 15/323 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ +R + + NP V +IV + +IG G G HAEV A+ +E Sbjct: 4 DEKYIRRCIQLARNGMCNAAPNPMVGAVIVCNDRIIGEGYHVRCGEGHAEVNAIRSVKDE 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L GI Sbjct: 64 SLLKKSTIYVSLEPCSHYGKTPPCADLIISKGIPRVVVGCVDPFSLVSGRGIQKLRDAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E+E + + ++T ++KR +ITLK A S D I + P+ + I+ Sbjct: 124 EVTVGVLENECRALIKRFVTFNIQKRPYITLKWAESADGFIDVNRESGQPVILSTPITSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ AILVG T L D+P LT R +P+R+++D L L+ K+ Sbjct: 184 YVHKQRAEHQAILVGRKTALLDNPSLTTR--NWYGKNPIRLVIDKELTLPLNLKLFDGKT 241 Query: 242 LAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V E + + ++ N NI L ++L IL + SLLVEGG+ + Sbjct: 242 PTWVFTALEKESTTNIIYYKLDFNQNI-------LPQILQILYENKLQSLLVEGGSQLLQ 294 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 SFI+ + D I + S+ ++ +G Sbjct: 295 SFIDEEIWDEIYIEYSEALLHKG 317 >gi|294635299|ref|ZP_06713797.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC 23685] gi|291091308|gb|EFE23869.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC 23685] Length = 319 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 106/290 (36%), Positives = 151/290 (52%), Gaps = 26/290 (8%) Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 PHAEV AL AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+ Sbjct: 1 PHAEVHALRMAGERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVA 60 Query: 113 GRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 GRGL L Q GI V +M +E + +L R ++ LK+ S D MA S Sbjct: 61 GRGLYRLQQAGIEVRHGLMLAEAEAVNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGES 120 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----QEH-------SPM 220 IT ++ V RAQS AIL TVLADDP LT R + L Q H P+ Sbjct: 121 QWITSAAARADVQRYRAQSSAILSSSATVLADDPSLTVRWDELDDETQRHYPREWLRQPL 180 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDD------PVLALAFRKKNINIIYCDCRD 274 R+I+D H +++ ++I ++ E D V L+ + + D Sbjct: 181 RVIVDSHNRVTPQHRLISQP--GETLLARETPDTQAWPSAVSQLSLPRNGAGL------D 232 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L L+ L R + S+ VE G +A + + + +VD +I+Y + ++G+ Sbjct: 233 LVLLMMQLGKRQINSVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAA 282 >gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] Length = 449 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 116/318 (36%), Positives = 165/318 (51%), Gaps = 11/318 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 ++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL Sbjct: 63 ATAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALR 122 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L Sbjct: 123 AAGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRA 181 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V+ ++ E + A+LT R + K A + D I S IT ++ Sbjct: 182 AGVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEAR 241 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LRA +DA+++G GT+ DDP+L R + G + P+R++LD ++ ++++ Sbjct: 242 ADVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDD 299 Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGA 296 A AP +I V E D + R DL LL L RGV S+L+EGG Sbjct: 300 A--APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGP 357 Query: 297 AVAHSFINSRLVDSIILY 314 +A +F+ +R VD +I Y Sbjct: 358 TLAGAFVAARAVDKVIGY 375 >gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] Length = 388 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 116/317 (36%), Positives = 165/317 (52%), Gaps = 11/317 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL Sbjct: 3 TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L Sbjct: 63 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++ E + A+LT R + K A + D I S IT ++ Sbjct: 122 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA +DA+++G GT+ DDP+L R + G + P+R++LD ++ ++++ A Sbjct: 182 DVHRLRAGADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDDA 239 Query: 241 LLAPVII-VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 AP +I V E D + R DL LL L RGV S+L+EGG Sbjct: 240 --APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPT 297 Query: 298 VAHSFINSRLVDSIILY 314 +A +F+ +R VD +I Y Sbjct: 298 LAGAFVAARAVDKVIGY 314 >gi|255009912|ref|ZP_05282038.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis 3_1_12] gi|313147700|ref|ZP_07809893.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12] gi|313136467|gb|EFR53827.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12] Length = 346 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 184/356 (51%), Gaps = 24/356 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ +R + S NP V +IV D +IG G G HAEV A+ + Sbjct: 3 EEKYMRRCIQLARNGLCNVSPNPMVGAVIVCDEQIIGEGYHVRCGEAHAEVNAIRSVKDP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPCSH+G++PPCA IIE I ++V+ DP +V+G+G+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPKIVIGCQDPFSKVAGKGIQKLRNAGR 122 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++E E + + ++T R +I LK A S D I + P+ + ++ Sbjct: 123 EVIVG-VLEKECRELIQKFITFHTLHRPYIVLKWAESADGFIDLERTEGHPVLLSTPLTS 181 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA+SDAI+VG T L DDP LT R H+P+RI LD + L S ++ + Sbjct: 182 MLVHKKRAESDAIMVGTRTALLDDPALTVR--HWYGHNPVRIALDRNHSLPQTSHLLDGS 239 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298 + P +I TE P KKN+ I D + L ++L L R + SL+VEGG + Sbjct: 240 V--PTLIFTECHRP------GKKNLEYIPLDYQTDILPQILATLYQRNLQSLMVEGGKIL 291 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 SFI S + D II+ RS + G+ +P + EK+F R Y + Sbjct: 292 LESFICSGIWDEIIIERSDKRL-YSGVKAPEISDKISYSEEKHFATTFRHYLKRNT 346 >gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM 12563] gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM 12563] Length = 368 Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 115/330 (34%), Positives = 175/330 (53%), Gaps = 11/330 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGE 65 ++M A+ ++ G TS NP V +IVKD +IG G G HAE+ A ++ GE Sbjct: 8 KYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDKIIGIGYHQKYGENHAEINAFLDAQKKGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GA YVTLEPCSHYG++PPCA II+ I++V++ D + +V+G G++ L GI Sbjct: 68 DVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGIE 127 Query: 126 VDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E + + KR + +K A++ D I + S IT ++ H Sbjct: 128 VVVNVLEEECRKLNEVFFYYIANKRPFVVMKYAMTIDGKIASSSGKSKWITSEKAREHSH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + AI+VGI TV+ D+P L CRL + +P+RIILD K+ L+S I KTA Sbjct: 188 RFRNKYSAIMVGINTVIEDNPTLNCRLPNTR--NPIRIILDSSLKIDLNSNICKTAKEIK 245 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL-VGRGVTSLLVEGGAAVA 299 I T ++D I II + +LK+L+ IL + + S+ VEGGA++ Sbjct: 246 TFIATISNDEKKIKEIESLGIEIIKTESDNGRVNLKELMKILGEDKNIDSVYVEGGASLH 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 S I RLV+ +++Y + + G SP+ Sbjct: 306 ASLIEERLVNKVLVYIAPKIFGGIKAKSPI 335 >gi|226306507|ref|YP_002766467.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus erythropolis PR4] gi|226185624|dbj|BAH33728.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus erythropolis PR4] Length = 350 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 119/307 (38%), Positives = 157/307 (51%), Gaps = 35/307 (11%) Query: 23 GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V A ++ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEPC+H Sbjct: 28 GFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPCNH 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---RMMESEGKIFL 138 GR+ PC+Q +I+ G+ VV V DP+ SG G L + GI V R E E L Sbjct: 88 QGRTGPCSQALIDAGVSAVVYAVGDPNPEASG-GAATLMRAGISVTAGLRAPEVEAGP-L 145 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG G Sbjct: 146 RAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGTG 205 Query: 199 TVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 TV ADDP LT R L H P+R+++ +I TA + DD Sbjct: 206 TVFADDPWLTARQPTGELAAHQPVRVVVG-------KREIPSTASVL--------DDTAP 250 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 L NI+ + + T +L+EGG +A +F+ + VD I Y + Sbjct: 251 TLVLNTDNIDEVVEALGEY------------TDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298 Query: 317 QIVIGEG 323 I++G G Sbjct: 299 PILLGAG 305 >gi|326388321|ref|ZP_08209917.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium nitrogenifigens DSM 19370] gi|326207053|gb|EGD57874.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium nitrogenifigens DSM 19370] Length = 321 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 117/318 (36%), Positives = 157/318 (49%), Gaps = 40/318 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M +A + L+ NP+V ++V++ V+GRG T GG PHAE +AL AG+ Sbjct: 4 DADWMRSAAALAARGRPLSRPNPAVGAVLVRENRVVGRGFTRAGGRPHAEAEALAMAGDA 63 Query: 67 ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 RGAT YVTLEPC+H R P CA ++ RVVV DPD R +G+G+ L GI Sbjct: 64 TRGATLYVTLEPCAHVSPRGPACADLVVAARPARVVVGCTDPDPRTAGQGIARLRDAGIA 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 VD + + L YL R E R +TLK+A S D I + S ITG ++ H Sbjct: 124 VDLIDCPAARASLAGYLRRTREGRPEVTLKLATSLDGRIALPSGESRWITGDAARAHAHA 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++DAILVG GT+ D P L RL GL E SP+R +L + D + + AP Sbjct: 184 ERARADAILVGGGTLRIDAPRLDVRLPGLAERSPLRWVL--TRGTAPDGWSAVSDITAPG 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 DD L VEGGA A F+ Sbjct: 242 AF----DD---------------------------------AQYLFVEGGAQAAAHFLAV 264 Query: 306 RLVDSIILYRSQIVIGEG 323 +VD ++LYR+ I+IG+G Sbjct: 265 DMVDRLLLYRAPILIGDG 282 >gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88] gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88] Length = 380 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 108/331 (32%), Positives = 177/331 (53%), Gaps = 6/331 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M A+ + G + NP V +IVKDG +IG G G HAE++A + Sbjct: 20 NLDEIYMKRAIELAHLGEGYVNPNPLVGAVIVKDGRIIGEGYHKKFGEAHAEIEAFKSCK 79 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ +G T YV LEPCSHYG++PPC II+ GI++V++ + DP+ V+GRGL+ L + I Sbjct: 80 EDPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKKANI 139 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E E + ++ K+ LK A + D I + S ITG S+ V Sbjct: 140 EVRVGTLEDECRNLNEIFIKYITYKKPFCILKWASTLDGKICSSIGDSRWITGEDSREYV 199 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL+R + +I+VG+ T+L D+P LT RL + +P RII+D + LD++I K Sbjct: 200 HLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRIIVDSKGRTPLDARIFKEEGDT 259 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 + ++ +D + F K II + DL+ L+ L + S+L+EGG + Sbjct: 260 FIATTSQIEDKKIK-EFEKVGAKIIIIPEKGRKVDLQYLVNYLTKLNIDSILLEGGGTLN 318 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 +S + +VD ++++ + ++G +P+E Sbjct: 319 YSALKEGIVDKVLMFLAPKILGGENSKTPIE 349 >gi|229493689|ref|ZP_04387474.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis SK121] gi|229319650|gb|EEN85486.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis SK121] Length = 350 Score = 165 bits (418), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 118/307 (38%), Positives = 157/307 (51%), Gaps = 35/307 (11%) Query: 23 GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V A ++ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEPC+H Sbjct: 28 GFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEPCNH 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---RMMESEGKIFL 138 GR+ PC+Q +I+ G+ VV V DP+ SG G L + GI V R E E L Sbjct: 88 QGRTGPCSQALIDAGVSAVVYAVGDPNPEASG-GAATLMRAGISVTAGLRAPEVEAGP-L 145 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG G Sbjct: 146 RAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGTG 205 Query: 199 TVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 TV ADDP LT R L H P+R+++ +I TA + DD Sbjct: 206 TVFADDPWLTARQPTGELAAHQPVRVVVG-------KREIPSTASIL--------DDTAP 250 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 L N++ + + T +L+EGG +A +F+ + VD I Y + Sbjct: 251 TLVLNTDNVDEVVEALGEY------------TDVLLEGGPRLAGAFLAAGYVDVIEAYIA 298 Query: 317 QIVIGEG 323 I++G G Sbjct: 299 PILLGAG 305 >gi|91225069|ref|ZP_01260291.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01] gi|91190012|gb|EAS76283.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01] Length = 375 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 170/336 (50%), Gaps = 28/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+ A Sbjct: 11 SDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L G Sbjct: 71 GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + ++ + LK+A S D ++ S IT ++ Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPAARQD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG---------LQEH--SPMRIILDPHFKLS 231 V RA S IL TV+ D+ L R + LQE P+R+ILD L+ Sbjct: 191 VQRYRAISGGILSTSKTVIDDNASLNVRWDDLPNSVQAQYLQEELRQPVRVILDRQNHLT 250 Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288 K+ T +IV + D P+L A D DL L I + Sbjct: 251 DALKLFHTD--GERVIVRSDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A + I + LVD +I+Y + ++G G Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333 >gi|54307992|ref|YP_129012.1| putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum SS9] gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum SS9] Length = 371 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 113/334 (33%), Positives = 176/334 (52%), Gaps = 20/334 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL A Sbjct: 3 SSIDHSMMLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFALRAA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L G Sbjct: 63 GEQAKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIAG 122 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ ++ + ++ R ++ LK+A S D ++ S ITG ++ Sbjct: 123 IEVQTGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLS 231 V RA++ AIL TV+ADDP L R + L E P R+I+D +++ Sbjct: 183 VQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRVT 242 Query: 232 LDSKIIK---TALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 D K+ LLA + E D V + K++ + + +L L+ L + + Sbjct: 243 PDFKLFSLEGETLLARAEMGQETWPDSVTQVLIPKQDDS----EQLNLTSLMLELAKQDI 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + VE GA +A + + LVD +ILY++ ++G Sbjct: 299 NHIWVEAGAELAGGLLAAGLVDELILYQAPKLMG 332 >gi|15605463|ref|NP_220249.1| riboflavin deaminase [Chlamydia trachomatis D/UW-3/CX] gi|237805081|ref|YP_002889235.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/TZ1A828/OT] gi|255311561|ref|ZP_05354131.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 6276] gi|255317862|ref|ZP_05359108.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 6276s] gi|13633735|sp|O84735|RIBD_CHLTR RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|3329187|gb|AAC68325.1| Riboflavin Deaminase [Chlamydia trachomatis D/UW-3/CX] gi|231273381|emb|CAX10296.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/TZ1A828/OT] gi|296436276|gb|ADH18450.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/9768] gi|296437205|gb|ADH19375.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/11222] gi|296438136|gb|ADH20297.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/11074] gi|297140637|gb|ADH97395.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/9301] Length = 375 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|325977849|ref|YP_004287565.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177777|emb|CBZ47821.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 351 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 183/357 (51%), Gaps = 21/357 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA EE Sbjct: 5 YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPEEL 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI +V Sbjct: 65 ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++E+E + Y KR ++ LK AVS D I + G + +T + VH Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K AP Sbjct: 184 RDDYQAILVGADTVLIDNPQLFGA--GTSLYPPVRVILDETGRIFDKRELQIFKNQ-SAP 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I + +A +I +I + +L L + + S+ VEGGA V +F+ Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaeromyxobacter dehalogenans 2CP-C] Length = 392 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 122/323 (37%), Positives = 175/323 (54%), Gaps = 9/323 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM ALR + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG AR Sbjct: 27 RFMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALAR 86 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V Sbjct: 87 GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAVVK 146 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + + T E+R +TLK AV+ D I + ++G ++ VH LR Sbjct: 147 GVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRLR 206 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+LVG GT ADDP LT RL P+R++LD L + + AP ++ Sbjct: 207 DRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLV 265 Query: 248 VTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P + ++ C DL+ LL L RGV LLVEGGA V F+ Sbjct: 266 AHAAPAPARPYG---PGVELLRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFL 322 Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326 + LVD + ++ + + G G+P Sbjct: 323 EAGLVDRVAVFVAPKIAGGDGVP 345 >gi|237803160|ref|YP_002888354.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/Jali20/OT] gi|231274394|emb|CAX11189.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/Jali20/OT] Length = 375 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|163847753|ref|YP_001635797.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus J-10-fl] gi|222525619|ref|YP_002570090.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl] gi|163669042|gb|ABY35408.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus J-10-fl] gi|222449498|gb|ACM53764.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl] Length = 391 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/317 (35%), Positives = 159/317 (50%), Gaps = 9/317 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 VG TS NP V ++V+DG V+G G T G PHAE AL AGE ARGA Y TLEPC+ Sbjct: 25 VGRTSPNPPVGAVVVRDGQVVGLGATQPAGGPHAERIALAAAGERARGADLYTTLEPCTF 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF--LH 139 YGR+PPC + II GIRRV DPD R+ L GI V R+ + L Sbjct: 85 YGRTPPCTEAIIAAGIRRVFFIAHDPDPRMGDGAAAVLQPAGIEVYRITTGAATVAGQLA 144 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 + R R +T K A++ D I A S IT ++ QVH LR Q D I+VG+GT Sbjct: 145 PFRCRVQCGRPLVTAKYAMTLDGRIATASGDSRWITDPAARAQVHRLRDQVDVIMVGVGT 204 Query: 200 VLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 + DDP+LT RL+ + P+R+I+D + L +++++ L +I +P Sbjct: 205 IRNDDPQLTTRLDQHWREPRHPLRVIVDSRGQTPLHARVVRGDLPGQTLIACVQPEPAWL 264 Query: 258 LAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A + + + ++ L LL L G LLVEGGA + + L+D I Sbjct: 265 AAMQSRGVRVVQFPPDATGRVALAPLLHYLAHEGYNHLLVEGGAMLLGALHAECLIDEIW 324 Query: 313 LYRSQIVIGEGGIPSPL 329 + V+ + P P+ Sbjct: 325 AFIGARVVNDALAPGPM 341 >gi|294777680|ref|ZP_06743131.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510] gi|319640266|ref|ZP_07994991.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A] gi|294448748|gb|EFG17297.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510] gi|317388041|gb|EFV68895.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A] Length = 350 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 115/350 (32%), Positives = 184/350 (52%), Gaps = 19/350 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+GRG++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPFSQVAGRGIEKLRKAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R N +H P+R+++D L D ++ + Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFNGKI 241 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300 V P + + N +D L +++ +L + + SLLVEGG+ + Sbjct: 242 KTFVFTRESPCQPNALTEYISLDFN------KDILPQIMEVLYQKKIQSLLVEGGSILLQ 295 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI+S L D + ++ + + GI +P ++K + + YFG ++ Sbjct: 296 SFIDSGLWDEAFIEKAPLRLN-NGIQAP----SIQKKHFKLNKIYFGREI 340 >gi|313835935|gb|EFS73649.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA2] gi|314970655|gb|EFT14753.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA3] gi|328906122|gb|EGG25897.1| riboflavin biosynthesis protein RibD [Propionibacterium sp. P08] Length = 331 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV D VIG+G G PHAE++AL +AG+ ARGATA VTLEPC+H GR+ P Sbjct: 25 NPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQAGDGARGATAVVTLEPCNHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ + E L+A T Q+ Sbjct: 85 CSHALLDAGITRVVIAQPDPNPAASG-GEQWLRAHGVEAVTGVLGEKATTLNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L R++ AI++G GT LADDP Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARHQVQLGRSRCGAIVIGTGTALADDPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 L RL G+ P+R++ V D P R + Sbjct: 204 LVVRLPGVTR-QPLRVV------------------------VGLRDLPA-DCHLRDDSAP 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L L RG+ + +EGG +A +F+ + LVD +I + + +V+G+G Sbjct: 238 TLHIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGAFLAADLVDEVIAHLAPMVLGDG 294 >gi|148544108|ref|YP_001271478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri DSM 20016] gi|184153479|ref|YP_001841820.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112] gi|148531142|gb|ABQ83141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri DSM 20016] gi|183224823|dbj|BAG25340.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112] Length = 352 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 164/324 (50%), Gaps = 10/324 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64 DA FM A+ + T NP V ++VK+G V+ RG T YGG HAE A+ + Sbjct: 3 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGI-HAERDAIGKLTP 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ I Sbjct: 62 KQGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNI 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IV + E L+ Y +R +TLK AVS D + IT V Sbjct: 122 IVKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALL 242 H R IL+G T + D+P L + P+RI+LD +L + + + T Sbjct: 182 HTERGNFQGILIGSQTAIIDNPTLLT--TSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQ 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 AP I TEN A K+I + Y + +L L + + S+ VEGG V +F Sbjct: 240 APTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAF 296 Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326 + L + +I Y + ++GE G+P Sbjct: 297 LRKGLFEELITYLAPQMLGEKGVP 320 >gi|314927222|gb|EFS91053.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL044PA1] Length = 331 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 155/297 (52%), Gaps = 28/297 (9%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IV D VIG+G G PHAE++AL +AG+ ARGATA VTLEPC+H GR+ P Sbjct: 25 NPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQAGDGARGATAVVTLEPCNHTGRTGP 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT-RQV 146 C+ +++ GI RVV+ DP+ SG G QWL G+ + E L+A T Q+ Sbjct: 85 CSHALLDAGITRVVIAQPDPNPAASG-GEQWLRAHGVEAVTGVLGEKATTLNADWTFSQI 143 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + K A S D S ITG +++QV L R++ AI++G GT LADDP Sbjct: 144 HRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARHQVQLGRSRCGAIVIGTGTALADDPR 203 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 L RL G+ P+R++ V D P R + Sbjct: 204 LVVRLPGVPR-QPLRVV------------------------VGLRDLPA-DCHLRDDSAP 237 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++L L RG+ + +EGG +A +F+ + LVD +I + + +V+G+G Sbjct: 238 TLHIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGAFLAADLVDEVIAHLAPMVLGDG 294 >gi|297748861|gb|ADI51407.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis D-EC] gi|297749741|gb|ADI52419.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis D-LC] Length = 400 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 36 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 95 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 96 AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 155 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 156 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 215 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 216 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 275 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 276 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 335 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 336 QKLVNAGVIYWGPKFLGDQGQP 357 >gi|227364534|ref|ZP_03848595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri MM2-3] gi|325682351|ref|ZP_08161868.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A] gi|227070371|gb|EEI08733.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri MM2-3] gi|324978190|gb|EGC15140.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A] Length = 355 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 164/324 (50%), Gaps = 10/324 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64 DA FM A+ + T NP V ++VK+G V+ RG T YGG HAE A+ + Sbjct: 6 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGI-HAERDAIGKLTP 64 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++ +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ I Sbjct: 65 KQGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNI 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IV + E L+ Y +R +TLK AVS D + IT V Sbjct: 125 IVKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMV 184 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALL 242 H R IL+G T + D+P L + P+RI+LD +L + + + T Sbjct: 185 HTERGNFQGILIGSQTAIIDNPTLLT--TSPTKFPPVRIVLDRRGRLKDNPTLHLLTDGQ 242 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 AP I TEN A K+I + Y + +L L + + S+ VEGG V +F Sbjct: 243 APTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIP 326 + L + +I Y + ++GE G+P Sbjct: 300 LRKGLFEELITYLAPQMLGEKGVP 323 >gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY] gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY] Length = 370 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 167/323 (51%), Gaps = 11/323 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65 F+S AL + + L++ NP V C+I D G V+G+G T G PHAEV AL +A G Sbjct: 7 FISQALGLAAQALFLSNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGN 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + RGATAYVTLEPC+H GR+ PC +I+ GI RVV V DP+ V+G+G L G+ Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVA 126 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ +E + + +R V + +K A S D + + S IT ++ H Sbjct: 127 VEAGPGAAETRELNIGFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L GIGTVL DDP L R P +I+D + +++ A Sbjct: 187 AWRARACAVLSGIGTVLEDDPLLNVR-EVATPRQPHLVIVDSRLQTPPGARLFDVADRQ- 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300 V+I + A A R + ++ + R DL +L L R V L VE G + Sbjct: 245 VLIYAAQGEAQAAEALRARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNG 304 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 SF+ LVD ++LY++ +++G G Sbjct: 305 SFLREGLVDEMLLYQAPLLLGSG 327 >gi|306830959|ref|ZP_07464121.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426982|gb|EFM30092.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 351 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 124/357 (34%), Positives = 183/357 (51%), Gaps = 21/357 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA EE Sbjct: 5 YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPEEL 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI +V Sbjct: 65 ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++E+E + Y KR ++ LK AVS D I + G + +T + VH Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K AP Sbjct: 184 RDDYQAILVGADTVLIDNPQLFGA--GTSLYPPVRVILDETGRIFGKRELQIFKNQ-SAP 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I + +A +I +I + +L L + + S+ VEGGA V +F+ Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus ATCC 27064] gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus ATCC 27064] Length = 379 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 115/310 (37%), Positives = 162/310 (52%), Gaps = 11/310 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G + G G G PHAEV AL AG ARG Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + SG G L G+ V+ Sbjct: 61 GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNPQASG-GAGTLRAAGVRVECG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+LT R + K A + D I S IT ++ VH LRA Sbjct: 120 LLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARADVHRLRA 179 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +DA+++G GT+ DDP+L R + G + P+R++LD ++ ++++ A AP +I Sbjct: 180 GADAVVIGSGTLRTDDPQLAVRGIEGAVQ--PLRVVLDSRATVTPAARVLDDA--APTLI 235 Query: 248 -VTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V E D + R DL LL L RGV S+L+EGG +A +F+ Sbjct: 236 AVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVA 295 Query: 305 SRLVDSIILY 314 +R VD +I Y Sbjct: 296 ARAVDKVIGY 305 >gi|33593884|ref|NP_881528.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama I] gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama I] gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS] Length = 386 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 172/326 (52%), Gaps = 14/326 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D ++ AL +R + T+ NP V C+IV+DG V+G G T G PHAEV AL EA Sbjct: 9 DVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAAR 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RV+G+GL L G Sbjct: 69 GASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAG 128 Query: 124 IIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + + + L+A + R + LK+A S D + S ITG ++ Sbjct: 129 IAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWITGEAARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S +L G+GTVL DDP+L R +Q H P + ++D F++ D+++ Sbjct: 189 GHHWRARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG- 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 A V+I T D A +N +I D DL ++ L + + + VE GA Sbjct: 246 -AQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGA 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 ++ + + VD +++Y + +++G+ Sbjct: 305 GLSGALLAEDCVDELLVYLAPVLLGD 330 >gi|262340928|ref|YP_003283783.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272265|gb|ACY40173.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 343 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/319 (31%), Positives = 165/319 (51%), Gaps = 15/319 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 FMS A++ ++ +G+TS NP V C+I ++G +I G G HAE A+ ++ Sbjct: 7 FMSRAIQLAKNGLGMTSPNPMVGCVIERNGFIISEGWHYKKGMDHAEAIAINRIKNKSLF 66 Query: 69 -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H+G + PC II+ I R+VV + DP +V G G+Q L + GI ++ Sbjct: 67 LDSTLYVTLEPCVHFGETSPCVDLIIKNHIPRIVVGIQDPHDKVKGLGIQKLKEYGIEVI 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +++++ + + T + R +I LK A S D IG ++ I+G ++ H Sbjct: 127 ENVLKNKCRFLNKRFFTFHEKNRPYIILKWAQSHDGFIGSENKKNIWISGTYARQLNHKW 186 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ D+ILVG TVL D+P+L R +P+RI +D K+S DS I ++ Sbjct: 187 RAEEDSILVGRKTVLNDNPKLNVR--EWFGSNPIRIFIDKKLKIS-DSHFILDGTQKTIV 243 Query: 247 IVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + +KNI I + + + +L L + + SL+VEGG SFI Sbjct: 244 FTEKKKE-------NQKNIEYIQISFEGKIINHILNFLYKKNILSLIVEGGKKTLESFIK 296 Query: 305 SRLVDSIILYRSQIVIGEG 323 + D ++ + + +G Sbjct: 297 ENVWDECRIFVCDVTLKKG 315 >gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii DSM 271] gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii DSM 271] Length = 373 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 118/361 (32%), Positives = 180/361 (49%), Gaps = 18/361 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M L +R GL S NP V +IV + V+G G G PHAEV AL + Sbjct: 11 DEYYMHRCLELARKGAGLVSPNPMVGSVIVVEDRVVGEGFHERYGGPHAEVNALASVSDA 70 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV LEPCSHYG++PPC+ II IRRVVV DP +V+G+G++ L Q G+ Sbjct: 71 SLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKLRQAGV 130 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +++ E + A++ + LK A + D I +A S +TG S+ +V Sbjct: 131 EVTIGVLQRESEALNEAFIKSHTISMPFVVLKTAQTIDGRIAVASGESKWVTGAESRREV 190 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R+ DA++ TV+AD+ LT R + +P+R++LD ++ L S I A Sbjct: 191 HRMRSVHDAVMTTSSTVIADNSRLTVR--HCEGRNPVRVVLDRLLRVPLSSAIFDGE--A 246 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVG-RGVTSLLVEGGA 296 I+ T N A K + +I C D DL +L L + S++VE G Sbjct: 247 KTILYTSNALGSSEKARALKAMGVIVCAAGDDGDFLDLSAVLKSLHDEHALLSIMVEAGG 306 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCL 352 +A + I RLVD I+ + + + G G+ + G + V R + G+D+C+ Sbjct: 307 TLAGALIRHRLVDRIVWFVAPKLFGADGLGAVGSLGLQSVDDAPVMRFSSSRFLGNDLCI 366 Query: 353 E 353 E Sbjct: 367 E 367 >gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu] Length = 257 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 99/244 (40%), Positives = 140/244 (57%), Gaps = 7/244 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++A Sbjct: 3 SDTDFAHMQRALALAARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RSRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDDA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + H RA++ AIL GIGTV DDP+LT R G+ P R+++D +L LD+++++ Sbjct: 183 RLDGHAWRARACAILTGIGTVREDDPQLTVR--GIDTPRQPRRVLVDSRLELPLDARLLE 240 Query: 239 TALL 242 A L Sbjct: 241 GAPL 244 >gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens] Length = 393 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 184/342 (53%), Gaps = 34/342 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA +M + +R VG TS NP V C+IVKDG ++GRG G PHAEV AL EA Sbjct: 25 TEVDAFYMRMCVDLARQAVGKTSPNPIVGCVIVKDGRIVGRGFHPKAGEPHAEVFALREA 84 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYV+LEPC+HYGR+PPC+Q +++ ++RVVV V DP+ +V G+G++ L G Sbjct: 85 GPLAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAG 144 Query: 124 IIVDRMMESEGKIFLHA---YLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFIS 179 I V ++ E + L A ++ R R +TL+ ++S D +G G + G S Sbjct: 145 IEV--VVGVEETLCLKANESFMHRMATGRPFVTLRYSMSMDGGFLGNMGLSNAQ-GGLYS 201 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K L ++DA+++ VL DDP+L G ++ P+R+IL L ++SK+ T Sbjct: 202 K-----LLQENDAVVITDAAVL-DDPDLLSSEPGAKQ--PLRVILARSLDLPVESKVFDT 253 Query: 240 ALLAPVIIVTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 + +++ + D + R ++++ + L+ +L++ G T Sbjct: 254 SYAKTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDLTLENVLSVCYQLGAT 313 Query: 289 SLLVEGGAAVA---HSFINSRLVD-----SIILYRSQIVIGE 322 S+L++ V+ +F+ + +D +++ + I +GE Sbjct: 314 SVLLDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGE 355 >gi|301336274|ref|ZP_07224476.1| riboflavin-specific deaminase [Chlamydia muridarum MopnTet14] Length = 368 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 163/322 (50%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A++++ G Sbjct: 11 FMRKAVALGERGRLFAPPNPWVGCVIVKNGCVIGEGWHKGIGFPHAEVCAIQDSPCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L + GI V Sbjct: 71 AEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVALLDPDPRVCKKGIARLREAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E + L YL ++ + +K A S D S I+G +++ V LRA Sbjct: 131 IGSKEAQASLQPYLHQRETGLPWVVMKTAASLDGQTADREGRSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S A++VG TV D+P L+ R L L E P+R+++D K+ LD+++ + ++ Sbjct: 191 ESQAVIVGSRTVCLDNPRLSARQALGNLYERQPLRVVIDSLGKVPLDARVWNSDSGKSLL 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 TE + + + DL++LL L +G +L+EGGA + +F Sbjct: 251 ATTEQCSLEYMQRLEDLGVEVWQSSSQQVDLRELLQTLAAKGCLQVLIEGGAQLHSAFWK 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 LV++ ++Y +G+ G P Sbjct: 311 EHLVNAGVIYWGPKFLGDQGSP 332 >gi|262196460|ref|YP_003267669.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM 14365] gi|262079807|gb|ACY15776.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM 14365] Length = 367 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 116/334 (34%), Positives = 172/334 (51%), Gaps = 14/334 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+ L +R G T+ NP V C+IV G VI G G PHAE +AL + A G Sbjct: 1 MARCLELARRAEGRTAPNPMVGCVIVAPSGEVIAEGYHRRAGAPHAEAEALAQLDGRAPG 60 Query: 70 ATAYVTLEPCSHYG--RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 T YV LEPC H R+ PCA + E GI R+VV + DP +R G WL+++G+ V Sbjct: 61 CTMYVNLEPCRHRRKRRTVPCAPAVAEAGIARLVVGMGDP-IRSHAGGAAWLARQGVSVT 119 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 R ++ ++ + ++TR + R LK A++ D + S ITG ++ H L Sbjct: 120 RGVLRADCRDLNRGFITRARKGRPWFALKAAMTLDGKVATRTGDSQWITGPQARAHGHGL 179 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-- 244 R + DA+LVGIGTVLADDP LT R P+R+++D + LD++++ +P Sbjct: 180 RDRLDAMLVGIGTVLADDPRLTAR-GARDARDPVRVVVDSRLRTPLDARLLPANTSSPAR 238 Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 II P LA + + R DL+ L L + ++LVEGGA + Sbjct: 239 TIIAASERAPRTRERRLADAGAEVWRVGAGPRVDLEALAQRLAAAELNTVLVEGGAELHA 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 +F+ + L D ++LY + +V+G G S L G+L Sbjct: 299 AFVAADLADELLLYVAPMVLGGRGRDSGL--GWL 330 >gi|288904903|ref|YP_003430125.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34] gi|288731629|emb|CBI13184.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34] Length = 351 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 122/360 (33%), Positives = 182/360 (50%), Gaps = 27/360 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA EE Sbjct: 5 YMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEAPEEL 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI +V Sbjct: 65 TNSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++E+E + Y KR ++ LK AVS D I + G + +T + VH Sbjct: 125 TQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETNRFVHDE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R AILVG TVL D+P+L G + P+R+ILD ++ D + ++ Sbjct: 184 RDDYQAILVGADTVLIDNPQLLGA--GTTLYPPVRVILDEIGRI-FDKRELQ-------- 232 Query: 247 IVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I PV + R+ +I +I + +L L + + S+ VEGGA V + Sbjct: 233 IFKNQSAPVYIFSRRQVTNLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDA 292 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 293 FLASDLWDELISYMTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|76789470|ref|YP_328556.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlamydia trachomatis A/HAR-13] gi|76168000|gb|AAX51008.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis A/HAR-13] Length = 375 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 160/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G VIG G G PHAEV A+++ G Sbjct: 11 FMRKAVALGEKGRIFAPPNPWVGCVIVKNGGVIGEGWHQGIGSPHAEVCAVQDQKCSLEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L GI V Sbjct: 71 AEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + S E K L YL ++ + +K A S D G S I+G +++ V LRA Sbjct: 131 VGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TV D+P L+ R L E P+R+++D + L+S++ + + + Sbjct: 191 ESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLF 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T+ + + + DLK LL L RG +LVEGGA + +F Sbjct: 251 ATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQ 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 +LV++ ++Y +G+ G P Sbjct: 311 QKLVNAGVIYWGPKFLGDQGQP 332 >gi|302871184|ref|YP_003839820.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor obsidiansis OB47] gi|302574043|gb|ADL41834.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor obsidiansis OB47] Length = 371 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/313 (31%), Positives = 167/313 (53%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPC H+G+ PPC + II+ GI++V++ DP+ V+G+G+Q L Q GI Sbjct: 67 NSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVIIATRDPNPLVNGKGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ +++ E + + + +I +K+A S D I V Sbjct: 127 EVVEGVLQKEAESVNKEFFKYMKKGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R+++D + ++ L+ I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNVRY-GEIIRQPIRVVIDTNLRIPLECNIVKTSDEY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D +K I II+ +L + + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIKLLSQKGIKIIFAKQSEDGHLELSDVFSKLAQQKIISVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 MLNFSLLKKRIAD 318 >gi|153808975|ref|ZP_01961643.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185] gi|149128308|gb|EDM19527.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185] Length = 348 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 110/317 (34%), Positives = 168/317 (52%), Gaps = 19/317 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E Sbjct: 3 EEKYMRRCIELAKNGLCNAAPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDE 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLKDAGR 122 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++ESE + + ++T R +ITLK A S D+ I + P+ + ++ Sbjct: 123 EVIVG-VLESECRQLIRRFITFNTLHRPYITLKWAESADHFIDLERTDGQPVVLSSPLTS 181 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA+S AI+VG T L D+P LT R +P+R++LD L D ++ Sbjct: 182 MLVHKRRAESVAIMVGRRTALLDNPSLTVR--NWYGRNPIRVVLDRTLSLPNDLQLFDGN 239 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298 + P ++ T N P KNI I D +++ L R + SLLVEGG+ + Sbjct: 240 V--PTLVFTANKHP------EAKNITYITIDFNHNLFTQIMEELYQRKIQSLLVEGGSQL 291 Query: 299 AHSFINSRLVDSIILYR 315 SFI + L D I + + Sbjct: 292 LQSFIANELWDEIYIEK 308 >gi|312128288|ref|YP_003993162.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor hydrothermalis 108] gi|311778307|gb|ADQ07793.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor hydrothermalis 108] Length = 371 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPC H+G+ PPC + II+ GI++VV+ DP+ V+G+G+Q L Q GI Sbjct: 67 YSLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVIATRDPNPFVNGKGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ ++E E + + +I +K+A S D I V Sbjct: 127 EVVEGVLEKEAESINKDFFKYMKTGIPYIAIKVAHSIDGKIATPSNKRFLFNTEEENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R++LD ++ + I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPFECNIVKTSDEY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D +K I II+ +L + + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLELSDVFSKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 LLNFSLLKQRIAD 318 >gi|324999324|ref|ZP_08120436.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudonocardia sp. P1] Length = 368 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/318 (35%), Positives = 165/318 (51%), Gaps = 28/318 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL S G TS NP+V C+++ + G V+G G T G PHAE AL EAG+ A G Sbjct: 32 MRRALAASDLVHGTTSPNPAVGCVVLDRAGAVVGTGATTPPGGPHAERVALAEAGDRAAG 91 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--D 127 TA VTLEPC+H GR+PPC ++E GI RV + DP+ +G GL L GI V Sbjct: 92 GTAVVTLEPCNHSGRTPPCVDGLLEAGIARVYAALADPNPVAAG-GLDRLRAAGIEVTLG 150 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + G+ L +L RQ R H+T K+A + D + A S ITG ++ +VH LR Sbjct: 151 TLAGEVGRGPLRGWLHRQHTGRPHVTWKVATTLDGRVAAADGTSRWITGPEARGEVHDLR 210 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DAI+ G GTVL DDP LT R L +H P+R+++ H + +++ A Sbjct: 211 RRMDAIVAGTGTVLDDDPALTARRPDGTLFDHQPLRVVVG-HRDVPPGARLSNRA----- 264 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +++ RD ++L LV R +L+EGG +A +F+ + Sbjct: 265 ----------------AGEAEVVHLRTRDPGEVLAELVRRDTVDVLLEGGPTLAGAFVAA 308 Query: 306 RLVDSIILYRSQIVIGEG 323 VD ++++ + ++G G Sbjct: 309 GAVDRVLVHLAPALLGAG 326 >gi|242374059|ref|ZP_04819633.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis M23864:W1] gi|242348184|gb|EES39786.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis M23864:W1] Length = 347 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/317 (32%), Positives = 167/317 (52%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AG+ A Sbjct: 2 SRFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGQAA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT YV+LEPC+H+G +PPC IIE GI++V+ + D + +G + L + GI V+ Sbjct: 62 KDATIYVSLEPCTHHGSTPPCVDKIIEFGIKKVIYAI--KDTTLVSKGDEILKEAGIEVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + +T+K++ S D S IT K V+ LR Sbjct: 120 FQFNEDAAELYKDFFPAKRKGIPELTVKVSSSLDGKQATDLDESKWITNKEVKEDVYRLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA++ G T+ ADDP T R+ + +P+R+IL ++ + ++ K + + I Sbjct: 180 HEHDAVVTGRKTIEADDPLYTTRVPDGK--NPIRVILSKTGDINFEHQLFKDT-TSQIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN+ L K+I II + ++L L RG+ LLVE G + F+ S Sbjct: 237 YTENE----KLKNNDKHIEIINMQECETTEILKDLYRRGIGKLLVEAGPNITSQFLQSDH 292 Query: 308 VDSIILYRSQIVIGEGG 324 ++ +ILY + +IG G Sbjct: 293 LNELILYLAPKLIGGSG 309 >gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 367 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 188/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LERLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|124514350|gb|EAY55863.1| riboflavin biosynthesis protein RibD [Leptospirillum rubarum] Length = 388 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/322 (39%), Positives = 175/322 (54%), Gaps = 10/322 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE ARG Sbjct: 8 FMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGERARG 67 Query: 70 ATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L + G+ V+ Sbjct: 68 ATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELREGGVSVET 127 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + +L+ R +TLK A S D I A S I+G S H LR Sbjct: 128 GLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYAHQLR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + DAI+VG+GTVL D+P LT RL GL++ H P+R+ILD + DS++ +T +PV Sbjct: 188 QEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRVILDSLGRTPPDSRLFETISESPVW 247 Query: 247 IVTENDDPVLALA-FRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGGAAVA 299 I+ P +A K K LL L+ + +LLVEGGA V Sbjct: 248 IMAGEHAPEDRVARLEDKGARTFRLPAGSDGKGLRLSSLLAALLESRLLTLLVEGGAQVN 307 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 SF+ RLVDSI L + ++IG Sbjct: 308 GSFLQERLVDSIRLVLAPLLIG 329 >gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421] gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421] Length = 366 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 13/338 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V+ D +M L + G T+ NP V ++V DG+ +G G G PHAE AL Sbjct: 2 VAVSDEDWMERCLALAEQAWGRTTPNPLVGAVVVNDGLAVGEGFHPKAGAPHAEAFALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+H+GR+PPC + I+ G++RVV+ + DP+ VSGRGL+ L Sbjct: 62 AGDLARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTA 121 Query: 123 GI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI ++ E + F H T R LK A++ D S I+G Sbjct: 122 GIEVSVGVLSDRCERLNEAFSHFMRT----GRPFGVLKYAMTLDGKTATRTGHSFWISGQ 177 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ + H LRA +DA++VG TV DDP+LT RL + +P+R++L L ++++ Sbjct: 178 AARARTHRLRAFADAVIVGGNTVRLDDPQLTVRL--AEGRNPLRVVLSRTLALPAEARLW 235 Query: 238 KTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 +P ++ T DP + + + + D +L L S+L E G Sbjct: 236 LDQTPSPTLVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLASYPCVSVLWECGG 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 +A S + V +I + + ++G +P+ EG+ Sbjct: 296 TLAWSALTDGSVQKVICFVAPCLVGGAQAYTPVAGEGF 333 >gi|269965078|ref|ZP_06179243.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B] gi|269830381|gb|EEZ84606.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B] Length = 375 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/336 (33%), Positives = 168/336 (50%), Gaps = 28/336 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+ A Sbjct: 11 SDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRMA 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L G Sbjct: 71 GEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDAG 130 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E + ++ + LK+A S D + S IT ++ Sbjct: 131 IEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALNNGQSQWITSPAARQD 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLS 231 V RA S IL TV+ D+ L R + L + P+R+ILD L+ Sbjct: 191 VQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHLT 250 Query: 232 LDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVT 288 K+ T +I+ + D P+L A D DL L I + Sbjct: 251 GALKLFHTD--GERVIIRSDGDCIPLLDSA-----------DQIDLSTTLKRISDEHHIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L VE GA +A + I + LVD +I+Y + ++G G Sbjct: 298 HLWVEAGATLASAMIKANLVDELIVYLAPKLMGSDG 333 >gi|330466988|ref|YP_004404731.1| riboflavin biosynthesis protein ribd [Verrucosispora maris AB-18-032] gi|328809959|gb|AEB44131.1| riboflavin biosynthesis protein ribd [Verrucosispora maris AB-18-032] Length = 353 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 115/321 (35%), Positives = 167/321 (52%), Gaps = 26/321 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL +AG A+G Sbjct: 10 MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVALAQAGHRAKG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC+ +++ + RVV+ V DP V+ G L GI VD Sbjct: 70 GTAVVTLEPCDHTGRTGPCSDALVQAQVARVVIAVPDP-TPVAAGGAATLRAAGIRVDLG 128 Query: 128 -RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R E+E G + A+LT ++ K A + D A S+ IT ++ VH Sbjct: 129 VRATEAENGNV---AWLTAMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEAARMDVHA 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 LRA DA++VG+GTVLADDP LT R L P+R+++D + LD++I A Sbjct: 186 LRATVDAVIVGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGRTPLDAQIRDAAAR 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + E + DL LL L +GV ++L+EGG +A +F Sbjct: 246 TWIATAAE--------------VGAGPDGGVDLPALLAALHAKGVRAVLLEGGPKLAGAF 291 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + + LVD ++ Y + ++G G Sbjct: 292 LAAGLVDRVVGYLAPRLLGAG 312 >gi|295135421|ref|YP_003586097.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia profunda SM-A87] gi|294983436|gb|ADF53901.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia profunda SM-A87] Length = 348 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 108/334 (32%), Positives = 178/334 (53%), Gaps = 18/334 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +++ L+ + +G T NP V +IV +IG G G PHAEV A+ Sbjct: 8 KYIKRCLQLAENGLGSTYPNPMVGSVIVYKNQIIGEGWHQKAGEPHAEVNAVNSVKNRDL 67 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + +T YV+LEPCSH+G++PPC+ II GI++VVV DP V+GRG++ L + G V Sbjct: 68 LKKSTIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVVATVDPFAEVAGRGIKKLMEAGCDV 127 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQ 182 ++E E + + T +KR +I LK A S+D I V I+ SK Sbjct: 128 TLGVLEQEAQHLNKRFFTFHNKKRPYIILKWAQSEDGFIAPLQRKDRAPVWISNRYSKQL 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ AILVG T + D+P+L RL ++P+R+++D K+ S I ++ Sbjct: 188 VHKWRAEEQAILVGTKTAIEDNPKLNTRL--YAGNNPVRVVIDRSGKIPAASAIFDGSI- 244 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD-CRDL-KKLLTILVGRGVTSLLVEGGAAVAH 300 II+TEN+ + + KN+ + D ++L +++ +IL + S+++EGG Sbjct: 245 -KTIIITENNQKITS-----KNLEYRHADFSQNLPEQIGSILFQENLQSVIIEGGLQTLQ 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 SFI+++L D ++ + + + G+ +P +G L Sbjct: 299 SFIDAKLWDEARVFSGNVQL-KMGVSAPEFQGKL 331 >gi|146295833|ref|YP_001179604.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409409|gb|ABP66413.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 371 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 163/313 (52%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M AL ++ L NP V +IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMHIALELAKKASPLVLPNPRVGSVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 67 HSLKNSTMYVSLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ ++E E + + +I +K+A S D I V Sbjct: 127 KVVEGILEKEAESVNKEFFKYMKTGIPYIAIKVAQSIDGKIAKPSGERFIFNTEDENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A +V + TV++D+P L R G P+R++LD ++ L+S I+KT+ Sbjct: 187 HSLRQKYMATMVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLESNIVKTSDEY 245 Query: 243 APVIIVTENDDPVLALAF-RKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + + +EN + + F +K I II+ DL L+ L + + S+LVEGG+ Sbjct: 246 STYTVCSENVNDTQKIEFLSQKGIKIIFAKSSEDGHLDLLDALSKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 FLNFSLLKQRIAD 318 >gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces pristinaespiralis ATCC 25486] gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces pristinaespiralis ATCC 25486] Length = 363 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 183/351 (52%), Gaps = 21/351 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ +A M A+ + +G TS NP V C+I G V+G G G PHAE+ AL Sbjct: 3 TAAEADAMRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC+H GR+ PCAQ ++E G+ RVV V DP+ +G G L Sbjct: 63 AGVLARGGTAYVTLEPCNHTGRTGPCAQALVEAGVARVVYAVADPNGEAAG-GADTLRAA 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V++ ++ E +LT R H+T K A + D + A S I+ S+ Sbjct: 122 GIEVEQGLLAEEAAAGNAGWLTSVRLGRPHVTWKYAATLDGRVAAADGTSRWISSPESRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239 VH LRA++DA++VG GT ADDP L R + G + P+R+++D + ++++ Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPHLAVRGVAGATQ--PLRVVIDTEAVAVKPGARVLDD 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVE 293 A AP + D L +I ++ R D+ LL L RGV S+L+E Sbjct: 240 A--APTAVAVAED----VLPDATAHIADVWRLPRASGGGLDVAALLATLHTRGVRSVLLE 293 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 GG +A +F+ + VD +I Y + +++G G P+ L + + +R D Sbjct: 294 GGPTLAGAFVAAGAVDRVIGYLAPVLLGAG--PAALADAGITTITDALRLD 342 >gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 367 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|150003437|ref|YP_001298181.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC 8482] gi|254881264|ref|ZP_05253974.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA] gi|149931861|gb|ABR38559.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC 8482] gi|254834057|gb|EET14366.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA] Length = 350 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 184/350 (52%), Gaps = 19/350 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+G+G++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPYSQVAGKGIEKLRKAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R N +H P+R+++D L D ++ + Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR-NWYGKH-PVRLVIDKELTLPRDLELFNGKI 241 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300 V P + + N +D L +++ +L + + SLLVEGG+ + Sbjct: 242 KTFVFTRESPCQPNALTEYISLDFN------KDILPQIMEVLYQKKIQSLLVEGGSILLQ 295 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI+S L D + ++ + + GI +P ++K + + YFG ++ Sbjct: 296 SFIDSGLWDEAFIEKAPLRLN-NGIQAP----SIQKKHFKLNKIYFGREI 340 >gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bordetella bronchiseptica RB50] gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bordetella bronchiseptica RB50] Length = 374 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 169/322 (52%), Gaps = 14/322 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV AL EA G Sbjct: 1 MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+GL L GI V Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVT 120 Query: 128 RMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + + L+A + R + LK+A S D + S ITG ++ H Sbjct: 121 EDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+S +L G+GTVL DDP+L R +Q H P + ++D F++ D+++ A V Sbjct: 181 RARSGVVLTGMGTVLKDDPQLNAR--AVQTSHPPRKAVIDGRFEIPEDARLFDDG--AQV 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ T D A +N +I D DL ++ L + + + VE GA ++ Sbjct: 237 LVFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSG 296 Query: 301 SFINSRLVDSIILYRSQIVIGE 322 + + VD +++Y + +++G+ Sbjct: 297 ALLAEDCVDELLVYLAPVLLGD 318 >gi|301308353|ref|ZP_07214307.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3] gi|300833823|gb|EFK64439.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3] Length = 359 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 175/326 (53%), Gaps = 19/326 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182 +V +ME E + A++T Q + R +I LK A S+D I S P+T S Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + +I TE + ++N+ I D ++++L L R + SLLVEGGA Sbjct: 243 --FSRTLIFTEKE------VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGGAQ 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 + +SF+ + + D + + + + + +G Sbjct: 295 LINSFVEADVWDEVRVETAPVRLYQG 320 >gi|242243028|ref|ZP_04797473.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis W23144] gi|242233486|gb|EES35798.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis W23144] Length = 343 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 106/314 (33%), Positives = 163/314 (51%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +A+GA Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 61 TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + T + + +T+K++ S D S IT K V+ LR + Sbjct: 119 NENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I TE Sbjct: 179 DAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKTGQLDFNQQIFKDT-ASEIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N+ +F K INI CD +L L RG+ LLVE G + F+ S+ ++ Sbjct: 236 NEKLKTDKSFIKI-INISKCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291 Query: 311 IILYRSQIVIGEGG 324 +ILY + +IG G Sbjct: 292 LILYIAPKLIGGSG 305 >gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter desulfuricans SSM1] gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter desulfuricans SSM1] Length = 384 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 109/320 (34%), Positives = 171/320 (53%), Gaps = 14/320 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M ++ + G T TNP V +IVKDG +IGRG G HAE+ A+ +A E GA Sbjct: 8 MKECVQLALLGKGYTKTNPIVGAIIVKDGKIIGRGYHEEYGKSHAEINAMNDAVEPLEGA 67 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPCS +G++PPC IIE I+RV + V DP+ +++G+G+ L + G+ V Sbjct: 68 DLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVGF 127 Query: 131 ESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + T+ V + + TLK+A S D I S IT S+ VH +R+ Sbjct: 128 DEELCASIIEDFTKGVLNQEPYYTLKLAQSLDGKIATKTGDSKWITSESSRVYVHYIRSV 187 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-----LLAP 244 SDAILVG+ TV D+P L RL E +P +++LDP F++ +S + K L Sbjct: 188 SDAILVGVNTVNRDNPRLDVRLIK-AEVNPYKVVLDPFFEIDTNSFLCKNYSNKLILFVK 246 Query: 245 VIIVTENDDPVLALA---FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I E D +++ + ++I ++ DL + L + + ++L+EGG+ A Sbjct: 247 DIKSKEKYDKLISEGVEIVKDESIGELF----DLNFISKYLYSKNILNVLIEGGSETAGR 302 Query: 302 FINSRLVDSIILYRSQIVIG 321 FI++ VD ++ + + +IG Sbjct: 303 FIDAGKVDKVLFFIAPKIIG 322 >gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50] gi|156863153|gb|EDO56584.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50] Length = 336 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 166/338 (49%), Gaps = 22/338 (6%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 +IVKDG +IG G G HAE A E+A GA YVTLEPC HYG+ PPC II Sbjct: 1 MIVKDGRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAII 60 Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152 E I RV V DDP+ VSG+G Q L GI ++ +++ E + V K ++ Sbjct: 61 EHKISRVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEECDSLNPVFFHYIVNKTPYV 120 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 +K A++ D I S ITG ++ V R I+VG TV+ DDP LTCR Sbjct: 121 VMKYAMTMDGKIATYSGKSKWITGEEARAHVMEQRNALTGIMVGSETVIKDDPALTCRRA 180 Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYC 270 G + +P+RII D ++ +DS+I++TA P I+ T D + II Sbjct: 181 GGR--NPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQTDKKQKLIGAGVEIIET 238 Query: 271 DC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323 + DL++L+ L R + +L+EGG + S + + +V + +Y + + G Sbjct: 239 ENVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVKEVDVYIAPKIFGGSAGY 298 Query: 324 ------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 G+ SP EE Y F FG+D+ L+Y Sbjct: 299 TPVGGMGVESP-EEAY---PFELGSVQRFGADIMLQYF 332 >gi|296117961|ref|ZP_06836544.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes DSM 20306] gi|295969192|gb|EFG82434.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes DSM 20306] Length = 355 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 115/309 (37%), Positives = 158/309 (51%), Gaps = 31/309 (10%) Query: 20 WHV-GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 W V G TS NP V ++V G ++G G T G HAEVQAL EA GATA VTLE Sbjct: 27 WEVRGTTSPNPPVGAVMVSTAGEIVGTGATQPAGGAHAEVQALAEAVGRTDGATAVVTLE 86 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KI 136 PC H GR+ PC Q +IE GI+ V DP+ G G + L + G+ V ++ EG Sbjct: 87 PCRHTGRTGPCTQALIEAGIQEVYYLHSDPNPEAGG-GAEALREAGVNVTQLSAPEGMPD 145 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L +L R H+TLK A + D A S ITG +++ VH RA DAI++G Sbjct: 146 ALIPWLKSVQLGRPHVTLKFAQTIDGFTAAADGTSQWITGEMARQYVHEDRAHRDAIIIG 205 Query: 197 IGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 GT L D+P LT R +G Q EH P R+++ +L+ V EN Sbjct: 206 TGTALTDNPSLTARFPDGSQREHQPRRVVIG-RRRLA---------------DVGENASN 249 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + L F + Y + + L L G +LVEGGA +A F+N+ LVD + +Y Sbjct: 250 LNRLGFEQ------YAK---IDEALQELYASGARDVLVEGGAGLASGFMNAGLVDWVQVY 300 Query: 315 RSQIVIGEG 323 ++ +++GEG Sbjct: 301 QAPLLLGEG 309 >gi|16763796|ref|NP_459411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615396|ref|YP_001589361.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167992266|ref|ZP_02573364.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168240239|ref|ZP_02665171.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194442362|ref|YP_002039658.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449088|ref|YP_002044451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264648|ref|ZP_03164722.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|224582254|ref|YP_002636052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|16418920|gb|AAL19370.1| pyrimidine deaminase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161364760|gb|ABX68528.1| hypothetical protein SPAB_03167 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401025|gb|ACF61247.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407392|gb|ACF67611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242903|gb|EDY25523.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329484|gb|EDZ16248.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339872|gb|EDZ26636.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224466781|gb|ACN44611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245699|emb|CBG23495.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992127|gb|ACY87012.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157027|emb|CBW16510.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911449|dbj|BAJ35423.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225143|gb|EFX50204.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128735|gb|ADX16165.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987364|gb|AEF06347.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 367 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|148555358|ref|YP_001262940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingomonas wittichii RW1] gi|148500548|gb|ABQ68802.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingomonas wittichii RW1] Length = 313 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 97/204 (47%), Positives = 127/204 (62%), Gaps = 3/204 (1%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G T+ NP+V C+IV+DG VIGRG T GG PHAE A+E AG+ A GAT YVTLEPC+H Sbjct: 13 GRTAPNPNVGCVIVRDGRVIGRGWTGAGGRPHAEAIAIEAAGDLA-GATLYVTLEPCAHV 71 Query: 83 -GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHA 140 R P CA I+ RVV+ + DPD R GRG+ ++ GI V +E+E + + Sbjct: 72 SARGPACADLIVAAKPARVVIALRDPDPRTDGRGIARITAAGIAVATGVEAEAARASMAG 131 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +LTR+ + R H+TLK+A S D I + S ITG ++ HL RA+ + ILVG GT+ Sbjct: 132 FLTRRSKGRPHVTLKLATSLDGRIALPDRSSRWITGPAARAHAHLERARHEMILVGRGTL 191 Query: 201 LADDPELTCRLNGLQEHSPMRIIL 224 AD P L RL GL+E SP R +L Sbjct: 192 EADSPGLDVRLPGLEERSPRRAVL 215 >gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Crocosphaera watsonii WH 8501] gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Crocosphaera watsonii WH 8501] Length = 348 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 101/313 (32%), Positives = 167/313 (53%), Gaps = 5/313 (1%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 + NP V ++VK+G +IG G G PHAEV AL +AGE A G T YV LEPC+HYGR+ Sbjct: 8 NPNPMVGAVVVKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCNHYGRT 67 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144 PPC + +I + +VVV + DP+ VSG+GL L GI ++ + E+ + A+ R Sbjct: 68 PPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEVIVGVEETACRRLNEAFCHR 127 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 + + LK A++ D I + S +TG S+ VH RA DA++VG TV D+ Sbjct: 128 ILHHQCFGILKYAMTLDGKIATSTGHSAWVTGTTSRQLVHQTRAGCDAVIVGGNTVRRDN 187 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKK 263 P LT ++ +P+R+++ + L ++ + +AP ++ TE +P L R K Sbjct: 188 PHLT--IHQATGRNPLRVVMSRNLHLPQEANLWDVQ-VAPTLVFTEWGKNPSLQAELRSK 244 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + ++ +++ +L R ++S+L E G + I ++ ++ + + +IG Sbjct: 245 GVEVLELSPLSPAQVMEVLYERQLSSILWECGGVLGAQAIREGVIQKVMAFMAPKIIGGV 304 Query: 324 GIPSPLEEGYLEK 336 SP+ + LEK Sbjct: 305 SAASPVGDLGLEK 317 >gi|256827880|ref|YP_003156608.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum DSM 4028] gi|256577056|gb|ACU88192.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum DSM 4028] Length = 374 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 167/335 (49%), Gaps = 24/335 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D FM A+R + G T+ NP V ++ + G V+ G G PHAEV+AL +A Sbjct: 4 DCAFMDQAIRLAEQGRGRTAPNPCVGAVLTRGGEVVAEGWHTACGQPHAEVEALRDAQAK 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RG T YVTLEPC+H G++PPC + I+E G+ VVV DP+ V+G G +L +G Sbjct: 64 GVDPRGCTLYVTLEPCNHQGKTPPCTRAILEAGVPEVVVGCADPNPTVAGGGADFLRGRG 123 Query: 124 IIVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + V RM E E + + +L Q R + LK+A + D I + I+G S+ Sbjct: 124 VTV-RMGVREQECRDLIADFLVWQTTARPYSILKLATTLDGKIATRDGQAAWISGEASRR 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL-----DPHFKLSLDSKI 236 +VH LR A++VG GT AD+P LTCRL G P+ +I+ DP + DS + Sbjct: 183 EVHRLRTWCQAVIVGGGTFRADNPSLTCRLPGYDGPQPLAVIVSRSLPDP----AQDSNL 238 Query: 237 IKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDC-------RDLKKLLTIL-VGRGV 287 + T + TE + A + + + C DL L +L RG Sbjct: 239 LSTRPDQIIFWTTEAQSRSIRATRLTELGVTVWGLPCLKTPAETLDLNAGLQLLRKDRGC 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 L EGG +A S LVD + ++++ V+G+ Sbjct: 299 HYTLTEGGGHLAGSMQRQGLVDELRIFQAMKVLGD 333 >gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 367 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|322614696|gb|EFY11625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618802|gb|EFY15690.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623509|gb|EFY20348.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629193|gb|EFY25972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631913|gb|EFY28667.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637350|gb|EFY34052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642035|gb|EFY38645.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647854|gb|EFY44329.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652532|gb|EFY48886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653306|gb|EFY49639.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660545|gb|EFY56781.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664697|gb|EFY60890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669250|gb|EFY65400.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670795|gb|EFY66928.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678966|gb|EFY75021.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681994|gb|EFY78019.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685177|gb|EFY81174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194475|gb|EFZ79670.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196988|gb|EFZ82130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203973|gb|EFZ88990.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206942|gb|EFZ91895.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210840|gb|EFZ95712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214531|gb|EFZ99282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223088|gb|EGA07431.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227037|gb|EGA11218.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230145|gb|EGA14265.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233883|gb|EGA17972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238423|gb|EGA22481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244111|gb|EGA28120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246271|gb|EGA30254.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251897|gb|EGA35760.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257894|gb|EGA41573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261093|gb|EGA44685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264977|gb|EGA48476.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272540|gb|EGA55947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 367 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|238911451|ref|ZP_04655288.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 367 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPTH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|94265528|ref|ZP_01289276.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] gi|93453969|gb|EAT04315.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] Length = 374 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 189/372 (50%), Gaps = 22/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GAT YVTLEPC+H+GR+PPC++ II GIRRVV + DP G G + L Sbjct: 61 AGEAAAGATIYVTLEPCNHHGRTPPCSEAIIAAGIRRVVYGLADPHEVARG-GAKRLESA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++ E + ++ R R + LK AVS D I A S ITG ++ Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKII-KT 239 H LR QSDAILVG GTVLADDP LT RL G + P+R++LD + ++++ + Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLSQQ 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILVGR 285 + A I A A ++ + DL ++L L Sbjct: 240 SPAATWIFCAPEAATERAAALEAAGARVVRLEPTPGGQSGLEPNFSGLDLWQVLRELAAN 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341 GV LLVEGG V SF+ L D + + ++IG G+P +PL ++K V Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359 Query: 342 RRDYFGSDVCLE 353 G D+ L Sbjct: 360 SSRRLGDDIMLR 371 >gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Bacteriovorax marinus SJ] Length = 378 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 110/329 (33%), Positives = 164/329 (49%), Gaps = 12/329 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ G+TS NP V +IV+D I+IG G G PHAE A+ A E Sbjct: 6 DEQYIRRCFALAKKATGMTSPNPLVGSVIVQDNIIIGEGYHQRYGEPHAEPNAINNAVEP 65 Query: 67 ARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 GAT Y LEPC H + +PPC IIE I+RVV+ DP+ V+G G++ L + GI Sbjct: 66 VEGATLYCNLEPCCHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKLREAGIA 125 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++E EG+ + ++ + +K+A + D I S I+ +++ +VH Sbjct: 126 VSVGVLEEEGRELNEVFFKYITTQKPFVHIKLAQTLDGKIATDSGDSKWISSELARERVH 185 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLA 243 R + DA+L+G T+ DDP L R+ E P RIIL KLS + K+ + A Sbjct: 186 QWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHPFRIILCSVDKLSTEFKVFNDSASA 245 Query: 244 PVIIVTEND-----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 II+T + F K + II D DL LL L ++S+LVEG Sbjct: 246 KTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKEDSFDLNDLLLKLGALKISSILVEG 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G +V +FI+ D + L+ +IG G Sbjct: 306 GQSVITAFIDQVEYDKLSLFICPKIIGNG 334 >gi|168237529|ref|ZP_02662587.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734520|ref|YP_002113449.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710022|gb|ACF89243.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289553|gb|EDY28916.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 367 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|319892826|ref|YP_004149701.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Staphylococcus pseudintermedius HKU10-03] gi|317162522|gb|ADV06065.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Staphylococcus pseudintermedius HKU10-03] gi|323464142|gb|ADX76295.1| riboflavin specific deaminase [Staphylococcus pseudintermedius ED99] Length = 348 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 10/318 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EEA 67 ++ A++ + G T TNP+V +IVK G +IG G G HAE+QA++ AG + Sbjct: 3 HYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAKHV 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPCSHYG +PPCAQ II+ GI +VV D ++ + + + Q GI V+ Sbjct: 63 KGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAAKDTTLQETSHDV--MVQHGIEVE 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + A+ + +T+K++ S D S IT K V LR Sbjct: 121 YRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATDHFESQWITSKQVKADVFQLR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DAI+ G GT+ D+P LT R+ H P ++IL K++ D+++ + + P+ I Sbjct: 181 HSHDAIITGNGTLTHDNPSLTTRVE--DGHHPAKVILSRSGKINWDAQLFQDH-VTPIYI 237 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN AL ++ II ++ +L L +G +LVE G V F+ SRL Sbjct: 238 YTENQ----ALTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRL 293 Query: 308 VDSIILYRSQIVIGEGGI 325 V ILY + +IG G+ Sbjct: 294 VTHFILYLAPKIIGGQGV 311 >gi|168261151|ref|ZP_02683124.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350075|gb|EDZ36706.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 367 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|16759393|ref|NP_455010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142835|ref|NP_806177.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213427850|ref|ZP_03360600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650168|ref|ZP_03380221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855380|ref|ZP_03383620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825059|ref|ZP_06544411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331497|pir||AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501684|emb|CAD08872.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhi] gi|29138467|gb|AAO70037.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 367 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|271964337|ref|YP_003338533.1| diaminohydroxyphosphoribosylaminopyrimidinedeami nase [Streptosporangium roseum DSM 43021] gi|270507512|gb|ACZ85790.1| Diaminohydroxyphosphoribosylaminopyrimidinedeami nase [Streptosporangium roseum DSM 43021] Length = 388 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 167/342 (48%), Gaps = 41/342 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M A+ + G TS NP V C+++ G V+G G AY G PHAEV AL AGE Sbjct: 3 DQAHMRRAIELAARGRGTTSPNPVVGCVVLDAAGQVVGEGFHAYAGGPHAEVVALRAAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARG TAYVTLEPC H GR+ PCA ++E GI RVVV V DP+ +G G L++ G+ Sbjct: 63 RARGGTAYVTLEPCDHTGRTGPCALALLEAGIARVVVAVRDPNPAAAG-GADRLTRHGVA 121 Query: 126 VDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E G+ +LT R H+T K A + D A S IT S+ V Sbjct: 122 VTTGVLAEEAGRGNAE-WLTSVRLGRPHVTWKYAATLDGRSAAADGTSQWITSPESRADV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHS-------------- 218 H LR ++DAI+ GIGTVLADD LT R +GL + + Sbjct: 181 HRLRGEADAIIAGIGTVLADDARLTVRRPAADGAPAGVDSGLPDGAATARPLAQGAPATR 240 Query: 219 -PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---- 273 P+R+++D + L ++++ AP ++ + ++ R Sbjct: 241 PPLRVVVDSDARTPLTARVLDG--RAPTLVAVAD---DADADALAAGAEVVRLARRRPYG 295 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 DL LL L R + +L+EGG +A SF+ L+D ++ Y Sbjct: 296 LDLAGLLAELHRRQIVGVLLEGGPTLAGSFLKEGLIDRVVGY 337 >gi|167551773|ref|ZP_02345526.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323400|gb|EDZ11239.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 367 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D + R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQGDSRAWPDSVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|325299195|ref|YP_004259112.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM 18170] gi|324318748|gb|ADY36639.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM 18170] Length = 356 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 115/338 (34%), Positives = 173/338 (51%), Gaps = 21/338 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S ++ ++ + T NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCIQLAKNGLCNTPPNPMVGAVIVYQDRIIGEGYHIRCGEGHAEVNAIASVKDE 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + R +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L G+ Sbjct: 64 SLLRQSTLYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCTDPFPLVSGRGIQKLRDAGV 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E K + ++T +++R +ITLK A S D I + P+ + ++ Sbjct: 124 EVKVGVLEQECKDLIRRFVTFNLKQRPYITLKWAQSADGFIDVLRQEGTPVKLSSPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ AILVG T L D+P LT R +P+R+++D L ++ + Sbjct: 184 YVHKLRAEHQAILVGRKTALLDNPSLTVR--EWYGKNPLRLVIDRDLSLPASLRLFDGS- 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P + T + + N+ + D L ++ L V SLLVEGG+ + Sbjct: 241 -TPTWVFTSKE------KASRPNLTYVRLDFGQDILPQIAQALCENKVQSLLVEGGSTLL 293 Query: 300 HSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGY 333 SFI+ + D I + V+G+G IPS + GY Sbjct: 294 QSFIDRGMWDEIYAEHTSAVLGKGVPAPAIPSGIPVGY 331 >gi|56414429|ref|YP_151504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168818973|ref|ZP_02830973.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197363349|ref|YP_002142986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389971|ref|ZP_03216582.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|56128686|gb|AAV78192.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094826|emb|CAR60359.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|199602416|gb|EDZ00962.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205344221|gb|EDZ30985.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084692|emb|CBY94483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 367 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|124010107|ref|ZP_01694767.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC 23134] gi|123983875|gb|EAY24280.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC 23134] Length = 355 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 103/332 (31%), Positives = 167/332 (50%), Gaps = 14/332 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM AL + G S NP V C+IV +IG G + G HAEV A+ + Sbjct: 14 DEKFMQRALDLAVLGAGKVSPNPMVGCVIVHQEQIIGEGWHQFYGKAHAEVNAVNAVENK 73 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A AT YVTLEPC+H G++PPCA +I+ ++RVVVC DP V G+GL+ L GI Sbjct: 74 ALLSEATVYVTLEPCAHQGKTPPCADLLIKHQVKRVVVCNQDPHPLVGGKGLEKLRTAGI 133 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E++GK + T +++R ++ K A + D I S I+ +S+ V Sbjct: 134 EVTVGILEAQGKEVNKRFFTGLLKQRPYVIFKWAETADGFIARKNYESKWISNKMSRMLV 193 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + D+I+VG T D+P+L RL + +P R+++D KL + + L Sbjct: 194 HKWRTEEDSIMVGSNTARYDNPQLNARL--WKGRNPARVVIDRRLKLPSNLHLYNQQQLT 251 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + N+ + D + L+++L L + + S++VEGG+ + + Sbjct: 252 FIYNQLSRS--------QASNLEFVKLDEDKFLEEVLLDLYEKKIRSVIVEGGSTLINLL 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 I + D +++S + GI +P G+L Sbjct: 304 IEQNMWDEARVFKSTQTVFHEGIKAPKVHGHL 335 >gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CB0101] Length = 359 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 119/356 (33%), Positives = 188/356 (52%), Gaps = 19/356 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V C+++ + G ++G G G PHAEV AL +AGE AR Sbjct: 8 WMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALRQAGERAR 67 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G TA VTLEPC H+GR+PPC++ ++ G+ RVVV + DPD RV+G+GL L G+ +++ Sbjct: 68 GGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRDAGVDVLE 127 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+E +I +L R + R LK A+S D + S I+G ++ VH LR Sbjct: 128 GVCEAEARILNRGFLHRVEQGRPLGLLKWAMSLDGRTALPNGSSQWISGPPARAWVHHLR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 AQ DA++VG GTV AD+P LT R G + P+R+++ L +++ + A +++ Sbjct: 188 AQCDAVIVGGGTVRADNPLLTSR--GQRTPEPLRVVISRSLDLPKQAQLWNQSEAATLVV 245 Query: 248 VT-----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + E D + L + ++ C L +LL L RG +L E G +A + Sbjct: 246 HSSSAPAEQLDRLDGLGVER----LVLERCEPL-ELLEALGQRGCNQVLWECGPELAAAA 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLE 353 + V + + ++G +PL + G ++ N + R G+D LE Sbjct: 301 LRQGCVQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSRLQQLGNDCLLE 356 >gi|312794193|ref|YP_004027116.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181333|gb|ADQ41503.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 371 Score = 162 bits (411), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q L Q GI Sbjct: 67 YLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ +++ E + + + + +K+A S D I + V Sbjct: 127 EVVEGVLQKEAESINKDFFKYMKKGIPYTAIKVAQSIDGKIATPSNKRFLFSTEEENLFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GEIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D +K I II+ DL + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 LLNFSLLKQRIAD 318 >gi|168232389|ref|ZP_02657447.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470692|ref|ZP_03076676.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457056|gb|EDX45895.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333401|gb|EDZ20165.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 367 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSGATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPTH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|270284895|ref|ZP_06194289.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] gi|270288923|ref|ZP_06195225.1| riboflavin-specific deaminase [Chlamydia muridarum Weiss] gi|13633863|sp|Q9PLJ6|RIBD_CHLMU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase Length = 371 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G +IGRG G PHAEV A ++ G Sbjct: 11 FMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQDQTSSLVG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 A YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L + GI V Sbjct: 71 ADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E K L YL ++ + +K A S D S I+G ++ V LRA Sbjct: 131 IGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S A++VG TV D+P L+ R+ L E P+R+++D + LD+++ ++ Sbjct: 191 ESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLL 250 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 TE + + + + DLK+LL L +G +LVEGGA + +F Sbjct: 251 ATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWR 310 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 LV++ ++Y +G+ G P Sbjct: 311 EHLVNAGVIYWGPKFLGDQGSP 332 >gi|332299428|ref|YP_004441349.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica DSM 20707] gi|332176491|gb|AEE12181.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica DSM 20707] Length = 343 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 119/349 (34%), Positives = 175/349 (50%), Gaps = 31/349 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 8 TSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRS 67 Query: 63 AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 EE R AT YV+LEPC+HYG++PPCA+ + + RVV+ + DP +V GRG+ Sbjct: 68 VPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAKLRPARVVIAMLDPFAKVDGRGVAR 127 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVP 173 L + GI V +E E +L Q R ++TLK A S D+ I A Sbjct: 128 LREAGIEVSIGCLEQEAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYT 187 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIIL------DP 226 + + + VH LR+ DAILVG T DDP LT R +G Q P+R++ P Sbjct: 188 FSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQ---PIRLLWCHSRLPRP 244 Query: 227 HFKLSLDSKIIKTALLAPVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 ++ D+ LL P ++ VT+ P +++ + +++ LLT+L Sbjct: 245 ELRMLQDASAPTILLLPPALLEQVTDGQYP--------PHVSCL-ATTGEVRDLLTLLHS 295 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 +G+ SLLVEGGA V F+++ L D I + + + + E G+P+P E + Sbjct: 296 QGIESLLVEGGAQVQQRFLDAGLYDEINVEHAPVELHE-GVPAPHLERW 343 >gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10] gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC] gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1] gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC] gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10] gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC] Length = 368 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 106/328 (32%), Positives = 167/328 (50%), Gaps = 16/328 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ + NP V C+IVK+G +IG G G PHAE +A+ A E G Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRSASESIEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128 + YVTLEPC HYG +PPC +I+ + V V + DPD RVSGRG+ L + GI V + Sbjct: 71 SEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKAGICVYEG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + E + L +YL ++ + + +K A + D + S IT ++ V LRA Sbjct: 131 LGKEEAERSLKSYLYQRTHGKPWVVIKSAATLDGQVADKDGQSQWITCPEARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 S AI+VG TVL D+P LT R L P+R+++D + ++ I + + + Sbjct: 191 CSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRVVVDSKGVIPPEANIFHSTGKSLYV 250 Query: 247 IVTENDDPVLALAFRKK----NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 ++ RKK ++++ + +D L +L+T L +LVEGGA + Sbjct: 251 TTAQSSK-----DHRKKIEDLGVDLLVTESKDSKVNLHELMTYLSTTHTLQVLVEGGAVL 305 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP 326 SF+ RL ++++LY ++G+ P Sbjct: 306 HTSFLKERLANTLVLYLGPKILGDQRKP 333 >gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 367 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 190/370 (51%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAY 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|256839100|ref|ZP_05544610.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13] gi|256740019|gb|EEU53343.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13] Length = 359 Score = 162 bits (411), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 108/312 (34%), Positives = 168/312 (53%), Gaps = 19/312 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182 +V +ME E + A++T Q + R +I LK A S+D I S P+T S Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + +I TE + ++N+ I D ++++L L R + SLLVEGGA Sbjct: 243 --FSRTLIFTEKE------VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGGAQ 294 Query: 298 VAHSFINSRLVD 309 + +SF+ + + D Sbjct: 295 LINSFVEADVWD 306 >gi|293366290|ref|ZP_06612971.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis M23864:W2(grey)] gi|291319592|gb|EFE59957.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis M23864:W2(grey)] Length = 343 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 105/314 (33%), Positives = 161/314 (51%), Gaps = 9/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +GA Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 61 TIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + T + + +T+K++ S D S IT K V+ LR + Sbjct: 119 NENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA++ G T+ AD+P T R+ + P+R+IL +L + +I K + + I TE Sbjct: 179 DAVITGRRTIEADNPLYTTRVPDGKH--PIRVILSKKGQLDFNQQIFKDT-ASEIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N+ +F K INI CD +L L RG+ LLVE G + F+ S+ ++ Sbjct: 236 NEKLKTNKSFIKI-INISNCDTT---TILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291 Query: 311 IILYRSQIVIGEGG 324 +ILY + +IG G Sbjct: 292 LILYIAPKLIGGSG 305 >gi|120403674|ref|YP_953503.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii PYR-1] gi|119956492|gb|ABM13497.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 112/316 (35%), Positives = 163/316 (51%), Gaps = 33/316 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+AA+ S G T NP V +I+ +DG + G G TA G PHAEV AL AGE A G Sbjct: 7 MAAAIEQSERVKGRTYPNPPVGAVILDRDGEIAGVGATAPPGGPHAEVVALRRAGERAVG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H+GR+PPC +++ GI V V DPD +G G L++ G+ V Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALLDAGIAEVAFAVADPDPVAAG-GAARLAESGVRVSAG 125 Query: 130 MESEGKIF--LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + L +L +Q H+T K A S D A S IT ++ VH R Sbjct: 126 VLAADVTGGPLREWLHKQRTGMPHVTWKFATSVDGRSAAADGSSQWITSEAARADVHRRR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 A +DAI+VG GTV DDP LT RL L +H P+R+++ ++S D+ ++ Sbjct: 186 ATADAIIVGTGTVFVDDPALTARLPDGSLADHQPLRVVVGKR-EISPDATVL-------- 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 NDD + R N + +++ L R T + VEGG +A +F+ + Sbjct: 237 -----NDD-SRTMVIRTHNPH----------EVIKALADR--TDVFVEGGPTLAGAFLRA 278 Query: 306 RLVDSIILYRSQIVIG 321 ++D I+ Y + I++G Sbjct: 279 GVIDRILAYVAPILLG 294 >gi|15834728|ref|NP_296487.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] gi|7190138|gb|AAF38983.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] Length = 396 Score = 162 bits (410), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 159/322 (49%), Gaps = 5/322 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G +IGRG G PHAEV A ++ G Sbjct: 36 FMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQDQTSSLVG 95 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 A YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L + GI V Sbjct: 96 ADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVG 155 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E K L YL ++ + +K A S D S I+G ++ V LRA Sbjct: 156 IGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRA 215 Query: 189 QSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S A++VG TV D+P L+ R+ L E P+R+++D + LD+++ ++ Sbjct: 216 ESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLL 275 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 TE + + + + DLK+LL L +G +LVEGGA + +F Sbjct: 276 ATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWR 335 Query: 305 SRLVDSIILYRSQIVIGEGGIP 326 LV++ ++Y +G+ G P Sbjct: 336 EHLVNAGVIYWGPKFLGDQGSP 357 >gi|111024118|ref|YP_707090.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1] gi|110823648|gb|ABG98932.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1] Length = 350 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 162/306 (52%), Gaps = 33/306 (10%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP+V +++ G + G G+T G PHAEV AL EAG+ ARG TA VTLEPC+H Sbjct: 26 GFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARGGTAVVTLEPCNH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139 +GR+ PC+Q +++ G+ V V DP+ +G G + L G+ V + ++ + L Sbjct: 86 HGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAETLISAGVEVTSGLRAQDVERGPLR 144 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+L RQ R H+T K A + D A S ITG ++ +VH RA+ DAI+VG GT Sbjct: 145 AWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGT 204 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 VLADDP LT R+ L H P+R+++ + D++++ DD Sbjct: 205 VLADDPRLTARMPDGSLAAHQPVRVVVG-LGDIPADARVL--------------DDSAPT 249 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 L R +++ + + T +L+EGG +A +F+ + VD I Y + Sbjct: 250 LLLRTHDVDEVLAALAEY------------TDVLLEGGPRLAGAFLAAGRVDRIQAYLAP 297 Query: 318 IVIGEG 323 +++G G Sbjct: 298 LILGAG 303 >gi|312869208|ref|ZP_07729380.1| riboflavin biosynthesis protein RibD [Lactobacillus oris PB013-T2-3] gi|311095229|gb|EFQ53501.1| riboflavin biosynthesis protein RibD [Lactobacillus oris PB013-T2-3] Length = 352 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 172/347 (49%), Gaps = 29/347 (8%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83 T NP V ++VK+G V+ G T G PHAE AL + A +A GAT YVTLEPC+HYG Sbjct: 21 TWRNPGVGAVVVKNGHVLATGHTQPYGGPHAERDALSQLAPGQAAGATLYVTLEPCNHYG 80 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 + PPC Q II+ GI+RVV+ DP V+G+G+ L GI +V + + Y Sbjct: 81 KQPPCTQLIIDSGIQRVVIAQLDPHALVTGKGVAALRHHGIEVVTGIGTQQAAQVNPHYN 140 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +TLK AVS D I IT +VH RA I++G T + Sbjct: 141 FFYRHHRPWVTLKQAVSLDGRISAGPGQRTAITNQAVYQRVHQERAGFQGIVIGSTTAIV 200 Query: 203 DDPEL--TCRLNGLQEHSPMRIILDPHFKLS--LDSKIIKTALLAPVIIVTENDDPVLAL 258 DDP L T +L H P+R++LD +L+ D ++ + LAP + TE L Sbjct: 201 DDPTLVPTPQLT----HLPIRVVLDRRGRLADYPDRQLFRDG-LAPTWVFTERKS--LPD 253 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + + DC + ++ +L GV SL VEGG + ++F + LV+ ++ Y S + Sbjct: 254 RLGPRAWVFVLPDC-SVPAVVQVLAEEGVQSLYVEGGPTIQNAFARAGLVEEVLTYLSPV 312 Query: 319 VIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 ++G+ G+P +P E + D LE +G N+ + E Sbjct: 313 MLGQEGVPGFAPPETWKFQ-------------DQQLELLGNNVRIAE 346 >gi|261749554|ref|YP_003257240.1| riboflavin biosynthesis protein RibD [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497647|gb|ACX84097.1| riboflavin biosynthesis protein RibD [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 347 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 109/344 (31%), Positives = 172/344 (50%), Gaps = 20/344 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 FM A++ ++ +GLTS NP V CLI ++G+++ G G HAEV A+ + Sbjct: 7 FMYRAIQLAKNGLGLTSPNPMVGCLIERNGLILSEGWHYKVGMDHAEVNAINRVENTSLL 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H+G++PPC II+ I RVV+ + DP +V+G G+Q L + GI ++ Sbjct: 67 TDSTLYVTLEPCVHFGKTPPCVDLIIKSKIPRVVIGIQDPCHKVNGLGIQKLRENGIEVI 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQ 182 + ++ + +I + T +KR +I LK A S D + I+G S+ Sbjct: 127 ENVLRDQCRILNKRFFTFYEKKRPYIILKWAQSDDGFMDSLKRNEKKKPSWISGIYSRQL 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H R++ D+ILVG TV D+P+L R P+RI +D KLS+ + Sbjct: 187 SHKWRSEEDSILVGRKTVFNDNPKLDVR--EWFGSDPIRIFMDR--KLSISASYFILDGT 242 Query: 243 APVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+ TE +KN I D +K + L + + SL+VEGG Sbjct: 243 KKTIVFTEKKKE------NQKNTEFVQISFDKEIIKNIFNYLYQKNILSLIVEGGRMTLE 296 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 SFI + + D ++ I + + G+ +P+ +G + KN RD Sbjct: 297 SFIKANIWDESRIFICNIFLKD-GLKAPVIDGRVIKNMYIGERD 339 >gi|226366358|ref|YP_002784141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus opacus B4] gi|226244848|dbj|BAH55196.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus opacus B4] Length = 354 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 161/306 (52%), Gaps = 33/306 (10%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP+V +++ G + G G+T G PHAEV AL EAG+ ARG TA VTLEPC+H Sbjct: 30 GFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVALREAGDAARGGTAVVTLEPCNH 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139 +GR+ PC+Q +++ G+ V V DP+ +G G + L G+ V + ++ + L Sbjct: 90 HGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAEALVSAGVEVTSGLRADDVERGPLR 148 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+L RQ R H+T K A + D A S ITG ++ +VH RA+ DAI+VG GT Sbjct: 149 AWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPEARERVHADRAKLDAIVVGTGT 208 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 VLADDP LT R L H P+R+ ++ + P V ++ P L Sbjct: 209 VLADDPRLTARTPDGSLAAHQPVRV-------------VVGLGDIPPGARVLDDSAPTLR 255 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 L RD+ ++L L T +L+EGG +A +F+ + VD I Y + Sbjct: 256 L------------RTRDVDEVLAAL--SEYTDVLLEGGPRLAGAFLAAGRVDRIQAYLAP 301 Query: 318 IVIGEG 323 +++G G Sbjct: 302 LILGAG 307 >gi|168465506|ref|ZP_02699388.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631795|gb|EDX50315.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 367 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEVEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|327538743|gb|EGF25393.1| riboflavin biosynthesis protein RibD [Rhodopirellula baltica WH47] Length = 394 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 194/384 (50%), Gaps = 37/384 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ A+ + G NP V C++V+D + IG+G G PHAEV+AL Sbjct: 13 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCVLVRDSVCIGKGYHQRFGGPHAEVEALSSC 72 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G Sbjct: 73 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 131 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + + G+ L AYL R + K A+S D I S ITG S+ Sbjct: 132 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------------MRIILDPHFK 229 VH LRA DAI VG+GTV+AD+P LT RL+ L + S +R++ Sbjct: 192 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTNTEDRSNQLVRLVYSRSRL 251 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNINIIYCDCRDLKKLLT---IL 282 L S++++TA P ++ P +A A ++ C+ D +++ + Sbjct: 252 PDLQSQLVQTASQTPTWLIA---GPQIANADLARLADHDVETWQCESADPIEMVQQSLLW 308 Query: 283 VG-----RG--VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 +G RG +T L+VEGG+ + SF + +D + + + IG P PL + ++ Sbjct: 309 LGSKDNPRGLEMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGSCIGGRSAPGPLGDPGIK 368 Query: 336 -----KNFMCVRRDYFGSDVCLEY 354 + R D F +DV L Y Sbjct: 369 ALSDATSLRMSRVDSFDNDVRLIY 392 >gi|300087628|ref|YP_003758150.1| riboflavin biosynthesis protein RibD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527361|gb|ADJ25829.1| riboflavin biosynthesis protein RibD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 362 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 111/329 (33%), Positives = 171/329 (51%), Gaps = 22/329 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ + +G S NP+V ++VKD ++G+G T G HAEV AL +AG ++GA Sbjct: 1 MQQALKLAGLALGEVSPNPAVGAVVVKDDEIVGQGYTQPPGQEHAEVMALNQAGARSQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPC+H GR+PPC II GI+ V D + V G+G L+ GI V Sbjct: 61 VMYVTLEPCAHQGRTPPCTDAIIAAGIKEVHFATLDDNPVVFGKGKAALTAAGIEVHVGE 120 Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + L+ AY +T K A+S D I S I+ S+ H LR + Sbjct: 121 HRDAARELNEAYFKYINTGLPFVTAKFAMSLDGKIATRTGDSKWISNDESRAFAHSLRHE 180 Query: 190 SDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKII-----KTA 240 +DAI+ G+GTV+AD+P+LT R G P+RI++D H + + D+ ++ +T Sbjct: 181 ADAIMAGVGTVIADNPKLTARCCAGSGGTSHKQPLRIVVDSHGR-TPDTAVLFHEPGRTI 239 Query: 241 LLAPVIIVTENDDPVLAL-----AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 L + E P +F N + DL L++ L + +TS++VEGG Sbjct: 240 LAFGGQVSEERRIPYTQAGAELESFPDGNGRV------DLPALMSFLGKQQITSVIVEGG 293 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG 324 +++ S ++ LVD +I++ + ++IG GG Sbjct: 294 SSLLGSMFDAGLVDKVIVFIAPMIIGGGG 322 >gi|62179027|ref|YP_215444.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126660|gb|AAX64363.1| pyrimidine deaminase/reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713488|gb|EFZ05059.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 367 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+G++PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGQTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 243 RIVQQPGET-WIARTQEDSRAWPDAVRTISVP-AHNGHLDLVVLMMQLGRQQINSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYI 355 VCL + Sbjct: 360 VCLHMV 365 >gi|331697233|ref|YP_004333472.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans CB1190] gi|326951922|gb|AEA25619.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans CB1190] Length = 385 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 151/309 (48%), Gaps = 39/309 (12%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C+++ +DG V G G TA G PHAEV AL EAGE ARG TA VTLEPC+H Sbjct: 37 GTTSPNPPVGCVVLDRDGRVAGTGATAPPGGPHAEVAALAEAGERARGGTAVVTLEPCAH 96 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--IIVDRMMESEGKIFLH 139 +GR+PPC + GI V V DP+ +G G L G + V + L Sbjct: 97 HGRTPPCTDALRAAGIVAVHAGVADPNPVAAG-GAAVLRAAGVDVTVGTLGAEVAAGPLR 155 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +L R H+T K A + D A S ITG ++ +VH LRA SDA++VG GT Sbjct: 156 GWLHATRTGRPHVTWKFAATLDGRSAAADGSSRWITGPAARARVHALRATSDAVVVGTGT 215 Query: 200 VLADDPELTCR--LNGLQEHSPMRIILD---PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 LADDP LT R P+R+++ P LD+ Sbjct: 216 ALADDPALTARDAAGTPVPRQPLRVLVGLRHPRPGSHLDAP------------------- 256 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 ++++ D ++L L RGV +L+EGG +A +F+ + VD ++ + Sbjct: 257 -----------DVLHLRTHDPDEVLAALHARGVVDVLLEGGPRLAGAFLAAGRVDRVLAH 305 Query: 315 RSQIVIGEG 323 + ++G G Sbjct: 306 LAPALLGAG 314 >gi|306833066|ref|ZP_07466197.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC 700338] gi|304424775|gb|EFM27910.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC 700338] Length = 351 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 21/357 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 +M+ A+ ++ TNP V +IVK+G VI RG G HAE A+ E EE Sbjct: 5 YMAQAIAAAKQGFRQIYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEVPEEL 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI +V Sbjct: 65 ANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIEVV 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++E+E + Y KR ++ LK AVS D I + G + +T + VH Sbjct: 125 TQVLENEARALNPHYNFYHEYKRPYVVLKQAVSLDGKIAVLGKRTA-LTNDETNRFVHDE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K AP Sbjct: 184 RDDYQAILVGADTVLIDNPQLLGA--GTSLYPPVRVILDETGRIFDKRELQIFKNQ-SAP 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I + +A +I +I + +L L + + S+ VEGGA V +F+ Sbjct: 241 VYIFSRRQ-----VANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAFLA 295 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 296 SDLWDELISYVTPKVIGGNGRAAMASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|184155252|ref|YP_001843592.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956] gi|183226596|dbj|BAG27112.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956] Length = 352 Score = 162 bits (409), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 160/330 (48%), Gaps = 19/330 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63 S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + + Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ +++ + + Y ++R IT K A+S D + A + IT ++ Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH RA AI+VG GTVLADDP L C L P+R+ILD + L + + T Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239 Query: 242 LAPVIIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 AP +VT N D P ++ + D +LL + SL VEGG Sbjct: 240 SAPTWLVTTNRAATKVDWPA--------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGG 291 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 AV + V+ +I Y +IG+ G+ Sbjct: 292 PAVLTELFQAVPVNQLITYLDPQIIGDQGL 321 >gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans SRS30216] gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans SRS30216] Length = 338 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 111/319 (34%), Positives = 154/319 (48%), Gaps = 25/319 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M+ A+ + +G TS NP V C+++ G V G G G PHAEV AL AG+ Sbjct: 3 DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNALAAAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP ++G G + L G+ Sbjct: 63 RARGGTAYVTLEPCNHTGRTGPCVQALLRAGIARVVFAVADPGA-LAGGGARELRAAGVE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ E + A+LT R H+ K A + D A S I+ S+ QVH Sbjct: 122 VVAGVLAEEAERVNEAWLTSARRHRPHVLWKFAATLDGRSAAADGTSRWISSAASRGQVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + DA++ G GTVLADDP LT R +P LS + Sbjct: 182 DLRRRVDAVVAGSGTVLADDPRLTAR--------------EPDGTLSARQPLRVVVDRRG 227 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + T A + + LL L RGV S+L+EGG +A +F+ Sbjct: 228 RVPATA--------AVLDGSAPTLVSTAATPADLLAELHERGVVSVLLEGGPTLAGAFLA 279 Query: 305 SRLVDSIILYRSQIVIGEG 323 + LVD + Y + ++G G Sbjct: 280 AGLVDRVTAYVAPTLLGAG 298 >gi|160888034|ref|ZP_02069037.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492] gi|317478584|ref|ZP_07937741.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36] gi|156862533|gb|EDO55964.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492] gi|316905225|gb|EFV27022.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36] Length = 351 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 120/360 (33%), Positives = 184/360 (51%), Gaps = 27/360 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60 Query: 63 AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120 Query: 121 QKG--IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TG 176 G +IV ++E+E + + ++T +R +ITLK A S D I + P+ + Sbjct: 121 DAGREVIVG-VLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSS 179 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ VH RA+ AILVG T D+P L R SP+RI+LD KLS + Sbjct: 180 PLTSMLVHKKRAEHSAILVGTRTAELDNPCLNVR--HWYGRSPVRIVLDRQQKLSPSLHL 237 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLL 291 ++ P ++ TE L N+ Y D L +L+ L RG+ SLL Sbjct: 238 FDGSV--PTLVFTEAPHAPLP--------NVEYLPVSDYRRNILPELMETLYTRGLQSLL 287 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRDYFGS 348 VEGG+ SFI++ L D I + + ++ G + +GY E +F R Y S Sbjct: 288 VEGGSQTLQSFIDAGLWDEIFVEEAPHLLHSGVKAPEISDGYPFATEYSFGRSFRHYTAS 347 >gi|86142849|ref|ZP_01061288.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis MED217] gi|85830881|gb|EAQ49339.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis MED217] Length = 343 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 109/326 (33%), Positives = 170/326 (52%), Gaps = 17/326 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68 MS L+ ++ +G T NP V +IV + +IG G G PHAEV A+ +++ Sbjct: 1 MSRCLQLAKNGLGNTYPNPMVGSVIVYEDRIIGEGWHQQAGQPHAEVNAVNSVNDQSLLD 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 AT YV+LEPCSH+G++PPC+ II GI++VV+ DP V+GRG++ L G ++ Sbjct: 61 KATIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVIGTVDPFAEVAGRGIKKLIDAGCEVLV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITGFISKNQ 182 ++E E + + T +KR +I LK A S D I + V IT SK Sbjct: 121 GVLEQECQQLNKRFFTFHQKKRPYIILKWAESLDGFIAPEAKSRSSREPVWITNSYSKQL 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ +ILVG TV AD+P LT R SP RI+LD K+S +S++ + Sbjct: 181 VHKWRAEEQSILVGTKTVEADNPSLTTR--DWSGKSPTRIVLDRELKISEESRVFDES-- 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A ++ TE + K I + + + + ++L L G+ S+++EGG+ +F Sbjct: 237 ATTLVFTEKTKESTS---STKYITVDF-NKNLITEVLQTLYKEGLQSVIIEGGSTTLQNF 292 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328 I+ L D +++ + GI +P Sbjct: 293 IDQELWDEARVFKGKQNF-HNGISAP 317 >gi|331005895|ref|ZP_08329246.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC1989] gi|330420291|gb|EGG94606.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC1989] Length = 397 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 186/358 (51%), Gaps = 37/358 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D RFMS A++ + T NP V C++VK+G VI G G HAE+ AL Sbjct: 1 MTFSADDHRFMSLAIQLAEKGRYTTRPNPCVGCVLVKNGQVISEGWHYRAGEAHAEIHAL 60 Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIE---CGIRRVVVCVDDPDVRVSGRG 115 ++ E A TAYVTLEPCSH GR+ CA + + GI RVV ++DP+ V+G+G Sbjct: 61 QQLPIEVKAENITAYVTLEPCSHQGRTGSCAMALADRTNTGIIRVVYGMEDPNPLVAGKG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 L L + G +V+ +ME + + R +R + KIA S D MA S I Sbjct: 121 LAILRESGCVVEGPLMEQQAAALNQGFFRRMQSQRPWVMAKIATSIDGRTAMASGESQWI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--------LNGLQEHSPMRIILDP 226 T ++ V LRAQS I+ GI ++L D+ L+ R ++ + +H P+R++LD Sbjct: 181 TSAPARRDVQRLRAQSCGIISGIDSILHDNSRLSVRREDSDLANIDDILQHPPLRVLLDT 240 Query: 227 HFKLS----LDSKIIKTALLAPVIIVTEND------DPVLALAFRKKNINIIYCDCRD-- 274 H +++ L + I + A V++ T + VL+L +++++ + Sbjct: 241 HLRIADDDNLSANIFDPSSAAQVLVFTSTAVTDSKMEKVLSLNDSVGDVSVVSPMIKVEQ 300 Query: 275 ----------LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L+++LT+L R ++LVE GA + FI++ LVD +I+Y++ +++G Sbjct: 301 VATTETGHLCLEQVLTVLATRYECNTVLVETGATLLGGFIDAGLVDELIIYQAPVLLG 358 >gi|159044799|ref|YP_001533593.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12] gi|157912559|gb|ABV93992.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12] Length = 365 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 181/334 (54%), Gaps = 15/334 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D R+M AL R +G + NP+V C L+ +G V+GRG T GG PHAEV AL +A Sbjct: 2 SDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQA 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ARGATAYVTLEPC+H+G++ PC +I G+ RVV ++DPD RV+G+G L G Sbjct: 62 GAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAAG 121 Query: 124 II----VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + V R E ++ +L R R +TLK+A++ D I A S ITG + Sbjct: 122 VAVTEGVGRAAAREDQL---GFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEA 178 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LRA+ DA+L+G GT DDP LT R G+ P+R++ + + S++ ++ Sbjct: 179 RRYGHALRARHDAVLIGAGTARTDDPTLTVRGVGVVRQ-PVRVVASRDLDVPIPSRLSQS 237 Query: 240 ALL-APVIIVTENDDPVLALAFRK----KNINIIY-CDCRDLKKLLTILVGRGVTSLLVE 293 APV + + P +A + K + + + ++ LL L RG+T + E Sbjct: 238 VTADAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCE 297 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 GG A A + + VD + ++ + VIG G+P Sbjct: 298 GGGAFAAGLLRAGCVDRLAVFSAGCVIGADGLPG 331 >gi|270295600|ref|ZP_06201801.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20] gi|270274847|gb|EFA20708.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20] Length = 351 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 27/360 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60 Query: 63 AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120 Query: 121 QKG--IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TG 176 G +IV ++E+E + + ++T +R +ITLK A S D I + P+ + Sbjct: 121 DAGREVIVG-VLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSS 179 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ VH RA+ AILVG T D+P L R SP+RI+LD KLS + Sbjct: 180 PLTSMLVHKKRAEHSAILVGTRTAELDNPGLNVR--HWYGRSPVRIVLDRQQKLSPSLHL 237 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLL 291 ++ P ++ TE L N+ Y D L +++ +L RG+ SLL Sbjct: 238 FDGSV--PTLVFTEIPHAPLP--------NVEYLPVSDYRQNILPEIMEMLYTRGLQSLL 287 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRDYFGS 348 VEGG+ SFI++ L D I + + ++ G + +GY E +F R Y S Sbjct: 288 VEGGSQTLQSFIDAGLWDEIFVEEAPHLLHSGVKAPEISDGYPFATEYSFGRSFRHYTAS 347 >gi|313904567|ref|ZP_07837942.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6] gi|313470537|gb|EFR65864.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6] Length = 367 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 171/335 (51%), Gaps = 22/335 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ +R G NP V +IV+DG +IG G G HAE A + E A GA Sbjct: 1 MRRAIELARQGEGWCHPNPMVGAVIVRDGKIIGEGYHRKCGELHAERNAFQSLRESAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC H GR+PPC + II IR+VV+ DP+ +V G+G + L + GI +V+ Sbjct: 61 VLYVTLEPCCHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGIEVVEDF 120 Query: 130 MESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E +F H Y+T+ +R ++ LK A++ D I S ITG ++ +V Sbjct: 121 LREECDALNDVFFH-YITK---RRPYVKLKYAMTADGKIATRTGASKWITGEEAREEVQR 176 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R I+VG GTV DDP L CRL G ++ P+RII D + +S+I+++A Sbjct: 177 MRHACMGIMVGSGTVRKDDPMLNCRLPGGRD--PVRIICDSKLSIGENSQIMRSAEQQRT 234 Query: 246 IIVTENDDPVLALAFRKK----------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 IIV D R++ N+ + DL L+ L + S+L+EGG Sbjct: 235 IIVAACRDVDAGFESRREILEKAGAEVWNLPKQAGEGVDLNLLMEKLGEIEIDSVLLEGG 294 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 +A S + + +V + ++ + + G G SP+E Sbjct: 295 GILADSALRAGIVSEVDVFTAPKIFGGRG-KSPVE 328 >gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3] gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3] Length = 368 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 104/329 (31%), Positives = 171/329 (51%), Gaps = 16/329 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ + NP V C+IVK+G +IG G G PHAE +A+ A E G Sbjct: 11 FMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRSASESIEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128 + YVTLEPC HYG +PPC +I+ + V + + DPD RVSGRG L + GI V + Sbjct: 71 SEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKAGICVYEG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + E + L +Y+ ++ + + +K A + D + S IT ++ V LRA Sbjct: 131 LGKEEAERSLKSYIYQRTHGKPWVVIKSAATVDGQVADRDGQSQWITCPEARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +S AI+VG TVL D+P LT R L P+R+++D + ++K+ +A + + Sbjct: 191 RSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRVVVDSKGVVPPEAKVFHSAGKSLYV 250 Query: 247 IVTENDDPVLALAFRKK----NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 ++ + RKK ++++ + + +L +L+ L +LVEGGAA+ Sbjct: 251 TTPQSSE-----DHRKKIEDLGVDLLVTEPQGAKVNLHELMAYLSTTPTLQVLVEGGAAL 305 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +F+ RLV +++LY ++G+ P+ Sbjct: 306 HTAFLKERLVHALVLYLGPKILGDQRNPT 334 >gi|332885428|gb|EGK05677.1| riboflavin biosynthesis protein RibD [Dysgonomonas mossii DSM 22836] Length = 348 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 112/338 (33%), Positives = 168/338 (49%), Gaps = 16/338 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M L+ + G S NP V ++V + +IG G G HAEV A+ Sbjct: 2 TVDEKYMYRCLQLALNGKGFVSPNPMVGAVVVHNDKIIGEGFHREYGKAHAEVNAIASVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +++ + +T YV+LEPC+H G++PPCAQ II+ I VV+ DP VSGRG++ L Sbjct: 62 DKSLLKESTIYVSLEPCAHQGKTPPCAQLIIDNQIPHVVIACLDPYPAVSGRGIKMLQDA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITG 176 GI VD ++E E + T Q + R +I LK A +QD I A PI+ Sbjct: 122 GIKVDVGILEREAWELNKEFFTIQTKGRPYIYLKWAQTQDGFIDKARDEKDIPQPTPISN 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 SK VH RA AI++G T + D+P LT R +P+R+ILD ++ LD I Sbjct: 182 EFSKMLVHKKRAVVPAIMIGTNTAIKDNPSLTTR--HWYGKNPVRVILDRQGRIPLDYTI 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + V E+ + + F + I D L+ + T L R + S+LVEGG Sbjct: 240 FDGKVETIVFTEKESSPKLEKVTFIQ-----IPFDENILENIFTTLKKRKIISVLVEGGQ 294 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + S I+ RL D + S I G+ +P+ G++ Sbjct: 295 ELLQSIIDKRLWDEAFIEISGITFN-NGVRAPIIAGHV 331 >gi|32474082|ref|NP_867076.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula baltica SH 1] gi|32444619|emb|CAD74621.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula baltica SH 1] Length = 427 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 128/384 (33%), Positives = 191/384 (49%), Gaps = 37/384 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ A+ + G NP V C +V+D + IG+G G PHAEV+AL Sbjct: 46 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCALVRDSVCIGKGYHQRFGGPHAEVEALSSC 105 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G Sbjct: 106 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 164 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + + G+ L AYL R + K A+S D I S ITG S+ Sbjct: 165 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 224 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------------MRIILDPHFK 229 VH LRA DAI VG+GTV+AD+P LT RL+ L + S +R++ Sbjct: 225 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTHTEDRSNQLVRLVYSRSRL 284 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA----FRKKNINIIYCDCRD----LKKLLTI 281 L S++++TA P ++ P +A A ++ C+ D +++ L Sbjct: 285 PDLQSQLVQTASQTPTWLIA---GPQIANADLARLADHDVETWQCESADPIEMVQQSLLW 341 Query: 282 L------VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 L G +T L+VEGG+ + SF + +D + + + IG P PL + ++ Sbjct: 342 LGSKDNPRGLAMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGKCIGGRSAPGPLGDPGIK 401 Query: 336 -----KNFMCVRRDYFGSDVCLEY 354 + R D F +DV L Y Sbjct: 402 ALSDATSLRMSRVDSFDNDVRLIY 425 >gi|213965573|ref|ZP_03393767.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum SK46] gi|213951732|gb|EEB63120.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum SK46] Length = 350 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 163/322 (50%), Gaps = 33/322 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA+ M+ A+ + G T NP + C+I+ GI +G T G HAE QALE AG Sbjct: 15 DAQAMALAIEAGQRVRGTTYPNPPIGCVILDTAGIAVGVAGTEPVGGRHAEPQALEMAGP 74 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+G TA VTLEPC+H GR+PPC + + G+ RV+ V DP+ +G G +WL KGI Sbjct: 75 RAQGGTAVVTLEPCNHIGRTPPCTEALAAAGVSRVIFAVADPNPVAAG-GSEWLRYKGIE 133 Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ + +L +L Q +R HITLK A + D S ITG ++ +V Sbjct: 134 VVEEFQRDQVAAGYLRPWLHWQRTRRPHITLKTAGTLDGFAAATDRTSQWITGEQARARV 193 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTAL 241 H RA+ AI+VG GTVLAD+P LT R +E S P+RI + +++ D+ I Sbjct: 194 HADRARRQAIVVGTGTVLADNPRLTARTPDGEELSTQPLRIAIGTS-EVAADANI----- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + N + D++ L + G+ +LVEGG +A + Sbjct: 248 ---------------------RGDNFRHIRTHDVEVALETMADMGLIDVLVEGGPRLASA 286 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ + VD+I Y + +G G Sbjct: 287 FLEADAVDAIESYIAPAFLGAG 308 >gi|34764917|ref|ZP_00145265.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE; 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885744|gb|EAA23138.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE; 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 223 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 88/207 (42%), Positives = 123/207 (59%), Gaps = 1/207 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL 211 LR + AI+VGI TVL D+P L L Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSDL 211 >gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus Ellin428] gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus Ellin428] Length = 344 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 165/319 (51%), Gaps = 28/319 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AAL +R +G TS NP+V +IV+ G +I RG G PHAE++AL + Sbjct: 3 DEEFMRAALAEARRGLGQTSPNPAVGAVIVRAGKIIARGYHHRAGLPHAEIEALRALPKP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A RGAT YVTLEPCS +GR+PPC + II G RRVV+ DP+ +GRG++ L GI Sbjct: 63 ALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDTGI 122 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E+E + A+ V K + K +S D I +T +++ Sbjct: 123 AVTTDVLEAECRALNAAFNHWIVTKMPLVIAKAGMSLDGRITRPPGEGQWLTNAVARKDA 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR+Q DAIL+G T+ D+P LT R + G ++ P RI++ KL ++ + Sbjct: 183 HRLRSQVDAILIGAETLRQDNPRLTVRGVRGARQ--PWRIVITRSGKLPKEAHLFT---- 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ L +R+K++ + RDL K R +TS+++EGG V Sbjct: 237 --------DEHRERTLVYREKSLRTV---LRDLGK-------RQITSVMIEGGGGVLGEA 278 Query: 303 INSRLVDSIILYRSQIVIG 321 + RLV Y + ++ G Sbjct: 279 FDRRLVQRAHFYLAPLLCG 297 >gi|311745056|ref|ZP_07718841.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1] gi|311302325|gb|EAZ81787.2| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1] Length = 340 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 109/324 (33%), Positives = 169/324 (52%), Gaps = 15/324 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 +M AL + G S NP V C+IVK+ +IG G G HAEV A+ ++ Sbjct: 6 YMRRALELAELGRGKVSPNPVVGCVIVKEDKIIGEGYHQKYGEAHAEVNAVNSVEDQTDI 65 Query: 69 -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T YVTLEPC+H+G++PPCA +++ + +VV+ D + V G+G+Q L + GI V+ Sbjct: 66 VGSTVYVTLEPCAHFGKTPPCANLLVDKKVGKVVIAAFDSNPLVGGKGIQILEEAGIEVE 125 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E + + T+ +KR ++ LK A +QD + + S I+ S+ VH Sbjct: 126 TGLLQEEARWQNRRFFTQIEKKRPYVILKWAQTQDGFVARSDYSSKWISNSSSRRLVHQW 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI+VG T DDP L R +P+R+++D +LS K+ A+ P I Sbjct: 186 RAEEDAIMVGKNTAKYDDPALNVR--DWVGKNPLRLVIDSKLELSQSLKLFDQAV--PTI 241 Query: 247 IV-TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T+ + L F K L ++L L R + SLLVEGG+ + + FI Sbjct: 242 CYNTQKTEESGNLEFVKLKPGF------SLDQILEDLHNRNIQSLLVEGGSFLLNKFIEL 295 Query: 306 RLVDSIILYRSQIVIGEGGIPSPL 329 L D ++ S+ GE GI +PL Sbjct: 296 GLWDEARIFTSRNKFGE-GIKAPL 318 >gi|218296564|ref|ZP_03497292.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23] gi|218243106|gb|EED09638.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23] Length = 377 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 116/380 (30%), Positives = 185/380 (48%), Gaps = 37/380 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G T NP V ++V+DG ++G G G PHAE ALE Sbjct: 1 MRDLDERFLRRALQIAERARGHTHPNPLVGAVVVRDGEIVGEGYHPRAGAPHAEALALEA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YV+LEPC H+GR+PPC+ +I G+ RVV+ DP+ G G+ L Sbjct: 61 AGERARGATVYVSLEPCDHHGRTPPCSLALIRAGVARVVLAARDPNPLAQG-GMARLLAA 119 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++E E + A+ T R + LK A++ D + + ++ S+ Sbjct: 120 GVAVEAGLLEEEAQDQNEAFFTALRRGRPFVLLKAALTLDGRVATRLGDARYVSSEASRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 180 VAHAYRQWLPAVMVGVGTVLQDDPALTVREPDFRPFPLMLEPPPLRDPLKVVLDTEARTP 239 Query: 232 LDSKIIKTALL---APVIIVTENDDPVLALAFRKKNINIIYCDCRDL---------KKLL 279 +++ + A V+I+ P R K + +L ++ L Sbjct: 240 PTARLFRPGPRGERARVLILAGEGAP----KERLKALEAAGARVEELPREGGRVSPERAL 295 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEK-- 336 +L G+ +L+EGG +A +F+ LVD + L+ + ++GEG L EG+ +E+ Sbjct: 296 ALLRAEGIDGVLLEGGPGLAGAFLARGLVDKLALFLAPKLLGEG---RGLLEGFGVERMA 352 Query: 337 ---NFMCVRRDYFGSDVCLE 353 RR++ G D+ LE Sbjct: 353 EALRLRLHRREWLGDDLWLE 372 >gi|330996373|ref|ZP_08320256.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila YIT 11841] gi|329573231|gb|EGG54845.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila YIT 11841] Length = 358 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/336 (36%), Positives = 174/336 (51%), Gaps = 24/336 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-- 64 D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+ G Sbjct: 4 DEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRSVGNP 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L + GI Sbjct: 64 ELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQEAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAG--------CGSVPI 174 V ++E+E ++T +R +ITLK A S D M G+ S P Sbjct: 124 EVTVGVLEAECLALNRRFMTFHTHRRPYITLKWAESADGFMDGLRTDYEKEKPYAFSTPY 183 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T + VH RA AILVG T LAD+P L RL SP+R+++D + L Sbjct: 184 TRML----VHRCRAGHQAILVGRQTALADNPLLNLRL--WPGKSPLRLVVDRNGSLPKHL 237 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLV 292 + V + + P+ + + + D RD L ++L L V SLLV Sbjct: 238 ALFNDGAETRVYLDALSVHPLYG---EQAGVTCVRLDFSRDILPQVLDDLYHLSVQSLLV 294 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 EGG + SFI++ L D I + +S + + E G+PSP Sbjct: 295 EGGRRLLESFISAGLWDEIRVEQSPVWLKE-GVPSP 329 >gi|300769800|ref|ZP_07079680.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum ATCC 33861] gi|300763251|gb|EFK60067.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum ATCC 33861] Length = 350 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/351 (30%), Positives = 170/351 (48%), Gaps = 17/351 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + R+M L + G S NP V +IV + +IG G T+ G PHAEV A+++ Sbjct: 2 NMQERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVK 61 Query: 65 EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 ++ + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+G+GL Sbjct: 62 DQYPDSADRLLEESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGL 121 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L + GI V+ ++E E + TR + R +I LK A + D + I+ Sbjct: 122 GILQEAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYIILKWAETADGYMAKNTDEQAWIS 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 SK VH R++ DAILVG T L D+P LT R + +P R+++D + + Sbjct: 182 NEASKQLVHKWRSEEDAILVGTRTALIDNPSLTVR--EWEGSNPKRVLVDKQLSVPETAA 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I V + D R K I + D + +L L + S+++EGG Sbjct: 240 IFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSVIIEGG 294 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 A FI++ L D + +S+ V E GI +P+ EG L++ D + Sbjct: 295 AKTLQHFIDAGLWDEARVIKSK-VFWEDGIKAPVIEGELKEQHTVASDDVY 344 >gi|312623117|ref|YP_004024730.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor kronotskyensis 2002] gi|312203584|gb|ADQ46911.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor kronotskyensis 2002] Length = 371 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 162/313 (51%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALELAKEASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YVTLEPC HYG+ PC + II+ GI+RVV+ DP+ V+G+G+Q L Q G Sbjct: 67 YLLKNSTMYVTLEPCCHYGKQLPCTEAIIKSGIKRVVIATKDPNPLVNGKGIQILKQHGT 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +++ +++ E + + +I +K+A S D I + V Sbjct: 127 EVIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIAIPSNKRFLFNTEEENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLECNIVKTSDKY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D +K I II+ DL L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIELLSQKGIKIIFAKSSEDGHLDLLDTFLKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 LLNFSLLKQRIAD 318 >gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii CaD3] gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium chlorochromatii CaD3] Length = 366 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 186/358 (51%), Gaps = 19/358 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 +M AL + G S NP V L+V++G +IG G G HAEV A+ EA Sbjct: 9 YMQRALELALRGAGRVSPNPMVGALLVQEGEIIGEGWHERYGEAHAEVNAIAAVTNEAWL 68 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 R AT YVTLEPCSH+G++PPC+ II I RVVV DP V+GRG+ L GI ++ Sbjct: 69 REATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAKLRAAGIEVI 128 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + ++E+E A++ +TLK+A + D + S ITG ++ +VH L Sbjct: 129 EGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLDGKLATVTGASRWITGEEARAEVHRL 188 Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R+ DA+LVG T LAD+ +LT R NG +P+R++LD +L L+S I AP Sbjct: 189 RSVYDAVLVGGATALADNSQLTVRQANG---RNPLRVVLDRSLQLPLESLIFNHE--APT 243 Query: 246 IIVT----ENDDPVLALAFRKKNINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ T ++ V AL +++ + + L+++L L R + S+LVE G+ + Sbjct: 244 LLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQLREVLEELHHRHILSVLVESGSRLG 303 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSDVCLE 353 + + + VD ++++ + + G G+ + G + R +FG D+ LE Sbjct: 304 AALLQAGFVDKLLIFIAPKLFGGDGLSAFAPLGVTVPDEAIALRFELPRFFGKDLLLE 361 >gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1] gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1] Length = 377 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/333 (33%), Positives = 165/333 (49%), Gaps = 15/333 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL 60 P S D M AL+ + + TS NP V C++V G +IG+G T G PHAEV AL Sbjct: 7 PASPAD--LMQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMAL 64 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +A G GATAYVTLEPCSH+GR+ PC ++E GI RVV + DP+ V+G+G + Sbjct: 65 RDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFE 124 Query: 118 WLSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L G+ V+ + L+ + +R + +K A S D + S IT Sbjct: 125 RLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITS 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H RA++ A+L GIGT+LADDP L R P I+D H + ++ Sbjct: 185 PEARADGHAWRARACAVLTGIGTILADDPRLDVR-EAETPRQPHLAIIDSHLQTPPGARF 243 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILV-GRGVTSL 290 + ++I T + D A + + +I DL +L L R V L Sbjct: 244 FEVPQRQ-ILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNEL 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 VE GA + + + +RLVD I+LY + ++G G Sbjct: 303 HVEAGARLNGALVRARLVDEILLYMAPTLLGAG 335 >gi|262382448|ref|ZP_06075585.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B] gi|262295326|gb|EEY83257.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B] Length = 345 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 169/312 (54%), Gaps = 19/312 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182 +V +ME E ++ A++T Q + R +I LK A S+D I S P+T S Sbjct: 125 EVVTGVMEEEARVLNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + + +I TE + ++N+ I D ++++L L R + SLLVEGG Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294 Query: 298 VAHSFINSRLVD 309 + +SF+ + + D Sbjct: 295 LINSFVEADVWD 306 >gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9215] gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9215] Length = 364 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/357 (29%), Positives = 174/357 (48%), Gaps = 9/357 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + TS NP V +I+ K+G +I G G PHAE A ++A Sbjct: 10 KWMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKKDA 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG YV LEPC H+GR+PPC +I GI+R + ++DPDVRV+G+G++ L + GI V Sbjct: 70 RGGAIYVNLEPCCHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQVH 129 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E A++ R K++ K A+S D I + S IT S+ VH Sbjct: 130 LGLCKKESLDLNKAFIYRNTTKKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI++G T+ D+P LT R GL+ P+R++ L S + ++ Sbjct: 190 RAEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L K++ + + + + IL RG ++L E G +A + I + Sbjct: 248 IYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRGCNNVLWECGPRLATAAIKTN 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRD--YFGSDVCLEYIGKN 358 + II + + ++G +PL E G + + + G D+C++ + KN Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKSQLSLIGDDICVKSLFKN 364 >gi|73662304|ref|YP_301085.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494819|dbj|BAE18140.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 347 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 9/317 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +++++ A++ ++ G T NP V ++V G ++G G G HAEVQAL+ A + A Sbjct: 2 SQYLNYAIQLAQMVEGQTGLNPPVGAVVVNRGRIVGIGAHLKKGDKHAEVQALDMAKDNA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G T Y++LEPC+H+G +PPC IIE GI RVV V D + +G + L + GI V+ Sbjct: 62 KGGTIYISLEPCTHFGSTPPCVNKIIEAGINRVVYAVKDTTLPSNGDSI--LQEAGIDVE 119 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + + + + +T+K++ S D S IT + K V LR Sbjct: 120 FRHQPDAENLYKDFFITKRQSVPMVTVKVSCSLDGKQATDTGESKWITNKLVKKDVFKLR 179 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA+L G GT+ AD+P+ T R+ + +P+++IL + + + I K P+ I Sbjct: 180 HHHDAVLTGSGTLNADNPQYTTRIE--EGKNPIKVILAQNGNIDFNLDIFKNT-NTPIWI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 T+N+ AL +++ II ++ ++ L +G+ LLVE G V F+ S Sbjct: 237 YTQNE----ALVTDIEHVEIIQLTNCSVENIMKNLYEKGIGRLLVEAGPTVTSEFLQSNY 292 Query: 308 VDSIILYRSQIVIGEGG 324 + +I+Y + +IG G Sbjct: 293 TNKLIIYYAPKIIGGSG 309 >gi|317474402|ref|ZP_07933676.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii 1_2_48FAA] gi|316909083|gb|EFV30763.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii 1_2_48FAA] Length = 347 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 179/358 (50%), Gaps = 48/358 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E Sbjct: 3 EEKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITG 176 +IV ++E + K + ++T R +ITLK A S D I G S P+T Sbjct: 123 EVIVG-VLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTS 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 + VH RA+ AI+VG T D+P LT R Q SP+RI++D +LS + Sbjct: 182 ML----VHKRRAEHSAIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHL 235 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVT 288 DD + L F + N I D + L +++ L +G+ Sbjct: 236 F--------------DDSIRTLVFTGQPHAAFPNTEYIVIDFQQNILPQIMQHLYAQGLQ 281 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--------LEEGYLEKNF 338 SLLVEGG+ + SFIN+ L D I + S + + G+ +P + E Y +NF Sbjct: 282 SLLVEGGSYLLQSFINAELWDEIFVEESPLKLF-SGVKAPEIGNKIPYVNEQYFGRNF 338 >gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN] gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN] Length = 368 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 164/320 (51%), Gaps = 14/320 (4%) Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARG 69 ALR + + +++ NP V C++V DG ++G+G T G PHAEV AL +A G + RG Sbjct: 11 ALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDVRG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 ATAYVTLEPC+H GR+ PC+ +I GI RVV ++DP+ V+G+G L G+ V+ Sbjct: 71 ATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVEVG 130 Query: 130 MES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + + +R V + K A S D ++ S IT ++ H RA Sbjct: 131 PGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAWRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ A+L GIGTVL D+P L R LQ P +++D + D+ + + Sbjct: 191 RACAVLTGIGTVLDDNPRLDVR--ALQTPRQPHVVVVDSQLQTPPDAHLFIAERACYIYT 248 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +ND V A + + +I+ DL +L L RG+ L VE G + S + Sbjct: 249 AVQND--VKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLL 306 Query: 304 NSRLVDSIILYRSQIVIGEG 323 LVD +++Y + ++G G Sbjct: 307 REGLVDEMLVYLAPTLLGPG 326 >gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110] gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110] Length = 375 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 115/323 (35%), Positives = 162/323 (50%), Gaps = 12/323 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 FM+ AL +R T NP V C++V +G VIG+G T G PHAEV AL +A G Sbjct: 10 FMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGH 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 GATA+VTLEPC+H+GR+ PC + GI RVV + DP+ V+G+G + L G+ Sbjct: 70 SVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVA 129 Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ +E L+ + +R V K + LK A S D G+ S IT ++ H Sbjct: 130 VEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGH 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L G+GTVL DDP L RL P +I+D + ++I P Sbjct: 190 AWRARASAVLTGVGTVLEDDPRLDVRLVETTRQ-PHVVIVDSQLQTPPGARIFMAGR--P 246 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 V I D A A + + I Y DL +L L R V L VE G + Sbjct: 247 VWIYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNG 306 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 S + LVD +++Y + +IG+G Sbjct: 307 SLLREGLVDELLVYLAPKLIGDG 329 >gi|312877999|ref|ZP_07737939.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor lactoaceticus 6A] gi|311795234|gb|EFR11623.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor lactoaceticus 6A] Length = 371 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 12/313 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 + +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 7 SYYMNMALDLAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q L Q GI Sbjct: 67 YLLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ +++ E + + + + +K+A S D I + V Sbjct: 127 EVVEGVLQKEAESINKDFFKYIKKGIPYTAIKVAQSIDGKIAKPSNKRFLFSTEEENVFV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA-LL 242 H LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 187 HSLRQKYMATLVSVNTVISDNPILNARY-GEIVRQPIRVVLDTKLRIPLECNIVKTSDEY 245 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ +EN +D +K I II+ DL + L + + S+LVEGG+ Sbjct: 246 STYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGS 305 Query: 297 AVAHSFINSRLVD 309 + S + R+ D Sbjct: 306 LLNFSLLKQRIAD 318 >gi|261417115|ref|YP_003250798.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373571|gb|ACX76316.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326859|gb|ADL26060.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] Length = 421 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 125/416 (30%), Positives = 189/416 (45%), Gaps = 74/416 (17%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL + + +G + NP+V ++VKDGIV+G+G T G HAEV AL +AGE AR Sbjct: 7 NFMQFALEQAFFAIGESRPNPAVGAVVVKDGIVVGKGRTQRPGSAHAEVMALRDAGELAR 66 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GA+ +VTLEPC HYGR+PPC + IIE GI++V DP+ V G+ + L + G+ V Sbjct: 67 GASIFVTLEPCCHYGRTPPCTKAIIEAGIQKVYFAHSDPNPVVHGKSRKILEEAGVEVHE 126 Query: 129 MM------------------------------------ESEG-------KIFLHAYLTRQ 145 + E+EG + + AY Sbjct: 127 GVDACILACVEDCSNGESCTECRVFEFTSSLPLDKASREAEGLAVFAEVERYFEAYDYFV 186 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV----HLLRAQSDAILVGIGTVL 201 KR+ + +K AVSQD +G + I+K H LRA SDA+LVG GT+L Sbjct: 187 STKRTFVEVKSAVSQDGFMGCVDKAGNHLPLAITKQGANCWNHELRAMSDAVLVGAGTLL 246 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTALLAPVIIVTENDDPVLA 257 AD+P L R ++P++I+ H + + D KI + P++ +L Sbjct: 247 ADNPGLDVRYAA--GNNPVKIVWAGHHEFTADEISRLKIFSASDAKPIVFSCVAQPKLLN 304 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV--------- 308 +A +N + + + + ++ L RG+ L+VE GA +A N V Sbjct: 305 VAECVILLNDSFAE--NWRAMVDDLSARGMHRLMVEPGAGLARELFNGAAVAQSQNAQPL 362 Query: 309 -DSIILYRS---------QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + L+RS + +I G + + LE L N + G DV Y Sbjct: 363 WNRLDLWRSTDSSVDIALENLIESGAVKAGLEYPELPANIVAKESAVIGPDVLTVY 418 >gi|89891631|ref|ZP_01203135.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BBFL7] gi|89516178|gb|EAS18841.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BBFL7] Length = 337 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/360 (31%), Positives = 173/360 (48%), Gaps = 39/360 (10%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA---- 63 ++M L+ ++ +G T NP V +IV + +IG G G PHAEV A+ +A Sbjct: 6 KYMQRCLQLAQNGLGTTYPNPLVGSVIVSENDEIIGEGWHLKSGEPHAEVNAVRDAEKKG 65 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G+ AT YV LEPCSH G++PPCA I++ G ++VVV DP +V+G+G+ + + Sbjct: 66 YDGDAFAKATIYVNLEPCSHTGKTPPCASMIVQKGFKKVVVGTLDPHDKVAGKGITIIEK 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGF 177 GI +V ++E E + T +R ++ LK A + D I A V IT Sbjct: 126 AGIEVVVGILEKECNELNKRFFTFHRRQRPYVILKWAETSDGFIAPATKNEQQPVWITNK 185 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S+ H LRA+ DAILVG TV+ D+P LTCR +P R+ILD ++ D +++ Sbjct: 186 YSRQLSHQLRAEEDAILVGAKTVIDDNPSLTCR--DWSGKNPTRVILDSRNSITSDYQVM 243 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A P L L N ++L L V S+++EGG Sbjct: 244 DDAA------------PTLKLQLSSSNT----------LEILNSLYQNNVQSVIIEGGTT 281 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + V+ G+ +P+ +G ++ + R +DV Y K Sbjct: 282 TIQSFIDTGLWDEAYQFMGTEVLFHEGLQAPVLKG----DYSMLYRKMIANDVLKIYRKK 337 >gi|162452084|ref|YP_001614451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] gi|161162666|emb|CAN93971.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] Length = 381 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 12/335 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 P DA M A+ + H + S NP V +++ G V+ A G HAE AL Sbjct: 8 PDPELDAAMMRLAIEEA--HKAMPSPNPPVGAVVLNAAGEVVAVAHHARAGEEHAEGLAL 65 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARG T YVTLEPC+H GR+PPC ++ GI+RVVV DP+ V G G Q LS Sbjct: 66 AAAGDAARGGTLYVTLEPCNHEGRTPPCVDAVLSAGIKRVVVGAPDPNPSVVGGGAQRLS 125 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ VD + +E + + + HI LK+A+S D I S +TG + Sbjct: 126 DAGLAVDVGVAGAEARALIAPWTKFITTGIPHIALKLALSLDGRIATRTGASKWVTGPEA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKII 237 + +V LR++ DA+ +GIGT LADDP LT R + L SP+R++ D +L L +++ Sbjct: 186 RAKVQELRSRHDAVAIGIGTALADDPRLTLRESALAPGGRSPIRLVFDTRLRLPLHTRLA 245 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIY-----CDCR-DLKKLLTILVGRGVTSLL 291 +TA P ++T D P A ++ + R D+ + + +G+ S+L Sbjct: 246 QTAREVPTWVLTGADAPEEAEQVLVDAGCVVLRAPTSAEGRVDVTAAMRLCASQGIVSIL 305 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 VEGGA +A S + SRL D + + + I++G G P Sbjct: 306 VEGGAELAGSLLASRLPDELHAFVAPILLGPRGRP 340 >gi|312139593|ref|YP_004006929.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribg [Rhodococcus equi 103S] gi|311888932|emb|CBH48245.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibG [Rhodococcus equi 103S] Length = 336 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 118/329 (35%), Positives = 162/329 (49%), Gaps = 40/329 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 ++S DA M A+ S G TS NP V +I+ G V+G G T G PHAEV AL Sbjct: 1 MTSLDA-AMRLAIDASEAARGSTSPNPPVGAVILDASGAVVGVGATRPPGGPHAEVVALA 59 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGL 116 AGE ARG TA VTLEPC+H GR+ PC++ +I+ GI V V DP+ +G R Sbjct: 60 AAGERARGGTAVVTLEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNPAAAGGADTLRAA 119 Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + G++ D L A+L RQ R H+T K A + D A S ITG Sbjct: 120 RIEVTGGLLADDAERGP----LRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITG 175 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDS 234 ++ +VH RA+ DAI+VG GTVLADDP LT RL L H P+R+++ + Sbjct: 176 PEARARVHADRARLDAIVVGTGTVLADDPWLTARLPDGSLAPHQPLRVVVG-------NR 228 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + TA + DD L R ++ I D +LVEG Sbjct: 229 PVPSTARVL--------DDAAPTLVLRTHDVGEILSALADQDD------------VLVEG 268 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G +A +F+ + +VD + Y + +V+G G Sbjct: 269 GPRLAGAFLAAGVVDRVQAYIAPVVLGAG 297 >gi|33862648|ref|NP_894208.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9313] gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9313] Length = 368 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 110/326 (33%), Positives = 171/326 (52%), Gaps = 9/326 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AG++A Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC + +I G+RRVVV + DPD RV+G G+ L G+ ++ Sbjct: 74 GGTLLVTLEPCCHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E A++ R R LK A+S D + S I+G ++ VH LR Sbjct: 134 AVLELEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARRWVHRLR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q DA++VG GTV ADDP LT R G + P R++L L +++ TA +A ++ Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWNTA-VAQTLV 250 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + LA + ++ + +LL L + +L E G +A + + Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPVSEPLELLQALAQQDCNRVLWECGPGLAAAALQQGC 310 Query: 308 VDSIILYRSQIVIGEGGIP--SPLEE 331 V + + + ++ GG+P +PL++ Sbjct: 311 VQELAVVVAPKLL--GGLPARTPLDD 334 >gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM 44233] gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM 44233] Length = 366 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 169/348 (48%), Gaps = 39/348 (11%) Query: 28 NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C L+ G +G G G PHAEV AL AG ARG TA V+LEPC+H GR+ Sbjct: 31 NPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALTAAGPLARGGTAVVSLEPCNHTGRTG 90 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK------IFLHA 140 PC+Q +I G+ RV+V V DP +G G+ L Q G+ V + G+ HA Sbjct: 91 PCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQAGVQVVDLPSLAGQDPAAAAAVEHA 149 Query: 141 ------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 +L R +T K+ ++ D + A S IT S+ VH LRA+ D I+ Sbjct: 150 QDVNRVWLAAMRHGRPFVTWKVGMTIDGRVAAADATSRWITSPQSRADVHALRARVDTIM 209 Query: 195 VGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG+GTVL DDP LT R + + P+R+++D + ++++ A AP + T Sbjct: 210 VGVGTVLDDDPALTVRDDQGEPVGRQPLRVVIDSSGRTPAQARVLDDA--APTWLATAES 267 Query: 253 DPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 A D R DL +L L RG +L+EGG +A SF+++ LVD + Sbjct: 268 AGTGA-------------DGRVDLAAVLAELWRRGRRHVLLEGGPHLAASFLDAGLVDEV 314 Query: 312 ILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354 + Y + ++G G PS L G + V FG DV L Y Sbjct: 315 VAYVAPTLLGAG--PSALSGGAVGTLSDAHAAELVDLTRFGPDVRLRY 360 >gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Polaromonas sp. JS666] gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp. JS666] Length = 373 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/339 (32%), Positives = 168/339 (49%), Gaps = 20/339 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 F+ AL +R VG + NP V C+I D V+G G T G HAE+ AL +A Sbjct: 7 FIDQALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARR 66 Query: 68 R---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 GATAYVTLEPCSH+GR+ PC +I GI++VV + DP+ VSG+G + + GI Sbjct: 67 HVVAGATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V +E + + +R + K + +KIA S D + S IT ++ Sbjct: 127 EVVVGPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDG 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA++ AIL GIGT+L D+P L R + P +++D +L L++ + Sbjct: 187 HAWRARASAILTGIGTILEDNPRLDVR-SVATPRQPHLVVVDSRLQLPLNANLFTGNRTI 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLVEGG 295 V +D AL ++ + +IY R DL +L L R V + VE G Sbjct: 246 YVYAAVPDDAKKTAL--EERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPS--PLEE 331 + S + LVD ++Y + ++G G G+ S PL++ Sbjct: 304 HKLNGSLLREELVDEFLVYLAPKLLGSGNGMASFGPLQQ 342 >gi|254556365|ref|YP_003062782.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum JDM1] gi|254045292|gb|ACT62085.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum JDM1] Length = 355 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 170/320 (53%), Gaps = 5/320 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+LT RL + + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPS 327 +D + Y + ++IG G+P+ Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321 >gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916] gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916] Length = 386 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 19/365 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ G ++G G A G PHAEV AL +AG+ AR Sbjct: 11 WMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVGALAQAGDAAR 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H+GR+PPCA +I GI+RVVV + DPD RV+G GLQ L G+ ++ Sbjct: 71 GGTIVVTLEPCCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQRLRDAGLEVIS 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E A++ R R LK A+ D ++ S I+G ++ VH LR Sbjct: 131 GVLEAEAAYQNRAFVHRVQTGRPWGVLKWAMGLDGRTALSNGASQWISGPPARAWVHQLR 190 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246 A DA++VG GTV ADDP LT R G P+R++L L +++ +AP + Sbjct: 191 AGCDAVIVGGGTVRADDPLLTSR--GRCASEPLRVVLSRSLDLPQSAQLWDQT-VAPTLV 247 Query: 247 ---------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 E V A + + + D + + L L RG +L E G + Sbjct: 248 AHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEALFPELASRGCNRVLWECGPS 307 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A + ++ V + + + V+G +PL + F + + S + +G+ Sbjct: 308 LAAAALHQGCVQELAVVIAPKVMGGELARTPLG----DLGFTAMDQVVPVSLAAAQNLGR 363 Query: 358 NLCLQ 362 +L LQ Sbjct: 364 DLLLQ 368 >gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense DSM 14796] gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense DSM 14796] Length = 372 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 106/333 (31%), Positives = 165/333 (49%), Gaps = 24/333 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + TS NP V C++VKD +I +G G PHAE AL+ + G Sbjct: 16 FMKKALDLALNGKYYTSPNPMVGCIVVKDKKIISQGYHRAYGEPHAEANALKPKYIDFSG 75 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 A YVTLEPC HYG++P C II GI+RV + DP+ +++G+ ++ L GI + Sbjct: 76 ADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIEVYTG 135 Query: 129 MMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E + F++ + + +EK + K A++ D S I+ S+ VH LR Sbjct: 136 ILEKEAR-FINRHFFKAMEKSMPWLIYKCAMTLDGKTADHNFKSKYISSVKSRKYVHELR 194 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DAI+VG T + DDP L RL G+Q+ R+I+DP L D + T I+ Sbjct: 195 AECDAIIVGYRTAIFDDPLLNIRLKGVQKKVN-RVIIDPKAALPKDLMVFNTPNEGHTIL 253 Query: 248 VTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 V + V L +KN Y D L+ L + + +L+EGG Sbjct: 254 VIQKGFRNKVTDQIESQGVEVLEVEEKN---FYVD------LMKELFKKNLIKILLEGGG 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 ++A + +RL+D + + + ++G P+P Sbjct: 305 SLACHMLKNRLIDELNFFIAPKILGGKNSPTPF 337 >gi|255535790|ref|YP_003096161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Flavobacteriaceae bacterium 3519-10] gi|255341986|gb|ACU08099.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Flavobacteriaceae bacterium 3519-10] Length = 342 Score = 159 bits (403), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 102/326 (31%), Positives = 166/326 (50%), Gaps = 15/326 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M + ++ +G T NP V +IV DG +IG G G PHAE+ A+ + Sbjct: 3 DELYMKRCIELAKKALGQTYPNPMVGSVIVHDGRIIGEGFHQKAGSPHAEINAINSVKDP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + R +T YV+LEPC+H+G++PPCA + E G ++VV+ + D +V+G+G Q L GI Sbjct: 63 SLLRDSTIYVSLEPCAHFGKTPPCADKLAEIGFKKVVIGILDSHDKVNGKGKQILENAGI 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++ +E + Q +KR I LK A S D I G I ++K V Sbjct: 123 EVVTDVLRNECFDLNKRFFAFQEKKRPFILLKWAESADRFID-KDFGPTQIGNALTKQYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR++ AILVG T L D+P LT R + +P+RI++D K+ I + A Sbjct: 182 HTLRSEEHAILVGTNTALTDNPSLTVR--EISGRNPVRILVDFDLKVPTSFNIYNSE--A 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHSF 302 P ++ + V + +I+ I + L++ L + + S++VEGG F Sbjct: 238 PTLVFNGVKNSV------EGHISFIKISKDNFPATLMSQLYEKQIQSVIVEGGRFTLQQF 291 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328 I++ L D ++ R++ + G +P Sbjct: 292 IDTDLWDETVIIRNENINLTNGTKAP 317 >gi|269956518|ref|YP_003326307.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica DSM 15894] gi|269305199|gb|ACZ30749.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica DSM 15894] Length = 350 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 109/303 (35%), Positives = 152/303 (50%), Gaps = 33/303 (10%) Query: 28 NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83 NP V C L+ DG VIG G G PHAEV AL +A G + RGATA VTLEPC+H G Sbjct: 32 NPRVGCVLLAPDGTVIGEGWHRGAGTPHAEVAALHDAHTRGCDPRGATAVVTLEPCNHTG 91 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL-HAYL 142 R+ PCAQ +++ GI VV +DDP R SG G L GI V + + + L H + Sbjct: 92 RTGPCAQALVDAGITDVVHAIDDPGAR-SGGGADHLRAHGIRVTSEVRAAAALELVHHWH 150 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +TLK A + D + + S ITG ++ H +RAQ DAI V GT LA Sbjct: 151 HAVTAGRPWVTLKTATTLDGRVAASDGTSKWITGPEAREHAHSVRAQVDAIAVTTGTALA 210 Query: 203 DDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DDP LT R GL H P+R+++ H L +++ Sbjct: 211 DDPALTARTPDGGLAAHQPLRVVVG-HRDLPPGARL------------------------ 245 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 R + ++ D+ +L L R + LLVEGG A+A + + + VD + Y + +++ Sbjct: 246 RDDDAETLHLRTHDVHHVLAALHDREIRHLLVEGGPALATALLAADAVDELHAYIAPVIL 305 Query: 321 GEG 323 G+G Sbjct: 306 GDG 308 >gi|150010266|ref|YP_001305009.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis ATCC 8503] gi|149938690|gb|ABR45387.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis ATCC 8503] Length = 359 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 168/312 (53%), Gaps = 19/312 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182 +V +ME E + A++T Q + R +I LK A S+D I S P+T S Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + + +I TE + ++N+ I D ++++L L R + SLLVEGG Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294 Query: 298 VAHSFINSRLVD 309 + +SF+ + + D Sbjct: 295 LINSFVEADVWD 306 >gi|255012465|ref|ZP_05284591.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_1_7] Length = 359 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 110/339 (32%), Positives = 180/339 (53%), Gaps = 19/339 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQ 182 +V +ME E + A++T Q + R +I LK A S+D I + P+T S Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVLEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLDG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 +L +I TE + ++++ I D ++++L L R + SLLVEGG Sbjct: 243 SLRT--LIFTEKE------VENREDVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + +SF+ + + D + + + + +G LE+G + + Sbjct: 295 LINSFVEADVWDEARVETAPVRLYQGVHAPMLEKGVVRR 333 >gi|68536087|ref|YP_250792.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium jeikeium K411] gi|68263686|emb|CAI37174.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium jeikeium K411] Length = 354 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 117/352 (33%), Positives = 167/352 (47%), Gaps = 43/352 (12%) Query: 20 WHVG-LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 W L S NP V +I G V+GRG T G HAEV ALE+AGE+ARG A VTLE Sbjct: 14 WQAAQLASPNPPVGAVIEDPSGQVVGRGFTQAPGGAHAEVVALEQAGEKARGGRAIVTLE 73 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD---------- 127 PC+H GR+ PCA+ +I GIRRV DP+ G G L G+ V Sbjct: 74 PCNHTGRTGPCAEALIRAGIRRVDFLFADPNPIAEG-GAATLRAAGVEVHGPYLPNPTTS 132 Query: 128 --RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + +++ + +L + ++R H+ LK+A + D + S ITG ++ VH Sbjct: 133 PAAKLPAWSQMYSVEPWLISEAQQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVAVH 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + DAILVG GT++AD+P LT R D + L Sbjct: 193 EDRTRRDAILVGTGTIVADNPRLTAR--------------------DADGRPFPEELQPL 232 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +I+ +D P A F ++ RD+ ++L L R V +LLVEGGA VA +F+ Sbjct: 233 RVIMGTSDIPAGAAVFATPG-RALHLQTRDVHEVLAELWKRDVRTLLVEGGAQVAAAFVK 291 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR------DYFGSDV 350 + +VD + Y + V+G G E L + +RR FG D+ Sbjct: 292 ADVVDEVQYYAAPAVLGAGVASLSDSENNLGQTIGDIRRFVPRELQVFGQDL 343 >gi|218131999|ref|ZP_03460803.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697] gi|217985875|gb|EEC52215.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697] Length = 347 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 178/358 (49%), Gaps = 48/358 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E Sbjct: 3 EEKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITG 176 +IV ++E + K + ++T R +ITLK A S D I G S P+T Sbjct: 123 EVIVG-VLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTS 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 + VH RA+ I+VG T D+P LT R Q SP+RI++D +LS + Sbjct: 182 ML----VHKRRAEHSTIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHL 235 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVT 288 DD + L F + N I D + L +++ L +G+ Sbjct: 236 F--------------DDSIRTLVFTGQPHAAFPNTEYIVIDFQQNILPQIMQHLYAQGLQ 281 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--------LEEGYLEKNF 338 SLLVEGG+ + SFIN+ L D I + S + + G+ +P + E Y +NF Sbjct: 282 SLLVEGGSYLLQSFINAELWDEIFVEESPLKLF-SGVKAPEIGNKIPYVNEQYFGRNF 338 >gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM 4252] gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM 4252] Length = 368 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 121/324 (37%), Positives = 165/324 (50%), Gaps = 30/324 (9%) Query: 23 GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA----GEEA-RGATAYVTL 76 G S NP V A L+ DG V+ G G PHAE A+EEA G EA R AT YV L Sbjct: 13 GRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGPEALRRATLYVNL 72 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGK 135 EPC+HYG++PPCA FII GI RVVV + DP +V+GRG+ L G+ V+ ++E+ + Sbjct: 73 EPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGVQVEVGVLEAACR 132 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 F A++ R +TLK+A + D + S I+G ++ VH RA D +LV Sbjct: 133 RFNEAFVHHVETGRPLVTLKMAQTLDGFVATRTGQSRWISGERARKLVHCWRAVLDGVLV 192 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILD------PHFKLSLDSKIIKTALLAPVIIVT 249 G GT ADDP LT R ++ P+RI+LD P +L D + +T + IV Sbjct: 193 GSGTAAADDPALTVRH--VEGRQPVRIVLDRTGGLPPTLRLFTDEQAART-----LAIVG 245 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV------GRGVTSLLVEGGAAVA 299 P A ++ + R DL+ LL L GR + SLLVE G +A Sbjct: 246 PGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLERLGREGGPDGRPLQSLLVEAGPRLA 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 + LVD L+ + + GEG Sbjct: 306 TALFRQGLVDRFFLFIAPRLFGEG 329 >gi|329964682|ref|ZP_08301736.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057] gi|328525082|gb|EGF52134.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057] Length = 349 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 20/330 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ E Sbjct: 4 EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEP 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 A + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 ALLKKSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLKDAGR 123 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++E E K + ++T +R +ITLK A S D I + P+ + ++ Sbjct: 124 EVIVG-VLEEECKSLIRRFITFHTLQRPYITLKWAESADKYIDLNRTNGSPVVLSSPLTA 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA+ AI+VG T D+P L R SP+RI+LD K SL + + Sbjct: 183 MLVHKKRAEHKAIMVGTHTAWLDNPSLNIR--HWSGKSPVRIVLDK--KQSLPASLHLFD 238 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RD-LKKLLTILVGRGVTSLLVEGGAAV 298 P ++ TE L N+ + D RD L +++ L RG+ SLLVEGG+ + Sbjct: 239 GSVPTLVFTEMPHKPLP------NVEYLPIDYQRDILPQIMETLYKRGIQSLLVEGGSIL 292 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SFI++ + D I + + ++ G+ SP Sbjct: 293 LQSFIDAGMWDEIFVEEAPNLL-HSGVKSP 321 >gi|296395033|ref|YP_003659917.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM 44985] gi|296182180|gb|ADG99086.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM 44985] Length = 343 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 172/330 (52%), Gaps = 35/330 (10%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEV 57 MPV D FM A+ SR G TS NP V A L+ DG ++GRG T G HAEV Sbjct: 1 MPVRDLPVDEAFMREAIAVSRLARGRTSPNPPVGAVLVSPDGQIVGRGATRPPGQEHAEV 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL +AGE ARGATAYVTLEPC+H GR+ PCA+ +++ G+ VV V DP+ R SG G + Sbjct: 61 VALAQAGERARGATAYVTLEPCNHVGRTGPCARALVDAGVAAVVCAVPDPNQR-SGGGAK 119 Query: 118 WLSQKGIIVD-RMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L G+ V ++ E + L +L Q R H+T K A + D S IT Sbjct: 120 TLEAAGVGVRVGVLAHEARTGPLREWLHAQRTGRPHVTWKFAATLDGRSAARDGSSQWIT 179 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233 G + VH +RA+ DAI+VG GT LADDP LT RL L P R+++ +L Sbjct: 180 GPQIRKSVHAVRAELDAIIVGTGTALADDPWLTARLPDGSLAPRQPTRVVVG-MTELPRG 238 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++++ + AP ++ + DP ALA +++ L+E Sbjct: 239 ARVLDGS--APTVLA-KTRDPAEALAMLGDAVHV-----------------------LLE 272 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GG +A +F+ + LVD + + + +++G G Sbjct: 273 GGPTLAAAFLRAGLVDLVQAHIAPVLLGAG 302 >gi|313885967|ref|ZP_07819705.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica PR426713P-I] gi|312924497|gb|EFR35268.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica PR426713P-I] Length = 343 Score = 159 bits (402), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 119/349 (34%), Positives = 175/349 (50%), Gaps = 31/349 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 8 TSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRS 67 Query: 63 AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 EE R AT YV+LEPC+HYG++PPCA+ + RVV+ + DP +V GRG+ Sbjct: 68 VPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAGLRPARVVIAMLDPFAKVDGRGVAR 127 Query: 119 LSQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVP 173 L + GI V + I L+ +L Q R ++TLK A S D+ I A Sbjct: 128 LREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYT 187 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIIL------DP 226 + + + VH LR+ DAILVG T DDP LT R +G Q P+R++ P Sbjct: 188 FSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSGSGGQ---PIRLLWCHSRLPRP 244 Query: 227 HFKLSLDSKIIKTALLAPVII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 ++ D+ LL P ++ VT+ P +++ + +++ LLT+L Sbjct: 245 ELRMLQDASAPTILLLPPALLEQVTDGQYPT--------HVSCL-ATTGEVRDLLTLLHS 295 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 +G+ SLLVEGGA V F+++ L D I + + + + E G+P+P E + Sbjct: 296 QGIESLLVEGGAQVLQRFLDAGLYDEINVEHAPVELRE-GVPAPHLEQW 343 >gi|308180337|ref|YP_003924465.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045828|gb|ADN98371.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum subsp. plantarum ST-III] Length = 355 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 104/320 (32%), Positives = 169/320 (52%), Gaps = 5/320 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+LT RL + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVR-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPS 327 +D + Y + ++IG G+P+ Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321 >gi|161504399|ref|YP_001571511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865746|gb|ABX22369.1| hypothetical protein SARI_02510 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 367 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 188/370 (50%), Gaps = 28/370 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPDVGCVIVNNGEIVGEGYHQRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+G GL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGCGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R L QE+ P+RI++D +++ Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAH 242 Query: 235 KIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +I++ + E+ D V ++ N ++ DL L+ L + + S+ Sbjct: 243 RIVQQPGETWIARTQEDSRAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSI 296 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 VE G +A + + + LVD +I+Y + ++G +P LE+ F + Sbjct: 297 WVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRH 355 Query: 346 FGSDVCLEYI 355 G DVCL + Sbjct: 356 VGPDVCLHMV 365 >gi|260662243|ref|ZP_05863139.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum 28-3-CHN] gi|260553626|gb|EEX26518.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum 28-3-CHN] Length = 352 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 113/330 (34%), Positives = 159/330 (48%), Gaps = 19/330 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63 S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + + Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V+ +++ + + Y ++ IT K A+S D + A + IT ++ Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQWPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH RA AI+VG GTVLADDP L C L P+R+ILD + L + + T Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239 Query: 242 LAPVIIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 AP +VT N D P ++ + D +LL + SL VEGG Sbjct: 240 SAPTWLVTTNRAATKVDWPA--------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGG 291 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 AV + V+ +I Y +IG+ G+ Sbjct: 292 PAVLTELFQAVPVNQLITYLDPQIIGDQGL 321 >gi|317508958|ref|ZP_07966591.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC BAA-974] gi|316252723|gb|EFV12160.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC BAA-974] Length = 363 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 109/299 (36%), Positives = 152/299 (50%), Gaps = 32/299 (10%) Query: 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPC 88 P A L+ G ++GRGVT G HAEV A+ EAGE ARGATAYVTLEPC H GR+ PC Sbjct: 46 PVGAVLVSPGGQIVGRGVTQPPGQAHAEVMAIAEAGERARGATAYVTLEPCDHVGRTGPC 105 Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLHAYLTRQV 146 ++ +I GI VV V DP+ R SG G + L G+ V + + K L +L Q Sbjct: 106 SRALIAAGIAEVVYAVPDPNPRSSG-GARTLEAAGVRVRSGVLADEVRKGPLREWLHVQR 164 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R H+T K A + D S ITG + VH R + DAI+VG GT LADDP Sbjct: 165 TGRPHVTWKFAATLDGRAAAKDGTSQWITGPQIRESVHATRGELDAIIVGTGTALADDPW 224 Query: 207 LTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 LT RL L H P R+++ +L ++++ A AP ++ + DP ALA Sbjct: 225 LTARLPDGSLAPHQPTRVVMG-TRELPEAARVLDDA--APTVLA-KTHDPAEALAMLGDK 280 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ L+EGG +A +F+ + LVD + + + ++G G Sbjct: 281 VHV-----------------------LLEGGPKLAAAFLKAGLVDLVHAHLAPALLGAG 316 >gi|325953844|ref|YP_004237504.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922] gi|323436462|gb|ADX66926.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922] Length = 345 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 107/329 (32%), Positives = 166/329 (50%), Gaps = 20/329 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64 D +M+ L+ + +G T NP V +IV + +IG G T++ G PHAEV A+ E Sbjct: 7 DEFYMNRCLQLAANGLGNTYPNPFVGSVIVHNQNIIGEGFTSFYGGPHAEVNAIHSVEKK 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E +T YVTLEPC+H+G++PPC+ IIE I RVVV DP V+G G+ + GI Sbjct: 67 ELLPSSTLYVTLEPCAHFGKTPPCSDLIIEHKIPRVVVGCLDPFALVNGEGINRMRTHGI 126 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E E + T +KR ++ LK A + + I+ SK V Sbjct: 127 EVSVGILEKECLELNRRFFTIHQKKRPYVILKWAQTANGYFAPKNHTQQWISNRFSKQLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R Q AILVG T + D+P+L RL +Q +P+R+++D + LS + Sbjct: 187 HWWRTQEQAILVGKNTAIVDNPQLNSRL--VQGRNPIRVLID--YDLSTPTTHYLFDQTL 242 Query: 244 PVIIVTE----NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P II + ++ + + + K N L+++L IL + + S+++EGG+ Sbjct: 243 PTIIFNKVKGGKNELIEYIQLQSKENN--------LEEILRILYQKNIQSIIIEGGSRTL 294 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328 +FI L D ++ S V E GI +P Sbjct: 295 QTFIEQNLWDEARVFSSSTV-WEDGIFAP 322 >gi|304320114|ref|YP_003853757.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Parvularcula bermudensis HTCC2503] gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Parvularcula bermudensis HTCC2503] Length = 366 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 160/319 (50%), Gaps = 9/319 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A G T+ NP V C++VK G ++G G G HAE+ AL+ AG EARGA Sbjct: 9 MDRAAALGELGAGFTAPNPMVGCVLVKGGQIVGEGYHPRPGADHAEIAALKAAGAEARGA 68 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 AYVTLEPC+HYG +PPC + +IE G+ VV V DP+ SG G + L GI V Sbjct: 69 VAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADPNPLASG-GRETLQAAGIAVRAHP 127 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 A+ R + K A + D + G S ITG ++ + H LR +S Sbjct: 128 TLAASRLTDAWRFSLTADRPWVAAKFAATLDGRVATRGGDSQWITGPAARARSHDLRQRS 187 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 AI+VG+GTVLAD+P L R G +++I D + + + + PV+++T Sbjct: 188 GAIVVGVGTVLADNPALNPRPEGRAAAETLKVIFDSQARTPPHAACLSSP--GPVLLITA 245 Query: 251 NDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTILVGR-GVTSLLVEGGAAVAHSFIN 304 D P A A ++ +II + L+ L L G S++VEGG + SF + Sbjct: 246 EDAPGAAKSALKESGAHIISVQRENEGLCLRSALHCLRADFGCLSIMVEGGGRLLGSFAD 305 Query: 305 SRLVDSIILYRSQIVIGEG 323 + L+D + + + ++G G Sbjct: 306 AGLIDEVWAFLAPKILGGG 324 >gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 355 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 172/318 (54%), Gaps = 13/318 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL ++ G TNP V C+IVKD ++GRG G HAEV A+ +AG+ A Sbjct: 5 KYMQLALDLAQKGKGRVYTNPLVGCVIVKDNKIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-D 127 GA YVTLEPC+ YG+ PC II+ GI+RV V PD VSG G + L + I V + Sbjct: 65 GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAV--PDSNVSG-GREILERNNIKVHE 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +++ + +I + YL + ++ + +++K A++ D I S IT S+N VH +R Sbjct: 122 GLLKKQSRILIKDYL-KHLKNKPKVSIKAAMTLDGKIATYEYDSKWITSEKSRNFVHKMR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DA+LVG+ T L D+P LT L+ +P+R+++D KL + + P +I Sbjct: 181 ARYDAVLVGMNTALKDNPILTTHSKNLK--NPIRVVIDSGLKLPKSHHLFDACV--PTVI 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAHSFI 303 V + + + ++ I + + KK ++++ + + +L+EGG+ + S + Sbjct: 237 VYDLNITNIPKYLNREGIILSPVNIDAAKKDFSVIIKKLDSLSIKRILIEGGSEIIASAL 296 Query: 304 NSRLVDSIILYRSQIVIG 321 S +VD I + + + G Sbjct: 297 FSDVVDDIYFFIAPKITG 314 >gi|124023623|ref|YP_001017930.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9303] gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9303] Length = 368 Score = 159 bits (401), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/234 (40%), Positives = 133/234 (56%), Gaps = 4/234 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AGE+A Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC Q +I G+RRVVV + DPD RV+G G+ L G+ ++ Sbjct: 74 GGTLVVTLEPCCHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E A++ R R LK A+S D + S I+G +++ VH LR Sbjct: 134 AVLEPEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARSWVHRLR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 Q DA++VG GTV ADDP LT R G + P R++L L +++ A+ Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWDIAV 245 >gi|224025262|ref|ZP_03643628.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM 18228] gi|224018498|gb|EEF76496.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM 18228] Length = 306 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 111/310 (35%), Positives = 164/310 (52%), Gaps = 25/310 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ +R + + NP V ++V +IG G A G HAEV AL +E Sbjct: 4 DEKYIRRCIQLARNGLCNAAPNPMVGAVVVYRDRIIGEGYHARCGEGHAEVNALRSVRDE 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + AT YV+LEPCSHYG++PPCA I+ GI RVVV DP V+GRG++ L + GI Sbjct: 64 SLLKEATLYVSLEPCSHYGKTPPCADLIVSKGIPRVVVGCMDPFPLVAGRGIRKLEEAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITGF 177 V ++E E + + ++T + KR +ITLK A S D I G S P+T Sbjct: 124 DVTVGVLEEECRELIRRFVTLNIRKRPYITLKWAQSADGFIDRLRQEGSPAVLSTPLTSM 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 VH +RA+ AILVG T L D+P LT R +P+R+++D L + K+ Sbjct: 184 Y----VHKMRAEYKAILVGRRTALLDNPSLTTR--NWYGPNPLRLVIDRKLTLPRELKLF 237 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295 AP ++ TE V A R+ N++ D L +++ +L R + SLLVEGG Sbjct: 238 DGT--APTLVFTEE---VPAECLRQTNVDYQVLDFSQDILPQIMQVLYERKIQSLLVEGG 292 Query: 296 ---AAVAHSF 302 A+V + F Sbjct: 293 RLSASVVYRF 302 >gi|227504400|ref|ZP_03934449.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium striatum ATCC 6940] gi|227199048|gb|EEI79096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium striatum ATCC 6940] Length = 344 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 117/343 (34%), Positives = 172/343 (50%), Gaps = 37/343 (10%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ +G ++G G T G PHAEV AL+EAG ARG A VTLEPC+H Sbjct: 21 GTTSPNPPVGAVILDAEGNLVGTGATQPVGGPHAEVMALQEAGSSARGGIAVVTLEPCNH 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI----F 137 GR+ PCA+ +I I +V DP+ +G G Q L GI V ++ E+ ++ Sbjct: 81 TGRTGPCAEALIAADISQVYFLHPDPNGVAAG-GAQTLRAAGIEVAQI-EAPAELPVSDA 138 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L +LT R H+TLK A + D + S ITG ++ VH+ RA+ DAI++G Sbjct: 139 LIPWLTSLRLGRPHVTLKFAQTLDGFTAASDGTSQWITGEHAREWVHVDRARRDAIIIGT 198 Query: 198 GTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GT LAD+P LT R L+E P R V+I N + Sbjct: 199 GTALADNPSLTARFPDGTLREQQPRR-----------------------VVIGQRNLEDA 235 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + + + Y ++ L L G +LVEGGA +A +F+N+ VD++ Y Sbjct: 236 GAASSHLRELG--YDQFANIDDALISLYEAGARDVLVEGGAGLASAFLNAGYVDAVQAYI 293 Query: 316 SQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYI 355 + +++GEG + P+ + + + F V G DV +EY+ Sbjct: 294 APLLLGEGRGVLAHPVAQTLQDARRFQRVGTTVLGDDVLIEYV 336 >gi|305667257|ref|YP_003863544.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170] gi|88709304|gb|EAR01537.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170] Length = 350 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 109/333 (32%), Positives = 169/333 (50%), Gaps = 25/333 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D +M AL ++ +G T+ NP V ++V + +I G T+ G HAEV A+ Sbjct: 2 SLDHLYMQRALLLAKNGLGTTAPNPMVGAVLVCNEKIIAEGYTSPYGGAHAEVNAINSVE 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +++ +T YVTLEPCSH+G++PPCA II+ I RVV+ D +V+G+G + L + Sbjct: 62 DKSILANSTLYVTLEPCSHHGKTPPCADLIIKHNIPRVVIGTLDSHEKVAGKGKRMLEES 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG------MAGCGSVPIT 175 G V ++E+ K +LT KR +I LK A + D I A IT Sbjct: 122 GCKVTLGVLENACKEHHKRFLTFHQRKRPYIILKWAQTSDGFIAPDKNKRKAKAEPYWIT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 S+ VH R++ AILVG TVL D+P+L R SP+RI++D + + Sbjct: 182 NSYSRQIVHKWRSEEQAILVGTKTVLDDNPKLNTR--SWAGTSPIRIVMDKKLNIGSNHH 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT-----ILVGRGVTSL 290 ++ + +P I++T+N D K+ NI Y + D K T +L R + S+ Sbjct: 240 VLDVS--SPTIVITQNTDE------DKRAANIAY-EVIDFSKNQTTQICQVLYKRNIISV 290 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L+EGGA +FI+ L D ++ + +G Sbjct: 291 LIEGGAKTLQTFIDENLWDEARVFTGKNNFKKG 323 >gi|146297767|ref|YP_001192358.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae UW101] gi|146152185|gb|ABQ03039.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae UW101] Length = 349 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 106/336 (31%), Positives = 167/336 (49%), Gaps = 20/336 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +++ + +R G T NP V +IV + +IG G G PHAEV A+ +++ Sbjct: 6 KYIKRCIELARNGFGTTYPNPMVGSVIVYEDTIIGEGWHKKAGEPHAEVNAVRSVKDKSL 65 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + AT YV+LEPCSH+G++PPC II I VVV DP+ +V+GRG++ L + G + Sbjct: 66 LKKATIYVSLEPCSHFGKTPPCCDLIIANKIPNVVVGTVDPNEKVAGRGIKKLIEAGANV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITGFISK 180 V ++E E + T +KR +I LK A S D + V IT S+ Sbjct: 126 VVGILEDECNELNKRFFTFHQKKRPYIILKWAESLDGFLAPEKEIDQERKPVWITNQYSR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH R++ AIL G TV+ D+P+L R ++P+R+ILD + ++S DS + + Sbjct: 186 QLVHKWRSEEQAILAGTQTVVDDNPKLNVR--DWSGNNPVRVILDQNNRISKDSFVFDES 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + V +EN F K I D ++ +L +L + S+++EGG Sbjct: 244 VKTIVFTKSENMISTENTIFEK-----IDFDKNSIENILAVLYQHQIQSIIIEGGRQTLE 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 SFIN + D ++I IG+ + L+K Sbjct: 299 SFINENIWDE-----ARIFIGKNTFKKGTKAPELQK 329 >gi|88803651|ref|ZP_01119175.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P] gi|88780384|gb|EAR11565.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P] Length = 354 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/360 (30%), Positives = 190/360 (52%), Gaps = 28/360 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEE 66 +++ L+ ++ +G T NPSV +IV G+++G G TA G HAEV A+ E + Sbjct: 6 QYIQRCLQIAKNGIGTTRPNPSVGAVIVCKGVIVGEGFTAAYGGNHAEVNAVNSVEHKKL 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +T YVTLEPCSH+G++PPCA II+ I+RVV+ D + V+G+G++ L G++V Sbjct: 66 LVESTLYVTLEPCSHFGKTPPCADLIIKYNIKRVVIGCVDTNSLVAGQGIERLKSAGVVV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFISKNQ 182 ++E+E + + Q +KR +I LK A ++D + +V I+ S+ Sbjct: 126 TVGVLEAECRKHHKRFFVVQEKKRPYIILKWAETKDGFVAPLSKDAVAPKFISNRYSQQL 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+Q AILVG TVL D+P+L R ++P+R++LD + + + ++ Sbjct: 186 VHKLRSQEHAILVGKNTVLEDNPKLNVR--SWSGNNPIRVVLDSALGIPESAHVFDGSIT 243 Query: 243 APVI---IVTENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEG 294 VI I + AF K N+I+ + D K + +L+ V SL+VEG Sbjct: 244 TIVITGKIHGHEEVKTKKYAFNK---NLIF-EPIDFSKNVAEQICVVLLKHQVQSLIVEG 299 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G +FI+ L D +++ +G+ + ++ L+KN+ ++++ D+ +Y Sbjct: 300 GTQTLATFISENLWDEALVF-----VGDHSFDAGVKAPRLDKNY---KKEHVLEDLIKKY 351 >gi|329956196|ref|ZP_08296876.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056] gi|328524670|gb|EGF51731.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056] Length = 347 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/330 (33%), Positives = 167/330 (50%), Gaps = 29/330 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + + NP V ++V DG +IG G G HAEV A+ E Sbjct: 3 EEKYMRRCIQLAQNGLCNAAPNPMVGAVVVCDGKIIGEGYHVRCGEAHAEVNAIRSVKEP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E + + ++T R +ITLK A S D I G P+ + ++ Sbjct: 123 EVTVGVLEQECRNLIRRFITFHTLHRPYITLKWAESADRYIDNFREGGKPVILSNPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ AI+VG T D+P LT R Q SP+RI++D KLS + + Sbjct: 183 LVHKKRAEHSAIMVGTRTAELDNPGLTVR--NWQGRSPVRIVIDRKQKLSPELHLF---- 236 Query: 242 LAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTSLLVE 293 D V L F +K NI I D R L +++ L +G+ SLLVE Sbjct: 237 ----------DGNVRTLVFTEKPHSPQSNIEYIPIDFRQNILPQIMEYLYAQGLQSLLVE 286 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GG + SFI++ L D + S ++ G Sbjct: 287 GGNILLQSFIDAELWDEAFVEESPSMLFSG 316 >gi|259502164|ref|ZP_05745066.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041] gi|259169782|gb|EEW54277.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041] Length = 352 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 172/348 (49%), Gaps = 31/348 (8%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83 T NP V ++VK+G V+ G T G HAE AL A +A GAT YVTLEPC+HYG Sbjct: 21 TWRNPQVGAVVVKNGHVLATGHTQPYGGSHAERDALSRLAPGQAAGATLYVTLEPCNHYG 80 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 + PPC Q II GIRRVVV DP V+G+G+ L Q GI +V + + Y Sbjct: 81 KQPPCTQLIINSGIRRVVVAQLDPHALVTGKGVANLRQHGIEVVTGVGAQQAAQVNPHYD 140 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +TLK A+S D + IT +VH RA I++G T + Sbjct: 141 FFYRHHRPWVTLKQALSLDGRVSAGPGQRTAITNQAVYRRVHQERAGFQGIVIGSTTAIV 200 Query: 203 DDPELTCRLNGLQ-EHSPMRIILDPHFKLS--LDSKIIKTALLAPVIIVTENDDPVLALA 259 DDP L L +Q H P+RI+LD +L+ D ++ LAP + TEN AL Sbjct: 201 DDPTL---LPSVQLAHLPIRIVLDRRGRLADYPDLRLFNDG-LAPTWVFTEN----AALP 252 Query: 260 FRKKNIN--IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 R ++ DC + ++ +L GV SL VEGG + ++F + LV+ ++ Y S Sbjct: 253 DRLGPWARVLVLPDC-SVPAVVQVLAEEGVQSLYVEGGPTIQNAFARAGLVEEVLTYLSP 311 Query: 318 IVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 +++G+ G+P +P E + D LE +G N+ + E Sbjct: 312 VMLGQEGVPGFAPPETWKFQ-------------DQQLELLGNNVRIAE 346 >gi|148242850|ref|YP_001228007.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. RCC307] gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. RCC307] Length = 366 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/289 (35%), Positives = 154/289 (53%), Gaps = 12/289 (4%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C+++ +G ++G G G PHAEV AL AG+ A+G T YVTLEPC H Sbjct: 25 GRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMALRRAGDRAKGGTLYVTLEPCCH 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+PPC++ +I G+RRVV+ + DPD RV+G G+ L G+ ++ + ++E A Sbjct: 85 HGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLKAAGMEVISGVRQAEAAQQNRA 144 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R LK A+S D + S I+ +++ VH LRA DA++VG GTV Sbjct: 145 FLHRIRTGRPWGLLKWAMSLDGRTALPNGASQWISSPPARSWVHHLRAAVDAVIVGGGTV 204 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-- 258 AD+P LT R G + P+R++L L D+++ A ++ + P A Sbjct: 205 RADNPLLTSR--GQRSPEPLRVVLSRTLDLPSDAQLWDQT-SATTLVAHGPEAPAQARQQ 261 Query: 259 --AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + I ++ C + LL L RG +L E G +A + I S Sbjct: 262 LDQLGVERIELVAC---EPAALLEALAQRGCNRVLWECGPQLAAAAIAS 307 >gi|320546418|ref|ZP_08040733.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC 9812] gi|320448803|gb|EFW89531.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC 9812] Length = 351 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 169/327 (51%), Gaps = 28/327 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64 D +M A+ ++ T TNP V +IVKD VI RG G HAE A+ + Sbjct: 2 DKNYMLQAIEEAKRGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQTP 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EE +T YVTLEPC H G+ PPC Q I+E GI++VV DP+ V+G+G+ +L ++GI Sbjct: 62 EELFNSTLYVTLEPCHHGGKQPPCTQAIVEVGIKKVVAGQFDPNPLVAGKGVAFLKEQGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E + Y KR ++ LK AVS D I + G + +T + V Sbjct: 122 EVVTHVLEEEARALNKHYNVYYERKRPYVVLKQAVSLDGKIAVLGKRTA-LTDDETSRFV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKL--SLDSKIIKT 239 H R AILVG TVL D+P RL G + P+R+ILD ++ LD +I + Sbjct: 181 HDERDDFHAILVGADTVLIDNP----RLLGSETSFCPPVRVILDEKGRVFDQLDLQIFE- 235 Query: 240 ALLAPVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +N PV + RK K++ +I ++ +L +L + + S+ VEG Sbjct: 236 ----------DNSAPVYIFSSRKVSDLPKHVTVIDLPEFSIENILQVLYEKKLQSVYVEG 285 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 GA+V +F+ S L D II Y + +IG Sbjct: 286 GASVHDAFLESGLFDEIISYVTPKLIG 312 >gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis C6786] Length = 246 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 94/244 (38%), Positives = 138/244 (56%), Gaps = 7/244 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++A Sbjct: 3 SESDFTHMQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGGDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A S D +A S ITG + Sbjct: 123 DAGIDVRCGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+L R G+ P R+++D + L +++++ Sbjct: 183 RDDGHKWRARACAILTGIGTVREDDPQLNVR--GVDTPRQPRRVLIDSRLDIPLSARLLE 240 Query: 239 TALL 242 L Sbjct: 241 GGSL 244 >gi|300767117|ref|ZP_07077029.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494936|gb|EFK30092.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 355 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/320 (32%), Positives = 169/320 (52%), Gaps = 5/320 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+L RL + + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLAVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVLIGNWTP-AAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPS 327 +D + Y + ++IG G+P+ Sbjct: 302 IDEWVSYIAPMMIGGTGLPA 321 >gi|260665250|ref|ZP_05866099.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii SJ-7A-US] gi|313472797|ref|ZP_07813285.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153] gi|260560987|gb|EEX26962.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii SJ-7A-US] gi|313448878|gb|EEQ68026.2| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153] Length = 352 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 19/345 (5%) Query: 7 DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62 D FM AL + R+H T TNP V ++VKD V+ G G HAE A+ + Sbjct: 5 DEDFMGLALTEASKGRYH---TWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISKL 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 62 TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKAH 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V ++ E K Y+ ++TLK A+S D+ + ITG + Sbjct: 122 NISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPN-KRIQITGNAASQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH RA AI+VG T L D+P L + Q+H P+R+++D +L + + Sbjct: 181 RVHQERADYQAIMVGSSTALIDNPTLLTSIK--QDHPPIRLVIDRRGRLLNQQLTLFSDN 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP I T+N P LA ++ + D L ++L IL V S+ VEGG A+ S Sbjct: 239 RAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMKS 296 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345 F+ +L +I Y S +G + +G+ + +N ++ +Y Sbjct: 297 FVEEKLAQELITYFSPTFLGSNAL-----DGFEITENLKLIQPNY 336 >gi|298374645|ref|ZP_06984603.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19] gi|298269013|gb|EFI10668.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19] Length = 359 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 107/312 (34%), Positives = 167/312 (53%), Gaps = 19/312 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ +E Sbjct: 5 EEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIASVKDE 64 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + G+ Sbjct: 65 SLLTDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLREAGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-SVPITGFISKNQ 182 +V +ME E + A++T Q + R +I LK A S+D I S P+T S Sbjct: 125 EVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLSSPET 184 Query: 183 ---VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LR++ AI+VG T L D+P L R +SP+R++LD + +++ Sbjct: 185 SRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYRLLNG 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 + + +I TE + ++N+ I D ++++L L R + SLLVEGG Sbjct: 243 S--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGGTQ 294 Query: 298 VAHSFINSRLVD 309 + +SF+ + + D Sbjct: 295 LINSFVEADVWD 306 >gi|255532071|ref|YP_003092443.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM 2366] gi|255345055|gb|ACU04381.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM 2366] Length = 353 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/333 (33%), Positives = 164/333 (49%), Gaps = 27/333 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66 +M L + +G S NP V C+IV DG +IG G A G HAEV A+ Sbjct: 6 YMQRCLELAAMGMGNVSPNPMVGCVIVSDGKIIGEGYHARFGEAHAEVNAINSVVHNYGN 65 Query: 67 -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 ATAYV+LEPC+H+G++PPCA +I+ I++VV+ DP V+G+G++ L Sbjct: 66 TAETLLAAATAYVSLEPCAHFGKTPPCADLLIKHRIKKVVIGNTDPFDGVNGKGIEKLKN 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V ++E+E + TR ++ +I LK A S + I+G +K Sbjct: 126 AGIEVVSGVLEAECSQLNRRFFTRIGQQHPYIILKWATSANGYFAPENTTQQWISGPEAK 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH R + DA+LVG T +AD+P LT R +P+RI++D H ++ I Sbjct: 186 KLVHKWRTEEDAVLVGRLTAMADNPRLTVR--EWYGRNPVRIVVDRHLQVPSSHHIYNKE 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-----RGVTSLLVEGG 295 A II E V NI + D++ L + + S+++EGG Sbjct: 244 --AKTIIFNEQKTDVQE--------NIHFIQMEDMQHYLPQKIAFQLYLMDIASVIIEGG 293 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 A V + FI +RL D ++RS V GIPSP Sbjct: 294 AQVLNQFIQARLWDEARVFRS-AVSWPAGIPSP 325 >gi|148240028|ref|YP_001225415.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. WH 7803] gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. WH 7803] Length = 372 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 115/314 (36%), Positives = 172/314 (54%), Gaps = 14/314 (4%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ G+++G G A G PHAEV AL +AG ARG T VTLEPC H Sbjct: 27 GHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVGALAQAGAAARGGTIIVTLEPCCH 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+PPCA +I+ GI RVVV + DPD RV+G GLQ L G+ ++ ++E+E A Sbjct: 87 HGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQRLRDAGVEVISGVLEAEAAHQNLA 146 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 ++ R R LK A+S D ++ S I+G +++ VH LRAQ DA++VG GTV Sbjct: 147 FVYRVRTGRPWGVLKWAMSLDGRTALSNGASQWISGPSARSWVHRLRAQCDAVIVGGGTV 206 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 ADDP LT R GL+ P+R++L L +++ + +AP ++V D P A Sbjct: 207 RADDPLLTSR--GLRSPEPLRVVLSRSLDLPDQAQLWDQS-VAPTLVVHGLDAPAGA--- 260 Query: 261 RKKNINIIYCDCRDLK-----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + ++ + ++L+ L+ +L RG +L E G +A + I V I Sbjct: 261 -RSRLDAVGVQRQELQACEPEALMAVLAQRGCNRVLWECGPGLAAAAIQQGCVQDIAAVI 319 Query: 316 SQIVIGEGGIPSPL 329 + ++G +PL Sbjct: 320 APKLLGGEPARTPL 333 >gi|238855788|ref|ZP_04646080.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3] gi|282934748|ref|ZP_06339990.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|238831564|gb|EEQ23909.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3] gi|281301189|gb|EFA93491.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] Length = 359 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 170/345 (49%), Gaps = 19/345 (5%) Query: 7 DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62 D FM AL + R+H T TNP V ++VKD V+ G G HAE A+ + Sbjct: 12 DEDFMGLALTEASKGRYH---TWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISKL 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 69 TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKAH 128 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V ++ E K Y+ ++TLK A+S D+ + ITG + Sbjct: 129 NISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPN-KRIQITGNAASQ 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH RA AI+VG T L D+P L + Q+H P+R+++D +L + + Sbjct: 188 RVHQERADYQAIMVGSSTALIDNPTLLTSIK--QDHPPIRLVIDRRGRLLNQQLTLFSDN 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP I T+N P LA ++ + D L ++L IL V S+ VEGG A+ S Sbjct: 246 RAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMKS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345 F+ +L +I Y S +G + +G+ + +N ++ +Y Sbjct: 304 FVEEKLAQELITYFSPTFLGSNAL-----DGFEITENLKLIQPNY 343 >gi|332881258|ref|ZP_08448908.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680634|gb|EGJ53581.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 358 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 119/336 (35%), Positives = 171/336 (50%), Gaps = 24/336 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAG 64 D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+ Sbjct: 4 DEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRFVRNP 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L + GI Sbjct: 64 ELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQESGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---------SVPI 174 V ++E+E ++T R +ITLK A S D + S P Sbjct: 124 EVTVGVLEAECLALNRRFITFHTHHRPYITLKWAESADGFMDSLRTDYEKEKPYAFSTPY 183 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T + VH RA+ AILVG T LAD+P L R+ SP+R+++D L Sbjct: 184 TRML----VHRCRAEHQAILVGRQTALADNPSLNLRM--WPGKSPLRLVIDRRGDLPGHL 237 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLV 292 + V + + VL ++ + + D RD L ++L L V SLLV Sbjct: 238 ALFNDGAETRVYLDVLS---VLPPYGKQTGVTCVRLDFSRDILPQILDDLYRLSVQSLLV 294 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 EGG + SFI++ L D I + +S + + E G+PSP Sbjct: 295 EGGHRLLESFISAGLWDEIRVEQSPVFLKE-GVPSP 329 >gi|307326834|ref|ZP_07606026.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] gi|306887597|gb|EFN18591.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] Length = 369 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 167/327 (51%), Gaps = 11/327 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 ++ +A+ M A+ + +G TS NP V C+I+ G V+G G G PHAEV AL Sbjct: 2 ATAAEAQAMRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHALR 61 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG+ ARG TA VTLEPC H GR+ PC+Q +I GI RV V DP + G + Sbjct: 62 AAGDRARGGTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAAA 121 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ E + +LT R + K A + D A S IT S+ Sbjct: 122 GVEVEAGLLAEEAEAVNEPWLTAMRRGRPFVLWKFAATLDGRSAAADGTSRWITSPESRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA++DA++VG GT ADDP L R G+ + P+R+++D + ++I+ A Sbjct: 182 DVHRLRAEADAVVVGSGTQRADDPHLAVRDREGVTQ--PLRVVVDTAATIKPGARILDDA 239 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 AP ++ D L R+ + + D + LL L GRGV S+L+EGG Sbjct: 240 --APTLLAVAEDASTAHLP-RRPGVETVRLPRADGGLAIPALLAELHGRGVRSVLLEGGP 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ + VD +I Y + +++G G Sbjct: 297 TLAGAFLAAGAVDKVIGYLAPVLLGAG 323 >gi|253571299|ref|ZP_04848706.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6] gi|251839252|gb|EES67336.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6] Length = 345 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 175/342 (51%), Gaps = 20/342 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++ Sbjct: 3 EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDK 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E + + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 123 EVTVGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ + Sbjct: 183 LVHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P I+ T P KKN+ + L +++ +L + + SLLVEGG+ + Sbjct: 241 --PTIVFTAEKHP------DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLL 292 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNF 338 SFI++ L D + + + + G + + + EK+F Sbjct: 293 QSFIDAELWDEVYIEKCPCKLNSGVKAPEISDNFSYSTEKHF 334 >gi|298386833|ref|ZP_06996388.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14] gi|298260507|gb|EFI03376.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14] Length = 345 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/342 (31%), Positives = 175/342 (51%), Gaps = 20/342 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++ Sbjct: 3 EEKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDK 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E E + + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 123 EVTIGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ + Sbjct: 183 LVHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 P I+ T P KKN+ + L +++ +L + + SLLVEGG+ + Sbjct: 241 --PTIVFTAEKHP------DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLL 292 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNF 338 SFI++ L D + + + + G + + + EK+F Sbjct: 293 QSFIDAELWDEVYIEKCPCKLNSGVKAPEISDNFSYSTEKHF 334 >gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM 5692] gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM 5692] Length = 384 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/361 (30%), Positives = 177/361 (49%), Gaps = 19/361 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M A+ G T+ NP V +I ++G V+ G G PHAEV+A+ +A G + Sbjct: 1 MQHAVELGETGFGRTAPNPCVGAVITRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 T +VTLEPC+H+GR+PPC + IIE GIR V + DP+ V G G +L +G+ V+ Sbjct: 61 SECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEVE 120 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E + + +L Q EKR + LK+A + D I S ++G ++ +VH L Sbjct: 121 VGILEPACRDLIADFLLWQQEKRPGVLLKLAATLDGKIATRSGHSAWVSGPEAREEVHGL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + D +LVG GT+ AD+P LTCR P+ +++ + D + I Sbjct: 181 RGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALVVTSRLPEAQDDLHLLRHRPQETI 240 Query: 247 IVTEND-------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT-SLLVEGGAAV 298 T +D D + AL R ++ + DL+ LT +G+ ++L EGG + Sbjct: 241 FWTTDDQSRTPQADALRALGCRIWDLPLTASGMLDLRAGLTHFFDQGLGHTILCEGGGRL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352 A + L D + LY + ++G+ + L G E + + R G+D+CL Sbjct: 301 ALALAEQGLADRLRLYLAPKILGDATAIN-LFSGRDELDMGQALPWRFTRSRQVGADMCL 359 Query: 353 E 353 E Sbjct: 360 E 360 >gi|260063122|ref|YP_003196202.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata HTCC2501] gi|88784691|gb|EAR15861.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata HTCC2501] Length = 350 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 113/343 (32%), Positives = 169/343 (49%), Gaps = 26/343 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M ++ R +G ++ NP V L+ +IG G T+ G PHAEV A+ + + Sbjct: 6 KYMLRCIQIGRNALGRSAPNPMVGALLTHGDTIIGSGYTSAFGGPHAEVNAIRSVADPGK 65 Query: 69 --GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +T YVTLEPC H+G++PPC IIE GIRRVVV + DP +V+G+G+ L + G V Sbjct: 66 LPDSTLYVTLEPCCHHGKTPPCTDRIIESGIRRVVVGLPDPHDKVAGQGIAQLREAGCQV 125 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFIS 179 + + ++ H +LT + R +I LK A S D + G ITG S Sbjct: 126 EVGVAADACREHHKRFLTLHEKGRPYIVLKWAQSPDGFLAPDPEVRGESTGPWWITGRES 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH R Q AILVG T ADDP+LT R P+R++LDP + +++ Sbjct: 186 RQLVHKWRTQESAILVGWRTAAADDPQLTSR--DWAGKDPLRVLLDPSGRAPEGLRLLDG 243 Query: 240 ALLAPVIIVTENDDPVLALA-----FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + P + V A F + + CR+L++ RGV S+LVEG Sbjct: 244 KV--PTLRVLHTGQQPTGSARVENIFLEPGPGFLRALCRELRE-------RGVLSILVEG 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 GA SF+++ L D ++ + GG+ +P G L N Sbjct: 295 GAHTLGSFLSAGLWDEARVFTGPRPL-NGGLRAPALSGRLVAN 336 >gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902] gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CC9902] Length = 349 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/345 (32%), Positives = 178/345 (51%), Gaps = 18/345 (5%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ + G ++G G A G PHAEV AL +AG+ A+G T VTLEPC H Sbjct: 13 GHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKGGTLVVTLEPCCH 72 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +G +PPCA +++ GI RVV+ ++DPD RV+G G+ L G+ ++ ++++E A Sbjct: 73 HGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEVMSGVLQAEAVFQNRA 132 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R TLK A+ D + S I+G +++ VH LR++SDA++VG GTV Sbjct: 133 FLHRVRTGRPWGTLKWAMGLDGRNALTNGESQWISGPMARQWVHQLRSKSDAVIVGGGTV 192 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV---TENDDPVLA 257 DDP LT R G + P+R++L +L +++ T LAP ++ D P + Sbjct: 193 RTDDPLLTSR--GRRMPEPLRVVLSRSMELPELAQLWDTT-LAPTLVAHGPESQDRPFPS 249 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 R + + + L+ L RG +L E G +A + I + + + Sbjct: 250 GPQR------LLLSASEPEPLMQELANRGCNRVLWECGPELAAAAIRQGCIQDVAAVVAP 303 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 ++ GG+P+ G L F + + GS + +G + Q Sbjct: 304 KLM--GGVPARTPLGDL--GFTAMDQVVAGSFLSPVPLGDDWLFQ 344 >gi|325846504|ref|ZP_08169419.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481262|gb|EGC84303.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 359 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/334 (33%), Positives = 161/334 (48%), Gaps = 25/334 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T NP V ++VKDG +I G G HAEV E Sbjct: 3 DKYYMKKCFDLAKNARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI V Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLS---LDSKIIKTAL 241 LR DAI+VG T++ D+P L R+ NG+ P+R+I+D + ++ D KI Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIENGI---DPVRVIVDTNLEIEKNYKDYKIFNLNS 237 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 I T + D+P ++N+I C + DL+ L+ L + S+LVEGG Sbjct: 238 DKKTYIATCKDTDNP---------DLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGG 288 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + + + F+ LVD I + S +IG SP Sbjct: 289 SILNYDFLEEGLVDKIYEFISPQIIGGFNSKSPF 322 >gi|319955752|ref|YP_004167019.1| riboflavin biosynthesis protein ribd [Cellulophaga algicola DSM 14237] gi|319424412|gb|ADV51521.1| riboflavin biosynthesis protein RibD [Cellulophaga algicola DSM 14237] Length = 351 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 111/322 (34%), Positives = 167/322 (51%), Gaps = 26/322 (8%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPC 79 +G T+ NP V +IV + +IG G T+ G PHAEV A+ ++ AT YVTLEPC Sbjct: 19 LGTTAPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAINAVADKNLLVNATIYVTLEPC 78 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138 SH+G++PPCA II+ I+ VVV + DP +V+G+G+Q L G V ++E+E + Sbjct: 79 SHHGKTPPCADLIIKHKIKNVVVGLLDPHEKVAGQGIQKLKDAGCTVTVGVLENECREHH 138 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVP--ITGFISKNQVHLLRAQSDA 192 +LT Q + R +I LK A + D I + P IT S+ VH RA+ A Sbjct: 139 KRFLTFQEKNRPYIILKWAETADGFIAPELALRTKEKQPFWITNTYSRQLVHQWRAEEQA 198 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIV 248 ILVG TVLAD+P+L R +P RIILD + K++ K IKT + ++ Sbjct: 199 ILVGTHTVLADNPKLDVR--SWTGKNPTRIILDRNLKINTTFHVVDKSIKTIIFTEILEE 256 Query: 249 TENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + V+ + KKNI C T L + + S+++EGG +FI L Sbjct: 257 SRYQSEVIYIPIDFKKNIASQIC---------TALYLQNIQSVIIEGGLQTLQTFIAENL 307 Query: 308 VDSIILYRSQIVIGEGGIPSPL 329 D +++ + + G+ +P+ Sbjct: 308 WDEARIFKGNSLF-KRGVKAPI 328 >gi|126696788|ref|YP_001091674.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9301] gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9301] Length = 364 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 104/360 (28%), Positives = 177/360 (49%), Gaps = 13/360 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 ++M A+ + TS NP V +I+ K+G +I G G PHAE A + Sbjct: 9 TKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAMAFNNLKND 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++ L + GI V Sbjct: 69 AKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKLLKEAGIQV 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + E A++ R K++ LK A+S D I + S IT S++ VH Sbjct: 129 NLGLCKKESLDLNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNDESRSLVHS 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+ DAI++G T+ D+P LT R G + P+R++ L S + + + Sbjct: 189 FRAEFDAIIIGGNTLRRDNPFLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCSKAKTL 246 Query: 246 IIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I + ++ L+ + + + D +L + IL RG +L E G +A + I Sbjct: 247 VIYDSSTANESYLSRIPKCVEVEKVLSDNPEL--ISKILAKRGCNKVLWECGPNLATAAI 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGKN 358 S + II + + ++G P + E+ ++ G+D+C++ + KN Sbjct: 305 QSNCIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLSNSQVSLIGNDICVKSLCKN 364 >gi|33861821|ref|NP_893382.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 362 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/319 (30%), Positives = 163/319 (51%), Gaps = 8/319 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M A+ + G TS NP V +I+ K+G +I G + G PHAE A + Sbjct: 8 DIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLKK 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +AR T YV LEPC H G++PPC II GI+RV V ++DPD R+SG+G++ L GI Sbjct: 68 DARDGTIYVNLEPCCHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGIK 127 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + + E K +++ + + ++ +K A+S D +G+ S IT S++ VH Sbjct: 128 VHLGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMDGRVGLKNGKSKWITNKDSRSLVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA DAI++G T+ DDP LT R G++ P+R++ L + S + L Sbjct: 188 SLRASFDAIVIGGNTLRKDDPFLTSR--GIRNPEPLRVVFTKTLNLPVKSNLWDCKLART 245 Query: 245 VII--VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ + D+ L I + D L L +L +G ++ E G +A S Sbjct: 246 LVVYDASTADEKFLKRIPEGVEIEKLSSDNPIL--LSNLLAKKGCNNVFWECGPKLATSA 303 Query: 303 INSRLVDSIILYRSQIVIG 321 + + + ++ + + ++G Sbjct: 304 MKAGCIQELMTFIAPKILG 322 >gi|108799353|ref|YP_639550.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS] gi|119868469|ref|YP_938421.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS] gi|126435011|ref|YP_001070702.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS] gi|108769772|gb|ABG08494.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS] gi|119694558|gb|ABL91631.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS] gi|126234811|gb|ABN98211.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS] Length = 333 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 107/304 (35%), Positives = 156/304 (51%), Gaps = 33/304 (10%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +I+ DG V G G T G PHAEV AL AG +A G TA VTLEPC+H Sbjct: 19 GGTYPNPPVGAVILDADGEVAGVGATQPPGGPHAEVMALRRAGRKAAGGTAVVTLEPCNH 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139 +GR+PPC ++ + VV V DP+ +G G L + G+ V + ++ L Sbjct: 79 HGRTPPCVDALLAAEVSAVVYAVPDPNPVAAG-GAARLGESGVTVTAGVLGDAVAGGVLR 137 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +L +Q + H+T K A S D A S IT ++ VH RA +DAI+VG GT Sbjct: 138 EWLHKQRTGKPHVTWKFATSVDGRSAAADGSSQWITSEAARTDVHRRRAVADAIVVGTGT 197 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 VL DDP LT RL L E P+R+++ ++S DS+++ NDD Sbjct: 198 VLVDDPVLTARLPDGSLAERQPLRVVVG-KREISSDSRVL-------------NDD---- 239 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + RD +++L L R T +++EGG +A +F+ + +D I+ Y + Sbjct: 240 -------SRTMVIRTRDPQEVLRALSDR--TDVILEGGPTLAGAFLRAGAIDRIVAYVAP 290 Query: 318 IVIG 321 I++G Sbjct: 291 ILLG 294 >gi|227514654|ref|ZP_03944703.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lactobacillus fermentum ATCC 14931] gi|227086963|gb|EEI22275.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lactobacillus fermentum ATCC 14931] Length = 345 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/310 (34%), Positives = 152/310 (49%), Gaps = 19/310 (6%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83 T NP V +IVKDG ++ G G HAE A+ + + E+ GAT YVTLEPC HYG Sbjct: 15 TWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAGATIYVTLEPCFHYG 74 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 + PPC+Q +I+ RVVV DP V G+G+ L GI V+ +++ + + Y Sbjct: 75 KQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVGLLKDQAEALNRHYF 134 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 ++R IT K A+S D + A + IT ++ VH RA AI+VG GTVLA Sbjct: 135 YFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRLVHQERADYHAIVVGAGTVLA 194 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIVTEN------DDPV 255 DDP L C L P+R+ILD + L + + T AP +VT N D P Sbjct: 195 DDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDASAPTWLVTTNRAATKVDWPA 252 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ + D +LL + SL VEGG AV + V+ +I Y Sbjct: 253 --------HVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVPVNQLITYL 304 Query: 316 SQIVIGEGGI 325 +IG+ G+ Sbjct: 305 DPQIIGDQGL 314 >gi|53711798|ref|YP_097790.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46] gi|52214663|dbj|BAD47256.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46] Length = 340 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83 S NP V +IV +G +IG G G HAEV A+ + + + +T YV+LEPCSH+G Sbjct: 16 SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ ++E+E + + ++ Sbjct: 76 KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200 T R +I LK A S D I + P+ + ++ VH RA+SDAI+VG T Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D+P LT R H+P+RI++D + L S + +D+ V L F Sbjct: 196 LLDNPALTVR--NWHGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239 Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 K+N+ I + + L ++L+ L R + SL++EGG + SFI S + D +I Sbjct: 240 TEHPRAGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299 Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 + +S ++ G+ +P + EK+F R Y + Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|228469568|ref|ZP_04054561.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3] gi|228308918|gb|EEK17593.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3] Length = 338 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 117/341 (34%), Positives = 170/341 (49%), Gaps = 27/341 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 7 TTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRSV 66 Query: 64 GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 EE RG AT YV+LEPC+HYG++PPCA+ I RVVV + DP +V GRG+ L Sbjct: 67 PEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDGRGVARL 126 Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPI 174 + GI V + I L+ +L Q R ++TLK A S D+ I A Sbjct: 127 REAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYIF 186 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIIL------DPH 227 + + + VH LR DAILVG T DDP LT R G Q P+R++ P Sbjct: 187 SSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSGCGGQ---PIRLLWCHSRLPRPE 243 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 ++ D+ LL P ++ D +++ + +++ LLT+L +G+ Sbjct: 244 LRMLQDATARTIILLPPTLMAQVPD------GQYPPHVSCL-ATTGEVRDLLTLLRSQGI 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SLLVEGGA V F++S L D + + + + + + G+P+P Sbjct: 297 ESLLVEGGAQVLQRFLDSGLYDELNVEHAPVELHD-GVPAP 336 >gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311] gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311] Length = 365 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/359 (32%), Positives = 183/359 (50%), Gaps = 16/359 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ G ++G G A G HAEV AL +AG A+ Sbjct: 11 WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC++ +I+ GI+RVVV + DPD RV+G G+Q L G+ ++ Sbjct: 71 GGTIIVTLEPCCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEVIT 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E A++ R R LK A+S D + S I+ ++ VH LR Sbjct: 131 GVLEAEAAHQNRAFIHRVQTGRPWGLLKWAMSLDGRTALPNGESQWISAPPARGWVHQLR 190 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A DA++VG GTV AD+P LT R G++ P+R++L L +++ T L + ++ Sbjct: 191 AGCDAVIVGGGTVRADNPLLTSR--GVRAPEPLRVVLSRSLDLPPQAQLWDTTLASTLLA 248 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 D P L + + ++ + D LL L RG +L E G ++A + Sbjct: 249 HGPGCADRP---LPEGPERLELLASEPLD---LLHALAPRGCNRVLWECGPSLAAQAVKQ 302 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 V + + + ++G +PL E F + + S + E++G +L L L Sbjct: 303 GCVQELAVVIAPKLLGGTLARTPLG----ELGFSAMDQVIPLSALTAEWLGCDLLLGAL 357 >gi|289675578|ref|ZP_06496468.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. syringae FF5] Length = 194 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 86/188 (45%), Positives = 115/188 (61%), Gaps = 1/188 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 126 ISVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSA 185 Query: 183 VHLLRAQS 190 V LRA S Sbjct: 186 VQRLRAPS 193 >gi|60680029|ref|YP_210173.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis NCTC 9343] gi|60491463|emb|CAH06213.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis NCTC 9343] Length = 340 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83 S NP V +IV +G +IG G G HAEV A+ + + + +T YV+LEPCSH+G Sbjct: 16 SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ ++E+E + + ++ Sbjct: 76 KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200 T R +I LK A S D I + P+ + ++ VH RA+SDAI+VG T Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D+P LT R H+P+RI++D + L S + +D+ V L F Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239 Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 K+N+ I + + L ++L+ L R + SL++EGG + SFI S + D +I Sbjct: 240 TEHPRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299 Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 + +S +I G+ +P + EK+F R Y + Sbjct: 300 IEKSDKLI-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803] gi|2833460|sp|Q55158|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803] Length = 368 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/326 (31%), Positives = 167/326 (51%), Gaps = 3/326 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M L ++ +G T+ NP V +IV+ ++G+G G PH E+ AL EAG+ Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC+H GR+PPC + II+ GI +VVV + DP+ V+G+G+ L Q GI V Sbjct: 64 AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123 Query: 127 DRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E E L+ A+ R +R K A++ D I A S +T +++ VH Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+Q A+++G TV D+P LT +G+ E +P+R++L L +++++ + + Sbjct: 184 LRSQCQAVIIGGNTVRRDNPLLTN--HGVGEVNPLRVVLSRSLDLPIEAQLWDQDVAKTL 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + D K + + + ++ L R +L E G +A I Sbjct: 242 VITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGGILAAEAIAM 301 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEE 331 V + + + +IG P+P+ E Sbjct: 302 GTVQKVHAFLAPKIIGGVAAPTPVGE 327 >gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9312] gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9312] Length = 364 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 8/356 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + G TS NP V +I+ K+G +I G G PHAEV A +E Sbjct: 10 KWMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKKEV 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + YV LEPC H+G++PPC +I GI+++ + + DPD RVSG+G++ L Q GI V Sbjct: 70 KDGYMYVNLEPCCHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIKVH 129 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E A++ R + ++S LK A+S D IG+ S IT S++ VH Sbjct: 130 LGLCKKESLELNKAFIYRTITEKSFGVLKWAMSIDGRIGLKNGKSKWITNKDSRSLVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DAI++G T+ D+P LT R GL+ P+R++ L S + ++ Sbjct: 190 RTEFDAIIIGGNTLRQDNPLLTTR--GLKNPEPLRVVFTKTLDLPPKSNLWDCDEAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L + + + + + + +L RG +L E G +A S + S Sbjct: 248 IYDSSTANEKFLTNIPQCVEVEKVSSDNPELISKLLAKRGCNKVLWECGPKLATSAVKSD 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 ++ II + + ++G +PL + E+ ++ SD + IG ++C++ Sbjct: 308 CINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKL----SDSQVSLIGNDICVK 359 >gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans BC] gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans BC] Length = 370 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 185/365 (50%), Gaps = 20/365 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA--- 63 A F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A Sbjct: 5 APFITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAAS 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L G Sbjct: 65 GNDVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAG 124 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ L+ + +R V + +K A S D + +A S IT ++ Sbjct: 125 IDVQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ A+L GIGTVL DDP L R P +++D + L +++ Sbjct: 185 GHAWRARACAVLTGIGTVLEDDPLLNVR-EVATPRQPHLVVVDSRLQTPLGARLFDVPGR 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAV 298 V I + P A A R + +I + R DL +L L GV L +E G + Sbjct: 244 R-VFIYAADGPPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 SF+ LVD ++LY + +++G G G+ S G L+ VR ++ G ++ +G Sbjct: 303 NGSFLREGLVDELLLYLAPLLLGSGAHGLAS---WGPLQALADGVRMEFHG----MQQLG 355 Query: 357 KNLCL 361 +L L Sbjct: 356 PDLRL 360 >gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans K601] gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans K601] Length = 370 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 185/365 (50%), Gaps = 20/365 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA--- 63 A F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A Sbjct: 5 APFITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAAS 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L G Sbjct: 65 GNDVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAG 124 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++ L+ + +R V + +K A S D + +A S IT ++ Sbjct: 125 IDVQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ A+L GIGTVL DDP L R P +++D + L +++ Sbjct: 185 GHAWRARACAVLTGIGTVLEDDPLLNVR-EVATPRQPHLVVVDSRLQTPLGARLFDVPGR 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC-DCR---DLKKLLTILVGRGVTSLLVEGGAAV 298 V I + P A A R + +I + R DL +L L GV L +E G + Sbjct: 244 R-VFIYAADGHPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 SF+ LVD ++LY + +++G G G+ S G L+ VR ++ G ++ +G Sbjct: 303 NGSFLREGLVDELLLYLAPLLLGSGAHGLAS---WGPLQALADGVRMEFHG----MQQLG 355 Query: 357 KNLCL 361 +L L Sbjct: 356 PDLRL 360 >gi|295698401|ref|YP_003603056.1| riboflavin biosynthesis protein RibD [Candidatus Riesia pediculicola USDA] gi|291157057|gb|ADD79502.1| riboflavin biosynthesis protein RibD [Candidatus Riesia pediculicola USDA] Length = 373 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 101/334 (30%), Positives = 165/334 (49%), Gaps = 40/334 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FMS A+ ++ TS NP+V C+IV++ ++G + G HAEV A+++AG Sbjct: 5 DRQFMSRAIFLAKKGKFTTSPNPNVGCVIVQNNRIVGESYHSKTGESHAEVLAMKKAGHF 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC+HYG +PPC +I I ++ V + DP+ +VSG+ L L + G+ + Sbjct: 65 LKGATVYVTLEPCNHYGLTPPCVDELINAKISKIFVSMTDPNPKVSGKSLIKLKKSGVQV 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVH 184 + +++ E + ++ R + +IT+K+A S +I + + I+ + S+ V Sbjct: 125 ISGLLKDESEKINLGFIKRMKQGLPYITIKMATSINSKVIPINFEKNKWISSYKSRQDVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSLD 233 +RAQS A+L T+++DD L R N + P+RI++D K+ + Sbjct: 185 EIRAQSSAVLTTGSTIVSDDSRLNVRWNDFSDELKNIYPEKEIRQPVRIVIDTKNKVHEN 244 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFR--------KKNINIIYCDCR-----DLKKLLT 280 KI+ T P FR KKN+ DL + Sbjct: 245 HKIVNT--------------PGECWLFRSQFSKKRWKKNVKEFSTKLDSEGRIDLIYTMK 290 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + R + S+L+E G A S ++ L D IILY Sbjct: 291 QIARRKINSILIESGPTFASSLLSLNLFDQIILY 324 >gi|327405290|ref|YP_004346128.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM 16823] gi|327320798|gb|AEA45290.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM 16823] Length = 347 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 172/345 (49%), Gaps = 43/345 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M AL+ ++ + NP V +IV + +IG G G HAEV A+ Sbjct: 2 NLDEKYMLRALQLAKSGGISVAPNPLVGAVIVHNQQIIGEGYHQKYGEAHAEVNAVNSVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +++ +T YVTLEPCSH+G++PPCA ++ +RVV+ DP V+GRG++ L Sbjct: 62 DKSLLSESTIYVTLEPCSHFGKTPPCADLLVHSQFKRVVIAQIDPFSEVAGRGIEKLKNA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV----------SQDNMIGMAGCGS 171 GI VD ++ESE K ++T +KR ITLK A SQD IG+ S Sbjct: 122 GIQVDCGILESEAKELNKRFITFHTKKRPFITLKWAQTKDGFIDRDRSQDKEIGINWI-S 180 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 P T I+ H +R+ AILVG T+ D+P LT R+ +P+RII+DP+ K Sbjct: 181 QPETQVIT----HQMRSTEQAILVGWKTIQNDNPSLTTRV--FTGPNPIRIIIDPNLKAP 234 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---CDCRDLKKLLTILVGRGVT 288 ++ I L V TE +K IN I + D K +L L + Sbjct: 235 KNATIFTDGLKTVVFNKTE-----------EKTINSIQYVRLESIDSKSILRKLHELQIN 283 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPL 329 S+++EGGA FI+S D + I++GE GI +P+ Sbjct: 284 SVIIEGGAFTLTQFIDSSNWDEAL-----IIVGENQFKTGIKAPI 323 >gi|299822452|ref|ZP_07054338.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601] gi|299815981|gb|EFI83219.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601] Length = 394 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 110/323 (34%), Positives = 171/323 (52%), Gaps = 10/323 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66 ++M+ A++ +R G T NP V +IVK +IG+G A G HAEV A + EE Sbjct: 28 KWMAIAIKEARKGRGKTYKNPLVGAVIVKADRLIGKGYHASYGDVHAEVNAFQNVSNPEE 87 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + ++ YVTLEPC+H+G+ PPC + I+E GI V V D + V G+G+ +L GI V Sbjct: 88 TKHSSIYVTLEPCAHHGKQPPCCEKIVEMGIEHVYVAQLDSNPLVRGKGVAYLEAHGIKV 147 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + A+ +R +TLK AV+ D + +T + V Sbjct: 148 TIGVLEKEAEQLNPAFHFFHRHRRPLVTLKQAVTIDGKTNSSAASRTYLTDEKTSEDVQQ 207 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244 LR S AILVG TVL DDP LT R N + + P+RI+LD + ++D K + LA Sbjct: 208 LRMGSQAILVGSETVLIDDPALTIRSN-VVPYPPVRIVLDRRGR-TVDQKFQLWRDGLAE 265 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + T N +P + A +++ + +K++ IL G+ SL +EGGAA+ +F+ Sbjct: 266 TWLFTGN-EPDINFA---EHVRVFVDPDWTTEKVIRILAEEGIQSLCIEGGAAIHDAFLA 321 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 + VD I+ Y + ++G P+ Sbjct: 322 AGKVDRIVSYVAPYLLGGNARPA 344 >gi|189219671|ref|YP_001940312.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum infernorum V4] gi|189186529|gb|ACD83714.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum infernorum V4] Length = 376 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 30/342 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M AL+++ GLTS NP+V ++VK+G +IGRG G HAE++A+E+A Sbjct: 23 SPEDRYWMKEALKWALLGEGLTSPNPAVGAVLVKEGTLIGRGYHRKAGQAHAEIEAIEDA 82 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 GE G+T YVTLEPCS +G++PPC + I++ I RVV DP+ R R ++ L Sbjct: 83 KKRGESVAGSTLYVTLEPCSSWGKTPPCTERIVKEKISRVVASSPDPNPRNKPRAVELLP 142 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-ITGFIS 179 G+ + E + R + + + KIA++ D + AG G I+G + Sbjct: 143 SLGVDFSWEILEEALFLNRGFYHRILTGKPWVIGKIAMAIDGSLS-AGVGEERWISGIAA 201 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR +DAIL+G T D+P LT RL +DP K+ I+ Sbjct: 202 RTVAHRLRMIADAILIGAQTARTDNPRLTIRL------------VDPKGKIQPWRVIVSR 249 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + P + D AF+++ + + +++L L R V LLVEGGA V Sbjct: 250 SGNLPGDLFLFTD------AFKERTLLFVKMPW---ERVLGELGSRDVGILLVEGGAEVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 H I + + + S ++IG+ PLE+ + +F+ V Sbjct: 301 HQLIKEGWIQEVSFFLSPLIIGK----QPLEDSSTDASFLSV 338 >gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC 43553] gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC 43553] Length = 383 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 105/318 (33%), Positives = 160/318 (50%), Gaps = 15/318 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M AL + + T+ NP V C+IV+DG ++G G T G PHAE++AL Sbjct: 4 PSESDDIFWMRRALALAESVLYTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALR 63 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A E GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 64 DAESRQEAVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLAR 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + E E +++R + +K+A S D + S ITG Sbjct: 124 LRAAGIQVTTGVCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGP 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKI 236 ++ H RA+S +L G+GT+L DDP L R G+Q P + ++D F + D+++ Sbjct: 184 EARADGHHWRARSCVVLTGMGTILKDDPLLNVR--GVQTPRQPRKAVVDGLFVIPEDARL 241 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLL 291 A VI+ T +D A +KN ++Y DL ++ + Sbjct: 242 FDGAQ---VIVFTAREDAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVH 298 Query: 292 VEGGAAVAHSFINSRLVD 309 VE GA ++ + + + VD Sbjct: 299 VEAGAGLSGALVAAGCVD 316 >gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2] gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2] Length = 369 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 108/325 (33%), Positives = 166/325 (51%), Gaps = 8/325 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA--- 63 A FM+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A Sbjct: 5 AHFMNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMALRDAAAK 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G Sbjct: 65 GNDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ +E + + +R + + +K A S D + + S IT ++ Sbjct: 125 VDVEIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWITSAAARAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ IL GIGTVL D+P + R + P ++D + LD+ ++K Sbjct: 185 GHAWRARACTILTGIGTVLEDNPRMNVR-DVDTPRQPRIAVVDSKLDIPLDAHVLKAPSG 243 Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + + + AL A I++ + DL +L L RG L VE G + Sbjct: 244 CLIYTCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVEAGFKLNG 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325 S I LVD ++ Y++ ++G G + Sbjct: 304 SLIREGLVDELLFYQAPKLLGTGAM 328 >gi|6226765|sp|O24750|RIBD_CORAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|21914864|dbj|BAA20053.1| ribG [Corynebacterium ammoniagenes] Length = 337 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 113/310 (36%), Positives = 156/310 (50%), Gaps = 33/310 (10%) Query: 20 WHV-GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 W V G TS NP V +I+ G ++G G T G HAEVQAL +A + GATA VTLE Sbjct: 27 WEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGKTEGATAVVTLE 86 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KI 136 PC H GR+ PC Q +IE GI+ V+ DP+ G G Q L GI V ++ EG Sbjct: 87 PCRHTGRTGPCTQALIEAGIKDVLFLHSDPNPSAGG-GEQVLVDAGINVVQLPSPEGVPD 145 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L +L +R H+TLK A + D A S ITG ++++ VH R DAI++G Sbjct: 146 ALIPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHADREHRDAIIIG 205 Query: 197 IGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 GT L D+P LT R +G Q EH P R++ + + I A A Sbjct: 206 TGTALIDNPSLTARYPDGTQREHQPRRVV--------IGRRNIADAGDA----------- 246 Query: 255 VLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 N+N + + + + L L G +LVEGGA +A F N LVD + + Sbjct: 247 -------ASNLNRLGFEQYATIDEALAELYATGARDVLVEGGAGLASGFANQGLVDWLQV 299 Query: 314 YRSQIVIGEG 323 Y++ +++GEG Sbjct: 300 YQAPLLLGEG 309 >gi|134098691|ref|YP_001104352.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] gi|133911314|emb|CAM01427.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] Length = 345 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 148/307 (48%), Gaps = 33/307 (10%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C+++ + T G PHAEV AL EAGE ARG TA VTLEPCSH Sbjct: 26 GTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARGGTAVVTLEPCSH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139 GR+PPC ++ G+ RVV V DP + V+ G L G+ V + E L Sbjct: 86 TGRTPPCTDALLAAGVARVVHAVSDP-MPVAAGGADILRAAGVEVHSGLLAEEAESGPLR 144 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+L R H+T K A + D A S I+ ++ +VH LR + DA++ G GT Sbjct: 145 AWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELRRRMDAVVAGTGT 204 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 VLADDP+LT R GL EH P+R+++ + PV A Sbjct: 205 VLADDPQLTARTPEGGLHEHQPLRVVV--------------------------GNRPVPA 238 Query: 258 LA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 A + D +L L GRG +L+EGG +A +F + +D ++ Y + Sbjct: 239 GARVLDDTAETLLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAAGRIDRVLGYIA 298 Query: 317 QIVIGEG 323 ++G G Sbjct: 299 PALLGSG 305 >gi|291003622|ref|ZP_06561595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] Length = 348 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 107/307 (34%), Positives = 148/307 (48%), Gaps = 33/307 (10%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C+++ + T G PHAEV AL EAGE ARG TA VTLEPCSH Sbjct: 29 GTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARGGTAVVTLEPCSH 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESEGKIFLH 139 GR+PPC ++ G+ RVV V DP + V+ G L G+ V + E L Sbjct: 89 TGRTPPCTDALLAAGVARVVHAVSDP-MPVAAGGADILRAAGVEVHSGLLAEEAESGPLR 147 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+L R H+T K A + D A S I+ ++ +VH LR + DA++ G GT Sbjct: 148 AWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELRRRMDAVVAGTGT 207 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 VLADDP+LT R GL EH P+R+++ + PV A Sbjct: 208 VLADDPQLTARTPEGGLHEHQPLRVVV--------------------------GNRPVPA 241 Query: 258 LA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 A + D +L L GRG +L+EGG +A +F + +D ++ Y + Sbjct: 242 GARVLDDTAETLLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAAGRIDRVLGYIA 301 Query: 317 QIVIGEG 323 ++G G Sbjct: 302 PALLGSG 308 >gi|29349136|ref|NP_812639.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron VPI-5482] gi|29341044|gb|AAO78833.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron VPI-5482] Length = 339 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 167/323 (51%), Gaps = 20/323 (6%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83 + NP V +IV DG++IG G G HAEV A+ +++ +T YV+LEPCSHYG Sbjct: 16 APNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKSLLSRSTIYVSLEPCSHYG 75 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 ++PPCA IIE I R+V+ DP +V+GRG+Q L G V ++E E + + ++ Sbjct: 76 KTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGREVTVGVLEKECRYLIRRFI 135 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200 T R ITLK A S D+ I + P+ + ++ VH RA++DAI+VG T Sbjct: 136 TFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSMLVHKKRAETDAIMVGRRTA 195 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D+P LT R +P+RI+LD L ++ + P I+ T P Sbjct: 196 LLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGEV--PTIVFTAEKHP------ 245 Query: 261 RKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 KKN+ + L +++ +L + + SLLVEGG+ + SFI++ L D + + + Sbjct: 246 DKKNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSFIDAELWDEVYIEKCPC 305 Query: 319 VIGEGGIPSPLEEGY---LEKNF 338 + G + + + EK+F Sbjct: 306 KLNSGVKAPEISDNFSYSTEKHF 328 >gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 383 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 115/336 (34%), Positives = 175/336 (52%), Gaps = 17/336 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 FM A+ +R G TS P V ++V++ VIGRG T+ PHAE+ AL EA A Sbjct: 6 FMQKAIACARSIEGRTSPRPPVGAVLVRENQVIGRGATSPPYGPHAEIHALREAETTAAV 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA Y TLEPC +PPC II GI+RV++ DP+ +VSGRG+ L + GI ++ Sbjct: 66 GADLYTTLEPCCITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIEVIT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E + + T + R ++T K A++ D + + I+G ++ VH LR Sbjct: 126 TIAEPETAALIRPFATYITQGRPYVTAKWAMTLDGKLASHTGDASWISGSAARTWVHQLR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------MRIILDPHFKLSLDSKIIKTA 240 + DAI++G+GT ADDP LT RL Q P +RI++ +L+ ++ + Sbjct: 186 DRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQRPNHLRIVVSSRGELNAQLQLFQKQ 245 Query: 241 LLAP--VIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293 LAP +IV+E P R++ I +I DL L IL R + LL+E Sbjct: 246 -LAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQTGRVDLMAALHILGQREIMHLLLE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 GG+++ S +L+D + + + +IG G PSP+ Sbjct: 305 GGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPI 340 >gi|227499806|ref|ZP_03929901.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus tetradius ATCC 35098] gi|227218110|gb|EEI83378.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus tetradius ATCC 35098] Length = 357 Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 155/316 (49%), Gaps = 15/316 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M +R G TNP V ++ KDG VIGRG HAE+ + A G Sbjct: 6 LMRECFSLARKGRGKVLTNPMVGAIVYKDGEVIGRGYHKSFYDDHAEIDCFKNLKGSAEG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT V LEPCSH+G+ PPC +I I+RVV+ D + +V G+ L GI ++ Sbjct: 66 ATLIVNLEPCSHFGKHPPCVDEVIRRKIKRVVISNIDTNPKVD--GISKLKACGIEVISG 123 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E EGK + KR + LK A S D I S I+ S+ VH LR Sbjct: 124 VLEEEGKKLNEKFFFNMSHKRPLVALKYAQSLDGKIATGKFDSKWISNEKSREFVHQLRN 183 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAI+VG T+L D+P LT R++ + P+RII+ L+ D ++ K I Sbjct: 184 DYDAIIVGKNTLLTDNPRLTSRID--KGIDPVRIIVSDSLDLNPDLEVFKENSDGKTYIA 241 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + +D + K + +I C + DL+ LL L + + S+LVEGG+ + +SF+ Sbjct: 242 SSSDKDI------KLDSGLIRCKSKNGHIDLEDLLKKLYEKNIGSVLVEGGSVLNNSFLE 295 Query: 305 SRLVDSIILYRSQIVI 320 L+D I + + I++ Sbjct: 296 EDLIDKIYQFMAPIIV 311 >gi|333028400|ref|ZP_08456464.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071] gi|332748252|gb|EGJ78693.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071] Length = 372 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 120/346 (34%), Positives = 176/346 (50%), Gaps = 11/346 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 ++ + M A+ + +G T NP V C+++ G V GRG G PHAE+ AL Sbjct: 10 ATAAETAAMREAIALAARGLGRTRPNPVVGCVVLDASGEVAGRGWHQRAGGPHAEIHALR 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARG TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G G L Sbjct: 70 AAGERARGGTALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRA 128 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V+ ++E E A+LT R H+T K A S D A S IT ++ Sbjct: 129 AGVDVEHGLLEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIK 238 VH LRA DA+LVG GT DDP L R + G + P+R++LD + ++++ Sbjct: 189 ADVHRLRATCDAVLVGSGTARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLD 246 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 A AP ++ +D P A + DL LL L R V +L+EGGA + Sbjct: 247 DA--APTLVALADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGVLLEGGARL 304 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 A +F+ + D ++ Y + +++G G P+ L + + +R D Sbjct: 305 AGAFVAAGYTDRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLD 348 >gi|265765179|ref|ZP_06093454.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16] gi|263254563|gb|EEZ25997.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16] Length = 340 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 176/342 (51%), Gaps = 34/342 (9%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83 S NP V +IV +G +IG G G HAEV A+ + + + +T YV+LEPCSH+G Sbjct: 16 SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ ++E+E + + ++ Sbjct: 76 KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLETECRELIRKFI 135 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200 T R +I LK A S D I + P+ + ++ VH RA+SDAI+VG T Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D+P LT R H+P+RI++D + L S + +D+ V L F Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239 Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 K+N+ I + + L ++L+ L R + SL++EGG + SFI S + D +I Sbjct: 240 TEHPRAGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFIRSGIWDEVI 299 Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 + +S ++ G+ +P + EK+F R Y + Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|254495519|ref|ZP_05108443.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152] gi|85819875|gb|EAQ41032.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152] Length = 337 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 100/328 (30%), Positives = 176/328 (53%), Gaps = 16/328 (4%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATA 72 ++ ++ +G+T NPSV +IV +I G T+ G HAEV A+ +++ + AT Sbjct: 1 MQIAKNGIGVTRPNPSVGAVIVHQNKIIAEGFTSNYGGNHAEVNAIIAVKDKSLLKEATI 60 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMME 131 YVTLEPCSHYG++PPCA II+ +++VV+ D + V+G+G++ + + GI V ++E Sbjct: 61 YVTLEPCSHYGKTPPCADLIIKHKLKKVVIGTLDTNSLVAGKGVERIEKAGIDVKVGVLE 120 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQVHLLRA 188 + K + T Q +KR ++ LK A SQD I + I+ S+ VH LR+ Sbjct: 121 EKCKKHHKRFFTSQNKKRPYVILKWATSQDGFIAPLKKEVQKPIWISNQYSQQLVHKLRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + AILVG T +AD+P+L R ++P+R++LD ++ + I ++ I + Sbjct: 181 KEHAILVGTNTAIADNPKLNVR--SWSGNNPIRVVLDKSLRIENNLNIYDNSV--KTIFI 236 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 TE + + + NI D + +++L +L + S+++EGG +FI+ Sbjct: 237 TEKE---VHNCGDESNIIFEKIDFKQKIAEQVLAVLQKHNIQSVIIEGGTQTLQTFIDEN 293 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYL 334 L D ++ + + + GI +P+ G + Sbjct: 294 LWDEAFVFTGDVCLND-GIKAPVFGGQI 320 >gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL2A] gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL2A] Length = 364 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 18/357 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M +++ + G TS NP V +++ +G ++G G + G PHAE++AL +AG++A Sbjct: 14 WMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHAEIEALAQAGKKAL 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 T VTLEPC H G +PPC + II G+++VVV + DPD RVSG G+ L G+ +++ Sbjct: 74 DGTIVVTLEPCCHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIE 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ E + + R R LK A+S D IG+ S IT +++ VH +R Sbjct: 134 GVLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARHSVHRIR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ DA++VG GTV AD+P LT R + P+R++ L +K+ T + +I Sbjct: 194 SKCDAVIVGGGTVRADNPLLTSREK--LDFEPLRVVFSKTLNLPQSAKLWDTKIARTIIA 251 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 D + + + + +LL+ L +G +L E G +A S I + Sbjct: 252 YGPEGDESF-FSDLPNGPEKLRLNSNNPSELLSSLAKKGCNKILWECGPQLATSAIEANC 310 Query: 308 VDSIILYRSQIVIGEGGIPSPLEE-GY--------LEKNFMCVRRDYFGSDVCLEYI 355 V ++++ + ++G SPL G+ L+ +F+ D G D+C I Sbjct: 311 VQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFL----DRKGEDICWRLI 363 >gi|31335381|emb|CAD89884.1| riboflavin biosynthesis protein ribD [Bacillus cereus] Length = 209 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 85/206 (41%), Positives = 121/206 (58%), Gaps = 1/206 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQXYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI V Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 127 DRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + L+ Y ++ KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL 211 R DAILVG+ TV+AD+P LT R+ Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRI 208 >gi|253564134|ref|ZP_04841591.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5] gi|251947910|gb|EES88192.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5] gi|301161570|emb|CBW21110.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis 638R] Length = 340 Score = 155 bits (393), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 175/342 (51%), Gaps = 34/342 (9%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYG 83 S NP V +IV +G +IG G G HAEV A+ + + + +T YV+LEPCSH+G Sbjct: 16 SPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLKHSTIYVSLEPCSHHG 75 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ ++E E + + ++ Sbjct: 76 KTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIVGVLEPECRELIRKFI 135 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHLLRAQSDAILVGIGTV 200 T R +I LK A S D I + P+ + ++ VH RA+SDAI+VG T Sbjct: 136 TFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHKKRAESDAIMVGTRTA 195 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D+P LT R H+P+RI++D + L S + +D+ V L F Sbjct: 196 LLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--------------SDNSVSTLVF 239 Query: 261 R------KKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 K+N+ I + + L ++L+ L R + SL+VEGG + SFI S + D +I Sbjct: 240 TEHPRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMVEGGRILLESFIRSGIWDEVI 299 Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 + +S ++ G+ +P + EK+F R Y + Sbjct: 300 IEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|260578782|ref|ZP_05846689.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC 43734] gi|258603080|gb|EEW16350.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC 43734] Length = 354 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 117/351 (33%), Positives = 168/351 (47%), Gaps = 50/351 (14%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 L S NP V +I G V+GRG T G HAEV AL++AGE+ARG A VTLEPC+H Sbjct: 19 LASPNPPVGAVIEDSSGQVVGRGFTQAPGGAHAEVVALQQAGEQARGGRAIVTLEPCNHT 78 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV------------DRMM 130 GR+ PCA+ +I GIRRV D + G G L G+ V + + Sbjct: 79 GRTGPCAEALIRAGIRRVDFLFADLNPAAEG-GAATLRAAGVEVHGPYLPLPTAGDEAKL 137 Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + K++ + +L +R H+ LK+A + D + S ITG ++ VH R + Sbjct: 138 PAWSKMYSVEPWLISMARQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVAVHEDRTR 197 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 DAILVG GT+ AD+P LT R Q E P+R+I+ Sbjct: 198 RDAILVGTGTIAADNPRLTARDAEGQPFAEELQPLRVIMG-------------------- 237 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D PV A F + ++ RD+ ++L L R V +LLVEGGA +A +F+ + Sbjct: 238 ----TSDIPVDAAVFAAPG-HALHLPTRDVNEVLAELWKRDVRTLLVEGGAQIAAAFMEA 292 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR------DYFGSDV 350 +VD + Y + V+G G E L + +RR FG+D+ Sbjct: 293 DVVDEVQFYAAPAVLGAGVASLSDSENILGQTIGDIRRFIPRELQVFGNDL 343 >gi|319900207|ref|YP_004159935.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides helcogenes P 36-108] gi|319415238|gb|ADV42349.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 107/323 (33%), Positives = 168/323 (52%), Gaps = 19/323 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 ++M ++ ++ + T+ NP V +IV DG +IG G + G HAEV A+ + + Sbjct: 4 KYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVHCGEAHAEVNAIRSVKDPSL 63 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--I 124 + AT YV+LEPCSHYG++PPCA IIE I R+++ DP +V+GRG+Q L G + Sbjct: 64 LQRATIYVSLEPCSHYGKTPPCADLIIEKQIPRIIIGCMDPFSKVAGRGIQKLKDAGREV 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 IV ++E E K + ++T +R +ITLK A S D I P+ + + Sbjct: 124 IVG-VLEEECKSLIRRFVTFHTLRRPYITLKWAESADGYIDSYRTNGNPVVLSSPFTSML 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R + AI+VG T D+P L R H P+RI+LD L D + L Sbjct: 183 VHKQRTEHSAIMVGTHTAKLDNPRLNVR--HWYGHPPVRIVLDKDRALPTDLHLFDGDTL 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ TE +L N+ + + + L +++ L RG+ SLLVEGG+ + Sbjct: 241 T--LVFTETPHDLLP------NVEYLPINYQQDILPQIMEELYTRGLQSLLVEGGSILLQ 292 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 SFI++ + D I + + I++ G Sbjct: 293 SFIDTGIWDEIFVEEAPILLHSG 315 >gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1] gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1] Length = 367 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 107/325 (32%), Positives = 162/325 (49%), Gaps = 12/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G Sbjct: 5 YMNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKGN 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+ Sbjct: 65 DVRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGVD 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ +E + + +R + + +K A S D + + S IT ++ H Sbjct: 125 VEIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGH 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ IL GIGTVL D+P L R + P ++D + D+ ++K Sbjct: 185 AWRARACTILTGIGTVLEDNPRLNVR-DQPTPRQPRIAVVDSKLDIPPDAHVLKAPSGCF 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + + N + L R +I DL LL L RG L VE G + Sbjct: 244 IYTCSINQSKIEKL--RALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGI 325 S I LVD ++ Y++ ++G G + Sbjct: 302 SLIREGLVDELLFYQAPKLLGTGAM 326 >gi|212696303|ref|ZP_03304431.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM 7454] gi|212676932|gb|EEB36539.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM 7454] Length = 359 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 109/333 (32%), Positives = 159/333 (47%), Gaps = 23/333 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T NP V ++VKDG +I G G HAEV E Sbjct: 3 DKYYMKKCFDLAKKARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI V Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLREKGIEV 120 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242 LR DAI+VG T++ D+P L R+ + P+R+I+D + ++ D KI Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--EGVDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238 Query: 243 APVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 I T + D+P ++N+I C + DL+ L+ L + S+LVEGG+ Sbjct: 239 KKTYIATCKDTDNP---------DLNLIKCKMKNNHVDLEDLVNKLYEMNIGSILVEGGS 289 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + + F+ LVD I + S +IG SP Sbjct: 290 ILNYDFLEEGLVDKIYEFISPKIIGGFNSKSPF 322 >gi|150019955|ref|YP_001305309.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis BI429] gi|149792476|gb|ABR29924.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis BI429] Length = 337 Score = 155 bits (392), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 108/337 (32%), Positives = 162/337 (48%), Gaps = 47/337 (13%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A+ S+ +G S NP V +IVK+G +IG G G HAE A+ A E+ + Sbjct: 3 KYMKLAIELSKKGIGKVSPNPLVGAVIVKNGKIIGMGYHERYGGFHAERNAILNAKEDVK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 G++ +V LEPCSH+G++ PC II GI +V + DP+ V+G+G++ L + GI VD Sbjct: 63 GSSLFVNLEPCSHHGKNLPCVDLIISSGISKVYIASVDPNPLVNGKGIEKLKKNGIEVDV 122 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ E K + +K ++ LK+A++ D I + S IT + N H LR Sbjct: 123 GLLSDEAKYLNRVFFKYITKKLPYVALKVALTLDGFIADSNGNSKWITK-QNFNVSHSLR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +ILVG TVL D+P LTCR G +P+RI+LD Sbjct: 182 NFFSSILVGANTVLKDNPRLTCRNGG---RNPVRIVLD---------------------- 216 Query: 248 VTENDDPVLALAFRKKN---INIIYCDC----------RDLKKLLTILVGRGVTSLLVEG 294 D L F N I++ C + +L+ L G+ S+L+EG Sbjct: 217 ---RDGITLGRGFNVYNEEARTIVFSKCCQGTLECYPETEPFDILSRLYNLGIDSVLIEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 GA+V F+N D + L+ S + G G SP E Sbjct: 274 GASVLSQFLN--FADELHLFYSTKIFGRG--LSPFEN 306 >gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium HTCC5015] gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium HTCC5015] Length = 363 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 174/356 (48%), Gaps = 19/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV---QALEEAGEEA 67 M+ AL+ + + T +NP V C+I + V+ G G HAEV QAL E+ + Sbjct: 1 MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 ATAYVTLEPCSHYG++ PC++ +I+ GI RVV + DP+ V+G GL L Q G+ V Sbjct: 61 STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ESE + ++ R + LK+A S D +A S IT ++ H Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-----EHSPMRIILDPHFKLSLDSKIIKTAL 241 RA++DAI+ G+ TVLAD+ LT R + Q P+R++LD + D+ ++ A Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240 Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298 ++ D P L AL I + DL +L L GV E GA + Sbjct: 241 RVLILHRDGADSPRLRALLDAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGARL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSD 349 A S + LVD ++ Y + ++IG P+ E L+ K F V G D Sbjct: 301 AGSLLEEGLVDELLYYLAPVLIGSEA--KPIAEFSLQALSEKKAFKVVEERRMGRD 354 >gi|149921258|ref|ZP_01909714.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Plesiocystis pacifica SIR-1] gi|149817918|gb|EDM77380.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Plesiocystis pacifica SIR-1] Length = 366 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 116/324 (35%), Positives = 177/324 (54%), Gaps = 11/324 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M ALR ++ G T NP V ++VK G+V+GRG + G PHAEV+AL +AG A Sbjct: 9 AHWMGHALRLAKSGTGATYPNPCVGAVLVKKGVVVGRGRSDVTGGPHAEVRALRQAGAAA 68 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPCSH GR+PPC IIE G+RRV + V+DP V G+G++ L + G+ V+ Sbjct: 69 RGAAMYVTLEPCSHRGRTPPCVDAIIEAGVRRVCIGVEDPAPHVGGKGIRKLRRAGLEVE 128 Query: 128 RMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + +HA YL R +TLK+A S D + A S ITG ++ H L Sbjct: 129 VGVCGDQARSIHAHYLHHVATGRPFVTLKVASSIDGRLATASGDSKWITGAAARKSAHRL 188 Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA I VG TVL D+P L R ++G+ P+ +I D +++ + + A V Sbjct: 189 RALHHGIAVGSETVLRDNPGLDVRHVDGVD---PIPVIFDSRLRVTAAKRAELKLMRAGV 245 Query: 246 IIV-TENDDPVLALAFRKKNINIIY----CDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 +++ T + + + + R D++ L +L R + SL+VEGG + Sbjct: 246 LVLYTARASKTAQARLARTPVEGVEVPGDAEGRVDIEAALELLGARELRSLMVEGGGKLL 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 SF+ + + + +YR+ +++GEG Sbjct: 306 GSFVAADAFEELWVYRAPVILGEG 329 >gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharophagus degradans 2-40] gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharophagus degradans 2-40] Length = 365 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 112/333 (33%), Positives = 178/333 (53%), Gaps = 19/333 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEE 62 S D RFM+ A++ +R T+ NP V C++V ++G G G HAEV A+ + Sbjct: 5 SVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAIAD 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPCSH G++ PC + ++ G+ RVV ++DP+ +V+GRGL L Sbjct: 65 AGAAARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLEAA 124 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD ++E + ++ R + I +K+A+S D MA S IT +++ Sbjct: 125 GIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSPRARD 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--- 238 V LRA+S A++ G+ +VL DDP LT RL+ P+R+I+D +L D+ I+ Sbjct: 185 DVQRLRARSCALITGVDSVLLDDPSLTVRLSD-DARQPLRVIVDSKLRLPKDAAILSQPG 243 Query: 239 TALLAPVIIVTENDDP-----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++A V + P + L + ++ L+ L L + +LVE Sbjct: 244 KTVIATCANVNQAQSPYGDTEIWTLPEKDGRVS--------LQALARKLAQQECNEVLVE 295 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 GA +A +F++S LVD +++Y + ++G P Sbjct: 296 TGATLAGAFVSSGLVDELVIYMAGKLLGSTARP 328 >gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855] gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855] Length = 373 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 160/335 (47%), Gaps = 24/335 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +M L +R G S NP V A L+ DG V+G G G PHAE +AL+ A ++ Sbjct: 3 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62 Query: 68 ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G Sbjct: 63 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ + E + A+ R +TLK A + D I S ITG ++ Sbjct: 123 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ D ILVG GT DDP LT R ++G Q P+R++LD LS D + A Sbjct: 183 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQ---PLRLVLDRKGTLSPDRTLFTDAH 239 Query: 242 LAPVIIVTENDDPVLALA----------FRKKNINIIYCDCRDLKKLLTILVGRG---VT 288 + V +D P A R + + D L + L GR + Sbjct: 240 ADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQ 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 SLLVE G +A + LVD + + V+G+G Sbjct: 300 SLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDG 334 >gi|227877508|ref|ZP_03995573.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus crispatus JV-V01] gi|227862901|gb|EEJ70355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus crispatus JV-V01] Length = 356 Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 164/322 (50%), Gaps = 9/322 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M A++ ++ + T NP V +IVKDG ++ G G HAE A+ + E Sbjct: 8 DEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISKLTPE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+ L Q I Sbjct: 68 QLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQHNIQ 127 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++E + K Y ITLK AVS D I A IT +VH Sbjct: 128 VTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVYQRVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 RA AI++G T + D+P L + + P+RII+D +L L+ K++ T L Sbjct: 188 RERANYQAIMIGSNTAIIDNPSLLTTVTT--DFPPIRIIVDRRGRLLNHLNIKLL-TDKL 244 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +P I T+N LA +NI+I + +++ L + S+ VEGG +A++ Sbjct: 245 SPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANAL 302 Query: 303 INSRLVDSIILYRSQIVIGEGG 324 + V+++I Y S I++G+ G Sbjct: 303 LAEGQVNNLITYISPILLGQKG 324 >gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8] gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8] Length = 397 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 160/335 (47%), Gaps = 24/335 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +M L +R G S NP V A L+ DG V+G G G PHAE +AL+ A ++ Sbjct: 27 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86 Query: 68 ----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G Sbjct: 87 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V+ + E + A+ R +TLK A + D I S ITG ++ Sbjct: 147 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 206 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ D ILVG GT DDP LT R ++G Q P+R++LD LS D + A Sbjct: 207 VHQWRAELDGILVGRGTAAHDDPRLTVRHVDGPQ---PLRLVLDRKGTLSPDRTLFTDAH 263 Query: 242 LAPVIIVTENDDPVLALA----------FRKKNINIIYCDCRDLKKLLTILVGRG---VT 288 + V +D P A R + + D L + L GR + Sbjct: 264 ADDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQ 323 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 SLLVE G +A + LVD + + V+G+G Sbjct: 324 SLLVEAGPGLATALFRQDLVDRFFCFVAPKVLGDG 358 >gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans A8] gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans A8] Length = 383 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 163/320 (50%), Gaps = 15/320 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P + D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV AL Sbjct: 3 IPSDNDDIFWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCAL 62 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 63 RDVQARGESVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLA 122 Query: 118 WLSQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI V + + ++A +++R + LK+A S D + S ITG Sbjct: 123 RLRLAGIEVTTGVCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWITG 182 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSK 235 ++ H RA++ +L G+GTVL DDP+L R G+ P + ++D F++ D++ Sbjct: 183 PEARADGHRWRARACVVLTGMGTVLKDDPQLNVR--GVDTPRQPRKAVVDGRFEIPEDAR 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSL 290 + A VII T +D + KN ++ DL ++ L + Sbjct: 241 LFDG---AEVIIFTAREDAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEV 297 Query: 291 LVEGGAAVAHSFINSRLVDS 310 VE GA ++ + + + VD Sbjct: 298 HVEAGAGLSGALVAAGCVDE 317 >gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str. MIT 9202] gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str. MIT 9202] Length = 364 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 8/357 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 ++M A+ + TS NP V +I+ K+G ++ G G PHAE A ++ Sbjct: 9 TKWMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQD 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++ L + G+ V Sbjct: 69 VKGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQV 128 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E A++ R K++ LK A+S D I + S IT S++ VH Sbjct: 129 HLGLCKKESLELNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNKESRSLVHS 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR++ DAI++G T+ D+P LT R G + P+R++ L S + + Sbjct: 189 LRSEFDAIIIGGNTLRRDNPLLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCGEAKTL 246 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + L+ K + + + + + IL RG +L E G+ +A + I S Sbjct: 247 VIYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRGCNKVLWECGSRLATAAIKS 306 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 + II + + ++G +P + E+ ++ SD + IG ++C++ Sbjct: 307 NCIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKL----SDSKISLIGNDICVK 359 >gi|256842978|ref|ZP_05548466.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 125-2-CHN] gi|256848647|ref|ZP_05554081.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US] gi|262045946|ref|ZP_06018910.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus MV-3A-US] gi|293381447|ref|ZP_06627444.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 214-1] gi|256614398|gb|EEU19599.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 125-2-CHN] gi|256714186|gb|EEU29173.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US] gi|260573905|gb|EEX30461.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus MV-3A-US] gi|290921994|gb|EFD98999.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 214-1] Length = 353 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 164/322 (50%), Gaps = 9/322 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M A++ ++ + T NP V +IVKDG ++ G G HAE A+ + E Sbjct: 5 DEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISKLTPE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+ L Q I Sbjct: 65 QLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQHNIQ 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++E + K Y ITLK AVS D I A IT +VH Sbjct: 125 VTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVYQRVH 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 RA AI++G T + D+P L + + P+RII+D +L L+ K++ T L Sbjct: 185 RERANYQAIMIGSNTAIIDNPSLLTTVTT--DFPPIRIIVDRRGRLLNHLNIKLL-TDKL 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +P I T+N LA +NI+I + +++ L + S+ VEGG +A++ Sbjct: 242 SPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLANAL 299 Query: 303 INSRLVDSIILYRSQIVIGEGG 324 + V+++I Y S I++G+ G Sbjct: 300 LAEGQVNNLITYISPILLGQKG 321 >gi|84496639|ref|ZP_00995493.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649] gi|84383407|gb|EAP99288.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649] Length = 341 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 157/303 (51%), Gaps = 30/303 (9%) Query: 25 TSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83 + NP V C++V DG ++ G G PHAE AL AGE A+G TAYVTLEPC+H G Sbjct: 25 SDANPRVGCVLVDPDGALVAEGWHQGAGTPHAEAAALAAAGERAKGCTAYVTLEPCNHTG 84 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 R+ PC+ + G+ RVV V DP+ +G G WL+++G+ + ++E+E ++L Sbjct: 85 RTEPCSHALAAAGVSRVVYAVSDPNASAAG-GAAWLAERGVATEGGLLEAEATALNRSWL 143 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R R +T K+A + D A S ITG S+ VH RA+ AI+VG GT L Sbjct: 144 HRIRTGRPWVTWKLAATLDGRSAAADGTSQWITGPESRQDVHEQRARCGAIIVGTGTALT 203 Query: 203 DDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DDP LT R L +H P+R+I+ L+ D+++ DD Sbjct: 204 DDPRLTARRADGTLHDHQPLRVIMGLR-DLAPDARVF--------------DD------- 241 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + ++ R ++++ L R + + +EGG VA +F+ LVD I+ Y + +++ Sbjct: 242 ---SAQTVHLRTRQPREVVAYLAEREIHHVWLEGGPTVAAAFMADGLVDEIVAYIAPVLL 298 Query: 321 GEG 323 G G Sbjct: 299 GRG 301 >gi|124026389|ref|YP_001015504.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL1A] gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL1A] Length = 350 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 177/345 (51%), Gaps = 20/345 (5%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ +G ++G G G PHAE++AL +AG+++ T VTLEPC H Sbjct: 13 GRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLDGTIVVTLEPCCH 72 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 G +PPC + II+ G+++VVV + DPD RVSG G+ L G+ +++ ++ E + Sbjct: 73 QGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIEGVLSQECESINRE 132 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + R R LK A+S D IG+ S IT +++ VH +R++ DA++VG GTV Sbjct: 133 FSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARDSVHRIRSKCDAVIVGGGTV 192 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALA 259 AD+P LT R G + P+R++ L +K+ T + ++ E D+ + Sbjct: 193 RADNPLLTSR--GKSDFEPLRVVFSRTLNLPQSAKLWDTKIARTLVAYGPEGDESFFSDL 250 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + D + +LL+ L +G +L E G +A S I + V ++++ + + Sbjct: 251 LDGPEKLRLNSD--NPSELLSSLAKKGCNKILWECGPQLATSAIEANCVQELVVFVAPKL 308 Query: 320 IGEGGIPSPLEE-GY--------LEKNFMCVRRDYFGSDVCLEYI 355 +G SPL G+ L+ +F+ D G D+C I Sbjct: 309 LGGMSSMSPLNNFGFESISSSYKLQHSFL----DRKGEDICWRLI 349 >gi|167762046|ref|ZP_02434173.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC 43183] gi|167700138|gb|EDS16717.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC 43183] Length = 347 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 114/360 (31%), Positives = 177/360 (49%), Gaps = 42/360 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ + Sbjct: 3 EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDP 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG++ L G Sbjct: 63 SLLKRSTIYVSLEPCAHYGKTPPCADLIIEKEIPRIVIGCQDPFAKVAGRGIRKLKDAGR 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI------GMAGCGSVPITGF 177 ++ ++E E + + ++T R +ITLK A S D I G S P+T Sbjct: 123 EVITGVLEDECRSLIRRFITFHTLHRPYITLKWAESADKYIDKNREDGQPVILSTPLTSM 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + VH RA+ +AI+VG T D+P LT R Q SP+RI+ D +LS ++ Sbjct: 183 L----VHKKRAEHNAIMVGTRTAELDNPSLTVR--NWQGRSPVRIVTDRQLRLSPKLRVF 236 Query: 238 KTALLAPVIIVTENDDPVLALAFRKK------NINIIYCDCRD--LKKLLTILVGRGVTS 289 D V L F +K N+ I D + L +++ L +G+ S Sbjct: 237 --------------DGNVRTLVFTEKPCQPQPNVEYIPIDFQRNILPQIMEHLYMQGLQS 282 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 LLVEGG + SFI++ L D + S + + GI +P + C YFG + Sbjct: 283 LLVEGGNILLQSFIDAELWDEAFVEESPLTL-LSGIKAP----EIGNKAPCTNEVYFGRN 337 >gi|254468535|ref|ZP_05081941.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13] gi|207087345|gb|EDZ64628.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13] Length = 363 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/328 (30%), Positives = 162/328 (49%), Gaps = 15/328 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D FM+ A++ ++ +G + NP V +IV D +I G G PHAEV A+ Sbjct: 1 MTFNKLDFFFMAQAIKLAKKGLGQCNPNPIVGAVIVVDDKIIATGYHQEFGGPHAEVVAI 60 Query: 61 EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++A + +T +VTLEPC+H G++PPC I++ I+RVV+ DP+ +V+G ++ Sbjct: 61 HNCKDKALLKKSTLFVTLEPCAHEGKTPPCLDLILKHDIKRVVIASQDPNPKVNGISIKS 120 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L +KG+ VD +ME + + R + + KIAVS D + S I+ Sbjct: 121 LIEKGVEVDVGLMEDQAFNLNKGFFKRILNNIPRVVSKIAVSSDGKTALNNFQSKWISNE 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S++ V LR SD IL T+ +D+P T R + P R I+D F+ +LD+ I Sbjct: 181 FSRSDVQKLRRLSDGILTSYKTINSDNPRFTVR-DVDSSKQPYRFIIDASFQSNLDAHIF 239 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 K + + P L I C D +++ + V +LLVE Sbjct: 240 KQEKVVIFYSKEITNKPNLKAI-------CIPVSCVDGVLNFTEIMKHIASMEVNNLLVE 292 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 G + + R++D +I+Y+SQ ++G Sbjct: 293 AGPGLNGLLLQHRMIDELIIYQSQSLLG 320 >gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herminiimonas arsenicoxydans] gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Herminiimonas arsenicoxydans] Length = 363 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 114/324 (35%), Positives = 168/324 (51%), Gaps = 12/324 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL +A Sbjct: 6 DVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANK 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + G+T YVTLEPCSH+GR+PPCA +I + RVV + DP+ V+G+GL L G Sbjct: 66 GYDVAGSTVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V ++E+E + +L+R + + +K A S D M + S ITG ++ Sbjct: 126 IEVACGVLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H+ RA++ AIL GIGTV DDP+LT R + P RI++D ++S ++++ Sbjct: 186 GHVWRARACAILTGIGTVREDDPQLTVRAIDIPRQ-PQRIVIDSQLQISPHARVLSG--- 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIY---CDCR-DLKKLLTILVGRGVTSLLVEGGAAV 298 IV P R II D + DL L+ L R + L VE G + Sbjct: 242 GGTWIVAAQAHPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGE 322 S I VD +++Y + ++G+ Sbjct: 302 NGSLIREDCVDELLVYLAPTLLGD 325 >gi|116334232|ref|YP_795759.1| pyrimidine reductase, riboflavin biosynthesis [Lactobacillus brevis ATCC 367] gi|116099579|gb|ABJ64728.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus brevis ATCC 367] Length = 356 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 109/362 (30%), Positives = 175/362 (48%), Gaps = 11/362 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--A 63 + FM A+ +R G T TNP V + VK G ++ G G HAE+ AL + Sbjct: 2 LEQSFMQQAVIAARRGSGHTWTNPLVGAVFVKHGKILSVGYHHRYGQRHAEIDALAQLQR 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A+GAT YVTLEPCSH+G++PPCA +IE G+ RVV+ DP+ V+GRG+ L G Sbjct: 62 PQQAQGATLYVTLEPCSHFGKTPPCADRLIEVGVGRVVIGQRDPNPLVAGRGISKLRAAG 121 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I V + + AY R +T+K A+S D + A +TG + Sbjct: 122 IPVSVLDSTTA--LNPAYNFYYQHHRPQVTVKYAMSLDGKVNQAEAQRTYLTGAAAMADS 179 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR Q AIL+G T+ D P LT R E P+R+++ H +D+ Sbjct: 180 QQLRRQQQAILIGERTLTIDHPRLTIRDAITDEPVPIRMVVL-HDIEHIDTSQPLFKAPG 238 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P+ ++T + A + + + + + +G+ +LLVEGG+ + +F+ Sbjct: 239 PIWLLTTHP----ATCQLPEQVRVFTRTTWSPAAITALCYQQGIQALLVEGGSHLQAAFV 294 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY--LEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 L D +++Y S ++IG G+P+ + ++ ++ G+DV L + C Sbjct: 295 RDDLADQLVIYLSPLLIGGAGLPAVYAPDWPSPKRAYIPPVTTLLGNDVKLTTRRQRKCS 354 Query: 362 QE 363 QE Sbjct: 355 QE 356 >gi|296140262|ref|YP_003647505.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola DSM 20162] gi|296028396|gb|ADG79166.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola DSM 20162] Length = 332 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/304 (36%), Positives = 149/304 (49%), Gaps = 33/304 (10%) Query: 23 GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G+++ NP V A ++ DG V GRG TA G PHAEV AL EAG+ ARG TA VTLEPC H Sbjct: 23 GVSTPNPPVGAVILAADGTVAGRGRTAPAGGPHAEVVALAEAGDAARGGTAVVTLEPCDH 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 GR+ PC Q +I GI RV DP+ +G G L G+ V + L + Sbjct: 83 TGRTGPCTQALIAAGIARVAYAAADPNPVAAG-GAATLRSAGLDVTHLGVEPWP--LTEW 139 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L RQ R +T+K+A + D I S ITG ++ +VH RAQ DAI+VG GTV Sbjct: 140 LFRQRHGRPMVTVKLAATVDGRIAAPDGTSQWITGPAARARVHAERAQLDAIIVGTGTVA 199 Query: 202 ADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 DDP LT R L H P RI++ ++S +KI A Sbjct: 200 VDDPALTARRPDGSLYRHQPNRIVIG-DREVSSGAKI---------------------FA 237 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K + + D R V + VEGG+ V +F+ + LVD + Y + ++ Sbjct: 238 APGKVVRVHGHDPRAALAAAADAV-----HVQVEGGSTVIGAFLAAGLVDRVQAYIAPVL 292 Query: 320 IGEG 323 +G G Sbjct: 293 LGAG 296 >gi|326382172|ref|ZP_08203864.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL B-59395] gi|326198902|gb|EGD56084.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL B-59395] Length = 339 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 113/318 (35%), Positives = 153/318 (48%), Gaps = 33/318 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ S G T+ NP V +++ DG + G G T G PHAEV AL AGE ARG Sbjct: 10 MRRAIAESEAAQGFTTPNPPVGAVVLDADGEIAGVGRTQPPGGPHAEVMALRAAGERARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA VTLEPC H GR+ PC Q ++ GI V V DP+ +G G Q L G+ V Sbjct: 70 GTAVVTLEPCDHTGRTGPCTQALLSAGIADVHFAVADPNPDAAG-GAQTLRAAGVDVHPG 128 Query: 129 MMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ESE + L +L RQ R +T KIA + D I S ITG ++ H +R Sbjct: 129 VLESEARSGPLKYWLFRQKTGRPFVTAKIAATADGRIAAPDGSSQWITGPQAREHAHEVR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DAI+VG GTVL DDP LT R L +H P R++L Sbjct: 189 GRLDAIVVGTGTVLVDDPSLTARRPDGRLLDHQPTRVVLG-------------------- 228 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + P A R + ++ RD + ++ L +LVEGG V +F+ + Sbjct: 229 ----LREVPAAAR-VRDGSAPFVHVASRDPRAVVDALP--DALHVLVEGGPEVIGAFLAA 281 Query: 306 RLVDSIILYRSQIVIGEG 323 LVD I Y + ++G G Sbjct: 282 GLVDEIHAYLAPTILGAG 299 >gi|257868250|ref|ZP_05647903.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30] gi|257874477|ref|ZP_05654130.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC10] gi|257802364|gb|EEV31236.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30] gi|257808641|gb|EEV37463.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC10] Length = 358 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/353 (33%), Positives = 169/353 (47%), Gaps = 28/353 (7%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82 T TNP V +IVK+ VI +G G PHAE A+E+ + E+ +T YVTLEPC+H Sbjct: 20 TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSEDLINSTLYVTLEPCNHQ 79 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHA 140 G+ PPC Q II+ GI++VVV DP+ V+G+G ++L ++GI V +E ++ H Sbjct: 80 GKQPPCTQLIIDSGIKKVVVGQLDPNPIVAGQGKRFLEEQGIDVLVGIEETAVRRLNPHY 139 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Q +R ++ LK A++ D I ITG VH R ILVG TV Sbjct: 140 NFYHQ-HQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQERGDYQGILVGSQTV 198 Query: 201 LADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTEND 252 L DDP L + P+RI+LD PH L +D APV I T+ Sbjct: 199 LTDDPTLLTTVET--SFPPIRIVLDRRGRTLSQPHLALFVDDS-------APVWIFTQQ- 248 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 ++ ++++I + + LL L R V SL VEGGAA+ +F+ S L I Sbjct: 249 ---TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLASGLWQESI 305 Query: 313 LYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 Y + +G + S E + + V G DVC+ C Q+ Sbjct: 306 TYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358 >gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella avium 197N] gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella avium 197N] Length = 371 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/321 (32%), Positives = 163/321 (50%), Gaps = 13/321 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL +R + T+ NP V C+IV+DG ++G G T G HAEV AL A G + Sbjct: 1 MQRALGLAREVLYTTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RVSG+G L G+ V Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVS 120 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E ++ R + LK+A S D + S ITG ++ H Sbjct: 121 SGVCEEEALALNPGFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++D +L G+GT++ DDP+L R P R ++D F++ D+++ PV Sbjct: 181 RARADLVLTGLGTIVHDDPQLNVRAVSTPRQ-PRRGVVDGQFRVPEDARLFDG---EPVW 236 Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T D A +N+ ++ + DL ++ L + VE GA ++ + Sbjct: 237 VFTARQDHAKAERLASRNVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGA 296 Query: 302 FINSRLVDSIILYRSQIVIGE 322 + + VD +++Y + +++G+ Sbjct: 297 LLAADCVDELLVYLAPVLLGD 317 >gi|241888469|ref|ZP_04775779.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC 10379] gi|241864861|gb|EER69233.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC 10379] Length = 356 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 112/322 (34%), Positives = 161/322 (50%), Gaps = 12/322 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 FM AL ++ T TNP V +IVKD +I RG GC HAE A+ E E+ Sbjct: 5 FMKLALLEAKRGTKYTHTNPIVGAIIVKDDEIIARGSHLRYGCEHAEKNAISTCETPEKL 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC+H G+ PPC I+E GI +VVV DP+ VSG+G+++L GI ++ Sbjct: 65 FNSTLYVTLEPCNHKGKQPPCTDTIVEMGISKVVVAQLDPNPLVSGKGIKYLQDNGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E +AY EKR ++ LK A S D + ITG + V Sbjct: 125 TGVLEKEAYNLNYAYNLFHSEKRPYVVLKQATSLDGKLAFTN-KRTQITGKDVYDFVRNE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPV 245 R AILVG TVL D+P+LT L P RI+LD + ++ + L+ V Sbjct: 184 RDNYQAILVGARTVLTDNPKLTGANTSL--FPPKRIVLDADGDIFEHNNLNLFNNSLSEV 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I+ T+ L ++ II +K++L+ + G+ S+ VEGG + F+ S Sbjct: 242 IVFTKQKCKNLP-----SHVTIITPKEFSIKEILSEVAKLGIQSVYVEGGPNIHDQFLAS 296 Query: 306 RLVDSIILYRSQIVIGEGGIPS 327 D +I Y S I++G S Sbjct: 297 GYWDEVITYISPILLGGNNTSS 318 >gi|257877850|ref|ZP_05657503.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC20] gi|257812016|gb|EEV40836.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC20] Length = 358 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/353 (33%), Positives = 167/353 (47%), Gaps = 28/353 (7%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GEEARGATAYVTLEPCSHY 82 T TNP V +IVK+ VI +G G PHAE A+E+ E+ +T YVTLEPC+H Sbjct: 20 TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHFSEDLINSTLYVTLEPCNHQ 79 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHA 140 G+ PPC Q II+ GI++VV+ DP+ V+G+G Q+L ++GI V +E ++ H Sbjct: 80 GKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKQFLEEQGIDVLVGIEETAVRRLNPHY 139 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Q +R ++ LK A++ D I ITG VH R ILVG TV Sbjct: 140 NFYHQ-HQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQERGDYQGILVGSQTV 198 Query: 201 LADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTEND 252 L DDP L + P+RI+LD PH L D APV I T+ Sbjct: 199 LTDDPTLLTTVET--SFPPIRIVLDRRGRTLSQPHLALFADDS-------APVWIFTQQ- 248 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 ++ ++++I + + LL L R V SL VEGGAA+ +F+ S L I Sbjct: 249 ---TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLASGLWQESI 305 Query: 313 LYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 Y + +G + S E + + V G DVC+ C Q+ Sbjct: 306 TYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358 >gi|217076388|ref|YP_002334104.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B] gi|217036241|gb|ACJ74763.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B] Length = 343 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/336 (31%), Positives = 169/336 (50%), Gaps = 27/336 (8%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM AL+ ++ G S NP V +IVKDG +I G G HAE A+ A Sbjct: 3 KFMKLALKLAKKGTGRVSPNPLVGAVIVKDGKIISTGYHKRYGDFHAERNAILNAKTSLE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 G+T +V LEPC H+G++PPC II+ I +V + + DP+ V+G+G+ L + GI V Sbjct: 63 GSTLFVNLEPCCHHGKTPPCTDLIIKSKISQVFISILDPNPLVNGKGVDILRKNGIEVHV 122 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV---H 184 ++E E ++ +K ++ LK+A++ D I C ++ + +I+KN H Sbjct: 123 GLLEKEASYLNRVFIKFITKKTPYVALKVAMTLDGFI----CDNLGKSKWITKNNFNISH 178 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR AI+VG TVL D+P+LTCR G +P+RIILD KL+ Sbjct: 179 NLRNFFTAIMVGANTVLKDNPQLTCRNGG---RNPIRIILDYEGKLA-----------GK 224 Query: 245 VIIVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V ++ + + R K N Y + R + +L L + S+L+EGGA+V F Sbjct: 225 NFSVFDDQSRTIVFSSRCEKYNGAECYPETRP-EDILERLYSLNIDSVLIEGGASVLSQF 283 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338 + D + L+ + + G+G E Y+++ F Sbjct: 284 YD--FSDELHLFYAPKIFGKGLSAFSGIEKYIDEEF 317 >gi|320449997|ref|YP_004202093.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01] gi|320150166|gb|ADW21544.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01] Length = 383 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 113/380 (29%), Positives = 184/380 (48%), Gaps = 37/380 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G T NP V ++V++G V+G G G HAEV AL + Sbjct: 7 LRELDERFLRRALQLAERARGHTHPNPLVGAVLVREGRVVGEGYHPRAGEAHAEVYALRQ 66 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGEEA+GAT YV+LEPC+H+GR+PPC+ +++ G+ RVV DP+ G GL+ L Sbjct: 67 AGEEAQGATLYVSLEPCNHFGRTPPCSLALLQAGVARVVAAARDPNPLAQG-GLERLRAG 125 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V+ ++E+E + + Q + R + LK A++ D + + ++ S+ Sbjct: 126 GVEVEAGLLEAEAQGQNEVFFHVQQKGRPFVLLKAALTLDGKVAALSGDARYVSSEESRR 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 R ++VG+GTVL DDP LT R + P++++LD + Sbjct: 186 VAQAYRQWLPVVMVGVGTVLKDDPWLTVREPDFRPFPLMLEPPPLRDPVKVVLDTEGRTP 245 Query: 232 LDSKIIKTALL---APVIIVTENDDPVLAL-AFRKKNINIIYCDCR----DLKKLLTILV 283 ++I + A V ++ P L A + ++ L L +L+ Sbjct: 246 PTARIFQKGPRGEPARVYVLVGKGAPKDRLRALEEAGARVVELPREGGRVSLDGALHLLL 305 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-------- 335 G+ +L+EGG +A +F LVD + L+ + V+GEG G+LE Sbjct: 306 EEGLDGILLEGGPRLAGAFWERGLVDKLALFVAPKVLGEG-------RGFLEGFALERMA 358 Query: 336 --KNFMCVRRDYFGSDVCLE 353 K VR+++ G D+ LE Sbjct: 359 EAKRLRLVRKEWLGEDLWLE 378 >gi|318057036|ref|ZP_07975759.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actG] Length = 364 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 168/327 (51%), Gaps = 11/327 (3%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 +G T NP V C+++ G V G G G PHAE+ AL AGE ARG TA VTLEPC Sbjct: 21 LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139 H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+ ++E E Sbjct: 81 HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGLLEREAADVNA 139 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+LT R H+T K A S D A S IT ++ VH LRA DA+LVG GT Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199 Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 DDP L R + G + P+R++LD + ++++ A AP ++ +D P A Sbjct: 200 ARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLDDA--APTLVALADDAPAPA 255 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + DL LL L R V +L+EGGA +A +F+ + D ++ Y + Sbjct: 256 HGAELLRLPRAAHGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTDRVVGYLAP 315 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD 344 +++G G P+ L + + +R D Sbjct: 316 VLLGAG--PAALTDAGIPTLTAALRLD 340 >gi|224536352|ref|ZP_03676891.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus DSM 14838] gi|224522049|gb|EEF91154.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus DSM 14838] Length = 348 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/318 (33%), Positives = 168/318 (52%), Gaps = 19/318 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ E Sbjct: 6 EEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGKAHAEVNAIRSVKET 65 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG- 123 + + +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 66 SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGR 125 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISK 180 +IV ++E E + + ++T R +ITLK A S D I + P+ + ++ Sbjct: 126 EVIVG-VLEDECRHLIKRFITFHTLHRPYITLKWAESADGFIDLCRTEGNPVILSTPLTS 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA+ AILVG T D+P L R SP+R+++D LS + + Sbjct: 185 MLVHKKRAEHSAILVGTRTAKLDNPSLNVR--NWYGRSPIRLVIDRKQSLSPTLHLFDGS 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298 +L ++ TE+ L N+ + D + L +++ IL RG+ SLLVEGG+ + Sbjct: 243 VLT--LVFTEHFHDALP------NVEYLPIDFQQDILPQIMQILYERGIQSLLVEGGSTL 294 Query: 299 AHSFINSRLVDSIILYRS 316 SFI++ L D + + S Sbjct: 295 LQSFIDAGLWDEVYVEES 312 >gi|262182497|ref|ZP_06041918.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] Length = 342 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 147/306 (48%), Gaps = 34/306 (11%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ G V+G G T G PHAEV AL +AG++ARG TA VTLEPC+H Sbjct: 26 GTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKARGGTAVVTLEPCNH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFLHA 140 GR+ PCAQ +I+ + V DP + G G L + GI V ++ +E L Sbjct: 86 TGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVGQLSAPTERADALEP 144 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R H+TLK A S D S ITG ++ VH R Q DAIL+G GT Sbjct: 145 WLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRDRTQRDAILIGTGTA 204 Query: 201 LADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LAD+P LT R L+ P R++ + S+ + Sbjct: 205 LADNPSLTARFPDGSLRPQQPRRVV--------IGSRNVSHG------------------ 238 Query: 259 AFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 K N+ + + ++ L L G +LVEGGA +A SF+ VD I Y Sbjct: 239 --GKTNLERLGFEHYASPQEALAELYTTGARDILVEGGAGLATSFMELGFVDRIQAYIGN 296 Query: 318 IVIGEG 323 +V+GEG Sbjct: 297 VVLGEG 302 >gi|123968996|ref|YP_001009854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. AS9601] gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. AS9601] Length = 364 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 102/357 (28%), Positives = 171/357 (47%), Gaps = 9/357 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + TS NP V +I+ K+G +I G G PHAE A ++ Sbjct: 10 KWMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKKDP 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G + YV LEPC H GR+PPC +I GI++ + ++DPD RV+G+G++ L + GI V Sbjct: 70 KGGSIYVNLEPCCHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQVH 129 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E +A++ R + ++ K A+S D I + S IT S+ VH Sbjct: 130 LGLCKKESLDLNNAFIHRNITNKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ DAI++G T+ D+P LT R GL+ P+R++ L S + ++ Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L K++ I + + + IL RG +L E G +A + I S Sbjct: 248 IYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRGCNKVLWECGPRLATAAIKSN 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358 + II + + ++G +PL E G + + + G D+C++ KN Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSESQHSLIGDDICVKGSLKN 364 >gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109] gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109] Length = 354 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 166/309 (53%), Gaps = 8/309 (2%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ + G ++G G A G HAEV AL +AG+ ARG T VTLEPC H Sbjct: 18 GHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDAARGGTLVVTLEPCCH 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L + G+ ++ ++ E + A Sbjct: 78 HGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEVISGVLREEARQQNRA 137 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R LK A+S D + S I+G +++ VH LR+ DA++VG GTV Sbjct: 138 FLHRVRTGRPFGVLKWAMSLDGRTALPNGVSQWISGPSARDWVHRLRSGMDAVVVGGGTV 197 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DDP LT R G + P+R++L L +++ TA LAP ++ D + L Sbjct: 198 RGDDPLLTSR--GRRSPEPLRVVLSRSLDLPNQAQLWDTA-LAPTLVAHGPDADLRRLPS 254 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + + C+ ++L+ L RG +L E G +A + I V I + ++ Sbjct: 255 GPEELGLSACEP---QQLMEALAKRGCNQVLWECGPELAAAAIRQGCVQEIAAVVAPKLM 311 Query: 321 GEGGIPSPL 329 G +PL Sbjct: 312 GGMAARTPL 320 >gi|227833015|ref|YP_002834722.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] gi|227454031|gb|ACP32784.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] Length = 332 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/306 (35%), Positives = 147/306 (48%), Gaps = 34/306 (11%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ G V+G G T G PHAEV AL +AG++ARG TA VTLEPC+H Sbjct: 16 GTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKARGGTAVVTLEPCNH 75 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM-MESEGKIFLHA 140 GR+ PCAQ +I+ + V DP + G G L + GI V ++ +E L Sbjct: 76 TGRTGPCAQALIDASVAAVYYLHPDPTPQAGG-GSTTLRRAGITVGQLSAPTERADALEP 134 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R H+TLK A S D S ITG ++ VH R Q DAIL+G GT Sbjct: 135 WLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRDRTQRDAILIGTGTA 194 Query: 201 LADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LAD+P LT R L+ P R++ + S+ + Sbjct: 195 LADNPSLTARFPDGSLRPQQPRRVV--------IGSRNVSHG------------------ 228 Query: 259 AFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 K N+ + + ++ L L G +LVEGGA +A SF+ VD I Y Sbjct: 229 --GKTNLERLGFEHYASPQEALAELYTTGARDILVEGGAGLATSFMELGFVDRIQAYIGN 286 Query: 318 IVIGEG 323 +V+GEG Sbjct: 287 VVLGEG 292 >gi|329768554|ref|ZP_08260041.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341] gi|328836595|gb|EGF86254.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341] Length = 356 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/324 (34%), Positives = 165/324 (50%), Gaps = 28/324 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA 67 FM+ AL ++ T TNP V +IVKD ++ RG GC HAE A+ + E+ Sbjct: 5 FMNLALLEAKRGAKYTHTNPLVGAIIVKDNKIVARGSHLRYGCEHAEKNAISTCKTPEKI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC+H G+ PPC + I++ GI +VVV DP+ VSG+G+++L GI + Sbjct: 65 FNSTLYVTLEPCNHKGKQPPCTEAILKMGISKVVVAQLDPNPIVSGKGIKFLRDNGIEVT 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E +AY +KR ++ LK A S D + ITG + V Sbjct: 125 TGILEKEAYNLNYAYNLFHTQKRPYVVLKQATSLDGKLAFTN-ERTQITGKEVYDFVRKE 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP------HFKLSL---DSKII 237 R AILVG TVL D+P+LT L + P RIILD H +L+L DS Sbjct: 184 RDNYQAILVGAKTVLIDNPKLTGASTSL--YPPKRIILDKEGTIFQHKELNLFKDDS--- 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + VI+ ++ + L ++ II + +K++LT + G+ S+ VEGG Sbjct: 239 -----SEVIVFSKYKNEDLP-----SHVTIITPNEFTIKEILTEIAKLGIQSVYVEGGPC 288 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 + F+ S D +I Y S ++G Sbjct: 289 IHDQFLASGYWDEVISYISPTLLG 312 >gi|239905200|ref|YP_002951939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio magneticus RS-1] gi|239795064|dbj|BAH74053.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio magneticus RS-1] Length = 381 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 37/342 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L EA E Sbjct: 6 DAVFMARALELAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLREAEER 65 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVTLEPC+H+G++PPC++ ++E G+ RVV+ DP+ V+G G + L Q G Sbjct: 66 GIDPAGATMYVTLEPCNHFGKTPPCSRTVLEAGVSRVVIGCLDPNP-VAGGGAETLRQGG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + VD ++ E + + ++ + R ++TLK+A++ D I S ++G S+ + Sbjct: 125 VAVDVGILGQECRDAVADFVVYKTMGRPYVTLKLAMTLDGRIAARTGDSAWVSGPESRRR 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH +RA S A++VG GT ADDP LT RL ++DP ++ T L Sbjct: 185 VHRMRAASQAVMVGGGTFRADDPRLTHRLE----------VVDPLSGNPQPLAVVVTRSL 234 Query: 243 APV----IIVTENDDPVLALA------------FRKKNINIIYCDCRDLKKL-----LTI 281 P +V E ++ L K+ + + RD +L LT Sbjct: 235 PPADARFALVRERSPSLVFLTSEAEARAAAGLALAKRGVRVYGLPLRDEGELDLLPGLTR 294 Query: 282 LVGRG-VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 L V LL EGG +A + L D + L+ + V+ + Sbjct: 295 LRDEARVFRLLCEGGGGLAGQLVAQGLADELALFYAPKVLAD 336 >gi|313203842|ref|YP_004042499.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-aminO-6-(5-phosphoribosylamino)uracil reductase [Paludibacter propionicigenes WB4] gi|312443158|gb|ADQ79514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paludibacter propionicigenes WB4] Length = 360 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 169/322 (52%), Gaps = 17/322 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68 +M L+ + VG + NP V ++V + +IG G G HAE A+ E E Sbjct: 22 YMHRCLQLAELGVGYVAPNPMVGAVLVCNDKIIGEGYHHRYGEAHAEPNAINSVKEVELL 81 Query: 69 G-ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G +T YV+LEPCSHYG++PPCA I+ GI RVV+ DP+ +V+G+G+ L G+ ++ Sbjct: 82 GQSTLYVSLEPCSHYGKTPPCADLIVSSGIPRVVIGTLDPNPKVAGKGVAKLRNAGVEVI 141 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISKNQ 182 ++E E + + Q ++R ++ LK A ++D + + I+ I++ Sbjct: 142 VGVLEEECRELNKRFFIFQEQRRPYVLLKWAQTRDGFMDRVRTDVSEPPLQISNNITRQL 201 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +RA++ +ILVG TVL D+P LT R SP+RI +D ++ + ++ +L Sbjct: 202 THKMRAENQSILVGANTVLLDNPSLTVR--NWSGRSPVRIAIDRQRRIPDNFNLLDGSLQ 259 Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ TE D + + F K N D ++ +LT L R + S+LVEGG + +S Sbjct: 260 T--IVFTEKDVENRPRIEFVKINF-----DSNSVETILTELYKRNIHSVLVEGGPTILNS 312 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 FI++ D + + + I EG Sbjct: 313 FIDAGCWDEANIEIAPVRINEG 334 >gi|227503568|ref|ZP_03933617.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium accolens ATCC 49725] gi|227075604|gb|EEI13567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium accolens ATCC 49725] Length = 344 Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 174/343 (50%), Gaps = 33/343 (9%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ G V+G G T G HAEV AL AGE+ARG TA VTLEPC+H Sbjct: 26 GTTSPNPPVGAVILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAH 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHA 140 GR+ PCA +I+ GI RV DP +G G Q L+ G+ V R+ +G + + A Sbjct: 86 TGRTGPCATALIDAGIARVFYLHPDP-TPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRA 144 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L +R H+TLK A + D A S ITG ++ VH RA+ DAI++G GT Sbjct: 145 WLRAVKLQRPHVTLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTA 204 Query: 201 LADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LAD+P LT R + L+EH P R+++ K L + K + L L Sbjct: 205 LADNPSLTARFSDGSLREHQPRRVVIG---KRDLQAAGEKASHLQ-------------QL 248 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 F + + ++ L L G +LVEGGA +A FI + D++ Y + I Sbjct: 249 GFEQYDT---------IEGALKELYASGARDVLVEGGAGLAQGFIEAGAADALAAYIAPI 299 Query: 319 VIGEG-GIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358 ++G+G G+ + L +F VR G DV +EY +N Sbjct: 300 LLGQGRGVLANAVAHTLADAPHFTTVRTTSLGPDVLIEYEARN 342 >gi|269795119|ref|YP_003314574.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Sanguibacter keddieii DSM 10542] gi|269097304|gb|ACZ21740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Sanguibacter keddieii DSM 10542] Length = 393 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 102/288 (35%), Positives = 148/288 (51%), Gaps = 41/288 (14%) Query: 51 GCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 G PHAE AL A G + RGATA VTLEPC+H GR+ PCAQ +++ G+ VVV V DP Sbjct: 91 GTPHAEADALARASASGVDVRGATAVVTLEPCNHTGRTGPCAQALLDAGVAEVVVSVGDP 150 Query: 108 DVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166 + SG G+ L G+ V ++ EG+ L +LT R +TLK A S D + Sbjct: 151 NPVASG-GMGHLRSHGVAVRTGLLADEGEELLRVWLTSVRAGRPFVTLKTATSLDGCVAA 209 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--------NGLQE-- 216 A S ITG S+ H +RA DAILVG GT+LADDP LT R +G+ E Sbjct: 210 ADGSSRWITGPQSRAHAHTVRATVDAILVGTGTLLADDPTLTARPPVPEGEVGDGVPEPA 269 Query: 217 -HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 H P+R+++ ++ D+++ R + ++ D+ Sbjct: 270 VHQPLRVVVG-ERAVADDARV------------------------RGGDGRFVHLATHDV 304 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++L L V +LVEGG VA +F+ + +VD I Y + +++G+G Sbjct: 305 HEVLARLAALEVRHVLVEGGPTVATAFVTAGVVDEIHSYVAPVLVGDG 352 >gi|89897925|ref|YP_515035.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56] gi|89331297|dbj|BAE80890.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56] Length = 377 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 97/306 (31%), Positives = 155/306 (50%), Gaps = 8/306 (2%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C+IVK+G +IG G G PHAE +A+ E G YVTLEPC HYG +PP Sbjct: 29 NPWVGCVIVKNGRIIGEGYHKKKGQPHAEEEAVNSTTESIEGCDVYVTLEPCCHYGSTPP 88 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146 C +I+ + V V + DPD RVSG+G+ L GI + + + E + L +Y+ ++ Sbjct: 89 CVNLLIKHKVSTVYVALLDPDGRVSGKGIAALRNAGIRVYVGLGKEEAESSLKSYIYQRT 148 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + I +K A + D + + S IT ++ V +RA S AI++G TVL DDP Sbjct: 149 YGKPWIVIKSAATLDGQVADSDGQSQWITCPEARADVGKIRASSQAIVIGSKTVLQDDPL 208 Query: 207 LTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 LT R L + P+R+++D + +K+ + + T + + Sbjct: 209 LTARKPSGELYSNQPLRVVVDSSGIVPPQAKVFHVPGKSLYVTTTRSSSEHIK-NIEDLG 267 Query: 265 INIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + ++ R DL +L+ L + V +LVEGG+ + SF+ RL ++++LY + Sbjct: 268 VEVLVTQPRESKVDLHELVAYLSNKTVLQVLVEGGSILHTSFLKERLANALVLYLGPKIF 327 Query: 321 GEGGIP 326 G+ P Sbjct: 328 GDQRKP 333 >gi|29840652|ref|NP_829758.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC] gi|29835002|gb|AAP05636.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC] Length = 368 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 172/345 (49%), Gaps = 10/345 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ NP V C+IVK+G +IG G G HAE A+ G Sbjct: 11 FMRRAIELGEKGRFSAPPNPWVGCVIVKNGQIIGEGYHEKRGQLHAEENAINSTSVSVEG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 + YVTLEPC HYG +PPC +I+ + V V + DPD RV+G+G+ L + GI + + Sbjct: 71 SEVYVTLEPCCHYGNTPPCVNLLIKHKVSTVYVALLDPDSRVAGKGVASLKEAGIRVFEG 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + E + L +Y+ ++ + +K A + D + S IT ++ V LRA Sbjct: 131 LGKKEAEESLKSYIHQRTYGTPWVVIKSAATVDGQTADSHGKSQWITCPEARADVGKLRA 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 S AI+VG TVL D+P LT R L H P+R+++D + +KI + + + Sbjct: 191 SSQAIVVGSKTVLQDNPLLTAREPSGELYSHQPLRVVVDSLGNVGPQAKIFHSHGKSLYV 250 Query: 247 IVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T+ + D + ++ ++I+ + RD L KL++ L + + +LVEGG + + Sbjct: 251 TTTQCSKDHIKSI--EDLGVDILVTEPRDSRVNLHKLMSYLATKQILQVLVEGGPVLHTA 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 F+ RL +++++Y + G+ P + GY ++ + +F Sbjct: 309 FLKERLANALVIYLGPKIFGDQRKPLFGDLGYQLQSAQKILPKFF 353 >gi|325478589|gb|EGC81701.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii ACS-065-V-Col13] Length = 357 Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 112/342 (32%), Positives = 165/342 (48%), Gaps = 22/342 (6%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TNP V ++ KDG +I RG HAE+ E A GAT V LEPCSH+ Sbjct: 19 GKVLTNPMVGAVLYKDGKIIARGYHKSYYDDHAEIDCFNNLNESAEGATLVVNLEPCSHF 78 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 G+ PPC +I ++RVV+ D + +V G+ L + GI ++ ++E EG+ + Sbjct: 79 GKHPPCVDEVIRRKVKRVVISNTDTNPKVD--GISKLKEAGIEVITGVLEEEGEKLNEKF 136 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 R + LK A S D I S I+ S+ VH LR+ DAI+VG T+ Sbjct: 137 FFNMKYNRPLVALKYAQSLDGKIATENFDSKWISNEESRLFVHKLRSDYDAIIVGRNTLE 196 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVL 256 D+P LT R+ NG+ P R+I+ KL L ++ K II T + + V Sbjct: 197 TDNPRLTSRITNGVD---PFRVIVTSKAKLDLGYEVFKENSDNKTIIATNSKIDLGEGVK 253 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 L + KN ++ DL LL + + S+LVEGG+ + +SF+ + LVD I + + Sbjct: 254 VLTLKDKNGSV------DLNDLLDRIYELNIGSVLVEGGSVLNNSFLEADLVDKIYQFMA 307 Query: 317 QIVI-GEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353 IV+ G+ + + +G K F FGSDV E Sbjct: 308 PIVVSGKNSRSAFVGKGAKLIKDAKRFRIDEIKRFGSDVMFE 349 >gi|325288196|ref|YP_004263986.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489] gi|324323650|gb|ADY31115.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489] Length = 350 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 107/341 (31%), Positives = 171/341 (50%), Gaps = 26/341 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +++ ++ ++ +G T NP V LIV + +IG G T+ G HAEV A+ +++ Sbjct: 6 KYILRCIQIAKNGLGSTFPNPMVGALIVHNNAIIGEGFTSPYGGSHAEVNAINSIKDKSV 65 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + +T YVTLEPCSHYG++PPCA II+ I +V+ + DP +V+G G++ L G V Sbjct: 66 LKESTIYVTLEPCSHYGKTPPCADLIIKHKIPNIVIGLKDPHEKVAGNGIKKLRAAGCNV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVP----ITGFIS 179 ++E E + + +L +KR +I LK A + D I + P IT + Sbjct: 126 TIGVLEEECREHHNRFLCFYEKKRPYIILKWAETNDGFIAPLQEKRSATPEPFWITTKAA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH R++ ILVG T++ D+P+L R SP RII+D + K+ I+ T Sbjct: 186 RQLVHQWRSEEQGILVGTNTIIEDNPKLDVR--NWHGKSPTRIIIDQNLKIDASKNILNT 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL-----TILVGRGVTSLLVEG 294 ++ VI N + L IIY + + KK L IL + S+++EG Sbjct: 244 SVKTIVITKESNKNEQLQ--------GIIY-ESVNFKKPLAMQICNILHKHNILSVIIEG 294 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 G+ +FIN L D ++ + GI +P G L+ Sbjct: 295 GSKTLQTFINENLWDEARVFTGTTNFNK-GIAAPKFTGKLK 334 >gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44] gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44] Length = 362 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 105/322 (32%), Positives = 162/322 (50%), Gaps = 8/322 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G + Sbjct: 1 MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+ V Sbjct: 61 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E + + +R + + +K A S D + + S IT ++ H Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ IL GIGTVL D+P + R + P ++D + LD+ ++K + Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVR-DVDTPRQPRIAVVDSKLDIPLDAHVLKAPSGCLI 239 Query: 246 IIVTENDDPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + + L A I + + DL +L L RG L VE G + S I Sbjct: 240 YTCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLI 299 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 LVD ++ Y++ ++G G + Sbjct: 300 REGLVDELLFYQAPKLLGTGAM 321 >gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter alactolyticus ATCC 23263] gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter alactolyticus ATCC 23263] Length = 374 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 108/326 (33%), Positives = 173/326 (53%), Gaps = 8/326 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL +R +G TS NP V C++V++G+V+ G G HAE AL ++ Sbjct: 16 FMRRALALARQGMGHTSPNPMVGCVVVQNGVVVAEGYHERVGGYHAERNALTHCEKDLSD 75 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 A YVTLEPC HYG++PPC + IIE GI RV V D + +V+GRG++ L GI +V Sbjct: 76 ADLYVTLEPCCHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKILEAAGIEVVTG 135 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + + + + K A++ D I A + ++G S+ QV +R Sbjct: 136 ILETKCRKLNEVFYHYMTMRTPFVVSKYAMTLDGKIACASGDAKWVSGEASRAQVQRMRK 195 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 Q I+VGIGTV+ADDP L CR+ + P+RI+ D + + L S+I++TA PVI+ Sbjct: 196 QYSGIMVGIGTVMADDPMLNCRIEAGVD--PVRIVCDSNLHIPLASRIVQTAGDIPVIVA 253 Query: 249 TENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 A A + + DL L+ +L R + S+L+EGGA + + Sbjct: 254 CTETAAASAKATALQAAGVTVLPAGDGTRVDLNILMRLLGRREIDSVLLEGGATLNAAAF 313 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL 329 + +V+ ++ + + ++G P P+ Sbjct: 314 EAGVVNKVVAFIAPKLVGGAAAPPPV 339 >gi|332662070|ref|YP_004444858.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis DSM 1100] gi|332330884|gb|AEE47985.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis DSM 1100] Length = 351 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/340 (32%), Positives = 165/340 (48%), Gaps = 21/340 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+++ +R G S NP V ++V D +IG G G HAEV AL R Sbjct: 7 RYITRCFDLARMGAGSVSPNPMVGAVLVYDNKIIGEGYHQKYGGAHAEVNALASVSLSNR 66 Query: 69 G----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +T YV+LEPC +G++PPC II+ I RVV+ D V GRG++ L GI Sbjct: 67 PLIPESTLYVSLEPCCIFGKTPPCTNLIIQEKIPRVVISCLDLTPEVKGRGVELLRAHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E EG+ ++R ++ LK+A++ + IT ++K V Sbjct: 127 EVTTGVLEKEGQALAATRNVSVSQQRPYVILKMAITSNGYFAPLDRSQFWITQTLTKRLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R +SDAILVG T L DDP+L RL SP+RI+LD +L K+ Sbjct: 187 HRWRMESDAILVGTTTALMDDPQLDNRL--YYGKSPLRIVLDRRLQLPNSLKVFSDG--Q 242 Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P +I+TE + + + + ++N DL +L GV +LVEGG V S Sbjct: 243 PTLIITEREKSINSASHLHYLSMNFGETFWPDLLAILWREYKLGV--ILVEGGQKVLSSL 300 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338 I++ L D ++++IG+ GIPSP G EKN Sbjct: 301 IDTGLWD-----EARVLIGQKSLTVGIPSPTLPGSPEKNL 335 >gi|145224309|ref|YP_001134987.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK] gi|315444641|ref|YP_004077520.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1] gi|145216795|gb|ABP46199.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK] gi|315262944|gb|ADT99685.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1] Length = 333 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 161/328 (49%), Gaps = 57/328 (17%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+AA+ S G T NP V +I+ DG + G G TA G PHAEV AL AGE A G Sbjct: 7 MAAAIVQSERVKGRTYPNPPVGAVILDSDGEIAGVGATAPTGGPHAEVVALRRAGERAAG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD--------------VRVSGRG 115 TA VTLEPC+H+GR+PPC +I+ G+ V V DP+ VRVS Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALIDAGVAAVAFAVADPNPAAAGGAARLAAAGVRVS--- 123 Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 G++ D + + +LH +Q + H+T K A S D A S IT Sbjct: 124 ------AGVVADAVTGGPLREWLH----KQRTGKPHVTWKFAASVDGRSAAADGTSQWIT 173 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233 S+ VH RA +DAI+ G GTV ADDP LT RL L +H P+R+++ ++S D Sbjct: 174 SEASRADVHRRRAAADAIVAGTGTVFADDPALTARLPDGSLADHQPLRVVVG-MREISPD 232 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + ++ NDD + RD +++ L R T +LVE Sbjct: 233 ATVL-------------NDD-----------SRTMVIRTRDPHEVIQALTDR--TDVLVE 266 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG 321 GG +A +F+ + +D I+ Y + I++G Sbjct: 267 GGPTLAGAFLRAGAIDRILAYVAPILLG 294 >gi|332703475|ref|ZP_08423563.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str. Walvis Bay] gi|332553624|gb|EGJ50668.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str. Walvis Bay] Length = 380 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 88/221 (39%), Positives = 129/221 (58%), Gaps = 7/221 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM AL + G T+ NP V ++V+DG V+ G G PHAE +A+ +A G + Sbjct: 7 FMRRALELAERCRGFTAPNPCVGAVLVRDGQVVAEGWHKIYGGPHAEREAIADARAKGVD 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 YVTLEPCSH+G++PPC + I+E GIRRV V D + V GRG ++L KG+ V Sbjct: 67 TSTCDMYVTLEPCSHHGKTPPCTEAILEAGIRRVFVGCKDLNPTVPGRGTEYLLSKGVQV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E E + + ++ + + R+ TLK+A++ D IG ++G S +V L Sbjct: 127 ELGILEQECRDAIADFMLWKTQGRAWCTLKLAMTLDGRIGGPTGKPESVSGPESHRRVQL 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN---GLQEHSPMRII 223 LRA+SDA+L+G GT+ ADDP LTCRL Q P+ I+ Sbjct: 187 LRARSDAVLIGGGTLRADDPRLTCRLQPEGNAQVKRPLAIV 227 >gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726] gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726] Length = 307 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 168/331 (50%), Gaps = 32/331 (9%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 ++ G V+G G T G HAEV AL AGE+ARG TA VTLEPC+H GR+ PCA +I Sbjct: 1 ILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAHTGRTGPCATALI 60 Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHI 152 + GI RV D +G G Q L+ G+ V R+ +G + + A+L +R H+ Sbjct: 61 DAGIARVFYLHPD-STPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRAWLRAVKLQRPHV 119 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 TLK A + D A S ITG ++ VH RA+ DAI++G GT LAD+P LT R + Sbjct: 120 TLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTALADNPSLTARFS 179 Query: 213 --GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L+EH P R+++ K L + K + L L F + + Sbjct: 180 DGSLREHQPRRVVIG---KRDLQAAGEKASHLQ-------------RLGFEQYDT----- 218 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPL 329 ++ L L G +LVEGGA +A SFI + VD++ Y + I++G+G G+ + Sbjct: 219 ----IEGALKELYASGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLGQGRGVLANA 274 Query: 330 EEGYLEK--NFMCVRRDYFGSDVCLEYIGKN 358 L +F VR G DV +EY +N Sbjct: 275 VAHTLADAPHFTTVRTTSLGPDVLIEYEARN 305 >gi|312131512|ref|YP_003998852.1| riboflavin biosynthesis protein ribd [Leadbetterella byssophila DSM 17132] gi|311908058|gb|ADQ18499.1| riboflavin biosynthesis protein RibD [Leadbetterella byssophila DSM 17132] Length = 322 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 106/339 (31%), Positives = 166/339 (48%), Gaps = 33/339 (9%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 +M AL + S NP V C+IV + +IG G G PHAEV A++ +++ Sbjct: 3 YMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +T YVTLEPC+H+G++PPCA+ +I+ +++VVVC DP +V+G+G+ L GI V+ Sbjct: 63 SESTVYVTLEPCAHFGKTPPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVE 122 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ EG+ + R ++ LK A S+D I G + I+ I+ QVH Sbjct: 123 VGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFISAEGGKPIKISHPITDIQVHRW 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAIL+G T D+P+L R ++ P IIL + L +K K Sbjct: 183 RAEEDAILIGKNTADLDNPQLNVRY-WTEDKQPKPIILGQPTRQDLRAKGAK-------- 233 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I+ + ++L ++L L G+ S+LVEGG + SFI Sbjct: 234 ---------------------IFPNGKNLTEILRQLAQDGIQSILVEGGTKIHTSFIEEG 272 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345 L D I + + I I G L +G + + R D+ Sbjct: 273 LFDEIRVIQGDIEILNGVKAPQLPDGLILTDHHTYRNDH 311 >gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 363 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 105/316 (33%), Positives = 156/316 (49%), Gaps = 19/316 (6%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---GATAYVTLEPCSH 81 + NP+V C++ KD +G G T G PHAEV AL +A E+ GATAYVTLEPCSH Sbjct: 8 ANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVTLEPCSH 67 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140 +GR+ PC +I+ GI++VV DP+ V+G G L G+ V+ ++ SE + + + Sbjct: 68 HGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVE-VLPSEHPLAIESR 126 Query: 141 -----YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 + +R + K + +K+A S D + S ITG ++ H RA+S AIL Sbjct: 127 ELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARSCAILT 186 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GIGTVLAD P L RL P +++D + LD+ + ND Sbjct: 187 GIGTVLADRPRLDVRLVETPRQ-PHLVVVDSKLETPLDAPFFIAGRAVFIYAAAPNDAKR 245 Query: 256 LALAFRKKNINIIY-CDCR-------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 AL + I+ D DL ++ L R + L VE G + S + L Sbjct: 246 AALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSLVREGL 305 Query: 308 VDSIILYRSQIVIGEG 323 VD ++Y + ++G+G Sbjct: 306 VDEFVVYVAPRLLGQG 321 >gi|189464287|ref|ZP_03013072.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM 17393] gi|189438077|gb|EDV07062.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM 17393] Length = 345 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 112/351 (31%), Positives = 179/351 (50%), Gaps = 22/351 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + ++M ++ ++ + NP V +IV DG +IG G G HAEV A+ + Sbjct: 3 EEKYMRRCIQLAQNGFCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDT 62 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 63 SLLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGR 122 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 V ++E+E + + ++T +R +ITLK A S D I + G P+ + ++ Sbjct: 123 EVTVGVLENECRHLIRRFITFHTLRRPYITLKWAESADGFIDLHRNGGSPVILSTPLTSM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ AILVG T D+P L R SP+R+++D LS + + Sbjct: 183 MVHKKRAEHAAILVGTRTAELDNPSLNVR--NWYGRSPVRLVIDRRLSLSPTLHLFDGNV 240 Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVA 299 P ++ TE+ L + + N +D L +++ +L R + SLLVEGG+ + Sbjct: 241 --PTLVFTEHPHNSLPGVEYLPINFG------QDILPQIMQVLYERNLQSLLVEGGSTLL 292 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SFI++ L D + S I + G+ +P +KN V YFG + Sbjct: 293 QSFIDASLWDEAFVEESPIHL-TSGVNAPKMN---DKNSY-VNEQYFGRSI 338 >gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella petrii DSM 12804] gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella petrii] Length = 380 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/322 (33%), Positives = 168/322 (52%), Gaps = 13/322 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +M AL +R + T+ NP V C+IV+DG V+G G T G PHAE+ AL +A GE Sbjct: 12 WMRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAAARGES 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YVTLEPCSHYGR+PPCA + G RVVV + DP+ +V G+GL L GI V Sbjct: 72 VQGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRAAGIAV 131 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + ++A ++ R +K+A S D + S ITG ++ H Sbjct: 132 TSNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAARADGHA 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+S +L G+GTVL D+P L R +P + ++D F + D+++ A V Sbjct: 192 WRARSCVVLTGMGTVLKDNPRLNVRAVE-TPRAPRKAVVDGDFAIPEDARLFDG---AEV 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T D A +N ++ + DL ++ L + VE GA + Sbjct: 248 IIFTARTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAGAGLGG 307 Query: 301 SFINSRLVDSIILYRSQIVIGE 322 + +++ +D +++Y + +++G+ Sbjct: 308 ALMSAGCIDELLVYLAPVLLGD 329 >gi|296129704|ref|YP_003636954.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM 20109] gi|296021519|gb|ADG74755.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM 20109] Length = 386 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 113/326 (34%), Positives = 163/326 (50%), Gaps = 35/326 (10%) Query: 7 DARFMSAALR--FSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63 DA AA+R F G NP V C+++ + G V+G G G PHAEV AL +A Sbjct: 32 DAAHELAAMRHAFGLAEQGPLGPNPRVGCVLLDRAGAVVGEGWHRGAGTPHAEVAALADA 91 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + RGATA VTLEPC H GR+ PC+ +++ G+ RVVV V DP+ +G G Q L Sbjct: 92 RERGADVRGATAVVTLEPCDHTGRTGPCSVALLQAGVGRVVVSVQDPNPVAAG-GAQRLR 150 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ +V ++ EG L A+L R +TLK+A S D A S IT ++ Sbjct: 151 AAGVDVVTGVLADEGTRTLGAWLPAVRRGRPFVTLKLAASLDGRAAAADGSSRWITSDVA 210 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + H LRA+ AI+VG GT L DDP LT R L EH P+R+++ H ++ +++ Sbjct: 211 RRHAHGLRAEVGAIVVGTGTALVDDPSLTARTGDGSLVEHQPLRVVVG-HREVPAGARL- 268 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 R ++ D +L L R V +LVEGG Sbjct: 269 -----------------------RGPGGELVQVRTHDPAVVLAALHEREVRHVLVEGGPT 305 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 +A +F+ + LVD + Y + +++G G Sbjct: 306 LAAAFLAAGLVDEVHAYVAPVLLGAG 331 >gi|326331206|ref|ZP_08197500.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium Broad-1] gi|325950976|gb|EGD43022.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium Broad-1] Length = 352 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 103/305 (33%), Positives = 150/305 (49%), Gaps = 34/305 (11%) Query: 25 TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83 T NP V C+++ DG +I G G PHAEV AL +AGE ARGATA VTLEPC+H G Sbjct: 28 TYPNPRVGCVLLGADGSMIAEGYHRGPGTPHAEVDALAKAGEAARGATAVVTLEPCNHTG 87 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143 R+ PC+Q +IE G+ RVV DP+ +G G L Q G+ V++ + + L+ T Sbjct: 88 RTGPCSQALIEAGVARVVYAQSDPNPVAAG-GAATLKQAGVEVEQGLYAAEARELNRVWT 146 Query: 144 RQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R E +R ++T K A + D A S ++ ++ H LRA SD +LVG TV Sbjct: 147 RAAELQRPYVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHKLRALSDTMLVGTNTVAV 206 Query: 203 DDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 DDP LT R L++ P+R+++ L D +I Sbjct: 207 DDPALTVR--DLEDRPVGVQPLRVVMG-ERDLPEDRRIFDA------------------- 244 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ RD L L R + +EGG +A +F+ + LVD I++Y + Sbjct: 245 -----QAPSLHLRTRDPHSALAALWERERRHVFLEGGPTLAAAFLEAGLVDEIVVYVAPF 299 Query: 319 VIGEG 323 ++G G Sbjct: 300 LLGAG 304 >gi|171779591|ref|ZP_02920547.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281693|gb|EDT47127.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 351 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/327 (34%), Positives = 168/327 (51%), Gaps = 20/327 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EA 63 D +MS A+ ++ T TNP V +IVKD VI RG G HAE A+ + Sbjct: 1 MDNYYMSQAIAEAKKGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 EE +T YVTLEPC H G+ PPC Q I+ GI++VVV DP+ V+G+GL +L ++G Sbjct: 61 PEELVDSTLYVTLEPCHHRGKQPPCTQAILAAGIKKVVVGQLDPNPLVAGKGLAFLKEEG 120 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V ++E E + Y +R ++ LK AVS D I + G + +T + Sbjct: 121 IEVVTGVLEEEARGLNSHYNFYYENQRPYVVLKQAVSLDGKIAVLGKRTA-LTDAETNRF 179 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R AILVG TVL D+P L G + +R+ILD ++ + + ++ Sbjct: 180 VHDERDDYQAILVGADTVLIDNPRLLGA--GTSLYPIVRVILDEAGRV-FERRDLQ---- 232 Query: 243 APVIIVTENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 I T++ P+L + K ++ +I + +L +L + S+ VEGGAA Sbjct: 233 ----IFTDDSAPILIFSKHKVTDLPSHVKVIDLPEFSIANILRVLYDEKIQSVYVEGGAA 288 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG 324 V +F++S L D II Y + +IG G Sbjct: 289 VHDAFLDSGLWDEIISYVTPKLIGGNG 315 >gi|295424908|ref|ZP_06817620.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus DSM 11664] gi|295065347|gb|EFG56243.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus DSM 11664] Length = 347 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/339 (29%), Positives = 175/339 (51%), Gaps = 10/339 (2%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG 83 T NP V +IVKD V+ G + G HAE A+ + E+ +T YVTLEPC+H+G Sbjct: 15 TWKNPLVGAVIVKDNHVLATGYHHHFGERHAERDAISKLTPEQLFNSTLYVTLEPCNHFG 74 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 + PPC+Q I+ I+RVV+ DP V+G+G+ L + GI + ++ +E + Y Sbjct: 75 KQPPCSQLIVNKHIKRVVIAQIDPHKLVTGKGIAALKENGIQVATGILANEARKLNEHYT 134 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + IT+K A+S D+ + + IT + +VH RA AI++G T + Sbjct: 135 YFYETNQPWITVKQAISLDHKVAVRTNQRTKITNDLVYQKVHSERADYQAIVIGSSTAII 194 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P L ++ ++SP+RI+LD +L LD K+ T A I TEN + + F Sbjct: 195 DNPSLLTNVHT--DYSPIRIVLDRRGRLLKHLDLKLF-TDQKAQTWIFTENKS-LSSHPF 250 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K ++ + + ++ L + + S+ VEGG + SF+++ LV+ +I Y + ++ Sbjct: 251 NNKFVHCFFSKNDSIGAMINELKNQELQSIYVEGGPTLEKSFLDNYLVNELITYIAPDLL 310 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 G G+ + + +F V+ D ++V ++ +N+ Sbjct: 311 GANGVSAVSPSSF--HHFSDVKIDKLNNNVRIDERKQNV 347 >gi|323357080|ref|YP_004223476.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium testaceum StLB037] gi|323273451|dbj|BAJ73596.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium testaceum StLB037] Length = 343 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/322 (34%), Positives = 157/322 (48%), Gaps = 29/322 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 S+ + M AL+ +R G NP V +I+ G ++ G G HAEV AL Sbjct: 2 ASAVEIDAMRRALQLARR--GPRGLNPQVGAVILSPAGEILAEGYHRGAGTAHAEVDALS 59 Query: 62 E-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + A ARGATA VTLEPC+H GR+ PCA +IE G+ RVV +DDP SG G + L Sbjct: 60 QLAPGAARGATAVVTLEPCNHTGRTGPCAVALIEAGVARVVFALDDPTDAASG-GAERLR 118 Query: 121 QKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V++ E E + +H ++ R H+ +K A S D S ITG + Sbjct: 119 AAGVDVEQGPEEESAEALVHDWVALTRTGRPHVVVKWAQSLDGRAAADDGTSQWITGPAA 178 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH RA +DAI+ G GTV ADDP LT R D ++ Sbjct: 179 RRDVHARRATADAIVAGTGTVRADDPALTAR--------------------DEDGSLLPA 218 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L PVII P A+ R+ ++ DL +L L RG+ + VEGG +A Sbjct: 219 QPL-PVIIGESETAPDAAV--RRHPREPLFFATHDLSAVLADLGERGIQRVFVEGGPTLA 275 Query: 300 HSFINSRLVDSIILYRSQIVIG 321 +F+ + L D +++Y + ++IG Sbjct: 276 SAFVRADLADELLVYVAPVLIG 297 >gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Acidovorax sp. JS42] gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Acidovorax sp. JS42] Length = 366 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 108/309 (34%), Positives = 160/309 (51%), Gaps = 11/309 (3%) Query: 24 LTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPC 79 L++ NP V C+I +G ++G+G T G HAEV AL +A G + RGATAYVTLEPC Sbjct: 17 LSNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGCDVRGATAYVTLEPC 76 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138 +H GR+ PC +I+ GI VV + DP+ V+G+G L G+ V+ ++ + Sbjct: 77 AHQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQVEVGPGGTQSRELN 136 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 + +R V + +K A S D + +A S IT ++ H RA++ A+L G+G Sbjct: 137 IGFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGHAWRARACAVLTGVG 196 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 TVLADDP L R P +I+D + ++++ A V+I T D A Sbjct: 197 TVLADDPRLDVR-EIATPRQPHLVIVDSLLQTPANARLFDVADRR-VLIYTARPDAAGAA 254 Query: 259 AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A R + II DL LL L GV L +E G + SF+ LVD ++LY Sbjct: 255 ALRARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNGSFLREGLVDELLLY 314 Query: 315 RSQIVIGEG 323 + I++G+G Sbjct: 315 LAPIMLGQG 323 >gi|126663421|ref|ZP_01734418.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BAL38] gi|126624369|gb|EAZ95060.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BAL38] Length = 346 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 167/329 (50%), Gaps = 14/329 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 ++ + ++ +G T NP V +IV + +IG G G PHAEV A+ +++ Sbjct: 7 YIKRCIELAKNGLGTTYPNPLVGSVIVYENKIIGEGWHKKAGEPHAEVNAVNSVKDKSLL 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT YV+LEPCSH+G++PPC II I VVV DP +V+G G++ L + G V Sbjct: 67 KEATIYVSLEPCSHFGKTPPCCDLIIVNEIPNVVVGTVDPFAKVAGNGIKKLVESGKKVT 126 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183 ++E E + T ++R +I LK A + + I + IT S+ V Sbjct: 127 VGILEDECNELNKRFFTFHQKQRPYIILKWAETANGFIAPISKEEKSPIWITNQYSRQLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + AILVG TVL D+P+L R E++P+R++LD K+S + + + Sbjct: 187 HKWRTEEQAILVGTNTVLDDNPKLDAR--DFSENNPIRVVLDKSGKVSKNYHVKDNS--Q 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I +TE++ A N I+ D ++ + IL + S+++EGG SFI Sbjct: 243 KTIFITESEK--YASTENCNYENTIF-DVNLVRSICDILYKNNIQSIIIEGGTKTIQSFI 299 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 ++ L D ++R + + + GI +P+ G Sbjct: 300 DANLWDEAKVFRGKKIF-QNGIIAPIISG 327 >gi|50954248|ref|YP_061536.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950730|gb|AAT88431.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 341 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 111/314 (35%), Positives = 159/314 (50%), Gaps = 28/314 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68 M AALR + + NP V C+++ DG I +G G PHAE AL + E AR Sbjct: 7 MRAALRLAA-NGPAAGVNPRVGCVLLDADGRTIAKGFHRGAGTPHAEADALGKLPEGGAR 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G TA VTLEPC+H+GR+ PC++ +++ G+ RVV + DP R G G + L Q G+ + Sbjct: 66 GTTAVVTLEPCNHWGRTGPCSEALLDAGVARVVYGIADPGERSRG-GAERLRQGGVEVTG 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ +E + FL +LT R HIT+K A S D A S ITG ++ +VH R Sbjct: 125 GVLAAEIEEFLDDWLTVARLGRPHITVKWASSLDGRTAAADGTSRWITGTAARQRVHEQR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 SDAI+VG GTVLADDP LT R D+ + PV++ Sbjct: 185 EASDAIVVGTGTVLADDPSLTARG---------------------DAGELLPRQPTPVVV 223 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 T P A FR +I DL +++ L RG + VEGG ++ +F+ + L Sbjct: 224 GTRAV-PGDAAVFRHPQ-PVIVEKTHDLVEVVADLHQRGFRRVYVEGGPTLSGAFVAAGL 281 Query: 308 VDSIILYRSQIVIG 321 VD +Y + ++G Sbjct: 282 VDEYAIYLAPSLLG 295 >gi|302517924|ref|ZP_07270266.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78] gi|302426819|gb|EFK98634.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78] Length = 364 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 115/327 (35%), Positives = 167/327 (51%), Gaps = 11/327 (3%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 +G T NP V C+++ G V G G G PHAE+ AL AGE ARG TA VTLEPC Sbjct: 21 LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139 H GR+ PC++ +IE G+RRVV V DP + +G G G+ ++ ++E E Sbjct: 81 HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTQRAAGVDIEHGLLEREAADVNA 139 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+LT R H+T K A S D A S IT ++ VH LRA DA+LVG GT Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199 Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 DDP L R + G + P+R++LD + ++++ A AP ++ +D P A Sbjct: 200 ARTDDPHLAVRGIPGAPQ--PLRVVLDTEGTAVRGGARVLDDA--APTLVALADDAPAPA 255 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + DL LL L R V +L+EGGA +A +F+ + D ++ Y + Sbjct: 256 HGAELLRLPRAARGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTDRVVGYLAP 315 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD 344 +++G G P+ L + + +R D Sbjct: 316 VLLGAG--PAALTDAGIPTLTAALRLD 340 >gi|319778563|ref|YP_004129476.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella equigenitalis MCE9] gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella equigenitalis MCE9] Length = 379 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/328 (33%), Positives = 163/328 (49%), Gaps = 30/328 (9%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATA--YVTLEP 78 L NP V C+IV + +IG G T G HAE+ AL++A G E A A YVTLEP Sbjct: 14 LPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHEDLIADAILYVTLEP 73 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD--RMMESEGKI 136 CSH+GR+PPC +I GI+ VV+ DP+ V G G++ L GI V+ M+E ++ Sbjct: 74 CSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIKVEVGFMLEEVLEL 133 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L + +R + + KIA S D I + S IT S+N H RA+S +L G Sbjct: 134 NL-GFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGHYWRARSSIVLTG 192 Query: 197 IGTVLADDPELTCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 GTVLAD+P+L R L G+ + + II P + + K+ +A V Sbjct: 193 AGTVLADNPKLNVRHFNTPRAPLIGIVDRE-LNIITKPKLSIFSNPKVYVFGEMAKV--- 248 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 L L +NI ++ C D L +LL L V + +E G+ + SF Sbjct: 249 -----QDLGLVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGLNTSFY 303 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + L+D ++ Y++ +V+G P ++E Sbjct: 304 EAGLIDELLWYQAPLVLGNCNSPFNIKE 331 >gi|123966659|ref|YP_001011740.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9515] gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9515] Length = 368 Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 159/323 (49%), Gaps = 8/323 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 ++ D ++M A+ + G T+ NP V +I+ K+G +I G + G PHAE A Sbjct: 4 INGIDIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFN 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + AR YV LEPC H+G++PPC II GI++V V ++DPD RVSG+G++ L Sbjct: 64 NLKKNARDGILYVNLEPCCHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLKD 123 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V + E E +++ R + ++ LK A+S D +G+ S IT S+ Sbjct: 124 SGIEVHLGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMDGRVGLKNGKSKWITNKDSR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + VH RA DAI++G T+ DDP LT R G + P+R++ L S Sbjct: 184 SLVHSHRACFDAIVIGGNTLRKDDPLLTSR--GRRNPEPLRVVFTKTLDLPEKSNFWDFN 241 Query: 241 LLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 L +++ + D L I + D L L +L +G ++L E G + Sbjct: 242 LAKTLVVYDSSCADKNFLKRIPEGVEIEELSSDNPIL--LSNLLAKKGCNNVLWECGPKL 299 Query: 299 AHSFINSRLVDSIILYRSQIVIG 321 A S I + + ++ + + ++G Sbjct: 300 ATSAIKAGCIQELMTFIAPKILG 322 >gi|257899304|ref|ZP_05678957.1| riboflavin specific deaminase [Enterococcus faecium Com15] gi|257837216|gb|EEV62290.1| riboflavin specific deaminase [Enterococcus faecium Com15] Length = 364 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 108/316 (34%), Positives = 162/316 (51%), Gaps = 10/316 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEA 67 FM AA+ ++ G T TNP V IVK+G +I G + G HAEV A++ + EE Sbjct: 12 FMLAAIAEAKKGKGNTFTNPLVGAAIVKEGKLISLGAHLHYGESHAEVNAIQNCSSPEEL 71 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +T YVTLEPC+H G+ PPC Q I++ GI VV+ DP+ V+G+G ++L + GI V Sbjct: 72 FNSTLYVTLEPCNHQGKQPPCTQAIVQSGITTVVIGQLDPNPLVAGKGREFLQKHGIKVI 131 Query: 128 RMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +E E L+ + E R +ITLK AV+ D I + IT + ++V Sbjct: 132 VGVEEEKCRALNPFYNHFFEMDRPYITLKQAVTLDGKISIKKGSRHSITSPKAISRVRKE 191 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPV 245 R + I+VG TVL D+P L + P+RI+LD ++ ++ + +PV Sbjct: 192 RGEYQGIVVGSETVLVDNPHLLPDAENI--FPPVRIVLDRRGQILKSPELNLFQKTTSPV 249 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I TEN + L F ++ I Y + + +GV SL VEGGA + +F+ Sbjct: 250 WIFTENHE--LKEIF--PHVTIFYTPKFSFAFFIETMRKKGVQSLYVEGGAKIHDAFLAE 305 Query: 306 RLVDSIILYRSQIVIG 321 L D +I Y + + G Sbjct: 306 SLWDEVISYIAPKLFG 321 >gi|227542162|ref|ZP_03972211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181991|gb|EEI62963.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51866] Length = 324 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 163/365 (44%), Gaps = 52/365 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AA+ VG NP+V C +VK+G VI G T G PHAE+ AL AGE+ARGA Sbjct: 1 MDAAITAGEEAVGRARPNPAVGCALVKNGRVIATGSTQRVGGPHAEIMALRAAGEDARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYVTLEPC+H GR+ PC+ ++E GI VV D + G +L G+ V+ + Sbjct: 61 TAYVTLEPCNHTGRTGPCSLALVEAGIATVVYLTPDTSTPEAAGGGDYLKSHGVEVEYLP 120 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + G L +L Q R T+K+A + D S ITG ++ H R++ Sbjct: 121 VAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGETARAYAHRDRSRR 178 Query: 191 DAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILD----PHFKLSLDSKIIKTALLAP 244 DAILVG GT LAD+P LT R L E+ P +I+ P ++ I+ L Sbjct: 179 DAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRPVPRDYHLYETGFIQVDTLEE 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ + ND +LVEGG V + Sbjct: 239 LVQLPYND-------------------------------------ILVEGGPGVLSTLFT 261 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKNL 359 + LVD+I Y + V+G GIP + G+ K F G DV + Sbjct: 262 NDLVDTIHSYVASAVLG-AGIPL-ISTGWGTSIQDIKRFSRTDTINLGDDVLIVLERHGS 319 Query: 360 CLQEL 364 CLQ L Sbjct: 320 CLQGL 324 >gi|256851712|ref|ZP_05557100.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 27-2-CHN] gi|260661570|ref|ZP_05862482.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 115-3-CHN] gi|256615670|gb|EEU20859.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 27-2-CHN] gi|260547627|gb|EEX23605.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 115-3-CHN] Length = 352 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 19/345 (5%) Query: 7 DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62 D +FM+ A+ + R+H T TNP V ++VKDG V+ G G HAE A+ + Sbjct: 5 DEQFMALAINSASKGRYH---TWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 62 TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V ++ E K Y K +I LK A+S D+ + ITG + Sbjct: 122 NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPD-KRIQITGKAAYE 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH RA AI++G T L D+P L + Q+H P+RI+LD +L + + + Sbjct: 181 QVHRERADYQAIMIGSSTALIDNPTLLTSVK--QDHPPIRIVLDRRGRLLNKNLALFSDK 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A + T+N L +I + L+++L +L V S+ VEGG + + Sbjct: 239 HAQTWLFTQNTK--LTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKT 296 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345 FI +L +I Y S +G + +G+ + +N ++ DY Sbjct: 297 FIEEKLAQELITYFSPTFLGNNAL-----DGFEITENINLIKPDY 336 >gi|295692792|ref|YP_003601402.1| riboflavin biosynthesis protein ribd [Lactobacillus crispatus ST1] gi|295030898|emb|CBL50377.1| Riboflavin biosynthesis protein ribD [Lactobacillus crispatus ST1] Length = 352 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/321 (33%), Positives = 166/321 (51%), Gaps = 6/321 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+ + E Sbjct: 4 DTFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLTPE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L + GI Sbjct: 64 QLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAQLQKNGIQ 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + ++ L+ + + + IT+K A S DN + M G PIT QVH Sbjct: 124 VTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMRGQ-RTPITNQAVYQQVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA AI++G T + DDP L R N ++ P+RII+D +L ++ + P Sbjct: 183 SERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDTNP 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 I T+N + F I II+ ++++ L + + S+ VEGG + + +N Sbjct: 241 TWIFTQNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAIMN 299 Query: 305 SRLVDSIILYRSQIVIGEGGI 325 V+ +I Y + I +G+ G+ Sbjct: 300 EIFVNEVIKYTAPIFLGDEGV 320 >gi|282933540|ref|ZP_06338910.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|297205330|ref|ZP_06922726.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii JV-V16] gi|281302283|gb|EFA94515.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|297149908|gb|EFH30205.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii JV-V16] Length = 351 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 109/345 (31%), Positives = 169/345 (48%), Gaps = 19/345 (5%) Query: 7 DARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE- 62 D +FM+ A+ + R+H T TNP V ++VKDG V+ G G HAE A+ + Sbjct: 4 DEQFMALAINSASKGRYH---TWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKL 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 61 TPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSH 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V ++ E K Y K +I LK A+S D+ + ITG + Sbjct: 121 NISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPD-KRIQITGKAAYE 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH RA AI++G T L D+P L + Q+H P+RI+LD +L + + + Sbjct: 180 QVHRERADYQAIMIGSSTALIDNPTLLTSVK--QDHPPIRIVLDRRGRLLNKNLALFSDK 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A + T+N L +I + L+++L +L V S+ VEGG + + Sbjct: 238 HAQTWLFTQNTK--LTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKT 295 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-LEKNFMCVRRDY 345 FI +L +I Y S +G + +G+ + +N ++ DY Sbjct: 296 FIEEKLAQELITYFSPTFLGNNAL-----DGFEITENINLIKPDY 335 >gi|332519663|ref|ZP_08396127.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4] gi|332044222|gb|EGI80416.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4] Length = 321 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 107/332 (32%), Positives = 162/332 (48%), Gaps = 35/332 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68 M A++ + +G T NP V +IV + I+IG G T+ G HAEV A+ + + Sbjct: 1 MQRAIQIANNGLGTTRPNPMVGAVIVHNNIIIGEGFTSAYGGNHAEVNAINAVKNKDLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRGLQWLSQKGIIVD 127 +T YVTLEPCSHYG++PPC+ II I VV+ CVDD + V+G+G++ L V Sbjct: 61 KSTLYVTLEPCSHYGKTPPCSDLIIHHNIPNVVIGCVDD-NPEVAGKGIKKLMGANCKVT 119 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183 ++E++ K + T +KR +I LK A + + I V IT IS+ V Sbjct: 120 LGILENKCKEHHKRFFTFHNKKRPYIILKWAETSNGYIAPKTRTEQKPVWITNKISRQLV 179 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RAQ AILVG TV+ D+P L R ++P RI+LD K LL+ Sbjct: 180 HKWRAQEQAILVGTTTVIKDNPTLNVR--DWSGNNPTRIVLD------------KNNLLS 225 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + N+ + + N ++ + L + + S+++EGGA FI Sbjct: 226 KEYTIFNNEAETFTIKAQTAN------------EICSFLFKQTINSVIIEGGAKTLQLFI 273 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 N L D +++ I + GI +P G L+ Sbjct: 274 NENLWDEARVFKGNITFTD-GIKAPNFSGELK 304 >gi|148272143|ref|YP_001221704.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830073|emb|CAN01002.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 108/299 (36%), Positives = 145/299 (48%), Gaps = 31/299 (10%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRS 85 NP V C+I+ G VI G G HAEV AL + ARG+TA VTLEPC+H GR+ Sbjct: 41 NPRVGCVILDARGRVIAEGRHRGAGSAHAEVDALRQLPAGAARGSTAVVTLEPCNHTGRT 100 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144 PCA +IE G+ RV V DP V SG G L GI ++D ++ E FL +L Sbjct: 101 GPCAAALIEAGVARVAYAVADPGVESSG-GAARLRAAGIEVIDGVLADEAAAFLRVWLGS 159 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R +T K A S D I A S ITG ++ VH RA++DAILVG GTVLADD Sbjct: 160 ARLGRPFVTAKWASSLDGRIAAADGTSRWITGPAAREDVHRRRAEADAILVGTGTVLADD 219 Query: 205 PELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 P LT R +G+ H P ++L D I A A + Sbjct: 220 PALTARRPDGIPYPHQPAPVVLG-------DRAIPDDA------------------AVHR 254 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +I D + L RG+ + VEGG + + + + LVD ++ Y + +++G Sbjct: 255 HPRRLIRITGHDPAAAIAELGRRGIRHVFVEGGPTIVSALVAAGLVDEVVAYLAPVLLG 313 >gi|170783175|ref|YP_001711509.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis subsp. sepedonicus] gi|169157745|emb|CAQ02947.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis subsp. sepedonicus] Length = 355 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 143/299 (47%), Gaps = 31/299 (10%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYGRS 85 NP V C+I+ G VI G G HAEV AL + ARGATA VTLEPC+H GR+ Sbjct: 40 NPRVGCVILDASGRVIAEGRHRGAGSAHAEVDALRQLPAGGARGATAVVTLEPCNHTGRT 99 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144 PCA ++E G+ RV V DP SG G L G+ +V ++ E FL +L Sbjct: 100 GPCAAALVEAGVARVAYAVADPGAESSG-GAARLRAAGVEVVPGVLADEAAAFLQVWLGS 158 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R +T K A S D I A S ITG ++ VH RA++DAILVG GTVLADD Sbjct: 159 ASLGRPFVTAKWASSLDGRIAAADGSSRWITGTAAREDVHRRRAEADAILVGTGTVLADD 218 Query: 205 PELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 P LT R +G+ H P ++L D I A A + Sbjct: 219 PALTARRPDGIPYPHQPAPVVLG-------DRAIPDDA------------------AVHR 253 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +I D L L RG+ + VEGG + + + + LVD ++ Y + +++G Sbjct: 254 HPRRLIRLPGHDPAAALDELGNRGIRHVFVEGGPTIVSALLAAGLVDEVVAYLAPVLLG 312 >gi|154250091|ref|YP_001410916.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum Rt17-B1] gi|154154027|gb|ABS61259.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum Rt17-B1] Length = 365 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 159/319 (49%), Gaps = 10/319 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65 RFM A+ ++ +G + NP V +IVKDG ++ G Y G HAE A+ AG Sbjct: 12 RFMKLAIVIAKKGIGFVNPNPPVGAVIVKDGKILSMGYHKYYGGYHAERDAILSALNAGI 71 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + G+T YVTLEPC HYG++PPC II+ GI+ V + DP+ +SG G + L + G+ Sbjct: 72 DISGSTMYVTLEPCDHYGKTPPCTDLIIQSGIKEVYIACTDPN-PISGNGAEKLRKNGVD 130 Query: 126 VDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + E L + + VE ++TLK A + D I S IT + K VH Sbjct: 131 VHIGLLEEEARELAKFFFKSVETGIPYVTLKYAATLDGKIADVNGNSKWITDELRK-VVH 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR++ A+LVG GTV+ D+P L R ++ +P++++LD + K + Sbjct: 190 KLRSEHMAVLVGAGTVIKDNPTLNVRFLKSKKRNPIKVVLDKRGVIFEKIKDLNVFQGEK 249 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 VI+ TE V A N I+ ++ L T+ V S+LVEGG+ + F+ Sbjct: 250 VIVFTEKQ--VSAPELNGVNGVKIFNVLEPIEILKTLYKEERVDSVLVEGGSEIFSQFL- 306 Query: 305 SRLVDSIILYRSQIVIGEG 323 D I + +G+G Sbjct: 307 -PFADEIYGFYGLKALGKG 324 >gi|281357052|ref|ZP_06243542.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC BAA-548] gi|281316610|gb|EFB00634.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC BAA-548] Length = 346 Score = 149 bits (376), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 122/358 (34%), Positives = 173/358 (48%), Gaps = 37/358 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEA 63 D +FM AL +R GLTS NP V +IV+DG +IGRG G PHAE+ AL E+ Sbjct: 8 DQKFMLEALALARMGWGLTSPNPMVGAVIVRDGEIIGRGYHCKAGEPHAEINALIDVEKH 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A+GAT YVTLEPCS GR+P C I GI RVV+ DP+ + +GRG+Q L + G Sbjct: 68 GLDAKGATIYVTLEPCSTVGRTPACTDAIRAAGISRVVIGSLDPNPKHAGRGVQLLEEAG 127 Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I V +E G+I + R + LK+A++ D I A S ITG ++ Sbjct: 128 IQVTVGVERAACGEIN-RPFFKWITTGRPFVILKMAMTLDGKIATADGESKWITGPDARR 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V LR SDAI+VG TV D P LT R P+R+I Sbjct: 187 RVQQLRRLSDAIMVGGETVRQDRPLLTVREPDSWPCQPLRLIASRSM------------- 233 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 D+ L F N ++ + D +LL L R +T LL+EGG +A Sbjct: 234 ----------DEEELEEYFPDGNAELVRLESEEDWGRLLDELGKREITCLLIEGGGELAA 283 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYFGSDVCL 352 S + + VD + + + ++G G P+ G L + V+ ++G D+ + Sbjct: 284 SALQAWAVDYVEFHIAPKLLG-GRDSRPVLGGDNPDSMALAQQLHRVKVTHYGEDIAI 340 >gi|227893613|ref|ZP_04011418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus ultunensis DSM 16047] gi|227864473|gb|EEJ71894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus ultunensis DSM 16047] Length = 352 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 167/340 (49%), Gaps = 23/340 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M+ AL+ ++ T NP V +IVK+ V+ G + G HAE A+ + E Sbjct: 4 DQYYMNLALQEAKKGRFQTWKNPMVGAVIVKNNQVLATGHHIHYGQNHAERDAISKLTPE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC+HYG+ PPC+ I++ I+RVV+ DP V+G+G+ L I Sbjct: 64 QLFNSTLYVTLEPCNHYGKQPPCSDLIVKSKIKRVVIGQVDPHKLVTGKGIAKLKSHNIE 123 Query: 125 ----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 ++ +E K + + Y + IT+K A S D + IT Sbjct: 124 VKTGVLTSKIEELNKFYNYFYRN----NKPWITIKEATSLDYRVSQNKNTRTNITNQSVY 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIK 238 +VH RA AI++G T + DDP L + ++ P+R+I+D +L LD K++ Sbjct: 180 FRVHQERANYQAIMIGSSTAIIDDPSLLTSVKT--DYPPIRVIVDRRGRLLNHLDLKVL- 236 Query: 239 TALLAPVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 T + I T+N D + RKK NI ++ +L +++ L R + S+ VEGG Sbjct: 237 TDHQSLTWIFTQNKDLI-----RKKFNDNIQVLLMKSNELSEVVNKLAQREIQSIYVEGG 291 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 +A SF+N L + +I Y + +G G L G L Sbjct: 292 PTLARSFLNEDLANELIDYIAPTFLGSAGPAGVLPRGNLN 331 >gi|326780548|ref|ZP_08239813.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus XylebKG-1] gi|326660881|gb|EGE45727.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus XylebKG-1] Length = 366 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 118/347 (34%), Positives = 178/347 (51%), Gaps = 13/347 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G L Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVMWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239 VH LRA++DA+LVG GT DDP+L R ++G + P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQ--PLRVVVDTNATAVKPGARVLDA 239 Query: 240 ALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 AP ++ +D P L + DL LL L RGV S+L+EGG Sbjct: 240 --TAPTLVAVADDAPAGHLPEPAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPT 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 +A +F+ + VD ++ Y + +++G G P+ L + + +R D Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLD 342 >gi|19552809|ref|NP_600811.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032] gi|62390479|ref|YP_225881.1| bifunctional riboflavin-specific deaminase/reductase [Corynebacterium glutamicum ATCC 13032] gi|21324366|dbj|BAB98990.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium glutamicum ATCC 13032] gi|41325816|emb|CAF21605.1| PUTATIVE BIFUNCTIONAL RIBOFLAVIN-SPECIFIC DEAMINASE/REDUCTASE [Corynebacterium glutamicum ATCC 13032] Length = 328 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 114/342 (33%), Positives = 167/342 (48%), Gaps = 41/342 (11%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ DG V+G G TA G PHAEV AL AG A G TA VTLEPC+H Sbjct: 19 GTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGVRANGGTAVVTLEPCNH 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 YGR+ PC++ +++ GI V DP +G G +L++ G VD E L + Sbjct: 79 YGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAG--VDTHFLDERIRALEPW 135 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L R H+TLK A + D G S ITG ++ VH R++ DAI+VG GT L Sbjct: 136 LVATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTAL 195 Query: 202 ADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R + GL E+ P R+++ ++ DS + + Sbjct: 196 TDNPSLTARTDTGLYENQPRRVVIGSR-EVPADSNLAR---------------------- 232 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + Y + + L+ L +G +L+EGG +A + + +VD + Y + ++ Sbjct: 233 ------LGYEQYAGIPEALSALWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALL 286 Query: 321 GEGG--IPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGK 357 G G I P E + + + VR+ GSDV +E + K Sbjct: 287 GAGRSVINWPQETTMDQIMRFDTTSVRQ--LGSDVLIEMMRK 326 >gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1] gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Halorhodospira halophila SL1] Length = 371 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 106/308 (34%), Positives = 161/308 (52%), Gaps = 11/308 (3%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V C++V+DG V+ G PHAE AL+ AG A GATAYVTLEPC+HYGR+PP Sbjct: 31 NPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGAAHGATAYVTLEPCAHYGRTPP 90 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146 CA+ +I+ G+ RVVV DP+ RV+G G+ L G+ + + ++ ++ + +L R Sbjct: 91 CARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFLRRMA 150 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + +K+A S D MA S IT ++ VH RA++ A+L G+GTV ADDP Sbjct: 151 GGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRADDPR 210 Query: 207 LTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRK 262 L R E P R++LDP + + + PV+I E + A A R Sbjct: 211 LDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQAP--GPVLIGHAEYVNEARARALRS 268 Query: 263 KNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ ++ L +L L R + + VE G +A S++ D +I+Y + Sbjct: 269 CGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADELIVYTAPH 328 Query: 319 VIGEGGIP 326 ++G+ P Sbjct: 329 LMGDAARP 336 >gi|300812786|ref|ZP_07093184.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496238|gb|EFK31362.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 351 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 107/321 (33%), Positives = 159/321 (49%), Gaps = 10/321 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M A+ +R T NP V +VKDG V+ G + G HAE + + E Sbjct: 4 DEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKLTPE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +T YVTLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+ Sbjct: 64 QLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLE 123 Query: 126 VDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++ E Y ++TLK A++ D+M+ G + ITG + +VH Sbjct: 124 VSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKKGERTA-ITGAEAWTRVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 RA A+L+G T + DDP L + + H P+R++LD +L LD ++ Sbjct: 183 QERAGYQAVLIGSETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSDK-R 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A I+TEN P K + I + + IL +GV S+ EGGA + S Sbjct: 240 AETWILTEN--PDFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESL 297 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + + LV+ +I Y + +G G Sbjct: 298 LAAGLVNDVISYVAPRFLGRG 318 >gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1] gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1] Length = 369 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/324 (33%), Positives = 161/324 (49%), Gaps = 12/324 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M AL + + L+S NP V C L+ DG V+G+G T G PHAEV AL +A GE+ Sbjct: 8 MHQALGLAAQALFLSSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGED 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGATAYVTLEPCSH GR+ PC +I G+ +VV + DP+ +V+G+G L G+ + Sbjct: 68 VRGATAYVTLEPCSHQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVDV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V E + + +R + + +K A S D + S IT ++ H Sbjct: 128 VVGPGADESRELNIGFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGHA 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ +L GIGTVL DDP L R + P ++D + L ++ ++ A Sbjct: 188 WRARACTLLTGIGTVLEDDPRLNVR-DVATPRQPRIAVVDSRLDMPLTARALQGP--AEC 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I T + D A + +I DL +L L RG L VE G + S Sbjct: 245 LIYTSSRDASKTSALQDLGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNGS 304 Query: 302 FINSRLVDSIILYRSQIVIGEGGI 325 + LVD ++LY + ++G GG+ Sbjct: 305 LVREGLVDELLLYLAPKLLGTGGM 328 >gi|298209105|ref|YP_003717284.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus HTCC2559] gi|83849032|gb|EAP86901.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus HTCC2559] Length = 333 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 109/336 (32%), Positives = 161/336 (47%), Gaps = 41/336 (12%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 ++ L+ ++ +G T NP V +IV D +IG G G HAEV A+ +++ Sbjct: 7 YIKRCLQLAKKGLGTTYPNPMVGSVIVYDNKIIGEGWHQIAGLAHAEVNAINAVKDKSLL 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 + +T YV+LEPCSHYG++PPCA II I VV+ DP +V G+G++ L G I Sbjct: 67 KKSTIYVSLEPCSHYGKTPPCADLIIANNIPNVVIGTVDPFAKVKGQGIKKLLDAGCKIT 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQV 183 ++E E + + T KR +I LK A S D + V IT +S+ V Sbjct: 127 VGVLEDECQELNKRFFTFHNSKRPYIILKWAESNDAFLAPKTKHKQQPVWITNLVSRQLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+ AILVG TV D+P LT R NG +P R+++D K LD + Sbjct: 187 HKWRAEEQAILVGTKTVKDDNPSLTTRDWNGP---NPTRLVIDR--KNVLDKSLSVLNDK 241 Query: 243 APVIIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 A ++ +EN N N + YC +L+ S++VEGGA Sbjct: 242 AETVVFSENTS----------NFNNLPQHICEYCHTNNLQ------------SIIVEGGA 279 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 FIN+ L D +++ ++ E G +PL G Sbjct: 280 QTLQHFINANLWDEARVFKGDVMFYE-GTKAPLITG 314 >gi|242278131|ref|YP_002990260.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM 2638] gi|242121025|gb|ACS78721.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM 2638] Length = 377 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/330 (30%), Positives = 169/330 (51%), Gaps = 14/330 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 S D RFM+ A+ + T+ NP+V ++V+DG ++ G + G HAE + + +A Sbjct: 6 SPDERFMARAVELAIRGRNRTAPNPTVGAVMVRDGQIVAEGYHMFCGGLHAERECIADAK 65 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + T YVTLEPC+H+G++PPC + I+E I +VV DP+ + +G G+++L Sbjct: 66 AKGVDMSKCTMYVTLEPCNHHGKTPPCTEGILEASIPHIVVGTRDPNPKAAG-GIEYLES 124 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 KG+ VD+ ++E + K + +L Q + R++ LK+A + D I A ++ S Sbjct: 125 KGVRVDQGVLEEQCKDLISDFLCWQFKDRAYSILKLACTVDGKIAGATGAQEAVSCPESF 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIK 238 + V LR+ A++VG T+ D+P L CRL+ L E P +++ + + D + Sbjct: 185 HDVQHLRSMVGAVIVGGNTLREDNPSLNCRLDPLPEGFSQPKAVVVTNNLPQNHDEYTLT 244 Query: 239 TALLAPVIIVTENDDPVLALA--FRKKNINIIYCDCRD----LKKLLTILVGR-GVTSLL 291 T A I T + A + K I ++ + L+K T+L + V L Sbjct: 245 TTRAADTIFWTSAEQAATKTASELKNKGIEVLPLPSNEKGLILEKGFTMLREKHNVLRTL 304 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 EGG +A S LVD ++Y++ ++G Sbjct: 305 CEGGGRLACSLAEQGLVDEFVMYQAPRILG 334 >gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CC9605] gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605] Length = 349 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 10/319 (3%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ +G ++G G A G HAEV AL +AG+ A+G T VTLEPC H Sbjct: 13 GHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQGGTLVVTLEPCCH 72 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L Q G+ ++ ++ E + A Sbjct: 73 HGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEVISGVLREEARQQNRA 132 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R LK A+S D + S I+G +++ VH LR+ DA++VG GTV Sbjct: 133 FLHRVRTGRPFGILKWAMSLDGRTALPNGASQWISGPPARDWVHRLRSGMDAVVVGGGTV 192 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DDP LT R G + P+R++L L +++ TA +AP ++ + L Sbjct: 193 RGDDPLLTSR--GRRSPEPLRVVLSRSLDLPDQAQLWDTA-VAPTLVAHGPEADPQRLPS 249 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + C+ ++L+ L RG +L E G +A + I V I + ++ Sbjct: 250 GPDELVLSACEP---EQLMEALAQRGCNQVLWECGPELAAAVIRQGCVQEIAAVVAPKLM 306 Query: 321 GEGGIPSPLEEGYLEKNFM 339 GG+P+ G L + M Sbjct: 307 --GGMPARTPLGDLHFSAM 323 >gi|325568121|ref|ZP_08144562.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus ATCC 12755] gi|325158322|gb|EGC70473.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus ATCC 12755] Length = 358 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 114/352 (32%), Positives = 167/352 (47%), Gaps = 26/352 (7%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82 T TNP V +IVK+ VI +G G PHAE A+E+ + E+ +T YVTLEPC+H Sbjct: 20 TFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSEDLINSTLYVTLEPCNHQ 79 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 G+ PPC Q II+ GI++VV+ DP+ V+G+G ++L +GI ++ + E+E + Y Sbjct: 80 GKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKRFLENQGIDVLVGIEETEVRRLNPHY 139 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + ++ LK A++ D I ITG VH R ILVG TVL Sbjct: 140 NFYHQHQLPYVALKQAITLDGRIAHDAQTRSAITGSAVWQNVHQERGDYQGILVGSQTVL 199 Query: 202 ADDPELTCRLNGLQEHSPMRIILD--------PHFKLSLDSKIIKTALLAPVIIVTENDD 253 DDP L + P+RI++D P L D APV I T+ Sbjct: 200 TDDPTLLTTIET--SFPPIRIVVDRRGRTLSQPQLALFADDS-------APVWIFTQQ-- 248 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A++ ++++I + + LL L R V SL VEGGAA+ +F+ S L I Sbjct: 249 --AAVSDLPAHVSVIQLEELTIAALLKELATRQVQSLYVEGGAAIHDAFLASGLWQESIT 306 Query: 314 YRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 Y + +G + S E + + V G DVC+ C Q+ Sbjct: 307 YVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQD 358 >gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] Length = 385 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 164/319 (51%), Gaps = 6/319 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+R + TS NP V C+++ DG G G G PHAEV+AL AG A G Sbjct: 22 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 81 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC+H GR+ PC + + G+ RVV V+DP SG G + L+ G+ +V Sbjct: 82 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASG-GAERLAAGGVEVVGG 140 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + +LT +R +T K A + D A S IT ++ H LRA Sbjct: 141 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 200 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + V++ Sbjct: 201 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 259 Query: 249 TENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 +P L + + D DL L L RGV S+L+EGGA +A F+ L Sbjct: 260 DRAGEP-RGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGL 318 Query: 308 VDSIILYRSQIVIGEGGIP 326 VD ++ Y + + +G G+P Sbjct: 319 VDRVVAYLAPMFLGGAGLP 337 >gi|312977170|ref|ZP_07788918.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus CTV-05] gi|310895601|gb|EFQ44667.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus CTV-05] Length = 355 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 105/321 (32%), Positives = 165/321 (51%), Gaps = 6/321 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+ + E Sbjct: 7 DNFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLTPE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L + G+ Sbjct: 67 QLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAKLQENGVQ 126 Query: 126 VDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V + ++ L+ + + + IT+K A S DN + M G PIT QVH Sbjct: 127 VTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMRGQ-RTPITNQAVYQQVH 185 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA AI++G T + DDP L R N ++ P+RII+D +L ++ + P Sbjct: 186 SERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDTNP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 I T N + F I II+ ++++ L + + S+ VEGG + + +N Sbjct: 244 TWIFTPNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAIMN 302 Query: 305 SRLVDSIILYRSQIVIGEGGI 325 V+ +I Y + I +G+ G+ Sbjct: 303 EIFVNEVIKYTAPIFLGDEGV 323 >gi|298250252|ref|ZP_06974056.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297548256|gb|EFH82123.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 114/328 (34%), Positives = 160/328 (48%), Gaps = 29/328 (8%) Query: 49 YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 YG PHAEV AL +AGE ARGA YVTLEPC +PPC + I+ GIR V+V DP+ Sbjct: 47 YG--PHAEVHALNDAGELARGADLYVTLEPCCVTIHTPPCTRAILAAGIRHVIVSSLDPN 104 Query: 109 VRVSGRGLQWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 VSG+GL L + G+ V E++ I A RQ +R ++T K A++ D I Sbjct: 105 PLVSGQGLTQLREAGVEVTVGVGAEETDEIIRPFATFIRQ--QRPYVTAKWAMTLDGKIA 162 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHS 218 + I+G ++ VH LR + DAILVG GTV ADDP LT RL + Sbjct: 163 THSSDAYWISGSEARRWVHNLRDRVDAILVGSGTVRADDPMLTVRLTDEERLYARAPRQG 222 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR---- 273 P+R++L L SK+++ L + I+ D PV R + +I Sbjct: 223 PLRVVLASQGALPAQSKLLQPDLASDTCIIVGEDCPVEQQQRLRDTGVEVIQVASNNTSQ 282 Query: 274 -DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 DL L+ L +GV +L+EGG + S + + +D + + + ++G SPL G Sbjct: 283 LDLTSALSALAQKGVMHVLIEGGNSTLGSAFDQQRIDHVAAFIAPKLVGGEAALSPL--G 340 Query: 333 YLEKNFM-------CVRRDYFGSDVCLE 353 FM VR G DV +E Sbjct: 341 GKGLAFMREALQLQQVRIQIIGEDVLIE 368 >gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] Length = 364 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 110/319 (34%), Positives = 164/319 (51%), Gaps = 6/319 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+R + TS NP V C+++ DG G G G PHAEV+AL AG A G Sbjct: 1 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC+H GR+ PC + + G+ RVV V+DP SG G + L+ G+ +V Sbjct: 61 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDPTRDASG-GAERLAAGGVEVVGG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + +LT +R +T K A + D A S IT ++ H LRA Sbjct: 120 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + V++ Sbjct: 180 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 238 Query: 249 TENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 +P L + + D DL L L RGV S+L+EGGA +A F+ L Sbjct: 239 DRAGEP-RGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGL 297 Query: 308 VDSIILYRSQIVIGEGGIP 326 VD ++ Y + + +G G+P Sbjct: 298 VDRVVAYLAPMFLGGAGLP 316 >gi|120434994|ref|YP_860680.1| bifunctional riboflavin biosynthesis protein RibD [Gramella forsetii KT0803] gi|117577144|emb|CAL65613.1| bifunctional riboflavin biosynthesis protein RibD [Gramella forsetii KT0803] Length = 347 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 22/312 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +++ + ++ +G T NP V +IV +IG G G PHAEV A+ +++ Sbjct: 6 KYIKRCIELAQNGLGTTYPNPMVGSVIVYKNKIIGEGWHKKAGEPHAEVNAINSVKDQSL 65 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + A YV+LEPCSH+G++PPC+ II GI++V++ DP +V+GRG++ L G V Sbjct: 66 LKHAIIYVSLEPCSHFGKTPPCSDLIIAKGIKKVIIGTMDPFAKVAGRGIKKLMDAGCEV 125 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQ 182 + ++E E + T Q ++R +I LK A +QD I V IT S Sbjct: 126 NVGILEEECLELNKRFFTFQKKQRPYIILKWAQTQDGFIAPEKKDKKRPVWITNKYSGQL 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----K 238 VH R++ AILVG TV+ D+P L R +P+RII+D + K+S D ++ K Sbjct: 186 VHKWRSEETAILVGTNTVIEDNPSLNVR--KWTGSNPVRIIIDQNLKISKDHSVLDEKQK 243 Query: 239 TALLAPVIIVTENDDPVLALAFR-KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T +L D ++ +NI+ CD +L + S+++EGG+ Sbjct: 244 TVVLCKKKTTGSEDGNIIFEEIEFSENISQEICD---------VLHKYDLQSVIIEGGSN 294 Query: 298 VAHSFINSRLVD 309 FI + L D Sbjct: 295 TLQQFIKAGLWD 306 >gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens T118] gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodoferax ferrireducens T118] Length = 377 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/314 (32%), Positives = 157/314 (50%), Gaps = 22/314 (7%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83 NP V C++ +G+G T G HAE+ AL +A G GATAYVTLEPCSH+G Sbjct: 26 NPRVGCVMTDCRENTLGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSHHG 85 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA--- 140 R+ PC +I GI++VV + DP+ VSG+G + L G+ V+ +M ++ + + + Sbjct: 86 RTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVE-VMPADDPLAIASREL 144 Query: 141 ---YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + +R + K + LK+A S D + S IT ++ H RA++ A+L GI Sbjct: 145 NIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTGI 204 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 GTVL D+P L RL P +I+D + LD+ + + + +N+ A Sbjct: 205 GTVLTDNPRLDVRLVDTPRQ-PHLVIVDSRLETPLDAALFTPGRVIYLYAAVQNEAKKAA 263 Query: 258 LAFRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 L R +IY + DL +L L R + L VE G + SFI LVD Sbjct: 264 LETR--GATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVD 321 Query: 310 SIILYRSQIVIGEG 323 ++Y + ++IG G Sbjct: 322 EYLVYLAPMLIGLG 335 >gi|300727427|ref|ZP_07060836.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14] gi|299775307|gb|EFI71906.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14] Length = 320 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 159/337 (47%), Gaps = 49/337 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D ++M + +R + NPSV +IV D +IG G T+ G PHAEV A Sbjct: 1 MNQKSIDEKYMRRCIAIARNGLNSAKPNPSVGAVIVSADNRIIGEGYTSSYGGPHAEVNA 60 Query: 60 LEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AT YV+LEPCSHYG++PPCA ++ G++R V DP V GRG Sbjct: 61 FASVKPEDEHLLADATLYVSLEPCSHYGKTPPCADLVVRKGVKRCVCGCIDPFSEVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 ++ L GI V ++E E K + T + R +I LK A + + +G G + I Sbjct: 121 IKKLRDAGIDVTVGVLEKECKASNKRFFTFNMLHRPYIILKWAQTINGFMG--GKDRLHI 178 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + ++ VH LRA+ DAIL+G GT+ +D P+L R SP RI+L Sbjct: 179 STPFTQMLVHQLRAECDAILIGRGTLESDHPQLNVR--DWYGPSPERIVL---------- 226 Query: 235 KIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + N D P LAF D+ +LT L SL+V Sbjct: 227 --------------SHNTDGIPEGFLAF------------TDIDSVLTHLYQEKKQSLIV 260 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 EGGA + +FI + L D I + S I E GI SP+ Sbjct: 261 EGGAQILQAFIEAGLWDEIRIETSPFTITE-GIKSPI 296 >gi|326800779|ref|YP_004318598.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21] gi|326551543|gb|ADZ79928.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21] Length = 348 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/322 (31%), Positives = 154/322 (47%), Gaps = 15/322 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE------- 62 +M L + G S NP V L+V +IG G G HAE A+ + Sbjct: 7 YMRRCLELAELGQGSVSPNPIVGALVVHHDTIIGEGWHRKYGEAHAEPNAIADVFNRYPN 66 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + R +T YVTLEPCSH+G++PPCA +I+ +++VVV +DP +V+GRG+ L + Sbjct: 67 AADLLRESTVYVTLEPCSHHGKTPPCADLLIKHQVKQVVVACNDPFEQVNGRGIAKLREA 126 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +++ ++E E K + TR +R ++ LK A + + G ITG ++ Sbjct: 127 GIDVLEGVLEEEAKFVNRRFFTRVQHQRPYVILKWAETANGYFAPKGEKQQWITGSAAQV 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H R++ DA+LVG T L D+P+LT R +P RI++D L + Sbjct: 187 VNHRWRSEEDAVLVGANTALIDNPQLTVR--HWFGRNPKRIVIDKELSLPPHLHLFDKEA 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 V +ND R K I + D + +L L V SL+VEGG + Sbjct: 245 ETIVFNAKKND-----WQDRLKLIALENFDWYLPQNILYQLHLMDVQSLIVEGGIKTLNL 299 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 FI + L D + R Q +G Sbjct: 300 FIKAGLWDEARVLRGQAYWKDG 321 >gi|15827206|ref|NP_301469.1| bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae TN] gi|221229684|ref|YP_002503100.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae Br4923] gi|13092754|emb|CAC30063.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae] gi|219932791|emb|CAR70648.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae Br4923] Length = 339 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 107/327 (32%), Positives = 163/327 (49%), Gaps = 40/327 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S DA M A+ S G T NP V +IV DG V+G G T G HAEV AL Sbjct: 6 VDSLDA-AMRLAVEQSYLVKGATYPNPPVGAVIVDPDGRVVGVGATEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 AG A GA A VTLEPC+HYG++PPC ++E + +V + DP+ G + + Sbjct: 65 SAGVTAAGAIAVVTLEPCNHYGKTPPCVNALLEAKVDKVAYAIADPNASAGGGAARLTAA 124 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 Q G++ D + + +LH +Q H+T K A S D A S ++ Sbjct: 125 GVHVQSGVLADLVTAGPLREWLH----KQRTGLPHVTWKYASSIDGRSAAADGSSRWLSS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NG-LQEHSPMRIILDPHFKLSLDS 234 S+ +H RA +DAI+VG GTVLAD+P LT RL NG L + P+R+++ ++ L++ Sbjct: 181 EASRADLHRRRATADAIVVGTGTVLADNPTLTARLANGALADRQPLRVVVG-MREIPLEA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ +D P + + D ++L L R T +L+EG Sbjct: 240 NVLN------------DDSPTMVI------------RTHDPMEVLKALADR--TDVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A +F+ + ++ I+ Y + I++G Sbjct: 274 GPTLAGAFLRAGTINRILAYVAPILLG 300 >gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans JJ] gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans JJ] Length = 380 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 108/340 (31%), Positives = 177/340 (52%), Gaps = 24/340 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ DA FM+ AL + G NP V ++V+DG ++ G G PHAEV+ L + Sbjct: 1 MAPVDADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVAEGWHKVFGGPHAEVECLHD 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G G T YVTLEPC+H+G++PPC++ +++ GI RVVV DP+ V+G G L Sbjct: 61 AERKGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDPNP-VAGGGAALL 119 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 Q+G+ V ++ES+ + + ++T Q R ++T+K+A++ D I + ++ Sbjct: 120 RQEGVEVTVGVLESQCREAVADFITWQTMGRPYVTVKLAMTLDGRIATRTGDAAWVSCEA 179 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPM-------RIILDPHFK 229 S+ +VH +RA S A+LVG GT+ AD+P L+ RL N H+P R + D + Sbjct: 180 SRERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAHNPQPLGVVVTRRLPDADAQ 239 Query: 230 LSLDSK------IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283 L+L I+ A A + T+ + + + + N + DL L L Sbjct: 240 LALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRAAN---GEGLDLAAGLARLR 296 Query: 284 GRG-VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 V +LL EGG +A S + L D ++++ + V+G+ Sbjct: 297 QEARVFALLCEGGGELAASLLGQGLADELVIFYAPKVLGD 336 >gi|333029739|ref|ZP_08457800.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM 18011] gi|332740336|gb|EGJ70818.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM 18011] Length = 348 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 103/320 (32%), Positives = 163/320 (50%), Gaps = 12/320 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 ++M ++ + + + NP V +IV GI+IG G G HAEV A+ +++ Sbjct: 5 KYMKRCIQLASYGKLHAAPNPLVGAVIVHKGIIIGEGFHIQSGKAHAEVNAINSVKDQSL 64 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +T +V+LEPCSH G++PPC II I VV+ DP +V+GRG+ L ++GI V Sbjct: 65 LPESTIFVSLEPCSHTGKTPPCVDLIINKKIPHVVIGCQDPFSKVAGRGIAKLKEQGIKV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFISKNQV 183 + ++E+E K +H + Q EKR +I LK A S D I + ++ +S Sbjct: 125 EIGILENECKELIHRFYIFQEEKRPYILLKWAESADGYIDQIRSSGTPTLLSSPLSSILT 184 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA+ ++ILVG T L D+P LT R + P+R+I+D + L I + Sbjct: 185 HKRRAEVESILVGRRTALLDNPSLTTR--HWYQKDPIRLIIDRYLSLPNTLHIFDGS--T 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I TE D F+ + + + L ++L + + + S+LVEGGA + SFI Sbjct: 241 PTFIFTEVDK---KSNFKNRTYIQLDFNADILTQILNWMYFQNIQSVLVEGGAQLHQSFI 297 Query: 304 NSRLVDSIILYRSQIVIGEG 323 ++ L D + S I +G Sbjct: 298 DADLWDETHIEESPQSILKG 317 >gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC 19624] gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC 19624] Length = 377 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 107/335 (31%), Positives = 163/335 (48%), Gaps = 28/335 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M AL + + LTS NP V C+IV +G ++G G T G PHAEV AL +A G + Sbjct: 7 MQRALALAEQGLYLTSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHD 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGATAYVTLEPC+H GR+ PC + + GI +VV ++DP+ +V+G+G L G++V Sbjct: 67 VRGATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ + + +R + +KIA S D + S IT ++ H Sbjct: 127 EVGPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHA 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLSLD 233 RA++ AIL G+GTV D+P L RL + E P + +PH D Sbjct: 187 WRARACAILTGMGTVREDNPRLDVRLVETPRQPRLVVVDSRLETPPTAALFEPHR----D 242 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTIL-VGRGVT 288 + + A PV+I D A + + +++ DL LL L R + Sbjct: 243 TAPGREA--QPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREIN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L VE G + S + LVD +++Y + ++G G Sbjct: 301 ELHVEAGHQLNGSLLREGLVDELLIYLAPKLLGAG 335 >gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49] Length = 221 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 88/211 (41%), Positives = 119/211 (56%), Gaps = 4/211 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++A Sbjct: 3 SDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKDA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L Sbjct: 63 RARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V ++ E +++R R + +K A + D + S ITG + Sbjct: 123 DAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + H RA++ AIL GIGTV D+P LT R Sbjct: 183 RLDGHAWRARACAILTGIGTVREDNPLLTVR 213 >gi|257869314|ref|ZP_05648967.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2] gi|257803478|gb|EEV32300.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2] Length = 359 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 110/364 (30%), Positives = 174/364 (47%), Gaps = 35/364 (9%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62 ++ R +S AL+ G T TNP V +IVKD ++ G G PHAE A++ Sbjct: 4 TYMKRAISEALKGK----GQTFTNPLVGAVIVKDEEIVAVGSHMAYGQPHAEKNAIDSCS 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + E+ +T YVTLEPC HYG+ PPC I++ GI++VV+ DP+ VSG+G +L + Sbjct: 60 SPEKLIDSTIYVTLEPCHHYGKQPPCTTAILQSGIKKVVIGQLDPNPLVSGKGKAFLESQ 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++E E + Y T E+R + LK A + D I +AG ITG + Sbjct: 120 GVAVITGVLEKEVREINRHYNTYHEEQRPFVALKQATTLDGKIALAGQ-RARITGEAALR 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R+ AIL+G T L D+P L P +++ LD K L Sbjct: 179 RVRQERSDYQAILIGSRTALIDNPTLRTE------------AAFPTYRVVLDRK--GETL 224 Query: 242 LAPVIIVTENDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + + + PVL +K ++NII L ++ L R + S+ VEGG Sbjct: 225 KQQLTLFEDTSSPVLVFTTKKVQSVFSNHVNIITTPSLTLSFVMKELYRRKIQSVYVEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +++ +F+ D +I Y S +IG G S + + F ++V +E + Sbjct: 285 SSIHDAFLADGYWDQVITYLSPKLIGGNGTASFASSREVNQMFAL-------TEVTVEPV 337 Query: 356 GKNL 359 G+ L Sbjct: 338 GEEL 341 >gi|163755421|ref|ZP_02162541.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1] gi|161324841|gb|EDP96170.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1] Length = 340 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/313 (30%), Positives = 160/313 (51%), Gaps = 34/313 (10%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRS 85 NPSV +IV + ++IG G T+ G HAEV A+ +++ + AT YV+LEPCSH+G++ Sbjct: 18 NPSVGAIIVHNDMIIGEGYTSAYGGNHAEVNAVHSVKDKSLLKEATMYVSLEPCSHFGKT 77 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG------IIVDRMMESEGKIFLH 139 PPC+ II+ I +VV+ DP +V+G+G++ L G ++ D + S + F Sbjct: 78 PPCSDLIIKHQIPKVVIGTIDPFAKVAGKGIEKLQNAGCEVILNVLKDECIASNKRFF-- 135 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITGFISKNQVHLLRAQSDAIL 194 T KR ++ LK A +QD I + P IT S+ VH R++ AIL Sbjct: 136 ---TFHQHKRPYVILKWAETQDGFIDKIRQENDPVQPNWITNKFSRQLVHKWRSEETAIL 192 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL----SLDSKIIKTALLAPVIIVTE 250 VG T + D+P+L R +P+RI+LD ++ SL + IKT +L V + Sbjct: 193 VGTNTAITDNPKLNTR--DWHGKNPVRIVLDRSLRIPENYSLFDQTIKTIVLTEVEKAST 250 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + + F +N+ C+ +L + S+++EGG +F+++ L D Sbjct: 251 ENLIFETIDF-SENLAQQICN---------VLFQHELQSVIIEGGKQTLQTFMDANLWDE 300 Query: 311 IILYRSQIVIGEG 323 +++ I+ +G Sbjct: 301 ARVFKGNILFQQG 313 >gi|330718204|ref|ZP_08312804.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc fallax KCTC 3537] Length = 346 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 155/307 (50%), Gaps = 14/307 (4%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSH 81 LT NP V +IVKD +V+ G G HAE+ + + A+ AT YVTLEPCS Sbjct: 21 LTFENPRVGAVIVKDNVVLATGYHHQFGQEHAEMNTFHQLKDPAQVIDATMYVTLEPCST 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 +G+ CAQ + + G+RRVV+ DP+ +G G+ L Q GI VD ++ +E L+ Sbjct: 81 HGKVGSCAQSMAKWGLRRVVIGSIDPNPSTNGHGVAILKQAGIQVD-VLNTEHSRRLNPE 139 Query: 142 LTRQVEKR-SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 E R ++ LK+A S++ ++ + +T + VH RA AIL+G T Sbjct: 140 FHYYFEHRLPYVQLKLATSKNGIVSDNAKTRIKLTNHKADIDVHQERASKSAILIGSQTF 199 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L D P LT R L P+RI+LD +L + IK +I TEN A+ Sbjct: 200 LTDWPSLTVRYLALHHPQPLRIVLDRRGRL----QNIKFDFSNRWLIYTENHAFAEKHAY 255 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K++ N + DL + + + S++VEGG ++ SFI L + ++YR+ ++ Sbjct: 256 VKESHNGLIGVLNDLAQ------QQQIQSIMVEGGPSLIQSFIAQDLWNEYLIYRTDKLL 309 Query: 321 GEGGIPS 327 + G+ S Sbjct: 310 LDSGLAS 316 >gi|302541057|ref|ZP_07293399.1| riboflavin biosynthesis protein RibD [Streptomyces hygroscopicus ATCC 53653] gi|302458675|gb|EFL21768.1| riboflavin biosynthesis protein RibD [Streptomyces himastatinicus ATCC 53653] Length = 362 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 113/340 (33%), Positives = 169/340 (49%), Gaps = 12/340 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I+ +G G G G PHAEV AL AGE ARG Sbjct: 1 MRRAVALAARGLGHTSPNPVVGCVILDAEGQPAGEGWHQRAGGPHAEVHALRAAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H GR+ PCA+ +++ GI RV V DP + G + + Sbjct: 61 GTALVTLEPCNHTGRTGPCARALLDAGIARVRYAVADPTGQARGGAATLAAAGVDVAAGP 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + A+LT R + K A + D A S IT ++ VH LRA+ Sbjct: 121 LTDEAEAVNEAWLTAMRRGRPFVLWKYAATLDGRSAAADGTSRWITSAAARADVHRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVII 247 +DA++VG GT+ ADDP L R +G+ + P+R+ +D L D++I+ A AP ++ Sbjct: 181 ADAVVVGSGTLRADDPHLAVRDRDGVTQ--PLRVAVDTDATALKPDARILDDA--APTLV 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D L + D+ LL L RGV S+L+EGG +A +F+ Sbjct: 237 AVAEDADTGHLPAGTDTARLPRARAGRGLDIAALLAALHDRGVRSVLLEGGPTLAGAFLA 296 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 + VD ++ Y + +++G G P+ L + + +R D Sbjct: 297 AGAVDKVVGYLAPVLLGAG--PAALADAGITTIAQALRMD 334 >gi|256545035|ref|ZP_05472403.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC 51170] gi|256399331|gb|EEU12940.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC 51170] Length = 359 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 155/325 (47%), Gaps = 25/325 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T TNP V ++VKD +I G G HAEV + Sbjct: 3 DKEYMRKCFELAKKARGKTLTNPLVGAVLVKDNKIISTGFHHEYGKTHAEVDCFNNLKSD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA YV LEPCSH+G+ PC II+ I++V++ D + +V GL+ L I + Sbjct: 63 CDGAILYVNLEPCSHWGKQGPCTLEIIKRNIKKVIISNIDTNPKVD--GLKVLKDNNIEV 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 VTGLLEDEGKKLNEKFFFNVKYNRPLIALKFAQTLDGKISSNINDSKWISNESSRAYVHE 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLD---SKIIKTAL 241 LR+ DAI+VG T++ D+P L R+ NG+ P+RII+D + ++ D KI Sbjct: 181 LRSDYDAIIVGKNTLIKDNPSLNSRIENGVD---PVRIIVDTNLEIEKDYMSYKIFNLKS 237 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 I T + ++P N+NII C + DL L L + S+LVEGG Sbjct: 238 DKKTYIATCKDTNNP---------NLNIIKCKMKNNHVDLNDLANKLYKMKIGSILVEGG 288 Query: 296 AAVAHSFINSRLVDSIILYRSQIVI 320 +++ + F+ LVD I + S +I Sbjct: 289 SSLNYGFLQEGLVDKIYEFISPKII 313 >gi|227549213|ref|ZP_03979262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227078667|gb|EEI16630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 324 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 106/304 (34%), Positives = 147/304 (48%), Gaps = 36/304 (11%) Query: 23 GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C L +G +I G T+ G HAE+ AL AG ARGATA VTLEPC+H Sbjct: 18 GATSPNPPVGCALFSPEGELIATGGTSPAGGAHAEINALRAAGSRARGATAVVTLEPCNH 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 GR+ PCA+ + + I R+V DP+ + +G G +L++ G+ V + E L + Sbjct: 78 TGRTGPCAKALADAQIARLVYLTTDPNPQAAG-GADYLARHGVEV--VFEPRRVDALVPW 134 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 LT R +TLK A S D S ITG ++ VH RA DAI++G GT + Sbjct: 135 LTSIERGRPSVTLKYAASLDGFTAAPDGTSKWITGPAARRHVHADRAVRDAIIIGTGTAI 194 Query: 202 ADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 AD+P LT R + L P R+++ V E + + L Sbjct: 195 ADNPSLTARYDDGSLMATQPRRVVVG-------------------TRAVPEGN--LTRLG 233 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 F + Y D L L G +LVEGGA +A SF+ LVD + Y + ++ Sbjct: 234 FEQ------YATPDD---ALEALWESGARDVLVEGGAGLAASFLEQGLVDRVQAYAAPLL 284 Query: 320 IGEG 323 +G G Sbjct: 285 LGAG 288 >gi|229495189|ref|ZP_04388924.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis ATCC 35406] gi|229317632|gb|EEN83530.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis ATCC 35406] Length = 342 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/344 (33%), Positives = 171/344 (49%), Gaps = 24/344 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M L + G TS NP V ++V ++G G G PHAEV Sbjct: 1 MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS 60 Query: 63 AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E +T YV+LEPCSHYG++PPCA+ +++ + RVVV + DP V+GRG+ Sbjct: 61 VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL 120 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGM----AGCGSVP 173 L KG+ V+ + E +L+ + VEK R +TLK A S+D I A Sbjct: 121 LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV 180 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 + I + VH LR DAILVG T+ D+P LT R SP ++LD L Sbjct: 181 FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRF--WWGTSPQPVVLDSEGVLCHQ 238 Query: 234 S-KIIKTALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVT 288 + K+ + + P IV+ + AFR + + N I + + + LL L R + Sbjct: 239 AYKVNQNSTSKPWFIVSPS-------AFRSQPLPENCIAIERSEHFIASLLETLASRKIQ 291 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 SLLVEGGA +F++S L D++ S ++ E G+ +P+ G Sbjct: 292 SLLVEGGAQTLQAFLDSGLYDAVDREVSPRLLYE-GVAAPIFSG 334 >gi|297182203|gb|ADI18374.1| pyrimidine deaminase [uncultured actinobacterium HF4000_04C13] Length = 338 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 126/342 (36%), Positives = 164/342 (47%), Gaps = 40/342 (11%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 TS NP V ++V DG ++G G T G HAE AL EAG A GAT Y TLEPC H GR Sbjct: 27 TSPNPRVGAVVVVDGRMVGSGATQPPGGAHAERVALAEAGPAAAGATLYTTLEPCDHEGR 86 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLT 143 + PC II G+ RVVV + DPD VSGRG+ L + G+ VD ++E E L YL Sbjct: 87 TAPCTDAIIGAGVARVVVGIGDPDPEVSGRGIGRLREAGLDVDVGVLEDEVSDTLAPYLH 146 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 + R ++ LK+A + D I S ITG ++ VH LRA DAI VG GT+ AD Sbjct: 147 HRRTGRPYVVLKLAATLDGRIAAPDGTSRWITGSEARLDVHRLRASCDAICVGAGTIRAD 206 Query: 204 DPELTCR-LNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 DP L R +G E P R++L +I A + P A + Sbjct: 207 DPRLDVRDADGEVEGGDPPRRVVL---------GEIPAGARVLP------------ADEY 245 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ D GV LLVEGGA VA F + LVD ++Y + ++ Sbjct: 246 HGGLEGLLDGLGAD-----------GVLKLLVEGGADVAGRFHRAGLVDRYVVYLAPALL 294 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 G G PL G +RR F V +E +G +L L Sbjct: 295 G-GEDGRPLMAGPGAPTMADLRRGRF---VAVEVLGDDLRLD 332 >gi|239978360|ref|ZP_04700884.1| putative riboflavin/cytosine deaminase [Streptomyces albus J1074] gi|291450256|ref|ZP_06589646.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074] gi|291353205|gb|EFE80107.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074] Length = 378 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 165/325 (50%), Gaps = 16/325 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + +G TS NP V C+++ G G G G PHAE+ AL EAG+ ARG Sbjct: 14 MRRALELAARGLGTTSPNPVVGCVVLDAHGEQAGEGWHRRAGGPHAEIHALREAGDRARG 73 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA VTLEPC+H GR+ PCAQ +++ GI RVV V DPD G G L G + Sbjct: 74 GTALVTLEPCNHTGRTGPCAQALLDAGISRVVYAVADPDPLAEG-GAATLRAAGAETSQG 132 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ +E + A+LT R H+T K A + D A S IT ++ VH LRA Sbjct: 133 LLAAEAEQVNAAWLTSVRRGRPHVTWKYAATLDGRTAAADSTSRWITSAEARADVHRLRA 192 Query: 189 QSDAILVGIGTVLADDPEL-----TCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTALL 242 ++DA+LVG GT ADDP L + P+RI+LD + ++++ A Sbjct: 193 EADAVLVGAGTARADDPHLAARLPAPAPDAPAPVQPLRIVLDSDATAVRPGARVLDDA-- 250 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 AP ++ D L ++ ++ + L LL L R V S+L+EGGA + Sbjct: 251 APTLVAVAGDADARHLEG-HPHVELLRLPRTNGGLDLTALLAALHARSVRSVLLEGGARL 309 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 A +F+ + VD ++ Y + ++G G Sbjct: 310 AGAFVAAGAVDRVVGYLAPALLGAG 334 >gi|187735315|ref|YP_001877427.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC BAA-835] gi|187425367|gb|ACD04646.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC BAA-835] Length = 356 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 114/364 (31%), Positives = 176/364 (48%), Gaps = 44/364 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ + +GLTS NP V +IV + VIG G G PHAE +A+ + Sbjct: 12 DDCWMNMAIKLASNGIGLTSPNPCVGAVIVHENQVIGSGFHKKAGLPHAEREAIADGVAN 71 Query: 67 ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +T YVTLEPCS G++PPC I++ +RVV +DP+ + G L Q Sbjct: 72 GNAPLFADSTLYVTLEPCSTSGKTPPCTDAILKYRFKRVVYGSEDPNPKHRGAAADILEQ 131 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V R ++E E + + +E R + K A+S D I + S +T S+ Sbjct: 132 AGIKVTRGVLEKECDRLIRRFRVNMLEGRPWVIAKSAMSLDGRISRSPERSQWLTNEKSR 191 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LRA+ DA+L G TV D+P LT R ++ L+E P RII L+ D+ Sbjct: 192 SFVHTLRAECDAVLTGGNTVRLDNPSLTIRKPDRPVSPLKEQ-PWRII------LTHDAS 244 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVE 293 I D L FR + + + ++ LKKL + + ++L+E Sbjct: 245 SIPA------------DSICLTDEFRDRTLVVENVFSYLELLKKLYN---DKKIGTILLE 289 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPL--EEGYLEKNFMCVRRDYFGS 348 G + F+ + LVD + + + I+IG +G P P E +LE+ + + FG Sbjct: 290 AGGCLVREFLKAGLVDEWVGFYAPIIIGGGADGVAPGPFLEHEAHLEQPVVNI----FGG 345 Query: 349 DVCL 352 DVC+ Sbjct: 346 DVCI 349 >gi|282859870|ref|ZP_06268958.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010] gi|282587273|gb|EFB92490.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010] Length = 314 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/354 (30%), Positives = 169/354 (47%), Gaps = 54/354 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ + L NP V +IV +G +IG G G HAEV A Sbjct: 1 MERQDIDEMYMRRCLQLATNGKLLAKPNPMVGAVIVSNEGRIIGEGYHVRCGEEHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E +T YV+LEPCSH+G++PPCA II+ G++RVV DP +V GRG Sbjct: 61 FASVRKEDESLLSDSTIYVSLEPCSHFGKTPPCANLIIKKGVKRVVCGCVDPFSKVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 +Q + + GI V ++E+E + + ++T ++R +I LK A +++ +G+ G G + I Sbjct: 121 IQRIREAGIEVTVGVLEAECLVLNNRFITFNTQERPYIILKWAQTENGFMGVKG-GVLKI 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +K VH LR++ DAILVG T + P+L R +P +++L S Sbjct: 180 STPFTKMLVHKLRSECDAILVGRNTEEQESPQLNVR--DWSGRNPQKVVL---------S 228 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + TA+ D+ LL L +L+VEG Sbjct: 229 STLPTAI-------------------------------HDIPSLLQQLYHDKCQTLIVEG 257 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348 GA +FI S + D I + S + E GI +P L K+ +R++YFG+ Sbjct: 258 GATTLETFIRSGMYDEIRVEVSPTTVRE-GIKAP----QLPKDVSVIRKEYFGN 306 >gi|114777001|ref|ZP_01452021.1| RibD [Mariprofundus ferrooxydans PV-1] gi|114552522|gb|EAU54982.1| RibD [Mariprofundus ferrooxydans PV-1] Length = 379 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 106/320 (33%), Positives = 155/320 (48%), Gaps = 20/320 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ ++ G T NP V ++V G V+G G G PHAE AL+ AG+ ARG Sbjct: 28 LMLQAIELAQRGGGTTHPNPRVGAVVVNRGEVVGVGWHKRAGGPHAEAVALQVAGKRARG 87 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI----- 124 T YVTLEPCS +GR+P C + I GI+ VV DP+ ++SG G + L GI Sbjct: 88 GTLYVTLEPCSAHGRTPACTEAIRRAGIKHVVYASPDPNPQMSG-GHKILEAAGISVTAG 146 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ E+ F H T R ++ K A+S D + S I+G S+ Sbjct: 147 VLREQAEALNIPFFHYLRT----GRPYVIAKAAISLDGKMATRTHHSQWISGEASRLHAQ 202 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL---DPHFKLSLDSKIIKTAL 241 LRA SDAI+VG GT+ D+P LT R P+R+++ P F D K++ Sbjct: 203 GLRAASDAIIVGAGTLKHDNPSLTVRGVPAVGDVPLRVVMCFETPKF--FADCKLLSAEA 260 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + N +R+ I + L +L L G LL+EGG + S Sbjct: 261 PTRFYVRSINTH---TEQWREAGIEV--EQVTSLAGVLKHLAEDGRLMLLLEGGGELHAS 315 Query: 302 FINSRLVDSIILYRSQIVIG 321 F+ +R D ++LY++ I+IG Sbjct: 316 FLEARFTDELVLYQAPILIG 335 >gi|312887826|ref|ZP_07747413.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM 18603] gi|311299645|gb|EFQ76727.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/350 (31%), Positives = 169/350 (48%), Gaps = 26/350 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA-------LEEA 63 M L ++ +G S NP V +IV G +IG G G HAEV A ++A Sbjct: 1 MLRCLELAKLGLGSVSPNPMVGAVIVHQGRIIGEGYHQRYGEAHAEVNAVNNVINRFDDA 60 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + + YV+LEPC+HYG++PPCA II+ I VVV DP +V+G+G++ L G Sbjct: 61 AQLLSESVIYVSLEPCAHYGKTPPCADLIIKHQIPEVVVGCRDPFDQVNGKGIEKLQAAG 120 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++E E + TR ++ R +I LK A ++D A + ITG S+ Sbjct: 121 VKVTVGVLEKECLDLNKRFFTRILKHRPYIILKWAQTEDCFFAPADQSQLWITGEESRKL 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R + DAILVG T D+P+L R + SP RI++D +LS + + + Sbjct: 181 VHQWRGEEDAILVGKNTAAIDNPQLNVRYGPGK--SPKRIVIDRRLELSKELYLFDQTVE 238 Query: 243 APVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + TE D V ++ N + + +L L + + S+++EGGA Sbjct: 239 TFVFNEVKTEFDGKVKYISLEDFNYYV-------PQYILYQLYLQDIQSVIIEGGATTLA 291 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 FI L D ++ I + + GI +P +G + V D G+DV Sbjct: 292 HFIKDGLWDEARIFTGAITL-KKGIQAPQIKGDV------VSEDRVGNDV 334 >gi|148909999|gb|ABR18084.1| unknown [Picea sitchensis] Length = 457 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 98/301 (32%), Positives = 161/301 (53%), Gaps = 22/301 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA++M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL EAG + Sbjct: 91 DAQYMRMCISLAKKALGCTSPNPMVGCVIVKDGHIVGQGFHPKAGEPHAEVFALREAGTK 150 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYV+LEPC+HYGR+PPC Q +I+ + RVVV + DP+ V+ +G+ L GI V Sbjct: 151 AEGATAYVSLEPCNHYGRTPPCTQALIQARVGRVVVGMVDPNPIVASKGVATLRNSGIDV 210 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVH 184 +E + + AY+ R + + IT++ ++S D M+ G G+ G+ SK Sbjct: 211 TVGVEEKLCQTMNEAYIHRILTGKPFITMRFSMSLDGGMLDDLGDGAAEEGGYYSK---- 266 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 + Q D ++V T L D+ L G ++ P+RI++ L +DS I T L Sbjct: 267 -MLQQYDGVIVSDQT-LYDNLNLLSSEAGAKQ--PLRIVVTRTLVLPIDSLIFNTDLAPT 322 Query: 245 VIIVTEN------------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 +++ E + + + R++ + ++ ++ +L I RG+ S+ + Sbjct: 323 LVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRGLCSVFI 382 Query: 293 E 293 + Sbjct: 383 D 383 >gi|332291081|ref|YP_004429690.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus 4H-3-7-5] gi|332169167|gb|AEE18422.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus 4H-3-7-5] Length = 333 Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 95/315 (30%), Positives = 154/315 (48%), Gaps = 34/315 (10%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ----ALEEAGEEARGATAYVTLEPCSHYG 83 NPSV ++V + +I G T+ G PHAEV A E +T YV+LEPCSH+G Sbjct: 25 NPSVGAVLVHNNKIIAEGYTSDYGGPHAEVNCIAFAKANTPELIAKSTLYVSLEPCSHWG 84 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 ++PPCA ++ GI++VV+ DP +V+G G++ L Q G+ V + E E + + Sbjct: 85 KTPPCADLVVASGIKKVVIGTIDPFAKVAGAGIKRLIQAGVDVTVGVQEKECQEINKRFF 144 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMA---GCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 T +KR ++ LK A + D I V IT S+ VH R++ AILVG T Sbjct: 145 TYHEKKRPYVILKWAETADGFIAPKTRDAQQPVWITNPYSRQLVHKWRSEEMAILVGGKT 204 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 VL D+P LT R + +P+R+++D K +LD+ + A +++ D +++ Sbjct: 205 VLEDNPSLTTR--DWEGKNPIRVVIDT--KGNLDNNLTVFNQEAETLVIASTDSQLIS-- 258 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 L +G+ S+++EGGA FI++ L D +++ Sbjct: 259 --------------------ETLYDKGIQSVIIEGGAQTLQHFIDANLWDEARIFKGNTS 298 Query: 320 IGEGGIPSPLEEGYL 334 +G L + +L Sbjct: 299 FSKGTKAPQLSQHFL 313 >gi|256819357|ref|YP_003140636.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM 7271] gi|256580940|gb|ACU92075.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM 7271] Length = 331 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 161/333 (48%), Gaps = 29/333 (8%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M ++ + +G T NP V +IV +G +IG G G HAEV+A+ Sbjct: 7 TIDEWYMRRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVRAITSVK 66 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G++ L Sbjct: 67 DKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGIEKLRNA 126 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFI 178 G ++ + E+E + + T + R +I LK A ++D I V I+ Sbjct: 127 GCEVIVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPHWISDVY 186 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP Sbjct: 187 ARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDP------------ 232 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDC-------RDLKKLLTILVGRGVTSL 290 L +P ND + ++ +I+ D + L+++ L + S+ Sbjct: 233 -KLRSPKEFAVWNDRTTTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSM 291 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +VEGGA FI+ L D +++ I GEG Sbjct: 292 IVEGGAYTLQQFIDEGLWDEAVVFTGDICFGEG 324 >gi|295395079|ref|ZP_06805288.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] gi|294972027|gb|EFG47893.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] Length = 336 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 113/348 (32%), Positives = 157/348 (45%), Gaps = 47/348 (13%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-GATAYVTLEPCSH 81 G+ NP V ++ D G G PHAE A+ A + GAT VTLEPCSH Sbjct: 18 GVRGANPLVGAAVLWDDGTFTTGYHQGAGTPHAEPDAIRNASPRSTTGATLVVTLEPCSH 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140 GR+ PC Q II+ GI RVV+ DP+ + SG G Q L++ G+ V + G+ + H Sbjct: 78 TGRTGPCTQAIIDAGITRVVIASRDPNPQASG-GAQTLTEAGVEV-LFLNDLGQSWAHEV 135 Query: 141 ----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + T R IT KIA S D + S ITG S+ HL RA+ Sbjct: 136 ATQAHRLNARWFTAVTHDRPFITAKIAQSLDGCVAARDRTSQWITGAESRAHAHLTRARV 195 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DAI VG GT AD+P LT R G H P+ ++ TAL Sbjct: 196 DAIAVGTGTAHADNPRLTAR-TGDSPHQPIPVVFG------------TTALPG------- 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 D L R + + RDL++ RGV+ LL+EGG + F+ LVD Sbjct: 236 --DSHLGRNPRTLTYSEVGAGLRDLRR-------RGVSHLLLEGGPTLMAHFLQHDLVDE 286 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYI 355 + +Y + +++G+ GI +PL L + V + GSD ++ Sbjct: 287 LHVYTAPLLLGD-GIRAPLSVDTLAQGLRFVPDAPPEALGSDTFTRFM 333 >gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 129/243 (53%), Gaps = 4/243 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G NP V +++ G +G G G PHAEV AL+ AG ARG Sbjct: 1 MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 T VTLEPC H+G++PPC ++ G+ RVV + DP RV+G GL L G+ V Sbjct: 61 GTLLVTLEPCCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGVDVQVG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E++ + YL R + K A++ D + S I+G S+ +VH LR Sbjct: 121 LCEADARALNAPYLKLLSTGRPWVHAKWAMTLDGKLAARTGDSKWISGAESRRRVHELRG 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GTV+ADDP LT R G++ P R++L +L ++ TA APV++ Sbjct: 181 RLDAILVGRGTVVADDPLLTARPAGVR--VPARVVLTASGELPAACQLRATAREAPVLVY 238 Query: 249 TEN 251 T N Sbjct: 239 TAN 241 >gi|6572094|emb|CAB63087.1| riboflavin-specific deaminase [Bartonella clarridgeiae] Length = 227 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 83/226 (36%), Positives = 131/226 (57%), Gaps = 17/226 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R +TLK+A+S DN +G G ++ I+G IS +Q H+LRAQ+D I+VGIGT+LADDP+L Sbjct: 6 QRCEVTLKMAISADNGVGKKGQSNLKISGEISHSQTHILRAQNDVIMVGIGTILADDPKL 65 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-- 265 CRL GL+ SP+R+ILD + ++ LD+K+++TA P ++ L+ ++K I Sbjct: 66 DCRLPGLEMRSPIRVILDKNLRIPLDAKVVQTAANIPTWVICGT-----VLSKKRKKIAL 120 Query: 266 ---NIIYCDCRDLKKL------LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + C L L +L R + S+L+EGGA F+N+ VD +I + + Sbjct: 121 EQYGVTVCSVEVTNNLIPPLAILRLLYQRKINSVLLEGGAKTGEIFLNASCVDRLICFYA 180 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 I++G+ I +P E YL + F + G+D ++ K LC Q Sbjct: 181 PIILGKDRIEAPHFESYLSE-FNKIEMRMLGNDRLYKWRRKILCSQ 225 >gi|257483265|ref|ZP_05637306.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 167 Score = 143 bits (361), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 74/159 (46%), Positives = 100/159 (62%), Gaps = 1/159 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +A Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L G Sbjct: 66 GELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAG 125 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 I V ++ESE + +L R + +I +K+A+S D Sbjct: 126 IGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLD 164 >gi|170017119|ref|YP_001728038.1| riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20] gi|169803976|gb|ACA82594.1| Riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20] Length = 347 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 104/346 (30%), Positives = 168/346 (48%), Gaps = 27/346 (7%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 T NP V +IVK+G ++ G G HAE+ A E ++ +T YVTLEPC Sbjct: 22 TYENPRVGAIIVKNGQILATGYHHSFGAAHAEINAFENLRDQTDIVDSTMYVTLEPCFVT 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF---LH 139 G+ CA I + G++RVVV DP+ GR + +L Q GI VD + + +I + Sbjct: 82 GKVGACALAIAQWGVKRVVVGSFDPNPDTHGRSVTFLRQAGIRVDVLGTEDSQILNPGFY 141 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 Y R + ++ LK+A S ++ + + S IT ++ VH RA AIL+G T Sbjct: 142 HYFERHL---PYVQLKLAESANHFVASSQGQSTKITDRLADIDVHKERASKSAILIGSET 198 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 +L D P LT R + P+R+++D +L +K+ + +I T N D Sbjct: 199 MLIDQPNLTVRHVPINHPQPLRVVIDRRGRLQ--NKMDRAT--NNWLIFTTNTD------ 248 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 F K+ N++ L +LT L + + S++VEGG ++ +F+ + L I+Y + + Sbjct: 249 FAKQYDNVLLM-SHGLLSVLTSLASKNIQSVMVEGGPSLITAFLKANLWQEFIVYTADSI 307 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN--LCLQE 363 + E G+PS ++ F V G+ + Y+ CLQE Sbjct: 308 LSEDGVPS------VQPLFNSVSSYRVGNTLKSRYLNDRSVSCLQE 347 >gi|323436092|ref|ZP_08088234.1| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134] gi|321496407|gb|EAQ38739.2| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134] Length = 346 Score = 143 bits (360), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 35/309 (11%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ----ALEEAGEEARGATAYVTLEPCSHYG 83 NPSV ++V + +I G T+ G PHAEV A E +T YV+LEPCSH+G Sbjct: 38 NPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAKANTPELIAKSTLYVSLEPCSHWG 97 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 ++PPCA +I+ GI+RVV+ DP +V+G G++ L Q G+ V ++E E + + Sbjct: 98 KTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLMQAGVDVTVGVLEKECQEVNKRFF 157 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILVGIGT 199 T EKR I LK A + + I A V IT S+ VH LR++ ILVG T Sbjct: 158 TYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITNSHSRQLVHKLRSKEMGILVGGKT 217 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 V+ D+P LT R +P RI++D L I AP I++ ++D + Sbjct: 218 VIEDNPTLTTR--DWHGSNPTRIVIDTQGNLPKKLHIFNNE--APTIVLKDSDPKSI--- 270 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 C++ L + S++VEGGAA FI++ L D ++ + + Sbjct: 271 ------------CKE-------LFEHNIQSVIVEGGAATLQRFIDAALWDEASVF-TGLT 310 Query: 320 IGEGGIPSP 328 GI +P Sbjct: 311 NFNAGIKAP 319 >gi|325103646|ref|YP_004273300.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145] gi|324972494|gb|ADY51478.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145] Length = 347 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 40/361 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ FM A+ + G S NP V ++ DG +IG G G HAEV A++ + Sbjct: 4 DSIFMQRAIDLALLGAGSVSPNPMVGAVVAHDGQIIGEGYHKKYGESHAEVNAIQNVIDN 63 Query: 67 ARGA-------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + A T YVTLEPC+HYG++PPCA II+ I R+V+ DP V+G+G++ L Sbjct: 64 FKNADHLLKQSTIYVTLEPCAHYGKTPPCADLIIKHCIPRIVIGCRDPFDSVNGKGIEKL 123 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G ++ ++E+E + T+ ++R ++ LK A + + ITG Sbjct: 124 LIAGKEVITGVLETECLELNRRFFTQIQKQRPYVILKWAQTANGFFAPENHQQRWITGKE 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD------PHFKLSL 232 SK VH RA+ D ILVG T + D+P+L RL ++ +P R ++D PH L L Sbjct: 184 SKILVHQWRAEEDCILVGKNTAIIDNPQLNVRL--VKGKNPKRAVIDKNLALPPHLNL-L 240 Query: 233 DSK---IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 D+K I A+ + ++ + K I+I D + +L L + V S Sbjct: 241 DNKQETFIFNAIESKIV-------------GKNKYISIEDFDHFLPQYILYQLYLQDVQS 287 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 ++VEGG SFI L D ++ S+ E GI +P +G + D GSD Sbjct: 288 VIVEGGVTTLQSFIKHNLWDEARIFYSEDY-WENGINAPTIKG------NQISTDKVGSD 340 Query: 350 V 350 Sbjct: 341 T 341 >gi|160872316|ref|ZP_02062448.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli] gi|159121115|gb|EDP46453.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli] Length = 360 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 161/359 (44%), Gaps = 23/359 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-EA 67 +++ AL + G S NP V ++VKD VI +G G PHAEV+A++ Sbjct: 7 QYLELALSLAEIRRGFCSPNPCVGAILVKDNTVIAKGYHHASGLPHAEVEAIQSVNPVHV 66 Query: 68 RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GAT YVTL+PC H ++PPC II+ GI +V+ DP+ VS L GI Sbjct: 67 KGATLYVTLQPCCHSAKKTPPCTDLIIKSGIVKVIYGFQDPNPAVSHHTDNLLKHAGIEC 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + F +Y+ KR T K+A+S D I V +TG ++ H Sbjct: 127 IQHALPAIDNFYASYVYWWTCKRPFTTAKLALSLDGKIAGKNGKRVQLTGEKAQQFTHHH 186 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++DAIL T+ DDP L RL+ P+ ILD H LS SKI ++A + Sbjct: 187 RKKADAILTTAKTISHDDPLLNSRLDHKIYKKPL-YILDTHLNLSTTSKIFESAA---SV 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-----VG-RGVTSLLVEGGAAVAH 300 + + F+++ + + + K L ++ +G G L VE G + Sbjct: 243 TIFHHSSVCKVYQFKEQQPDTRFIPIKHDKNGLNLIAVFDHIGLDGKIDLWVEAGGHLFQ 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + I + L+ +Y + +GE P+PL++G K G D C E+ Sbjct: 303 ALIQNNLLQHAFIYVAPRWLGENAQTAFHFPNPLKKGIPMKGIT------LGRDTCFEF 355 >gi|33866124|ref|NP_897683.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. WH 8102] gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. WH 8102] Length = 354 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 106/311 (34%), Positives = 162/311 (52%), Gaps = 8/311 (2%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +++ ++G ++G G A G PHAEV AL +AG A G T VTLEPC H Sbjct: 18 GRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAAGGTLIVTLEPCCH 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHA 140 +GR+PPC++ +++ G+ RVVV ++DPD RV+G G+ L + G++V ++ E A Sbjct: 78 HGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAGVVVITGVLRQEAAEQNRA 137 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R R LK A+ D + S I+G S+ VH LRA DA++VG GTV Sbjct: 138 FLHRVRTGRPWGVLKWAMGLDGRTALPNGTSQWISGADSRRWVHQLRAGCDAVIVGGGTV 197 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 ADDP LT R G ++ P+R++L L ++++ TA A ++ P A Sbjct: 198 RADDPLLTSR--GRRDPEPLRVVLSRGLDLPAEAQLWDTASAATLVA----HGPEAAGKQ 251 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + + L+ L RG +L E G+ +A + I V + + ++ Sbjct: 252 APNGPERLELEQCEPLPLMQHLAARGCNQVLWECGSELAAAAIRQGCVQEVAAVLAPKLM 311 Query: 321 GEGGIPSPLEE 331 G +PL E Sbjct: 312 GGVAARTPLGE 322 >gi|256421260|ref|YP_003121913.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM 2588] gi|256036168|gb|ACU59712.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM 2588] Length = 352 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 106/352 (30%), Positives = 168/352 (47%), Gaps = 27/352 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SSFD +M L+ ++ G + NP V ++V +G +IG G G HAEV + Sbjct: 3 SSFDEFYMQRCLQLAKLGAGNVAPNPMVGAVLVYEGRIIGEGYHRQYGFAHAEVNCVHSV 62 Query: 64 GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E + AT YV+LEPC+HYG++PPCA+ I+ I VV+ D +V+G+G+ L Sbjct: 63 KPEDQHLIPAATMYVSLEPCAHYGKTPPCAELIVSQQISTVVIGCVDTFSQVAGKGIGIL 122 Query: 120 SQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V ++E+ + + T +KR +I LK A + D + A V I+ + Sbjct: 123 KAAGITVRTGVLEAAARELNSRFFTFHEQKRPYIILKWAQNADGFMAGADGRPVRISNPL 182 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH R++ ILVG T +AD+P L RL P+RI++D K + + Sbjct: 183 TDRLVHRWRSEEMGILVGTNTAVADNPRLNNRL--WTGKDPVRIVIDRTLKTPREYHLWH 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296 A + I E A ++ ++ D L +L+ IL R + S+LVEGGA Sbjct: 241 GP--ATLFITAEQ-------AEKQDTAEMVTADFSQPLLPQLMKILHDRRILSVLVEGGA 291 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRD 344 V + L D ++++IG+ G+ +P+ L K + D Sbjct: 292 HVLREMTEAGLWDE-----ARVIIGDNPFALGVKAPVLPHALLKETQILESD 338 >gi|25028272|ref|NP_738326.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium efficiens YS-314] gi|23493556|dbj|BAC18526.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium efficiens YS-314] Length = 328 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 148/313 (47%), Gaps = 36/313 (11%) Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72 A+ S VG TS NP V +I+ DG + G G T G HAEV AL AG ARG TA Sbjct: 10 AIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHAEVMALAAAGPRARGGTA 69 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 VTLEPC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G VD + Sbjct: 70 VVTLEPCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--VDTHLLG 126 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 L +L R HITLK A + D S ITG ++ VH R + DA Sbjct: 127 LPVPTLSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDA 186 Query: 193 ILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 I+VG GT L D+P LT R GL +H P R+++ Sbjct: 187 IIVGTGTALTDNPSLTARGPAGLYDHQPRRVVI--------------------------G 220 Query: 252 DDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 PV A N++ + + + + L L G +L+EGG +A + + + L+D+ Sbjct: 221 RRPVPA----GSNLDRLGFEQYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDA 276 Query: 311 IILYRSQIVIGEG 323 I Y + ++G G Sbjct: 277 IRAYVAPAILGAG 289 >gi|222151702|ref|YP_002560858.1| hypothetical protein MCCL_1455 [Macrococcus caseolyticus JCSC5402] gi|222120827|dbj|BAH18162.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 341 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 165/358 (46%), Gaps = 34/358 (9%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +++ A +W G T NP+V C+IVKD ++G G G HAEV A+ AG A+G Sbjct: 2 YINKAFELVKWTEGQTGMNPAVGCVIVKDDRIVGIGAHLTEGEAHAEVNAIHMAGSHAQG 61 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT Y TLEPCSH+G++PPC + I+ GI +VV DV +S G++++ + I V+++ Sbjct: 62 ATLYCTLEPCSHHGKTPPCTEKIVAAGISKVVYAA--SDVTLSS-GVKYMRSESIEVEKV 118 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 F + T + ++T+K+A + D S IT S+ H +R + Sbjct: 119 ECRAIDDFYAPFFTSKTSSLPYVTIKMATTVDGKTADDESISKWITNEKSRAHAHEVRYR 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG T D P L RL +K K+I T P ++ T Sbjct: 179 MDAIMVGYNTYKKDIPTLDARL----------------YKDKRIKKVIVTN--GPFVLNT 220 Query: 250 ENDDP--------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++D+ V A+ + + +I+ + +L L + +LL+EGG + Sbjct: 221 QDDNDYDRSRLIIVSAIEQHIEGVTVIHVPHLSPEHILKALYNERIRNLLIEGGMQTIRT 280 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 FI ++ + I Y + ++G L L +F V + F DV L Y Sbjct: 281 FIEAKYYNEIHHYIAPKLLGGTSKHQFLTTDTLSSMRDMTHFNLVSVNQFDDDVLLIY 338 >gi|42524894|ref|NP_970274.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bdellovibrio bacteriovorus HD100] gi|39577104|emb|CAE78333.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bdellovibrio bacteriovorus HD100] Length = 394 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 104/338 (30%), Positives = 178/338 (52%), Gaps = 26/338 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 MS A+ + S NP V +++ G + G + G PHAEV AL+ + E+ + Sbjct: 22 MSLAISEAYQGAARVSPNPLVGAVVLDAQGGFLSAGHHEFYGGPHAEVNALKNLSPEQLK 81 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124 GA A+VTLEPC+H G++P CA+ + + +++V + DP+ V+G+G + L Q I Sbjct: 82 GAHAFVTLEPCAHEGKTPSCAKMMAKLPLKKVTFGLIDPNPLVAGQGAEILRQARIEAEV 141 Query: 125 ------IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 ++D +++E + A+L +K+ ++LK+A S D + + S ITG Sbjct: 142 FSSANPVLDAKIKTELEEVCEAFLWNFRKKKVFVSLKMASSLDGQVALRSGESQWITGPE 201 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-----LDPHF-KLSL 232 S+ VH +RA D ILVG GT+ D+P L R + + + + ++ L P+F KL L Sbjct: 202 SREYVHYIRACHDGILVGKGTIDFDNPSLNIRHPQITKKNKVIVVDGEAELLPNFTKLKL 261 Query: 233 DSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRG 286 + + + E + V L K+ +++Y R DL+ LL L +G Sbjct: 262 SE--VHASEDVIWCVAEELREKVEKLRGTLVKSPDVVYVKTRVGGDLDLEDLLAQLYQKG 319 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + S++VEGGA A SF++ LV+ + ++++ I++G GG Sbjct: 320 LRSVMVEGGAFTASSFVSYHLVNRLYMFQAPIIMGSGG 357 >gi|260904122|ref|ZP_05912444.1| riboflavin biosynthesis protein RibD [Brevibacterium linens BL2] Length = 359 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 111/328 (33%), Positives = 165/328 (50%), Gaps = 39/328 (11%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDG-IVIGRGVTAYGGCPHAEVQALE 61 + + MSAAL+ +R G NP V A ++ +D IV+G A G PHAEV A+ Sbjct: 6 TELETTAMSAALQAARN--GHRGANPLVGAAILTRDSQIVVGH--HAGAGSPHAEVDAIT 61 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A G + +T +VTLEPC+H GR+ PC Q II+ GI VV + D + +G G Sbjct: 62 TAIDLGVDLTASTLFVTLEPCNHIGRTGPCTQAIIDAGIPEVVFALSDSNGVAAGGGAT- 120 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ G+ V + + L+A +R V+ +R +T+KIA S D M+ + S IT Sbjct: 121 LAEAGVRVRSGLGHDESSALNARWSRAVDAERPFVTVKIAQSLDGMVAASDGTSQWITSA 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSK 235 S+ H R++ D ILVG GTVLADDP L R G E P+ I+L SL S+ Sbjct: 181 ASRVHSHKYRSRVDGILVGTGTVLADDPRLNARGPGGDPLESQPVPIVLG---LTSLPSE 237 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 +F N + ++ RD+ L L RG+ +LVEGG Sbjct: 238 -----------------------SFLALNPDTVHLRTRDITAALGELHARGMRHILVEGG 274 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG 323 +V +F + +VD + Y++ +++G G Sbjct: 275 PSVLGAFFAAGVVDEVFCYQAPLLVGAG 302 >gi|182439882|ref|YP_001827601.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468398|dbj|BAG22918.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 366 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 117/347 (33%), Positives = 177/347 (51%), Gaps = 13/347 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAISLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G L Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKT 239 VH LRA++DA+LVG GT DDP+L R ++G + P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVRGIDGATQ--PLRVVVDTNATAVKPGARVLDA 239 Query: 240 ALLAPVIIVTENDDPV--LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++ +D P L A + DL LL L RGV S+L+EGG Sbjct: 240 TAA--TLVAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPT 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 +A +F+ + VD ++ Y + +++G G P+ L + + +R D Sbjct: 298 LAGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLD 342 >gi|228472970|ref|ZP_04057727.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis ATCC 33624] gi|228275552|gb|EEK14329.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis ATCC 33624] Length = 347 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 102/331 (30%), Positives = 163/331 (49%), Gaps = 16/331 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M L + +G T NP V +IV G +IG G G PHAEV A+ Sbjct: 2 TIDQRYMQRCLSLAGKALGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAIASVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + + + YV LEPC+H+G++PPCA IIE I +VV+ D +V+G+G++ L + Sbjct: 62 DSSLLKESVLYVNLEPCAHFGKTPPCADLIIEKEIPKVVIGCMDIFSKVAGKGIERLQKA 121 Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178 G +V ++E+E + + T + R +I LK A +++ +I V I+ Sbjct: 122 GREVVVGVLENECQALNTRFFTFHSKGRPYIILKWAQTRNGLIAPLHQEQQAPVWISNEF 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ HL RA+ AILVG TV D+P LT R +P+R++++ L LD+ + Sbjct: 182 SQQLTHLWRAEEGAILVGRTTVERDNPSLTVR--HWVGKNPLRLVIEGEHSL-LDTFNVF 238 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 P ++ + P + + D ++ L R + SL+VEGGA V Sbjct: 239 QG--EPTVVFSSKQSP----NTEHVSYQTLSSDLSMPNEVCNYLYDRQIQSLIVEGGAQV 292 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 FI+ L D ++ + E GI +PL Sbjct: 293 LQQFISEGLWDEARIFVGKSQFSE-GIKAPL 322 >gi|315224801|ref|ZP_07866622.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea F0287] gi|314945204|gb|EFS97232.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea F0287] Length = 331 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/333 (29%), Positives = 159/333 (47%), Gaps = 29/333 (8%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M ++ + +G T NP V +IV +G +IG G G HAEV+A+ Sbjct: 7 TVDEWYMHRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVRAITSVK 66 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G++ L Sbjct: 67 DKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGIEKLRNA 126 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP---ITGFI 178 G V + E+E + + T + R +I LK A ++D I V I+ Sbjct: 127 GCEVTVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPHWISDVY 186 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP Sbjct: 187 ARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDP------------ 232 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDC-------RDLKKLLTILVGRGVTSL 290 L +P ND + ++ +I+ D + L+++ L + S+ Sbjct: 233 -KLRSPKEFAVWNDRTTTLFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSM 291 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +VEGG FI+ L D +++ I GEG Sbjct: 292 IVEGGGYTLQQFIDEGLWDEAVVFTGDICFGEG 324 >gi|262202280|ref|YP_003273488.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM 43247] gi|262085627|gb|ACY21595.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM 43247] Length = 333 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 112/319 (35%), Positives = 164/319 (51%), Gaps = 33/319 (10%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 M A+ S G+++ NP V +IV + G ++G G TA G PHAE+ AL +AG AR Sbjct: 6 LMRQAITESAAAQGVSTPNPPVGAVIVDRAGTIVGVGHTAPPGGPHAEIVALTQAGAAAR 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GATA VTLEPC+H GR+ PC+Q +I G+ V V DP+ +G G L G+ VD Sbjct: 66 GATAVVTLEPCNHTGRTGPCSQALIAAGVAHVCFGVADPNPTAAG-GADTLRAAGVSVDA 124 Query: 129 --MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + L +L RQ R +T+K+A S D + + S +TG ++ H Sbjct: 125 GVLADEVAAGPLQPWLHRQTTGRPFVTVKLATSIDGRVAASDGTSQWVTGPAARAHAHER 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRL-NGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R++ DAI+VG GT LADDP LT R +G + H P R+++ H L D+ + A Sbjct: 185 RSRIDAIVVGTGTALADDPSLTARRPDGTRYPHQPTRVVVG-HRDLPADANLRDDAA--- 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P+L +A R+ L L L +LVEGG +A +F+ Sbjct: 241 ---------PLLRVATREP--------AEVLDALDDAL------WVLVEGGPTLAGAFVA 277 Query: 305 SRLVDSIILYRSQIVIGEG 323 + LVDS+ Y + +++G G Sbjct: 278 AGLVDSVEAYVAPVLLGAG 296 >gi|330752436|emb|CBL87386.1| riboflavin biosynthesis protein [uncultured Flavobacteria bacterium] Length = 310 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/303 (33%), Positives = 150/303 (49%), Gaps = 33/303 (10%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRSPPC 88 V CLIVKD +IG G T G HAEV A++ + + AT YVTLEPCSH+G++PPC Sbjct: 2 VGCLIVKDDEIIGEGYTDPYGGSHAEVNAIKSVKNQELLKSATLYVTLEPCSHHGKTPPC 61 Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147 I+ I RVV+ DP +V G+G+ L G ++ + E+ K+ +LT + Sbjct: 62 CDLILSRQIPRVVIGCIDPHEKVCGQGIARLKASGCQVIVGVEEALCKLHHKRFLTYHTK 121 Query: 148 KRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 KR +I LK A S++ + S I+G +S+ VH RA+ AILVG TV+ D+ Sbjct: 122 KRPYIILKWAQSKNGFVAPKNKNSNRAFWISGKLSRQLVHQWRAEEQAILVGANTVIKDN 181 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN----DDPVLALAF 260 P LT R + +P+RI++ + KLS I A I++ + D+P Sbjct: 182 PSLTTR--HVVGKNPIRIVVSNNKKLSRQLNIFNGD--AQTILLNTDKFKIDEP------ 231 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 I CD L + +TSL+VEGG F++ L D ++ I Sbjct: 232 ----IGTQICD---------KLFSKKITSLIVEGGPKTLDYFLSENLWDEARIFEGNTDI 278 Query: 321 GEG 323 EG Sbjct: 279 KEG 281 >gi|118473539|ref|YP_887383.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str. MC2 155] gi|118174826|gb|ABK75722.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str. MC2 155] Length = 335 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 116/345 (33%), Positives = 168/345 (48%), Gaps = 44/345 (12%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +I+ +DG V G G T G PHAEV AL A E A G TA VTLEPC+H Sbjct: 21 GATYPNPPVGAVILDRDGQVAGVGGTQPTGGPHAEVMALRAAAERAEGGTAVVTLEPCNH 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE--GKIFLH 139 +GR+PPC ++ GI RVV V DP+ +G G ++ GI V + S+ L Sbjct: 81 HGRTPPCVDGLVAAGISRVVYAVADPNPVAAG-GSARMASSGIEVTSGVLSDEVAGGPLR 139 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +L +Q H+T K A S D A S IT ++ VH RA +DAI+VG GT Sbjct: 140 EWLHKQRTGLPHVTWKFATSVDGRSAAADGSSQWITSAAARADVHRRRAAADAIVVGTGT 199 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 V DDP LT RL L + P+R+++ ++S D+ ++ NDD Sbjct: 200 VFVDDPSLTARLPDGTLADRQPLRVVVG-RREVSSDANVL-------------NDDS--- 242 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + D ++L L R T +++EGG +A +F+ + +V+ I+ Y + Sbjct: 243 --------RTMVIRTHDPHEVLRALSDR--TDIMLEGGPTLAGAFLRAGVVNRILAYVAP 292 Query: 318 IVIG-------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 I++G + G+PS F CV+ G DV + + Sbjct: 293 ILLGGPITAVDDVGVPSIAHAQRWR--FDCVQ--TIGPDVLMSLV 333 >gi|297627300|ref|YP_003689063.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923065|emb|CBL57649.1| Riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 406 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/310 (33%), Positives = 153/310 (49%), Gaps = 40/310 (12%) Query: 28 NPSVAC-LIVKDGIVIGRGV---TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83 NP V C L+ DG VI G A + A G + RGATA V+LEPC+H+G Sbjct: 83 NPRVGCVLLAPDGGVIAEGWHRGAGTAHAEAAALAAARAVGSDVRGATAVVSLEPCAHWG 142 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 R+ PCA + + GI RVV V DP+ +G G Q L ++G+ ++ + E+ G+ L +L Sbjct: 143 RTGPCAVALADAGITRVVFSVPDPNPVAAG-GTQVLRERGVEVIGGVAEASGREALGDWL 201 Query: 143 TRQVEK-------RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 RQV R + +K+A + D + A S ITG +++ H RA+ AI+V Sbjct: 202 ARQVAPLPGEVGARPQVLVKMAATLDGRVAAADGTSRWITGPAARDHAHGTRARVGAIVV 261 Query: 196 GIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 G GT+LADDP LT RL L +H P+R+++ PV DD Sbjct: 262 GTGTLLADDPALTARLPDGSLADHQPLRVVMGTR----------------PV-----PDD 300 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A R ++ D ++L L RGV +L+EGG +A +F+ + L D + Sbjct: 301 ----AAVRGPGGALLALRTHDPAEVLRELSSRGVREVLIEGGPTIASAFLAAGLADELHA 356 Query: 314 YRSQIVIGEG 323 Y S ++G G Sbjct: 357 YISPALLGAG 366 >gi|163788599|ref|ZP_02183044.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium ALC-1] gi|159875836|gb|EDP69895.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium ALC-1] Length = 323 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 155/309 (50%), Gaps = 27/309 (8%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79 +G T NP V +IV D +I G T+ G HAEV A+ +++ +T YVTLEPC Sbjct: 8 LGFTRPNPMVGAVIVHDKKIISEGFTSTYGGNHAEVNAINSIKDKSLLEKSTLYVTLEPC 67 Query: 80 SHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIF 137 SH+G++PPC+ I++ I V++ CVDD + V+G+G+ L G V ++E+E K Sbjct: 68 SHHGKTPPCSDLILKHKIPEVIIGCVDD-NPEVAGKGIAKLKASGCKVTVGVLEAECKTH 126 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAIL 194 + T +KR +I LK A ++D I V IT S+ VH RA+ AIL Sbjct: 127 HKRFFTFHNKKRPYIILKWAETKDGFIAPETKNEKKPVWITNPYSRQLVHKWRAEEQAIL 186 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TVL D+P LT R +P R+++D KL+L+ + A +TE Sbjct: 187 VGTNTVLEDNPSLTVR--DWDGENPTRVVIDRTSKLNLNFNVFSDE--AKTTRLTE---- 238 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L + F K I + ++ +L + S+++EGGA +FI+ L D ++ Sbjct: 239 -LNIDFNKP-IAV---------QVANMLYQSNINSIIIEGGAKTLQTFIDEGLWDEARVF 287 Query: 315 RSQIVIGEG 323 I G Sbjct: 288 IGDIDFKNG 296 >gi|298373665|ref|ZP_06983654.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274 str. F0058] gi|298274717|gb|EFI16269.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274 str. F0058] Length = 349 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/362 (29%), Positives = 168/362 (46%), Gaps = 39/362 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M + +R+ G + NP V +IV+DG +IG G G HAEV A+ + Sbjct: 4 DEQYMRRCITLARYADGYAAPNPMVGAVIVRDGKIIGEGYHRRYGEAHAEVNAVNSVLNK 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 R +T YV LEPCSHYG++PPC I+ GI VVV + D + V G G++ L + G+ Sbjct: 64 DLLRRSTLYVNLEPCSHYGKTPPCVDLIVRSGIPNVVVGMRDVNPEVCGNGIRKLLEAGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179 +V+ ++E E + ++T +KR +I LK A + D I + I+ + Sbjct: 124 GVVEGVLEDECRFLNRRFITFMQKKRPYIILKWAQTADGFIDELRDTPARKPLKISNPTT 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 K H +R +I+V T + D+P LT + NG +P+RI++D + ++ I Sbjct: 184 KTLNHCMRTHEMSIMVATRTAILDNPRLTASKWNG---RNPIRILIDRTLSVPIEYNIF- 239 Query: 239 TALLAPVIIVTENDDPVLALAFR------KKNINIIYCDCRD--LKKLLTILVGRGVTSL 290 DD L F NI + D + ++L L R + S+ Sbjct: 240 -------------DDKAKTLVFNSIRNEINDNIEFVKLDFEQNIIPQILNELYVRNIQSV 286 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +VEGG + SFI + D S+ +I G+P+P + V FG ++ Sbjct: 287 IVEGGRRLLVSFIEYGVWDECHTEVSKQII-RNGVPAP-----SMIDLEPVAEQQFGENI 340 Query: 351 CL 352 C Sbjct: 341 CF 342 >gi|295839977|ref|ZP_06826910.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74] gi|295827729|gb|EFG65559.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74] Length = 364 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 111/306 (36%), Positives = 159/306 (51%), Gaps = 9/306 (2%) Query: 22 VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 +G T NP V C+++ G V G G + PHAE+ AL A E + TA VTLEPC Sbjct: 21 LGRTRHNPVVGCVVLDASGEVAGSGWHSGAAVPHAEIHALARAEELSGVDTALVTLEPCD 80 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139 H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+ ++E+E Sbjct: 81 HTGRTGPCSRALIEAGVRRVVYAVADPTDQATG-GAGTLRAAGLDVEHGLLEAEAADVNA 139 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+LT R H+T K A S D A S IT ++ VH LRA DA+LVG GT Sbjct: 140 AWLTSARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199 Query: 200 VLADDPELTCR-LNGLQEHSPMRIILDPH-FKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 ADDP L R + G + P+R++LD + ++++ A AP +I +D P A Sbjct: 200 ARADDPHLAVRGVPGAPQ--PLRVVLDTEGTAVRAGARVLDDA--APTLIALADDAPAPA 255 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + DL LL L R V +L+EGGA +A SF+ + D ++ Y + Sbjct: 256 HGAELLRLPRAAHGGLDLTALLAALYARDVRGVLLEGGARLAGSFVAAGCADRVVGYLAP 315 Query: 318 IVIGEG 323 +++G G Sbjct: 316 VLLGAG 321 >gi|300775167|ref|ZP_07085029.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC 35910] gi|300505907|gb|EFK37043.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC 35910] Length = 341 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/359 (29%), Positives = 169/359 (47%), Gaps = 29/359 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++ + ++ +G T NP V +IV +G +IG G G HAE+ A+ + Sbjct: 4 DELYIKRCIELAQKALGKTYPNPLVGSVIVHNGEIIGEGYHHKAGENHAEINAINSVKNK 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +T YV+LEPC+HYG++PPCA I E G ++VV+ D +V+G+G + + + GI Sbjct: 64 DLIPESTIYVSLEPCAHYGKTPPCALKIRELGFKKVVIGAMDSHDKVNGKGKKIIQEAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E E + T +KR +I LK A S D + ++ + V Sbjct: 124 EAVSGILEKECIELNKRFFTYHEKKRPYIILKWAESGDGFLD-KDFKPTAVSNTLVNQFV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239 H LRA AILVG T L D+P LT R + +P+RI++D K+ I KT Sbjct: 183 HQLRADEHAILVGTQTALNDNPSLTVR--NAEGVNPVRILIDFDLKVPAHFNIYNNDAKT 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAV 298 +L V EN +I I + D L +L+ L + S+++EGG Sbjct: 241 LVLNSVKEGIEN------------HIQFIKINKDDFLPELMKALYKEQIQSIIIEGGRFT 288 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 FI++ L D I+ +++ + E G +P E N+ R + F + Y K Sbjct: 289 LQQFIDANLWDEAIVIKNENLKLENGTKAP------EFNYTADRLENFRDNTVSFYRQK 341 >gi|307564973|ref|ZP_07627490.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A] gi|307346286|gb|EFN91606.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A] Length = 313 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 167/354 (47%), Gaps = 54/354 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 M + D +M L+ ++ + L NP V +IV D G +IG G G HAEV A Sbjct: 1 MELKEIDEMYMRRCLQLAKNGMLLAKPNPMVGAVIVSDNGRIIGEGYHICYGKEHAEVNA 60 Query: 60 LEEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++ +T YV LEPCSH+G++PPCA II+ G+ RVV DP VSGRG Sbjct: 61 FASVRKKDEHLLSKSTIYVNLEPCSHFGKTPPCADLIIKKGVGRVVCGCIDPFSVVSGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 +Q + + GI V ++E E ++T +KR +I LK A + + IG+ G + I Sbjct: 121 VQRIREAGIPVSVGVLERECLALNKRFITFNTKKRPYIILKWAQTANGFIGIKG-DVLKI 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +K VH LRA++DAI+VG T + + P+L R SP++++L S Sbjct: 180 STSFTKMLVHKLRAENDAIIVGRNTEMLEHPQLNVR--KWWGKSPLKVVL---------S 228 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + A+ D+ LL L R S+++EG Sbjct: 229 STLPEAI-------------------------------HDIPTLLNELHRRMCQSVIIEG 257 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348 GA +FI + L D I + S + I E GI +P L + V+++YF + Sbjct: 258 GAMTLENFIKNDLYDEIRVEESSLTIKE-GIKAP----QLPTDIRVVKKEYFDN 306 >gi|182415465|ref|YP_001820531.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1] gi|177842679|gb|ACB76931.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1] Length = 389 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 159/330 (48%), Gaps = 24/330 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 FM AL +R G T NP V LIV++G V+ G A G PHAE AL G+ R Sbjct: 12 FMRRALEVARKGWGDTHPNPMVGALIVEEGRVVAEGFHAQDGGPHAERLALLNRGKPPRA 71 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCS GR+ C II GI++VVV DP+ SG+G + L G+ ++ Sbjct: 72 GATMYVTLEPCSTSGRTGACTDAIISSGIKQVVVGATDPNPEHSGKGFEVLRAAGVEVIH 131 Query: 128 RMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++E E IF H ++ R I K AV+ D + S ITG ++ V Sbjct: 132 GVLERECTDLNLIFNH-WIHRATPL---IASKSAVTLDGRMACRTGESKWITGEPARANV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TA 240 H+ R AI VG GTV D+P LT R+ G E P+R + D + +D ++ K Sbjct: 188 HVWRRLFPAIAVGAGTVFKDNPRLTARVEGQPEWCPIRFVFDGLLRTVVDKQLPKLYTDE 247 Query: 241 LLAPVIIVTENDDPVLALAFRKK------NINIIYCDCR--DLKKLLTILVGRGVTSLLV 292 + ++VT P L + +K + +I + + + V V +L Sbjct: 248 FHSRTVVVT---TPHGGLGYVRKLREMGVQVWVIPSPTQRVPMSEFRKKCVEERVAGVLF 304 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 EGGA + + + +D + +YR+ ++ + Sbjct: 305 EGGAQLVSHLLQEKQLDYLFIYRAPVLFAD 334 >gi|116617932|ref|YP_818303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096779|gb|ABJ61930.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 344 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/307 (31%), Positives = 150/307 (48%), Gaps = 21/307 (6%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 T NP V +IVKDG VI G G HAE+ A + GAT YVTLEPCS Sbjct: 22 TFENPRVGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTLEPCSTQ 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK----IFL 138 G+ CA I G++RVVV DP+ +G+G++ L GI VD + E K F Sbjct: 82 GKVGSCAVQIQNWGLKRVVVGSIDPNPSTNGKGIKMLRSAGITVDVLNTVENKEINPAFH 141 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 + Y TR ++ LK+A+SQ+ + +T ++ VH RA AI++G Sbjct: 142 YFYTTR----LPYVQLKLAMSQNGFVAEKFGKRKKLTDELADTDVHRERATRSAIMIGSE 197 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 T++ D P LT R + P+R+++D +L + L I TEN + Sbjct: 198 TMITDQPMLTVRHINISHKQPLRVVIDRRGRLQNTNFDFSNNWL----IYTEN------V 247 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 F K++ + + LK +L L + + S++VEGG ++ HSF+ L +++Y + Sbjct: 248 LFSKQH-SYVKLMSGALKDILIDLAKQNIQSVMVEGGPSLIHSFLKENLWQEMLIYTTDK 306 Query: 319 VIGEGGI 325 V+ + + Sbjct: 307 VLSKDSL 313 >gi|284991537|ref|YP_003410091.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM 43160] gi|284064782|gb|ADB75720.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM 43160] Length = 358 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 116/330 (35%), Positives = 176/330 (53%), Gaps = 34/330 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M VS+ + M+ A +G TS NP+V A ++ DG +G G TA G PHAEV+A Sbjct: 1 MTVSAAELSAMARARELGAGVLGTTSPNPAVGAVVLAADGTPVGEGATAPPGGPHAEVRA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 LE+AGE A G TA VTLEPC+H GR+ PCA ++ G+ RVVV V +P +++G G L Sbjct: 61 LEQAGERACGGTAVVTLEPCAHTGRTGPCADALLAAGVARVVVAVPEP-TQLAGGGAARL 119 Query: 120 SQKGIIVD----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 G+ V+ + EG L A+LT E R + K+A + D + A S +T Sbjct: 120 RAAGVEVELGVAQQAAEEGA--LGAWLTGVREGRPFVVWKVAGTLDGRVAAADGSSRWVT 177 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLD 233 G ++ VH LRA DA+++G GT LADDP+LT R ++ + P+R++LD +L Sbjct: 178 GPDARAAVHRLRATCDAVVIGSGTALADDPQLTVRDADGRDAARQPLRVVLDRRRRLPRT 237 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++++ A AP ++ T ++LL L R V +L+E Sbjct: 238 ARVLDDA--APTLVSTAASP----------------------RELLGELFARDVRRVLLE 273 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GG +A +F+ LVD +++ + ++G G Sbjct: 274 GGPTLAAAFLRDGLVDEAVVHLAPKLLGAG 303 >gi|117928481|ref|YP_873032.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidothermus cellulolyticus 11B] gi|117648944|gb|ABK53046.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidothermus cellulolyticus 11B] Length = 366 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 114/309 (36%), Positives = 150/309 (48%), Gaps = 39/309 (12%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V C+++ G V+G G G PHAEV AL AG ARG T VTLEPC H Sbjct: 30 GSTSPNPIVGCVVLDAAGRVVGEGFHLRAGGPHAEVVALAAAGPAARGGTLVVTLEPCRH 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 GR+ PC I GIRRVV V DP G + +V ++ +E A+ Sbjct: 90 VGRTGPCVAEIRRAGIRRVVYAVADPTAAGGGGAELAAAGLD-VVGGVLAAEAAAANRAW 148 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L R R +T K A + D + A S IT ++ VHLLRAQSDAI++G GT L Sbjct: 149 LHRVATGRPFVTWKYAATLDGRVAAADGSSRWITSDEARRDVHLLRAQSDAIVIGTGTAL 208 Query: 202 ADDPELTCRLNGLQEH--SPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 ADDP LT R++ P+R++ L P +L DD Sbjct: 209 ADDPALTVRVDDAAPDLTQPLRVVVGRRDLPPGARL--------------------RDDT 248 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + RK D +L L RGV S+L+EGG +A +F+ +RLVD I+ Y Sbjct: 249 APTVQLRKH----------DPAAVLARLADRGVLSVLLEGGPTLAAAFLRARLVDRIVAY 298 Query: 315 RSQIVIGEG 323 + I++G G Sbjct: 299 VAPILLGSG 307 >gi|260655866|ref|ZP_05861335.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33 E1] gi|260629482|gb|EEX47676.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33 E1] Length = 358 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 125/361 (34%), Positives = 182/361 (50%), Gaps = 21/361 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + G TS NP V C+IV+DG VI G G PHAE AL AGE A GA Sbjct: 1 MRMALSLAARGAGTTSPNPMVGCVIVRDGHVIATGWHRAPGAPHAEAAALAAAGERAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV LEPC+H GR+PPCA ++ + RVV + DP +V+G+G+ L + GI VD + Sbjct: 61 TVYVNLEPCAHQGRTPPCAPALVSAKVVRVVAGLVDPFPQVAGKGIGILREAGIEVDCPV 120 Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E +L+ +L+ KR +TLKIA S D + + S ITG ++ HLLR++ Sbjct: 121 LAEESAWLNRGFLSAVKRKRPWVTLKIASSLDGITALPDGTSQWITGPTARKLGHLLRSE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP----V 245 +DA++VG T D P L R + SP +++ S+ A+L P Sbjct: 181 NDAVMVGGTTARRDKPRLDVR--DVDGPSPRPVVV---------SRDFSAAMLLPRSGDA 229 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + P+ + DL +L L RGV LLVEGG +A S + Sbjct: 230 LAYAADGCPIPDKLKGRAATVPTGPGGLDLSAVLADLCRRGVNRLLVEGGGTLASSLLQE 289 Query: 306 RLVDSIILYRSQIVIGEG-GIPSP-LEEGYLEK-NFMCVRRDYFGSDVCLEYIGKNLCLQ 362 LVD + ++++ V+G+G G+ L E L + NF+ D+ +E G + C Q Sbjct: 290 GLVDQLSVFQAPCVLGKGTGMAQELLTESLLARWNFVRTAERRVDDDLWIE--GVSPCSQ 347 Query: 363 E 363 + Sbjct: 348 D 348 >gi|326773583|ref|ZP_08232866.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505] gi|326636813|gb|EGE37716.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505] Length = 362 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 103/322 (31%), Positives = 147/322 (45%), Gaps = 36/322 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEE 66 M ALR + NP V C+I+ DG V+ G G HAEV AL G Sbjct: 12 MQRALRAAASPDTPPGPNPRVGCVILSSDGDVLAEGHHRGAGSAHAEVDALANLAATGAS 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT VTLEPC+H GR+ PC Q +++ G+ V+ DDP + G G L G+ V Sbjct: 72 ARGATVLVTLEPCNHQGRTGPCVQALLDAGVAEVIYAQDDPTEQAGG-GAATLEAGGVRV 130 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 R + E +L R +T K+A + D I A S IT +++ H Sbjct: 131 RRGLCAQEAARLNRPWLLAVTRGRPMVTWKLAATLDGRIAAADGTSQWITPVAARHDAHR 190 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSKIIKTAL 241 LR Q DAI+VG GT LADDP LT R Q P+R+ ++ + Sbjct: 191 LRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRV-------------VVGSRS 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 L P V +D + + D + +L L R + +L+EGG +A + Sbjct: 238 LPPTARVLADD-------------HYLLLPDHDPRAVLAALAEREIRHVLLEGGPTLATA 284 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ + LVD ++ Y + ++G G Sbjct: 285 FLRAGLVDRVVAYTAPALLGAG 306 >gi|318081273|ref|ZP_07988605.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF] Length = 254 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 105/191 (54%), Gaps = 3/191 (1%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 +G T NP V C+++ G V G G G PHAE+ AL AGE ARG TA VTLEPC Sbjct: 21 LGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGGTALVTLEPCD 80 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLH 139 H GR+ PC++ +IE G+RRVV V DP + +G G L G+ V+ ++E E Sbjct: 81 HTGRTGPCSRALIEAGVRRVVHAVADPTDQATG-GADTLRAAGVDVEHGLLEREAADVNA 139 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+LT R H+T K A S D A S IT ++ VH LRA DA+LVG GT Sbjct: 140 AWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATCDAVLVGSGT 199 Query: 200 VLADDPELTCR 210 DDP L R Sbjct: 200 ARTDDPHLAVR 210 >gi|258647712|ref|ZP_05735181.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC 51259] gi|260852547|gb|EEX72416.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC 51259] Length = 322 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 109/328 (33%), Positives = 150/328 (45%), Gaps = 45/328 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 +M LR + NP V +IV +IG G A G HAEV A+ + R Sbjct: 7 YMHRCLRLAENGRLSAPPNPMVGAVIVYKDRIIGEGYHAKCGQAHAEVNAIASVRPDDRP 66 Query: 69 ---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +T YV+LEPC+HYGR+PPCA+ I+ GI RVVV +DP +V GRG+ L G+ Sbjct: 67 HLQDSTLYVSLEPCAHYGRTPPCARLILNTGIPRVVVGCEDPFDKVEGRGITMLRDGGVQ 126 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISK 180 V ++E E + + T + R +ITLK A S D + V ++ S Sbjct: 127 VTVGVLEQECRELNRHFFTFHTKHRPYITLKWASSADGFVDSWREDEAAAPVKLSNAHSL 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA AILVG GT+ AD P+L R +P R++L Sbjct: 187 MDVHRLRAYHQAILVGHGTLKADRPQLNVR--DWVGSNPQRLVLG--------------- 229 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V E++ P A+ D+ LL L +G+ SLLVEGG Sbjct: 230 ------HVGEDELPAGFTAY------------ADVATLLQSLTEQGIQSLLVEGGPQTQR 271 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328 +FI L D I S + +G G+P+P Sbjct: 272 AFIERGLWDEAIEELSPLTLGS-GVPAP 298 >gi|167565784|ref|ZP_02358700.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis EO147] Length = 357 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 105/325 (32%), Positives = 153/325 (47%), Gaps = 21/325 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I D V+G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHDEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++ + Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ME+E + + +R R K+ +S D + + T S++ V RA+ Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S +L G P R NG +P ++ F +LD+ T + P + + Sbjct: 181 SSVVLAPHGV-----PFPAAR-NGA---APGYVVRSRDFA-ALDASPATTEGV-PTLALH 229 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D V A + D L L L +GV L ++ A+ + Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328 L D ++LY + G+P P Sbjct: 290 EGDLADELLLY---VHPSRCGVPVP 311 >gi|149197492|ref|ZP_01874543.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa HTCC2155] gi|149139510|gb|EDM27912.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa HTCC2155] Length = 342 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/327 (30%), Positives = 159/327 (48%), Gaps = 45/327 (13%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A+ + G TS NP V +IVKDG VI G G HAE A+ A E R Sbjct: 4 KWMQRAIDNALKAWGHTSPNPHVGAVIVKDGEVIADGWHKKAGTHHAEKDAITNAKEAGR 63 Query: 69 -----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+T YVTLEPC YGR+ PC ++I++ GI +VV D + +GRG +L Q G Sbjct: 64 EDDLYGSTIYVTLEPCCTYGRTEPCTEWIMDAGIAKVVYGCTDSNPEHAGRGFNYLLQAG 123 Query: 124 IIVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ + E + ++ + + + E++ ++ LK+A + D I S ITG ++++ Sbjct: 124 VEIEGPILEEECLAINRFFFKWIDEQKPYVILKMAQTLDGKIATESGQSQWITGAEARHE 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-----LDPHFKLSLDSKII 237 V LR DAI+VG T+ D+P L R H P R I LD +FK Sbjct: 184 VQKLRQGCDAIMVGSETLRQDNPSLNVREIENPRH-PKRYIWSRSDLDQNFK-------- 234 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEG 294 AF ++ YC + + + L+ L G +TSLL+EG Sbjct: 235 ---------------------AFTQEG-GATYCRAQSKNEWQYFLSQLGGEEITSLLLEG 272 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG 321 G +A + + +++VD I + + ++G Sbjct: 273 GGFLASAALKAQIVDEIQFFIAPKILG 299 >gi|326520824|dbj|BAJ92775.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 468 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 99/321 (30%), Positives = 165/321 (51%), Gaps = 21/321 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG+ Sbjct: 123 MDAHYMRRCVELARTAAGHTSPNPMVGCVIVREGKVVGEGFHPKAGQPHAEVFALRDAGD 182 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC++ +I+ ++ VVV + DP+ V+ +G++ L GI Sbjct: 183 LAENATAYVSLEPCNHYGRTPPCSEALIKAKVKEVVVGMTDPNPIVASKGIEKLRNAGID 242 Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183 V +E + L+ AY+ R + ++ TL+ +S + + I G G+ G+ S+ Sbjct: 243 VRVGVEEALCLRLNEAYIHRMLTGKAFATLRATLSMNGIVINQIGSGTDQPGGYYSQ--- 299 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 L + D +++ A ++ Q P+ II+ LD + + Sbjct: 300 --LAKEYDGVIISSDMAKATALPMSREAGAKQ---PLYIIIAQGQGSKLDIPFLDEESAS 354 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--AA 297 I++ D PV +++ D +L+ +L +L RG+ S+LV+ GG A+ Sbjct: 355 NAIVLA--DSPV---TVEPAGVSVSVLDQMNLESILQLLADRGLCSVLVDFRDAGGVLAS 409 Query: 298 VAHSFINSRLVDSIILYRSQI 318 + F +LV ++L S + Sbjct: 410 LLSKFQEDKLVQKVVLELSPV 430 >gi|3378525|emb|CAA08869.1| riboflavin-specific deaminase [Thermotoga neapolitana] Length = 241 Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 91/222 (40%), Positives = 130/222 (58%), Gaps = 9/222 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGCPHAEVQALEEA---G 64 RFM A+ ++ +G + NP V ++VK+G +I G + PHAE A+E A G Sbjct: 4 RFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRKG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ VSG G++ L + GI Sbjct: 64 EDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGI 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ ++E E K ++T E R I LK A + D I A S IT + +++ Sbjct: 123 EVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKA 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 H +R A+LVG TVL DDP LTCRL G + +P R+ILD Sbjct: 182 HEMRNVYSAVLVGARTVLKDDPRLTCRLKGGR--NPTRVILD 221 >gi|256372450|ref|YP_003110274.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans DSM 10331] gi|256009034|gb|ACU54601.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans DSM 10331] Length = 350 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 107/299 (35%), Positives = 149/299 (49%), Gaps = 37/299 (12%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPP 87 NP V +I +DG+V+G G TA+ G PHAEV AL AG ARGA VTLEPC+H+GR+PP Sbjct: 22 NPWVGAVIERDGVVVGVGRTAHPGGPHAEVAALAAAGALARGAQMSVTLEPCAHHGRTPP 81 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---IVDRMMESEGKIFLHAYLTR 144 C IIE G+ RV V + DPD RV GRG+Q L G+ + R M + L YL+ Sbjct: 82 CVDAIIEAGVARVEVGLIDPDPRVRGRGIQALQAAGVEVRLAPRAMRARLADDLAPYLSH 141 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 ++ R + KIA S D + S IT ++ H LRA+ DAI+VG GT D Sbjct: 142 RLRGRPFVVGKIACSLDGAVADRWGQSKWITQEAARELGHRLRAEVDAIIVGRGTFERDR 201 Query: 205 PELTCRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 P+LT R G L P+R++ + L P V ++ P LA Sbjct: 202 PQLTARPGGRLARRQPVRVVAS------------RRPLDVPEGFVVASESPGALLAAGAA 249 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 RG +LVEGG + +++ LVD +++ + I++G+ Sbjct: 250 ---------------------RGWVEVLVEGGPTLLGAYLAEGLVDELLVAIAPILLGD 287 >gi|94986602|ref|YP_594535.1| pyrimidine reductase, riboflavin biosynthesis [Lawsonia intracellularis PHE/MN1-00] gi|94730851|emb|CAJ54213.1| Pyrimidine reductase, riboflavin biosynthesis [Lawsonia intracellularis PHE/MN1-00] Length = 382 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 98/335 (29%), Positives = 163/335 (48%), Gaps = 22/335 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + ++ + RW T+ NP V +++++G ++ G + G PHAEV + +A Sbjct: 11 YAMKYAISIAEKGRWD---TAPNPVVGSVLIQNGKIVAEGFHSLYGGPHAEVLCINDAKN 67 Query: 66 EA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + T TLEPC+HYG++PPC + II+ I+ V++ DP SG G+ L+ Sbjct: 68 KHINLSDCTLITTLEPCNHYGKTPPCTKAIIDNNIKHVIIGTKDPTTLASG-GVHTLTSA 126 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E E + + ++T Q R +I LK+A + D I + S I+ +S+ Sbjct: 127 GITVEVGILEKECQALIADFITWQNTSRPYILLKLATTLDGKIATSTGHSKWISSEVSRQ 186 Query: 182 QVHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSK 235 +VH LR AIL+G T+ D+P+LTCR N P+ II+ D Sbjct: 187 KVHKLRENVGKVGGAILIGGNTLKLDNPQLTCRNNNNNNKIQQPLAIIITSTLPEQQDIY 246 Query: 236 IIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--CRDLKKLLT-----ILVGRGV 287 + + +I T ++ A RKK + I+ DL +LT I +G Sbjct: 247 LFNSRPTETIIYTTPQSGSTQQATTLRKKGVKIVTLKNWSPDLSAILTDITEHIRSTQGC 306 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +L EGG + S + + LVD + +Y S ++G+ Sbjct: 307 LYMLCEGGGKLGSSLLKANLVDELHIYLSPKILGD 341 >gi|326426566|gb|EGD72136.1| riboflavin biosynthesis protein RibA [Salpingoeca sp. ATCC 50818] Length = 1091 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 99/318 (31%), Positives = 149/318 (46%), Gaps = 62/318 (19%) Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPC H GR+ PC Q +++ G+ R V+ V DPD RVS RGL +L +G+ + Sbjct: 715 GATAYVTLEPCHHQGRTGPCDQALVQAGVARTVIAVTDPDERVSARGLAFLRSRGVEVAT 774 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + +E + L YL ++ R +K A+S D + S ITG +++ + H +R Sbjct: 775 GVCGAEAEALLAPYLHQRRTGRPLCVIKTAISIDGRVACKDATSKWITGPLARARAHKMR 834 Query: 188 AQSDAILVGIGTVLADDPELTCRL----------------NGLQEHSP------------ 219 A+S A+L GIGT LAD+P L RL SP Sbjct: 835 AESQAVLCGIGTALADNPTLNVRLALASLPPGERAAFAPAMHAASPSPVTVAGAGAHFGR 894 Query: 220 ----MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCD--- 271 +R++LD +L + +++ T+ +AP I+ T D AL + + + D Sbjct: 895 GMPLVRVVLDARGRL-FEGRLLDTS-IAPTIVYTSRDCSAQALKTWAAHGVEAVVVDTAC 952 Query: 272 -------CR----------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 CR DL ++L L RGV +LVEGGA V SF+ L Sbjct: 953 ASGYAGACRGVDTRVGGDAAAPVLLDLMQVLRDLAKRGVLQVLVEGGAQVHSSFVQQGLG 1012 Query: 309 DSIILYRSQIVIGEGGIP 326 D + ++ ++G +P Sbjct: 1013 DQLAVFVGPKLLGGTAVP 1030 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/60 (40%), Positives = 34/60 (56%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D FM AL +R NP V C++V+DG VIG G G PHAE++A+ +A Sbjct: 577 AAVDELFMRRALSLARLGRVSAPPNPWVGCVLVRDGHVIGEGYHRRAGMPHAEIEAMADA 636 >gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM 4136] Length = 354 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 110/359 (30%), Positives = 169/359 (47%), Gaps = 36/359 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D ++M AL +R +GLTS NP+V ++V +G +IG+G G PHAEV+AL A Sbjct: 6 DEKWMRLALAEARRGIGLTSPNPAVGAVLVNEGRLIGQGWHHRVGQPHAEVEALRNAEAN 65 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G E RGATAYVTLEPCS +GR+ C + + G+ RVV DP+ +G + L + Sbjct: 66 GHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLLQE 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ ++ E + L + ++ K S D + S IT +S+ Sbjct: 126 AGIAVLSGVLREECEEVLRPFAKWITTGLPYVVAKAGQSLDGRLTRPPGESQWITSEVSR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIK 238 LR QSDAIL+G T+ D+P LT R + + E P R+++ L + + Sbjct: 186 AHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPEGKIQPWRVVVTRGGDLPRGANLF- 244 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ND+ F+++ + + C ++L L RG+TSLL+E G + Sbjct: 245 ------------NDE------FKERTLVLEGERC--FPEILQELAARGITSLLLESGGNL 284 Query: 299 AHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + VD + Y + + G GG+ L G R + GSDVC+ Sbjct: 285 LGQAFAAGAVDEVCWYIAPRICGGGTMAVGGLDFAL--GAKSVELEKARVEVLGSDVCV 341 >gi|46579612|ref|YP_010420.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. Hildenborough] gi|46449027|gb|AAS95679.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. Hildenborough] gi|311233416|gb|ADP86270.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris RCH1] Length = 377 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 108/332 (32%), Positives = 164/332 (49%), Gaps = 23/332 (6%) Query: 10 FMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 FM A+ + RW+ + NP+V ++V+DG V RG G PHAEV+ L +A Sbjct: 8 FMREAIALAERGRWYA---APNPTVGAVLVRDGEVAARGWHTGYGKPHAEVECLRDAASK 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + T VTLEPC+H+G++PPC+ I+E GI RVVV + DP+ SG G ++L G Sbjct: 65 GVDPAHCTLVVTLEPCNHHGKTPPCSHAIVEAGITRVVVGLADPNPVASG-GAEYLRAHG 123 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + VD + E E + +LT ++ ++ LK+A + D I S I+G ++ Sbjct: 124 VTVDMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGAEARAA 183 Query: 183 VHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 VH LRA+ A+LVG T+ DDP+LT R+ L PM ++ H I Sbjct: 184 VHELRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHVPHHDALPRIF 243 Query: 239 TALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-----DLKKLLTIL-VGRGVTSL 290 ++ T++ A A R + I+ DL+ LT L GV + Sbjct: 244 RERPGQCVVWTDSTGAGTEAADALRTSGVCIMALPLTPSGRLDLRAGLTRLRADHGVEHV 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 L EGG +A S + + LV L+ + +IG+ Sbjct: 304 LCEGGGKLALSLLEAGLVGEFHLHMAPKIIGD 335 >gi|242347654|gb|ACS92631.1| conserved hypothetical protein [Triticum aestivum] Length = 396 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 28/338 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG+ Sbjct: 51 MDAHYMRRCVDLARTAAGHTSPNPMVGCVIVREGEVVGEGFHPKAGQPHAEVFALRDAGD 110 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I+ I+ VVV + DP+ V+ +G++ L GI Sbjct: 111 LAENATAYVSLEPCNHYGRTPPCTEALIKAKIKEVVVGMTDPNPIVASKGIEKLRNAGID 170 Query: 126 VDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183 V +E + L+ AY+ R + ++ TL+ +S + + I G G+ G+ S+ Sbjct: 171 VRVGVEEALCLRLNEAYIHRMLTGKAFATLRTTLSMNGIVINQIGSGADQPGGYYSQ--- 227 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKIIKTA 240 L + D G V++ D L QE P+ II+ L + Sbjct: 228 --LAKEYD------GVVISSDMAKATTLPISQEAGAKQPLYIIIAQGEGSKLHIPFLDEE 279 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG- 295 + I++ D PV A +++ D +L +L IL RG+ S+LV+ GG Sbjct: 280 SASNAIVLA--DSPV---AVEPSGVSVSVLDEMNLDSILRILADRGLCSVLVDFRDAGGA 334 Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 A++ F +LV +++ S + + G PS L G Sbjct: 335 LASLLKDFQEDKLVQKVLVELSPVWMVSPG-PSDLAFG 371 >gi|296537269|ref|ZP_06899158.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] gi|296262404|gb|EFH09140.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] Length = 225 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/226 (42%), Positives = 126/226 (55%), Gaps = 3/226 (1%) Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 G TA GG PHAE +AL+ AG ARGATAYVTLEPC H+GR+PPC +I G+ RVVV + Sbjct: 1 GWTAPGGRPHAETEALKRAGAAARGATAYVTLEPCCHWGRTPPCTDALIAAGVARVVVAM 60 Query: 105 DDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 DPD RV G G++ L GI V ++E E + + R +TLK+A + D Sbjct: 61 RDPDPRVDGGGIEQLRAAGIAVSTGLLEDEARAINAGFTKRLTRNLPLLTLKLASTLDGR 120 Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223 I S ITG ++ H LR DA+LVG GT LADDPEL+CR+ G +R++ Sbjct: 121 IATRSGESQWITGAPARRLAHALRGTHDAVLVGSGTALADDPELSCRIPGFAPVPTVRVV 180 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINII 268 D +LS +++++ PV I T P LA R I+ Sbjct: 181 ADARLRLSPGARMLREG-GGPVWIATRPGHPDALLAPLRAAGAEIV 225 >gi|58698891|ref|ZP_00373757.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|58534587|gb|EAL58720.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] Length = 167 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 95/153 (62%), Gaps = 1/153 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 ++ +M+ E K + T + R I K+A Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVAT 155 >gi|317124749|ref|YP_004098861.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Intrasporangium calvum DSM 43043] gi|315588837|gb|ADU48134.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Intrasporangium calvum DSM 43043] Length = 378 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 109/324 (33%), Positives = 155/324 (47%), Gaps = 7/324 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60 P S DA M A+ + NP V C+IV + G V+ G G PHAE AL Sbjct: 8 PQSPVDAARMLRAIALAE-RSPWPDPNPRVGCVIVDRAGEVVAEGWHRGAGTPHAEAAAL 66 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARG TAYV+LEPC+H GR+ PC+ ++E G+ RVV DP+ SG G L Sbjct: 67 ALAGERARGGTAYVSLEPCAHRGRTGPCSDALVEAGVARVVYAQADPNAEASG-GADVLR 125 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ IV ++ E ++ R +T K A + D A S ITG + Sbjct: 126 AAGVQIVGGLLADEAAALNDRWVRTITLGRPLVTWKFAATLDGRSAAADGSSQWITGPAA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA DAI+ G GTVLADDP LT R + + + R + + + + Sbjct: 186 RADVHALRATRDAIVAGTGTVLADDPRLTVRPDTVVAPTDRRTGPEVAPGAAAAPGPVGS 245 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L ++V P A +++ RD+ +L L RGV + +EGG +A Sbjct: 246 QPLR--VVVGLRAVPPSARVHAGPG-EVLHLRTRDVHAVLAALWSRGVREVWLEGGPTLA 302 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 +F + LVD + Y + ++G G Sbjct: 303 AAFWAADLVDDVYAYLAPALLGAG 326 >gi|308177749|ref|YP_003917155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Arthrobacter arilaitensis Re117] gi|307745212|emb|CBT76184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Arthrobacter arilaitensis Re117] Length = 346 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 107/309 (34%), Positives = 148/309 (47%), Gaps = 36/309 (11%) Query: 23 GLTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE----EARGATAYVTLE 77 G NP V AC++ +G +I G G PHAEV AL G+ +AR T VTLE Sbjct: 21 GYRGANPLVGACVLDAEGNIIATGFHLGAGHPHAEVDALRRLGKMSPAKARELTMVVTLE 80 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PC+H GR+ PCA+ I E GI +V V PD + G +L +GI ++ S+ Sbjct: 81 PCNHTGRTGPCARAIAEAGIGQVHYAV--PDNTAASGGADYLRSQGIQATQLECSDAARN 138 Query: 138 LHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L+ + + E R IT+KIA S D I S IT S+N H LR++ DAI+VG Sbjct: 139 LNQRWFIAKAEGRPFITVKIAQSLDGRINAPDGTSKWITSEASRNHAHGLRSRVDAIMVG 198 Query: 197 IGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 T + DDP LT R L E P R+++ +L D + + + DD Sbjct: 199 TNTAVIDDPRLTARTPTGELHERQPFRLVMGER-ELPND------------LALMQGDDW 245 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L RD+ + + G LLVEGGA VA +FI + L D I Y Sbjct: 246 EQIL-------------TRDVHEAIVRANELGFGHLLVEGGATVASAFIAADLADEIYCY 292 Query: 315 RSQIVIGEG 323 ++ ++IG G Sbjct: 293 QAPLMIGAG 301 >gi|167572878|ref|ZP_02365752.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis C6786] Length = 357 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 147/311 (47%), Gaps = 18/311 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I V+G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHGEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++ + Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ME+E + + +R R K+ +S D + + T S++ V RA+ Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S +L G P R NG +P ++ F +LD+ T + P + + Sbjct: 181 SSVVLAPHGV-----PFPAAR-NGA---APGYVVRSRDFA-ALDASPATTEGV-PTLALH 229 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D V A + D L L L +GV L ++ A+ + Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289 Query: 304 NSRLVDSIILY 314 L D ++LY Sbjct: 290 EGNLADELLLY 300 >gi|317504450|ref|ZP_07962429.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606] gi|315664438|gb|EFV04126.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606] Length = 318 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 104/316 (32%), Positives = 149/316 (47%), Gaps = 42/316 (13%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR----GATAYVTLEPCSHYG 83 NP V +IV +IG G G HAEV A E AT YV+LEPCSHYG Sbjct: 24 NPMVGAVIVARNRIIGEGYHVRFGEEHAEVNAFASVKPEDEMLLNEATIYVSLEPCSHYG 83 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA II GI+R V DP +V GRG+Q + GI ++ +ME E H ++ Sbjct: 84 KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVIVGVMEKECLALNHRFI 143 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 T + R +I LK A + + I G G + ++ ++ VH LRA++DAILVG T L+ Sbjct: 144 TFNAKHRPYILLKWAQTLNGFISRKG-GPLQLSTPKTQMLVHQLRAENDAILVGHTTFLS 202 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D P L R Q +P RI+L P A R Sbjct: 203 DHPRLDVRQWSGQ--NPERIVLSPTMS---------------------------AQNARP 233 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 N + + K++ L SL+VEGG +FI+ L D I + + ++I + Sbjct: 234 SNWTV----AATIDKVIAHLYATKKQSLVVEGGRMTLQAFIDRGLWDEIRIETAPVLITD 289 Query: 323 GGIPSPL--EEGYLEK 336 G+P+P + ++EK Sbjct: 290 -GVPAPHIPSDAHIEK 304 >gi|83859882|ref|ZP_00953402.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] gi|83852241|gb|EAP90095.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] Length = 195 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 68/139 (48%), Positives = 89/139 (64%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 PV++ D R+M AL + +G T+ NPSV C+IV+DG +IG TA GG PHAE QALE Sbjct: 5 PVTAEDLRYMDTALALAYARLGQTAPNPSVGCIIVRDGRIIGAAATAPGGRPHAEPQALE 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG A GAT YVTLEPC+HYG++PPCA+ +I VV+ DP V+GRG+ L+ Sbjct: 65 QAGARAEGATVYVTLEPCAHYGKTPPCAEALIAAHPAEVVIACRDPFEHVAGRGMTMLAD 124 Query: 122 KGIIVDRMMESEGKIFLHA 140 GI V + I L+A Sbjct: 125 AGIAVLEGVREADAIALNA 143 >gi|300934515|ref|ZP_07149771.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium resistens DSM 45100] Length = 320 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 113/342 (33%), Positives = 161/342 (47%), Gaps = 56/342 (16%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 ++ DG V GRG T G HAE+ AL+EAG ARG A VTLEPC+H GR+ PC Q ++ Sbjct: 2 ILDSDGEVAGRGATEPAGGRHAEIVALDEAGTRARGGRAIVTLEPCNHTGRTGPCTQALL 61 Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-------------- 139 GI RV DP SG G L+ G+ E G H Sbjct: 62 AAGIVRVDYLFADPFELASG-GANSLASAGV------EVHGPYLPHPSQAAPWTPVQGVE 114 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A+L KR ++ LK+A + D + + S ITG ++ H RAQ DAILVG GT Sbjct: 115 AWLRGVKNKRPYVILKLAATMDGRVAASDGSSQWITGAAARGHAHARRAQVDAILVGTGT 174 Query: 200 VLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 V ADDP+LT R + Q E P+R+++ + + D+ ++ Sbjct: 175 VEADDPKLTARDDSGQPLPKELQPLRVVMG-NRSIPEDAAVM------------------ 215 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ D+ ++L L RGV ++LVEGG +VA +F+N+ +VD I Y Sbjct: 216 ------QQPGETFLARSHDVHQVLAQLHSRGVVTVLVEGGPSVAAAFMNAGVVDEINYYC 269 Query: 316 SQIVIGEGGIP---SPLEEGYLEKNFMCVRR---DYFGSDVC 351 + V+G G S LE G ++ R G+D+C Sbjct: 270 APAVLGAGFNAMDGSTLEMGRTIQDLQRFRPREIQILGNDIC 311 >gi|304570589|ref|YP_388926.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 373 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 108/355 (30%), Positives = 175/355 (49%), Gaps = 34/355 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60 P SSF ++ A + RW TS NP V ++VKDG + RG TAYG PHAE++ L Sbjct: 6 PFSSFMLEAVALAEK-GRW---ATSPNPCVGAVLVKDGQTVARGWHTAYGK-PHAEIECL 60 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +A G T VTLEPC+H G++PPC+ +++ GIR VVV + DP+ G G Sbjct: 61 RDAARRGVNPAECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQG-GAN 119 Query: 118 WLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 +L + G+ V+ + E + + ++T + + +K+A + D I S I+G Sbjct: 120 FLRENGVTVETGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISG 179 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS----- 231 S+ +VH LR +DA++VG GT AD+P+LTCRL G++ P+ +++ + Sbjct: 180 EESRRRVHELRRHADAVIVGGGTFRADNPQLTCRLEGIRRQ-PLAVVVTSQLPDAGAPMH 238 Query: 232 -LDSKIIKTALLAP-VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----R 285 L + +T P + +E D + AL R ++ +C+ L T L G Sbjct: 239 LLQQRPHETIFWTPRAVAASEKADALRALGVRVTGLDR---NCKGRLDLHTALAGLRSEY 295 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEG 332 L EGG +A S + + + L+ + ++ +G PS +E+ Sbjct: 296 DCYHTLCEGGGMLALSMLEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQA 350 >gi|91216505|ref|ZP_01253471.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC 700755] gi|91185299|gb|EAS71676.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC 700755] Length = 347 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 103/336 (30%), Positives = 169/336 (50%), Gaps = 23/336 (6%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPC 79 +G T NP V C+IV + +IG G G HAEV+A+ +++ + + YVTLEPC Sbjct: 19 LGTTYPNPLVGCVIVYNDRIIGEGWHIKAGDDHAEVRAINSVKDQSLLKKSILYVTLEPC 78 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGIIVDRMMESEGKIFL 138 SHYG++PPC+ IIE I ++V+ DP +V+G G+ + L+ K + + E + Sbjct: 79 SHYGKTPPCSDLIIEKKIPKIVIGTLDPFAKVAGMGIKKLLAAKRSVTVGVCEEACEELN 138 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS---VPITGFISKNQVHLLRAQSDAILV 195 + T ++R + LK A + I IT S+ VH R++ AILV Sbjct: 139 KRFFTFHRKQRPFVILKWAETTHGFIAPTEQQKGDIFWITNAYSQQLVHKWRSEEQAILV 198 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 G T L D+P+L R + +P R+++D KL ++ T+ P II D Sbjct: 199 GTQTALKDNPKLNVR--HYEGKNPTRVVIDRALKLPSSLALVDTS--QPTIIF---HDHK 251 Query: 256 LALAFRKKNINIIYCDC-RDL-KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 L A + N++ D R+L +++L+ L +G+ S+++EGGA SFI+ L D Sbjct: 252 LTKA-SQYNLSFEALDFERNLPEQILSSLYEKGLQSVIIEGGAMTIQSFIDHELWDE--- 307 Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +++ IG+ I L+ L++ R ++ D Sbjct: 308 --ARVFIGKNEIKDGLKGPVLKQK--ATRNEWLEGD 339 >gi|31792603|ref|NP_855096.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis AF2122/97] gi|121637339|ref|YP_977562.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426746|ref|ZP_03424665.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T92] gi|224989814|ref|YP_002644501.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260186348|ref|ZP_05763822.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis CPHL_A] gi|260200464|ref|ZP_05767955.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis T46] gi|289442854|ref|ZP_06432598.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis T46] gi|289447005|ref|ZP_06436749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CPHL_A] gi|289749967|ref|ZP_06509345.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis T92] gi|31618192|emb|CAD94305.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) [Mycobacterium bovis AF2122/97] gi|121492986|emb|CAL71457.1| Probable bifunctional riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772927|dbj|BAH25733.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289415773|gb|EFD13013.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis T46] gi|289419963|gb|EFD17164.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CPHL_A] gi|289690554|gb|EFD57983.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis T92] Length = 339 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 108/324 (33%), Positives = 153/324 (47%), Gaps = 34/324 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 227 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++V + D P A + + + ++L L R T +L+EGG Sbjct: 228 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + ++ I+ Y + I++G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300 >gi|260204674|ref|ZP_05772165.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis K85] gi|289574078|ref|ZP_06454305.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis K85] gi|289538509|gb|EFD43087.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis K85] Length = 339 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 156/324 (48%), Gaps = 34/324 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ L +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKRDILP-EARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +I E + + AL+ R T +L+EGG Sbjct: 243 NDEARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + ++ I+ Y + I++G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300 >gi|108804202|ref|YP_644139.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rubrobacter xylanophilus DSM 9941] gi|108765445|gb|ABG04327.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rubrobacter xylanophilus DSM 9941] Length = 369 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 110/295 (37%), Positives = 157/295 (53%), Gaps = 30/295 (10%) Query: 51 GCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPD 108 G HAE AL AG ARGAT YVTLEPC+H+ R+ PPCA+ ++ GIRR+VV DP+ Sbjct: 41 GEEHAEAMALRRAGAAARGATMYVTLEPCNHHLRTPGPPCAEAVLRAGIRRLVVGHADPN 100 Query: 109 VRVSGRGLQWLSQKGIIV----DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 RV+GR L+ L + G+ V D + E + + F A R + LK+AV+ D I Sbjct: 101 PRVNGRSLRRLREAGVEVEVLDDPVFERQNERFFWAMR----RGRPFVHLKLAVTLDGRI 156 Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRI 222 AG S +TG ++ + H LRA++ A+LVG GT ADDP LT R GL E P +R Sbjct: 157 AAAGGDSRWVTGPEARRRAHALRAEAGAVLVGAGTARADDPLLTPR--GLDEEPPRVLRA 214 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCR-------- 273 +LDP L S+++ TA P+++ E P R++ + + Sbjct: 215 VLDPRLTLPEASRLVSTAPEWPLVVFCAEGASP-----RRRRRLEAAGAEVEAVPAAGDG 269 Query: 274 --DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 DL +L L RG + +LVEGG A F+ LV+ + L+ + + G G+P Sbjct: 270 GLDLGAVLERLRLRGASGVLVEGGGQTARRFVAGGLVNKMTLFYAPRLAGADGVP 324 >gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group] gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group] Length = 622 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 171/358 (47%), Gaps = 26/358 (7%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-E 133 LEP YG S + +++ GI RVVV + P + G+ +Q L +GI VD + E Sbjct: 129 NLEPGDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLH 187 Query: 134 GKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 K+F A L R + LK A++ D I + + ++G S+ +V Sbjct: 188 SKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRV 247 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR +SDAI+VG TV DDP LT R ++ H P+RI++ L ++ + Sbjct: 248 FELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAY 305 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ L K + ++ D + + +++ RG S+L E G +A S I Sbjct: 306 TIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAI 365 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 ++ ++ + + + +IG P+P+ G L N M D DV E I +++ + Sbjct: 366 SASVIHKVYAFLAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 419 >gi|46204084|ref|ZP_00209252.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 320 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 89/261 (34%), Positives = 135/261 (51%), Gaps = 11/261 (4%) Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GATA VTLEPC+H GR+ PCA ++ G+ VV+ VDDP+ +G G L G Sbjct: 27 GVDVAGATAVVTLEPCAHTGRTGPCADALVAAGVAEVVLAVDDPNPVATG-GAHRLRAAG 85 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V R + +EG+ L +LT ++TLK A + D + S ITG ++ Sbjct: 86 VRVVRGLRAAEGEELLRVWLTAVRRGTPYVTLKTATTLDGYVAAQDGTSRWITGPAAREH 145 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +RA+ DAI+VG GT+LADDPELT R+ G H P + + A Sbjct: 146 AHRVRAEVDAIVVGTGTLLADDPELTARVRG---HGPSH------DAAHDAASAARLAEH 196 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P+ +V A R + +++ RD+ ++L L R V +LVEGG +A +F Sbjct: 197 QPLRVVVGLRGIPPAARVRGEGSELVHVLTRDVGEVLERLAEREVRHVLVEGGPTLATAF 256 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + + VD + Y + +++G G Sbjct: 257 LAAGAVDELHAYVAPVLLGNG 277 >gi|237785569|ref|YP_002906274.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase [Corynebacterium kroppenstedtii DSM 44385] gi|237758481|gb|ACR17731.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase [Corynebacterium kroppenstedtii DSM 44385] Length = 357 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 103/306 (33%), Positives = 151/306 (49%), Gaps = 32/306 (10%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ DG ++G+G T G PHAEV A+ +AG+ GATA VTLEPC+H Sbjct: 36 GTTSPNPPVGAVIIDADGRIVGQGHTQPAGGPHAEVMAVRDAGDATAGATAIVTLEPCAH 95 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLH 139 GR+ PC ++ GI VV V DP+ G G + L++KG+ V ++ + L Sbjct: 96 TGRTGPCTDVLLSAGISTVVYAVPDPNPIAHG-GHEVLAEKGLTVIGGFHADEVRRGALR 154 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 ++L R R+ +TLK+A + D + S IT ++N VH RA DA++VG GT Sbjct: 155 SWLHRIGTGRAMVTLKVAATLDGRVAAPDGTSQWITSADARNYVHRDRATRDALIVGTGT 214 Query: 200 VLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 V+AD+P LT R L H P +I+ PV Sbjct: 215 VIADNPRLTARKPDGTLYAHQPDHVIV--------------------------GSRPVPE 248 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + + D DL ++ L +G LL+EGG +A + + +VD I Y + Sbjct: 249 EAKIFAHARSWHFDTHDLSHVIQELTQQGYVDLLIEGGPMLASAALEQGVVDQIHWYVAP 308 Query: 318 IVIGEG 323 ++G G Sbjct: 309 SILGSG 314 >gi|119716673|ref|YP_923638.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nocardioides sp. JS614] gi|119537334|gb|ABL81951.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nocardioides sp. JS614] Length = 345 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 146/316 (46%), Gaps = 43/316 (13%) Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+++ +DG + G G HAE AL AG ARGATA VTLEPC+H GR+ Sbjct: 18 NPRVGCVLLDEDGRTVAEGHHRGAGTAHAEADALARAGVRARGATAVVTLEPCNHTGRTG 77 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145 PCAQ +I G+RRVV DP+ +G G L G+ V+ ++ E + + Sbjct: 78 PCAQALIGAGVRRVVFAQPDPNPAAAG-GADTLRAAGVDVESGLLHVESGLLNRFWAFGL 136 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 R +T K A + D A S ++ ++ H LRA+ D +LVG T+ DDP Sbjct: 137 AHGRPFVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHRLRARCDVMLVGTNTIEVDDP 196 Query: 206 ELTCRLNGLQ--EHSPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R + EH P+R + LDP ++ D + A Sbjct: 197 LLTVRDEHDRPLEHQPLRAVMGERDLDPGRRV-FDQRPANGA------------------ 237 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ RD +K L L + +EGG +A +F+ + LVD I+ Y + + Sbjct: 238 -------ESVHLRTRDPEKALAELAALDRQHVFLEGGPTLAAAFLKAGLVDEIVAYVAPM 290 Query: 319 VIGEG-------GIPS 327 ++G G GIP+ Sbjct: 291 LLGSGRAAVGDLGIPT 306 >gi|270339625|ref|ZP_06005479.2| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM 17361] gi|270334334|gb|EFA45120.1| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM 17361] Length = 365 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/337 (32%), Positives = 152/337 (45%), Gaps = 56/337 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M L+ +R NP V +IV +DG +IG G G HAEV A Sbjct: 29 DERYMRRCLQLARNGWQNAKPNPMVGAVIVSRDGRIIGEGYHVRCGEGHAEVNAFASVRP 88 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E + +T YV+LEPCSH+G++PPCA I++ G+RRVV DP +V GRG+ + + Sbjct: 89 EDEVLLKESTVYVSLEPCSHWGKTPPCADLIVKKGVRRVVCGCIDPFSKVQGRGVAHIRK 148 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA------GCG---- 170 GI V ++E E ++T EKR +I LK A +++ I A G G Sbjct: 149 AGIEVTVGVLEQECLELNRRFITFNTEKRPYILLKWAQTENGKIASASVTPAVGSGVSTV 208 Query: 171 ----SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226 + ++ +K VH LRA++DAILVG TV AD P+L R P R++L Sbjct: 209 MTVAPLVLSSAFTKMLVHKLRAENDAILVGHETVRADHPQLNTR--SWSGRDPERLVL-- 264 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +D P F D+ KLL L Sbjct: 265 --------------------ARCTDDVPQWFKCF------------DDMDKLLQYLYNNR 292 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 SL+VEGGA SF+ L D I + + + EG Sbjct: 293 RQSLIVEGGAVTLRSFLERGLWDEIRVETAPWSVAEG 329 >gi|283851293|ref|ZP_06368575.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B] gi|283573243|gb|EFC21221.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B] Length = 383 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 79/211 (37%), Positives = 125/211 (59%), Gaps = 5/211 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L +A Sbjct: 4 DADFMARALVLAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLHDAEKK 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GAT YVTLEPC+H+G++PPC++ +++ + RVVV DP+ V+G G + L Q G Sbjct: 64 GVDPAGATMYVTLEPCNHFGKTPPCSRTLLDARVGRVVVGCLDPN-PVAGGGAELLRQGG 122 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V ++ E + + ++ + R +T+K+A++ D I S ++G S+ + Sbjct: 123 VDVTVGVLALECRDAIADFVVWKTLGRPFVTVKLAMTLDGRIASRTGDSGWVSGEASRAR 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 VH +RA A+LVG GT+ AD+P LT RL+G Sbjct: 183 VHAMRAACQAVLVGGGTLAADNPRLTHRLDG 213 >gi|329946974|ref|ZP_08294386.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon 170 str. F0386] gi|328526785|gb|EGF53798.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon 170 str. F0386] Length = 400 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/301 (32%), Positives = 143/301 (47%), Gaps = 28/301 (9%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYG 83 NP V C+I+ DG V+ G G HAEV AL AG A+G TA VTLEPC H G Sbjct: 43 NPRVGCVILSADGDVLAEGHHRGAGTAHAEVDALTNLAAAGASAQGTTAVVTLEPCDHEG 102 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-AYL 142 R+ PC Q ++ G+ V+ DDP + G G L G+ V R + S+ L+ + Sbjct: 103 RTGPCVQALLAAGVAEVIYAQDDPTEQAGG-GAATLEAAGVRVRRGLCSQDAARLNRPWF 161 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +T K+A + D I A S IT ++ H LR Q DA++VG GT LA Sbjct: 162 LAVTRGRPMVTWKLAATLDGRIAAADGTSRWITPAAARRDAHHLRRQCDAVMVGTGTALA 221 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 DDP LT R + E +P L ++ + L P V +D Sbjct: 222 DDPALTVR-DETGEPAPT--------HLQPLRVVVGSRRLPPASRVLADD---------- 262 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + + D + +L +L R + +L+EGG +A +F+ + +VD ++ Y + ++G Sbjct: 263 ---HYLLLPDHDPRTVLAVLAEREIRHVLLEGGPTLATAFLRAGVVDEVVAYTAPALLGA 319 Query: 323 G 323 G Sbjct: 320 G 320 >gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis] gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis] Length = 600 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 179/368 (48%), Gaps = 21/368 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA F+ A + G TS +P+ C+I G V G G G AEVQA+E AGE Sbjct: 37 DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ++GATAY+ LEP +G + +++ GI RVVV + P + G + L G+ Sbjct: 97 WSKGATAYLNLEPGDCHGDHTAVSS-LVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155 Query: 126 VD--------RMMESEGK--IFLHAYLTRQVEKRSHIT-LKIAVSQDNMIGMAGCGSVPI 174 V+ +++E K + ++A L + R + LK A++ D I + + + Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVLKYAMTLDGKIAASSGHAAWV 215 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + S+N+V LR++SDAI+VG TV D+P LT R G E+ PMRI++ L ++ Sbjct: 216 SSRKSRNRVFELRSRSDAIIVGGNTVRRDNPRLTARHGG--EYMPMRIVMSQTLDLPEEA 273 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + ++ +++ K + ++ + + ++++ RG S+L E Sbjct: 274 NLWDVCDVSTIVVTQRGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWEC 333 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353 G +A S I++ ++ + + + +IG PSP+ E G +E M D DVC E Sbjct: 334 GGTLAASAISAGVIHKVFAFVAPKIIGGKNAPSPVGELGMVE---MTQALDLV--DVCYE 388 Query: 354 YIGKNLCL 361 +G ++ + Sbjct: 389 QVGPDMLI 396 >gi|242042489|ref|XP_002468639.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor] gi|241922493|gb|EER95637.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor] Length = 396 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 100/317 (31%), Positives = 161/317 (50%), Gaps = 23/317 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA++M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 51 LDAQYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 110 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 111 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIN 170 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183 V + E+ + AY+ R + ++ TL+ +S + ++ G G+ G+ S+ Sbjct: 171 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIVTNQIGKGADQSGGYYSQ--- 227 Query: 184 HLLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L + D ++ I + LA L R G + P+ II+ L + Sbjct: 228 --LMKEYDGVI--ISSDLAKMSSLPLSREAGANQ--PLYIIIAQGENSRLHIPSLSEEHA 281 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGA 296 + VI++ D PV A + + DL+ +L +L RG+ S+LV E A Sbjct: 282 SKVIVLA--DSPVTAA---PAGVEVAVLRQIDLESILQLLAQRGLCSVLVDFREATESFA 336 Query: 297 AVAHSFINSRLVDSIIL 313 ++ + F +LV +++ Sbjct: 337 SLLNDFQEDKLVQKVVV 353 >gi|120602900|ref|YP_967300.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris DP4] gi|120563129|gb|ABM28873.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio vulgaris DP4] Length = 377 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 170/345 (49%), Gaps = 30/345 (8%) Query: 10 FMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 FM A+ + RW+ + NP+V ++V+DG V+ RG G PHAEV+ L +A Sbjct: 8 FMREAIALAERGRWYA---APNPTVGAVLVRDGEVVARGWHTGYGKPHAEVECLRDAASK 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + T VTLEPC+H+G++PPC+ I++ GI RVVV + DP+ SG G ++L G Sbjct: 65 GVDPAHCTLVVTLEPCNHHGKTPPCSHAIVKAGITRVVVGLADPNPVASG-GAEYLRAHG 123 Query: 124 IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + VD + E E + +LT ++ ++ LK+A + D I S I+G ++ Sbjct: 124 VTVDMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGEEARAT 183 Query: 183 VHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH----------F 228 VH LRA+ A+LVG T+ DDP+LT R+ L PM ++ H F Sbjct: 184 VHELRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHLPHHDALPRIF 243 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGV 287 + +I T + TE D + + + DL+ L+ + GV Sbjct: 244 RERPGQCVIWTDAIG---AGTEAADTLRTSGVCVMALPLTPAGRLDLRAGLVRLRDDHGV 300 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 +L EGG +A S + + LV L+ + +IG+ +PL +G Sbjct: 301 EHVLCEGGGKLALSLLEAGLVGEFHLHMAPKIIGDAEA-APLFDG 344 >gi|215430296|ref|ZP_03428215.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis EAS054] gi|289753491|ref|ZP_06512869.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054] gi|289694078|gb|EFD61507.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054] Length = 339 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/324 (32%), Positives = 156/324 (48%), Gaps = 34/324 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q ++T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPYVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +I E + + AL+ R T +L+EGG Sbjct: 243 NDEARTMMIRTHEPMEVLRALSDR--------------------------TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + ++ I+ Y + I++G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300 >gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Length = 596 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 173/368 (47%), Gaps = 21/368 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA F+ A S GLTS +P+ C+I G V G G G AE A+E AGE Sbjct: 32 DAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGE 91 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +RGATAY+ +EP +G + +++ GI RVVV + P + G ++ L GI Sbjct: 92 FSRGATAYLNMEPGDCHGDHTAVSA-LVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIE 150 Query: 126 VDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 V+ + E E K+ A + R + LK A++ D I + + I Sbjct: 151 VNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWI 210 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L + Sbjct: 211 SSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPEKA 268 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + ++ +++ K + ++ D + ++++ RG S+L E Sbjct: 269 NLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWEC 328 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353 G +A S I+S ++ ++ + + +IG PSP+ + G +E M + DVC E Sbjct: 329 GGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVE---MTQALNLI--DVCYE 383 Query: 354 YIGKNLCL 361 +G ++ + Sbjct: 384 QVGPDMLV 391 >gi|311742370|ref|ZP_07716179.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM 15272] gi|311313998|gb|EFQ83906.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM 15272] Length = 344 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/331 (33%), Positives = 163/331 (49%), Gaps = 42/331 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 S + R M AL +R G NP+V C+++ G I G T GG HAEV+AL Sbjct: 2 ASEHEIRAMRRALDLAR-DRGSCLPNPTVGCVLLDVHGEEISAGTTVPGGA-HAEVEALT 59 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATA VTLEPC+H+G + PC + ++ G+ RVVV DP+ +G G++ L + Sbjct: 60 AAGERARGATAVVTLEPCAHHGNTGPCVEALVGAGVARVVVAETDPNPVAAG-GVEALRR 118 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ V+ ++ E + A+ R +T K A + D + S ITG ++ Sbjct: 119 AGLEVETGILGDEVEPLNRAWRFAVTRGRPFVTWKYAATLDGLSAAPDGSSQWITGPEAR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILD----PHFKLSL 232 V + RAQ DAI+ G G VLADDP LT R L +E P+R+++ P + Sbjct: 179 RDVQVFRAQCDAIVAGTGAVLADDPRLTVRGTDDLPVARERQPLRVVVGETTIPSYYRVF 238 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 D +AP + V RD +L+ LV R + + + Sbjct: 239 DR-------VAPTLQVP----------------------SRDPAAVLSTLVERDIRHVWL 269 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 EGG +A +F N+ L+D +I Y + ++G G Sbjct: 270 EGGPRLAGAFWNAGLIDRVIGYIAPSMLGSG 300 >gi|145295718|ref|YP_001138539.1| hypothetical protein cgR_1645 [Corynebacterium glutamicum R] gi|140845638|dbj|BAF54637.1| hypothetical protein [Corynebacterium glutamicum R] Length = 328 Score = 133 bits (335), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 114/343 (33%), Positives = 168/343 (48%), Gaps = 41/343 (11%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +I+ DG V+G G TA G PHAEV AL AG A G TA VTLEPC+H Sbjct: 19 GTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGARANGGTAVVTLEPCNH 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 YGR+ PC++ +++ GI V DP +G G +L++ G VD E L + Sbjct: 79 YGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAG--VDTHFLDERIRVLEPW 135 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L R H+TLK A + D G S ITG ++ VH R++ DAI+VG GT L Sbjct: 136 LQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHEDRSKRDAIIVGTGTAL 195 Query: 202 ADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R +GL E+ P R+++ ++ DS + + Sbjct: 196 TDNPSLTARTEDGLYENQPRRVVIGSR-EVPADSNLAR---------------------- 232 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + Y + + L++L +G +L+EGG +A + + +VD + Y + ++ Sbjct: 233 ------LGYEQYAGIPEALSVLWDKGCRDILIEGGPTLAGAALRLGIVDQVQAYVAPALL 286 Query: 321 GEGG--IPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 G G I P E + + + VR+ GSDV +E + K Sbjct: 287 GAGRSVINWPQETTMDQIMRFDTTSVRQ--LGSDVLIEMMRKE 327 >gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana] gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Length = 599 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/368 (28%), Positives = 173/368 (47%), Gaps = 21/368 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA F+ A S GLTS +P+ C+I G V G G G AE A+E AGE Sbjct: 32 DAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGE 91 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +RGATAY+ +EP +G + +++ GI RVVV + P + G ++ L GI Sbjct: 92 FSRGATAYLNMEPGDCHGDHTAVSA-LVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIE 150 Query: 126 VDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 V+ + E E K+ A + R + LK A++ D I + + I Sbjct: 151 VNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAAWI 210 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L + Sbjct: 211 SSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPEKA 268 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + ++ +++ K + ++ D + ++++ RG S+L E Sbjct: 269 NLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWEC 328 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVCLE 353 G +A S I+S ++ ++ + + +IG PSP+ + G +E M + DVC E Sbjct: 329 GGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVE---MTQALNLI--DVCYE 383 Query: 354 YIGKNLCL 361 +G ++ + Sbjct: 384 QVGPDMLV 391 >gi|78219882|gb|ABB39231.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 363 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 103/338 (30%), Positives = 167/338 (49%), Gaps = 33/338 (9%) Query: 19 RWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEA---GEEARGATAYV 74 RW TS NP V ++VKDG + RG TAYG PHAE++ L +A G T V Sbjct: 12 RW---ATSPNPCVGAVLVKDGQTVARGWHTAYGK-PHAEIECLRDAARRGVNPAECTLVV 67 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESE 133 TLEPC+H G++PPC+ +++ GIR VVV + DP+ G G +L + G+ V+ + E Sbjct: 68 TLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNPVAQG-GANFLRENGVTVETGVCRQE 126 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + + ++T + + +K+A + D I S I+G S+ +VH LR +DA+ Sbjct: 127 CEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHELRRHADAV 186 Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS------LDSKIIKTALLAP-VI 246 +VG GT AD+P+LTCRL G++ P+ +++ + L + +T P + Sbjct: 187 IVGGGTFRADNPQLTCRLEGIRRQ-PLAVVVTSQLPDAGAPMHLLQQRPHETIFWTPRAV 245 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG----RGVTSLLVEGGAAVAHSF 302 +E D + AL R ++ +C+ L T L G L EGG +A S Sbjct: 246 AASEKADALRALGVRVTGLDR---NCKGRLDLHTALAGLRSEYDCYHTLCEGGGMLALSM 302 Query: 303 INSRLVDSIILYRSQIVIG--------EGGIPSPLEEG 332 + + + L+ + ++ +G PS +E+ Sbjct: 303 LEMNVAQELELHMAPKLLADAQARPLFDGRTPSTMEQA 340 >gi|15608547|ref|NP_215925.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis H37Rv] gi|15840867|ref|NP_335904.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551] gi|148661200|ref|YP_001282723.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra] gi|148822629|ref|YP_001287383.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis F11] gi|167968448|ref|ZP_02550725.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis H37Ra] gi|215403256|ref|ZP_03415437.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis 02_1987] gi|215411054|ref|ZP_03419862.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis 94_M4241A] gi|215445596|ref|ZP_03432348.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T85] gi|218753118|ref|ZP_03531914.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis GM 1503] gi|253799541|ref|YP_003032542.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 1435] gi|254231651|ref|ZP_04924978.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis C] gi|254364292|ref|ZP_04980338.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|254550423|ref|ZP_05140870.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554800|ref|ZP_06444010.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 605] gi|289745160|ref|ZP_06504538.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987] gi|289757515|ref|ZP_06516893.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85] gi|289761568|ref|ZP_06520946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis GM 1503] gi|294994971|ref|ZP_06800662.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis 210] gi|297633965|ref|ZP_06951745.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 4207] gi|297730954|ref|ZP_06960072.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN R506] gi|298524915|ref|ZP_07012324.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis 94_M4241A] gi|313658287|ref|ZP_07815167.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN V2475] gi|2829534|sp|P71677|RIBD_MYCTU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1542917|emb|CAB02188.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) [Mycobacterium tuberculosis H37Rv] gi|13881067|gb|AAK45718.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551] gi|124600710|gb|EAY59720.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis C] gi|134149806|gb|EBA41851.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|148505352|gb|ABQ73161.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra] gi|148721156|gb|ABR05781.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis F11] gi|253321044|gb|ACT25647.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 1435] gi|289439432|gb|EFD21925.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 605] gi|289685688|gb|EFD53176.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987] gi|289709074|gb|EFD73090.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis GM 1503] gi|289713079|gb|EFD77091.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85] gi|298494709|gb|EFI30003.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis 94_M4241A] gi|323720073|gb|EGB29179.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CDC1551A] gi|326903030|gb|EGE49963.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis W-148] gi|328459289|gb|AEB04712.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 4207] Length = 339 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 34/324 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 227 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++V + D P A + + + ++L L R T +L+EGG Sbjct: 228 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + ++ I+ Y + I++G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLG 300 >gi|308231834|ref|ZP_07663946.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu001] gi|308369792|ref|ZP_07419077.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu002] gi|308370712|ref|ZP_07666996.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu003] gi|308371959|ref|ZP_07667277.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu004] gi|308373132|ref|ZP_07667517.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu005] gi|308374304|ref|ZP_07667756.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu006] gi|308375454|ref|ZP_07668025.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu007] gi|308376713|ref|ZP_07668330.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu008] gi|308377721|ref|ZP_07480168.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu009] gi|308378931|ref|ZP_07668864.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu010] gi|308380068|ref|ZP_07669113.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu011] gi|308215903|gb|EFO75302.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu001] gi|308326399|gb|EFP15250.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu002] gi|308331085|gb|EFP19936.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu003] gi|308334898|gb|EFP23749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu004] gi|308338707|gb|EFP27558.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu005] gi|308342394|gb|EFP31245.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu006] gi|308346232|gb|EFP35083.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu007] gi|308350184|gb|EFP39035.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu008] gi|308354825|gb|EFP43676.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu009] gi|308358776|gb|EFP47627.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu010] gi|308362713|gb|EFP51564.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu011] Length = 337 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/324 (33%), Positives = 152/324 (46%), Gaps = 34/324 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 4 VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 63 RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 121 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q H+T K A S D A S I+ + Sbjct: 122 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R Sbjct: 182 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLR---------------- 225 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++V + D P A + + + ++L L R T +L+EGG Sbjct: 226 --------VVVGKRDIPPEARVLNDE-ARTMMIRTHEPMEVLRALSDR--TDVLLEGGPT 274 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + ++ I+ Y + I++G Sbjct: 275 LAGAFLRAGAINRILAYVAPILLG 298 >gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 579 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 103/367 (28%), Positives = 172/367 (46%), Gaps = 19/367 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA F+ A + GLTS +P+ C+I G V G G G AE A+E A Sbjct: 29 AIDAAFIRRAADLAEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 88 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE +RG+TAY+ +EP +G + +++ GI RVVV + P + G ++ L +G Sbjct: 89 GEFSRGSTAYLNMEPGDCHGDHTAVSA-LVQAGIDRVVVGIRHPLQHLRGSAIRELRSQG 147 Query: 124 IIVDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 I V+ + E E K+ A + R + LK A++ D I + + Sbjct: 148 IEVNVLGEDFESKVLEEARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 207 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L Sbjct: 208 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHG--QGHTPTRIVMTQSLDLPE 265 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + A ++ +++ K + ++ D + ++++ RG S+L Sbjct: 266 KANLWDVAEVSTIVVTQRGARKSFQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 325 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A S I+S ++ ++ + + +IG PSP+ G L M + DVC Sbjct: 326 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPV--GDLGMVEMTQALNLI--DVCY 381 Query: 353 EYIGKNL 359 E +G ++ Sbjct: 382 EQVGPDM 388 >gi|213027853|ref|ZP_03342300.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 320 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 113/323 (34%), Positives = 164/323 (50%), Gaps = 28/323 (8%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 HAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+G Sbjct: 3 HAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAG 62 Query: 114 RGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 RGL L Q GI V +M SE + +L R ++ LK+ S D MA S Sbjct: 63 RGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQ 122 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMR 221 IT ++ V LRAQS AIL TVLADDP LT R L QE+ P+R Sbjct: 123 WITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVR 182 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKK 277 I++D +++ +I++ + E+ D V ++ N ++ DL Sbjct: 183 IVIDSQNRVTPAHRIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVV 236 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEG 332 L+ L + + S+ VE G +A + + + LVD +I+Y + ++G +P LE+ Sbjct: 237 LMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKL 295 Query: 333 YLEKNFMCVRRDYFGSDVCLEYI 355 F + G DVCL + Sbjct: 296 ADAPQFTFSEIRHVGPDVCLHMV 318 >gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira thiodismutans ASO3-1] gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira thiodismutans ASO3-1] Length = 371 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/326 (29%), Positives = 155/326 (47%), Gaps = 12/326 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 + FM AL +R G T+ NP V L+ ++G+G G HAEV+A+E A E Sbjct: 4 SEFMLKALGLARQAKGFTAPNPCVGALVTCGDRIMGKGWHRAPGENHAEVEAIENARENG 63 Query: 68 RGATA---YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++ YVTLEPC+H+GR+PPC +I+ GI +++ DP+ +V G G ++L G+ Sbjct: 64 ADLSSCRMYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAEFLRNHGL 123 Query: 125 IVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E + + L A + Q R ++ LK A + D I S +T ++ V Sbjct: 124 RVTVGVEEQKCLDLIADFSLWQNSGRPYVYLKTASTLDGRIATRTGHSRWVTSANARQMV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR+ A+LVG T D+P LTCR+ ++ + P ++L + + Sbjct: 184 HQLRSIVGAVLVGGNTFYQDNPALTCRIQEVK-NQPWAVVLTSRLPDPDQDFYLLQKRAS 242 Query: 244 PVIIVTENDDPV--LALAFRKKNINIIYCDCR----DLKKLLTILVGR-GVTSLLVEGGA 296 I T+ + A + ++ D DLK L +L G+ LL EGG Sbjct: 243 RTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLDLKLGLEMLRRETGIYYLLCEGGG 302 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 +A S + L D + + + ++G+ Sbjct: 303 QLASSLLQQGLADEVWAFVALKILGD 328 >gi|311113483|ref|YP_003984705.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC 17931] gi|310944977|gb|ADP41271.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC 17931] Length = 415 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 154/329 (46%), Gaps = 40/329 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA-- 63 D R MS A+ +R G+ NP V +I G V+ G G PHAE L +A Sbjct: 44 DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADVLAQARA 101 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + A YV+LEPC+H G++ PC+ I E GI +V D + SG G ++L Sbjct: 102 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 160 Query: 123 GIIVDRMME-SEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G++ M E +E L+ + EKR IT+K A + D I A S ITG ++ Sbjct: 161 GVVTTYMREFAEDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 220 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 HL+R ++DA+++G T L D+P L R ++G + + P+R+++ Sbjct: 221 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVMG------------- 267 Query: 239 TALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E D P V L R N + + + LL L RGV L++EG Sbjct: 268 -----------ETDIPSTYKVCGLGTRDPE-NYMQVYTHEPRVLLDELYSRGVRHLMIEG 315 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + F L+D ++ YR+ I++G G Sbjct: 316 GPGMVGLFTGEDLLDELVWYRAPILMGHG 344 >gi|225454196|ref|XP_002273879.1| PREDICTED: similar to cytidine/deoxycytidylate deaminase family protein [Vitis vinifera] Length = 379 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 91/289 (31%), Positives = 148/289 (51%), Gaps = 10/289 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG+ Sbjct: 28 DGFYMRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDL 87 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI V Sbjct: 88 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEV 147 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVH 184 +E E K AY+ + + + +TL+ ++S +++ G G G+ S+ Sbjct: 148 TVAVEEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQ---- 203 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 L + DAI++ TV + G + P+ I++ I T + Sbjct: 204 -LVQEYDAIILSPTTVTEKFSFPASQEPGANQ--PLHILIAKSPISPNQIPIPHTEATSK 260 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 VII +N+ V +K I + D +L +L +G+ S+L++ Sbjct: 261 VIIFADNETAVEP-EMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLD 308 >gi|172040661|ref|YP_001800375.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium urealyticum DSM 7109] gi|171851965|emb|CAQ04941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium urealyticum DSM 7109] Length = 357 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 118/323 (36%), Positives = 156/323 (48%), Gaps = 38/323 (11%) Query: 20 WHV-GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 W G T NP V C+IV G ++GRG T G HAEV AL+ AG A GATAY TLE Sbjct: 27 WQAAGSTRPNPPVGCVIVDSAGTILGRGATEPAGGRHAEVVALQAAGARAAGATAYATLE 86 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-----DRMMES 132 PC+H GR+ PCA+ +I G+ V DP + G G + L G+ V + Sbjct: 87 PCNHTGRTGPCAEALIAAGVAEVHYLFADPG-KAEGGGGERLRAAGVTVSGPYLEPFHLG 145 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + + +L R H+TLK A + + M S ITG ++ VH R +A Sbjct: 146 EHRFSVEPWLRAAYLGRPHVTLKFASTLNGMAAATDRTSQWITGPTARADVHADRQYREA 205 Query: 193 ILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 ILVG GTVLADDP+LT R G++ P+R F + LL P Sbjct: 206 ILVGTGTVLADDPQLTARPGGVEGPRQPLR------FAVGQREIPSSARLLQPG------ 253 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 ALA + + RDL+ LT L +G++ +LVEGG +A SF+ LVD I Sbjct: 254 ---AHALAGQ-------HLPTRDLEAALTTLRRQGISDVLVEGGPELAGSFLAHGLVDEI 303 Query: 312 ILY-------RSQIVIGEGGIPS 327 Y R +G+GGI S Sbjct: 304 RAYLAPAWLPRGLPALGDGGIGS 326 >gi|52841411|ref|YP_095210.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628522|gb|AAU27263.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 357 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 11/333 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 4 QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 G T YVTLEPC+H+G++PPC II GI VV DP+ + + L + GI V Sbjct: 64 GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + +F +Y + + +T+KIA + D IG + V ++ + + H +R Sbjct: 124 HIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNALCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA + Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P A N + DL+ ++T L G + VE G A+ + Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHLGQLGYHDVWVEAGGAIFSALH 297 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + LV LY +G I + ++G EK Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330 >gi|309810737|ref|ZP_07704545.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185] gi|308435368|gb|EFP59192.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185] Length = 340 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 154/306 (50%), Gaps = 38/306 (12%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEARGATAYVTLEPCSHYG 83 NP V C++V DG+++ G G HAE A+ E G + RGATAYVTLEPC+H G Sbjct: 17 NPRVGCVVVDADGVILAEGYHRGAGTWHAEAAAINEAIATGVDLRGATAYVTLEPCAHTG 76 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM--MESEGKIFLHAY 141 R+P CA+ +I G+ RVV DP+ +G G Q L + G+ V+++ + + + + Sbjct: 77 RTPSCARALIRAGVARVVFGQPDPNGAAAG-GAQILREAGVAVEQVDTLAAASRDLNADW 135 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 R + K A + D + S ITG ++ VH RA+ AI+VG GTVL Sbjct: 136 TFSVTHARPFVRWKYASTLDGFSAASDGTSQWITGPAARVDVHAQRAEHGAIVVGTGTVL 195 Query: 202 ADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 ADDP+LT R G+Q+ P+R+++ D+ I TA + DD Sbjct: 196 ADDPQLTVRDAQGRAGVQQ--PLRVVVG-------DTPIPDTARVL--------DDAAST 238 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 L +++ +L L RG+ ++ +EGG +A F+ + LVD I+ Y + Sbjct: 239 LVLPRQSPT----------DVLAALHARGIHAVWLEGGPTLAAVFLRAGLVDEIVAYLAP 288 Query: 318 IVIGEG 323 ++G G Sbjct: 289 ALLGAG 294 >gi|225629653|ref|ZP_03787646.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591494|gb|EEH12541.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 130 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 63/128 (49%), Positives = 86/128 (67%), Gaps = 1/128 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 127 DR-MMESE 133 ++ +M+ E Sbjct: 123 EQGIMQKE 130 >gi|303238038|ref|ZP_07324581.1| riboflavin biosynthesis protein RibD [Prevotella disiens FB035-09AN] gi|302481828|gb|EFL44880.1| riboflavin biosynthesis protein RibD [Prevotella disiens FB035-09AN] Length = 335 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 45/361 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ ++ NP V +IV DG +IG G G HAEV A Sbjct: 3 MKQEDRDEMYMCRCLQLAKNGRLNAKPNPMVGAVIVSHDGKIIGEGYHVRCGEGHAEVNA 62 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +T YV+LEPCSHYG++PPCA I+ G+RR+V DP V GRG Sbjct: 63 FHSVRPTDEHLLSESTIYVSLEPCSHYGKTPPCADLIVRKGVRRMVCGCVDPFSEVQGRG 122 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----- 169 ++ + Q GI V ++E E ++ R R +I LK A ++D IG + Sbjct: 123 IERIRQAGIEVKVGVLEQECLALNREFIVRNTLHRPYILLKWAQTEDGFIGYSAAEAAEK 182 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 G++ I+ +K VH LRA D I+VG T + P+LT R +P++I+ Sbjct: 183 GTLFISNGFTKMLVHKLRAAYDGIVVGRVTNDLEQPKLTVR--EWSGANPLKIV------ 234 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 ++ ++ ++ A D+ VL ++ K I I L++ + V S Sbjct: 235 MTSKAETMQNA-----------DENVLFVSSPKAMIEAI----GKLERT------KPVCS 273 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 ++VEGGA SFI+ L D I + + I + G+ +P L +N V+R+++G+ Sbjct: 274 VIVEGGAQTLQSFIDENLFDEIRVETAPFSIHK-GVAAP----QLPQNIEVVKREFYGNS 328 Query: 350 V 350 + Sbjct: 329 I 329 >gi|169629892|ref|YP_001703541.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium abscessus ATCC 19977] gi|169241859|emb|CAM62887.1| Probable bifunctional riboflavin biosynthesis protein RibG [Mycobacterium abscessus] Length = 340 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 120/360 (33%), Positives = 175/360 (48%), Gaps = 46/360 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+R + G T NP V +I+ G V G G T G HAEV AL AG ARG Sbjct: 11 MDLAIRAAEEVKGSTYPNPPVGAVILDAAGQVAGVGGTRPPGQEHAEVVALAGAGAAARG 70 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGI 124 TA VTLEPC+H GR+ PC + G+ RVV V DP+ + +G R L G+ Sbjct: 71 GTAVVTLEPCNHQGRTGPCVDALAAAGVSRVVYAVADPNPQAAGGAARLRTLGIEVLDGL 130 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 DR+ + +LH +Q R H+T K S D S IT S+ VH Sbjct: 131 ASDRVSAGPLREWLH----KQRTGRPHVTWKYGASVDGRSAANDGTSQWITSEQSRADVH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA +DA+LVG GTV ADDP+LT R N L H P+R+++ ++S D+K++ Sbjct: 187 RRRAFADAVLVGTGTVFADDPQLTARTPDNELVPHQPLRVVVG-MREVSSDAKVL----- 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 NDD + + D ++L L R T +++EGG +A +F Sbjct: 241 --------NDD-----------SHTMVIRTHDPAEVLAALGDR--TDIILEGGPTLAGAF 279 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357 + + LVD I+ Y + +++G G +P+ +E+ + +R +Y G DV L + + Sbjct: 280 LRAGLVDRILAYLAPMLLG-GNVPA-VEDVGVTTLSRALRWEYDQIERMGPDVLLSLVPR 337 >gi|254775815|ref|ZP_05217331.1| riboflavin biosynthesis protein RibD [Mycobacterium avium subsp. avium ATCC 25291] Length = 341 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 155/316 (49%), Gaps = 33/316 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ S G T NP V +++ + T G HAE+ AL AG+ A G Sbjct: 13 MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 T VTLEPC+H+G++PPC ++E G+ VV + DP+ + +G G L + G+ V Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAIADPNPQAAG-GAGRLQEAGVTVRSG 131 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + L +L +Q H+T K A S D A S I+ +S+ +H R Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEVSRLDLHRRR 191 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 A +DAI+VG GTVLADDP LT RL L + P+R+++ ++ ++K++ Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVG-MREIPSEAKVL-------- 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 NDD + D ++L + R T +L+EGG +A +F+ + Sbjct: 243 -----NDD-----------SRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284 Query: 306 RLVDSIILYRSQIVIG 321 LV+ I++Y + ++G Sbjct: 285 GLVNRILVYLAPTLLG 300 >gi|219557312|ref|ZP_03536388.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T17] Length = 237 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 118/227 (51%), Gaps = 7/227 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVV 230 >gi|330814131|ref|YP_004358370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter sp. IMCC9063] gi|327487226|gb|AEA81631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter sp. IMCC9063] Length = 355 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/222 (32%), Positives = 118/222 (53%), Gaps = 8/222 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64 + F AL +R + +T NPSV C++ + ++ GVT+ G PHAE AL + Sbjct: 9 YQKYFSELALSLARINKFITKENPSVGCVVTDFNNNILSSGVTSKNGRPHAENNALIKLN 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++ +VTLEPC+HYG++PPC + I+ ++++ D + V+G GL++L + I Sbjct: 69 KKI-TKKIFVTLEPCNHYGKTPPCTKKIVNFNVKQLHCNQIDKNPAVNGSGLKFLKENKI 127 Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ES K F Y K ++T K+A++++ G T S Sbjct: 128 ---KIKESNINKNFYSNYNYSVKNKLPYVTAKLAITKN--FSTVVSGKKYFTNSKSLKFA 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 HLLR +D+IL+G T+L D P+L CR+ GL +HSP ++ Sbjct: 183 HLLRYMNDSILIGQKTLLKDYPKLNCRIEGLSQHSPKIFFIN 224 >gi|213579885|ref|ZP_03361711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 301 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 102/306 (33%), Positives = 151/306 (49%), Gaps = 28/306 (9%) Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V + Sbjct: 1 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGL 60 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R ++ LK+ S D MA S IT ++ V LRAQ Sbjct: 61 MMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQ 120 Query: 190 SDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R L QE+ P+RI++D +++ +I++ Sbjct: 121 SHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQ 180 Query: 239 TALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + E+ D V ++ N ++ DL L+ L + + S+ VE Sbjct: 181 QPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSIWVEA 234 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G +P LE+ F + G D Sbjct: 235 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLADAPQFTFSEIRHVGPD 293 Query: 350 VCLEYI 355 VCL + Sbjct: 294 VCLHMV 299 >gi|150026064|ref|YP_001296890.1| riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum JIP02/86] gi|149772605|emb|CAL44088.1| Riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum JIP02/86] Length = 335 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 93/302 (30%), Positives = 148/302 (49%), Gaps = 25/302 (8%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--RGATAYVTLEPCSHYGRS 85 NPSV +IV + +IG G TA G HAEV A+ + +T YV+LEPCSH+G++ Sbjct: 25 NPSVGAVIVFENKIIGEGYTAAYGGNHAEVNAILSVKNKDLLAKSTIYVSLEPCSHFGKT 84 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144 PPC II+ I VV+ D + +VSG+G++ L + G ++ ++E+E + + T Sbjct: 85 PPCCDLIIKYKIPNVVIGTVDSNSKVSGQGIKKLIEAGANVIVGILEAECRESNKRFFTF 144 Query: 145 QVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 +KR +I LK A ++D I V IT S+ H R + AILVG T + Sbjct: 145 HEKKRPYIILKWAETKDQFIAPLLKNEQKPVWITNIYSRQLAHKWRTEEQAILVGTQTAI 204 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 D+P L R +P RI+LD + ++ ++ I VI Sbjct: 205 DDNPRLDVR--DWTGKNPTRIVLDKNNRIPKENHIFDIRQKTFVI--------------S 248 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 K IN Y + L ++++ L + S+++EGG +FI++ L D ++ Q + Sbjct: 249 DKTIN--YSENVAL-QIVSFLFDNNLQSVIIEGGRQTLQTFIDANLWDEARIFVGQELFS 305 Query: 322 EG 323 G Sbjct: 306 SG 307 >gi|103488468|ref|YP_618029.1| riboflavin biosynthesis protein RibD [Sphingopyxis alaskensis RB2256] gi|98978545|gb|ABF54696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingopyxis alaskensis RB2256] Length = 325 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 118/301 (39%), Positives = 153/301 (50%), Gaps = 44/301 (14%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH-YG 83 ++ NP+V CLIVK V+ RG T GG PH E AL AG ARGATAYVTLEPC H Sbjct: 26 SAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVAARGATAYVTLEPCVHASA 85 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYL 142 R P C+ +I G+ RVVV V DPD R G G+ L GI V ++ ++ + + + Sbjct: 86 RGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIEVTVDVLPADARAAMAPWW 145 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 TRQ R +TLK+A S D I A S ITG ++ HL RA +AILVG GT A Sbjct: 146 TRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGDRARAHGHLERASHEAILVGRGTFEA 205 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D P L RL GL++ SP + +L + TA+ +P I Sbjct: 206 DAPRLDVRLPGLEDRSPKKFVL-----TRGAAPEGWTAVASPDAI--------------- 245 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 GV SLLVEGGA A +F+ + VD ++LYR+ I+IG+ Sbjct: 246 ----------------------EGVDSLLVEGGAGAAAAFLAADRVDRLLLYRAPILIGD 283 Query: 323 G 323 G Sbjct: 284 G 284 >gi|294675036|ref|YP_003575652.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23] gi|294472928|gb|ADE82317.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23] Length = 307 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 119/233 (51%), Gaps = 8/233 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM ++ ++ NP V +IV +G +IG G G HAEV A E Sbjct: 4 DKKFMQRCIQLAKNGQLNAKPNPMVGAVIVHNGRIIGEGYHVRCGLAHAEVNAFASVRAE 63 Query: 67 ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +T YV+LEPCSHYG++PPCA IIE G+RRVVV D V GRG+Q L Sbjct: 64 DEALLPESTIYVSLEPCSHYGKTPPCADLIIEKGVRRVVVGCIDEFAEVQGRGIQKLRDA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V+ ++E E K + T EKR +I LK A + + I V I+ +K Sbjct: 124 GIEVEVGVLEDECKALNRRFFTFHREKRPYIILKWAQTANGFID-DHHQPVQISSDFTKM 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 H LRA+ DAILVG T + P+L R P R+++D L+L+S Sbjct: 183 LSHKLRAEEDAILVGRVTDEREHPQLNVR--EWYGPDPKRMVIDRAHPLNLES 233 >gi|118462896|ref|YP_882551.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104] gi|118164183|gb|ABK65080.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104] Length = 341 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 98/316 (31%), Positives = 154/316 (48%), Gaps = 33/316 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ S G T NP V +++ + T G HAE+ AL AG+ A G Sbjct: 13 MRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G G L + G+ V Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + L +L +Q H+T K A S D A S I+ S+ +H R Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 A +DAI+VG GTVLADDP LT RL L + P+R+++ ++ ++K++ Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVG-MREIPSEAKVL-------- 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 NDD + D ++L + R T +L+EGG +A +F+ + Sbjct: 243 -----NDD-----------SRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284 Query: 306 RLVDSIILYRSQIVIG 321 LV+ I++Y + ++G Sbjct: 285 GLVNRILVYLAPTLLG 300 >gi|225159038|ref|ZP_03725347.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2] gi|224802351|gb|EEG20614.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2] Length = 388 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/326 (31%), Positives = 147/326 (45%), Gaps = 16/326 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 FM AL +R G T NP V +IV+DG V+ G A G PHAE AL G + Sbjct: 11 FMWQALALARRAWGNTHPNPMVGAIIVEDGAVVAEGWHARDGGPHAERVALTALGRAPKP 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCS +GR+ C IIE GIRRVVV DP+ +G G L G+ ++ Sbjct: 71 GATLYVTLEPCSTHGRTGACCDAIIEAGIRRVVVGATDPNPDHAGAGYARLRAAGVEVIT 130 Query: 128 RMMESEG---KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + E E + + ++T + + KIA + D I S ITG ++ VH Sbjct: 131 GVRERECADLNLIFNQWITTGLPL---LAGKIATTLDGKIACRTGHSKWITGEAARADVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA- 243 R AI VG TVLADDP LT R E P R + D + ++ + Sbjct: 188 RWRRLFPAIAVGAMTVLADDPRLTARPADGGEWCPWRFVFDGLLRTLGGPRLPQVYTDGH 247 Query: 244 ---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGA 296 +++ T + R+ + + D + R +T + EGGA Sbjct: 248 RERTIVVTTPHGGMGYVRKLREMGVAVWVLDAPTQRVNFADFRRRCAEEKITGVYFEGGA 307 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE 322 + + SR +D + YR+ ++ + Sbjct: 308 QLLSELLRSRELDYLFNYRAPLLFAD 333 >gi|212275115|ref|NP_001130669.1| hypothetical protein LOC100191772 [Zea mays] gi|194689788|gb|ACF78978.1| unknown [Zea mays] Length = 392 Score = 129 bits (323), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 23/316 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 48 DAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGNL 107 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI V Sbjct: 108 AENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGISV 167 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQVH 184 + E+ + AY+ R + ++ TL+ +S + +I G G+ G+ S+ Sbjct: 168 RVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYSQ---- 223 Query: 185 LLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 L + D ++ I + LA L R G + P+ II+ L + + Sbjct: 224 -LMKEYDGVI--ISSDLAKMSALPLSREAGTNQ--PLCIIIAQGESSRLHIPSLSQEHAS 278 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGAA 297 I++ D PV + + DL+ +L +L RG+ S+LV E A+ Sbjct: 279 RAIVLA--DSPV---TVEPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFAS 333 Query: 298 VAHSFINSRLVDSIIL 313 + + F +LV +++ Sbjct: 334 LLNDFQEDKLVQKVVV 349 >gi|195640478|gb|ACG39707.1| riboflavin biosynthesis protein ribD [Zea mays] Length = 392 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 99/316 (31%), Positives = 158/316 (50%), Gaps = 23/316 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 48 DAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGNL 107 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI V Sbjct: 108 AENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGISV 167 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQVH 184 + E+ + AY+ R + ++ TL+ +S + +I G G+ G+ S+ Sbjct: 168 RVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYSQ---- 223 Query: 185 LLRAQSDAILVGIGTVLADDPELT-CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 L + D ++ I + LA L R G + P+ II+ L + + Sbjct: 224 -LMKEYDGVI--ISSDLAKMSALPLSREAGTNQ--PLCIIIAQGESSRLHIPSLSQEHAS 278 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGGAA 297 I++ D PV + + DL+ +L +L RG+ S+LV E A+ Sbjct: 279 RAIVLA--DSPV---TVEPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFAS 333 Query: 298 VAHSFINSRLVDSIIL 313 + + F +LV +++ Sbjct: 334 LLNDFQEDKLVQKVVV 349 >gi|54297135|ref|YP_123504.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Paris] gi|53750920|emb|CAH12331.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str. Paris] Length = 357 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 97/333 (29%), Positives = 150/333 (45%), Gaps = 11/333 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 4 QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 G T YVTLEPC+H+G++PPC II GI+ VV DP+ + + L + GI V Sbjct: 64 GVTLYVTLEPCNHWGKTPPCVDAIINHGIQEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + F +Y + + +T+KIA + D IG + V ++ + + H +R Sbjct: 124 HIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA + Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P A N + DL ++T L G + VE G A+ + Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALH 297 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + LV LY +G I + ++G EK Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330 >gi|297804068|ref|XP_002869918.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315754|gb|EFH46177.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] Length = 426 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 73/190 (38%), Positives = 111/190 (58%), Gaps = 7/190 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 74 DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ ++RVVV + DP+ VS G+ L GI V Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVSSSGISRLKDAGIDV 193 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184 +E E K ++ R + ++ + L+ ++S + + G G+ G+ SK Sbjct: 194 TVGVEEELCKKMNEGFIHRMLTEKPFLALRYSMSVNGCFLDKIGEGASDSGGYYSK---- 249 Query: 185 LLRAQSDAIL 194 L + DAI+ Sbjct: 250 -LLQEYDAII 258 >gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205] gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205] Length = 345 Score = 128 bits (321), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/364 (29%), Positives = 161/364 (44%), Gaps = 60/364 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM L+ ++ NP V +IV DG +IG G G HAEV A Sbjct: 23 DEMFMRRCLQLAKNGRENAKPNPMVGAVIVSGDGRIIGEGYHVRCGEGHAEVNAFASVKP 82 Query: 66 EAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E AT YV+LEPCSHYG++PPCA I+ G++R V DP +V GRG++ + + Sbjct: 83 EDEHLLSQATIYVSLEPCSHYGKTPPCADLIVRKGVKRCVCGCVDPFAKVQGRGIRKIRE 142 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGF 177 GI V ++E+E ++T +R +I LK A + + + G G S P T Sbjct: 143 AGIEVTVGVLEAECLELNKRFITFNTHQRPYIILKWAQTANGFLDNGGRGMAISSPFTKM 202 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S H LRA++DAIL+G T D +L R PMR+++D H Sbjct: 203 LS----HKLRAENDAILIGRVTDERDHSQLNVR--DWSGKDPMRLVIDRHHPC------- 249 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 L F + + L++++ L V SL+VEGGA Sbjct: 250 -----------------FEGLDFSRGKTEV-------LQQIMQYLYNNKVQSLIVEGGAI 285 Query: 298 VAHSFINSRLVDSIILYRSQIVIG-------EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +F+++ L D I R++ ++ G P+P+ L N + + + +V Sbjct: 286 THQAFLDAGLWDEI---RAETLLSTSVENSVTSGTPAPM----LPHNVRLISHEAYDGNV 338 Query: 351 CLEY 354 Y Sbjct: 339 INTY 342 >gi|297745271|emb|CBI40351.3| unnamed protein product [Vitis vinifera] Length = 348 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/285 (31%), Positives = 146/285 (51%), Gaps = 10/285 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG+ A A Sbjct: 1 MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI V + Sbjct: 61 TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120 Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCGSVPITGFISKNQVHLLRA 188 E E K AY+ + + + +TL+ ++S +++ G G G+ S+ L Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQ-----LVQ 175 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAI++ TV + G + P+ I++ I T + VII Sbjct: 176 EYDAIILSPTTVTEKFSFPASQEPGANQ--PLHILIAKSPISPNQIPIPHTEATSKVIIF 233 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +N+ V +K I + D +L +L +G+ S+L++ Sbjct: 234 ADNETAVEP-EMVQKGIETVVLDQINLNAVLEYCKRQGLCSILLD 277 >gi|255325997|ref|ZP_05367085.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC 25296] gi|255296888|gb|EET76217.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC 25296] Length = 436 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/324 (31%), Positives = 152/324 (46%), Gaps = 27/324 (8%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63 A M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A Sbjct: 61 AEAMTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GA YV+LEPC+H GR+ PC+ + E GI + D D + G +L +G Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGINELYYAYSD-DTENAAGGAAYLRSQG 177 Query: 124 IIVDRMMESEGKIFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + V M E +L + E+R IT K A + D I A S ITG ++ Sbjct: 178 VTVHAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIKT 239 HL+R ++DA+++G T L DDP L R NG + E P+R+++ K + Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVMG---KTEITENYRVR 294 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L P + DP N + D ++LL L RGV L++EGG + Sbjct: 295 GLNPPEGVEA---DPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 F L+D ++ YR+ +++G+G Sbjct: 342 GLFAGEDLIDEMVWYRAPMIMGQG 365 >gi|323343508|ref|ZP_08083735.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269] gi|323095327|gb|EFZ37901.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269] Length = 321 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 108/352 (30%), Positives = 160/352 (45%), Gaps = 64/352 (18%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ---ALEEA 63 D R+M ++ + + NP V L+ +G +IG G G HAEV +++ A Sbjct: 17 DIRYMRRCIQLALNGMQNAKPNPMVGALLACEGRIIGEGYHIRFGEGHAEVNCFASVKPA 76 Query: 64 GEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E +T YV+LEPCSHYG++PPCA II G+RRVVV DP +V GRG+ L + Sbjct: 77 DEHLLPQSTLYVSLEPCSHYGKTPPCADLIIRNGVRRVVVGCIDPFAQVHGRGIHKLREA 136 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178 GI +V ++E E ++T R +I LK A + + I A S P T + Sbjct: 137 GIEVVVGVLERECLALNKRFITYNTRLRPYIILKWAQTSNGFIDDCFHALSISTPFTKML 196 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S H LR +SDAILVG T + P L R P+RI+LD Sbjct: 197 S----HKLRVESDAILVGRVTDEREHPMLNVR--HWSGRDPLRIVLD------------- 237 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++NI L+T L + V SL+VEGGA Sbjct: 238 ----------------------HRQNI----------ADLMTSLYEKKVQSLIVEGGAKT 265 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 SF+ + L D I + + + + +GG P+P + + +R+D + ++ Sbjct: 266 LQSFLTAGLWDEIRVETAPLTV-KGGTPAP----RIPTDIRLIRQDIYDGNI 312 >gi|54294122|ref|YP_126537.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Lens] gi|53753954|emb|CAH15425.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str. Lens] Length = 357 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 17/336 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 4 QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 G T YVTLEPC+H+G++PPC II GI VV DP+ + + L + GI V Sbjct: 64 GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + +F +Y + + +T+KIA + D IG + V ++ + + H +R Sbjct: 124 HIPIKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNSLCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246 A SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA + Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDTGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIYH 242 Query: 247 ------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 T + A+ + +N L+ ++T L G + VE G A+ Sbjct: 243 QPQANQAKTYPNSTHYAMPLQNGLMN--------LEAIITHLGQLGYHDVWVEAGGAIFS 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + + LV LY +G I + ++G EK Sbjct: 295 ALHSKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330 >gi|218191968|gb|EEC74395.1| hypothetical protein OsI_09744 [Oryza sativa Indica Group] Length = 396 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167 Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S+ Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 227 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + ++ Q P+ II+ L+ +K Sbjct: 228 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQGENSQLNIPFLKEE 279 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294 A ++++ D P+ ++++ D +L +L +L RG+ S+LV+ G Sbjct: 280 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334 Query: 295 GAAVAHSFINSRLVDSIIL 313 A++ ++F + +LV +++ Sbjct: 335 IASLLNNFQDDKLVQKVVV 353 >gi|317484774|ref|ZP_07943673.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6] gi|316923981|gb|EFV45168.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6] Length = 379 Score = 127 bits (319), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 184/386 (47%), Gaps = 36/386 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60 P SF A R RW + NP+V ++V+DG+ + RG TAYG HAEV+ L Sbjct: 4 PYESFMREAAELAER-GRWSA---APNPTVGAVLVRDGVAVARGWHTAYGKS-HAEVECL 58 Query: 61 EEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A EA+G T VTLEPC+H G++PPC + +I GIR VV+ + DP+ + +G G Sbjct: 59 KDA--EAKGVDPSACTLVVTLEPCNHQGQTPPCTEAVIAAGIRHVVIGLRDPNPKAAG-G 115 Query: 116 LQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 ++ L++ G+ V+ + E + + +L Q KR ++ LK+A++ D I S I Sbjct: 116 MERLAEAGVEVEAGVCEELCRDLVADFLIWQTTKRPYVMLKLAMTLDGRIATRTGHSRWI 175 Query: 175 TGFISKNQVHLLRAQ----SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230 TG ++ QVH LRA AILVG T+ D+P LT RL+ E P+ + + Sbjct: 176 TGETARRQVHELRANVGRAGGAILVGGNTLHTDNPLLTARLDDPVERQPLAVSISSRVPA 235 Query: 231 SLDSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGR 285 + K + T + A R++ + I D DL ++L L Sbjct: 236 PDSLLLFKERPTETIFFTTASGAATPRAAQLRERGVRIRGLDRWKSGEDLVQILEYLRQE 295 Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEK 336 G +L EGG + S + + LVD L+ + V+G +G P L+E Sbjct: 296 AGCPYVLCEGGGRLGLSLLEAGLVDEFHLHIAPKVLGDNDARPLFDGRTPLELDEAL--- 352 Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCLQ 362 + VR + G D L + C Q Sbjct: 353 SLRLVRMEPCGEDGHLIFRPVRACSQ 378 >gi|38233905|ref|NP_939672.1| putative riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC 13129] gi|38200166|emb|CAE49847.1| Putative riboflavin biosynthesis protein [Corynebacterium diphtheriae] Length = 334 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 148/307 (48%), Gaps = 41/307 (13%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +++ +G ++GRG T G HAE+ AL +AGE +G T VTLEPC+H Sbjct: 20 GTTHPNPPVGAVVLSSNGSIVGRGHTQPPGGSHAEIMALRQAGENTKGGTLVVTLEPCNH 79 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 +GR+ PC+ I E GI VV + D G G ++L ++G+ V + + + A Sbjct: 80 WGRTGPCSHAISESGIEHVVYLMQDTGSLEKG-GAEYLRRQGLKVTFL-----GLSVAAL 133 Query: 142 LTRQVEK---RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 + Q K ++ K A + D + S ITG S++ + R DAI+VG G Sbjct: 134 IPWQASKDRGWPYVVGKTAHTLDGFVAAEDHSSKWITGSASRDYANRQRRHFDAIIVGTG 193 Query: 199 TVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 TV AD+P LT R + L H P+++++ K+S +++ ++ Sbjct: 194 TVKADNPALTARKDDGTLLPHQPLKVVIGTS-KISEGTQLARSG---------------- 236 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + +++ L L RGV +LVEGG + H F+ S +D + Y + Sbjct: 237 ------------FVQFSTIEEALVQLWDRGVRYVLVEGGPHLLHGFLTSGNLDQLHSYSA 284 Query: 317 QIVIGEG 323 +++ G Sbjct: 285 PMLLTRG 291 >gi|41407234|ref|NP_960070.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395585|gb|AAS03453.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 341 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 97/316 (30%), Positives = 152/316 (48%), Gaps = 33/316 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ S G T NP V +++ + T G HAE+ AL AG+ A G Sbjct: 13 MHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEILALRRAGDLAAG 72 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G G L + G+ V Sbjct: 73 GTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAG-GAGRLQEAGVTVRSG 131 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + L +L +Q H+T K A S D A S I+ S+ +H R Sbjct: 132 LLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISSEASRLDLHRRR 191 Query: 188 AQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 A +DAI+VG GTVLADDP LT RL L + P+R+++ LS ++K++ Sbjct: 192 AAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILS-EAKVL-------- 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + D ++L + R T +L+EGG +A +F+ + Sbjct: 243 ----------------NEESRTMVIRTHDPAEVLKAVSDR--TDVLLEGGPTLAGAFVRA 284 Query: 306 RLVDSIILYRSQIVIG 321 LV+ I++Y + ++G Sbjct: 285 GLVNRILVYLAPTLLG 300 >gi|317154507|ref|YP_004122555.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis Aspo-2] gi|316944758|gb|ADU63809.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis Aspo-2] Length = 377 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/330 (29%), Positives = 155/330 (46%), Gaps = 14/330 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ A+ +R G + NP V ++V ++ G G HAE + L +A G Sbjct: 14 MARAIELARLGRGAVAPNPCVGAVLVDGDRIVAEGWHMRYGGLHAERECLVDARSKGVTP 73 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG T +VTLEPC+H+G++PPC Q +IE G+ RVVV DP+ +G G++ L+ GI V+ Sbjct: 74 RGLTMFVTLEPCNHHGKTPPCTQALIEEGVARVVVGTRDPNPVAAG-GIERLTAAGIEVE 132 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +ESE + + +L Q + +K+A + D I P++ S +VH L Sbjct: 133 VGALESECRDLIADFLVWQNSHSTFNIIKMAATLDGKIASRLRRPEPVSCAESFARVHAL 192 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAP 244 R++ DAI+VG T ADDP LTCRL L + P +++ ++ Sbjct: 193 RSRVDAIIVGGSTFRADDPSLTCRLTTLPDGFVQPYGVVITSRLPDDPARHVLTRTRPER 252 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-------RGVTSLLVEGGAA 297 I +T + A R + L + +G G + L EGG Sbjct: 253 TIFMTTDTSARSQEADRLREGGTSVWPLPGPPGGLNLSLGLERLRYDLGCHTTLCEGGGQ 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +A F+ L D I+ + + ++G+ G PS Sbjct: 313 LAMQFVGQGLGDEIVHFVAPRILGDEGAPS 342 >gi|307609932|emb|CBW99459.1| riboflavin biosynthesis protein RibD [Legionella pneumophila 130b] Length = 357 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 17/336 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 4 QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 G T YVTLEPC+H+G++PPC II GI VV DP+ + + L + GI V Sbjct: 64 GVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQVR 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + +F +Y + + +T+K+A + D IG + V ++ + + H +R Sbjct: 124 HIPIKAIDVFYKSYAYWTMTHKPRVTVKMAQTFDGKIGKSEGARVVLSNALCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI- 246 A SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA + Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIYH 242 Query: 247 ------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 T + A+ + +N L+ ++T L G + VE G A+ Sbjct: 243 QPQANQAKTYPNSTHYAMPLQNGLMN--------LEAIITHLGQLGYHDVWVEAGGAIFS 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + + LV LY +G I + ++G EK Sbjct: 295 ALHSKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330 >gi|222624084|gb|EEE58216.1| hypothetical protein OsJ_09181 [Oryza sativa Japonica Group] Length = 396 Score = 127 bits (318), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167 Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S+ Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 227 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + ++ Q P+ II+ L+ +K Sbjct: 228 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQCENSQLNIPFLKEE 279 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294 A ++++ D P+ ++++ D +L +L +L RG+ S+LV+ G Sbjct: 280 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334 Query: 295 GAAVAHSFINSRLVDSIIL 313 A++ ++F + +LV +++ Sbjct: 335 IASLLNNFQDDKLVQKVVV 353 >gi|115450331|ref|NP_001048766.1| Os03g0117200 [Oryza sativa Japonica Group] gi|108705865|gb|ABF93660.1| riboflavin biosynthesis protein RibD containing protein, expressed [Oryza sativa Japonica Group] gi|113547237|dbj|BAF10680.1| Os03g0117200 [Oryza sativa Japonica Group] gi|215687333|dbj|BAG91867.1| unnamed protein product [Oryza sativa Japonica Group] Length = 423 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/319 (29%), Positives = 164/319 (51%), Gaps = 22/319 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 75 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 134 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 135 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 194 Query: 124 IIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S+ Sbjct: 195 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYSQ 254 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + ++ Q P+ II+ L+ +K Sbjct: 255 -----LLKEYDGVIISSNFAKTNTLPVSREAGAKQ---PLYIIIAQCENSQLNIPFLKEE 306 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE------G 294 A ++++ D P+ ++++ D +L +L +L RG+ S+LV+ G Sbjct: 307 RAAEAVVLS--DSPI---TVEPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 361 Query: 295 GAAVAHSFINSRLVDSIIL 313 A++ ++F + +LV +++ Sbjct: 362 IASLLNNFQDDKLVQKVVV 380 >gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis thaliana] Length = 426 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 74 DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI V Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 193 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184 +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 194 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 249 Query: 185 LLRAQSDAIL 194 L + DAI+ Sbjct: 250 -LLQEYDAII 258 >gi|18415600|ref|NP_567618.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|26452452|dbj|BAC43311.1| unknown protein [Arabidopsis thaliana] gi|29824151|gb|AAP04036.1| unknown protein [Arabidopsis thaliana] gi|332658979|gb|AEE84379.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arabidopsis thaliana] Length = 426 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 74 DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 133 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI V Sbjct: 134 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 193 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184 +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 194 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 249 Query: 185 LLRAQSDAIL 194 L + DAI+ Sbjct: 250 -LLQEYDAII 258 >gi|257067228|ref|YP_003153483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Brachybacterium faecium DSM 4810] gi|256558046|gb|ACU83893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Brachybacterium faecium DSM 4810] Length = 355 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 103/307 (33%), Positives = 142/307 (46%), Gaps = 39/307 (12%) Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYG 83 NP V C+++ DG ++ G G HAE AL A G GATA VTLEPC+H G Sbjct: 27 NPRVGCVLLGADGAMLAEGHHRGAGTAHAEADALARARSLGIPLTGATAVVTLEPCAHTG 86 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143 R+ PCA+ ++E GI RVV+ DP+ SG G+ L GI V+ + E A L Sbjct: 87 RTGPCAEALLEAGIGRVVIARTDPNPVASG-GIDRLRAAGIDVE-LDVPEALAAAAAALN 144 Query: 144 RQVE-----KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 R E R +T K A++ D A S ITG ++ +VHLLR D +LVG G Sbjct: 145 RGWEHGLRHSRPLVTAKTALTLDGRAAAADGTSQWITGPAAREEVHLLRTTCDTVLVGTG 204 Query: 199 TVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 T D P LT R L P+R ++ S + P + E + Sbjct: 205 TARIDQPTLTARRPDGALHPRQPLRAVMG-------TSAV-------PTLPAVEGAGQQV 250 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 LA RD L L RG +L+EGG + +F+ + LVD +IL+ + Sbjct: 251 RLA------------TRDPSAALAELFARGARHVLLEGGPTLTAAFLRAGLVDELILHLA 298 Query: 317 QIVIGEG 323 ++G G Sbjct: 299 PTLLGAG 305 >gi|254822405|ref|ZP_05227406.1| riboflavin biosynthesis protein RibD [Mycobacterium intracellulare ATCC 13950] Length = 341 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 104/325 (32%), Positives = 156/325 (48%), Gaps = 34/325 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 P DA M A+ S G T NP V +I+ G V+G G T G HAE+ AL Sbjct: 5 PGDGLDA-AMRLAIEQSTLVKGTTYPNPPVGAVILDAGGEVVGVGGTEPAGGDHAEILAL 63 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ A G T VTLEPC+HYG++PPC +++ + VV V DP+ + +G G L Sbjct: 64 RRAGDLAAGGTVVVTLEPCNHYGKTPPCVNALLDANVATVVYAVADPNPQAAG-GAARLE 122 Query: 121 QKGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + G+ V + + + L +L +Q H+T K A S D A S I+ Sbjct: 123 EAGVAVRSGVLADEVARGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSQWISSEA 182 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKI 236 S+ +H R DAI+VG GTVLADDP LT RL L P+R+++ ++ ++K+ Sbjct: 183 SRLDLHRRRGACDAIVVGTGTVLADDPALTARLPDGSLAARQPLRVVVG-MREIPSEAKV 241 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + NDD + D ++L + R T +L+EGG Sbjct: 242 L-------------NDDS-----------RTMLIRTHDPAEVLKAVSDR--TDVLLEGGP 275 Query: 297 AVAHSFINSRLVDSIILYRSQIVIG 321 +A +F+ + VD I+ Y + ++G Sbjct: 276 TLAGAFLRAGAVDRILAYVAPTLLG 300 >gi|296170729|ref|ZP_06852302.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894612|gb|EFG74348.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 340 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 107/337 (31%), Positives = 165/337 (48%), Gaps = 58/337 (17%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 P DA M A+ S+ G T NP V +++ G+V+G G T G HAEV AL Sbjct: 4 PAHGLDA-AMRLAIEQSKQVKGTTYPNPPVGAVVLDAGGVVVGVGGTEPAGGDHAEVLAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD------------ 108 AG+ A G TA VTLEPC+H+GR+PPC ++E + VV V DP+ Sbjct: 63 RRAGDLAAGGTAVVTLEPCNHHGRTPPCVNALLEAKVATVVYAVADPNPAAAGGAARLAE 122 Query: 109 --VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166 V+V+G G++ D + + +LH +Q H+T K A S D Sbjct: 123 AGVQVTG---------GVLADEVAGGPLREWLH----KQRTGSPHVTWKYASSVDGRSAA 169 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224 A S I+ S+ +H RA +DAI+VG GTVLADDP LT RL L P+R+++ Sbjct: 170 ADGTSQWISSEASRLDLHRRRATADAIVVGTGTVLADDPTLTARLPDGSLAARQPLRVVV 229 Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 ++ ++K++ NDD + + I D ++ K L+ Sbjct: 230 G-MREIPSEAKVL-------------NDD--------SRTMVIRTHDPMEVIKALS---- 263 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 T +L+EGG +A +F+ + +V+ I++Y + +++G Sbjct: 264 -DRTDVLLEGGPTLAGAFLRAGVVNRILVYVAPMLLG 299 >gi|300858536|ref|YP_003783519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium pseudotuberculosis FRC41] gi|300685990|gb|ADK28912.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium pseudotuberculosis FRC41] gi|302206248|gb|ADL10590.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis C231] gi|302330806|gb|ADL21000.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis 1002] gi|308276490|gb|ADO26389.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis I19] Length = 373 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 100/304 (32%), Positives = 144/304 (47%), Gaps = 35/304 (11%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V IV G ++G G T G PHAEV AL+ AG ARGAT VTLEPC H Sbjct: 64 GSTSPNPPVGAAIVSAQGDIVGVGYTQPVGGPHAEVMALQSAGGAARGATIVVTLEPCQH 123 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 GR+ PC Q +++ GI VV C+ DP R G G ++L + G+ V ++ + L + Sbjct: 124 QGRTGPCTQALLDAGIAEVVYCLKDPG-RKEGGGHEFLQKNGVRVT-FLDVPVRA-LRPW 180 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L Q +R ++ K A + D I S IT ++++ R DAI+VG GT L Sbjct: 181 LQAQKLQRPYVVGKSAHTVDGFIAAVDGTSQWITSEVARSYAISQRKLFDAIVVGTGTAL 240 Query: 202 ADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 AD+P LT R +E P+R+++ + + A L+ DP + Sbjct: 241 ADNPRLTARGPKGEETPWQPLRVVIG-------SRALPENAHLS---------DPTV--- 281 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 DL L L +G +L+EGGA + S ++D Y + + Sbjct: 282 ----------VKFLDLVVALRYLWDKGCRYVLLEGGAGLITSAFERDIIDEFHDYSAPLF 331 Query: 320 IGEG 323 +G G Sbjct: 332 LGSG 335 >gi|300741401|ref|ZP_07071422.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567] gi|300380586|gb|EFJ77148.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567] Length = 374 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 102/329 (31%), Positives = 152/329 (46%), Gaps = 40/329 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA-- 63 D R MS A+ +R G+ NP V +I G V+ G G PHAE AL +A Sbjct: 3 DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADALAQARA 60 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + A YV+LEPC+H G++ PC+ I E GI +V D + SG G ++L Sbjct: 61 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSAQASG-GAEYLRSH 119 Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI+ M E + + EKR IT+K A + D I A S ITG ++ Sbjct: 120 GIVTTYMREFADDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIK 238 HL+R ++DA+++G T L D+P L R ++G + + P+R+++ Sbjct: 180 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVMG------------- 226 Query: 239 TALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 E D P V L R N + + + LL L RGV L++EG Sbjct: 227 -----------ETDIPSTYKVCGLGTRDPE-NYMQVYTHEPRVLLDELYSRGVRHLMIEG 274 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + F L+D ++ YR+ I++G G Sbjct: 275 GPGMVGLFTGEDLLDELVWYRAPILMGHG 303 >gi|119961067|ref|YP_947578.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1] gi|119947926|gb|ABM06837.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1] Length = 373 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 111/327 (33%), Positives = 157/327 (48%), Gaps = 35/327 (10%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 ++ ++ M AAL + G NP V +I+ DG + G G HAE A+ E Sbjct: 9 TAAESEAMDAALTAAL--AGPRGANPLVGAVILSPDGEQLATGYHRGAGTAHAEADAISE 66 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G T VTLEPC+H GR+ PCAQ II GI +V+ VDDP +G G + L Sbjct: 67 ARKKGIDIVGTTMVVTLEPCNHVGRTGPCAQAIIAAGIAKVIYAVDDPHDPAAG-GARTL 125 Query: 120 SQKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 S G+ V +E E + L+ + KR +TL IA + D+ I S I+ Sbjct: 126 SAAGVEVISGLEGEKALDLNRDWFDAVAAKRPFVTLHIAQTLDSRIAAVDGTSQWISCPE 185 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKI 236 S H LR DAILVG GTVL DDP LT R L H P+R ++ Sbjct: 186 SLADNHGLRGLIDAILVGTGTVLVDDPRLTARTPDGELSAHQPIRAVM------------ 233 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 D P A A R + ++ RD + L +L +GV L+VEGG+ Sbjct: 234 ------------GLRDVPQDA-AVRGNDGRFVHLPTRDPAEALGMLFEKGVRHLMVEGGS 280 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ +F+ + LVD +I+Y + ++G G Sbjct: 281 SILSTFLAADLVDELIVYLAPTLLGSG 307 >gi|5262786|emb|CAB45891.1| putative protein [Arabidopsis thaliana] gi|7268893|emb|CAB79096.1| putative protein [Arabidopsis thaliana] gi|45268463|gb|AAS55854.1| pyrimidine deaminase [synthetic construct] Length = 363 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 72/190 (37%), Positives = 110/190 (57%), Gaps = 7/190 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 11 DSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGEL 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI V Sbjct: 71 AENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGIDV 130 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184 +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 131 TVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK---- 186 Query: 185 LLRAQSDAIL 194 L + DAI+ Sbjct: 187 -LLQEYDAII 195 >gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa] gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa] Length = 592 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 105/370 (28%), Positives = 181/370 (48%), Gaps = 21/370 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S DA ++ A + + G +S +P+ C+I GIV G G G AEV A+E A Sbjct: 33 SLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAGEGYLYAQGTKAAEVLAVEAA 92 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ++G+TAY+ +EP +G + +++ GI RVVV + P + G ++ L +G Sbjct: 93 GGFSKGSTAYLNMEPGDCHGDQSAVSA-LVQAGITRVVVGIRHPLQHLHGNAIRSLRGQG 151 Query: 124 IIVD--------RMMESEGK--IFLHAYLT-RQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 + VD ++ME K + ++A L R + LK A++ D I + Sbjct: 152 LQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLDGKIATTSGHAT 211 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ S+N+V LR +SDAI+VG TV D+P LT R G H+P+RI++ F L Sbjct: 212 WISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGG--GHTPIRIVMTQTFNLPE 269 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 ++ + + ++ +++ K + ++ D + ++++ RG S+L Sbjct: 270 EANLWDISDVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILW 329 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGSDVC 351 E G +A S I+S ++ + + + +IG PSP+ E G +E M D DVC Sbjct: 330 ECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVE---MSQALDLI--DVC 384 Query: 352 LEYIGKNLCL 361 E +G ++ + Sbjct: 385 FEQVGPDMLI 394 >gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens] Length = 598 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/376 (27%), Positives = 175/376 (46%), Gaps = 24/376 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D+R + A + GL++ +P+ C+I V+G G G AEVQA+E A Sbjct: 22 SSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGPKVVGEGFLYAQGTKSAEVQAVERA 81 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+ ATAY+ LEP +G + + E G+ RVVV V P + G+ ++ L Q G Sbjct: 82 GELAKNATAYLNLEPGDCHGDD-SAVRALREAGVSRVVVGVPHPLQHLHGKAIKALHQGG 140 Query: 124 IIVD----RMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGC 169 V+ ++ES G A+ L R + LK A++ D I + Sbjct: 141 AKVEVVGQNLLES-GSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVDGKIAASTG 199 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ++ S+ +V +RA+SDAI+VG TV D+P LT R G H P+RI++ Sbjct: 200 HSTWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTTRQEG--GHLPVRIVMSRCLN 257 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L +D+ + + ++ + + + ++ D + ++ RG S Sbjct: 258 LPMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFDFLTPRAVMDYCYNRGYLS 317 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYFGS 348 +L E G ++ I S ++ ++ + S +IG P+P+ E G +E + + S Sbjct: 318 ILWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGELGMVE-----MTQALQLS 372 Query: 349 DVCLEYIGKNLCLQEL 364 DV E +G ++ + L Sbjct: 373 DVAFEQVGPDMLVTGL 388 >gi|281424669|ref|ZP_06255582.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302] gi|281401039|gb|EFB31870.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302] Length = 318 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/319 (32%), Positives = 143/319 (44%), Gaps = 46/319 (14%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG----ATAYVTLEPCSHYG 83 NP V +IV +IG G G HAEV A E AT YV+LEPCSHYG Sbjct: 24 NPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEKLLPEATIYVSLEPCSHYG 83 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA II GI+R V DP +V GRG+Q + GI +V +ME E ++ Sbjct: 84 KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVVVDVMEQECLALNRRFI 143 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQVHLLRAQSDAILVGIGT 199 T R +I LK A + + I S P+T + VH LRA+++A+LVG T Sbjct: 144 TFNALHRPYILLKWAQTANGFISKKDSPLQLSTPVTQML----VHQLRAENEAVLVGHTT 199 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 L D P L R +P RI+L P ++ + K +A I D ++A Sbjct: 200 FLTDHPRLDVR--QWSGRNPERIVLSP--TMAARKERPKGWTVAATI------DEIIAHL 249 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + +K SL+VEGG +FI L D I + + I+ Sbjct: 250 YAEKK-----------------------QSLVVEGGRKTLQAFIERGLWDEIRVETAPIM 286 Query: 320 IGEG-GIPSPLEEGYLEKN 337 I EG P ++EK Sbjct: 287 ITEGVAAPHFPTHAHIEKT 305 >gi|304383732|ref|ZP_07366191.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973] gi|304335256|gb|EFM01527.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973] Length = 315 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 109/363 (30%), Positives = 156/363 (42%), Gaps = 64/363 (17%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D ++M L+ + NP V +IV + +IG G G HAEV A Sbjct: 1 MSQATTDEKYMRRCLQLAECGRENAKPNPMVGAVIVVENRIIGEGYHVRYGEAHAEVNAF 60 Query: 61 EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + AT YV+LEPC+H G++PPC + IIE G+ RVVV DP +V GRG+ Sbjct: 61 ASICPKDAALLPSATLYVSLEPCAHQGKTPPCTRLIIEKGVGRVVVGCIDPFAKVQGRGI 120 Query: 117 QWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSV 172 + L + GI V ++E+E ++ Q R +I LK A + + + A S Sbjct: 121 RMLQEAGIEVTLGVLEAECLALNRRFIVCQHHCRPYIILKWAQTTNGFLDDNNHAMQLST 180 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 P T + VH LRA DAIL+G T + P LT R +P RI+L Sbjct: 181 PFTRML----VHQLRADVDAILIGRHTDEREHPALTVR--DWSGKNPRRIVLT------- 227 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 K NI+ +L+ L GV SLLV Sbjct: 228 ----------------------------HKLNIH----------QLMNDLYTEGVQSLLV 249 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGGA SF+N+ L D I + + +V+ G +P L KN + ++ Sbjct: 250 EGGATTHQSFLNAGLWDEIRVETAPVVVTNGTKAAP-----LPKNIQIANTKEYDGNLIT 304 Query: 353 EYI 355 YI Sbjct: 305 SYI 307 >gi|149276501|ref|ZP_01882645.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil [Pedobacter sp. BAL39] gi|149233021|gb|EDM38396.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil [Pedobacter sp. BAL39] Length = 332 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/309 (30%), Positives = 150/309 (48%), Gaps = 26/309 (8%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--------ARGATAY 73 +G S NP V C+IV +G +IG G G HAEV A+ ATAY Sbjct: 1 MGNVSPNPMVGCVIVSEGKIIGEGYHEQFGAAHAEVNAINSVWSAYPDQAAALLAQATAY 60 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 V+LEPC+H+G++PPCA +I+ +++VV+ DP V+G+G+ L+ GI ++ ++E Sbjct: 61 VSLEPCAHFGKTPPCADLLIKNQLQKVVIGNRDPFPDVNGKGIAKLNAAGIEVISGILEE 120 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + TR ++R I LK A + + I+ +SK VH R + DA Sbjct: 121 ECTALNIRFFTRISQQRPFIILKWANTANGYFAPKTDIPQWISSPLSKRLVHKWRTEEDA 180 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 LVG T + D+P+L+ R +P+RI++D ++ D + A A II E Sbjct: 181 TLVGKRTAIIDNPQLSAR--DWPGKNPVRILIDRRLEVPADRHLYDAA--AKTIIFNEVK 236 Query: 253 DPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 V + +I Y D+ +K+ L + S++++GG + + FI L Sbjct: 237 TAV--------DGHIHYIQMEDMQYYLPQKIAFQLYLMDIQSVIIDGGVNIINQFIAGGL 288 Query: 308 VDSIILYRS 316 D ++ S Sbjct: 289 WDEARVFTS 297 >gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera] Length = 587 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/324 (29%), Positives = 158/324 (48%), Gaps = 22/324 (6%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS +P+ C+I G V+G G G AEVQA+E AGE RGATAY+ +EP + Sbjct: 40 GFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCH 99 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA- 140 G + +++ GI R VV + P + L+ + +G+ VD + E + KI A Sbjct: 100 GDRTAVSA-LVKAGITRXVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEAL 158 Query: 141 ---------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 + R + LK A++ D I + + I+ S+ +V LR +SD Sbjct: 159 KSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSD 218 Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 AI+VG TV D+P+LT R G H P+RI++ L + + + + P I+VT+ Sbjct: 219 AIVVGGNTVRKDNPQLTARHGG--GHVPIRIVMSRTLNLPEVANLWDVSSV-PTIVVTQR 275 Query: 252 DDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 +F+K K + ++ D + + ++ RG S+L E G +A S I+S + Sbjct: 276 ---XARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGI 332 Query: 308 VDSIILYRSQIVIGEGGIPSPLEE 331 + + + + +IG P+P+ E Sbjct: 333 IHKVFAFVAPKIIGGKNAPTPVGE 356 >gi|282880496|ref|ZP_06289203.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS 5C-B1] gi|281305599|gb|EFA97652.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS 5C-B1] Length = 314 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 100/330 (30%), Positives = 148/330 (44%), Gaps = 54/330 (16%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M L+ ++ L NP V ++V +IG G G HAEV A Sbjct: 6 DAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVNAFAAV 65 Query: 64 GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ +T YV+LEPCSHYG++PPCA I+E ++RVV D +V GRG+ L Sbjct: 66 RQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGRGIDKL 125 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V ++E E K+ + R +I LK A + + I G ++ ++ Sbjct: 126 RKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDDNG-RAIALSSPF 184 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +K VH LR++ DAILVG T + P+L R SP+R++L H +S Sbjct: 185 TKMLVHKLRSEYDAILVGRVTDEREHPQLNVR--EWSGPSPLRLVL--HHGIS------- 233 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 L +LL L R + SLLVEGGA Sbjct: 234 ------------------------------------LPELLDDLYQRNLQSLLVEGGATT 257 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SFIN+ L D I + + + + G P+P Sbjct: 258 LQSFINANLWDEIRIETAPVTV-TNGTPAP 286 >gi|315607126|ref|ZP_07882130.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574] gi|315251180|gb|EFU31165.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574] Length = 322 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 103/328 (31%), Positives = 148/328 (45%), Gaps = 55/328 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +FM L+ +R NP V +IV DG +IG G G HAEV A Sbjct: 9 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVCP 68 Query: 66 EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + + Sbjct: 69 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 128 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V ++E E ++ R +ITLK A + D + G ++PI+ +K Sbjct: 129 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDHG-RALPISSPFTK 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LRA++DAILVG T + P L R P RI+L ++ Sbjct: 188 MLSHKLRAENDAILVGRVTEEREHPRLNVR--EWSGPDPERIVLGHGASVT--------- 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +LA + +K SLLVEGGA Sbjct: 237 -------------GILARLYEEKK-----------------------QSLLVEGGAQTLQ 260 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328 SF+++ L D + + + I +G+ G P+P Sbjct: 261 SFLDADLWDELRVETAPITVGD-GTPAP 287 >gi|299143100|ref|ZP_07036209.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298575428|gb|EFI47325.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 318 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/319 (32%), Positives = 144/319 (45%), Gaps = 46/319 (14%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG----ATAYVTLEPCSHYG 83 NP V +IV +IG G G HAEV A E AT YV+LEPCSHYG Sbjct: 24 NPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEKLLPEATIYVSLEPCSHYG 83 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA II GI+R V DP +V GRG+Q + GI +V +ME+E ++ Sbjct: 84 KTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAGIEVVVGVMEAECLALNRRFI 143 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQVHLLRAQSDAILVGIGT 199 T R +I LK A + + I S P+T + VH LRA+++AILVG T Sbjct: 144 TFNALHRPYILLKWAQTANGFISKKDSPLQLSTPVTQML----VHQLRAENEAILVGHTT 199 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 L D P L R +P RI+L P ++ + + +A I D V+A Sbjct: 200 FLTDHPRLDVR--QWSGRNPERIVLSP--TMAARKERPEGWTVAATI------DEVIAHL 249 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + +K SL+VEGG +FI L D I + + I+ Sbjct: 250 YAEKK-----------------------QSLIVEGGRKTLQAFIERGLWDEIRVETAPIM 286 Query: 320 IGEG-GIPSPLEEGYLEKN 337 I EG P ++EK Sbjct: 287 ITEGVAAPHFPTHAHIEKT 305 >gi|148358764|ref|YP_001249971.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Corby] gi|296106809|ref|YP_003618509.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] gi|148280537|gb|ABQ54625.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Corby] gi|295648710|gb|ADG24557.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] Length = 357 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/333 (28%), Positives = 148/333 (44%), Gaps = 11/333 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 4 QFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 T Y+TLEPC+H+G++PPC II GI VV DP+ + + L + GI V Sbjct: 64 EVTLYITLEPCNHWGKTPPCVDAIINHGIEEVVFAYFDPNPIVAKSNSSEKLREHGIQVR 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + F +Y + + +T+KIA + D IG + V ++ + + H +R Sbjct: 124 HIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA + Sbjct: 184 AASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCHIY- 241 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P A N + DL ++T L G + VE G A+ + Sbjct: 242 ----HQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALH 297 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 + LV LY +G I + ++G EK Sbjct: 298 SKGLVHRTYLYLVPGSLGHQAISAYQQQGIFEK 330 >gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/320 (28%), Positives = 150/320 (46%), Gaps = 14/320 (4%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS +P+ C+I G V+G G G AEVQA+E AGE RGATAY+ +EP + Sbjct: 40 GFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCH 99 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA- 140 G + +++ GI R VV + P + L+ + +G+ VD + E + KI A Sbjct: 100 GDRTAVSA-LVKAGITRAVVGIRHPLQHLRSHALRAMRSEGLQVDVLGEDLKSKIVEEAL 158 Query: 141 ---------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 + R + LK A++ D I + + I+ S+ +V LR +SD Sbjct: 159 KSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASWISSKESRYRVFELRGRSD 218 Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 AI+VG TV D+P LT R G H P+RI++ L + + + + +++ Sbjct: 219 AIVVGGNTVRKDNPRLTARHGG--GHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRG 276 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 K + ++ D + + ++ RG S+L E G +A S I+S ++ + Sbjct: 277 ARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKV 336 Query: 312 ILYRSQIVIGEGGIPSPLEE 331 + + +IG P+P+ E Sbjct: 337 FAFVAPKIIGGKNAPTPVGE 356 >gi|118617420|ref|YP_905752.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium ulcerans Agy99] gi|118569530|gb|ABL04281.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium ulcerans Agy99] Length = 339 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 43/309 (13%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +IV ++G V+G G T G HAEV AL +AG A GA A VT+EPC+H Sbjct: 25 GTTYPNPPVGAVIVDQEGWVVGIGGTQPSGGDHAEVVALRKAGGLAAGAIAVVTMEPCNH 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134 +G++PPC +IE + V+ V DP+ R+S GLQ + G++ D + Sbjct: 85 FGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGLQ--VRSGVLADHVAAGPL 142 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 + +LH +Q H+T K A S D A S I+ ++ +H RA SDAI+ Sbjct: 143 REWLH----KQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLHRRRAISDAIV 198 Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GTVL DDP LT RL+ L P+R+++ + ++K++ ND Sbjct: 199 VGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVL-------------ND 244 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 D + + ++L L R T +L+EGG +A +F+ + ++ I+ Sbjct: 245 D-----------ARTMMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRIL 291 Query: 313 LYRSQIVIG 321 Y + I++G Sbjct: 292 AYVAPILLG 300 >gi|283458202|ref|YP_003362820.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa DY-18] gi|283134235|dbj|BAI65000.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa DY-18] Length = 436 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 99/324 (30%), Positives = 150/324 (46%), Gaps = 27/324 (8%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63 A M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A Sbjct: 61 AEAMTLALQAARQ--GIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GA YV+LEPC+H GR+ PC+ + E GI + D D + G +L +G Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSD-DTENAAGGAAYLRSQG 177 Query: 124 IIVDRMMESEGKIFL--HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + V M E + + E+R IT K A + D I A S ITG ++ Sbjct: 178 VTVHAMEEFANASYQLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQ-EHSPMRIILDPHFKLSLDSKIIKT 239 HL+R ++DA+++G T L DDP L R NG + E P+R+++ K + Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVMG---KTEITENYRVR 294 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L P + DP N + D ++LL L RGV L++EGG + Sbjct: 295 GLNPPEGVEA---DPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 F +D ++ YR+ +++G+G Sbjct: 342 GLFAGEDFIDEMVWYRAPMIMGQG 365 >gi|255602376|ref|XP_002537841.1| riboflavin-specific deaminase, putative [Ricinus communis] gi|223514866|gb|EEF24541.1| riboflavin-specific deaminase, putative [Ricinus communis] Length = 110 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 57/108 (52%), Positives = 76/108 (70%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++S D +M+ ALR + + T+ NP V C+IVK+G ++G G G PHAEV AL Sbjct: 1 MQMTSQDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV + DP+ Sbjct: 61 RAAGEQARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPN 108 >gi|21672710|ref|NP_660777.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091139|sp|Q8K9A4|RIBD1_BUCAP RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase gi|21623353|gb|AAM67988.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 147 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ S+ TS NP+V C+IV++ ++G G G HAE+ AL AGE+ Sbjct: 3 DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G+TAY+TLEPC+H+G++PPC II+ GI+ V++ DP+ +VSG+G+ +L +KGI V Sbjct: 63 AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122 Query: 127 D-RMMESEGKIFLHAYLTR 144 +M E + + + R Sbjct: 123 KIGLMSKESQKYNKGFFKR 141 >gi|303327265|ref|ZP_07357707.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3] gi|302863253|gb|EFL86185.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3] Length = 385 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 97/331 (29%), Positives = 160/331 (48%), Gaps = 17/331 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 A FM A+ + NP+V ++++DG V+ RG G HAEV L++A G Sbjct: 7 APFMREAIALAEQGRWKACPNPTVGAVLLRDGRVVARGWHHEAGQDHAEVDCLKDAATRG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +G T VTLEPC+H G++PPC Q I++ GI RVV+ + DP+ + +G G L G+ Sbjct: 67 VDPKGCTLVVTLEPCNHQGKTPPCTQAILDAGISRVVMGLADPNPQAAG-GAARLRDTGM 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ + E+E + + +L Q R ++ LK+A + D I S I+ S+++V Sbjct: 126 EVLGPVCEAECRDLVADFLVWQSTDRPYVILKMAATLDGRIATRNGQSQWISCETSRHEV 185 Query: 184 HLLRA----QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIK 238 LRA A+LVG GT AD+P LT R +G P+ +L K D ++K Sbjct: 186 QELRAGLGLSGGAVLVGGGTFRADNPRLTAREDGYDGPQPLACLLTSRLPKPDADFHLLK 245 Query: 239 TALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGR-GVTSLL 291 + + A A R+ + ++ D +L L G +L Sbjct: 246 ERPGQTIFLASPAAAASTTAQALRQMGVRVLALGPGPQGGPDFPELFRALRRELGCPYVL 305 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 EGG +A + + + VD L+ + +++G+ Sbjct: 306 CEGGGRLALALLEAGFVDEFHLHLAPMILGD 336 >gi|167577925|ref|ZP_02370799.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis TXDOH] Length = 195 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQALGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTR 144 I+V++ ++E++ + + +R Sbjct: 125 IVVEQGLLEAQARELNIGFFSR 146 >gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens] Length = 521 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/372 (26%), Positives = 173/372 (46%), Gaps = 20/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D + + A + GLT+ +P+ C+I +G G G AEV A+E Sbjct: 34 LSSDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGPKSVGEGFLYAQGTKSAEVLAVER 93 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+ ATAY+ LEP +G + + + + G+ RVV+ + P + G+ + L Q Sbjct: 94 AGELAKNATAYLNLEPGDCHGDA-SAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQG 152 Query: 123 GIIVD----RMME--SEGKIFLHA-------YLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 G+ V+ ++E S + L A +L R + LK A++ D I + Sbjct: 153 GVHVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVDGKIATSTG 212 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ++ S+ +V RA+SDA++VG TV D+P LT R G + P+RI++ Sbjct: 213 HSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEG--GNLPVRIVMSRCLN 270 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L D+ + + +++ + +P K + ++ D + ++ RG S Sbjct: 271 LPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEHCYDRGFLS 330 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L E G +A I S + ++ + S +IG P+P+ E + + ++ SD Sbjct: 331 VLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQALQL----SD 386 Query: 350 VCLEYIGKNLCL 361 V E IG ++ + Sbjct: 387 VAFEQIGPDMLM 398 >gi|299115418|emb|CBN75583.1| riboflavin biosynthesis protein [Ectocarpus siliculosus] Length = 541 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 64/145 (44%), Positives = 89/145 (61%), Gaps = 1/145 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M AL + +G T NP+V C+I+ K+G V+G G G PHAEV A+ +AGE Sbjct: 70 DGAHMRRALELAAKGLGHTRPNPAVGCVILDKEGSVVGEGFHPRAGEPHAEVWAIRQAGE 129 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARG TAYV+LEPC+H+GR+PPC ++ECG+ RVV + DPD R +G GL+ L+ GI Sbjct: 130 RARGGTAYVSLEPCNHFGRTPPCTTALLECGVARVVAGMVDPDPRTAGSGLRRLADAGID 189 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150 V +E L++ +V +S Sbjct: 190 VSVGVEGAACHALNSAFVHRVSHKS 214 >gi|256831920|ref|YP_003160647.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM 20603] gi|256685451|gb|ACV08344.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM 20603] Length = 354 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 101/311 (32%), Positives = 142/311 (45%), Gaps = 43/311 (13%) Query: 23 GLTSTNPSVACLIVKD---GIVIG--RGVTAYGGCPHAEVQALE---EAGEEARGATAYV 74 G+ NP V +IV + + +G RG G HAEV AL + G AT YV Sbjct: 11 GVRGANPLVGAVIVDEHSGDVAVGHHRGR----GTAHAEVDALRCARDRGLRLDAATMYV 66 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 TLEPC+HYG +PPC I++ GI RVV+ +DP +G G L G++VD + Sbjct: 67 TLEPCNHYGVTPPCTDAILDAGIPRVVIAGEDPHDVAAG-GAHTLRAAGVVVDIVPLDAA 125 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 +LT Q E+R I KIA S D S ITG ++ H R DAI+ Sbjct: 126 VSLNERWLTAQRERRPFIRAKIAQSLDGFSAALDGTSQWITGPQAREYAHKQRHLVDAIV 185 Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GTVLAD P LT R + G Q P+R+ + H D+ I Sbjct: 186 VGTGTVLADQPTLTARYDPGGAQ---PLRVHMG-HTTTPPDAPI---------------- 225 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 R + ++ D L RG +L+EGG + +F+ + LVD + Sbjct: 226 --------RGADGRFVHLPTHDPNLAAHQLYERGARDILIEGGPRLIGAFLEAGLVDLLE 277 Query: 313 LYRSQIVIGEG 323 +Y + +++G G Sbjct: 278 VYTAPMLLGGG 288 >gi|183982231|ref|YP_001850522.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium marinum M] gi|183175557|gb|ACC40667.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium marinum M] Length = 339 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 43/309 (13%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +IV ++G V+G G T G HAEV AL +AG A GA A VT+EPC+H Sbjct: 25 GTTYPNPPVGAVIVDQEGRVVGIGGTQPSGGDHAEVVALRKAGGLAAGAIAVVTMEPCNH 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134 +G++PPC +IE + V+ V DP+ R+S GLQ + G++ D + Sbjct: 85 FGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGLQ--VRSGVLADHVAAGPL 142 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 + +LH +Q H+T K A S D A S I+ ++ +H RA SDAI+ Sbjct: 143 REWLH----KQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLHRRRAISDAIV 198 Query: 195 VGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GTVL DDP LT RL+ L P+R+++ + ++K++ ND Sbjct: 199 VGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVL-------------ND 244 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 D + + ++L L R T +L+EGG +A +F+ + ++ I+ Sbjct: 245 D-----------ARTMMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRIL 291 Query: 313 LYRSQIVIG 321 Y + I++G Sbjct: 292 AYVAPILLG 300 >gi|20139385|sp|P57533|RIBD1_BUCAI RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase Length = 147 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/139 (41%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+ Sbjct: 3 DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+G TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V Sbjct: 63 AQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 122 Query: 127 DR-MMESEGKIFLHAYLTR 144 ++ E K + + R Sbjct: 123 KTGLLSKESKQYNKGFFKR 141 >gi|288929017|ref|ZP_06422863.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317 str. F0108] gi|288330001|gb|EFC68586.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/367 (28%), Positives = 158/367 (43%), Gaps = 72/367 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M L+ +R + NP V +IV + +IG G + G HAEV A E Sbjct: 42 DERYMRRCLQLARCGLLGAKPNPMVGAVIVYNDRIIGEGYHIHCGEGHAEVNAFAAIRPE 101 Query: 67 AR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +T YV+LEPCSHYG++PPCA II G+ RVVV DP +V GRG++ L Q Sbjct: 102 DEPFLPHSTLYVSLEPCSHYGKTPPCADLIIRKGVPRVVVGCVDPFSKVQGRGIEKLRQA 161 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178 GI +V ++E ++ Q E+R ++ +K A + + I A S P T + Sbjct: 162 GIEVVVGVLEKACLALNRRFIVFQREQRPYVIMKWAQTANGFIDDHFHALAISTPFTQML 221 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S H LRA+ DAILVG T + P L R +P R++L H Sbjct: 222 S----HKLRAECDAILVGKTTDEREHPALNTR--HWWGENPRRLVLHRH----------- 264 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + + +LL L V +L+VEGGA V Sbjct: 265 ----------------------------------QPITQLLAQLYQDNVQTLIVEGGAIV 290 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +FI++ D I + + +G IP F ++++ + +V E+ Sbjct: 291 HQAFIDANCCDEIHRETAPFTVFDGTRTVAIPP---------KFQLIKQEIYDGNVLEEF 341 Query: 355 IGKNLCL 361 + + L Sbjct: 342 VSEYASL 348 >gi|83717489|ref|YP_439477.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|257142602|ref|ZP_05590864.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|83651314|gb|ABC35378.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 389 Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 62/142 (43%), Positives = 88/142 (61%), Gaps = 1/142 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDR-MMESEGKIFLHAYLTR 144 I+V++ ++E++ + + +R Sbjct: 125 IVVEQGLLEAQARELNIGFFSR 146 >gi|288800423|ref|ZP_06405881.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299 str. F0039] gi|288332636|gb|EFC71116.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299 str. F0039] Length = 341 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 102/304 (33%), Positives = 142/304 (46%), Gaps = 59/304 (19%) Query: 28 NPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGEEA--RGATAYVTLEPCSHYG 83 NP V +IV DG +IG G G HAEV A +A +E AT YV LEPCSH+G Sbjct: 54 NPMVGSVIVVDGRIIGEGYHIEYGKAHAEVNAFASVDAKDEHLLPKATLYVNLEPCSHFG 113 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 ++PPCA II G+++VVV DP V GRG++ L + G+ ++ ++E E ++ Sbjct: 114 KTPPCADLIISKGVKKVVVGCVDPYSEVRGRGIERLRKAGVKVLVGVLEKECLFLNRFFI 173 Query: 143 TRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 T +R +I LK A + D I G A S+P T + VH LRA+SDAILVG T Sbjct: 174 TSNTHQRPYIILKWAQTLDGFIDCDGEATAISIPFTSML----VHKLRAESDAILVGNNT 229 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + P L R Q+ P +++L KT Sbjct: 230 EKKERPRLNVRHWSGQD--PKKVVLSS-----------KTT------------------- 257 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 LK+LL+ L + SL+VEGG +SFI + L D I + + Sbjct: 258 ---------------LKELLSSLHAENIQSLMVEGGLKTHNSFIEADLWDEIHIETAPFT 302 Query: 320 IGEG 323 +G G Sbjct: 303 VGNG 306 >gi|159471802|ref|XP_001694045.1| predicted protein [Chlamydomonas reinhardtii] gi|158277212|gb|EDP02981.1| predicted protein [Chlamydomonas reinhardtii] Length = 121 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 60/120 (50%), Positives = 78/120 (65%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++ AL ++ G T NP+V C+IVKDG V+G G G PHAEV AL AG Sbjct: 2 DRAYILKALELAKRAQGKTHPNPAVGCVIVKDGKVVGEGYHPKAGMPHAEVYALRGAGNN 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPC+HYGR+PPC++ ++E + RVVV V DP+ V+ G+ L + GI V Sbjct: 62 AEGATAYVTLEPCNHYGRTPPCSRALVEAKVARVVVGVGDPNPLVAAEGIATLEKAGIQV 121 >gi|53722153|ref|YP_111138.1| riboflavin biosynthesis protein [Burkholderia pseudomallei K96243] gi|134283488|ref|ZP_01770188.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|217418752|ref|ZP_03450259.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|237509799|ref|ZP_04522514.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|254190205|ref|ZP_04896714.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|254263160|ref|ZP_04954025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] gi|52212567|emb|CAH38593.1| putative riboflavin biosynthesis protein [Burkholderia pseudomallei K96243] gi|134245237|gb|EBA45331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|157937882|gb|EDO93552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|217398056|gb|EEC38071.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|235002004|gb|EEP51428.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|254214162|gb|EET03547.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] Length = 395 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 125 IVVEQGL 131 >gi|126457369|ref|YP_001075539.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|242313881|ref|ZP_04812898.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|126231137|gb|ABN94550.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|242137120|gb|EES23523.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] Length = 395 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 125 IVVEQGL 131 >gi|167906520|ref|ZP_02493725.1| riboflavin biosynthesis protein [Burkholderia pseudomallei NCTC 13177] Length = 397 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 125 IVVEQGL 131 >gi|325685005|gb|EGD27144.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 280 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 85/253 (33%), Positives = 129/253 (50%), Gaps = 9/253 (3%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMES 132 +TLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+ V ++ Sbjct: 1 MTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLEVSTGLLAK 60 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E Y ++TLK A++ D+M+ G + ITG + +VH RA A Sbjct: 61 EASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKKGERTA-ITGAEAWTRVHQERAGYQA 119 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTE 250 +L+G+ T + DDP L + + H P+R++LD +L LD ++ A I+TE Sbjct: 120 VLIGLETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSDK-RAETWILTE 176 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N P K + I + + IL +GV S+ EGGA + S + + LV+ Sbjct: 177 N--PAFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESLLAAGLVND 234 Query: 311 IILYRSQIVIGEG 323 +I Y + +G G Sbjct: 235 VISYVAPSFLGRG 247 >gi|126442868|ref|YP_001062584.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|126222359|gb|ABN85864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] Length = 401 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 125 IVVEQGL 131 >gi|254193400|ref|ZP_04899834.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|169650153|gb|EDS82846.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] Length = 398 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 124 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 125 IVVEQGL 131 >gi|76819539|ref|YP_335244.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|76584012|gb|ABA53486.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] Length = 454 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 60/127 (47%), Positives = 80/127 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 64 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 123 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ G Sbjct: 124 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAG 183 Query: 124 IIVDRMM 130 I+V++ + Sbjct: 184 IVVEQGL 190 >gi|326693482|ref|ZP_08230487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc argentinum KCTC 3773] Length = 352 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 162/341 (47%), Gaps = 18/341 (5%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHY 82 T NP V +IVKD V+ G G HAE+ A A +A+G T YVTLEPC+ Sbjct: 22 TFENPRVGAVIVKDNQVLAVGWHERFGGAHAEINAFHHLGAAHDAQGGTLYVTLEPCAVR 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 G+ CA+ I + G+ RVV+ DP+ G G+Q L GI V + + + A+ Sbjct: 82 GKVAACAETIRDWGLARVVIGDLDPNPTTHGLGVQKLRAAGISVVVLDTDDSRQLNPAFY 141 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + + +I LK A S + + IT ++ VH RA+ AI+VG T + Sbjct: 142 QYHEQHQPYIQLKSAQSHNGYVSAVRGQRSKITDAVADLDVHRQRARHSAIIVGSETWVI 201 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D P LT R L P R+++ +L+ + L ++ TEN A ++ Sbjct: 202 DQPRLTVRDVMLTHQQPQRVVIYRRGRLAHEP----ATRLKDWLVYTEN-----AQFAQQ 252 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +N+ ++ L ++ L +G+ S++VEGG + SF+ ++L ++Y + ++ + Sbjct: 253 ENVELMTA---GLPGVMADLGRKGMQSVMVEGGPILITSFLQAQLWHECLIYTADRLLPD 309 Query: 323 G--GIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNL 359 G GI P +++ R+ Y +V CL+ K+L Sbjct: 310 GVRGIVLPQLPDDIQRIGHTQRQRYVNQEVATCLQASRKSL 350 >gi|260910408|ref|ZP_05917080.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472 str. F0295] gi|260635484|gb|EEX53502.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472 str. F0295] Length = 351 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 106/362 (29%), Positives = 157/362 (43%), Gaps = 68/362 (18%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R+M L+ +R + NP V +IV +IG G + G HAEV A Sbjct: 47 QTTDERYMRRCLQLARCGLLGAKPNPMVGAVIVYRDRIIGEGYHVHCGEGHAEVNAFAAV 106 Query: 64 GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E +T YV+LEPCSHYG++PPCA II + RVVV DP +V GRG++ L Sbjct: 107 RPEDESLLPQSTLYVSLEPCSHYGKTPPCADLIIRKEVARVVVGCIDPFAKVQGRGIEKL 166 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPIT 175 + GI +V ++E E ++ Q E+R ++ +K A + + I A S P T Sbjct: 167 RRAGIEVVVGVLEKECLALNRHFIVFQREQRPYVIMKWAQTANGFIDDHYRALAISTPFT 226 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 +S H LRA+ DAILVG T + P L R SP R++L Sbjct: 227 QMLS----HKLRAECDAILVGKTTDEREHPALNTR--HWWGKSPRRLVL----------- 269 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 R++ I +LL L V +L+VEGG Sbjct: 270 ------------------------HRQQAI----------AQLLAQLYQDNVQTLIVEGG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + V +FIN+ D I + + +G I P F ++++ F +V E Sbjct: 296 STVHQAFINANCCDEIHRETAPFTVFDGTKAIDIP-------PKFRLIKQEIFDGNVMEE 348 Query: 354 YI 355 ++ Sbjct: 349 FV 350 >gi|254497578|ref|ZP_05110366.1| riboflavin biosynthesis protein RibD [Legionella drancourtii LLAP12] gi|254353194|gb|EET11941.1| riboflavin biosynthesis protein RibD [Legionella drancourtii LLAP12] Length = 351 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/332 (26%), Positives = 152/332 (45%), Gaps = 10/332 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL +R G + NP V + V++G +I + G PHAE L + + Sbjct: 4 KFLLAALEQARLGQGFCAPNPCVGAVAVQNGNIIAQTCHHGAGTPHAEQLLLAQIPPKTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFII-ECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIV 126 G + Y++LEPC+H+GR+PPC II GI V+ DP+ + + L +GI V Sbjct: 64 GVSLYISLEPCNHWGRTPPCVDVIINHGGIEHVIFAYADPNPIVAQNNSTEKLRAQGIKV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +E F +Y + K+ +T+KIA + + IG V ++ + H + Sbjct: 124 THYPVAEITEFYKSYTYWTITKKPRVTVKIAQTLNGKIGRKVGERVVLSNSLCGEFTHQM 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA +D IL T+ D+P+L RL ++ P+ II D L+ +++I TA + Sbjct: 184 RAATDVILTSARTIQLDNPKLNVRLGAKEQAKPVAII-DRQLTLNNEAQIFSTAAHCHIY 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 E +++ K +++ + DL ++ L G + VE G A+ + Sbjct: 243 YCDERK-----ISYSKSSLHRMPMKNGVMDLSAVIRHLGELGYHDVWVEAGGAIFTALHQ 297 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 LV LY + + I + + G ++ Sbjct: 298 EGLVHRTYLYLVPTSLEQNAISAYQQSGLFDR 329 >gi|323699086|ref|ZP_08110998.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. ND132] gi|323459018|gb|EGB14883.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans ND132] Length = 364 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/334 (28%), Positives = 154/334 (46%), Gaps = 22/334 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ A+ + G T+ NP V ++V+DG+++ G G HAE + L +A G + Sbjct: 1 MARAVELAGRGRGATAPNPCVGAVLVRDGVIVAEGWHTRFGRLHAERECLADARRKGVDP 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPC+H+G++PPC + +IE G+ V V DP+ +G G++ L GI V Sbjct: 61 RGAAMYVTLEPCNHHGKTPPCTEALIEAGVAEVFVGTRDPNPVAAG-GVEKLRAHGIEVT 119 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E + + +L Q + +K+A + D I A P++ S +VH L Sbjct: 120 VGVLEQPCRDLIADFLLWQNTHSCYNIVKMAATLDGKIAAAARRPEPVSCPESLARVHDL 179 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIIL------DPHFKLSLDSKIIK 238 RA + A++VG T AD+P LTCR L P +I+ DP L + + Sbjct: 180 RALAGAVIVGGNTFYADNPSLTCRKKDLPPDFVQPFGVIVTSRLPDDPSRFTLLRERPER 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVE 293 + VL R++ ++ R +L R G L E Sbjct: 240 AIFMTSKTAAHSPQADVL----RRRGTSVWPMPGRAGSLVLACGFERLRYDCGCHYTLCE 295 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 GG A + I L D ++ + + ++G+ PS Sbjct: 296 GGGRFALALIEQGLADELVHFVAPRILGDDAAPS 329 >gi|219682366|ref|YP_002468750.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622099|gb|ACL30255.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086187|gb|ADP66269.1| riboflavin deaminase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086763|gb|ADP66844.1| riboflavin deaminase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087351|gb|ADP67431.1| riboflavin deaminase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087851|gb|ADP67930.1| riboflavin deaminase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 141 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHKQAGKNHAEINALIMAGEKAQGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V + Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120 Query: 130 MESEGKIFLHAYLTR 144 + E K + + R Sbjct: 121 LSKESKQYNKGFFKR 135 >gi|163784632|ref|ZP_02179466.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159880100|gb|EDP73770.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 279 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/241 (32%), Positives = 126/241 (52%), Gaps = 6/241 (2%) Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRS 150 IIE I++VVV DP+ V+G+G++ L + G+ ++ ++E + K + EKR Sbjct: 4 IIENKIKKVVVATLDPNPLVAGKGIKLLEEHGVEVITGVLEDKAKKLNEDFFVYIKEKRP 63 Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 I LK A + D I S ITG ++ H LR ++ A+LVG+GTVL D+P+LT R Sbjct: 64 FIHLKWAQTIDGKIATFTGSSKWITGEKARKYAHKLRKEASAVLVGVGTVLKDNPQLTVR 123 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 + + P+R+++D + K +D KI + V + D + +K+NI II Sbjct: 124 -HIKTDKQPVRVLIDKNLKTPIDYKIFDETVKTIVFVGKNADKEKIKNLSKKENIEIIKL 182 Query: 271 DCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +LK +L L R + +LVEGG + FI L D I ++ + ++GE GI Sbjct: 183 PLDKGKFELKDILNELYKRDIIHILVEGGKEIITQFIKENLFDKISVFIAPKIVGEEGIS 242 Query: 327 S 327 S Sbjct: 243 S 243 >gi|15617059|ref|NP_240272.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681811|ref|YP_002468197.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471513|ref|ZP_05635512.1| riboflavin deaminase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|25403627|pir||F84983 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) [imported] - Buchnera sp. (strain APS) gi|10039124|dbj|BAB13158.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624654|gb|ACL30809.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 141 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 85/135 (62%), Gaps = 1/135 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEKAQGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI V + Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120 Query: 130 MESEGKIFLHAYLTR 144 + E K + + R Sbjct: 121 LSKESKQYNKGFFKR 135 >gi|226200200|ref|ZP_03795745.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|225927708|gb|EEH23750.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] Length = 384 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 58/120 (48%), Positives = 78/120 (65%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I + +G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V++ + Sbjct: 61 TAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 >gi|116610344|gb|ABK03068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp. FB24] Length = 386 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/309 (30%), Positives = 147/309 (47%), Gaps = 33/309 (10%) Query: 22 VGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLE 77 +G NP V +++ DG + G G HAE A+ +AG + G+T VTLE Sbjct: 10 LGPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLE 69 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PC+H GR+ PCAQ II+ GI VV VDDP +G G L G+ V + + Sbjct: 70 PCNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFE 128 Query: 138 LH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L+ + + +R +TL IA + D+ I A S I+ S H LR++ DAILVG Sbjct: 129 LNRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVG 188 Query: 197 IGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 T+L D+P LT R + + P+R ++ + DD Sbjct: 189 TQTLLVDNPRLTARDASGKPAGNQPLRAVMG---------------------LRGIPDD- 226 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A + +++ RD + L L GV ++VEGG+++ +F+ + LVD +I+Y Sbjct: 227 ---AAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVY 283 Query: 315 RSQIVIGEG 323 + ++G G Sbjct: 284 LAPTLLGSG 292 >gi|304570635|ref|YP_831168.2| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp. FB24] Length = 407 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/308 (30%), Positives = 146/308 (47%), Gaps = 33/308 (10%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLEP 78 G NP V +++ DG + G G HAE A+ +AG + G+T VTLEP Sbjct: 32 GPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLEP 91 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138 C+H GR+ PCAQ II+ GI VV VDDP +G G L G+ V + + L Sbjct: 92 CNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFEL 150 Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + + + +R +TL IA + D+ I A S I+ S H LR++ DAILVG Sbjct: 151 NRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVGT 210 Query: 198 GTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 T+L D+P LT R + + P+R ++ + DD Sbjct: 211 QTLLVDNPRLTARDASGKPAGNQPLRAVMG---------------------LRGIPDD-- 247 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + +++ RD + L L GV ++VEGG+++ +F+ + LVD +I+Y Sbjct: 248 --AAIHGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVYL 305 Query: 316 SQIVIGEG 323 + ++G G Sbjct: 306 APTLLGSG 313 >gi|54401353|gb|AAV34447.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase [uncultured proteobacterium RedeBAC7D11] Length = 366 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 27/337 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D+ F+S A+ S G + P V C+IVKD +IGRG G HAE+ A+ + Sbjct: 3 DSFFISKAI--SLGLKGRFTAKPGVKVGCVIVKDNKIIGRGFYQKYGGSHAEINAINDVK 60 Query: 65 EEAR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 ++ + G+ +VTLEPCS G++ C + + +R++V DP + G+ Sbjct: 61 KKYKTNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIIVGAKDP----TQSGI 116 Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L + G V + + +I ++ + K+ + K+A+S D+ A ITG Sbjct: 117 NSLQRAGYEVKNLNNQQCQILNESFFHKVKSKKPFVRAKVAMSSDHKSVFASKQRKWITG 176 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSL 232 ++N V +LRA++D IL G GT+ D+P + R + + P R + KL+ Sbjct: 177 IPARNDVQILRAEADIILTGAGTINEDNPSMNVRSKKIIANENFIQPERYVFSNSLKLNW 236 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVT 288 + K V++ ++ P L+ K+I+++ D + K + + V Sbjct: 237 SAPFFKLP-GKKVVVTSKKSLPKLSQGI--KDISLMNLGKNNDSLNSKDFIKRISKLNVN 293 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++L+E G + SF + LVD I Y S +G+ + Sbjct: 294 NILIEAGPRLLGSFSDHDLVDEYIFYISPEKLGDKAL 330 >gi|270157224|ref|ZP_06185881.1| riboflavin biosynthesis protein RibD [Legionella longbeachae D-4968] gi|289164378|ref|YP_003454516.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae NSW150] gi|269989249|gb|EEZ95503.1| riboflavin biosynthesis protein RibD [Legionella longbeachae D-4968] gi|288857551|emb|CBJ11389.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae NSW150] Length = 357 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 88/310 (28%), Positives = 140/310 (45%), Gaps = 11/310 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +F+ AAL +R G + NP V + V++G +I + G PHAE L + + Sbjct: 4 KFLLAALEQARLGQGHCAPNPCVGAVAVQNGTIIAQAHHRGAGTPHAEQLLLTQIPPKTP 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD-VRVSGRGLQWLSQKGIIVD 127 G Y++LEPC+H+GR+PPC II G+ VV DP+ + + L +GI V Sbjct: 64 GICLYISLEPCNHWGRTPPCVDAIINHGVEEVVFGYLDPNPIVAQNNSSEKLRSRGIKVT 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +E F +Y + ++ IT+KIA + + IG A V ++ + + H +R Sbjct: 124 HYPVAEITEFYKSYTYWTLTQKPRITVKIAQTLNGKIGQAEGERVILSNALCEQFTHQMR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A +D +L TV D+P + RLN ++ + II D L+ +++I TA + Sbjct: 184 AAADVVLTTAKTVQLDNPRMNVRLNNEEQKKTIAII-DRQLVLNQEARIFSTAAHCHIFH 242 Query: 248 VTENDDPVLALAFR---KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 E F +KN DL ++ L G + VE G A+ + Sbjct: 243 CNEQKIFYPNSTFHPVPEKN------GVMDLNVVIKHLGALGYHDVWVEAGGALFSALHR 296 Query: 305 SRLVDSIILY 314 LV LY Sbjct: 297 EGLVHRTYLY 306 >gi|288926889|ref|ZP_06420789.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17] gi|288336328|gb|EFC74709.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17] Length = 286 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 83/224 (37%), Positives = 114/224 (50%), Gaps = 9/224 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +FM L+ +R NP V +IV DG +IG G G HAEV A Sbjct: 26 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVRP 85 Query: 66 EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + + Sbjct: 86 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 145 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V ++E E ++ R +ITLK A + D + G ++PI+ +K Sbjct: 146 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDHG-RALPISSPFTK 204 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL 224 H LRA++DAILVG T + P L R P RI+L Sbjct: 205 MLSHKLRAENDAILVGRVTEEREHPRLDVR--EWSGPDPERIVL 246 >gi|240172784|ref|ZP_04751443.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium kansasii ATCC 12478] Length = 339 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 102/309 (33%), Positives = 152/309 (49%), Gaps = 43/309 (13%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V +IV +G V+G G T G HAEV AL AG A GA A VT+EPC+H Sbjct: 25 GSTYPNPPVGAVIVDTEGRVVGVGGTQPTGGDHAEVVALRRAGGLAAGAIAVVTMEPCNH 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPD-------VRVSGRGLQWLSQKGIIVDRMMESEG 134 YG++PPC +IE + V+ V DP+ R+S G+Q + G++ D + Sbjct: 85 YGKTPPCVNALIEARVGTVIYGVADPNGIAGGGAGRLSAAGVQ--VRSGVLADHVAAGPL 142 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 + +LH +Q H+T K A S D A S I+ ++ +H RA +DAI+ Sbjct: 143 REWLH----KQRTGLPHVTWKYATSVDGRSAAADGSSQWISSEAARADLHRRRAIADAIV 198 Query: 195 VGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GTVLADDP LT RL L P+R+++ + ++K++ ND Sbjct: 199 VGTGTVLADDPALTARLPDGSLAPKQPLRVVVGTR-DIPPEAKVL-------------ND 244 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 D + + + + L+ LL T +L+EGG VA +F+ + I+ Sbjct: 245 DARTMVLRTHEPVEV-------LRALLDY------TDVLLEGGPTVAGAFLRCGAISRIL 291 Query: 313 LYRSQIVIG 321 Y + I++G Sbjct: 292 AYVAPILLG 300 >gi|329850574|ref|ZP_08265419.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] gi|328840889|gb|EGF90460.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] Length = 215 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 1/179 (0%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TLK+A + D I A S ITG ++ VH LRA DA+LVGI T L DDPELT Sbjct: 2 RPQVTLKLATTLDGRIATASGESRWITGEEARRCVHELRAGHDAVLVGIETALKDDPELT 61 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 RL+G + + P R++LD +L L +K+++TA + P +VT + LA + K I + Sbjct: 62 VRLHGYEGYQPTRVVLDSKGRLPLHAKMVQTARIIPTYVVTTGELSGEMLAAQVKAIKVP 121 Query: 269 YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 R DL L L G+ L VEGG VA +F+ + VD + +RS ++G G P Sbjct: 122 SKHQRVDLDAALAALSKVGIERLFVEGGGVVATAFLRAGYVDRLEWFRSSTILGGDGRP 180 >gi|294054578|ref|YP_003548236.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis DSM 45221] gi|293613911|gb|ADE54066.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis DSM 45221] Length = 369 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 96/332 (28%), Positives = 149/332 (44%), Gaps = 28/332 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68 +M+ AL+ + G T NP V +IV+DG ++ G G PHAE++AL G A Sbjct: 11 YMARALKLAAQGWGTTHPNPMVGAVIVEDGAIVAEGWHTAAGQPHAEIEALAALGRAPAS 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI---- 124 A YVTLEPCS GR+ C I+ GI+ VV+ DP+ +G GL L + G+ Sbjct: 71 DAVLYVTLEPCSTSGRTGACTDAILRAGIQNVVIGATDPNPDHAGNGLDLLREAGVHVQA 130 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I+++ + IF H ++ RQ I KIA + D + S +TG +++ V Sbjct: 131 GILEQECDDLNLIFNH-WIVRQ---SPLIAAKIATTLDGKFAASNGQSKWVTGPLARADV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH---------FKLSLDS 234 R AI V T +AD+P LT RL P+R + D + +L DS Sbjct: 187 MHWRRYFPAIAVTAQTAVADNPSLTSRLED-GTWCPLRFVFDRNLATLERLGDLQLYNDS 245 Query: 235 KIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 T ++ +E D P+L + R ++ D D+ + + + Sbjct: 246 FAENT-----IVCCSEASDPKPLLDVGIRCWQFPVVD-DHLDIDAFRRRCFEESIAGVYI 299 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 E G + + I +R VD + Y S + + G Sbjct: 300 EAGPGLMTAMIEARFVDYVFHYLSPRYMSDSG 331 >gi|260593448|ref|ZP_05858906.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319] gi|260534564|gb|EEX17181.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319] Length = 331 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/337 (30%), Positives = 147/337 (43%), Gaps = 56/337 (16%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M + D ++M L+ + + NP V +IV K+G +IG G G HAEV A Sbjct: 6 MKQADIDEKYMRRCLQLAYNGMLKAKPNPMVGAVIVSKEGRIIGEGYHVQCGKGHAEVNA 65 Query: 60 LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AT YV+LEPCSHYG++PPCA II G+ RVV DP V GRG Sbjct: 66 FASVKEVDSHLLHDATLYVSLEPCSHYGKTPPCADLIIRKGVHRVVCGCIDPFAEVHGRG 125 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP- 173 +Q L GI V ++E E ++T R ++ LK A + N A G +P Sbjct: 126 VQKLRDAGIEVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTMGN---PAYIGYLPS 182 Query: 174 -------ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226 I+ +K VH LRA++DAILVG T + P+LT R +P +I+ Sbjct: 183 KDYHPLNISTPFTKMLVHKLRAENDAILVGRTTNDLEHPQLTVR--EWSGKNPEKIV--- 237 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 LS +P + +L L Sbjct: 238 ---LSQQKSTSSAQYPSP-------------------------------QSVLDHLYQEK 263 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 SL+VEGGA+ SF+++ L D I + +++ +G Sbjct: 264 KQSLIVEGGASTLQSFLDAGLWDEIRVETGSLLVDKG 300 >gi|302345996|ref|YP_003814349.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica ATCC 25845] gi|302150238|gb|ADK96500.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica ATCC 25845] Length = 372 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 156/384 (40%), Gaps = 101/384 (26%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A Sbjct: 1 MKQEKTDEKYMRRCLQLARNGQQLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60 Query: 60 LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG Sbjct: 61 FASVRKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD------------- 161 ++ + + GI V ++E E ++T KR ++ LK A ++ Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAETESRLTNTPFNTPASP 180 Query: 162 ----------------------------------NMIGMAGCGSVP--------ITGFIS 179 N +A G++P I+ + Sbjct: 181 SPLPLPHREGSNHRDTPNDASIINGSKDDVTTCTNNSAVAYIGNLPDKDYQPLIISTPFT 240 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K VH +RA++DAILVG T + P+LT R SP +++L S +K + Sbjct: 241 KMLVHKMRAENDAILVGKTTEELEQPQLTVR--EWSGPSPEKLVL-----TSQPTKAGEY 293 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A A V L+ L SL+VEGGA Sbjct: 294 ATPAEV---------------------------------LSHLYAEKKQSLIVEGGAKTL 320 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 SF+++ L D I + + + EG Sbjct: 321 QSFLDAGLWDEIRIESAPFTVNEG 344 >gi|300781124|ref|ZP_07090978.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium ATCC 33030] gi|300532831|gb|EFK53892.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium ATCC 33030] Length = 361 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/321 (30%), Positives = 144/321 (44%), Gaps = 53/321 (16%) Query: 23 GLTSTNPSVACLIVKD-------------GIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 G TS NP V C+I ++ +I G T G HAE+ AL+ A E+ Sbjct: 28 GTTSPNPPVGCVIYREVEPVIVDDWDQAEPEIIATGGTEPAGGRHAEIVALDAAREKVGD 87 Query: 68 ---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 RGA VTLEPC+H GR+ PCA+ I+ GI +VV DP+ SG G ++L + G+ Sbjct: 88 DGLRGACMLVTLEPCNHTGRTGPCAEAIVAAGIAKVVYIEPDPNPEASG-GAEYLRRHGV 146 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V ++ L +LT R +T K A + D + S ITG I++ VH Sbjct: 147 EVHH--KTYDVTGLAPWLTAVRHGRVSVTAKFAATLDGFVAAPDGSSQWITGPITREWVH 204 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 R++ DAI++G GT LAD+P LT R L E P R+++ Sbjct: 205 EDRSRVDAIIIGTGTALADNPSLTARKADGSLAERQPRRVVVGTRE-------------- 250 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V E + + L F + ++ L L G ++VEGG + S Sbjct: 251 -----VPEGN--LTRLGFERYATP---------QEALDALWETGARHVIVEGGPTLMRSV 294 Query: 303 INSRLVDSIILYRSQIVIGEG 323 +VD+I Y + ++ G G Sbjct: 295 FELGVVDAIHAYVAPMLFGAG 315 >gi|288803443|ref|ZP_06408875.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica D18] gi|288334053|gb|EFC72496.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica D18] Length = 365 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 107/377 (28%), Positives = 153/377 (40%), Gaps = 94/377 (24%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A Sbjct: 1 MKQEETDEKYMRRCLQLARNGQLLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60 Query: 60 LEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG Sbjct: 61 FASVSKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA----------------- 157 ++ + + GI V ++E E ++T KR ++ LK A Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAEASSPSPLPLPQREGSN 180 Query: 158 --------------VSQDNMIGMAGCGSVPITGFI-----------------SKNQVHLL 186 ++ +N C P +I +K VH + Sbjct: 181 HRDSPNNSEKVIANITIENRNNRIYCNYKPSVAYIGNLPGKDYQPLIISTPFTKMLVHKM 240 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++DAILVG T + P+LT R + P +P KL L S+ K A Sbjct: 241 RAENDAILVGKTTEELEQPQLTVR----EWSGP-----NPE-KLVLTSQPTKAGEYA--- 287 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 ++L+ L SL+VEGGA SF+++ Sbjct: 288 ---------------------------TPAEVLSHLYAEKQQSLIVEGGAKTLQSFLDAG 320 Query: 307 LVDSIILYRSQIVIGEG 323 L D I + + + +G Sbjct: 321 LWDEIRIESAPFTVNKG 337 >gi|224067884|ref|XP_002302581.1| predicted protein [Populus trichocarpa] gi|222844307|gb|EEE81854.1| predicted protein [Populus trichocarpa] Length = 378 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 86/289 (29%), Positives = 153/289 (52%), Gaps = 17/289 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M + +R +G TS NP V C+IVKDG ++G G G PHAEV AL +A + A Sbjct: 30 YMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAEDLAEN 89 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 ATAYV+LEPC+HYGR+PPC++ +++ +++VV+ + DP+ V+ RG+Q L GI V Sbjct: 90 ATAYVSLEPCNHYGRTPPCSEALVKAKVKKVVIGMIDPNPIVASRGVQRLRDAGINVVVG 149 Query: 130 MESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVHLLR 187 +E E K A++ + + +TL+ ++S + +++ G G G+ S+ L Sbjct: 150 VEEELCKRLNEAFIHKMLTGSPFVTLRYSLSVNGHLVNQLGEGVTDTGGYYSQ-----LL 204 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+++ ++ P + G + P+ I++ + ++ + V I Sbjct: 205 QEYDAVILS-ASLTGSSPFPASQEPGANQ--PLWILMAGGPSSPIQIPLLTEEAASKVTI 261 Query: 248 VTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 T+ +++P + KK I + D +L +L RG+ S+L++ Sbjct: 262 FTDKEASEEPETS----KKGIETVVLDKINLNAILEYCKSRGLCSVLMD 306 >gi|307069511|ref|YP_003877988.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia insecticola CARI] gi|306482771|gb|ADM89642.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia insecticola CARI] Length = 346 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 87/318 (27%), Positives = 151/318 (47%), Gaps = 14/318 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ V +S NPSV C I K+ + G T + G HAE+ AL+ Sbjct: 1 MLKAIYLSKKAVFFSSPNPSVGCYIKKNIL----GYTKFKGYNHAEINALKNIKNNK-KI 55 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129 Y+TLEPC++ G + C +++I I ++ +C D + + ++ L K I ++ + Sbjct: 56 NIYLTLEPCNYLGLTNSCLEYLININIYKIFICKLDNNKNIYNNSIKILKLKNIKINLGL 115 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + K Y + K+ I LKIA S DN I + S IT IS+ L R + Sbjct: 116 LNKIYKKINKGYFYKVKNKKPLIRLKIASSIDNKICLKNKKSKWITNKISRINNQLWRIK 175 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S AI+ GIGT+L D+ + R N + I++D K+SL+S +K +II T Sbjct: 176 SCAIITGIGTILKDNSFINIR-NFKKIKDIKNILIDTKLKISLNSNYLKNNY---IIIFT 231 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + +K I I + K+++ + + + E G ++ ++ I+ Sbjct: 232 NSKNKKKIRKLKKLGIKIFKIKLNNKKLNFKRIIEKISFLKINEIQFESGFSINNTLISL 291 Query: 306 RLVDSIILYRSQIVIGEG 323 ++ I++Y S I++G+ Sbjct: 292 NKINEILIYLSPIILGKS 309 >gi|319948957|ref|ZP_08023062.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4] gi|319437395|gb|EFV92410.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4] Length = 288 Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 84/256 (32%), Positives = 123/256 (48%), Gaps = 34/256 (13%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 +TLEPC H+GR+ PC + G+ RVV V DP+ +G G L + G+ V R + E Sbjct: 1 MTLEPCDHHGRTGPCTARALAAGVARVVYAVSDPNPVAAG-GADTLRRAGVDVSRGDDDE 59 Query: 134 ----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 G L A+L RQ R +T K A S D + A S ITG +S++ H R + Sbjct: 60 VRAAGDGPLRAWLHRQAHGRPFVTWKYAASLDGRVAAADGSSRWITGPVSRHHAHARRQE 119 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA++VG GT+ ADDP LT RL+ + P+R ++ LS + T Sbjct: 120 IDALVVGTGTLTADDPALTARLDDGRPAPRQPLRAVM----GLS----AVPT-------- 163 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 A R + + RD + L +L V +LVEGG +A +F+ + L Sbjct: 164 ---------GAAVRGDDGRFRHLATRDPAEALAMLG--DVCHVLVEGGPRLAGAFLAAGL 212 Query: 308 VDSIILYRSQIVIGEG 323 VD + Y + +V+G G Sbjct: 213 VDEVDAYIAPLVLGGG 228 >gi|227488843|ref|ZP_03919159.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091265|gb|EEI26577.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 277 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 88/274 (32%), Positives = 124/274 (45%), Gaps = 46/274 (16%) Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL AGE+ARGATAYVTLEPC+H GR+ PC+ ++E GI VV D + G + Sbjct: 2 ALRAAGEDARGATAYVTLEPCNHTGRTGPCSHALVEAGIATVVYLTPDTSTPEAAGGGDY 61 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L G+ V+ + + G L +L Q R T+K+A + D S ITG Sbjct: 62 LKSHGVEVEYLPVAVGA--LTPWLFAQRNHRPMFTVKVAHTIDGYAAALDGTSQWITGET 119 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILD----PHFKLSL 232 ++ H R++ DAILVG GT LAD+P LT R L E+ P +I+ P Sbjct: 120 ARAYAHRDRSRRDAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRPVPRDYHLY 179 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 ++ I+ L ++ + ND +LV Sbjct: 180 ETGFIQVDTLEELVQLPYND-------------------------------------ILV 202 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 EGG V + + LVD+I Y + V+G GIP Sbjct: 203 EGGPGVLSTLFTNDLVDTIHSYVASAVLG-AGIP 235 >gi|163841087|ref|YP_001625492.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC 33209] gi|162954563|gb|ABY24078.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC 33209] Length = 369 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 94/303 (31%), Positives = 141/303 (46%), Gaps = 26/303 (8%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCS 80 G+ NP V +I+ DG ++ G A G PHAE AL + ++ GAT TLEPCS Sbjct: 17 GIRGANPLVGAVILGADGELLAAGHHAGAGTPHAEALALAQLEPSQSAGATLVCTLEPCS 76 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 H GR+P C+Q II+ GI VV DDPD +G + + ++ + +EG Sbjct: 77 HVGRTPACSQAIIDAGITTVVYAADDPDQNAAGGAARLRAAGITVISDVRAAEGHELNRR 136 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + R + ++ I + D I S I+ S H R ++ A+LVG GT+ Sbjct: 137 WFAAVRDSRPYTSVHIMQTIDGRIAAVDGSSQWISCPESLAAKHARRTRAHAMLVGTGTI 196 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 LAD+P LT R DP +L + ++ AL + V A A Sbjct: 197 LADNPRLTAR--------------DPDGQL-FARQPLRVAL---------GNREVPADAA 232 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + + D K L +GV L+VEGGA V +F+ + LVD +I+ + V+ Sbjct: 233 IRGDGRWLQVKDHDALKAGRTLRAQGVDHLIVEGGAQVTAAFLRADLVDELIVSIAPTVL 292 Query: 321 GEG 323 G G Sbjct: 293 GSG 295 >gi|282877095|ref|ZP_06285937.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC 35310] gi|281300777|gb|EFA93104.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC 35310] Length = 326 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 103/358 (28%), Positives = 153/358 (42%), Gaps = 64/358 (17%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M L+ ++ L NP V +IV G ++G G G HAEV A Sbjct: 1 MNQEELDKMYMRRCLQLAKQGRALAKPNPMVGAVIVYQGRILGEGYHVRCGQAHAEVNAF 60 Query: 61 EEAGEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +T YV+LEPC H G++PPCA II ++RVV DP +V GRG+ Sbjct: 61 ASVRPADEPLLPQSTLYVSLEPCCHTGKTPPCADLIIRKHVKRVVCGCIDPFAQVHGRGV 120 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSV 172 Q L GI V +++ E + + + +R +I LK A + + + G S Sbjct: 121 QKLRDAGIDVTVGVLDEECRALNRQFNVYNMLERPYILLKWAQTINGFLDADGEPLALST 180 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 P T + VH LRAQ DAILVG T + P LT R P+R++L Sbjct: 181 PFTQML----VHRLRAQYDAILVGRVTDEREHPRLTVR--EWSGPDPLRLVLR------- 227 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 D L +L+ L + V SL+V Sbjct: 228 --------------------------------------DGITLPQLMADLHQQHVQSLMV 249 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 EGGA SFI++ L D I + S++++ GG +P+ L + ++R+ + +V Sbjct: 250 EGGAKTLQSFIDAGLWDEIRVETSRLLV-SGGTKAPV----LPAGLILLQREVYDGNV 302 >gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii] gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii] Length = 561 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 96/364 (26%), Positives = 166/364 (45%), Gaps = 18/364 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD+ M A + G T+ +P+ AC+I + V+G G AE+QA+E A Sbjct: 6 AGFDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMA 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE +RGATAY+ LEP +G + + + G+ RVVV + P SG+ + L G Sbjct: 66 GELSRGATAYLNLEPGDCHGDD-TAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLG 124 Query: 124 IIVDRMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 I VD + + F A+ L R LK A++ D I + + Sbjct: 125 IPVDVLEKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLDGKIAASTGHASW 184 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 ++ +S+ +V R +SDAI+VG TV D+P LT R G H P+R+++ L L+ Sbjct: 185 VSSKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEG--GHLPVRVVMSRTLNLPLE 242 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + +++ + + ++ D K ++ RG S+L E Sbjct: 243 LHLWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYERGFLSVLWE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEK----NFMCVRRDYFGS 348 G A++ + + ++ +I + + +IG P+P+ E G +E N + V + G Sbjct: 303 CGGALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLLDVTFEQVGP 362 Query: 349 DVCL 352 D+ + Sbjct: 363 DMLV 366 >gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii] gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii] Length = 563 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 89/336 (26%), Positives = 155/336 (46%), Gaps = 13/336 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD+ M A + G T+ +P+ AC+I + V+G G AE+QA+E AGE Sbjct: 8 FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +RGATAY+ LEP +G + + + G+ RVVV + P SG+ + L GI Sbjct: 68 LSRGATAYLNLEPGDCHGDD-TAIKALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126 Query: 126 VDRMMESEGKIFLHAY----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 VD + + F A+ L R + LK A++ D I + + ++ Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLDGKIAASTGHASWVS 186 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 +S+ +V R +SDAI+VG TV D+P LT R G H P+R+++ L L+ Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREG--GHLPVRVVMSRTLNLPLELH 244 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + + +++ + + ++ D K ++ RG ++L E G Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYERGFLTVLWECG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 A++ + + ++ +I + + +IG P+P+ E Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGE 340 >gi|256824048|ref|YP_003148008.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM 20547] gi|256687441|gb|ACV05243.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM 20547] Length = 461 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/269 (31%), Positives = 127/269 (47%), Gaps = 16/269 (5%) Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATA VTLEPC+H GR+ PCA+ +++ I RVV+ DP SG G + L G+ +V Sbjct: 132 GATAVVTLEPCNHTGRTGPCAEALLDAEIARVVIAQSDPTPLASG-GAERLRTAGVEVVT 190 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ESE + R +TLK+A + D + A S ITG ++ VH R Sbjct: 191 GVLESEATALNRWFTASARLGRPVVTLKLASTLDGRVAAADGTSQWITGGPARLDVHRQR 250 Query: 188 AQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLSLDSK 235 A + AI+VG GT LADDP+LT RL + E P Sbjct: 251 ATAGAIVVGTGTALADDPKLTVRLPAAELAAPAVESDPAPEAGPAPSATPSTDAAPAPDA 310 Query: 236 IIKTALLAPV-IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 P+ ++V + P A F I D ++L +L RG+ + +EG Sbjct: 311 TTAPTPRQPLRVVVGTRELPASARVF-DDAAETISLRTHDPAEVLRVLSDRGIHHVWLEG 369 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G +A +F+ + LVD ++ Y + ++G G Sbjct: 370 GPTLAAAFLRAGLVDRLVHYLAPALLGAG 398 >gi|301055607|ref|YP_003793818.1| riboflavin biosynthesis protein contains N-terminal domain of RibD [Bacillus anthracis CI] gi|300377776|gb|ADK06680.1| riboflavin biosynthesis protein contains N-terminal domain of RibD [Bacillus cereus biovar anthracis str. CI] Length = 166 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 60/147 (40%), Positives = 89/147 (60%), Gaps = 2/147 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHI 152 ++E+E + L+ Y E + I Sbjct: 123 TTGVLEAEA-VLLNRYFFSLHENETSI 148 >gi|220912436|ref|YP_002487745.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus A6] gi|219859314|gb|ACL39656.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus A6] Length = 373 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 97/308 (31%), Positives = 138/308 (44%), Gaps = 33/308 (10%) Query: 23 GLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEP 78 G NP V ++V DG + G G HAE A+ EAG + G T VTLEP Sbjct: 29 GPRGANPLVGAVVVSPDGRELATGYHRGAGTAHAEADAVARAREAGVDLAGCTMVVTLEP 88 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138 C+H GR+ PC + II GI VV VDDP +G G L GI V + + + L Sbjct: 89 CNHVGRTGPCTEAIIAAGITDVVYAVDDPHDPAAG-GAATLRNAGISVRSGLAAAESLEL 147 Query: 139 H-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + + EKR TL IA + D I S I+ S H +R++ DAILVG Sbjct: 148 NRRWFEAVAEKRPFTTLHIAQTLDGRIAAEDGTSQWISSPESLADNHGIRSRIDAILVGT 207 Query: 198 GTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 TV D+P L R P+R + + L A+L DD + Sbjct: 208 QTVAVDNPRLNARDASGNPAARQPVRAV------MGLRDIPEHAAIL--------GDDGL 253 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ RD ++ LT L G ++VEGG+ + +F+ + LVD +I+Y Sbjct: 254 -----------AVHLPTRDPREALTTLYASGTRHVMVEGGSRILSAFLTAGLVDELIVYL 302 Query: 316 SQIVIGEG 323 + ++G G Sbjct: 303 APTLLGSG 310 >gi|308803240|ref|XP_003078933.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS) [Ostreococcus tauri] gi|116057386|emb|CAL51813.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS) [Ostreococcus tauri] Length = 207 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 58/101 (57%), Positives = 73/101 (72%), Gaps = 2/101 (1%) Query: 28 NPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 NP V C++V + +V+GRG G PHAEV AL AGE ARGATAYVTLEPC+H+GR+ Sbjct: 80 NPLVGCVVVDPRADVVVGRGFHPRAGEPHAEVFALRAAGELARGATAYVTLEPCNHFGRT 139 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 PPCA+ +++ G++RVVV DPD RVSG G+Q L GI V Sbjct: 140 PPCARALVDAGVKRVVVGFVDPDPRVSGGGIQTLLDAGIDV 180 >gi|329891051|ref|ZP_08269394.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] gi|328846352|gb|EGF95916.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] Length = 209 Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 65/153 (42%), Positives = 87/153 (56%), Gaps = 4/153 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA FM A+ + +G T NP+V C++VKDG+V+ TA GG PHAE QA+ EAGE Sbjct: 7 DAVFMRRAIDLALSRMGETWPNPAVGCVLVKDGVVLAEAATAPGGRPHAEEQAVPEAGEA 66 Query: 67 ARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +GATAYVTLEPC GR CA F+ E G+ RVV+ DP SGRG + L G+ Sbjct: 67 VKGATAYVTLEPCGARSSGRK-SCAHFLAEAGVERVVIAALDPSPFASGRGTERLRHSGL 125 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKI 156 V+ ++ E + +L R R + + I Sbjct: 126 TVETGLLCEEASVLSEGFLHRLETGRPMVRVSI 158 >gi|307328879|ref|ZP_07608049.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] gi|306885544|gb|EFN16560.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 90/163 (55%), Gaps = 3/163 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 +S + M A+ S +G TS NP V C+I+ +DG+ +G G G HAEV AL Sbjct: 2 ATSNELTAMRRAIAISAQGLGTTSPNPPVGCVILDRDGVPVGEGYHLRKGDHHAEVNALT 61 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE A G TA VTLEPC+H+GR+PPC Q +I+ + RV++ V DP R G G L Q Sbjct: 62 AAGERAEGGTAVVTLEPCNHHGRTPPCRQALIDAKVSRVLMAVMDPTSRGEG-GAAVLEQ 120 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 GI V+R ++E E + L +L R HIT V D Sbjct: 121 AGIEVERGVLEQEALLVLGPWLHSLRTGRPHITWAYTVGADGF 163 >gi|256378033|ref|YP_003101693.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM 43827] gi|255922336|gb|ACU37847.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM 43827] Length = 341 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 101/300 (33%), Positives = 140/300 (46%), Gaps = 30/300 (10%) Query: 28 NPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C L+ DG V+ G G HAE AL EAG ARG TA VTLEPC+H GR+ Sbjct: 25 NPRVGCVLLADDGTVVAEGHHRGAGTAHAEADALAEAGAAARGTTAVVTLEPCNHTGRTG 84 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145 PCA+ ++E G+RRVV DP+ +G G + L GI V+ +M + A++ Sbjct: 85 PCARALVEAGVRRVVFAQSDPNPVATG-GTRTLRDAGIEVEHGLMADRARALNRAWVFGV 143 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 R +T K A S D A S I+ ++ VH LRA D +LVG T + DDP Sbjct: 144 EHGRPLVTWKFAASLDGRSAAADGTSRWISNSAARADVHRLRAGCDVVLVGAETAVVDDP 203 Query: 206 ELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 LT R + H P+R +L E + P F Sbjct: 204 RLTARGPDDAPLAHQPLRAVLG------------------------ERELPPTLRLF-DG 238 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + + RD + L L G + +EGG VA +F+ + LVD I+ Y + +++G G Sbjct: 239 SAEVAQLRTRDPRAALAELFELGRRHVFLEGGPTVAAAFLRAGLVDEIVAYVAPVLLGAG 298 >gi|145346176|ref|XP_001417569.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577796|gb|ABO95862.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 147 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 64/126 (50%), Positives = 82/126 (65%), Gaps = 3/126 (2%) Query: 28 NPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 NP V C++V ++ +V+G G G PHAEV AL AGE ARGATAYVTLEPC+HYGR+ Sbjct: 19 NPRVGCVVVDAREDVVVGEGYHPKAGEPHAEVFALRAAGELARGATAYVTLEPCNHYGRT 78 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA-YLTR 144 PPCA+ +++ G+ RVVV DPD RVSG G+Q L GI V E ++A ++ R Sbjct: 79 PPCARALVDAGVARVVVGFIDPDPRVSGGGIQTLLDAGIEVAVGCEEALCREINADFIAR 138 Query: 145 QVEKRS 150 QV R Sbjct: 139 QVAARD 144 >gi|126640314|ref|YP_001083298.1| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978] Length = 288 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 29/264 (10%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMES 132 +TLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI V+ + E Sbjct: 1 MTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICED 60 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 +L ++ LK+A S D MA S ITG ++ V RA S A Sbjct: 61 LAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGA 120 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAP 244 ++ GI TV+ DD C+LN H+ P R+ILD +L L +KI+ Sbjct: 121 VITGIDTVIVDD----CQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKIL------- 169 Query: 245 VIIVTENDDPVLALA-FRKK--NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 EN + V+ + +R++ ++ +I + + LK LL L + + +LVE GA ++ Sbjct: 170 -----ENPETVMVMGPYRQELADLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEAGATLST 224 Query: 301 SFINSRLVDSIILYRSQIVIGEGG 324 +F+ LVD +I Y + ++G+ Sbjct: 225 AFLQEGLVDEMISYVAPTLLGQSA 248 >gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor] gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor] Length = 522 Score = 112 bits (280), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 88/311 (28%), Positives = 143/311 (45%), Gaps = 22/311 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQ 58 DA + A + GLTS +P+ C+I + D V+G G G P AE+ Sbjct: 54 DALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAELL 113 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A +EAGE A G+TAY+ LEP +G + +++ GI RVVV + P + G+ +Q Sbjct: 114 AAQEAGEHACGSTAYLNLEPGDCFGDNTAVGS-LVQAGITRVVVGLRHPLKHLRGKAIQA 172 Query: 119 LSQKGIIVDRMMES-EGKIFLHA----------YLTRQVEKRSHITLKIAVSQDNMIGMA 167 L +GI VD + E + K+F A L R LK A++ D I + Sbjct: 173 LRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTADGKIAAS 232 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227 + I+G S+ +V LR +SDA++VG TV DDP LT R ++ H P+RI++ Sbjct: 233 SGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTAR--HVKGHVPVRIVMSQS 290 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 L ++ + ++ K + ++ D + + +++ RG Sbjct: 291 LNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPRNVMSYCYDRGY 350 Query: 288 TSLLVEGGAAV 298 ++L E G + Sbjct: 351 LAVLWECGGTL 361 >gi|294142852|ref|YP_003558830.1| riboflavin-specific deaminase [Shewanella violacea DSS12] gi|32562925|dbj|BAC79238.1| putative riboflavin deaminase [Shewanella violacea] gi|293329321|dbj|BAJ04052.1| riboflavin-specific deaminase, putative [Shewanella violacea DSS12] Length = 143 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/140 (44%), Positives = 84/140 (60%), Gaps = 1/140 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD +FM AL+ S+ + NP V C++V D VI G T G HAE++AL Sbjct: 3 FDKKFMLRALKLSQTALPECQPNPPVGCVLVLDDQVIAEGYTQKIGGNHAEMEALNAYDG 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 TAYVTLEPCS GR+P CA +++ GI+RVVV + DPD+R +G+G+Q L ++GI Sbjct: 63 SMGLVTAYVTLEPCSFVGRTPACASTLVKSGIKRVVVAILDPDLRNNGKGIQTLEKEGIK 122 Query: 126 VDRMMES-EGKIFLHAYLTR 144 VD + S E FL YL + Sbjct: 123 VDIGVASKEVSEFLSPYLGK 142 >gi|229526073|ref|ZP_04415477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae bv. albensis VL426] gi|229336231|gb|EEO01249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae bv. albensis VL426] Length = 141 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 81/135 (60%), Gaps = 1/135 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL S++ + NP V C++VK G ++ G T G HAEVQALE + Sbjct: 6 MLRALEVSKFALPNCLPNPPVGCVLVKGGSIVAEGFTQKIGGNHAEVQALEAYSGDMDSV 65 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD+R SGRG+Q L Q GI VD + Sbjct: 66 TAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDLRNSGRGIQILEQAGIQVDIGL 125 Query: 130 MESEGKIFLHAYLTR 144 S+ FL YL + Sbjct: 126 CSSQVSAFLDPYLGK 140 >gi|291334222|gb|ADD93888.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase [uncultured marine bacterium MedDCM-OCT-S08-C1463] Length = 348 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/312 (26%), Positives = 142/312 (45%), Gaps = 33/312 (10%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--------GATAYVTLEPCSHY 82 V C+IVK+ +IGRG G HAE+ A+ + E+ + G+ +VTLEPCS Sbjct: 27 VGCVIVKENRIIGRGFYEKYGGSHAEINAINDVKEKYKKNYLSKLSGSDLFVTLEPCSKK 86 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 G++ C + + +R+VV DP + G+ L G + + + + ++ Sbjct: 87 GKTGACVNELKKYDFKRIVVGTKDP----TQNGINNLQSAGYELKNLNNQQCQALNESFF 142 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + + + K+A+S D+ A ITG ++N V LRA++D IL G GT+ Sbjct: 143 HKVKSNKPFVRAKVAMSSDHKSVFASKQRKWITGIPARNNVQTLRAEADIILTGAGTINE 202 Query: 203 DDPELTCRLNGLQEHS----PMRIILD---------PHFKLSLDSKIIKTALLAPVIIVT 249 D+P + R + + P R + P FKL ++ + P + Sbjct: 203 DNPSMNVRSKKIIANKNFVQPERYVFSNSLNLNWSAPFFKLPGKKVVVTSKKNLPKLPQG 262 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 ND +++L KKN N + + D K ++ L V ++L+E G + SF + L+D Sbjct: 263 INDISLMSL---KKNSNSLSSE--DFIKRISKL---NVNNILIEAGPRLLGSFGDYGLID 314 Query: 310 SIILYRSQIVIG 321 I Y S +G Sbjct: 315 EYIFYISPEKLG 326 >gi|212702196|ref|ZP_03310324.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098] gi|212674401|gb|EEB34884.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098] Length = 380 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 164/352 (46%), Gaps = 40/352 (11%) Query: 8 ARFMSAALRFS---RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 A FM AL + RW NP+V ++V+DG V+ RG G PHAEV+ L +A Sbjct: 7 APFMREALTLAENGRWSA---CPNPTVGAVLVRDGQVVARGWHHAAGQPHAEVECLRDAQ 63 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + T VTLEPC+HYG++PPC++ ++ GI+RVV+ + DP + +G G + L Sbjct: 64 RQGIDPAQCTLVVTLEPCNHYGKTPPCSEAVLAAGIKRVVIGLYDPTPKAAG-GAERLRA 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ ++ + E E + + +L Q + R ++ LK+A + D I S ++ S+ Sbjct: 123 AGVEVIGPVCEQECRDQVADFLAWQ-QGRPYVILKMAATMDGRIATRTGHSRWVSSEGSR 181 Query: 181 NQVHLLRAQSDAILVGIG-----------TVLADDPELTCRLNGLQ-EHSPMRIIL---- 224 VH LRA GIG T AD+P LT R+ G E P+ +L Sbjct: 182 ALVHRLRA-------GIGRAGGAVLVGGGTFRADNPCLTARIPGETVEQQPLACVLTSRL 234 Query: 225 -DPHFKLSLDSKIIKTA--LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 +P + L + A L +P + + + R + C D + + Sbjct: 235 PNPAGDIHLLKERPHQAVFLCSPAAAASTAAHALRQMGVRVLALGPGQRGCPDFPAMFHM 294 Query: 282 LVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 L +L EGG +A S + + D +L+ + ++G+ +PL +G Sbjct: 295 LYEELHCPYVLCEGGGHLALSLLEAGFADEFLLHLAPRILGDNEA-APLFDG 345 >gi|215693340|dbj|BAG88722.1| unnamed protein product [Oryza sativa Japonica Group] Length = 404 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 161/316 (50%), Gaps = 22/316 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +A + Sbjct: 86 DGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDARDL 145 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI V Sbjct: 146 AENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGIDV 205 Query: 127 DRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQV 183 ME E + AY+ + ++ TL+ +S + ++ G G+ G+ S+ Sbjct: 206 RVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYSQ--- 262 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LL+ I+ GI + P T G ++ P+ II+ L+ + ++ + Sbjct: 263 -LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLNIQFLREECAS 317 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGAAVAH 300 +++T D PV + + ++ D L+ +L IL RG+ S+LV E G A+ Sbjct: 318 EAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGLCSVLVDFREAGGDFAY 372 Query: 301 ---SFINSRLVDSIIL 313 +F +LV +++ Sbjct: 373 LLKNFQEEKLVQKVVV 388 >gi|229006420|ref|ZP_04164086.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4] gi|228754830|gb|EEM04209.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4] Length = 278 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 4/234 (1%) Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 ++RVV+ D + VSG G + L + GI + ++E E + K +T+K Sbjct: 1 MKRVVIATLDCNPLVSGSGAKRLQKAGISVTTSVLEEEATALNRYFFHYMKTKLPFVTIK 60 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 A+S D I S ITG +++ VH R DAIL+G+ TV+AD+P LT RL Sbjct: 61 TAMSLDGKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNGG 120 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-- 273 +H P+RIILD H + L S +I + IIV ++ + + + ++++ Sbjct: 121 KH-PIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGYESQAVSVLQMKTSQI 179 Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +++ LL +L + + SL VEGG +V SF+ ++ + I+ Y S +IG P+ Sbjct: 180 EIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPT 233 >gi|167914873|ref|ZP_02501964.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 112] Length = 112 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 52/104 (50%), Positives = 65/104 (62%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 GE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDP 108 >gi|330447671|ref|ZP_08311319.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491862|dbj|GAA05816.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 146 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 61/137 (44%), Positives = 78/137 (56%), Gaps = 1/137 (0%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL S + NP V C++VKDG ++ G T G HAE AL GE Sbjct: 10 FMMRALLLSHQALPACRPNPPVGCVLVKDGQIVSEGFTQRPGHHHAEAMALANYGESLDD 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L Q G+ V+ Sbjct: 70 VTAYVTLEPCSFVGRTPSCAHTLVERGIKKVVVATLDPDTRNSGKGIAVLEQAGVEVEVG 129 Query: 129 MMESEGKIFLHAYLTRQ 145 + E+E F+ YL R Sbjct: 130 LCENEVLDFIEPYLIRN 146 >gi|153833299|ref|ZP_01985966.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] gi|148870435|gb|EDL69356.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] Length = 159 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 83/137 (60%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 22 QFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDLS 81 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD+R +GRG+ L + G+ V+ Sbjct: 82 DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDLRNAGRGIDILKEGGVEVEI 141 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 142 GLCGEEVSAFLTPYLGK 158 >gi|302381385|ref|YP_003817208.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Brevundimonas subvibrioides ATCC 15264] gi|302192013|gb|ADK99584.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Brevundimonas subvibrioides ATCC 15264] Length = 209 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 85/147 (57%), Gaps = 4/147 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ + +G T NP+V C+IVKDG+V+ TA GG PHAE QA+ Sbjct: 1 MSDAAADQVHMRRAIDLALARMGETWPNPAVGCVIVKDGMVLSEAATAPGGRPHAEEQAV 60 Query: 61 EEAGEEARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG GATAYVTLEPC GR+ CAQF+ E GI RVVV DP SGRG + Sbjct: 61 PAAGPGVAGATAYVTLEPCGARSSGRA-SCAQFLAEAGISRVVVAALDPSPFASGRGTER 119 Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTR 144 L Q G+ V+ +M+ E + +L R Sbjct: 120 LRQAGLRVETGLMKDEAGVLSEGFLHR 146 >gi|254420634|ref|ZP_05034358.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Brevundimonas sp. BAL3] gi|196186811|gb|EDX81787.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Brevundimonas sp. BAL3] Length = 209 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 83/147 (56%), Gaps = 4/147 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D FM+ A+ + +G T NP+V C+IVKDG +I + TA GG PHAE QA+ Sbjct: 1 MSWTDADRAFMAQAIDLATARMGETWPNPAVGCVIVKDGRIIAQAATAPGGRPHAEEQAV 60 Query: 61 EEAGEEARGATAYVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG E GAT YVTLEPC GR CA F+ E G+ RVV+ DP +GRG + Sbjct: 61 PAAGAEIEGATVYVTLEPCGARSSGRQ-SCAHFLTEAGVERVVIACLDPSPFAAGRGTER 119 Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTR 144 L KG+ V+ +M EG +L R Sbjct: 120 LRAKGLTVETGLMCDEGAALCEGFLHR 146 >gi|27365734|ref|NP_761262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio vulnificus CMCP6] gi|27361883|gb|AAO10789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio vulnificus CMCP6] Length = 141 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 80/135 (59%), Gaps = 1/135 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL S++ + NP V C++VK+G ++ G T G HAEVQALE + Sbjct: 6 MLRALEVSKFALPNCLPNPPVGCVLVKEGSIVAEGFTQKIGGNHAEVQALEAYSGDMDSV 65 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD R GRG+Q L Q G+ VD + Sbjct: 66 TAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDPRNGGRGIQILEQAGVQVDIGL 125 Query: 130 MESEGKIFLHAYLTR 144 S+ FL YL + Sbjct: 126 CSSQVSAFLEPYLGK 140 >gi|218888179|ref|YP_002437500.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759133|gb|ACL10032.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 419 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 118/218 (54%), Gaps = 9/218 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ +R + NP+V ++V+DG V+ RG G PHAEV+ L +A G + Sbjct: 10 FMREAIALARRGRWRAAPNPTVGAVLVRDGQVVARGYHTACGMPHAEVECLRDAAANGVD 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T VTLEPC+H+G++PPC+Q ++ GIR VVV + DP+ G G ++L Q G+ V Sbjct: 70 PAACTLMVTLEPCNHHGKTPPCSQAVLAAGIRHVVVGMADPNPVARG-GAEFLRQHGVRV 128 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + E + + + ++T + ++ LK+A + D I S I+ S+ +VH Sbjct: 129 DMGVCEQDCRDLVADFVTWKKTDLPYVILKLASTLDGRIATRAGHSQWISCAASRRRVHA 188 Query: 186 LR----AQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 +R A+LVG GT+ AD+P LT R + P Sbjct: 189 IRAGAGHAGGAVLVGGGTLFADNPLLTARCGDFSDAFP 226 >gi|152990173|ref|YP_001355895.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2] gi|151422034|dbj|BAF69538.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2] Length = 333 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 36/237 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 ++D FM AL+ + + GLT NP+V ++ + +I +G G PHAEV+A++ A Sbjct: 3 NYDNFFMDIALQEAWRYQGLTYPNPAVGAVVAINNCIISKGAHTKAGAPHAEVEAIKNAY 62 Query: 64 ----GEEA----------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 G+E AT YVTLEPC+H+G++PPC+ I + G Sbjct: 63 YTLTGDEHVLHLQDALELHEYLVANAKDLFHNATIYVTLEPCNHFGKTPPCSLLIKKLGF 122 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKI 156 +RVV+ + DP+ +G G +L GI VD + E K+ + +L Q + K+ Sbjct: 123 QRVVIALKDPNEEAAG-GASFLRNCGIEVDIGIQEERAKVLIEPFL--QWRSSTFTFFKL 179 Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 A + + +I G + I+G S+ VH LR + + +++G TV D P L R+ G Sbjct: 180 AQAFNGVID----GGI-ISGAESRKYVHALRDRIELLVIGGNTVRTDRPILDARMVG 231 >gi|269961115|ref|ZP_06175483.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834066|gb|EEZ88157.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 159 Score = 109 bits (273), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 82/137 (59%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 22 QFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDLS 81 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V+ Sbjct: 82 DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVEI 141 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 142 GLCGEEVSAFLTPYLGK 158 >gi|126730233|ref|ZP_01746044.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] gi|126708966|gb|EBA08021.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] Length = 89 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 50/86 (58%), Positives = 63/86 (73%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ DARFM+ AL R +G T NP+V CLIV+ G V+GRG T G PHAE QAL Sbjct: 1 MTASDARFMAQALALGRRGMGQTWPNPAVGCLIVRKGRVVGRGWTQPSGRPHAETQALAM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPC 88 AG+ ARGAT YVTLEPC+H+G++PPC Sbjct: 61 AGDAARGATVYVTLEPCAHHGKTPPC 86 >gi|325268454|ref|ZP_08135084.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM 16608] gi|324988982|gb|EGC20935.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM 16608] Length = 380 Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 156/362 (43%), Gaps = 37/362 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G HAEV A Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVKKEEEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA----VSQDNMIG----- 165 ++ L + GI V ++E E ++T R ++ LK A V+ + + Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFVTYNTHHRPYVILKWAQTKRVTTNTLFNTPTNT 180 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEH- 217 ++ ++P + + R D +I+ G + D + T L G H Sbjct: 181 LSNTPAIPSPSPLPHREGSEHRDSPDDLSIINGSQDEITDREKKTSAAYIGNLPGRDYHP 240 Query: 218 ----SPMRIILDPHFKLSLDSKII-KTA--LLAPVIIVTENDDP---VLALAFRKKNINI 267 +P +L + D+ ++ KT L P + V E P L L K Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPKREG- 299 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 + + L+ L SL+VEGGA SF+ + L D I + + IGEG Sbjct: 300 ---EYATPAEALSHLYAEKKQSLIVEGGAKTLQSFLEAGLWDEIRIETAPFTIGEGIEAP 356 Query: 328 PL 329 PL Sbjct: 357 PL 358 >gi|54303332|ref|YP_133325.1| putative riboflavin biosynthesis protein RibD [Photobacterium profundum SS9] gi|46916762|emb|CAG23525.1| Putative riboflavin biosynthesis protein RibD [Photobacterium profundum SS9] Length = 141 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 59/136 (43%), Positives = 82/136 (60%), Gaps = 1/136 (0%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL+ S+ + + NP V C++VK+ ++ G T G HAEVQAL Sbjct: 5 FMLRALQISKSALPDCTPNPPVGCVLVKNDFIVSEGFTQAIGGNHAEVQALNSYSGSTEN 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TAYVTLEPCS+ GR+P CA +I GI+RVVV + DPD R SG+G++ L Q G+ V+ Sbjct: 65 ITAYVTLEPCSYVGRTPACANTLINSGIKRVVVSMLDPDPRNSGKGVKILEQAGVQVEIG 124 Query: 130 MESEGKI-FLHAYLTR 144 + ++ I FL YL + Sbjct: 125 LCNDQVIHFLAPYLGK 140 >gi|75761017|ref|ZP_00741020.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491503|gb|EAO54716.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 284 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 4/233 (1%) Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156 +RVV+ D + VSG G + L + I + ++E+E + + KR +T+K Sbjct: 8 KRVVIATLDCNPLVSGNGKRRLEEARIEVTTGVLEAEAVLLNRYFFHYMKTKRPFVTIKT 67 Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216 A+S D I S ITG ++ VH R DAILVG+ TV+AD+P LT R+ + Sbjct: 68 AMSLDGKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGK 127 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--D 274 H P+R++LD H + S +I L IIV ++ ++ KNI I + + + Sbjct: 128 H-PIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQMETKHIE 186 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 ++ LL+ L + + SL VEGG ++ SF+ + + I+ Y S +IG P+ Sbjct: 187 IEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPT 239 >gi|315499926|ref|YP_004088729.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis excentricus CB 48] gi|315417938|gb|ADU14578.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis excentricus CB 48] Length = 216 Score = 108 bits (271), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 68/178 (38%), Positives = 99/178 (55%), Gaps = 3/178 (1%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TLK+A + D I S ITG ++ VH LRA DA+LVGI TVL DDPELT Sbjct: 3 RPFVTLKLATTLDGRIATHTGESRWITGEPARRAVHELRASHDAVLVGIETVLKDDPELT 62 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVL-ALAFRKKNIN 266 RL G + + P R++LD ++ L SK+++TA + P +VT +D +P L +L R + Sbjct: 63 VRLQGYEGYQPARVVLDTRGRIPLHSKLVQTARVIPTYVVTTHDLNPELVSLGVRPLKVA 122 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + DL L L G+ L VEGG +A +F+ VD + +R+ ++G G Sbjct: 123 SRHQRV-DLIAALEALNEAGIDRLFVEGGGQIATAFVKLGAVDRLEWFRAPTILGGDG 179 >gi|114798296|ref|YP_760756.1| riboflavin biosynthesis protein RibD domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738470|gb|ABI76595.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Hyphomonas neptunium ATCC 15444] Length = 217 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 110/215 (51%), Gaps = 10/215 (4%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K ITLKIA S D I +A S IT S+ + H +RA++DAI+VGIGT LADDP L Sbjct: 2 KNLRITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPLL 61 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R L P+RI+ D + +L S++ + L V+ VT + A ++I Sbjct: 62 TARTVPLPAKQPVRIVADSNARLPTASRLASSTDLGRVVAVTAGQG---SDALAAAGVDI 118 Query: 268 IYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 C D + + G+ +LL+EGG+ +A SF+ + LVD I +R+ I+IG G Sbjct: 119 WRCGNGVRMDAGEFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDG 178 Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +P+ L + + V + G DV Y+ Sbjct: 179 LPALGALGLSDLKSAARWRPVATERIGDDVLDTYV 213 >gi|302773850|ref|XP_002970342.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii] gi|300161858|gb|EFJ28472.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii] Length = 378 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 162/302 (53%), Gaps = 27/302 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG Sbjct: 28 DSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAGS 87 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+ Sbjct: 88 KAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGVE 147 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISK 180 V +E E ++ A+ R V K+ L+ A++ D GC S P+ Sbjct: 148 VTVGVEEELCRVTNEAFFHRMVTKKPFTCLRYAMTID------GCLLADPSTPVAASFYS 201 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDS 234 Q+ + DA++ ++ A DP L G ++ P+R++ + LS L + Sbjct: 202 QQLE----EYDAVVTTEASLDA-DPVLLSAEQGAKQ--PLRVVAVTSSSSLSKLAGLLSA 254 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ T LAP +++ + + + R+KN+ ++ + DL +L + RG S+L++ Sbjct: 255 RVFDTK-LAPTLLLGGKGESIETV-LRRKNVEVVPVNEVDLDSVLDLCNQRGACSVLLDS 312 Query: 295 GA 296 A Sbjct: 313 TA 314 >gi|114571043|ref|YP_757723.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10] gi|114341505|gb|ABI66785.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10] Length = 207 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 92/147 (62%), Gaps = 1/147 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M A+ +R G T+ NP+V C++V+DG +I G T GG PHAE AL+ AG E Sbjct: 6 DARYMDLAVALARAQQGRTAPNPAVGCVLVRDGRIIATGATQDGGRPHAERVALDAAGAE 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPC+H+G++PPCA +I+ GI R V+ D +VSGRGL L+ G+ V Sbjct: 66 AAGATAYVTLEPCAHHGQTPPCADGLIQAGIERAVIACGDRFEQVSGRGLAILAAAGMTV 125 Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHI 152 + + E++ + +R HI Sbjct: 126 ETGLRETDATSLYAGFFSRLASGLPHI 152 >gi|329114509|ref|ZP_08243268.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001] gi|326695989|gb|EGE47671.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001] Length = 350 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 92/307 (29%), Positives = 136/307 (44%), Gaps = 39/307 (12%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77 VG T+ NP V C+++ G V+ G HAE A+E+A G R TA VTLE Sbjct: 31 VGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGLVERIDTAVVTLE 90 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM---MESEG 134 PC+H GR+PPC + ++ ++ + DP+ V G G L +GI V+R+ M + G Sbjct: 91 PCNHTGRTPPCTEALLSTPVKTAWIGCADPNPHVQGGGAARLEHEGITVNRLWQCMNAAG 150 Query: 135 -----KIFLHAYLTRQVEKRSHITLKIAV-SQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + L + R R IT+K A+ S+ +M+ G + T S H LR Sbjct: 151 TYARCRALLAPFAWRMTHGRPWITVKQALDSKGSMVPPQGQKT--FTTPASLRLAHALRR 208 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +D I+ G GTVLAD P LT R +++H R +L V+ Sbjct: 209 VTDGIVTGTGTVLADRPTLTVR--HVEDHPERRRLL--------------------VVCG 246 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 E P LA ++ +C D+ +L IL +LVE G + + L Sbjct: 247 QEKHAPAEWLASVSAAFDVSFCP--DIAQLPYILAQSDALWVLVEAGPTLLEALKTHNLW 304 Query: 309 DSIILYR 315 D + R Sbjct: 305 DDWLTIR 311 >gi|169836055|ref|ZP_02869243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [candidate division TM7 single-cell isolate TM7a] Length = 277 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 82/282 (29%), Positives = 145/282 (51%), Gaps = 23/282 (8%) Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSH 151 ++ G++R V+ DP+ +V+G+G+Q L GI V + +++SE + + K + Sbjct: 1 MKMGLKRCVIGSSDPNPKVAGKGVQILRNAGIEVRENVLKSECDKINQVFFKYIMTKIPY 60 Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + LK A++ D I S IT ++ +V L R + I+VGI TVLAD+P LT R+ Sbjct: 61 LFLKCAITLDGKIATKTGNSKWITNETAREKVQLYRNKFMGIMVGINTVLADNPSLTARV 120 Query: 212 -NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKKNIN 266 NG+ +P RII+DPHFK + IIK IIVT EN + L + K + Sbjct: 121 ENGV---NPYRIIIDPHFKTGKNHNIIKENSDEKTIIVTSKNNENSEKQLDFSENSK-VK 176 Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-- 322 ++ + K++L + G+ S+L+EGG ++ ++D+ ++ + ++G+ Sbjct: 177 FVFLNGTKFSFKEILCKIGQIGIDSILLEGGQSLISQAFEENVIDAGEIFIANKILGDEK 236 Query: 323 ------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 G ++E + KN V+ + +G +V +E+ KN Sbjct: 237 GKSFIVGFDREKMDEAVILKN---VKYNVYGENVGMEFWQKN 275 >gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 170/367 (46%), Gaps = 19/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ M A+ + GLT+ +P C+I + ++G G G AEVQA+EEA E+ Sbjct: 1 DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGARSAEVQAVEEAREQ 60 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA+++LEP G A +++ G+ RVVV + P G+ + L + G+ V Sbjct: 61 ARGATAFLSLEPGDCGGDDAAIAA-LVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119 Query: 127 D---------RMMESEGKIFLHA---YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + +E+ K A L R TLK A++ D I + S + Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLDGKIAASSGHSAWV 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +S+++V RAQSDA++VG TV D+P LT RL G H P RI++ L D+ Sbjct: 180 SSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTRLEG--GHQPDRIVMSRALDLPRDA 237 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + +++ + + + + ++ D + ++ RG S+L E Sbjct: 238 NLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYMRGYLSVLWEC 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G ++ I +V ++ + + ++G +P+ E + + ++ SDV E Sbjct: 298 GGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKL----SDVAFEQ 353 Query: 355 IGKNLCL 361 G ++ + Sbjct: 354 TGPDMLV 360 >gi|156977316|ref|YP_001448222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi ATCC BAA-1116] gi|156528910|gb|ABU73995.1| hypothetical protein VIBHAR_06102 [Vibrio harveyi ATCC BAA-1116] Length = 201 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 81/137 (59%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM AL S + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 64 QFMLRALEVSLNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYKGDLS 123 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V+ Sbjct: 124 DVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVEI 183 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 184 GLCGEEASAFLSPYLGK 200 >gi|294670266|ref|ZP_06735159.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308003|gb|EFE49246.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 260 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 120/218 (55%), Gaps = 10/218 (4%) Query: 111 VSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 ++G+GL LS GI + ++E+E + +L+R R + LK A S D ++ Sbjct: 1 MAGKGLSMLSAAGIRTESGLLETEARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDG 60 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHF 228 S ITG +++ V +LRA+S A+L GIGTVLADDP+L R L++ P+RI+LD Sbjct: 61 LSQWITGEAARHDVQILRAESCAVLTGIGTVLADDPQLNVRAFPTLRQ--PLRIVLDSRL 118 Query: 229 KLSLDSKIIKTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILV 283 +L +K++ +PV+++T E L + + D R L +LT+L Sbjct: 119 RLPPTTKLLADP-ASPVLLLTAVPPEKYPAALTAVPHLDILTVPAADGRISLPAVLTLLA 177 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 RG+ LLVE GA + +F+ + L D I+LY++ ++G Sbjct: 178 ERGIGELLVEAGATLCGAFLQAGLADEIVLYQAGKILG 215 >gi|302769374|ref|XP_002968106.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii] gi|300163750|gb|EFJ30360.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii] Length = 375 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 98/302 (32%), Positives = 161/302 (53%), Gaps = 27/302 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG Sbjct: 25 DSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAGS 84 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+ Sbjct: 85 KAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGVE 144 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISK 180 V +E E ++ A+ R V K+ L+ A++ D GC S P+ Sbjct: 145 VTVGVEEELCRVTNEAFFHRIVTKKPFACLRYAMTID------GCLLADPSTPVAASFYS 198 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDS 234 Q+ + DA++ ++ A DP L G ++ P+R++ + LS L + Sbjct: 199 QQLE----EYDAVVTTEASLDA-DPVLLSAEQGAKQ--PLRVVAVTSSSSLSQLAGLLSA 251 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ T LAP +++ + + R+KN+ ++ + DL +L + RG S+L++ Sbjct: 252 RVFDTK-LAPTLLLGGKGES-METVLRRKNVEVVPVNEVDLDSVLDLCYQRGACSVLLDS 309 Query: 295 GA 296 A Sbjct: 310 TA 311 >gi|255080300|ref|XP_002503730.1| predicted protein [Micromonas sp. RCC299] gi|226518997|gb|ACO64988.1| predicted protein [Micromonas sp. RCC299] Length = 215 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 61/122 (50%), Positives = 77/122 (63%), Gaps = 2/122 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA M AL + G T NP V C+IV + G+V+G G G PHAEV AL AG Sbjct: 72 DAERMRRALALAATAAGKTFPNPVVGCVIVDERSGVVVGEGYHPKAGEPHAEVFALRAAG 131 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+G TAYVTLEPC H+GR+PPC++ +++ G+ RVVV DPD RVSG G++ L GI Sbjct: 132 ANAKGCTAYVTLEPCDHFGRTPPCSRALVDAGVTRVVVGFVDPDPRVSGGGIRTLLDAGI 191 Query: 125 IV 126 V Sbjct: 192 EV 193 >gi|254673573|emb|CBA09063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Neisseria meningitidis alpha275] Length = 267 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 116/225 (51%), Gaps = 9/225 (4%) Query: 106 DPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 DP+ V+G+GL L GI + ++E + + +L+R +R + LK AVS D Sbjct: 3 DPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKT 62 Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRII 223 ++ S ITG ++ V +LRA+S A+L GIGTVLAD+P L R L++ P RI+ Sbjct: 63 ALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQ--PARIV 120 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCR-DLKKL 278 LD +L +S ++ I E ++ L ++ I+ D + DL L Sbjct: 121 LDSRLRLPPNSHLVTDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHL 180 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + +L G ++VE G+ + +F+ L D I+LYRS ++G G Sbjct: 181 MRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSG 225 >gi|220904884|ref|YP_002480196.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869183|gb|ACL49518.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 385 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 96/333 (28%), Positives = 153/333 (45%), Gaps = 22/333 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ ++ T NP V ++V+DG ++ RG G HAEV L +A G + Sbjct: 9 FMREAIALAQQGRWKTCPNPMVGAVLVRDGHIVARGWHRAFGLDHAEVDCLNDAAAQGVD 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 T VTLEPC H G++PPC ++ GI+++VV + DP+ G G L + G+ + Sbjct: 69 PSECTLVVTLEPCCHQGKTPPCTDAVLRAGIKKIVVGLSDPNPEACG-GACRLRESGLDV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + + +L Q +R ++ LK+A + D I S I+ S+ +V Sbjct: 128 IEGVCADACRDLVADFLVWQQAQRPYVILKMAATLDGRIATRKGESQWISSEESRQEVQR 187 Query: 186 LRAQ----SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIIL---------DPHFKLS 231 LRA A+LVG GT ADDP LT R +N + P + D F L Sbjct: 188 LRAGIGRCGGAVLVGGGTFRADDPRLTVRPINDGEPLGPQPLACVLTSRLPQPDADFYL- 246 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLL-TILVGRGVTS 289 L + +T LA L + R ++ DL +L T+ Sbjct: 247 LKERPQQTVFLASPAAAASTTAKALRDMGVRVLSLGPSLRGGPDLTHMLRTMREELDCPY 306 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 LL EGG +A S + + +VD L+ + +++G+ Sbjct: 307 LLCEGGGHLALSLLEAGVVDEFRLHMAPMILGD 339 >gi|325963044|ref|YP_004240950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter phenanthrenivorans Sphe3] gi|323469131|gb|ADX72816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter phenanthrenivorans Sphe3] Length = 386 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 86/261 (32%), Positives = 127/261 (48%), Gaps = 25/261 (9%) Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + G T VTLEPC+H GR+ PCA II GI VV VDDP +G G L + G Sbjct: 87 GLDLTGCTMVVTLEPCNHVGRTGPCAAAIIAAGITDVVYAVDDPHDPAAG-GATTLREAG 145 Query: 124 IIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + V + + + L+ + KR +TL IA + D+ I S I+ S Sbjct: 146 VRVRSGLGATESLDLNRQWFEAVAAKRPFVTLHIAQTLDSRIAAEDGTSQWISSPESLAD 205 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +R + DAILVG TVL D+P LT R +P +L+ SK Sbjct: 206 NHAIRGRIDAILVGTQTVLVDNPRLTAR--------------EPSGELA--SK------- 242 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 PV V D A ++ +++ RD ++ L+IL G+ L+VEGG+ + +F Sbjct: 243 QPVRAVMGMRDIPADAAVHGRDGRVVHLPTRDPREALSILYAHGIRHLMVEGGSRILSAF 302 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + + LVD +I+Y + ++G G Sbjct: 303 LAAELVDELIVYLAPTLLGSG 323 >gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens] Length = 602 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 97/365 (26%), Positives = 168/365 (46%), Gaps = 19/365 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+R + A+ ++ GLT+ +P C++V+ V+G G + G AEVQA+EEAGE Sbjct: 19 DSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTGGLSGLGARPAEVQAVEEAGEY 78 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA++ LEP G A ++ G+ R+VV + P G+ + L G+ V Sbjct: 79 ARGATAFLNLEPGDCGGDDAAVAA-LVRGGLERIVVGMRHPLPHFRGKAIAALQSAGVKV 137 Query: 127 DRMMESEG------------KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 D E G ++ L R TLK A++ D I + S + Sbjct: 138 DVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLKYAMTLDGKIAASSGHSAWV 197 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + S+ +V RAQ DA++VG TV +D+P LT R G H P RI++ L ++ Sbjct: 198 SSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAG--GHQPDRIVITRTMNLPREA 255 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + T+ +++ + + + + ++ D + ++ RG S+L E Sbjct: 256 NLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISPRAVMEHCYSRGYLSVLWEC 315 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G ++ I ++ ++ + + V+G P+P+ E F+ + + SDV E Sbjct: 316 GGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVG----ELGFVQMTQALKLSDVSFEL 371 Query: 355 IGKNL 359 G ++ Sbjct: 372 TGPDM 376 >gi|260551098|ref|ZP_05825302.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624] gi|260405865|gb|EEW99353.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624] Length = 113 Score = 107 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 47/93 (50%), Positives = 66/93 (70%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL +AGE+ Sbjct: 7 DQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFALRQAGEQ 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 A+GATAYVTLEPC+HYGR+PPCA+ +++ +++ Sbjct: 67 AQGATAYVTLEPCAHYGRTPPCAEALVKAQVKK 99 >gi|197106417|ref|YP_002131794.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum HLK1] gi|196479837|gb|ACG79365.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum HLK1] Length = 143 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/135 (42%), Positives = 80/135 (59%), Gaps = 2/135 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ +R VG T NP+V C+I+KDG V+G T GG PHAE AL +AGE ARGA Sbjct: 1 MRRAIALARPQVGRTGENPAVGCVILKDGRVLGEAATGDGGRPHAEELALAQAGEAARGA 60 Query: 71 TAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA+VTLEPC+ + C++ + G+ RVVV DP V +G G L GI+ D+ Sbjct: 61 TAFVTLEPCAERSSGAASCSERLAAAGMSRVVVACADPSVFAAGGGAARLRAAGIVFDQG 120 Query: 129 MMESEGKIFLHAYLT 143 ++E+E +Y+ Sbjct: 121 LLEAEAAPLYASYVA 135 >gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group] Length = 558 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 49/347 (14%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 50 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 109 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 LEP YG S + + E + + V+ P Sbjct: 110 NLEPGDCYGDSTAVSTLVQEA--LKSCLIVNAP--------------------------- 140 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L R + LK A++ D I + + ++G S+ +V LR +SDAI+ Sbjct: 141 ------LLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 194 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 195 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 252 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L K + ++ D + + +++ RG S+L E G +A S I++ ++ + + Sbjct: 253 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 312 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +IG P+P+ G L N M D DV E I +++ + Sbjct: 313 LAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 355 >gi|224130250|ref|XP_002320789.1| predicted protein [Populus trichocarpa] gi|222861562|gb|EEE99104.1| predicted protein [Populus trichocarpa] Length = 199 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 58/154 (37%), Positives = 92/154 (59%), Gaps = 13/154 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M + +R +G TS +P V C+IVK G PHAEV AL +AG+ Sbjct: 31 DGFYMRRCVELARKAIGCTSPSPMVGCVIVK------------AGQPHAEVFALRDAGDV 78 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC++ +++ ++ VV+ + DP+ V+ RG+Q L GI V Sbjct: 79 AENATAYVSLEPCNHYGRTPPCSEVMVKAKLKEVVIGMIDPNPIVATRGVQRLRDAGIDV 138 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVS 159 +E E K + A++ + + + +TL+ ++S Sbjct: 139 VVGVEEELCKRLIEAFIHKMLTGKPFVTLRYSLS 172 >gi|91792826|ref|YP_562477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] gi|91714828|gb|ABE54754.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] Length = 142 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL S+ + NP V C++VKDG V+G+G T G HAEV+AL + Sbjct: 4 EYMLIALELSKKALPHCLPNPPVGCVLVKDGQVVGQGFTQVIGGNHAEVEALNSYTGDLA 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 G TAYVTLEPCS GR+P CA + G++ +V+ + DPD R +G+GL L GI V+ Sbjct: 64 GVTAYVTLEPCSFVGRTPACAARLAHSGLKHLVLAMLDPDSRNNGKGLAMLQHAGINVEL 123 Query: 128 RMMESEGKIFLHAYLTR 144 + E++ FL YL + Sbjct: 124 GICEAQASAFLSPYLLK 140 >gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group] Length = 577 Score = 105 bits (263), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 49/347 (14%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 LEP YG S + + E + + V+ P Sbjct: 129 NLEPGDCYGDSTAVSTLVQEA--LKSCLIVNAP--------------------------- 159 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L R + LK A++ D I + + ++G S+ +V LR +SDAI+ Sbjct: 160 ------LLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 213 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 214 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 271 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L K + ++ D + + +++ RG S+L E G +A S I++ ++ + + Sbjct: 272 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 331 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +IG P+P+ G L N M D DV E I +++ + Sbjct: 332 LAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 374 >gi|327312630|ref|YP_004328067.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289] gi|326946400|gb|AEA22285.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289] Length = 380 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 107/392 (27%), Positives = 145/392 (36%), Gaps = 109/392 (27%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G HAEV A Sbjct: 1 MKQEKTDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV---------------- 158 ++ L + GI V ++E E ++T R ++ LK A Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNTLSNTPTNT 180 Query: 159 ---------------------------------SQDNMIGMAGCGSVPITGFISKNQVHL 185 SQD + SV G + H Sbjct: 181 LSNTPASPSPSPLPHREGSEHRDSTDDLSIINGSQDEITAREKKTSVAYIGNLPGKDYHP 240 Query: 186 L--------------RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 L RA++DAILVG T + P+LT R +P +++L H Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVR--EWSGPNPEKLVLTSHPTRE 298 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 E P ALA L SL+ Sbjct: 299 -----------------GEYATPAEALAH---------------------LYEEKKQSLV 320 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 VEGG SF+++ L D I + + +G+G Sbjct: 321 VEGGVKTLQSFLDAGLWDEIRIETAPFTVGKG 352 >gi|262277170|ref|ZP_06054963.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114] gi|262224273|gb|EEY74732.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114] Length = 357 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/305 (27%), Positives = 138/305 (45%), Gaps = 12/305 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR 84 T NP V + I VT G PHAE AL + ++ Y +LEPC H G+ Sbjct: 28 TFPNPCVGAAGIDKNNHIHLAVTGKNGSPHAEF-ALLKNKKKNFINELYTSLEPCCHIGK 86 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144 +P C+ II+ ++++ D D RV G+ + L +K I + + LH Y Sbjct: 87 NPSCSNLIIKKKVKKIFSSSIDLDERVKGKTNRLLKKKNISLKYTKQPSKPSILHNYCNS 146 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 ++ ++ KIA S D T + HLLR QSD+IL+G T+ D+ Sbjct: 147 N--QKPYVVAKIASSSDFYSKHKFKRLFTSTSALK--FAHLLRYQSDSILIGKNTINHDN 202 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAPVIIVTENDDPVLALAFRKK 263 P L CRLNG+++ + II + L + K+ + L + +E + + K Sbjct: 203 PSLNCRLNGIEKKIAIFII---NKNLFFNKKVFLNNNLKGSYVFHSEKNKTKIKKV--GK 257 Query: 264 NINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +IY D + LL I+ G LL+EGGA F+ + ++ + ++++ + Sbjct: 258 FFKLIYFDLNQPINDLLKIVYQLGYKKLLIEGGANTLRYFLKGKCINELYHVKNKLNFNK 317 Query: 323 GGIPS 327 G+ S Sbjct: 318 NGLLS 322 >gi|119384080|ref|YP_915136.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans PD1222] gi|119373847|gb|ABL69440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Paracoccus denitrificans PD1222] Length = 219 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 63/116 (54%), Positives = 70/116 (60%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R G NP V C+IVKDG +I G T GG PHAE AL AG ARGA Sbjct: 1 MGRALALARRMRGHVWPNPPVGCVIVKDGTIIAEGETQPGGRPHAERLALNRAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T YVTLEPC H+GR+PPCA II G+ RVV + DPD RV G G L GI V Sbjct: 61 TLYVTLEPCCHWGRTPPCADAIIAAGVTRVVAAMQDPDPRVDGGGFARLRAAGIEV 116 >gi|149909528|ref|ZP_01898182.1| putative riboflavin deaminase [Moritella sp. PE36] gi|149807433|gb|EDM67384.1| putative riboflavin deaminase [Moritella sp. PE36] Length = 144 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 58/137 (42%), Positives = 75/137 (54%), Gaps = 1/137 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM AL S+ + NP V C++VKD I++ G T G HAE QA+ G Sbjct: 6 DEKFMLRALELSKLALPNCRPNPPVGCVLVKDNIIVSEGYTQAPGQHHAEAQAIANYGAA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 TAYVTLEPCS GR+P CA + I+RVVV DPD R SG+GL L GI V Sbjct: 66 LNDITAYVTLEPCSFVGRTPSCAHTLAGLNIKRVVVATVDPDPRNSGKGLSVLRNAGIDV 125 Query: 127 D-RMMESEGKIFLHAYL 142 + + + + F+ YL Sbjct: 126 EVGVCQRDVSAFITPYL 142 >gi|56459161|ref|YP_154442.1| riboflavin-specific deaminase [Idiomarina loihiensis L2TR] gi|56178171|gb|AAV80893.1| Riboflavin-specific deaminase [Idiomarina loihiensis L2TR] Length = 141 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/138 (40%), Positives = 81/138 (58%), Gaps = 1/138 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM AL S+ + NP V C++VKDG VI +G T G HAEV+AL + Sbjct: 4 KFMLEALNISKQALPHCEPNPPVGCVLVKDGEVISKGFTQAIGGSHAEVEALNAHSGDLS 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G TAYVTLEPCS GR+ CA ++ GI+ V++ + DPD+R +G+G + L+ G+ V+ Sbjct: 64 GVTAYVTLEPCSFVGRTAACASTLLASGIKHVIIAMLDPDIRNNGKGAEILTAGGVKVEV 123 Query: 129 MMESE-GKIFLHAYLTRQ 145 + +E FL YL + Sbjct: 124 GLCAELVAQFLSPYLAKS 141 >gi|258542930|ref|YP_003188363.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01] gi|256634008|dbj|BAH99983.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01] gi|256637068|dbj|BAI03037.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-03] gi|256640120|dbj|BAI06082.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-07] gi|256643177|dbj|BAI09132.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-22] gi|256646232|dbj|BAI12180.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-26] gi|256649284|dbj|BAI15225.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-32] gi|256652271|dbj|BAI18205.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655328|dbj|BAI21255.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-12] Length = 350 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/307 (28%), Positives = 135/307 (43%), Gaps = 39/307 (12%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77 VG T+ NP V C+++ G V+ G HAE A+E+A G R TA VTLE Sbjct: 31 VGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGVVERIDTAVVTLE 90 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131 PC+H GR+PPC + ++ ++ V + DP+ V G G L ++GI V+R+ + Sbjct: 91 PCNHTGRTPPCTEALLSTPVKTVWIGCADPNPHVQGGGAARLEREGITVNRLWQCMNAAA 150 Query: 132 --SEGKIFLHAYLTRQVEKRSHITLKIAV-SQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + L + R R +T+K A+ S+ +M+ G + T S H LR Sbjct: 151 TYARCRALLAPFAMRMTHGRPWVTVKQALDSKGSMVPPKGQKT--FTTPASLRLAHTLRR 208 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +D I+ GTVLAD P LT R +++H R +L V+ Sbjct: 209 VTDGIVTATGTVLADRPTLTVR--HVEDHPERRRLL--------------------VVCG 246 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 E P L ++ +C D+ +L IL +LVE G + + L Sbjct: 247 QEKHAPAEWLDSVSAAFDVRFCP--DIAQLPDILAQSDALWVLVEAGPTLLEALKTHNLW 304 Query: 309 DSIILYR 315 D + R Sbjct: 305 DDWLTIR 311 >gi|116328771|ref|YP_798491.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121515|gb|ABJ79558.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 432 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQALEE---AG 64 F + S G +S NP V+CLI V + ++ +G T+ G PHAE A E G Sbjct: 8 FREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGWTSPTGGPHAERNAYYEFVKNG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKG 123 +VTLEPC+H G++PPC I+E + + DP+ V GL+ ++G Sbjct: 68 FFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRG 127 Query: 124 IIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I+V + + + L +++R K+ + LK A+S++ V +G IS + Sbjct: 128 ILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNH 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +LRA+ DA+LVG GT+ D+P L R+ Sbjct: 188 LTSILRAKCDAVLVGPGTLFHDNPGLEFRI 217 >gi|116331682|ref|YP_801400.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125371|gb|ABJ76642.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 432 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/210 (31%), Positives = 106/210 (50%), Gaps = 8/210 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQALEE---AG 64 F + S G +S NP V+CLI V + ++ +G T+ G PHAE A E G Sbjct: 8 FREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGRTSPTGGPHAERNAYYEFVKNG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQKG 123 +VTLEPC+H G++PPC I+E + + DP+ V GL+ ++G Sbjct: 68 FFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGLELCRRRG 127 Query: 124 IIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I+V + + + L +++R K+ + LK A+S++ V +G IS + Sbjct: 128 ILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRFSGNISNH 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +LRA+ DA+LVG GT+ D+P L R+ Sbjct: 188 LTSILRAKCDAVLVGPGTLFHDNPGLEFRI 217 >gi|86152320|ref|ZP_01070531.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 260.94] gi|315125029|ref|YP_004067033.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840809|gb|EAQ58060.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 260.94] gi|315018751|gb|ADT66844.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 326 Score = 103 bits (258), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/368 (25%), Positives = 159/368 (43%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q KR K+A+S + Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KRQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG +F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|184200815|ref|YP_001855022.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Kocuria rhizophila DC2201] gi|183581045|dbj|BAG29516.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Kocuria rhizophila DC2201] Length = 434 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 70/188 (37%), Positives = 95/188 (50%), Gaps = 6/188 (3%) Query: 28 NPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR----GATAYVTLEPCSHY 82 NP V A L+ G ++ G G PHAEV L++A AR G+T VTLEPC H Sbjct: 32 NPVVGAALLGPTGQLLHVGHHRGAGTPHAEVDVLQQA-RAARTPLEGSTLVVTLEPCHHT 90 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 GR+ PC + G+ RVV + DP G G S + ++ E + +L Sbjct: 91 GRTGPCTAAVEAAGVPRVVYALADPTAEARGGGAALRSHGVHVRAGLLADEARELNERWL 150 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + + R ++LKIA S D + A S ITG ++ + H LR + DAILVG GT+ Sbjct: 151 RAREQARPFVSLKIAQSLDGRVAAADGTSQWITGLPARAEGHALRTRVDAILVGGGTLRG 210 Query: 203 DDPELTCR 210 DDP LT R Sbjct: 211 DDPALTAR 218 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 35/58 (60%) Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ D ++ LT L G +LVEGG VA +F+ + LVD + L+++ +++G+G Sbjct: 331 RFVHLSTHDPREALTRLRDLGAAHVLVEGGPTVAAAFLAADLVDELWLHQAPLLLGDG 388 >gi|254166543|ref|ZP_04873397.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|289596093|ref|YP_003482789.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Aciduliprofundum boonei T469] gi|197624153|gb|EDY36714.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|289533880|gb|ADD08227.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Aciduliprofundum boonei T469] Length = 217 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 113/215 (52%), Gaps = 18/215 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+LT Sbjct: 3 RPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPKLT 62 Query: 209 CRLNGL-QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 + + +P+R++LD ++ +++++ ++ +I TEN R+ N I Sbjct: 63 VKEKYVANAKNPVRVVLDSKLRIPKNARVL-NSIAKTIIATTEN------AKIRELNAEI 115 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + C D DLK LL L RG+ S++VEGG V SF+ LVD + ++ +VIG GG Sbjct: 116 VICGKDKVDLKCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIG-GGA 174 Query: 326 PSPLEEGYLEKNFMCVRRDYF------GSDVCLEY 354 PS L EG KN V R F GS + L Y Sbjct: 175 PS-LVEGIGAKNENEVIRLKFLECKPLGSGILLRY 208 >gi|148975779|ref|ZP_01812610.1| Probable riboflavin biosynthesis protein RibD [Vibrionales bacterium SWAT-3] gi|145964852|gb|EDK30104.1| Probable riboflavin biosynthesis protein RibD [Vibrionales bacterium SWAT-3] Length = 141 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 55/140 (39%), Positives = 81/140 (57%), Gaps = 1/140 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + ++M AL+ S + NP V C++VK+ V+ G T G HAEV+AL Sbjct: 1 MNQQYMLQALQASHQALPDCQPNPPVGCILVKNDKVVSVGYTQKVGGNHAEVEALNHYDG 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G+ Sbjct: 61 DMEGVTAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHGVK 120 Query: 126 VD-RMMESEGKIFLHAYLTR 144 VD + +++ FL YL + Sbjct: 121 VDVGLCQAQVSAFLTPYLGK 140 >gi|209544013|ref|YP_002276242.1| riboflavin biosynthesis protein RibD [Gluconacetobacter diazotrophicus PAl 5] gi|209531690|gb|ACI51627.1| riboflavin biosynthesis protein RibD [Gluconacetobacter diazotrophicus PAl 5] Length = 366 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 90/313 (28%), Positives = 136/313 (43%), Gaps = 47/313 (15%) Query: 21 HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTL 76 ++G T+ NP V C I+ G ++ G PHAE AL + E+ R + A VTL Sbjct: 29 YMGATAPNPPVGCAILDARGEILTVAAHHRAGAPHAEALALRQCAEQGLMDRASVAVVTL 88 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 EPC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E+ G++ Sbjct: 89 EPCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGEL 148 Query: 137 --------------FLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKN 181 + ++ R+ +T+K AV D +MI A G T + Sbjct: 149 LPDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPA--GRTTFTSDAALT 206 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKT 239 H LR +DA++ G GTVLAD P L R R ++ D ++ D + Sbjct: 207 LAHRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPEDWRA--- 263 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A R + ++ CD D+ +L +L GV LVE G A+ Sbjct: 264 -------------------AARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALL 302 Query: 300 HSFINSRLVDSII 312 + + L D + Sbjct: 303 DALRAAGLWDDWL 315 >gi|91225503|ref|ZP_01260625.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01] gi|269968858|ref|ZP_06182841.1| putative riboflavin deaminase [Vibrio alginolyticus 40B] gi|91189866|gb|EAS76139.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01] gi|269826538|gb|EEZ80889.1| putative riboflavin deaminase [Vibrio alginolyticus 40B] Length = 141 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 4 EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 64 SVTAYVTLEPCSFVGRTPACAVTLVKSGISKVVVAILDPDPRNSGRGIEILKQAGIEVET 123 Query: 129 -MMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 124 GLCGEEVSEFLTPYLGK 140 >gi|24213844|ref|NP_711325.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira interrogans serovar Lai str. 56601] gi|45658378|ref|YP_002464.1| hypothetical protein LIC12536 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194684|gb|AAN48343.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira interrogans serovar Lai str. 56601] gi|45601621|gb|AAS71101.1| RibD [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 466 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 113/219 (51%), Gaps = 8/219 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQAL 60 ++S +F + S +G +S NP V+CLI V++ + +G T+ G PHAE A Sbjct: 1 MTSLPEKFREELRKLSFLSMGESSPNPPVSCLITDVENKRIFAKGRTSPTGGPHAERNAY 60 Query: 61 EE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGL 116 E G ++ +VT EPC+H+G++PPC I+E + + + DP+ V GL Sbjct: 61 YEFINNGLLSKPHNVWVTFEPCTHHGKTPPCLDLILEHKPKTLYYGLKDPNPLVRKNEGL 120 Query: 117 QWLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + GI V D ++ + L +++R +++ + +K AVS++ +V + Sbjct: 121 EICRNAGIQVVSDFGLKEIAEESLFGFISRIEKQKPSMIIKSAVSKEGFFTTKDKATVRL 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +G +S +LRA+ DA+L+G T+ D P L R+ G Sbjct: 181 SGNLSDRLTSILRAKCDAVLIGPRTLFQDLPGLDFRIGG 219 >gi|222628465|gb|EEE60597.1| hypothetical protein OsJ_13992 [Oryza sativa Japonica Group] Length = 739 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 87/284 (30%), Positives = 145/284 (51%), Gaps = 16/284 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +A + Sbjct: 4 DGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDARDL 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI V Sbjct: 64 AENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGIDV 123 Query: 127 DRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQV 183 ME E + AY+ + ++ TL+ +S + ++ G G+ G+ S+ Sbjct: 124 RVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYSQ--- 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LL+ I+ GI + P T G ++ P+ II+ L+ + ++ + Sbjct: 181 -LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLNIQFLREECAS 235 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +++T D PV + + ++ D L+ +L IL RG+ Sbjct: 236 EAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGL 274 >gi|28900546|ref|NP_800201.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|260365428|ref|ZP_05777965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] gi|260877493|ref|ZP_05889848.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|260894835|ref|ZP_05903331.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|28808926|dbj|BAC62034.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|308085328|gb|EFO35023.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|308090602|gb|EFO40297.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|308114425|gb|EFO51965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] Length = 141 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 4 EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 64 SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 124 GLCSEEVSEFLTPYLGK 140 >gi|270684433|ref|ZP_06222817.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae HK1212] gi|270316231|gb|EFA28189.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae HK1212] Length = 94 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 50/93 (53%), Positives = 62/93 (66%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 +AGE A+GATAYVTLEPCSHYGR+PPCA +I Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCALGLI 94 >gi|325676732|ref|ZP_08156406.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707] gi|325552514|gb|EGD22202.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707] Length = 263 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 82/252 (32%), Positives = 120/252 (47%), Gaps = 32/252 (12%) Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESE 133 LEPC+H GR+ PC++ +I+ GI V V DP+ +G G L I V + + Sbjct: 1 LEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNPAAAG-GADTLRAARIEVTGGLLADDA 59 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + L A+L RQ R H+T K A + D A S ITG ++ +VH RA+ DAI Sbjct: 60 ERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEARARVHADRARLDAI 119 Query: 194 LVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 +VG GTVLADDP LT R+ L H P+R+++ + + TA + Sbjct: 120 VVGTGTVLADDPWLTARMPDGSLAPHQPLRVVVG-------NRPVPSTARVL-------- 164 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 DD L R ++ I D +LVEGG +A +F+ + VD + Sbjct: 165 DDAAPTLVLRTHDVGEILSALADQD------------DVLVEGGPRLAGAFLAAGAVDRV 212 Query: 312 ILYRSQIVIGEG 323 Y + +V+G G Sbjct: 213 QAYIAPVVLGAG 224 >gi|86145701|ref|ZP_01064030.1| putative riboflavin deaminase [Vibrio sp. MED222] gi|85836400|gb|EAQ54529.1| putative riboflavin deaminase [Vibrio sp. MED222] Length = 145 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 5/144 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61 + ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L Sbjct: 61 ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120 Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144 G+ VD + + + FL YL + Sbjct: 121 HGVKVDVGLCQEQVNAFLTPYLGK 144 >gi|90578371|ref|ZP_01234182.1| putative riboflavin deaminase [Vibrio angustum S14] gi|90441457|gb|EAS66637.1| putative riboflavin deaminase [Vibrio angustum S14] Length = 146 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/140 (40%), Positives = 77/140 (55%), Gaps = 1/140 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + FM AL S + NP V C++VK+G ++ G T G HAE AL Sbjct: 7 EQAFMIRALLLSHQSLPACRPNPPVGCVLVKEGEIVSEGFTQPPGQHHAEAMALANYDGS 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L + GI V Sbjct: 67 FTDVTAYVTLEPCSFVGRTPSCAHTLVELGIKKVVVATLDPDSRNSGKGIAVLKEAGIEV 126 Query: 127 D-RMMESEGKIFLHAYLTRQ 145 + + E+E F+ YL + Sbjct: 127 EVGLCENEVLDFIEPYLIKN 146 >gi|302382996|ref|YP_003818819.1| bifunctional deaminase-reductase domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193624|gb|ADL01196.1| bifunctional deaminase-reductase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 210 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 67/182 (36%), Positives = 100/182 (54%), Gaps = 12/182 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R IT K+A S D IG + S ITG ++ Q H LRA DA+LVG+ TVLADDP LT Sbjct: 2 RPRITWKVATSLDGRIGTSTGESQWITGPQAREQGHRLRATHDAVLVGVETVLADDPRLT 61 Query: 209 CRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 RL +G P+R++LD + +++ + L I+T + V+ A I Sbjct: 62 VRLPDGETAADPLRVVLDSRLRTPPFARLARAGTL----ILTTREPIVIGEA----EIVR 113 Query: 268 IYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + D + ++ +L L RGV SL++EGG VA F+ + +VD+I +R+ I++G G Sbjct: 114 VAGDSQGRPTVEAVLETLSARGVRSLMIEGGGRVAACFVTAGVVDAIEWFRAPILLGGDG 173 Query: 325 IP 326 P Sbjct: 174 RP 175 >gi|153836433|ref|ZP_01989100.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio parahaemolyticus AQ3810] gi|260901767|ref|ZP_05910162.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] gi|149750335|gb|EDM61080.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio parahaemolyticus AQ3810] gi|308108841|gb|EFO46381.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] Length = 141 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/140 (42%), Positives = 77/140 (55%), Gaps = 1/140 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 1 MSQEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQG 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI Sbjct: 61 SLESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIE 120 Query: 126 VD-RMMESEGKIFLHAYLTR 144 V+ + E FL YL + Sbjct: 121 VEIGLCGKEVSEFLTPYLGK 140 >gi|328470490|gb|EGF41401.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio parahaemolyticus 10329] Length = 141 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 4 EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 64 SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 124 GLCGEEVSEFLTPYLGK 140 >gi|213416666|ref|ZP_03349810.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 141 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 65/139 (46%), Positives = 88/139 (63%), Gaps = 1/139 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAV 122 Query: 127 DR-MMESEGKIFLHAYLTR 144 +M SE + +L R Sbjct: 123 SHGLMMSEAEALNKGFLKR 141 >gi|254229831|ref|ZP_04923237.1| Pyrimidine deaminase [Vibrio sp. Ex25] gi|262395603|ref|YP_003287456.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp. Ex25] gi|151937667|gb|EDN56519.1| Pyrimidine deaminase [Vibrio sp. Ex25] gi|262339197|gb|ACY52991.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp. Ex25] Length = 141 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/137 (43%), Positives = 77/137 (56%), Gaps = 1/137 (0%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 4 EFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSLE 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 64 SVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVEI 123 Query: 128 RMMESEGKIFLHAYLTR 144 + E FL YL + Sbjct: 124 GLCGEEVSEFLTPYLGK 140 >gi|257413677|ref|ZP_04743810.2| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82] gi|257202725|gb|EEV01010.1| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82] Length = 173 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 55/139 (39%), Positives = 80/139 (57%), Gaps = 8/139 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + GE Sbjct: 35 RYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRGE 94 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI+ Sbjct: 95 DPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGIL 154 Query: 126 VDRMM-----ESEGKIFLH 139 V + E + ++F H Sbjct: 155 VTEGVLQEECEYQNRVFFH 173 >gi|84387508|ref|ZP_00990526.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus 12B01] gi|84377556|gb|EAP94421.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus 12B01] Length = 145 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/144 (39%), Positives = 82/144 (56%), Gaps = 5/144 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL + Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNSYDD 60 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L Sbjct: 61 GLDGEMEGITAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120 Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144 G+ VD + +++ FL YL + Sbjct: 121 HGVKVDVGLCQAQVSAFLTPYLGK 144 >gi|157415842|ref|YP_001483098.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 81116] gi|157386806|gb|ABV53121.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 81116] gi|307748478|gb|ADN91748.1| Putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni M1] gi|315931666|gb|EFV10627.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 327] Length = 336 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 159/368 (43%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAIAHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI ++ +++ EGK L +L Q E+ K+A+S + Sbjct: 135 VKDENKIASG-GAEFLKKQGIEIEFDILKEEGKKLLKPFLKWQKEQFK--LFKLALSMNG 191 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG +F + +D ++++S + E + PL NF + Sbjct: 279 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 323 RNFLGSDT 330 >gi|218676953|ref|YP_002395772.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32] gi|218325221|emb|CAV27160.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32] Length = 145 Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 58/144 (40%), Positives = 81/144 (56%), Gaps = 5/144 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---- 61 + ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL Sbjct: 1 MNQQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDC 60 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L Sbjct: 61 ETDGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILES 120 Query: 122 KGIIVD-RMMESEGKIFLHAYLTR 144 G+ VD + + + FL YL + Sbjct: 121 HGVKVDVGLCQEQISAFLIPYLGK 144 >gi|224009578|ref|XP_002293747.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970419|gb|EED88756.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 256 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 62/139 (44%), Positives = 80/139 (57%), Gaps = 9/139 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 +++ D + M A+R +R G T NP+V C++V G +IG G G PHAEV Sbjct: 97 LTTSDVQHMKLAVRLARIGYGNTFPNPAVGCVLVSHGDDSSSIIGSGFHPKAGMPHAEVF 156 Query: 59 ALEEA-GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 AL EA G + TAYVTLEPC H G++PPCA ++ GI RVVV DP+ RV G Sbjct: 157 ALLEACGHDHFADSNVTAYVTLEPCCHEGQTPPCALSLVVAGINRVVVGFRDPNPRVDGG 216 Query: 115 GLQWLSQKGIIVDRMMESE 133 G+Q L GI V +ME E Sbjct: 217 GIQLLKDAGIDV-HVMEVE 234 >gi|329889480|ref|ZP_08267823.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] gi|328844781|gb|EGF94345.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] Length = 208 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 66/179 (36%), Positives = 94/179 (52%), Gaps = 8/179 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + LK+A S D I A S ITG ++ Q H LRA DAILVG+ TVLADDPELT Sbjct: 2 RPRVILKLATSLDGRIATATGESQWITGPEARLQGHRLRATHDAILVGVETVLADDPELT 61 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 RL P+R++LD + +K+ L I T P+ + + + + Sbjct: 62 VRLPDYAGTHPLRVVLDSRLRTPATAKVASGNTL---IFTTAQPHPI----GQAEVVAVA 114 Query: 269 YCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 D R + +L L R + S+L+EGG VA SFI + VD+I +R+ +++G G P Sbjct: 115 PNDGRPAISAVLDALAARNIGSILIEGGGRVAASFIQAGAVDAIEWFRAPMLLGGEGRP 173 >gi|319957427|ref|YP_004168690.1| riboflavin biosynthesis protein ribd [Nitratifractor salsuginis DSM 16511] gi|319419831|gb|ADV46941.1| riboflavin biosynthesis protein RibD [Nitratifractor salsuginis DSM 16511] Length = 336 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 108/233 (46%), Gaps = 36/233 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + + GLT NP+V C +VK+G ++ G HAE+ A+ A E Sbjct: 5 DRFYMQLALGEAWRYQGLTYPNPAVGCCVVKEGRILAVEAHHKAGESHAELWAMLAAYEA 64 Query: 67 A---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 RG + YVTLEPC+H+GR+P CA + + R Sbjct: 65 LEGREAAVDSADADAVYDFLQTVPEELFRGVSLYVTLEPCAHHGRTPSCAWALSRFPLHR 124 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 VVV DP + G GL+ L+ GI + + E E + L +L Q +R+ + K+A Sbjct: 125 VVVATADP-IPGHGGGLEILADHGIEVATGVCEEEARELLEPFLIWQ--ERAFVLFKLAQ 181 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + + IG G S P S VH LRA D +L+G TV D P L CR Sbjct: 182 TTNGRIG-GGYLSSP----ESLEHVHRLRAVVDELLIGGSTVRTDRPTLDCRF 229 >gi|28572847|ref|NP_789627.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27] gi|28410980|emb|CAD67365.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27] Length = 371 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 21/308 (6%) Query: 21 HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEP 78 H + NP V C+I+ +D +I +G G HAE+ AL A + A +TLEP Sbjct: 25 HGPVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSEPYAAVITLEP 84 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137 CS G++ PC + +++ G++ VV V DP+ G + LS+ G+ I ++E E Sbjct: 85 CSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITYGVLEREVWGL 140 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 ++ +V K + K A D + S ITG ++ H++R+Q DAI +G Sbjct: 141 CAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIRSQVDAIAIGS 200 Query: 198 GTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 T+ D+P L L P +I + S TA E V Sbjct: 201 NTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS------NTAGRGSC----ELGRCV 250 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 F ++ I+ +DLKK + L GV SLL+EGG + SF+ LVD +Y Sbjct: 251 RGHEFFARDPTIL--SGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDLVDEFYIYT 308 Query: 316 SQIVIGEG 323 + ++G G Sbjct: 309 APKLLGGG 316 >gi|162146949|ref|YP_001601410.1| riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785526|emb|CAP55097.1| Riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus PAl 5] Length = 366 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 135/313 (43%), Gaps = 47/313 (15%) Query: 21 HVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA---RGATAYVTL 76 ++G T+ P V C I+ G ++ G PHAE AL + E+ R + A VTL Sbjct: 29 YMGATAPKPPVGCAILDARGEILTVAGHHRAGAPHAEALALRQCAEQGLMDRASVAVVTL 88 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 EPC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E+ G++ Sbjct: 89 EPCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGEL 148 Query: 137 --------------FLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKN 181 + ++ R+ +T+K AV D +MI A G T + Sbjct: 149 LPDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPA--GRTTFTSDAALT 206 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKT 239 H LR +DA++ G GTVLAD P L R R ++ D ++ D + Sbjct: 207 LAHRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPEDWRA--- 263 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A R + ++ CD D+ +L +L GV LVE G A+ Sbjct: 264 -------------------AARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALL 302 Query: 300 HSFINSRLVDSII 312 + + L D + Sbjct: 303 DALRAAGLWDDWL 315 >gi|222823268|ref|YP_002574841.1| riboflavin biosynthesis protein [Campylobacter lari RM2100] gi|222538489|gb|ACM63590.1| riboflavin biosynthesis protein [Campylobacter lari RM2100] Length = 330 Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 78/254 (30%), Positives = 121/254 (47%), Gaps = 37/254 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +M+ A+ + + LT NP+V C+I+ K+G ++ G HAE++A+ +A +E Sbjct: 6 YMNLAIDEAWKYQFLTYPNPAVGCVILDKNGKILSIKAHKEAGKAHAELEAVSKALKELD 65 Query: 68 ------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +GATAYV+LEPC+H G++PPCA+ E G V + Sbjct: 66 PNLDLPQDANDLHEFICKNHQGLLKGATAYVSLEPCNHQGKTPPCAKLFSELGFSEVFIA 125 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + D SG G+++L KGI V + E K L +L Q K S K+A+S Sbjct: 126 IKDEHKLASG-GVEFLKSKGIKVQIGICEKRAKELLKPFLKWQ--KSSFKIFKLALS--- 179 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + + G + ++ S+ H LR++ D ++VG T+ D P L RL Q +P Sbjct: 180 -LNGSASGKI-VSSKASRAYAHALRSKLDLLVVGGETIRHDRPILDARL--AQAKAPNLC 235 Query: 223 ILDPHFKLSLDSKI 236 IL S D KI Sbjct: 236 ILSHQNLESFDQKI 249 >gi|315497946|ref|YP_004086750.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Asticcacaulis excentricus CB 48] gi|315415958|gb|ADU12599.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Asticcacaulis excentricus CB 48] Length = 147 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 6/141 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+R M+ A+ + +G T NP V C+IVKDG+VI T GG PHAE AL + Sbjct: 3 DSRHMARAIAMATAQLGRTVPNPPVGCVIVKDGVVIAEAATGDGGRPHAEEAALAQLDHR 62 Query: 67 ARGATAYVTLEPC---SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 A GATAYVTLEPC SH G S C+Q ++E G+ RVV DP S G+ +S+ G Sbjct: 63 AEGATAYVTLEPCGARSHGGLS--CSQRLVEAGVSRVVFACHDPSPFASHLGIICMSEAG 120 Query: 124 IIVDR-MMESEGKIFLHAYLT 143 + V+ +M E + ++ Sbjct: 121 LKVETGLMADEAAALIADFVN 141 >gi|28493654|ref|NP_787815.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma whipplei str. Twist] gi|28476696|gb|AAO44784.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Tropheryma whipplei str. Twist] Length = 371 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 89/310 (28%), Positives = 141/310 (45%), Gaps = 25/310 (8%) Query: 21 HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EARGATAYVTLEP 78 H + NP V C+I+ +D +I +G G HAE+ AL A + TA +TLEP Sbjct: 25 HGPVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSEPYTAVITLEP 84 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137 CS G++ PC + +++ G++ VV V DP+ G + LS+ G+ I ++E E Sbjct: 85 CSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITYGVLEREVWGL 140 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 ++ +V K + K A D + S ITG ++ H++R+Q DAI +G Sbjct: 141 CAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIRSQVDAIAIGS 200 Query: 198 GTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE--NDD 253 T+ D+P L L P +I + S ++ + L + E D Sbjct: 201 NTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS-NTAGRGSCELGRCVRGHEVFARD 259 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 P + +DLKK + L GV SLL+EGG + SF+ LVD + Sbjct: 260 PTI-------------LSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVREDLVDEFYI 306 Query: 314 YRSQIVIGEG 323 Y + ++G G Sbjct: 307 YTAPKLLGGG 316 >gi|121612362|ref|YP_001001265.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] gi|121504161|gb|EAQ72749.2| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] Length = 336 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 135 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG +F + +D ++++S + E + PL NF + Sbjct: 279 -------LMYEGGENFLKTFKDG--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 323 RNFLGSDT 330 >gi|89074668|ref|ZP_01161133.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp. SKA34] gi|89049606|gb|EAR55166.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp. SKA34] Length = 146 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/137 (40%), Positives = 75/137 (54%), Gaps = 1/137 (0%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL S + NP V C++VK+G ++ G T G HAE AL Sbjct: 10 FMIRALLLSHQSLPDCRPNPPVGCVLVKNGEIMSEGFTQPPGQYHAEAMALANYHGSFTD 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPCS GR+P CA +E GI++VVV DPD R SG+G+ L + G+ V+ Sbjct: 70 VTAYVTLEPCSFVGRTPSCAHTFVELGIKKVVVATLDPDSRNSGKGIAILKEAGVEVEVG 129 Query: 129 MMESEGKIFLHAYLTRQ 145 + E+E F+ YL + Sbjct: 130 LCENEVLDFIEPYLIKN 146 >gi|325860399|ref|ZP_08173511.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS 18C-A] gi|325482057|gb|EGC85078.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS 18C-A] Length = 380 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 63/166 (37%), Positives = 86/166 (51%), Gaps = 6/166 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G H+EV A Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHSEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 ++ L + GI V ++E E ++T R ++ LK A ++ Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTK 166 >gi|254418857|ref|ZP_05032581.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Brevundimonas sp. BAL3] gi|196185034|gb|EDX80010.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Brevundimonas sp. BAL3] Length = 208 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 66/177 (37%), Positives = 93/177 (52%), Gaps = 6/177 (3%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 +TLK+A S D I A S ITG ++ + H LRA DAILVG+ TVL DDPELT R Sbjct: 2 RVTLKLATSLDGRIATATGESRWITGEAARLEGHRLRAGHDAILVGVETVLKDDPELTAR 61 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L G P+R++LD + +K+ L I+ PV A R+ + Sbjct: 62 LPGRSVDQPLRVVLDSRLRTPATAKLAGENTL---ILTAVEPQPVGAAQVRR--VEAEDE 116 Query: 271 DCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 D R + +L L GV S+L+EGG VA +F+ + VD + +R+ I++G G P Sbjct: 117 DGRPAIPAVLKALKAAGVDSVLIEGGGQVAAAFLRAGAVDRLEWFRAPILLGGEGRP 173 >gi|86152942|ref|ZP_01071147.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni HB93-13] gi|167006160|ref|ZP_02271918.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] gi|85843827|gb|EAQ61037.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni HB93-13] Length = 326 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 158/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG +F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKTFKDG--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|170084365|ref|XP_001873406.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650958|gb|EDR15198.1| predicted protein [Laccaria bicolor S238N-H82] Length = 237 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 108/235 (45%), Gaps = 17/235 (7%) Query: 137 FLHAYLTRQVEK----RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL + L R ++ R H+TL A S D I + ++G S H LR+ DA Sbjct: 5 FLISLLARYSQQPPSIRPHVTLTFAQSTDAKIAAIPGKQLILSGDESMQMTHWLRSMHDA 64 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIV 248 ILVGIGT L DDP+L R + P IILD H +LS K++ P II Sbjct: 65 ILVGIGTALNDDPQLNTRRLPPPHNLPRPIILDSHLRLSTSCKLLNNFRAGSGRRPWIIS 124 Query: 249 TENDDPVL---ALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 T + DP A + NII + + +L L R V SL+VEGGA V S Sbjct: 125 TPSQDPSWISRKDALEQAGANIIEIPSLNGRLSVPAVLQSLRDRDVRSLMVEGGATVIAS 184 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 F ++ +VD++I+ + ++G+ G+ L + + F G D ++ Sbjct: 185 FFSASVVDTLIITTAPTLVGDNGLGYTLAGSH--QQFTLAHTQLLGKDTVTSWVA 237 >gi|167849555|ref|ZP_02475063.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei B7210] gi|167922717|ref|ZP_02509808.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei BCC215] Length = 94 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 57/90 (63%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFII 93 GE ARGATAYVTLEPC+H+GR+PPCA ++ Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALV 94 >gi|167828089|ref|ZP_02459560.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9] Length = 97 Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 46/90 (51%), Positives = 57/90 (63%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFII 93 GE ARGATAYVTLEPC+H+GR+PPCA ++ Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCANALV 94 >gi|57168828|ref|ZP_00367959.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228] gi|305432431|ref|ZP_07401593.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20] gi|57019875|gb|EAL56558.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228] gi|304444470|gb|EFM37121.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20] Length = 326 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 162/368 (44%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 +M+ AL + + LT NP+V C+I+ K+ ++ GC HAE+ A+ A Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIAHAFTNLN 64 Query: 64 -----GEEA---------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +EA + + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + ++ +G ++L ++G+ ++ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDEN-EIASKGAEFLKKQGVEIEFGVLKDEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +R+ D +++G T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARL--CKGKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ ++ R+ IY + K Sbjct: 235 ILSHQNLENFDKSI-----------------PLFSVPHRQ-----IYTQIPNKAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKKFKDE--MDMFLIFQSSSLNDEKNVTMPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|229589688|ref|YP_002871807.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens SBW25] gi|229361554|emb|CAY48431.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens SBW25] Length = 156 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/126 (42%), Positives = 69/126 (54%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP + + FM AL R + NP V C++V+D +VI +G T G HAE AL Sbjct: 1 MPNTLSNTDFMQLALAQGRLALPECLPNPPVGCVLVQDNMVISQGYTQAPGFHHAEAMAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E TA+VTLEPCS +GR+P CA +I G+ V V + DPD R SG G++ L Sbjct: 61 SRLTNECSAVTAFVTLEPCSFHGRTPSCALALINSGVETVFVGLLDPDPRNSGAGIRMLR 120 Query: 121 QKGIIV 126 GI V Sbjct: 121 DAGITV 126 >gi|167898152|ref|ZP_02485554.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894] Length = 90 Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 46/86 (53%), Positives = 55/86 (63%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL EA Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCA 89 GE ARGATAYVTLEPC+H+GR+PPCA Sbjct: 65 GERARGATAYVTLEPCAHFGRTPPCA 90 >gi|145637248|ref|ZP_01792909.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittHH] gi|145269500|gb|EDK09442.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittHH] Length = 274 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 71/238 (29%), Positives = 120/238 (50%), Gaps = 16/238 (6%) Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 +V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + LK+A Sbjct: 2 KVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLA 61 Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 +S D MA S ITG +++ V +RA+S A+L TV+ADDP L R + E+ Sbjct: 62 MSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPEN 121 Query: 218 -----------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 P+R+ILD ++ K+ T +PV +V+ + F Sbjct: 122 LKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLTH--SPVWLVSSETRDL--TGFPDFCEQ 177 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 178 IILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNA 235 >gi|260943049|ref|XP_002615823.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720] gi|238851113|gb|EEQ40577.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720] Length = 243 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/202 (33%), Positives = 103/202 (50%), Gaps = 17/202 (8%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL Q R +TL A S D+ I A I+ +K H LRA D+ILVG Sbjct: 13 FLKEYLPSQRTDRPFVTLTWAQSLDSRIAAAPGLQTKISHAETKTMTHYLRANHDSILVG 72 Query: 197 IGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTAL-----LAPVIIV-- 248 IGTVLADDP+L CR +S +R +++DPH K + LAP I+V Sbjct: 73 IGTVLADDPKLNCRYG----NSHIRPVVVDPHGKWDYSKSTLHKVCAEGKGLAPFILVGA 128 Query: 249 -----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +EN + A + I+ + +++L +L + + S+++EGGA V +S + Sbjct: 129 QVSPSSENKTNLSAQGGQFITIDFSLDRSLNWQRILHVLHQKDIASVMIEGGADVINSLL 188 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 S LVDS+I+ + +G+ G+ Sbjct: 189 KSDLVDSVIVTVGPVFLGKDGV 210 >gi|329848658|ref|ZP_08263686.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] gi|328843721|gb|EGF93290.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] Length = 299 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/119 (46%), Positives = 70/119 (58%), Gaps = 3/119 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ +R G T NP+V C++VKD +V+G G T GG PHAE AL+ AG+ ARG Sbjct: 101 FMRQAIALAR--PGHTWPNPAVGCVLVKDDVVVGEGATGDGGRPHAEENALDMAGDVARG 158 Query: 70 ATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 ATAYVTLEPC C++ ++ G+ RVV DDP S G Q L GI V+ Sbjct: 159 ATAYVTLEPCGKRSTGCASCSERLVAAGVARVVYACDDPSPFASHVGPQRLRDAGITVE 217 >gi|254445886|ref|ZP_05059362.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium DG1235] gi|198260194|gb|EDY84502.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium DG1235] Length = 377 Score = 97.1 bits (240), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 147/354 (41%), Gaps = 15/354 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-G 69 M AL +R G T P + +V+ G V+ G EV+ E G + + G Sbjct: 1 MKVALEEARKGWGCTHPQPMIGAALVEAGQVVATSYIEQPGSTAPEVRLFERLGRKPKEG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A+ ++TLEP R + II+ G+ VV+ DP + +G L + G+ V+R Sbjct: 61 ASLFLTLEPGPSSNRLESGVRAIIDSGVSYVVIGASDPMPEHANKGADALKEGGVKVERR 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHI-TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E L+ V+ R I K A + D I S ITG ++ V R Sbjct: 121 ILIEDCEDLNIISNFWVQNRIPIFAAKSATTLDGKIACRSGESKWITGEQARQNVMKWRR 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI--IKTALLAPVI 246 +I VG GT++ DDP LT R+ G E PMR + D + ++ + I T Sbjct: 181 LFPSIAVGAGTLVEDDPRLTSRIEGEPEWCPMRFVFDGLLRTAMGQYLPSIYTDDFRDNT 240 Query: 247 IVTENDDPVLALAFR--KKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAH 300 IV D R + +N+ ++K ++ R G+ + EGG+ + Sbjct: 241 IVVTTDAAGTGYIRRLETEGVNVWVLPVENMKVPFSVFRKRCADVGINGVYFEGGSRLVS 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 ++ R ++ YR+ I++G+ S EK VR + FG D Sbjct: 301 ELLHMRELNYHFNYRAPILLGDDKAKSVYRGLRTEKLAQAIRLEKVRHEMFGDD 354 >gi|296112128|ref|YP_003622510.1| riboflavin-specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Leuconostoc kimchii IMSNU 11154] gi|295833660|gb|ADG41541.1| riboflavin-specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Leuconostoc kimchii IMSNU 11154] Length = 248 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 107/229 (46%), Gaps = 11/229 (4%) Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 G+RRVVV DP+ +G+G+ L G+ VD + + + K+ ++ L Sbjct: 4 WGLRRVVVGSIDPNPTTNGQGIALLKAAGVEVDVLNTNHSACLNPEFYYYFQSKKPYVQL 63 Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K+ VS+D + +T + VH RA AI++G T+L D P+LT RL + Sbjct: 64 KLVVSKDGFVSAGHHKRTKLTDARADIDVHQERAAKSAIMIGSQTLLVDQPQLTVRLVAI 123 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 PMR+++D +L II TEN +AF +N N +Y Sbjct: 124 DHQQPMRVVIDRRGRLQNSHFDFSNRW----IIYTEN------VAFANQNHN-VYLMTHG 172 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L +L L + + S+++EGG + ++FI L +++Y + +G G Sbjct: 173 LAGVLRHLAQQNIQSVMIEGGPKLMNAFIAENLWQEMLIYETNATLGSG 221 >gi|148925766|ref|ZP_01809454.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845776|gb|EDK22867.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp. jejuni CG8486] Length = 336 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 157/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 135 VKDGNKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 244 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG +F + +D ++++S + E + PL NF + Sbjct: 279 -------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 323 RNFLGSDT 330 >gi|254168441|ref|ZP_04875285.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|197622496|gb|EDY35067.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] Length = 217 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 18/215 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+LT Sbjct: 3 RPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPKLT 62 Query: 209 CRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 + + +P+R++LD ++ +++++ + +A II T + + L N I Sbjct: 63 VKEKYVVNAKNPVRVVLDSKLRIPQNARVLNS--MAKTIIATTENAKLGEL-----NAEI 115 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + C + DL+ LL L RG+ S++VEGG V SF+ LVD + ++ +VIG G Sbjct: 116 VICGKNKVDLRCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGGGA- 174 Query: 326 PSPLEEGYLEKNFMCVRRDYF------GSDVCLEY 354 S L EG KN V R F GS + L Y Sbjct: 175 -SSLVEGIGAKNENEVIRLKFLECKPLGSGILLRY 208 >gi|327400817|ref|YP_004341656.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus veneficus SNP6] gi|327316325|gb|AEA46941.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus veneficus SNP6] Length = 226 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 8/183 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R H+ + +A S D I + I+ +V LRA+SDAI+VGIGTVL+DDP LT Sbjct: 6 RPHVFINVAASADGRISDESRRQIRISCEEDMQRVDRLRAESDAIVVGIGTVLSDDPRLT 65 Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L+E +P+R+++D + L+++++ V + D+ +A Sbjct: 66 VKSQALREERVKNGRTPNPLRVVVDSRARTPLNARVLDGEAETLVAVSDLADEERVAALR 125 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K ++ + + DL+ L+ L GV ++VEGGA + HS I LVD I++Y ++I Sbjct: 126 EKASVFVAGQEKVDLRALMEYLYSIGVRRVMVEGGARLNHSLIAEGLVDEIMVYYGGMII 185 Query: 321 GEG 323 G G Sbjct: 186 GNG 188 >gi|315639223|ref|ZP_07894385.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis JV21] gi|315480549|gb|EFU71191.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis JV21] Length = 327 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 115/231 (49%), Gaps = 35/231 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 +MS AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA Sbjct: 5 YMSLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKLLK 64 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + + ATA+VTLEPC+H G++PPCA+ ++V V Sbjct: 65 PEFNFPKEPNALHEFILTNHQKLLQNATAFVTLEPCAHQGKTPPCAKLFSTLEFKKVFVS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L Q GI+V+ ++E EG+ L +L Q K + K+A+S Sbjct: 125 VKDENQIASG-GAEFLRQNGILVEMGILEKEGRELLKPFLKWQ--KGAFKLFKLALS--- 178 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 + + G ++ S+ H +R+ D ++VG GT+ D P L RL G Sbjct: 179 -LNGSALGKF-VSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG 227 >gi|259506813|ref|ZP_05749713.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens YS-314] gi|259165599|gb|EEW50153.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens YS-314] Length = 254 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 75/248 (30%), Positives = 111/248 (44%), Gaps = 35/248 (14%) Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G VD + Sbjct: 1 PCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAG--VDTHLLGLPVPT 57 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L +L R HITLK A + D S ITG ++ VH R + DAI+VG Sbjct: 58 LSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDAIIVGT 117 Query: 198 GTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 GT L D+P LT R GL +H P R+++ PV Sbjct: 118 GTALTDNPSLTARGPAGLYDHQPRRVVI--------------------------GRRPVP 151 Query: 257 ALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A N++ + + + + L L G +L+EGG +A + + + L+D+I Y Sbjct: 152 A----GSNLDRLGFEQYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDAIRAYV 207 Query: 316 SQIVIGEG 323 + ++G G Sbjct: 208 APAILGAG 215 >gi|283957008|ref|ZP_06374480.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 1336] gi|283791509|gb|EFC30306.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 1336] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNDLSRTYTHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|57238634|ref|YP_179765.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni RM1221] gi|57167438|gb|AAW36217.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni RM1221] gi|315059073|gb|ADT73402.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni S3] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|283953762|ref|ZP_06371293.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794803|gb|EFC33541.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni subsp. jejuni 414] Length = 326 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 69/229 (30%), Positives = 114/229 (49%), Gaps = 35/229 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ + A Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGFAHAELNTIAHAFKNLN 64 Query: 64 -----GEEA---------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +EA + + A+VTLEPCSH G++PPCA+ + G ++V + Sbjct: 65 PEISLPKEANAMHKFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSDLGFKKVFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G +L ++GI V+ ++E EGK L +L Q E+ K+A+S + Sbjct: 125 VKDENKVASG-GADFLKKQGIEVEFGILEEEGKKLLKPFLKWQKEQFK--LFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + G + ++ +S+ H +RA D ++VG T+ D P L RL Sbjct: 182 ----SPFGKI-VSNELSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL 225 >gi|296114200|ref|ZP_06832855.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii ATCC 23769] gi|295979276|gb|EFG85999.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii ATCC 23769] Length = 357 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 73/219 (33%), Positives = 102/219 (46%), Gaps = 21/219 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL---EEAG 64 R AA+ + HVG T+ NP V C I+ G ++ G G PHAE +A+ E G Sbjct: 21 RAFRAAVADAVRHVGATAPNPPVGCAILDAAGTILCTGAHHRAGTPHAEARAIALCRERG 80 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 R T VTLEPC+H GR+ PC+Q I+ IR V + DP+ V+G G +L G Sbjct: 81 LIERAHTIVVTLEPCNHTGRTGPCSQAIMHTPIRTVWIGATDPNPNVAGGGADFLRDHGC 140 Query: 125 IVDRMMESEGK-------------IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 V R++ G I A+L R R+ +T+K AV + G Sbjct: 141 DV-RLLSDMGTYDAAELARLCRGLITPFAHLART--GRAWVTVKQAVDATGSM-RPPAGR 196 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 T + + H LR +DA++ GT+ AD P L R Sbjct: 197 TTFTSATALDLAHRLRRATDAVVTATGTITADRPGLDVR 235 >gi|330991420|ref|ZP_08315371.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1] gi|329761439|gb|EGG77932.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1] Length = 339 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/304 (29%), Positives = 134/304 (44%), Gaps = 37/304 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 A AA+ + HVG+T+ NP V C L+ +DG ++ G G PHAE+QA+ + Sbjct: 11 AHGFRAAVDEAARHVGVTAPNPPVGCALLDRDGTILAVGGHHRAGTPHAEIQAINQCRAR 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G R TA VTLEPC+H GR+ PC+ + +R V + + DP+ V+G G +L +G Sbjct: 71 GLLDRAHTAVVTLEPCNHTGRTGPCSHALAATPVRDVWIGLRDPNPHVAGGGAGYLRSQG 130 Query: 124 IIVDRMMESEG---------KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 V +++ G + L + + IT+K AV + + G Sbjct: 131 RSV-HVLQPTGPQAAPRDLCRSLLAPFAHFARTGQPWITVKQAVDATGSM-LPPPGRTTF 188 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T S + H LR +DA++ T+ AD P L R R+ D Sbjct: 189 TAATSLDLAHRLRRATDAVITTGRTIRADRPGLDVR----------RVP---------DH 229 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +LA E DD L A R + ++ C D+ L +L GVT +VE Sbjct: 230 TGRAPRVLAICTRTGEVDDAYLTAA-RNRGFDVRLCT--DIAALPDLLGRAGVTWAMVEA 286 Query: 295 GAAV 298 G A+ Sbjct: 287 GPAL 290 >gi|205355636|ref|ZP_03222406.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346413|gb|EDZ33046.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni CG8421] Length = 326 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 154/368 (41%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDTRL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K L Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKFLMYE 272 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 G + +G +D ++++S + E + PL NF + Sbjct: 273 GGENFLKIFKDG-------------IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|50426769|ref|XP_461982.1| DEHA2G10010p [Debaryomyces hansenii CBS767] gi|54036250|sp|Q6BII9|RIB7_DEBHA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49657652|emb|CAG90452.1| DEHA2G10010p [Debaryomyces hansenii] Length = 247 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 37/216 (17%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL R R +TL A S D+ I I+ +K H +R++ D I+VG Sbjct: 13 FLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 72 Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTAL-----LAPVIIVT 249 IGTVLADDP+L CR + +P IILDP K + +++ LAP I++ Sbjct: 73 IGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILID 132 Query: 250 E-----NDD--------------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 E N+D P+L A + N NII LKKL + G+ S+ Sbjct: 133 ETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNII------LKKLFQL----GIKSI 182 Query: 291 LVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325 +VEGGA++ + + S+++DS+I+ + +G+ G+ Sbjct: 183 MVEGGASIINDLLVYSKIIDSLIITIGPVFLGKDGV 218 >gi|147921689|ref|YP_684491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured methanogenic archaeon RC-I] gi|110619887|emb|CAJ35165.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase (riboflavin-specific deaminase) [uncultured methanogenic archaeon RC-I] Length = 226 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 100/189 (52%), Gaps = 11/189 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP LT Sbjct: 4 RPYTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRAGSDAVMVGIGTVLADDPSLT 63 Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R+ ++ +P R+++D + + I K +++V++ P +A Sbjct: 64 VKSEERRKRRVAEGKDENPARVVVDSQARTPPTADIFKKGTGKRIVVVSQA-APADRVAA 122 Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 K+ II C D DL+++ L RG+ L++EGGA + ++ ++ RLVD I ++ + Sbjct: 123 LKEKAEIIVCGKDEVDLEQMSVELKKRGINRLMIEGGATLNYAMVSRRLVDEISVFVGNL 182 Query: 319 VIGEGGIPS 327 +IG P+ Sbjct: 183 IIGGKDAPT 191 >gi|268678892|ref|YP_003303323.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum DSM 6946] gi|268616923|gb|ACZ11288.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum DSM 6946] Length = 338 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 108/238 (45%), Gaps = 36/238 (15%) Query: 3 VSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 V++ D M AL + WH LT NP+V ++ D G ++G G G PHAEV AL Sbjct: 2 VNALDNALMQKALD-AAWHYQVLTFPNPAVGAVVSNDAGEILGMGAHRKAGTPHAEVLAL 60 Query: 61 EEA----GEEAR-----------------------GATAYVTLEPCSHYGRSPPCAQFII 93 +EA + R + +VTLEPC H+G++PPC+ I Sbjct: 61 KEAYLTLTHDTRIEALSDSMALHLFLKENHQHLFSNLSLHVTLEPCHHFGKTPPCSSLIE 120 Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 GI+RVV+ D +R G G +L +G+ V E L T + +K I Sbjct: 121 ALGIKRVVIGSYDESLRAKGGG-AYLQSRGVDVSFGCLKEACDTLLTPFTCKEKKEPFIF 179 Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 K+A+S N + G IT S+ VH LR D +++G TV D P L RL Sbjct: 180 YKLALSA-NSVATGGT----ITSLESRTMVHRLRDCCDLMVIGGNTVRVDRPTLDARL 232 >gi|58039442|ref|YP_191406.1| bifunctional riboflavin biosynthesis protein RibD [Gluconobacter oxydans 621H] gi|58001856|gb|AAW60750.1| Bifunctional riboflavin biosynthesis protein RibD [Gluconobacter oxydans 621H] Length = 349 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/307 (29%), Positives = 138/307 (44%), Gaps = 44/307 (14%) Query: 23 GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTL 76 G T+ NPSV C L+ +G ++ GV G PHAE AL +A ++AR A VTL Sbjct: 32 GATAPNPSVGCTLLDAEGRILTVGVHPRVGQPHAEAMALAQARAAGVLDQAR--VALVTL 89 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRM-- 129 EPC+H GR+PPC++ + +R V + DP+ + +G R + ++ DR Sbjct: 90 EPCNHTGRTPPCSEALRNSPVREVWIGAADPNPQAAGGAARLREMPAGKHVVMLADRPDM 149 Query: 130 --MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + L + +R V R I++K A+ ++ + + G T S H LR Sbjct: 150 TDLARNCRALLAPFASRVVRHRPWISVKQALDENGSM-VPPPGQKTFTSPDSLTLAHRLR 208 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIIL--DPHFKLSLDSKIIKTALLAPV 245 +DAI+ G+GTVLAD P T R E R+++ D H +L D V Sbjct: 209 RATDAIITGVGTVLADRPRFTVRHVADHEGRSPRLLVVCDRHGRLPADW----------V 258 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +TE VL DL + +L RGV ++E G A+ S + Sbjct: 259 SEMTEAGFEVLT--------------SSDLLSVPAMLAERGVNWAMIEAGPALLASVAKA 304 Query: 306 RLVDSII 312 L D + Sbjct: 305 GLWDDWL 311 >gi|302868567|ref|YP_003837204.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] gi|302571426|gb|ADL47628.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] Length = 295 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 S+ + M A+ S +G TS NP V C+I+ + G +G G G HAEV AL Sbjct: 2 ASNVELAAMRQAIILSSLGLGTTSPNPPVGCVILDRHGATVGAGYHRRKGEAHAEVNALS 61 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A G TA VTLEPC+H G +P C Q +I+ GI RVV+ + DP R G G L+ Sbjct: 62 AAGPAALGGTAVVTLEPCNHVGVTPACRQELIDAGIARVVISLIDPTSRGEG-GAAVLTA 120 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV-SQDNMI 164 GI V+ ++ E L +LT +R ++T A+ QD+ I Sbjct: 121 HGIDVETNVLPDETLTVLGPWLTAIRRRRPYLTWAYALEGQDSQI 165 >gi|315927631|gb|EFV06962.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 336 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCIILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 244 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 279 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 323 RNFLGSDT 330 >gi|86149383|ref|ZP_01067614.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596073|ref|ZP_01099310.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 84-25] gi|85840165|gb|EAQ57423.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190914|gb|EAQ94886.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 84-25] Length = 326 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 5 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 64 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 65 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 125 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 181 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 234 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 235 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 268 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 269 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 312 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 313 RNFLGSDT 320 >gi|218563211|ref|YP_002344991.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360918|emb|CAL35719.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926817|gb|ADC29169.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni IA3902] Length = 336 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/368 (25%), Positives = 156/368 (42%), Gaps = 79/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L +L Q K K+A+S + Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQ--KGQFKLFKLALSMNG 191 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 244 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 245 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 278 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 279 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 322 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 323 RNFLGSDT 330 >gi|289705541|ref|ZP_06501933.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58] gi|289557770|gb|EFD51069.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58] Length = 377 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 98/327 (29%), Positives = 145/327 (44%), Gaps = 42/327 (12%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--------- 62 AALR G+ NP V ++ + G V+ G G HAEV AL Sbjct: 18 AALR------GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALTRWRAARAADP 71 Query: 63 --AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A + G T +VTLEPC H G + PC+Q +++ GI + V DP G G L+ Sbjct: 72 ALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTGH-DGGGAARLA 130 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEK--RSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V + L A R+V R +T +A S D A S ITG Sbjct: 131 AHGVRVTGPTGEAAALALSARW-REVRDAGRPWVTGHLAQSLDGHAAAADGTSRWITGPD 189 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236 S+ H +R++ DAI+VG GTVLADDP LT R E H P+ ++ + D Sbjct: 190 SRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVVQG--HRPVPDGVA 247 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 ++ PV++ + DP LA + GR +L+EGG Sbjct: 248 LRR---HPVVLEVPDHDPHAVLAALAAHPGPWPH-------------GRRAEHVLIEGGP 291 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 V +++ + LVD +++Y + +++G G Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPG 318 >gi|57505260|ref|ZP_00371189.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis RM3195] gi|57016396|gb|EAL53181.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis RM3195] Length = 327 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 114/231 (49%), Gaps = 35/231 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 +M+ AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA Sbjct: 5 YMNLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKVLK 64 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + + ATA+VTLEPC H G++PPCA+ ++V V Sbjct: 65 PEFNFPKEPNVLHEFILTNHQKLLQNATAFVTLEPCVHQGKTPPCAKLFSTLEFKKVFVS 124 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L QKGI+V+ ++E EG+ L +L Q + K+A+S Sbjct: 125 VKDENQIASG-GAEFLRQKGILVEMGILEKEGRELLKPFLKWQ--NGTFKLFKLALS--- 178 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 + + G ++ S+ H +R+ D ++VG GT+ D P L RL G Sbjct: 179 -LNGSALGKF-VSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG 227 >gi|310792224|gb|EFQ27751.1| riboflavin-specific deaminase domain-containing protein [Glomerella graminicola M1.001] Length = 269 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 65/208 (31%), Positives = 108/208 (51%), Gaps = 26/208 (12%) Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 A + + + R +TL A S D+ + +A ++G SK H LR Q DAILVG+GT Sbjct: 24 AIQSAETQSRPFVTLTFATSLDSSLSLAPGVRTRLSGPESKAMTHHLRRQHDAILVGVGT 83 Query: 200 VLADDPELTCRLNGLQ-EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTEND 252 VLADDP L CR+ G + P I++DP + + +K+ + A LAP +++ Sbjct: 84 VLADDPGLNCRIAGAGLDAQPRPIVVDPRGRWDFTEHNKVFEVARAGKGLAPFVLIGST- 142 Query: 253 DPVLALAFRKKNI------NIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAH 300 A+ +KK+I + D + D + +L++L G+ S++VEGG V + Sbjct: 143 ---AAVHSKKKSILEAHGGKFVVLDAKETEPRFDWQSILSVLHSEGLHSVMVEGGGQVIN 199 Query: 301 SFIN---SRLVDSIILYRSQIVIGEGGI 325 S +N + VD++I+ + +G GG+ Sbjct: 200 SLLNPDSQQFVDTVIVTVAPTWLGRGGV 227 >gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus tauri] gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus tauri] Length = 655 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 96/358 (26%), Positives = 158/358 (44%), Gaps = 26/358 (7%) Query: 23 GLTSTNPSVACLIVK-DGIV-IGRGVTAYGGCPHAE---VQALEEAGEEARGATAYVTLE 77 G ++ +P AC I +G + RG G AE V+AL G RG TA V LE Sbjct: 76 GASAPHPLSACAITDANGTTRVARGHEGQGAT-RAEIACVEALVRDGVGVRGGTACVNLE 134 Query: 78 PC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD----RMMES 132 P + ++ G+RRVVV + P + GR ++ + ++GI+VD R Sbjct: 135 PVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMRERGIVVDVLDARASGL 194 Query: 133 EGKIFL------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 EG++ A L R + K A++ D I S +TG ++ +V Sbjct: 195 EGEVAARCRETNEALLYRVATGLPYSVYKYAMTLDGKIATDNGHSSWVTGAEARERVFRE 254 Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ++D I+VG TV D+P LTCR G Q P RI+L L D+++ + +AP Sbjct: 255 RKRADCIVVGGATVRKDNPRLTCREETGFQ---PARIVLSRTLNLPEDAELWRVRDVAPT 311 Query: 246 II-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 I+ T+ P R K + ++ + + + RG E G +A + Sbjct: 312 IVCTTKGARPEFQKMLRSKGVEVVEFNELTPLEAAKYMHARGFLRCFWECGGGLAAPAMK 371 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 S + ++ + + +IG P+PL G L F + + V LE +G+++ ++ Sbjct: 372 SGVFHHVMAFVAPKLIGGNSAPTPL--GDL--GFEAMHDALPLAGVTLETVGRDILVR 425 >gi|20093538|ref|NP_613385.1| pyrimidine reductase [Methanopyrus kandleri AV19] gi|19886379|gb|AAM01315.1| Pyrimidine reductase [Methanopyrus kandleri AV19] Length = 235 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 12/215 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + ++ D + + G I+G +VH LRA+ DA+ VGI TV DDP L Sbjct: 3 RPKVLYNVGMTADGKV-VTAAGDSRISGEEDLKEVHRLRAEHDAVAVGINTVRKDDPMLN 61 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 RL ++ P+R++ D + LD ++++TA P +++ DP K+ + + Sbjct: 62 VRL--VEGEDPIRVVFDTECSIPLDCRLVRTARDIPTVVLCAEADPGRVEKLEKRGVKVE 119 Query: 269 YC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 D D+++ L +L GV +LL+EGG +A SF+ L+D + + +++G Sbjct: 120 EVGACEDGVDVERGLELLYDMGVRTLLLEGGPTLAWSFLKRGLIDEFRVAVAPVLVGGSD 179 Query: 325 IPSPLE-EGY----LEKNFMCVRRDYFGSDVCLEY 354 +P+E EG+ L R + G DV L Y Sbjct: 180 ALTPVEGEGFPRVDLGVGLELKRVERVGRDVVLWY 214 >gi|83858225|ref|ZP_00951747.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] gi|83853048|gb|EAP90900.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/214 (32%), Positives = 102/214 (47%), Gaps = 18/214 (8%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 +TLK+A S D I +A S ITG ++ +VH +RA DAIL GIGTVLADDP++T R Sbjct: 2 QVTLKLATSLDGRIALANGQSQWITGPEARAEVHRMRASHDAILTGIGTVLADDPQMTAR 61 Query: 211 LNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 +G L P RI+LD +L ++I+ PV + +N+ + Sbjct: 62 PDGALANRQPQRIVLDSQLRLPAYAEILTG---EPVWVFHTG-----GARSDLENVELFE 113 Query: 270 CDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + D ++ L RGV S+++E G +A + I S V I +R+ +IG G Sbjct: 114 TEADDGGRVSFSAVMQSLAARGVGSVMIEAGREIAGAAIRSDCVTRIEWFRAPRLIGAEG 173 Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 LEE L F + G+D+ Y Sbjct: 174 RACIAGLGLEELSLAPTFKRMEVRACGADLWETY 207 >gi|118474836|ref|YP_892622.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. fetus 82-40] gi|118414062|gb|ABK82482.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. fetus 82-40] Length = 336 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 83/284 (29%), Positives = 125/284 (44%), Gaps = 46/284 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ A+ + LT NP+V C+I K+G ++ G PHAE+ A++ A E Sbjct: 6 YMNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKN 65 Query: 69 -----------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 G+TAYVTLEPCSH GR+PPCA + E G ++ Sbjct: 66 PAFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQ 125 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 V++ D G G Q L GI + + + L +L + S KIA+ Sbjct: 126 VIIGAIDSSENAKG-GEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSF--FKIAL 182 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQE 216 +Q+ G+A G I+ S+ H LR+ D +++G TV D P L RL NG Sbjct: 183 TQN---GIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLVKNG--- 234 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 +P ++ K D+ I +L +IV+ + D V F Sbjct: 235 KNPDILLYSKESK--FDTTIPLFNILDRRVIVSNSLDAVFERKF 276 >gi|294496137|ref|YP_003542630.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanohalophilus mahii DSM 5219] gi|292667136|gb|ADE36985.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanohalophilus mahii DSM 5219] Length = 226 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/196 (33%), Positives = 106/196 (54%), Gaps = 12/196 (6%) Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN- 212 + A+S D I V I+G + ++ LRA SDA++VGIGTVLADDP LT + + Sbjct: 8 INAAMSIDGKISTRQRRQVRISGDVDFERMDELRASSDAVMVGIGTVLADDPSLTVKSDE 67 Query: 213 --------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 GL E+ P+RI++D ++ ++ I + +I V+E+ + RKK Sbjct: 68 RRAKRLAKGLDEN-PVRIVVDSKARIPTNADIFRKGAGKIIIAVSESAAFDRVESLRKKA 126 Query: 265 INIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + I+ + DL +LL+IL G+ L+VEGGA + + + LVD I + ++IG G Sbjct: 127 MVIMAGGNQVDLPELLSILDEMGIHRLMVEGGAGLNWGLVKNGLVDEIYSFIGNLIIGGG 186 Query: 324 GIPSPLE-EGYLEKNF 338 P+ ++ EG+ E N Sbjct: 187 TAPTLIDGEGFDEANM 202 >gi|126275980|ref|XP_001387170.1| predicted protein [Scheffersomyces stipitis CBS 6054] gi|126213039|gb|EAZ63147.1| predicted protein [Pichia stipitis CBS 6054] Length = 265 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 106/221 (47%), Gaps = 22/221 (9%) Query: 137 FLHAYLTR---QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 FL YL Q +KR +TL A S D+ I I+ +K H LR++ DAI Sbjct: 26 FLEPYLPTPKIQHQKRPFVTLTYAQSLDSRIAAKKGTQTKISHLETKTMTHYLRSKHDAI 85 Query: 194 LVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTAL-----LAPVII 247 +V IGTV ADDP+L CR +HSP +ILDPH K + ++ AP II Sbjct: 86 MVAIGTVQADDPKLNCRYREDGNDHSPRPVILDPHGKWNYSESQLRAICDNKQGKAPYII 145 Query: 248 VTENDDPVLA--LAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + EN P +++N IY + +L L GV S+++EGGA V + Sbjct: 146 IEENVKPKQEDIEILQEQNGLFIYLPLSTDHSANWDLILQKLHDLGVESIMIEGGAMVIN 205 Query: 301 SFIN-----SRLVDSIILYRSQIVIGEGGIP-SPLEEGYLE 335 ++ L+DS+I+ I +G G+ SP ++ LE Sbjct: 206 ELLDFHRTQHDLIDSLIITVGPIFLGSQGVEVSPRKQVNLE 246 >gi|261886453|ref|ZP_06010492.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 330 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 69/219 (31%), Positives = 99/219 (45%), Gaps = 39/219 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-------------- 68 LT NP+V C+I K+G ++ G PHAE+ A++ A E Sbjct: 14 LTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKNPAFKQDFDEIKDTN 73 Query: 69 ---------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 G+TAYVTLEPCSH GR+PPCA + E G ++V++ D G Sbjct: 74 ELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQVIIGAIDSSENAKG 133 Query: 114 RGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 G Q L GI + + + L +L + S KIA++Q+ G+A G Sbjct: 134 -GEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSF--FKIALTQN---GIASGGV- 186 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 I+ S+ H LR+ D +++G TV D P L RL Sbjct: 187 -ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRL 224 >gi|315636537|ref|ZP_07891773.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22] gi|315479186|gb|EFU69883.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22] Length = 334 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 45/236 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL+ A + Sbjct: 5 DNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKTAYLK 64 Query: 67 ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99 + YVTLEPC+H G++P CA + E +R Sbjct: 65 DNPNSILKTKNSSFDIHQFLLHNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 V++ V DP+ + +G GL+ L + I V ++E +G + +++ Q +S I K+A Sbjct: 125 VIISVKDPNKQATG-GLETLKNENIDVTLGILEKDGLNLILPFISWQ--NKSCIFFKMAQ 181 Query: 159 SQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADDPELTCR 210 + + GS I G IS N+ VH LR + D +++G +V D P L R Sbjct: 182 TLN--------GS--IDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTR 227 >gi|219851937|ref|YP_002466369.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaerula palustris E1-9c] gi|219546196|gb|ACL16646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanosphaerula palustris E1-9c] Length = 231 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 66/213 (30%), Positives = 106/213 (49%), Gaps = 16/213 (7%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + +A+S D + V I+G I +V ++A SDAI+VGIGTVLADDP LT Sbjct: 2 RPYVFVNVAMSADGKLSTRERRQVKISGSIDFRRVDQIKAGSDAIMVGIGTVLADDPSLT 61 Query: 209 CRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALA 259 + L ++ +P+R+++D + +++ I+ ++ V E D+ L Sbjct: 62 VKDPELKAGRAARGEDENPIRVVVDSRGRTPIEAAILNKGSGQRIVAVAGEADEKNRELL 121 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K ++ + DL LL L RGV L+VEGG + S I LVD I + +V Sbjct: 122 REKADVITTGTESVDLPALLDALHARGVRRLMVEGGGTLIWSLIKEDLVDEIQTFIGNMV 181 Query: 320 IGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVC 351 IG P+ + EG+L +D+ G D+ Sbjct: 182 IGGKDAPTLADGEGFL------AAQDFVGLDLA 208 >gi|254442809|ref|ZP_05056285.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] gi|198257117|gb|EDY81425.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] Length = 151 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 55/122 (45%), Positives = 68/122 (55%), Gaps = 2/122 (1%) Query: 7 DARFMSAAL-RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AA+ R TS NP V +IV+DG ++ +G G PHAE QALE G Sbjct: 7 DESFMRAAVCEAVRGDAVKTSPNPRVGAVIVEDGEIVAKGHFERDGGPHAERQALEALGR 66 Query: 66 EAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + + GA YVTLEPCS GR+ C I+E GIRRVVV DP G G++ L G+ Sbjct: 67 KPKEGAVIYVTLEPCSTQGRTGACTDAILEAGIRRVVVGASDPTEEHRGNGVRVLEAAGV 126 Query: 125 IV 126 V Sbjct: 127 EV 128 >gi|307111161|gb|EFN59396.1| hypothetical protein CHLNCDRAFT_137887 [Chlorella variabilis] Length = 181 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 1/125 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 V+ D M AL + +G T NP+V C+IV G V+G G G PHAEV AL Sbjct: 27 VTEADRLHMRRALELAARGLGATYPNPAVGCVIVDASGRVLGEGFHPRAGMPHAEVYALR 86 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GATAYVTLEPC+H+GR+PPC++ ++ G+ RVVV DP+ V G G++ L Sbjct: 87 AAGRAAAGATAYVTLEPCNHFGRTPPCSRALVAAGVSRVVVGCTDPNPLVGGCGVKTLRD 146 Query: 122 KGIIV 126 GI+ Sbjct: 147 AGIVA 151 >gi|124485759|ref|YP_001030375.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanocorpusculum labreanum Z] gi|124363300|gb|ABN07108.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanocorpusculum labreanum Z] Length = 225 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 11/189 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + A+S D + I+G +V LRA SDAI+VGIGTVL+DDP L Sbjct: 2 RPYVIINAAMSADGKLATRERKQTKISGHDDFLRVDRLRADSDAIMVGIGTVLSDDPSLR 61 Query: 209 C---------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + NG H PMR+++D K+ D + K L VI V+E A Sbjct: 62 LKSEEHAGMRKANGKDPH-PMRVVIDSTAKMPADGDMFKKGLGRVVIFVSEKAQKEKCDA 120 Query: 260 FRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 R+K I D DL+ +L L GV L+VEGG+ + SF++S L D I +Y + Sbjct: 121 LREKATVISAGRDSVDLEIVLDELSKLGVEKLMVEGGSTLLWSFMSSGLFDEIRIYIGAL 180 Query: 319 VIGEGGIPS 327 +IG P+ Sbjct: 181 IIGGKDAPT 189 >gi|163845756|ref|YP_001633800.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aurantiacus J-10-fl] gi|222523464|ref|YP_002567934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp. Y-400-fl] gi|163667045|gb|ABY33411.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aurantiacus J-10-fl] gi|222447343|gb|ACM51609.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp. Y-400-fl] Length = 221 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 107/222 (48%), Gaps = 27/222 (12%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TL A + D + S I+G S H LRA SDAI+VG+GTVL DDP LT Sbjct: 3 RPRVTLCFAQTLDGRVAAVDGSSQWISGPESLRFCHHLRANSDAIMVGVGTVLRDDPRLT 62 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 RL + P+R+I+D H + + +I+ ++ P+ ++ I + Sbjct: 63 TRL--VAGPDPLRVIVDTHLRTPTTAAVIRDGAGTGTLLACTAAAPL------ERRIALQ 114 Query: 269 YCDCR------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 C DL LLT L RGV S++VEGGA + S + + LVD++ + + Sbjct: 115 ECGATVLTMPEAAGGGVDLAALLTALGERGVASVMVEGGARLITSLLRANLVDALAVTIA 174 Query: 317 QIVIGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLE 353 I++G G PS + + G L N V +G+DV +E Sbjct: 175 PIILGSG--PSAIGDLGILTLNQALRLTNVTWTTYGADVVIE 214 >gi|91774264|ref|YP_566956.1| hypothetical protein Mbur_2352 [Methanococcoides burtonii DSM 6242] gi|91713279|gb|ABE53206.1| 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase [Methanococcoides burtonii DSM 6242] Length = 226 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 10/193 (5%) Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-------- 208 A+S D I V I+G I +++ LRA SDAI+VGIGTVLADDP LT Sbjct: 11 AMSADGKISTKERKQVRISGDIDFDRMDELRASSDAIMVGIGTVLADDPSLTVKSRYRRD 70 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R N + P+RII+D + L++ I K ++ V+ + A KK I Sbjct: 71 TRKNKGLDEDPVRIIVDSKARTPLNADIFKKGTGMRIVAVSSSAPKEKVDALSKKATIIT 130 Query: 269 YCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 D + DL L+ L G+ L+VEGGA + +++ LVD + + I IG P+ Sbjct: 131 AGDEKVDLVLLMGQLSSMGIQRLMVEGGATLNWGLLSNGLVDEVFSFIGNIFIGGNSSPT 190 Query: 328 PLE-EGYLEKNFM 339 ++ EG+L+ +F+ Sbjct: 191 LVDGEGFLKGDFL 203 >gi|302545542|ref|ZP_07297884.1| riboflavin biosynthesis, RibD domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302463160|gb|EFL26253.1| riboflavin biosynthesis, RibD domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 238 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 14/199 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 E R ++ K A + D I A S IT S+ +VH LRA A +VG GT AD+P Sbjct: 16 EGRPYVVYKYAATLDGRIAAADSTSQWITSAESRTEVHALRAACQATVVGSGTQQADNPH 75 Query: 207 LTCRLNGLQ---------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + P R+I+D + + D++++ A AP +I +D Sbjct: 76 LAVRSAKDDPKLKVAVPVDEQPWRVIVDSNARTPADARVLDDA--APTLIAVADDVDATH 133 Query: 258 LAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 L + + + DL KLL L GRGV + +EGG +A SF++S LVD II Y + Sbjct: 134 LEGIATVVRLPRAKEGLDLGKLLGELDGRGVRGMFLEGGPTLAASFVSSGLVDRIIAYIA 193 Query: 317 QIVIGEGGIPSPLEEGYLE 335 V+G G S L+ G +E Sbjct: 194 PAVLGRG--KSALQGGTIE 210 >gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydomonas reinhardtii] gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydomonas reinhardtii] Length = 684 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 149/344 (43%), Gaps = 19/344 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVAC-LIVKDG-IVIGRGVTAYGGCPHAEVQALEEAG 64 D + AA R + G T +P+ AC L+ DG VI + G AEV A+ AG Sbjct: 46 DYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAVSAAG 105 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARG TAY+ LEP +G + ++ G+ RVVV + P + RG+ L G+ Sbjct: 106 PAARGGTAYLNLEPGDCHGEGA-AVEALVRSGVSRVVVGLRHPLRHLRSRGIGLLRNAGL 164 Query: 125 IVDRMMESEGKIFL-----------HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 V M R +R LK A++ D I S Sbjct: 165 RVGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLDGKIATNLGHSAW 224 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 ++ S+ V RA+SDA++VG TV D+P LT R G H+P RI++ L D Sbjct: 225 VSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPED 282 Query: 234 SKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + LAP I++T+ A R + + ++ D + + RG Sbjct: 283 ANLWDVT-LAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQERGFLQCFW 341 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLE 335 E G +A I S +V ++ + + +IG P+P+ E G++E Sbjct: 342 ECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVE 385 >gi|157738249|ref|YP_001490933.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter butzleri RM4018] gi|157700103|gb|ABV68263.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter butzleri RM4018] Length = 334 Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 111/236 (47%), Gaps = 45/236 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL+ A + Sbjct: 5 DNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKTAYLK 64 Query: 67 ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99 + YVTLEPC+H G++P CA + E +R Sbjct: 65 DNPNSILKTKNSSFDIHQFLLQNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 V++ V DP+ + +G GL+ L + I V +++ +G + +++ Q +S I K+A Sbjct: 125 VIISVKDPNKQATG-GLETLRNENINVTLDILKKDGLNLILPFISWQ--NKSCIFFKMAQ 181 Query: 159 SQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADDPELTCR 210 + + GS I G IS N+ VH LR + D +++G +V D P L R Sbjct: 182 TLN--------GS--IDGKISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTR 227 >gi|317053384|ref|YP_004119151.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp. At-9b] gi|316953123|gb|ADU72595.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp. At-9b] Length = 144 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 45/115 (39%), Positives = 64/115 (55%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL +SR + NP V C+IV +G+V+ +G T G HAE+ A+ Sbjct: 7 FMLLALEYSRLALPECRPNPPVGCVIVHNGVVVSKGFTQSPGHHHAEIDAISRLTFPMGE 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +VTLEPCS+ GR+P CA+ + E R + + ++DP R SG GL+ L GI Sbjct: 67 CDIFVTLEPCSYQGRTPSCARTLAEMKPRHIYIAIEDPHPRNSGEGLRILKNAGI 121 >gi|315928823|gb|EFV08089.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 305] Length = 335 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 80/368 (21%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + R Sbjct: 15 YMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKSLR 74 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 75 PEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFIS 134 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 V D + SG G ++L ++GI V+ +++ EGK L + +K K+A+S + Sbjct: 135 VKDENKIASG-GAEFLKKQGIEVEFDILKEEGKKLLKPL---KWQKGQFKLFKLALSMNG 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 + G + ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 191 ----SPFGKI-VSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNLC 243 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 IL + D I P+ + R+ IY K Sbjct: 244 ILSRQNIDNFDKNI-----------------PLFKVPNRQ-----IYTQIPSEAKF---- 277 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 278 -------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPLY 321 Query: 343 RDYFGSDV 350 R++ GSD Sbjct: 322 RNFLGSDT 329 >gi|260551097|ref|ZP_05825301.1| pyrimidine deaminase [Acinetobacter sp. RUH2624] gi|260405864|gb|EEW99352.1| pyrimidine deaminase [Acinetobacter sp. RUH2624] Length = 286 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 21/237 (8%) Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLK 155 +++VVV DP+ V+G+G+Q L GI V+ + E +L ++ LK Sbjct: 22 LKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLK 81 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGL 214 +A S D MA S ITG ++ V RA S A++ GI TV+ADD +L R L+ L Sbjct: 82 VASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNL 141 Query: 215 QEHS---PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK--NINII 268 + P R+ILD +L L +KI+ EN + V+ + +R++ ++ +I Sbjct: 142 DIETVAQPKRVILDRRGRLPLTAKIL------------ENPETVMVMGPYRQELADLGVI 189 Query: 269 YCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + LK LL L + + +LVE GA ++ +F+ LVD +I Y + ++G+ Sbjct: 190 QLEIQPLKTLLQALSKQYQIYDVLVEAGATLSTAFLQEGLVDEMISYVAPTLLGQSA 246 >gi|313681592|ref|YP_004059330.1| riboflavin biosynthesis protein ribd [Sulfuricurvum kujiense DSM 16994] gi|313154452|gb|ADR33130.1| riboflavin biosynthesis protein RibD [Sulfuricurvum kujiense DSM 16994] Length = 336 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 101/230 (43%), Gaps = 37/230 (16%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+ AL + + LT NP+V + + D G V+ G G PHAEV AL +A G Sbjct: 10 MTLALNAAWEYQLLTFPNPAVGAVCLSDNGTVVSVGTHKRAGGPHAEVYALRDAYTLLSG 69 Query: 70 ATAY---------------------------VTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 T VTLEPCSH G++P CA I + GI+RV + Sbjct: 70 DTTIAGCDDSHRIHDYLRTRHNGIFHTVSMAVTLEPCSHSGKTPSCALLIRDLGIKRVYI 129 Query: 103 CVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 V DP+ +G G LS G V +ME EG+ L ++ Q K + K A D Sbjct: 130 SVKDPNPAAAG-GASLLSDAGAECVFGIMEEEGEKLLEPFIRWQ--KSPFVFFKWAQRLD 186 Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 I I+ S+ +H LR + D I++G TV D P L RL Sbjct: 187 GTIDNG-----TISSQSSREHMHALRDRCDLIVIGGNTVRHDRPTLDARL 231 >gi|119179569|ref|XP_001241355.1| hypothetical protein CIMG_08518 [Coccidioides immitis RS] Length = 612 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E R H+TL A S D I +A ++G SK H LR++ DAIL Sbjct: 337 FLQPYLPTREENRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAIL 396 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTALL--- 242 +G+GT LAD+P L CRL + P +I+DP + ++ + +I+KTAL Sbjct: 397 IGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKG 456 Query: 243 -APVIIVTE----NDDPVLALAFRKKN---INIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 AP ++V+ + D +L L + I+ R + L G+ S++VE Sbjct: 457 KAPWVVVSPCANISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVE 516 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GG V +N VDS+I+ + +G GG+ Sbjct: 517 GGGVVLSELLNPEYEDFVDSVIVTVAPTYLGRGGV 551 >gi|58531995|emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa Japonica Group] Length = 633 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 118/234 (50%), Gaps = 16/234 (6%) Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V AL +A + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G+ Sbjct: 47 VFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGI 106 Query: 117 QWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVP 173 + L GI V ME E + AY+ + ++ TL+ +S + ++ G G+ Sbjct: 107 ERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQ 166 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 G+ S+ LL+ I+ GI + P T G ++ P+ II+ L+ Sbjct: 167 PGGYYSQ----LLKEYDGVIISGISVNMTTLP--TSHEAGAKQ--PLYIIIAQGGNSQLN 218 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + ++ + +++T D PV + + ++ D L+ +L IL RG+ Sbjct: 219 IQFLREECASEAVVLT--DSPV---TVKPPGVEVLVLDRMSLEFILEILAQRGL 267 >gi|55859444|emb|CAH17653.1| HTP reductase [Debaryomyces hansenii] Length = 262 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 106/218 (48%), Gaps = 37/218 (16%) Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 K FL YL R + +TL A S D+ I I+ +K H +R++ D I+ Sbjct: 26 KPFLEDYLPRPGSNKPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIM 85 Query: 195 VGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTAL-----LAPVII 247 VGIGTVLADDP+L CR H +P +ILDP K + +++ LAP I+ Sbjct: 86 VGIGTVLADDPKLNCRFEADDGHISTPRPVILDPTGKWVYNKSQLRSVCDDNKGLAPFIL 145 Query: 248 VTE-----NDD--------------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 + + N+D P+L+ + R N +I L KL + G+ Sbjct: 146 IDDTVTPSNEDIEVIEKQGGAFVKLPLLSSSNRIDNWKVI------LAKLFEL----GIK 195 Query: 289 SLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325 S+++EGGA++ + I + +VDS+I+ + +G+ G+ Sbjct: 196 SIMIEGGASIINDLLIYNEVVDSLIITIGPVFLGKDGV 233 >gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group] gi|113536367|dbj|BAF08750.1| Os02g0473000 [Oryza sativa Japonica Group] Length = 490 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/291 (26%), Positives = 133/291 (45%), Gaps = 18/291 (6%) Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES-EGKIFLHA 140 YG S + +++ GI RVVV + P + G+ +Q L +GI VD + E K+F A Sbjct: 4 YGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLHSKLFKEA 62 Query: 141 Y----------LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 L R + LK A++ D I + + ++G S+ +V LR +S Sbjct: 63 LKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRS 122 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DAI+VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 123 DAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQR 180 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 L K + ++ D + + +++ RG S+L E G +A S I++ ++ Sbjct: 181 GARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHK 240 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + + + +IG P+P+ G L N M D DV E I +++ + Sbjct: 241 VYAFLAPKIIGGVNAPTPV--GELGMNQMTQAIDLI--DVSYEQIDRDMLM 287 >gi|301055608|ref|YP_003793819.1| riboflavin biosynthesis protein contains C-terminal domain of RibD [Bacillus anthracis CI] gi|300377777|gb|ADK06681.1| riboflavin biosynthesis protein contains C-terminal domain of RibD [Bacillus cereus biovar anthracis str. CI] Length = 216 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/156 (34%), Positives = 84/156 (53%), Gaps = 3/156 (1%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 ITG ++ VH R DAILVG+ TV+AD+P LT R+ +H P+R+ILD H + Sbjct: 17 ITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNGGKH-PIRVILDTHLRTPPS 75 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLL 291 S +I L IIV + + ++ KNI I + +++ +L +L + + SL Sbjct: 76 SHVITDGLAPTWIIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLF 135 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 VEGG V SF+ ++ + I+ Y S +IG P+ Sbjct: 136 VEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPT 171 >gi|303320915|ref|XP_003070452.1| RibD C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110148|gb|EER28307.1| RibD C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320033048|gb|EFW14997.1| riboflavin-specific deaminase [Coccidioides posadasii str. Silveira] Length = 611 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E R H+TL A S D I +A ++G SK H LR++ DAIL Sbjct: 337 FLQPYLPTREENRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAIL 396 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTALL--- 242 +G+GT LAD+P L CRL + P +I+DP + ++ + +I+KTAL Sbjct: 397 IGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKG 456 Query: 243 -APVIIVTE----NDDPVLALAFRKKN---INIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 AP ++V+ + D +L L + I+ R + L G+ S++VE Sbjct: 457 KAPWVVVSPCANISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVE 516 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GG V +N VDS+I+ + +G GG+ Sbjct: 517 GGGVVLSELLNPEYEDFVDSVIVTVAPTYLGRGGV 551 >gi|298674087|ref|YP_003725837.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanohalobium evestigatum Z-7303] gi|298287075|gb|ADI73041.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanohalobium evestigatum Z-7303] Length = 234 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/190 (35%), Positives = 97/190 (51%), Gaps = 13/190 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R I L AVS D I V I+G +V L+ +SD ++VGIGTVLADDP LT Sbjct: 11 RPFIFLNAAVSADGKISTKERKQVKISGDNDFERVDELKKESDGVMVGIGTVLADDPSLT 70 Query: 209 CRL---------NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + NGL E+ P RI++D + + +D+ I K VI V++ P + Sbjct: 71 IKSENRKKYRKNNGLDEN-PARIVVDSNGRTPIDADIFKKGEGKRVIAVSKC-APEKKIK 128 Query: 260 FRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 K+ +II D DLK L+ L G+ L+VEGG+ + S ++ +LVD I + Sbjct: 129 TLKEKADIIVAGNDKVDLKILVEKLKDMGIEKLMVEGGSNLNWSLLSLKLVDEIHAFIGN 188 Query: 318 IVIGEGGIPS 327 I+IG PS Sbjct: 189 IIIGGSTAPS 198 >gi|164658880|ref|XP_001730565.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966] gi|159104461|gb|EDP43351.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966] Length = 245 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 68/207 (32%), Positives = 105/207 (50%), Gaps = 22/207 (10%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +TL A SQD I A + ++G S N H LRA DAILVGIGTVLADDP L RL Sbjct: 20 VTLTFAQSQDGKIAGANKRPLRLSGEKSMNMTHHLRAMHDAILVGIGTVLADDPRLNVRL 79 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAF--RKKNINII 268 + SP +ILD H ++ + ++++ A P+++ E D A+ R++ + Sbjct: 80 DNYSGLSPRPVILDCHLQMPCECRLLQRVPRADPLVLCAEPADQNARKAWETRRQALEHA 139 Query: 269 YCDCRDLK--------------KLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIIL 313 R ++ +L +L + S++VEGGAAV S + S L+ +I+ Sbjct: 140 GAHIRTVETFTNPQGKLHLAWPSILHVLAHEQLHSVMVEGGAAVIDSILASHHLLHKVIV 199 Query: 314 YRSQIVIGEGGI---PSPLEEG-YLEK 336 S + +GE G+ +PL+ YL+ Sbjct: 200 TVSPVRVGEDGVGYTATPLQHAPYLQH 226 >gi|239917588|ref|YP_002957146.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] gi|281413925|ref|ZP_06245667.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] gi|239838795|gb|ACS30592.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] Length = 377 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 78/259 (30%), Positives = 120/259 (46%), Gaps = 24/259 (9%) Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T +VTLEPC H G + PC+Q +++ I + V DP G G L+ G+ V Sbjct: 80 GLTLHVTLEPCDHTGSTGPCSQAVLDAEIGALRYAVADPTGH-DGGGAARLAAHGVHVTG 138 Query: 129 MMESEGKIFLHAYLTRQVEK--RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + L A R+V R +T +A S D A S ITG S+ H + Sbjct: 139 PTGETAALTLTARW-REVRDAGRPWVTGHLAQSLDGHAAAADGTSQWITGPDSRVHAHKV 197 Query: 187 RAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R++ DAI+VG GTVLADDP LT R + H P+ ++ + D ++T P Sbjct: 198 RSRVDAIVVGTGTVLADDPRLTARDAVGAELAHQPVPVVQG--HRPVPDGAALRT---HP 252 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V++ + DP LA + GR +L+EGG V +++ Sbjct: 253 VVLEVLDHDPHAVLAALAAHPGPWPH-------------GRRAEHVLIEGGPRVLGAWLR 299 Query: 305 SRLVDSIILYRSQIVIGEG 323 + LVD +++Y + +++G G Sbjct: 300 AGLVDELMVYTAPLLLGPG 318 >gi|291617164|ref|YP_003519906.1| RibD [Pantoea ananatis LMG 20103] gi|291152194|gb|ADD76778.1| RibD [Pantoea ananatis LMG 20103] Length = 162 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/149 (33%), Positives = 74/149 (49%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +SR + NP V C+IV+DG V+ +G T G HAE+ A+ + Sbjct: 1 MMLALEYSRQALPECRPNPPVGCVIVRDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISEC 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPCS GR+P CA I E + + + +DDP + G G L + GI + R Sbjct: 61 EIYVTLEPCSFQGRTPSCALTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGIALHRAS 120 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 ES + + ++ + H +I +S Sbjct: 121 ESRRSRNFFSPIWTRLRHKHHFYRRIGIS 149 >gi|160937911|ref|ZP_02085269.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC BAA-613] gi|158439137|gb|EDP16891.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC BAA-613] Length = 262 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 7/224 (3%) Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 VSG+G + L GI + + ++E E + H + R + +K A++ D Sbjct: 2 VSGKGTKILVANGIEVTEGILEEECRELNHVFFHYIKTGRPLVIMKYAMTLDGKTATFAG 61 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ITG ++ +VH R++ A++ G+ T+LADD LTCRL +P+RII D + Sbjct: 62 HSRWITGERARRRVHEDRSRYSAVMCGVETILADDSLLTCRLP--DTRNPVRIICDSQLR 119 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285 DS++ T A I+ T D L + +K I+ R DL L L Sbjct: 120 TPPDSQVAATCSQARTILATCCPDREAWLPYEEKGCEILLLPPREGRVDLNALTERLGQM 179 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 G+ S+L+EGG+ + S +N +V+ + Y S + G +P+ Sbjct: 180 GIDSVLLEGGSTLNWSALNQGIVNRVQAYISPGLFGGATAKTPV 223 >gi|150401090|ref|YP_001324856.1| hypothetical protein Maeo_0660 [Methanococcus aeolicus Nankai-3] gi|150013793|gb|ABR56244.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus aeolicus Nankai-3] Length = 247 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 95/163 (58%), Gaps = 11/163 (6%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSL 232 I+G +VH +R D I+VGIGTVL DDP LT ++N +E +P+RI++D + ++ L Sbjct: 51 ISGEDDLKRVHKIRKSVDGIMVGIGTVLKDDPRLTVHKINAKKEDNPIRIVVDSNLRIPL 110 Query: 233 DSKIIK---TALLAPVIIVTEN---DDPVLALAFRKKNINIIYC--DCRDLKKLLTILVG 284 +++++ T ++A + EN ++ + LA KKNI II D DL KL+ +L Sbjct: 111 NARVLNDDATTIIATTENMGENKNINEKIRELA--KKNIIIIKTGIDKVDLVKLMELLYK 168 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +G+ ++L+EGG + + LVD + +Y + + G G P+ Sbjct: 169 KGIKNILLEGGGTLNWGMFENNLVDEVRVYIAPKIFGGKGAPT 211 >gi|83775268|dbj|BAE65390.1| unnamed protein product [Aspergillus oryzae] Length = 286 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 65/219 (29%), Positives = 108/219 (49%), Gaps = 26/219 (11%) Query: 134 GKIFLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 G FL YL + E+R H+TL A S D+ I + ++G +K H LR++ D Sbjct: 13 GSNFLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHD 72 Query: 192 AILVGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP--HFKLSLDSKIIKTAL- 241 AIL+G+GTVLAD+P L CRL + P +I+DP + + + ++++TA+ Sbjct: 73 AILIGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVE 132 Query: 242 ---LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSL 290 AP ++V+ P + + + + Y L+ +L L GV S+ Sbjct: 133 GKGKAPWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSV 192 Query: 291 LVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326 ++EGG V +N + +DSII+ + +G GG+P Sbjct: 193 MIEGGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 231 >gi|255728685|ref|XP_002549268.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida tropicalis MYA-3404] gi|240133584|gb|EER33140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida tropicalis MYA-3404] Length = 247 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 106/206 (51%), Gaps = 20/206 (9%) Query: 137 FLHAYL--TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL+ YL T R +TL A S D+ I ++ +K H LR++ D+I Sbjct: 13 FLNPYLPNTETTTNRPFVTLTYAQSLDSKIAAQPGQQTKLSHLETKTMTHYLRSKHDSIF 72 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMR-IILDP----HFKLSLDSKIIKTAL-LAPVIIV 248 +GIGTVLADDP+L CR + E S +R IILDP ++ S KI L LAP II+ Sbjct: 73 IGIGTVLADDPKLNCRYD---EKSTIRPIILDPKAQWQYEKSTLCKICHDGLGLAPFIII 129 Query: 249 TENDDP-------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 EN +P V + + ++ + K +L L + S+++EGGA V + Sbjct: 130 DENMNPSDDSRKIVENQGGKYVKLPLLEKRNENWKLILEKLKELDIKSVMIEGGAKVIND 189 Query: 302 FINSR--LVDSIILYRSQIVIGEGGI 325 + +R LVDS+I+ + + +G+ G+ Sbjct: 190 LLINRDNLVDSLIITVAPVFLGKNGV 215 >gi|296109936|ref|YP_003616885.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus infernus ME] gi|295434750|gb|ADG13921.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus infernus ME] Length = 214 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 84/154 (54%), Gaps = 4/154 (2%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LRA+ DAI+VGIGTVL DDP LT E +P+RI++D ++ L+++++ Sbjct: 34 RVHKLRAKVDAIMVGIGTVLKDDPRLTVH-KIKSEKNPIRIVVDSSLRIPLNARVLNKE- 91 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I TE + A + +I C DLKKL+ IL +G+ S+L+EGG + Sbjct: 92 AKTIIATTEKANKEKIKALENLGVEVIVCGKERVDLKKLMEILYEKGIRSILLEGGGTLN 151 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 S LVD + +Y + ++ G + EG+ Sbjct: 152 WSMFKEGLVDEVSVYIAPMIFGGKSVSYVDGEGF 185 >gi|154150347|ref|YP_001403965.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Methanoregula boonei 6A8] gi|153998899|gb|ABS55322.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanoregula boonei 6A8] Length = 226 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/194 (34%), Positives = 93/194 (47%), Gaps = 11/194 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + +A+S D + V I+G +V L+A DA+ VGIGTVLADDP LT Sbjct: 2 RPRVIVNVAMSADGKLSTRERRQVKISGNEDFARVDRLKAGCDAVAVGIGTVLADDPSLT 61 Query: 209 CR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + G EH P+R+++D + D+ I+ VI V+E DP A Sbjct: 62 VKSPDLRAERQREGRPEH-PVRVVIDGRARTPPDASILVKGDGLRVIAVSERADPAKVEA 120 Query: 260 FRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 R K I D DL ++L L G+ SL+VEGG + FI + L D I Y I Sbjct: 121 LRAKAAVITAGKDEVDLSRVLDELGQMGIRSLMVEGGGTLIAGFIRAGLADEIYTYIGSI 180 Query: 319 VIGEGGIPSPLEEG 332 VIG P+ + G Sbjct: 181 VIGGKDAPTLADGG 194 >gi|225555092|gb|EEH03385.1| riboflavin-specific deaminase [Ajellomyces capsulatus G186AR] Length = 684 Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R E R +TL A S D+ + + ++G +K H LR++ DAIL Sbjct: 379 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGTETKLMTHYLRSRHDAIL 438 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT + D+P L CRL + P II+DP + D +++KTA Sbjct: 439 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 498 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ N P LA + + + Y L+ +L L G+TS+++E Sbjct: 499 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 558 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G+GG+ Sbjct: 559 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 593 >gi|282163718|ref|YP_003356103.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine reductase [Methanocella paludicola SANAE] gi|282156032|dbj|BAI61120.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine reductase [Methanocella paludicola SANAE] Length = 230 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 107/201 (53%), Gaps = 12/201 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP L Sbjct: 2 ERPFTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRASSDAVMVGIGTVLADDPSL 61 Query: 208 TCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLA 257 T + ++ +E +P RI++D ++ L + + K + +++V+++ D V A Sbjct: 62 TVKSEERRRRRVSEGKEENPARIVVDSKARIPLTADVFKKGVGKRIVVVSKSAPSDKVEA 121 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 L K ++ + + DL + L RG+ L+VEGGA + + + LVD I ++ Sbjct: 122 LKA-KADVIVAGGEEVDLPVMSGELKKRGIDRLMVEGGATLNWAMTRAGLVDEISVFVGN 180 Query: 318 IVIGEGGIPSPLE-EGYLEKN 337 ++IG P+ ++ EG E++ Sbjct: 181 LIIGGKTAPTFMDGEGISERS 201 >gi|325092207|gb|EGC45517.1| riboflavin-specific deaminase [Ajellomyces capsulatus H88] Length = 684 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R E R +TL A S D+ + + ++G +K H LR++ DAIL Sbjct: 379 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 438 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT + D+P L CRL + P II+DP + D +++KTA Sbjct: 439 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 498 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ N P LA + + + Y L+ +L L G+TS+++E Sbjct: 499 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 558 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G+GG+ Sbjct: 559 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 593 >gi|241203520|ref|YP_002974616.1| bifunctional deaminase-reductase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857410|gb|ACS55077.1| bifunctional deaminase-reductase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 222 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 53/157 (33%), Positives = 82/157 (52%), Gaps = 4/157 (2%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA DAI+VG GTVL+DDPELT R +P+RI+ +L LD+K++ Sbjct: 40 HGQRAAHDAIMVGAGTVLSDDPELTVR--HAPGPNPLRIVPSSMGRLPLDAKLLNDGHPT 97 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 V++ + + K N+ ++ C R DL L+ IL RG+ S++VEGG+ + HS Sbjct: 98 VVVVSRSAKEADIEALKSKPNVEVVRCGERRVDLPGLMNILDARGIKSMIVEGGSRLLHS 157 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338 +RLV I++ ++ G PS + + F Sbjct: 158 LHEARLVHRIVIKHIPVITGSADAPSYMRPDEYSRPF 194 >gi|152993547|ref|YP_001359268.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1] gi|151425408|dbj|BAF72911.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1] Length = 330 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 99/234 (42%), Gaps = 38/234 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + + LT NP+V ++ DG ++ G HAEV AL +A E Sbjct: 3 DEFYMQLALDKAWEYQLLTYPNPAVGAVVTLDGTILAVEAHKKAGTSHAEVLALLKAYET 62 Query: 67 ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99 +T YVTLEPCSH GR+P CA + +++ Sbjct: 63 LSQSTVDFDRMDAQKAHNFLHTIPKDFFSECSIYVTLEPCSHEGRTPACATLLEALNLKK 122 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V++ DP + G G+ L ++E + + +L Q +R+ + K+A + Sbjct: 123 VIIGTKDP-IEGHGGGMDRLKNN---TSGVLEEACQALIEPFLIWQ--ERAFVLFKLAQT 176 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 + IG S S VH LR + D +L+G TV D P L CR G Sbjct: 177 TNGRIGGGYLSSKS-----SLKHVHQLREKCDRLLIGGNTVRTDRPTLDCRFTG 225 >gi|255935949|ref|XP_002559001.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583621|emb|CAP91636.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255] Length = 607 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FLH YL Q E+R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 349 FLHPYLPSQSERREFPHVTLSYASSMDSKISLQPGMQTVLSGPEAKLMTHYLRSRHDAIL 408 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 VG+GTVLAD+P L CRL G P +I+DP + + + ++++TA+ Sbjct: 409 VGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPMGRWPVHPECRMLRTAVEGKG 468 Query: 242 LAPVIIVTEND--DP---VLALAFRKKNINII-YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++++ +P V+ + + I+ Y L+ + L G+ S+++E Sbjct: 469 KAPWVVLSPGAQINPQTLVMLKGYGGDFLRIVEYNQHWRLRWEAVFRALASEGIKSVMIE 528 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DSII+ + +G GG+ Sbjct: 529 GGGTVLSELLNPEYTSFIDSIIVTVAPTYLGRGGV 563 >gi|83815284|ref|YP_445633.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber DSM 13855] gi|83756678|gb|ABC44791.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber DSM 13855] Length = 455 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 71/253 (28%), Positives = 114/253 (45%), Gaps = 31/253 (12%) Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 G L+ L Q+ +DR +G+ F +TL A S D I + Sbjct: 212 GTSLRDLKQR---IDRYFAEKGRPF--------------VTLTYAQSLDGSIASTSGTPL 254 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 PI+ + H LRA D ILVGIGTVLADDP LT R N P+ I+LD + Sbjct: 255 PISSEQALRFTHQLRALHDGILVGIGTVLADDPRLTVRHN--DGTHPVPIVLDSSLRFPS 312 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287 D++++ P+I+ + N DP +I C +K LL L R Sbjct: 313 DAQLLAGDGPDPLIVTSPNADPDRKERLEAHGGTVIELSCGPEGGICVKTLLRTLGERDF 372 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFM---C 340 +S++VEGG ++ SF+ + +I+ + + +G S L ++ + +F Sbjct: 373 SSVMVEGGTSILTSFLRRQCAQRVIVTVAPMFVGGTAALSSLAPEDQDTHARSDFPRLDN 432 Query: 341 VRRDYFGSDVCLE 353 +++ ++G D+ LE Sbjct: 433 IQQRWYGEDLVLE 445 >gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 429 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 95/378 (25%), Positives = 152/378 (40%), Gaps = 33/378 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V+ DA M+ +R G+ + +P AC + + DG V+ A G AE+ + Sbjct: 51 VTPRDAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACAD 110 Query: 62 EAGEEARGAT--------AYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 E RGAT YV LEP + + G R VV + P + Sbjct: 111 EM--RRRGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLR 168 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFL----------HAYLTRQVEKRSHITLKIAVSQDN 162 GR ++ L ++GI V + A L R K A++ D Sbjct: 169 GRAVRALRERGIEVCVLEGEAEGFEGEAARACRETNEALLYRVATGLPFSVYKYAMTLDG 228 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMR 221 I S +TG ++ V R ++DA++VG GTV D+P LTCR G Q P R Sbjct: 229 KIATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCREETGFQ---PAR 285 Query: 222 IILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 ++L L D+K+ +AP I+ T+ P A R K + ++ D Sbjct: 286 VVLTRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELTPLAAAQ 345 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-PSPLEEGYLEK--- 336 + RG E G +A + S + ++ + + ++G G + P+PL +E Sbjct: 346 YMFKRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLGIEAMHD 405 Query: 337 --NFMCVRRDYFGSDVCL 352 VR + +G D+ + Sbjct: 406 ALPLSGVRLEIYGRDILI 423 >gi|145607321|ref|XP_361694.2| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15] gi|145014902|gb|EDJ99470.1| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15] Length = 289 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/199 (32%), Positives = 101/199 (50%), Gaps = 23/199 (11%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TL A S D+ + +A ++G SK H LR++ DAIL+G GT +ADDP L Sbjct: 52 RPFVTLTFATSLDSALSLAPGVRTTLSGPQSKAMTHFLRSRHDAILIGAGTAVADDPGLN 111 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLD--SKIIKTA----LLAPVIIVTEN-----DDPVLA 257 CR+ E P I++DP + S SK+++ A LAP +I T D+ A Sbjct: 112 CRIQD-AESQPRPIVVDPRCRWSFHERSKVLQLAGEGRGLAPFVITTPEAAAAIDEQKRA 170 Query: 258 L--AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---- 306 L + K I++ Y D +L L G+ S++VEGG V ++ + + Sbjct: 171 LLESHGGKYISLKYGGSSDDGVLDWNDILAALQHEGLNSVMVEGGGHVINTLLGHKDKND 230 Query: 307 LVDSIILYRSQIVIGEGGI 325 LVDS+I+ + +G+GG+ Sbjct: 231 LVDSVIITIAPTWLGQGGV 249 >gi|307353941|ref|YP_003894992.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Methanoplanus petrolearius DSM 11571] gi|307157174|gb|ADN36554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Methanoplanus petrolearius DSM 11571] Length = 226 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 102/197 (51%), Gaps = 10/197 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 ++T+ +A+S D + V I+G +V +L+A++DAI+VGIGTVLADDP LT Sbjct: 4 YVTVNLAMSADGKLSTIERKQVKISGQDDFRRVDILKAENDAIMVGIGTVLADDPSLTVK 63 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 RL+ ++ +P+RII+D + ++I+ +I V+++ DP K Sbjct: 64 SPELKEKRLSSGRDENPVRIIVDSKARTPCSAEILHKGPGRRIIAVSKSADPKKIDELGK 123 Query: 263 KNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + D R DL+ L + G+ +L+VEGG ++ S LVD ++IG Sbjct: 124 YAEIVQAGDERVDLRIFLAKIAEMGIETLMVEGGGSLIWSLFEDDLVDEYYTCIGNVIIG 183 Query: 322 EGGIPSPLE-EGYLEKN 337 P+P + G++ +N Sbjct: 184 GASAPTPADGTGFIREN 200 >gi|118576931|ref|YP_876674.1| riboflavin specific deaminase [Cenarchaeum symbiosum A] gi|118195452|gb|ABK78370.1| riboflavin specific deaminase [Cenarchaeum symbiosum A] Length = 217 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 74/215 (34%), Positives = 105/215 (48%), Gaps = 18/215 (8%) Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 L A S D I G I+ +VH LR++ D I+VG GTV++DDP LT R G Sbjct: 3 LGAAASVDGRIATR-TGDSGISSARDLRRVHRLRSEVDGIMVGRGTVVSDDPLLTARHRG 61 Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKNINIIYC-- 270 +P+RII+DP +L +S+I +TA P I+ T P ++ ++ Sbjct: 62 --GRNPVRIIIDPLGRLPPESQIARTAGRIPTIVACTGRIPPRNRRRLEGLSVEVLEAGT 119 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 D DL LL L RG+ ++L+EGGA FI LVD +I+ + +VIG G PL Sbjct: 120 DEMDLLVLLRALYRRGLRTILLEGGARTNWGFIERGLVDEMIITIAPVVIGGTG-SVPLV 178 Query: 331 EGYLEKNFMCVRRDYF--------GSDVCLEYIGK 357 G + F V R F G +V L Y+ + Sbjct: 179 GG---RGFAGVHRRAFRLKEALRQGDEVVLHYVKR 210 >gi|218194431|gb|EEC76858.1| hypothetical protein OsI_15040 [Oryza sativa Indica Group] Length = 288 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 62/168 (36%), Positives = 91/168 (54%), Gaps = 17/168 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +AG+ Sbjct: 56 DGVYIRRCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAGDL 115 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC---------------VDDPDVRV 111 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V Sbjct: 116 AENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVMWGLTYERRPRSIVDGMTDPNPIV 175 Query: 112 SGRGLQWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIA 157 + +G++ L GI V ME E + AY+ R + ++ TL+ A Sbjct: 176 ASKGIERLQSAGIDVRVCMEEEALCRKLNEAYIHRMLAGKAFATLREA 223 >gi|240281297|gb|EER44800.1| riboflavin-specific deaminase [Ajellomyces capsulatus H143] Length = 611 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 104/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R E R +TL A S D+ + + ++G +K H LR++ DAIL Sbjct: 306 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 365 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT + D+P L CRL + P II+DP + D +++KTA Sbjct: 366 IGVGTAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPIGRWPADPECRLLKTAKEGKG 425 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ N P LA + + + Y L+ +L L G+TS+++E Sbjct: 426 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 485 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G+GG+ Sbjct: 486 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 520 >gi|317157692|ref|XP_001826523.2| riboflavin-specific deaminase [Aspergillus oryzae RIB40] Length = 637 Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 65/216 (30%), Positives = 107/216 (49%), Gaps = 26/216 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E+R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 367 FLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 426 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +I+DP + + + ++++TA+ Sbjct: 427 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKG 486 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ P + + + + Y L+ +L L GV S+++E Sbjct: 487 KAPWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIE 546 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326 GG V +N + +DSII+ + +G GG+P Sbjct: 547 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 582 >gi|15678263|ref|NP_275378.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanothermobacter thermautotrophicus str. Delta H] gi|6225947|sp|O26337|RIB7_METTH RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2621283|gb|AAB84741.1| riboflavin-specific deaminase [Methanothermobacter thermautotrophicus str. Delta H] Length = 216 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 23/223 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A++ D I A GS I+G +VH LR + DAI+VGI TVLADDP LT Sbjct: 2 RPYVILNAAMTLDGKIATA-TGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60 Query: 209 C-RLNGLQEHSPMRIILD------PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R++ +P+R+++D PHF++ D AP +I P +A Sbjct: 61 VHRVDAAPGDNPVRVVVDSMARTPPHFRVLNDE--------APTVIGVSESAPPERVAEL 112 Query: 262 KKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +K ++ R DL LL L G G+ L++EGG+ + +S + LVD + + + ++ Sbjct: 113 RKRAEVVVAGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMI 172 Query: 320 IGEGGIPSPLEEGYLEKNFMCVR----RDY-FGSDVCLEYIGK 357 +G + ++ +++ +R R Y G D+ +EY K Sbjct: 173 VGGRDARTLVDGEGIDEMADAIRLELKRSYTLGEDLIVEYTVK 215 >gi|260907065|ref|ZP_05915387.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Brevibacterium linens BL2] Length = 473 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 16/231 (6%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L AY T + + ++A S+D I + + ++G I + +H +RA A+LVG Sbjct: 233 LAAYDT--ISDGDEVVAQLAQSEDGFIATSDGDAQFVSGQIDRAHLHRIRASVGAVLVGC 290 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 GTV+ADDP LT R + +P+R++LDPH ++ + ++ + + ++ P Sbjct: 291 GTVIADDPRLTVR--AVPGENPVRVVLDPHGRVPTTATVLTSPESPTLWLIGAEVAPSSD 348 Query: 258 LAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + + + + D+ ++++++ S+LVEGG SF+ + ++D + L Sbjct: 349 VGDHVSVVRLPAAEGDDIPPARIVSLIREYVAGSILVEGGGRTVSSFLAAGVLDRLFLTS 408 Query: 316 SQIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 + + IG G+P +P+ L + F RR FG D+C EY+ L Sbjct: 409 APVFIGN-GVPGIRFEGTPVMAEALRRPF---RRYQFGEDMCTEYLLSELA 455 >gi|70982261|ref|XP_746659.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293] gi|66844282|gb|EAL84621.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293] gi|159122105|gb|EDP47227.1| riboflavin-specific deaminase [Aspergillus fumigatus A1163] Length = 622 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL +YL R EKR H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 363 FLDSYLPRPGEKRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 422 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +++DP + + + ++++TA+ Sbjct: 423 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 482 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP +IV+ P + + + + Y L+ +L L G+ S+++E Sbjct: 483 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 542 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DSII+ + +G GG+ Sbjct: 543 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGRGGV 577 >gi|329766024|ref|ZP_08257585.1| deaminase-reductase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137479|gb|EGG41754.1| deaminase-reductase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 218 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 93/178 (52%), Gaps = 6/178 (3%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + R H+ L A+S D I + G ++ I K ++H LR++ DAILVG TV DDP Sbjct: 3 KSRPHVILSAAISIDGKIA-SRSGDSKLSSQIDKVRLHKLRSKVDAILVGKNTVQRDDPL 61 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNI 265 LT R + +P+RIILD + ++SKI++T P II L K + Sbjct: 62 LTVRYT--KGKNPIRIILDSQGTIPINSKILQTCDKVPTIIAVSRKISNENLKKLNKFPV 119 Query: 266 NIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 II + ++K L+T L R + ++LVEGG V FI +++ D I + S +IG Sbjct: 120 EIIMSGENLVNIKSLMTSLSKRKIKTILVEGGGTVNWQFIQNKMFDEIFITISPFIIG 177 >gi|240145210|ref|ZP_04743811.1| riboflavin biosynthesis protein RibD domain protein [Roseburia intestinalis L1-82] gi|257202673|gb|EEV00958.1| riboflavin biosynthesis protein RibD domain protein [Roseburia intestinalis L1-82] Length = 222 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 54/155 (34%), Positives = 85/155 (54%), Gaps = 6/155 (3%) Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ QVH +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+I++ Sbjct: 35 AREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQ 92 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINII---YCDCR-DLKKLLTILVGRGVTSLLVEG 294 TA II T D ++K II + D + DLK+L+ L G+ S+L+EG Sbjct: 93 TAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEG 152 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 GA + S + + +V+ + Y + + G SP+ Sbjct: 153 GAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPV 187 >gi|88603813|ref|YP_503991.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] gi|88189275|gb|ABD42272.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanospirillum hungatei JF-1] Length = 225 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/215 (31%), Positives = 107/215 (49%), Gaps = 29/215 (13%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + +AVS D + V I+G ++V ++A DAI+VGIGTVLADDP LT Sbjct: 2 RPYVIVNVAVSADGKLSTRERRQVKISGKEDFDRVDEIKAGCDAIMVGIGTVLADDPSLT 61 Query: 209 CR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + NG EH P+RI++D + D+KI+ +I V+ LA Sbjct: 62 IKSADRIAERVRNGKPEH-PVRIVVDSQARTPPDAKILHKGPGLRIIAVS--------LA 112 Query: 260 FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 ++NI+ + DL LLT L +G+ L+VEGG + +++ LVD Sbjct: 113 APEENISALKNHAEIIQAGEVTVDLPVLLTKLAEKGIKRLMVEGGGTLIWGMLSAGLVDE 172 Query: 311 IILYRSQIVIGEGGIPSPLE-EGY-LEKNFMCVRR 343 + ++ I+IG P+ + GY LE +F + R Sbjct: 173 LTMFVGNIIIGGKDAPTLADGTGYVLESDFPVLER 207 >gi|294507525|ref|YP_003571583.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber M8] gi|294343853|emb|CBH24631.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber M8] Length = 459 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 31/253 (12%) Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 G L+ L Q+ +DR +G+ F +TL A S D I + Sbjct: 216 GTSLRDLKQR---IDRYFAEKGQPF--------------VTLTYAQSLDGSIASKSGTPL 258 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 PI+ + H LRA D ILVGIGTVLADDP LT R N P+ I+LD + Sbjct: 259 PISSEQALRFTHQLRALHDGILVGIGTVLADDPRLTVRHN--DGTHPVPIVLDSSLRFPS 316 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGV 287 D++++ P+I+ + N DP +I C ++ LL L R Sbjct: 317 DAQLLAGDGPDPLIVTSPNADPDRKERLEAHGGTVIELSCGPEGGICVRTLLRTLGERDF 376 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFM---C 340 +S++VEGG ++ SF+ + +I+ + + +G S L ++ + +F Sbjct: 377 SSVMVEGGTSILTSFLRRQCAQRVIVTVAPMFVGGTAALSSLAPEEQDTHARSDFPRLDN 436 Query: 341 VRRDYFGSDVCLE 353 +++ ++G D+ LE Sbjct: 437 IQQRWYGEDLVLE 449 >gi|317034868|ref|XP_001400638.2| riboflavin-specific deaminase [Aspergillus niger CBS 513.88] Length = 654 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + ++R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 387 FLEPYLPKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 446 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +++DP + + D ++++TA+ Sbjct: 447 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKG 506 Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ DP + + + + Y L+ +L L G+ S+++E Sbjct: 507 KAPWVVVSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIE 566 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DSII+ + +G GG+ Sbjct: 567 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGV 601 >gi|134081305|emb|CAK41808.1| unnamed protein product [Aspergillus niger] Length = 651 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + ++R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 384 FLEPYLPKHNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 443 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +++DP + + D ++++TA+ Sbjct: 444 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKG 503 Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ DP + + + + Y L+ +L L G+ S+++E Sbjct: 504 KAPWVVVSPGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIE 563 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DSII+ + +G GG+ Sbjct: 564 GGGTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGV 598 >gi|119486680|ref|XP_001262326.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181] gi|119410483|gb|EAW20429.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181] Length = 627 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 108/215 (50%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL +YL R EKR H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 368 FLDSYLPRLDEKRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 427 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +++DP + + + ++++TA+ Sbjct: 428 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 487 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP +IV+ P + + + + Y L+ +L L G+ S+++E Sbjct: 488 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 547 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N ++ +DSII+ + +G GG+ Sbjct: 548 GGGTVLSELLNPEYTQFIDSIIVTVAPTYLGRGGV 582 >gi|154273018|ref|XP_001537361.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150415873|gb|EDN11217.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 531 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 65/215 (30%), Positives = 103/215 (47%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R E R +TL A S D+ + + ++G +K H LR++ DAIL Sbjct: 226 FLQPYLPRYEENRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAIL 285 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+G + D+P L CRL + P II+DP + D +++KTA Sbjct: 286 IGVGAAMVDNPGLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKG 345 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ N P LA + + + Y L+ +L L G+TS+++E Sbjct: 346 KAPWVVVSPGANIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIE 405 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G+GG+ Sbjct: 406 GGATVISELLNPEYVDFVDSLIITVAPTFLGQGGV 440 >gi|219113687|ref|XP_002186427.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583277|gb|ACI65897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 386 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 49/174 (28%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQAL 60 +S+ D F+ A+ ++ +G T NP+V C++V +DG V+G+G G PHAEV AL Sbjct: 45 LSTEDEGFLRQAIECAKEGLGHTFPNPAVGCVLVNQEDGTVLGKGFHPRAGYPHAEVFAL 104 Query: 61 EEAG----------------EEARGA-------------------------------TAY 73 +A + +GA TAY Sbjct: 105 LQAAGHLEDGVAAGQAVVKKQNEQGAILNEVLRLSQQYTTDDGPEQLFEDTLAKSNVTAY 164 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 VTLEPCSHYG++PPCA + RVVV DP+ +V G G++ L + G+ VD Sbjct: 165 VTLEPCSHYGKTPPCAVTLALAQASRVVVGFRDPNPKVDGGGVKLLREVGVAVD 218 >gi|50550031|ref|XP_502488.1| YALI0D06501p [Yarrowia lipolytica] gi|49648356|emb|CAG80676.1| YALI0D06501p [Yarrowia lipolytica] Length = 250 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 102/228 (44%), Gaps = 20/228 (8%) Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 K L YL + E +H+TL A S D+ I I+ +K H LRA D IL Sbjct: 15 KQTLTPYLPPKGE--NHVTLTYAQSLDSRIAAKRDERTTISSEETKRMTHWLRAHHDGIL 72 Query: 195 VGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKII-----KTALLAP 244 VG+ T + D+P L C+ LQE SP IILDP F+ + + AP Sbjct: 73 VGVQTAIIDNPGLHCKSFTDEDYKLQEQSPQPIILDPQFRWEFKATKLACNAAHNGYKAP 132 Query: 245 VIIVTENDDPVLALAFRKKNI-----NIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 +++ + A F+KK I ++ D K + L G+ S++VEGGA V Sbjct: 133 IVVTKSGYEIDTAKKFKKKGIEDFGGKVLMLDDFSWKSIFDALHNDCGLKSIMVEGGAHV 192 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEK-NFMCVRRD 344 S + DS+++ + +G G+ SP E L+K + RD Sbjct: 193 IESMLEVGAFDSLVVTVGPVFLGRAGLEVSPKESVILDKVKWAAAERD 240 >gi|16125138|ref|NP_419702.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15] gi|221233866|ref|YP_002516302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Caulobacter crescentus NA1000] gi|13422148|gb|AAK22870.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15] gi|220963038|gb|ACL94394.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Caulobacter crescentus NA1000] Length = 331 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/160 (35%), Positives = 80/160 (50%), Gaps = 13/160 (8%) Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E G AR T VTLEPC+H+GR+PPC + I+ R V + V DP++ V+G G L Sbjct: 71 ERGAAARIDTLLVTLEPCNHHGRTPPCVEAILASPARTVWIAVRDPNLAVAGGGAARLEA 130 Query: 122 KGIIVDRMME----------SEGKIFLHAYLTRQVEKRSHITLKIAVS-QDNMIGMAGCG 170 G+ V + + + + + E R +T+K A++ Q +MI G Sbjct: 131 AGLEVRFLSDLAHPEASDLVRRARRLIAPFALWAREGRPWLTIKQAINRQGDMIPPPGAS 190 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + T S H LR ++DAI+ G GTVLAD P T R Sbjct: 191 T--FTSETSLTLAHDLRRRADAIITGSGTVLADAPAFTVR 228 >gi|261884015|ref|ZP_06008054.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 213 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 56/178 (31%), Positives = 96/178 (53%), Gaps = 13/178 (7%) Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQ 215 A + D I S IT ++ VH+LR + AI+VG+ TV+AD+PELT R+ NG Sbjct: 1 ASTLDGKIATYTGDSKWITSPEARYDVHVLRNEHMAIMVGVNTVVADNPELTTRIPNG-- 58 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI------IY 269 +P+RII+D ++ +DSK++ L +I + N D K + + ++ Sbjct: 59 -RNPIRIIMDSTLRIPIDSKVVTDGLAETLIFTSVNYDVEKRKVLESKGVKVFPTTGTVH 117 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 D D+ +LL + ++S+L+EGG ++ +F+ +RLVD + Y + +IG P+ Sbjct: 118 TDPHDVARLLG---EQNISSVLIEGGGSIHSAFLENRLVDKGVHYFAPKLIGGQFAPT 172 >gi|254578456|ref|XP_002495214.1| ZYRO0B06028p [Zygosaccharomyces rouxii] gi|238938104|emb|CAR26281.1| ZYRO0B06028p [Zygosaccharomyces rouxii] Length = 231 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 13/197 (6%) Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 +FL YL + + ITL A S D+ I I+ +K H LR D ILV Sbjct: 12 VFLRPYLPPDNDSKPFITLTYAQSLDSRISKGHGIRTTISHPETKTMTHYLRYHHDGILV 71 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL-----LAPVIIVTE 250 G GT LADDP L C+ N + SP IIL+ K + ++ P+I+V+E Sbjct: 72 GTGTALADDPGLNCKYNDAMDQSPRPIILNHSGKWKFNGSKLQELYEKGHGKKPIIVVSE 131 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI-NSRLV 308 PV +++ + C R L L G+ S++VEGGA V + + +S LV Sbjct: 132 L--PV----DEDSSVDYLVCQSRQWSILFDKLHKEYGLKSIMVEGGANVINQLLMSSNLV 185 Query: 309 DSIILYRSQIVIGEGGI 325 +S+I+ + +GE G+ Sbjct: 186 NSLIITVGPVYLGEKGV 202 >gi|67541631|ref|XP_664583.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4] gi|40742435|gb|EAA61625.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4] gi|259483715|tpe|CBF79332.1| TPA: riboflavin-specific deaminase (AFU_orthologue; AFUA_4G04730) [Aspergillus nidulans FGSC A4] Length = 609 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E+R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 347 FLEPYLPKSDERRELPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 406 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLS--LDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +I+DP + S DS++++TA+ Sbjct: 407 IGVGTVLADNPGLNCRLQGAGGFGGLGRMWQPRPVIIDPTGRWSPGADSRLLRTAVEGKG 466 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII-----YCDCR-DLKKLLTILVGRGVTSLLVE 293 AP ++V+ P L + + + + R + + L G+ S+++E Sbjct: 467 RAPWVVVSPGAQIHPSKLLMLKGYGGEFLRIMEYHQNWRLRWESIFRALASEGIKSVMIE 526 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DS+++ + +G GG+ Sbjct: 527 GGGRVLSELLNPEYAEFIDSLVVTLAPTYLGSGGV 561 >gi|258577771|ref|XP_002543067.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903333|gb|EEP77734.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 612 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 105/215 (48%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E R H+TL A S D I +A ++G SK H LR++ DAIL Sbjct: 338 FLEPYLPNRGENRKFPHVTLTYAQSMDGKISLAPGVQTALSGPESKLMTHYLRSRHDAIL 397 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTALL--- 242 VG+GT LAD+P L CRL + P +I+DP + + + +++++AL Sbjct: 398 VGVGTALADNPGLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWTFNPECRMLQSALAGKG 457 Query: 243 -APVIIVTENDD-PVLALAFRKKN----INIIYCDCRDLKKLLTI---LVGRGVTSLLVE 293 P I+V+ + P + KK+ + I + + TI L G++S++VE Sbjct: 458 KGPWIVVSPGANIPADRILLLKKHGGDFLRIAEFNPAWRLRWSTIFGALAAEGISSVMVE 517 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GG V +N +DS+I+ + +G GG+ Sbjct: 518 GGGVVLSELLNPEYEDFIDSVIVTVAPTYLGRGGV 552 >gi|20092885|ref|NP_618960.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina acetivorans C2A] gi|19918192|gb|AAM07440.1| riboflavin-specific deaminase [Methanosarcina acetivorans C2A] Length = 227 Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 11/189 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R I + A+S D + V I+G + ++ LRAQ+DAI+VGIGTVLADDP LT Sbjct: 3 RPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAQADAIMVGIGTVLADDPSLT 62 Query: 209 --------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R + +P+RII+D + LD+ I K +I V+ N P + Sbjct: 63 VKSPERKAARKAAGKSENPVRIIIDSAARTPLDADIFKKGEGLRIIAVS-NSAPAEKIKS 121 Query: 261 RKKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ +I D + +L +L +L G+ +L+VEGGA + +++ LVD + + + Sbjct: 122 LEEKARVIKTGDFKVNLPELAVLLKEMGINTLMVEGGATLNWGMLSAGLVDEVYTFVGNL 181 Query: 319 VIGEGGIPS 327 +IG P+ Sbjct: 182 IIGGKTAPT 190 >gi|322706817|gb|EFY98397.1| riboflavin biosynthesis protein Rib7 [Metarhizium anisopliae ARSEF 23] Length = 546 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 103/202 (50%), Gaps = 22/202 (10%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 Q R +TL A S D+ + +A ++G SK H LR++ AILVG+ TVLAD+ Sbjct: 305 QTSNRPFVTLTFATSLDSSLSLAPGVRTHLSGPGSKAMTHYLRSRHAAILVGVSTVLADN 364 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDS-----KIIKT-ALLAPVII--VTENDDPVL 256 P L+CR+ G P II+DPH + + S +I ++ A LAP I+ + E P Sbjct: 365 PGLSCRIEG-SASQPRPIIIDPHLRWTPRSSDQVFQICRSGAGLAPFILTGLLEAQIPRE 423 Query: 257 ALAFRK----KNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303 ++ + K I I + + L+ G+TS++VEGG + +S + Sbjct: 424 SVELLQQHGGKYIRIAPATSSKDRVRFEWNDVFQTLLSEGLTSVMVEGGGQIINSLLSPT 483 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 N L+DS+I+ + +G+GG+ Sbjct: 484 NHNLIDSVIVTIAPTWLGKGGV 505 >gi|225350924|ref|ZP_03741947.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158380|gb|EEG71622.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 191 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/150 (35%), Positives = 79/150 (52%), Gaps = 9/150 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65 ++M+ AL + G + NP V ++V+DG ++ G PHAE A + E G Sbjct: 41 KYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHGA 100 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ Sbjct: 101 DMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEENGVE 160 Query: 125 IVDRMMESE----GKIFLHAYLTRQVEKRS 150 +V +M +E + F H Y+T + R+ Sbjct: 161 VVYDVMRAECDAINRHFFH-YITTGMGVRT 189 >gi|224438172|ref|ZP_03659107.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] gi|313144617|ref|ZP_07806810.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] gi|313129648|gb|EFR47265.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] Length = 330 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 38/213 (17%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG------------EEA------- 67 NPSV +I + +G ++ RGV + G PHAEV A+++A E + Sbjct: 26 NPSVGAIITRENGEILSRGVHSLAGSPHAEVIAIKQAYFTLTQDSKILNLESSLELHNFL 85 Query: 68 --------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YV+LEPC+HYG++PPCA I E G +VV+ D SG G+Q L Sbjct: 86 LHNHNGIFKNHSLYVSLEPCNHYGKTPPCANLIKELGFAKVVIGTKDSHSLASG-GMQTL 144 Query: 120 SQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + GI + ++ K+ L + R EK + KIA+ D + G S + Sbjct: 145 QEAGIHTSLSQIQNEAQKLLLPFEILR--EKGRFVLFKIAMRLDGSY-VNGQISAESSRI 201 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + NQ R+ D + + T+ +D+P L R Sbjct: 202 FTHNQ----RSVCDYLCISGATLRSDNPTLNAR 230 >gi|115388877|ref|XP_001211944.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114196028|gb|EAU37728.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 624 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 62/215 (28%), Positives = 107/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL + E+R H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 380 FLEPYLPKYDERRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 439 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GTVLAD+P L CRL G P +++DP + + + ++++TA+ Sbjct: 440 IGVGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 499 Query: 242 LAPVIIVTEND--DPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP ++V+ DP + + + + Y L+ +L L G+ S+++E Sbjct: 500 KAPWVVVSPGAQIDPQKLMMLKGYGGDFLRIVEYNQNWRLRWEGILRALASEGIKSVMIE 559 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +D+II+ + +G GG+ Sbjct: 560 GGGTVLSELLNPEYTEFIDTIIVTVAPTYLGSGGV 594 >gi|116753917|ref|YP_843035.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanosaeta thermophila PT] gi|116665368|gb|ABK14395.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanosaeta thermophila PT] Length = 222 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 10/198 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + A+S D I V I+G +V LRA+SDA++VG+GTV+ADDP L Sbjct: 2 RPYVLINSAMSADGKISSFLRRQVRISGSEDLLRVERLRAESDAVMVGLGTVIADDPTLR 61 Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L+ +P+RI+ D + +++++ + V D L Sbjct: 62 VKSEALRSWRLERGVPENPLRIVADSRARTPPEARVLGPGCIVAVSRYAPEDR--LKELS 119 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + I I D DL++LL +L RGV L+VEGG + S I LVD I ++ +VI Sbjct: 120 ERCEIAICGEDRVDLRELLEMLYRRGVRRLMVEGGGTLNWSLIEQGLVDEICVFVGPMVI 179 Query: 321 GEGGIPSPLEEGYLEKNF 338 G P+ ++ +NF Sbjct: 180 GGQDAPTLVDGRGFPENF 197 >gi|226288491|gb|EEH44003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb18] Length = 665 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R R +TL A S D + + ++G SK H LR++ DAIL Sbjct: 377 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 436 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT +AD+P L CRL + P II+DP + S D ++++TA Sbjct: 437 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 496 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP IIV+ N P L + + + Y L+ +L L G+ S+++E Sbjct: 497 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 556 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G GG+ Sbjct: 557 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 591 >gi|295671871|ref|XP_002796482.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb01] gi|226283462|gb|EEH39028.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb01] Length = 655 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R R +TL A S D + + ++G SK H LR++ DAIL Sbjct: 368 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 427 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT +AD+P L CRL + P II+DP + S D ++++TA Sbjct: 428 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 487 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP IIV+ N P L + + + Y L+ +L L G+ S+++E Sbjct: 488 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 547 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G GG+ Sbjct: 548 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 582 >gi|225681364|gb|EEH19648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb03] Length = 668 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 67/215 (31%), Positives = 101/215 (46%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL R R +TL A S D + + ++G SK H LR++ DAIL Sbjct: 380 FLQPYLPRHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAIL 439 Query: 195 VGIGTVLADDPELTCRLN-------GLQEHSPMRIILDPHFKLSLDS--KIIKTAL---- 241 +G+GT +AD+P L CRL + P II+DP + S D ++++TA Sbjct: 440 IGVGTAMADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKG 499 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP IIV+ N P L + + + Y L+ +L L G+ S+++E Sbjct: 500 KAPWIIVSPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIE 559 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G GG+ Sbjct: 560 GGATVISELLNPEYVDFVDSLIVTVAPTFLGRGGV 594 >gi|320164473|gb|EFW41372.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Capsaspora owczarzaki ATCC 30864] Length = 593 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 16/223 (7%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + R +R ++ L A S D I + I+G S H LRA+ ILVGI TVL Sbjct: 366 MLRDQAERPYVVLSYAQSLDGCIAAEKGKPLAISGEASLVMTHRLRAEHAGILVGINTVL 425 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-----VL 256 AD+P LT RL + ++P I+LD H + L +K++ L P II + D ++ Sbjct: 426 ADNPSLTVRL--VSGNNPQPIVLDTHLRFPLTAKLLTATPLKPWIITSLTADASREQRLV 483 Query: 257 ALAFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--SRLVDSIIL 313 L R + I + L + L L G+ S++VEGGA+V SF+N S L+D +++ Sbjct: 484 ELGARVIRVPIDPATNSVSLVEALHALYRIGLPSVMVEGGASVIRSFLNHPSHLIDRLVV 543 Query: 314 YRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352 + +++ G S L ++ V+ + FG DV L Sbjct: 544 TIAPVIL--AGTHSTLDGKPQQPVALPQLRNVKYEQFGRDVVL 584 >gi|121714261|ref|XP_001274741.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1] gi|119402895|gb|EAW13315.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1] Length = 629 Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 63/215 (29%), Positives = 106/215 (49%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL +YL R EKR H+TL A S D+ I + ++G +K H LR++ DAIL Sbjct: 367 FLDSYLPRHDEKRHLPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAIL 426 Query: 195 VGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL---- 241 +G+GT LAD+P L CRL G P +++DP + + + ++++TA+ Sbjct: 427 IGVGTALADNPGLNCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKG 486 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP +IV+ P + + + + Y L+ +L L G+ S+++E Sbjct: 487 KAPWVIVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIE 546 Query: 294 GGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 GG V +N + +DS+I+ + +G GG+ Sbjct: 547 GGGTVLSELLNPEYAEFIDSMIVTVAPTYLGRGGV 581 >gi|126179969|ref|YP_001047934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] gi|125862763|gb|ABN57952.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanoculleus marisnigri JR1] Length = 226 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 11/205 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + IA+S D I V I+G +V ++A+SDAI+VGIGTVLAD+P LT Sbjct: 2 RPFVFVNIAMSADGKISTRERRQVRISGNEDYLRVDRIKAESDAIMVGIGTVLADNPSLT 61 Query: 209 CRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L ++ +P+RI++D + D+ I+ ++ V++ A Sbjct: 62 VKSPELRAERRAAGKDENPIRIVVDGRGRTPPDADILHKGSGKRIVAVSKKAPKKAVEAL 121 Query: 261 RKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 R++ ++ + DL+ LL L +GV L+VEGG + + LVD + + IV Sbjct: 122 REQAAVVVGGEETVDLRGLLEELHRQGVRRLMVEGGGTLIWTLFEQGLVDELQAFVGNIV 181 Query: 320 IGEGGIPSPLE-EGYL-EKNFMCVR 342 IG P+P + G+L E++F +R Sbjct: 182 IGGKEAPTPTDGAGFLREEDFPRLR 206 >gi|149239544|ref|XP_001525648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces elongisporus NRRL YB-4239] gi|146451141|gb|EDK45397.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces elongisporus NRRL YB-4239] Length = 245 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 20/218 (9%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL +YL + +TL A S D+ I ++ +K H LR++ DAILVG Sbjct: 13 FLESYLPAEKHNGPFVTLTYAQSLDSRIAAKVGVQTKLSHLETKTMTHYLRSKHDAILVG 72 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTAL-LAPVIIVTE- 250 + TV ADDP+L CR P ++LDP+ K + + KI K LAP+IIV E Sbjct: 73 VNTVQADDPKLNCRYGNELRIRP--VVLDPYRKWNFANSQLCKICKDGKGLAPIIIVDEL 130 Query: 251 -------NDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 ND+ AL + +I + + + L G+ +++VEGGA + + Sbjct: 131 VQLGESKNDEDATELNALGGEYIALPLIEKRMSNWQLIFDKLYKNGLKTIMVEGGATIIN 190 Query: 301 S-FINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEK 336 +N LVDS+I+ + + +G+ G+ SP +E L+ Sbjct: 191 ELLLNRDLVDSLIITVAPVFLGKEGVEVSPSKEVRLQN 228 >gi|75761016|ref|ZP_00741019.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491502|gb|EAO54715.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 148 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 40/91 (43%), Positives = 54/91 (59%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 55 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 114 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 A+ AT YVTLEPCSH+G+ +IE G+ Sbjct: 115 AKDATVYVTLEPCSHFGKHHLVVNXLIEKGV 145 >gi|213616341|ref|ZP_03372167.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 127 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 57/123 (46%), Positives = 75/123 (60%), Gaps = 1/123 (0%) Query: 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 ++G G G PHAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RV Sbjct: 2 IVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARV 61 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V + DP+ +V+GRGL L Q GI V +M SE + +L R ++ LK+ S Sbjct: 62 VAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGAS 121 Query: 160 QDN 162 D Sbjct: 122 VDG 124 >gi|296272024|ref|YP_003654655.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM 7299] gi|296096199|gb|ADG92149.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM 7299] Length = 335 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 103/232 (44%), Gaps = 37/232 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + + LT NP+V C++VK+G ++ G HAEV AL+ A + Sbjct: 5 DKFYMKLAIDEAWKYQLLTYPNPAVGCVVVKNGEILAIEAHKEAGMSHAEVNALKAAYLK 64 Query: 67 ARGATA---------------------------YVTLEPCSHYGRSPPCAQFIIECGIRR 99 YVTLEPC+H G++P CA + E +R Sbjct: 65 KHANDTLKIKKSSREIHEYLLKNHNNFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPKR 124 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 V++ +D + + SG G+Q L I I M+ E L+ ++ + + + K+A Sbjct: 125 VIIAHEDTNKQASG-GIQTLESVNIDITLDCMKKEAYDLLYPFI--KWNSGTFVFYKMAQ 181 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + + G ++ +++ VH LR + D +L+G TV D P L R Sbjct: 182 T------LNGSIDGKVSSTMAQLYVHTLRDKIDLMLIGGNTVRTDKPTLDAR 227 >gi|71023879|ref|XP_762169.1| hypothetical protein UM06022.1 [Ustilago maydis 521] gi|46101653|gb|EAK86886.1| hypothetical protein UM06022.1 [Ustilago maydis 521] Length = 253 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/227 (26%), Positives = 105/227 (46%), Gaps = 20/227 (8%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++R H+TL A S D I G + ++G S H LR D I+VGIGTVL D+P+ Sbjct: 25 DRRPHVTLTFAQSSDGKIAGPGKTQLALSGPESMRLTHQLRTMHDGIMVGIGTVLNDNPQ 84 Query: 207 LTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALA 259 L RL P ++LD ++ +D K+I+ P+++ ++ P Sbjct: 85 LNARLLYAPPPVSRLPRPVVLDSKLRMPVDCKLIRNYAAGIGRQPLVLTLDSAHPDRRTQ 144 Query: 260 FRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-NSRLVDSIIL 313 +++I D +L L G+ L+VEGGA V S + S+ +D++++ Sbjct: 145 LELAGVDVIQVHDSSAALLDWTTILQHLYDAGIRRLMVEGGAGVIDSLMQQSQHIDALLV 204 Query: 314 YRSQIVIGEGG------IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + +G G +PS + E + + + R +FG D + + Sbjct: 205 TIAPLTVGSEGFSFTSKLPS-ISEAHPDAEWSLPSRAWFGKDEVIVW 250 >gi|150402518|ref|YP_001329812.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C7] gi|150033548|gb|ABR65661.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C7] Length = 360 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 78/300 (26%), Positives = 144/300 (48%), Gaps = 37/300 (12%) Query: 88 CAQFIIECGIRRVVVCVD-DPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 A +I I V++ D D RV + ++ +GI V+ ++ E + H L Sbjct: 58 IADDLIAKNIPEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSHGDLKDI 117 Query: 146 VEKRSHITLKIAVSQD----------NMIGMAGCGSVP-------ITGFISKNQVHLLRA 188 +I+ +I ++ D + +GM G + I+G +VH +R Sbjct: 118 ESLYPYISRRITINGDLSDIMVPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRK 177 Query: 189 QSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLA 243 DAILVGIGTVL DDP LT ++N + +P+RI++D K+SL+++++ KT + Sbjct: 178 DVDAILVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSSLKISLNARVLNKDAKTVIAT 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I E ++ + L ++ I ++ + DL+K++ + G+ +L+EGG + Sbjct: 238 TTPISDEKEEKIRKL--KEMGITVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWG 295 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNF-MCVR---RDYFGSD--VCLEY 354 L++ + +Y + V G P+ ++ EG+ KN C + ++Y+ D + LEY Sbjct: 296 MFKENLINEVRVYIAPKVFGGANSPTYVDGEGF--KNVEECTKLELKNYYPLDDGIVLEY 353 >gi|73668036|ref|YP_304051.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina barkeri str. Fusaro] gi|72395198|gb|AAZ69471.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanosarcina barkeri str. Fusaro] Length = 232 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 11/181 (6%) Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-------- 208 A+S D + V I+G + +V LRAQ+DA++VGIGTVL+DDP LT Sbjct: 11 AMSADGKLSTKERKQVRISGKLDFERVDELRAQADAVMVGIGTVLSDDPSLTVKSPKRKA 70 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R + +P+RII+D + LD+ I K +I V+ + P + +K +I Sbjct: 71 ARKAAGKNENPVRIIVDSSARTPLDADIFKKGDGLRIIAVSTS-APAEKIEKLEKKALVI 129 Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 DL++L+ +L G+ L+VEGGA + +++ LVD I + +IG P Sbjct: 130 KAGTEKVDLQELVRVLKKMGINILMVEGGATLNWGMLSAGLVDEIYTFVGNFIIGGATAP 189 Query: 327 S 327 + Sbjct: 190 T 190 >gi|323455737|gb|EGB11605.1| hypothetical protein AURANDRAFT_15038 [Aureococcus anophagefferens] Length = 161 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 57/173 (32%), Positives = 89/173 (51%), Gaps = 17/173 (9%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 H+TLK+AV + + G S T S + VH LR SDA+LVG+ TV DDP LT Sbjct: 1 HVTLKVAVDRFGAVDDLGGKSGRFTSPASLDCVHRLRRGSDAVLVGVSTVARDDPSLTVR 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265 R++ + + P+R+ILDP+ + D+ ++ L P + + D DP +AL + Sbjct: 61 RVDPIDDAQPLRVILDPNGRAPRDAALLTDGL--PTAVFSRGDFGAVDPAVALEPFGELP 118 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ RD GV L+VEGG A +F+ + LVD ++ R+ + Sbjct: 119 TMLDALERD----------HGVAHLMVEGGPFTARAFLAAGLVDRAVIVRAPV 161 >gi|154305619|ref|XP_001553211.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10] gi|150853143|gb|EDN28335.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10] Length = 281 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/203 (30%), Positives = 100/203 (49%), Gaps = 32/203 (15%) Query: 151 HITLKIAVSQDNMIGM-AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H TL A S D+ I M G GS P++G SK H LR++ DAIL+G+ T +AD+P L C Sbjct: 38 HTTLTFATSMDSQITMRPGIGS-PLSGPASKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96 Query: 210 RLNGLQ--------EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPV 255 R+ G+ + P +I+DP + DSKI AP II + +D Sbjct: 97 RIEGVGGYGGGENLKGQPRPVIIDPKGRWNFGEDSKIFGLVKDGRGKAPWIITAQQED-- 154 Query: 256 LALAFRKKNI------NIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI- 303 ++F KK++ I+ + +L L G+ SL++EGGA + + + Sbjct: 155 -EISFEKKDLLRATSGKFIHLSPDKEGRFSWQDILEALWKEGIESLMIEGGAGIINDMLA 213 Query: 304 -NSRLVDSIILYRSQIVIGEGGI 325 +D +I+ + + +G+GG+ Sbjct: 214 EGQVFIDGVIVTIAPVWLGKGGV 236 >gi|261188103|ref|XP_002620468.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081] gi|239593343|gb|EEQ75924.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081] gi|239609085|gb|EEQ86072.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ER-3] gi|327356427|gb|EGE85284.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ATCC 18188] Length = 666 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 26/215 (12%) Query: 137 FLHAYLTRQVEKRSH--ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 FL YL E R +TL A S D + + ++G +K H LR++ DAIL Sbjct: 364 FLQPYLPSYEEGRQFPFVTLTYASSMDAKVSLFPGIQTALSGPETKVMTHYLRSRHDAIL 423 Query: 195 VGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDS--KIIKTALL--- 242 +G+GT +AD+P L CR + P II+DP + D +++KTA Sbjct: 424 IGVGTAIADNPGLNCRLAGAGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKAGKG 483 Query: 243 -APVIIVTE--NDDPVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVE 293 AP +IV+ N P L + + + Y L+ +L L GVTS+++E Sbjct: 484 KAPWVIVSPGANIQPAKVLTLKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGVTSVMIE 543 Query: 294 GGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 GGA V +N VDS+I+ + +G GG+ Sbjct: 544 GGATVISELLNPEYVDFVDSLIITLAPTFLGRGGV 578 >gi|46121465|ref|XP_385287.1| hypothetical protein FG05111.1 [Gibberella zeae PH-1] Length = 265 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 104/199 (52%), Gaps = 22/199 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R +TL A S D+ + +A ++G SK H LR++ DAIL+G+ T+LAD P L Sbjct: 28 SRPFVTLTFATSLDSSLSLAPGVRTRLSGPDSKAMTHYLRSRHDAILIGVSTLLADYPAL 87 Query: 208 TCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL----LAPVIIVTEN--DDPVLALA 259 CR++G P I++DPH + S K+++ A LAP ++ + D P +L Sbjct: 88 NCRISGATSQ-PRPIVIDPHLRWTPSHTDKVLEVARLGNGLAPFVLTGMDIQDVPAKSLE 146 Query: 260 FRKKN-------INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-- 307 +++ + + R D + + L+ ++S++VEGG + +S ++SR Sbjct: 147 IIEEHGGKYMQVPTTLGSNGRKRFDWRDVFDALLRENLSSVMVEGGGQIINSLLDSRFHN 206 Query: 308 -VDSIILYRSQIVIGEGGI 325 +DS+I+ + +G+GG+ Sbjct: 207 DIDSVIVTIAPTWLGQGGV 225 >gi|307083978|ref|ZP_07493091.1| putative cytidine and deoxycytidylate deaminase zinc-binding region [Mycobacterium tuberculosis SUMu012] gi|308366380|gb|EFP55231.1| putative cytidine and deoxycytidylate deaminase zinc-binding region [Mycobacterium tuberculosis SUMu012] Length = 132 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/125 (42%), Positives = 67/125 (53%), Gaps = 3/125 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSID-EAMGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYGR+PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLAAGAIVVVTMEPCNHYGRTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIV 126 G+ V Sbjct: 124 AGLQV 128 >gi|21226928|ref|NP_632850.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina mazei Go1] gi|20905237|gb|AAM30522.1| conserved protein [Methanosarcina mazei Go1] Length = 228 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 12/202 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R I + A+S D + V I+G + ++ LRA +DAI+VGIGTVLADDP LT Sbjct: 3 RPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPSLT 62 Query: 209 --------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R + +P+R+++D + L++ I K +I V+ N P + Sbjct: 63 VKSPERKAARKAAGKSENPVRVVVDSSARTPLNADIFKKGEGLRIIAVS-NSAPEEKIRM 121 Query: 261 RKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ +I DL +L L G+ SL+VEGGA + +++ LVD + + + Sbjct: 122 LEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGATLNWGMLSAGLVDEVYTFVGNL 181 Query: 319 VIGEGGIPSPLE-EGYLEKNFM 339 +IG P+ + EG+ E + Sbjct: 182 IIGGKTAPTFTDGEGFTENELL 203 >gi|296819637|ref|XP_002849879.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480] gi|238840332|gb|EEQ29994.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480] Length = 630 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 42/229 (18%) Query: 137 FLHAYLTRQVEKR--------------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 FL YL + R H+TL A S D I ++G +K Sbjct: 343 FLEPYLPKSSRTRYNANIITNTANPRFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAM 402 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLD 233 H LR++ DAI++G+GT LADDP L CRL G P +I+DP + S + Sbjct: 403 THYLRSRHDAIIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWPASPE 462 Query: 234 SKIIKTAL----LAPVIIVTENDD--PVLALAFRKKNINIIYCDCRD--------LKKLL 279 S+++KTA AP +IV+ + P L ++ + Y R+ + + Sbjct: 463 SRLLKTAAEGKGKAPWVIVSPGAELHPEKLLLLKRHGGD--YLRIREYNPHWRLRWEAIF 520 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLV---DSIILYRSQIVIGEGGI 325 L +G+ SL++EGG V +N V DS+I+ + +G GG+ Sbjct: 521 GALANQGIQSLMIEGGGVVLSELLNPEYVDFIDSVIVTVAPTYVGRGGV 569 >gi|313126634|ref|YP_004036904.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase [Halogeometricum borinquense DSM 11551] gi|312292999|gb|ADQ67459.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Halogeometricum borinquense DSM 11551] Length = 220 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 93/197 (47%), Gaps = 12/197 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 H+ + A S D + + I+G +V +RA SDA+LVG+GTVLADDP LT Sbjct: 2 HVVVNAATSADGKLSTRRREQIKISGADDFARVDRVRADSDAVLVGVGTVLADDPHLTVD 61 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R + +E P R++ D + D++I+ A ++V+E+ A K Sbjct: 62 DADYRDERQSDGREPHPARVVADSRARTPTDARILDDAATT-YVLVSESAPADRVSALEK 120 Query: 263 KNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ D R + L RG+ L+VEGG V S LVD + +Y +V+ Sbjct: 121 TGGTVVTAGDTRVSFPEAFAELEARGIDRLMVEGGGEVIFSLFEDELVDELSVYVGSVVL 180 Query: 321 GEGGIPSPLE-EGYLEK 336 G P+ + +G++E Sbjct: 181 GGRDAPTLADGDGFVES 197 >gi|48477782|ref|YP_023488.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790] gi|48430430|gb|AAT43295.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790] Length = 185 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 18/166 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + +A+S + I GS+ I+ + N+ LR DA+L+G GTV+ D+PEL Sbjct: 2 RPYVIINVAMSLNGRISSIN-GSIKISDYYDWNRTIDLRKSVDAVLIGAGTVMVDNPEL- 59 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 +H+ RIILD ++KL+ + K+ + P I+T D + KN+ +I Sbjct: 60 -------KHARSRIILDGNYKLNDNYKVFDGGV--PTYIITGVDVSL-------KNVIVI 103 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + D+K +L +L G+ S+LVEGGA V F ++L D +Y Sbjct: 104 KLNDLDMKNILNVLYEHGIKSILVEGGANVISQFFLNKLYDEFYIY 149 >gi|169836056|ref|ZP_02869244.1| riboflavin biosynthesis protein RibD [candidate division TM7 single-cell isolate TM7a] Length = 66 Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 37/63 (58%), Positives = 46/63 (73%), Gaps = 3/63 (4%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPP 87 V ++V+DG VIG G Y G PHAEV ALEEA + ++ AT YVTLEPCSHYG++PP Sbjct: 2 VGAVVVQDGKVIGTGYHKYFGGPHAEVYALEEAAQNSKDLSNATIYVTLEPCSHYGKTPP 61 Query: 88 CAQ 90 CA+ Sbjct: 62 CAE 64 >gi|219848143|ref|YP_002462576.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aggregans DSM 9485] gi|219542402|gb|ACL24140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aggregans DSM 9485] Length = 222 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 101/218 (46%), Gaps = 19/218 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TL A + D + S I+ S + H LRA SDAI+VG+GTVL DDP LT Sbjct: 3 RPRVTLSFAQTLDGRVAAVDGSSQWISSADSLHFCHSLRAASDAIMVGVGTVLRDDPRLT 62 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVIIVTENDDPVLALAFRKKNINI 267 RL ++ P+R+I+D + + +I+ A V+ T R+ I Sbjct: 63 VRL--VEGCDPVRVIVDSTLRTPPTAAVIRDGAARGTVLACTAAAPSERRTVLRELGATI 120 Query: 268 IYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + DL LL L RG+ S++VEGGA + + + LVD++ + + +++G Sbjct: 121 LTLPATPDGKVDLVALLASLAERGIASIMVEGGACLITGLLRAHLVDAVAITIAPLILGA 180 Query: 323 GGIPSPLEEGYLEKNFMC-------VRRDYFGSDVCLE 353 G P G L + VR +G DV LE Sbjct: 181 G----PAAVGDLGITTLAQAIKLGDVRWTTYGVDVVLE 214 >gi|11499589|ref|NP_070831.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM 4304] gi|6225946|sp|O28272|RIB7_ARCFU RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2648530|gb|AAB89247.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM 4304] Length = 219 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 64/199 (32%), Positives = 101/199 (50%), Gaps = 13/199 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + +A S D I + I+ V LRA+SDAI+VGIGTVLADDP LT Sbjct: 2 RPYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLT 61 Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L+E +P+R+++D ++ L ++I+ A ++ P + Sbjct: 62 VKSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDE--ARTLVAVSRIAPEEKVRE 119 Query: 261 RKKNINI-IYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 KK + ++ + R +L LL L +GV L+VEGG + S I+ LVD I +Y I Sbjct: 120 VKKVAEVAVFGEERVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPI 179 Query: 319 VIGEGGIPSPLE-EGYLEK 336 IG P+ + E +L+K Sbjct: 180 FIGGRDSPTVCDGESFLKK 198 >gi|254292424|ref|YP_003058447.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia baltica ATCC 49814] gi|254040955|gb|ACT57750.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia baltica ATCC 49814] Length = 215 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/147 (37%), Positives = 78/147 (53%), Gaps = 9/147 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P D +M A+ +R +G T+ NP+VAC++V +IG T GG PHAE AL Sbjct: 4 LPEIEMDKIYMRRAIALARAQLGRTAPNPAVACVLVSGETIIGEAATGDGGRPHAEEIAL 63 Query: 61 EE-AGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E G+E ATAYVTLEPC S C+ ++ G++RVV+ DP + G+ Sbjct: 64 ESLRGQELSRATAYVTLEPCHSRSNGGAGCSDRLVVSGVKRVVIAQIDPHP-TAKDGIAK 122 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTR 144 L G+ V+ ++E E A LTR Sbjct: 123 LKAAGLDVEVGLLEDEA-----AELTR 144 >gi|288560264|ref|YP_003423750.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD [Methanobrevibacter ruminantium M1] gi|288542974|gb|ADC46858.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD [Methanobrevibacter ruminantium M1] Length = 226 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 54/184 (29%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + ++ L A++ D I GS I+G +VH +R + D I+VGIGTVLADDP LT Sbjct: 2 KPYVILNAAMTLDGKIA-TKTGSSEISGKEDLERVHEIRKKVDGIMVGIGTVLADDPRLT 60 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKT---ALLAPVIIVTENDDPVLALAFRK-- 262 ++N +E +P+RI++D + L+ +I+ ++A I E ++ A ++ Sbjct: 61 VHKINARKEDNPIRIVVDNKARTPLNFRILNDDAETIIAVSSICDERNENCDEEAVKRAK 120 Query: 263 ---KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 K +N+ Y + DL + + L G+ S+++EGG+ + S I L+D + + + Sbjct: 121 ELEKRVNVFYSTGETVDLVEFMEYLYDYGIKSIMLEGGSTLNFSMIRDGLIDEVKICIAP 180 Query: 318 IVIG 321 +++G Sbjct: 181 MIVG 184 >gi|261403330|ref|YP_003247554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus vulcanius M7] gi|261370323|gb|ACX73072.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus vulcanius M7] Length = 219 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 101/184 (54%), Gaps = 14/184 (7%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +RA+ D I+VGIGTVL DDP LT + +P+RI++D ++ L+++++ + Sbjct: 34 RVHKIRAKVDGIMVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNSD- 91 Query: 242 LAPVIIVTEND----DPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGG 295 A II T D +++ I+I+ C + DL+KL+ +L +G+ ++L+EGG Sbjct: 92 -AKTIIATTEDLDEEKQKKIKILKERGIDIVMCGEEKVDLRKLMNVLYKKGIKTILLEGG 150 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYL--EKNFMCVRRDYF--GSDV 350 + LVD + +Y + + G P+ ++ EG+ E++ ++++ G + Sbjct: 151 GTLNWGMFKEGLVDEVSVYIAPKIFGGKNAPTYVDGEGFKSEEESVKLELKNFYRLGEGI 210 Query: 351 CLEY 354 LE+ Sbjct: 211 VLEF 214 >gi|257388460|ref|YP_003178233.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halomicrobium mukohataei DSM 12286] gi|257170767|gb|ACV48526.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Halomicrobium mukohataei DSM 12286] Length = 223 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 96/196 (48%), Gaps = 10/196 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-- 208 H+ + A+S D + + I+G ++V LRA+SDA++VG+GTVLADDP LT Sbjct: 2 HVVVNAAMSADGKLSTRRREQIEISGTRDFDRVDELRAESDAVMVGVGTVLADDPSLTLD 61 Query: 209 ------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFR 261 R + + +P R++ D + D++++ A L +++ D V + Sbjct: 62 DPERQRAREDRGEPANPARVVADSQVRTPPDARVLDEAALTYLLVSQAALTDFVTQMEDV 121 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + D DL L L G G+ L+VEGG + S LVD + ++ VIG Sbjct: 122 GATVIVAGEDRVDLVTALAKLEGDGIDQLMVEGGGELIFSLFEEGLVDELSVFVGSTVIG 181 Query: 322 EGGIPSPLE-EGYLEK 336 P+ + EG++E+ Sbjct: 182 GRDAPTLADGEGFVEE 197 >gi|186681940|ref|YP_001865136.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] gi|186464392|gb|ACC80193.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] Length = 143 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/138 (39%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 FM AAL SR + NP V C+ V ++ +G T G HAE AL+ G+ Sbjct: 6 FMLAALAQSRKALPECLPNPPVGCVNVDVQEIVAQGYTQVPGKHHAEADALKRIQGKGFN 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 YVTLEPCS +GR+P CA I E C I + V + DPD R +G+GL L + G V Sbjct: 66 FLKMYVTLEPCSFHGRTPACALAIAEDCRIHEIYVSILDPDPRNNGQGLDILRKAGKTVY 125 Query: 128 -RMMESEGKIFLHAYLTR 144 + +E FL+ YL R Sbjct: 126 VGLCANEVNTFLNQYLLR 143 >gi|212716410|ref|ZP_03324538.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM 16992] gi|212660663|gb|EEB21238.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM 16992] Length = 310 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 75/143 (52%), Gaps = 9/143 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAGE 65 ++M+ AL + G + NP V ++V+DG ++ G PHAE A + E G Sbjct: 28 KYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHGV 87 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL L + G+ Sbjct: 88 DMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLCILEENGVE 147 Query: 125 IVDRMMESE----GKIFLHAYLT 143 +V +M +E + F H Y+T Sbjct: 148 VVYDVMRAECDAINRHFFH-YIT 169 >gi|70985705|ref|XP_748358.1| riboflavin biosynthesis protein Rib7 [Aspergillus fumigatus Af293] gi|66845987|gb|EAL86320.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus fumigatus Af293] Length = 280 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 98/199 (49%), Gaps = 26/199 (13%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L CR+ Sbjct: 42 TLTFATSLDSALALSPGAKTALSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101 Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259 E P I++DP + + +SKI+ A AP I+ P A Sbjct: 102 GVGGYGGQGLEGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAEKKA 161 Query: 260 FRKK------NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306 ++ +++++ + D LL L G+ S+++EGGA + +S + Sbjct: 162 LLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221 Query: 307 LVDSIILYRSQIVIGEGGI 325 L+DS+I+ + +G+GG+ Sbjct: 222 LIDSVIVTIAPTWLGQGGV 240 >gi|114570085|ref|YP_756765.1| deaminase-reductase domain-containing protein [Maricaulis maris MCS10] gi|114340547|gb|ABI65827.1| bifunctional deaminase-reductase domain protein [Maricaulis maris MCS10] Length = 191 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/179 (33%), Positives = 90/179 (50%), Gaps = 28/179 (15%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R +TLK+A S D I +A S ITG S+ VH +RA DA+L GIGT+LADDP LT Sbjct: 6 RPLVTLKLATSLDGKIALANGVSQWITGPESRAVVHRMRAAHDAVLTGIGTILADDPRLT 65 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R G E P II+D ++ P A F+ + ++ Sbjct: 66 ARPEGGCERQPDVIIMD-----------------------SQGRTPATAQVFKGGDRSVT 102 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 RDL++ + +G +++E GA +A + I + LVD I +R+ +V+G G+P+ Sbjct: 103 LIPHRDLERAM-----KGCERVMIEAGARIAAAAIQAGLVDRIEWFRAPMVLGGDGLPA 156 >gi|284162163|ref|YP_003400786.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus profundus DSM 5631] gi|284012160|gb|ADB58113.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus profundus DSM 5631] Length = 222 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 54/158 (34%), Positives = 87/158 (55%), Gaps = 13/158 (8%) Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTC--------RLNGLQEHSPMRIILDPHFKLSL 232 +V LRA+SDAI+VGIGTVL+D+P+LT RL ++ +P+R+++D ++ L Sbjct: 34 KRVDELRAKSDAIMVGIGTVLSDNPKLTVKSEELRKRRLEEGRDANPIRVVVDSKCRIPL 93 Query: 233 DSKIIKTALLAPVIIVTE---NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 D+K++ + A I+ N + V L ++ + D DLK L+ L GV Sbjct: 94 DAKVLDES--AKTIVAVSRIANSEKVNTLRRMGVDVFVAGDDKVDLKALVEYLYKIGVRV 151 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 L+VEGGA + + + LVD I +Y ++IG P+ Sbjct: 152 LMVEGGATLNWAMLREGLVDEIYVYYGNMIIGGSKAPT 189 >gi|32266337|ref|NP_860369.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC 51449] gi|32262387|gb|AAP77435.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC 51449] Length = 348 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 37/241 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M ++S D F+ + L NPSV L+V K G ++ + V G PHAEV A Sbjct: 1 MFLNSSDELFLHYCCSLAWESQTLALPNPSVGALVVDKYGQILSQAVHKVAGSPHAEVLA 60 Query: 60 LEEAGEEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFI 92 ++ A G T YV+LEPC+HYG++PPC+Q + Sbjct: 61 IQAAYHTLSGDDEIVKLHKSKDIHTYLLAHHNGLFKECTLYVSLEPCNHYGKTPPCSQLL 120 Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHAYLTRQVEKRS- 150 G RV + +D +G G +LSQ GI V + + + H + ++ +++ Sbjct: 121 SSLGFSRVCIATNDTHALAAG-GANYLSQVGINVCYIQSPTLQHLATHLLMPFEILRKNG 179 Query: 151 -HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 K+A+ D I+ IS+ H R+ D I V T+ D+P+L Sbjct: 180 RFALFKLALRLDGSYTQG-----RISSDISRQFTHNQRSVCDWICVSGNTLRNDNPQLNA 234 Query: 210 R 210 R Sbjct: 235 R 235 >gi|307324661|ref|ZP_07603867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces violaceusniger Tu 4113] gi|306889543|gb|EFN20523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces violaceusniger Tu 4113] Length = 238 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 V+ R + K A + D I A S IT S+ +VH LRA A +VG GT AD+P Sbjct: 15 VDGRPFVVYKYAATLDGRIAAADSTSQWITSAESRAEVHALRAACQATVVGSGTQQADNP 74 Query: 206 ELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 L R + + P R+I+D + + D++++ A AP +I +D Sbjct: 75 HLAVRSVKDDPKLKVAVPVDQQPWRVIVDTNARTPADARVLDDA--APTMIAVADDADAS 132 Query: 257 ALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 L + + D++ LL L RGV + +EGG +A SF+++ LVD I+ Y Sbjct: 133 HLEGVATVVRLPRAKVGLDVEALLRALHRRGVRGMFLEGGPTLAASFVSAGLVDRIVAYI 192 Query: 316 SQIVIGEGGIPSPLEEGYLE 335 + ++G G S LE G +E Sbjct: 193 APALLGRG--KSGLEGGTIE 210 >gi|302895311|ref|XP_003046536.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI 77-13-4] gi|256727463|gb|EEU40823.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI 77-13-4] Length = 268 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 100/208 (48%), Gaps = 23/208 (11%) Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 + L + R +TL A S D+ + +A ++G SK H LR++ AIL+G+ T Sbjct: 22 STLAQGTPSRPFVTLTFATSLDSSLSLAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVST 81 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS--KIIKTAL----LAPVIIV---TE 250 +LAD P L CR+ G P II+DPH + D K+++ A LAP ++ +E Sbjct: 82 LLADSPALNCRIAGAARQ-PRPIIIDPHLRWVPDPTDKVLEVARLGTGLAPFVLTGVGSE 140 Query: 251 NDDPVLALAFRKKNINIIYCDCR----------DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + A + I+ D + + L+ +TS++VEGG + + Sbjct: 141 SLPAASAALLEQHGGKYIHVPATSSGPGSRMRFDWRAVFDALLREHLTSVMVEGGGQIIN 200 Query: 301 SFINSR---LVDSIILYRSQIVIGEGGI 325 S +N ++DS+I+ + +G+GG+ Sbjct: 201 SLLNPTFHDMIDSVIVTIAPTWLGQGGV 228 >gi|288818933|ref|YP_003433281.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6] gi|288788333|dbj|BAI70080.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6] gi|308752520|gb|ADO46003.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Hydrogenobacter thermophilus TK-6] Length = 220 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 79/148 (53%), Gaps = 7/148 (4%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H +RA+ D I+VG TV D+P LT R +Q +P+RII + LD+ I Sbjct: 41 LHEIRAKVDGIMVGCETVRTDNPSLTVRY--VQGKNPVRIIPCSTANVPLDANIFSKD-- 96 Query: 243 APVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP II+T +D V + + ++ D D KL+ +LV RG+ SL+VEGGA++ Sbjct: 97 APTIIITTKRAPEDKVEKIKEVGAEVWVVGEDLVDFDKLMPMLVERGIKSLMVEGGASIN 156 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 FI VD I L +++G +P+ Sbjct: 157 WEFIKRGFVDEIRLIHLPVIVGGENVPT 184 >gi|78776878|ref|YP_393193.1| riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans DSM 1251] gi|78497418|gb|ABB43958.1| Riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans DSM 1251] Length = 336 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/231 (28%), Positives = 106/231 (45%), Gaps = 37/231 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 +M AL + + GLT NP+V C+I+ K G ++ G PHAEV+AL+ A Sbjct: 8 YMRLALNEAWKYQGLTYPNPAVGCVIISKSGEILALEAHKRAGLPHAEVEALKSAYIVLS 67 Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + + AT Y TLEPCSH G++P CA I + I++++ Sbjct: 68 GDKKILELTESAQIHNYLLENHNDYFKDATIYTTLEPCSHIGKTPSCATLISKLNIKKLI 127 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 V D + SG G + ++ G+ + +M+ E L + Q +K + K A Sbjct: 128 VGSLDSNEIASG-GNKVVNDAGVEIKYGVMQKECDELLLPFWLWQKDK--FVFFKWAQRL 184 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + + G + I+ S+ +VH +R D +++G +V D P L RL Sbjct: 185 NGTVD----GGI-ISSSKSRTKVHAMRDVCDLLVIGGNSVRVDRPTLDARL 230 >gi|119473533|ref|XP_001258642.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya fischeri NRRL 181] gi|119406795|gb|EAW16745.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya fischeri NRRL 181] Length = 280 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 108/233 (46%), Gaps = 33/233 (14%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L CR+ Sbjct: 42 TLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101 Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259 E P I++DP + + SKI+ A AP II P A Sbjct: 102 GVGGYGGQGLEGQPRPIVIDPSARWDFTESSKILTLAWEGRGRAPFIITGAQAVPAEKKA 161 Query: 260 FRKK------NINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306 ++ +++++ + D LL L G+ S+++EGGA + +S + Sbjct: 162 LLERHGGKFISLDVVTSETGEHRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-------FMCVRRDYFGSDVCL 352 L+DS+I+ + +G+GG+ + + E+ V+ FG DV L Sbjct: 222 LIDSVIVTIAPTWLGQGGVVVSPKRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274 >gi|52550255|gb|AAU84104.1| pyrimidine reductase [uncultured archaeon GZfos37B2] Length = 225 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 95/190 (50%), Gaps = 12/190 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ + A+S D I +PI+G + +V L+ +DAI+VGIGTVL D+P LT Sbjct: 2 RPYVFINAAMSADGKISAYTRKQIPISGEVDFRRVDRLKYGADAIMVGIGTVLTDNPSLT 61 Query: 209 CRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L+ + +P+RI+ D + +D+ I+ +I+V+E+ V Sbjct: 62 VKSEELRKERRDLGTDENPIRIVADSLARTPVDADILMKGAGRRIILVSESAPGVRLDRL 121 Query: 261 RKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 R+ I+ DL L L GV ++VEGG ++ S + LVD++ +Y + Sbjct: 122 REAGAEIVVAGEHRIDLASALGRLYEMGVRRMMVEGGGSLNWSLLYQGLVDAVYVYVGNM 181 Query: 319 VIGEGGIPSP 328 ++ GG SP Sbjct: 182 IL--GGESSP 189 >gi|256810581|ref|YP_003127950.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus fervens AG86] gi|256793781|gb|ACV24450.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus fervens AG86] Length = 219 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 96/188 (51%), Gaps = 22/188 (11%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +RA D I+VGIGTVL DDP LT + +P+RI++D ++ L+++++ Sbjct: 35 RVHKIRANVDGIMVGIGTVLKDDPRLTIH-KIKSDKNPVRIVVDSKLRIPLNARVLNKD- 92 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY------CDCR----DLKKLLTILVGRGVTSLL 291 A II T D ++K INI+ C DLKKL+ IL +G+ S+L Sbjct: 93 -AKTIIATTEDTD----EEKEKKINILKEMGVDVVKCGKGRVDLKKLMEILYNKGIKSIL 147 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYF-- 346 +EGG + LVD + +Y + + G P+ ++ + CV+ ++++ Sbjct: 148 LEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGKGFKTADECVKLELKNFYRL 207 Query: 347 GSDVCLEY 354 G + LE+ Sbjct: 208 GEGIVLEF 215 >gi|159128508|gb|EDP53623.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus fumigatus A1163] Length = 280 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 26/199 (13%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L CR+ Sbjct: 42 TLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNCRIA 101 Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPVLALA 259 + P I++DP + + +SKI+ A AP I+ P A Sbjct: 102 GVGGYGGQGLQGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAEKKA 161 Query: 260 FRKK------NINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SR 306 ++ +++++ + D LL L G+ S+++EGGA + +S + Sbjct: 162 LLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPSYQN 221 Query: 307 LVDSIILYRSQIVIGEGGI 325 L+DS+I+ + +G+GG+ Sbjct: 222 LIDSVIVTIAPTWLGQGGV 240 >gi|325959850|ref|YP_004291316.1| Riboflavin-specific deaminase domain-containing protein [Methanobacterium sp. AL-21] gi|325331282|gb|ADZ10344.1| Riboflavin-specific deaminase domain protein [Methanobacterium sp. AL-21] Length = 226 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/167 (32%), Positives = 95/167 (56%), Gaps = 6/167 (3%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 ++ + L A++ D I GS I+G +VH LR + DAI+VGI TVLADDP L Sbjct: 7 EKPYTILNSAMTLDGKIA-TKTGSSEISGQEDLVRVHELRMEVDAIMVGINTVLADDPRL 65 Query: 208 TC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 T ++ + +P+RI++D + L+ +I+ + ++ VT+ DPV K+ ++ Sbjct: 66 TVHKIPSSKSDNPLRIVVDSRARTPLNFRILNSD-AKTLLAVTQAADPVKVNKL-KQLVD 123 Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 ++ C + DLK L+ L G+ +L++EGG+ + +S ++ LVD + Sbjct: 124 VVVCGEKHVDLKNLMKHLYELGIKTLMLEGGSTLNYSMLSEGLVDEV 170 >gi|34558306|ref|NP_908121.1| putative riboflavin-specific deaminase [Wolinella succinogenes DSM 1740] gi|34484025|emb|CAE11021.1| PUTATIVE RIBOFLAVIN-SPECIFIC DEAMINASE EC 3.5.4 [Wolinella succinogenes] Length = 344 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 38/232 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + + GLT NP+V L++ + G ++ G PHAEV AL+E Sbjct: 13 YMELALQEAWKYQGLTLPNPAVGALLLGEHGEILSIAAHQRAGSPHAEVLALQEGYARLS 72 Query: 69 GA---------------------------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 G T YVTLEPC+HYG++PPC++ + + V+ Sbjct: 73 GNADILALHDSSQIHDYLLAHSQGIFRHCTLYVTLEPCNHYGQTPPCSELLARLKPKSVI 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG--KIFLHAYLTRQVEKRSHITLKIAVS 159 + DP+ + SG G+ L + GI V ++ E K+ L +++K+ + Sbjct: 133 IGKRDPNPKASG-GIDRLKEAGIAVHTGIKEEACHKLLLP---FERLQKQGYFRFFKWAQ 188 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + N G G + + S+ VH LR + D +++ T AD+P L RL Sbjct: 189 RLN--GTLSPGII--SSSSSRAHVHALRDRIDLLVISGKTARADNPWLDARL 236 >gi|119025436|ref|YP_909281.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis ATCC 15703] gi|118765020|dbj|BAF39199.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis ATCC 15703] Length = 317 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 54/141 (38%), Positives = 73/141 (51%), Gaps = 9/141 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ AL +R G NP V ++V+DG V+ G PHAE A + A G + Sbjct: 49 MAQALELARKGAGWVDPNPLVGAVVVRDGEVLATGYHDRYRGPHAERMAFDYADAHGIDL 108 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ +V Sbjct: 109 TGATVIDTLEPCCHVGSQPACTALILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEVV 168 Query: 127 DRMMESE----GKIFLHAYLT 143 +M E + F H Y+T Sbjct: 169 RDVMREECDAINRHFFH-YIT 188 >gi|224419196|ref|ZP_03657202.1| putative riboflavin-specific deaminase [Helicobacter canadensis MIT 98-5491] gi|253828126|ref|ZP_04871011.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|313142700|ref|ZP_07804893.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|253511532|gb|EES90191.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|313131731|gb|EFR49348.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] Length = 346 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 101/227 (44%), Gaps = 43/227 (18%) Query: 25 TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------------------- 63 T NP+V LI+ +G ++ G PHAEV AL+EA Sbjct: 22 TLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKEAYFNLTQDSNILPLEQSIQIH 81 Query: 64 ---GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 ++A AT YVTLEPC H G++P CA + GI+++++ DP+ + G G Sbjct: 82 EYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESLGIKKLIIGTKDPNPKAQG-GA 140 Query: 117 QWLSQKGIIVDRMMESE--------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 ++L Q+G + + E++ L + + Q +K + I K A + I Sbjct: 141 EYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQ-KKGNFILFKYACRLNGSINGGQ 199 Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 S F+ H LR + D +++ +VL D+P L R N LQ Sbjct: 200 ISSKETQIFM-----HNLRCKLDELVISGKSVLIDNPILDSRFNSLQ 241 >gi|325126599|gb|ADY85929.1| RibD protein [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 107 Score = 79.3 bits (194), Expect = 8e-13, Method: Composition-based stats. Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ +T YVTLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+ Sbjct: 4 EQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGL 63 Query: 125 IVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 V ++ E Y ++TLK A++ D+M+ Sbjct: 64 EVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLA 105 >gi|254459001|ref|ZP_05072424.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium GD 1] gi|207084272|gb|EDZ61561.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium GD 1] Length = 336 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 102/236 (43%), Gaps = 38/236 (16%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 SSF F++ AL+ + + GLT NP+V C IV ++ G PHAEV AL Sbjct: 5 SSF---FINLALKEAWKYQGLTYPNPAVGCTIVSPKNELLSVEAHKKSGLPHAEVMALRT 61 Query: 63 AGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIEC 95 A + R + Y TLEPCSH G++P CA I Sbjct: 62 AYFKLTNDSKILELTSSSEIHTFLLNNHNNCFRDISLYTTLEPCSHIGKTPSCASLISAL 121 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 GI++V V +D + SG G + L + G+ V + + L A + E + + K Sbjct: 122 GIKKVFVGFNDINEEASG-GTEILKKSGVDVQSSILEKKAYDLIAPFNKWKEDK-FVFFK 179 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 A + G G+ I+ S+ VH +R D +++G TV D P L RL Sbjct: 180 WA---QRLNGSTDAGT--ISSIESRINVHKMRNVCDLLVIGGNTVREDRPTLDARL 230 >gi|322371685|ref|ZP_08046228.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus paucihalophilus DX253] gi|320548570|gb|EFW90241.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus paucihalophilus DX253] Length = 210 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 98/189 (51%), Gaps = 8/189 (4%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A+S D + V I+G ++V LR +SDAI+VG+GTVLADDP LT Sbjct: 2 HVVVNAAMSADGKLSSRQREQVAISGADDFDRVDDLRVESDAIVVGVGTVLADDPSLTAD 61 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 + +P+R++ D + LD++++ ++ V E+ A R+ +++ Sbjct: 62 ----EGVNPVRVVADSKARTPLDARVLDDR-ADTLVFVAESAPNRNVRALREAGADVVVA 116 Query: 271 -DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 + R L + + L RG ++VEGG + S + LVD + LY +VIG P+ Sbjct: 117 GNGRVALGQAFSELESRGTKRVMVEGGGELIFSLFDGGLVDELRLYVGSVVIGGRDAPTL 176 Query: 329 LE-EGYLEK 336 + +G++E+ Sbjct: 177 ADGDGFVER 185 >gi|289807868|ref|ZP_06538497.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 111 Score = 79.0 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 44/87 (50%), Positives = 59/87 (67%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG + Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFII 93 A+GATAYVTLEPCSH+GR+PPC +I Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALI 89 >gi|299142094|ref|ZP_07035228.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298576556|gb|EFI48428.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 122 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 4/114 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 6 YMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEK 65 Query: 70 ----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q + Sbjct: 66 LLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRM 119 >gi|84489977|ref|YP_448209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera stadtmanae DSM 3091] gi|84373296|gb|ABC57566.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera stadtmanae DSM 3091] Length = 215 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 60/194 (30%), Positives = 100/194 (51%), Gaps = 16/194 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + ++ L A++ D I S+ I+G +VH LR + D I+VGI TVL D+P+LT Sbjct: 2 KPYVLLNSAMTVDGKIATNN-SSMKISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLT 60 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 ++N + +P RII+D ++ LDSK++ A I++ + ++ K+ N+ Sbjct: 61 IHKINCKKSENPTRIIVDSSARIPLDSKVLNDD--AKTIVIVSSKANKASVELLKEKCNV 118 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I C + +LK L L G+ S+L+EGG+ + S +L+D + I IG Sbjct: 119 IICGSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEV-----SICIG---- 169 Query: 326 PSPLEEGYLEKNFM 339 S + GY K F+ Sbjct: 170 -SKILGGYDSKTFV 182 >gi|269796889|ref|YP_003316344.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM 10542] gi|269099074|gb|ACZ23510.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM 10542] Length = 372 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 94/326 (28%), Positives = 129/326 (39%), Gaps = 46/326 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 MS AL +R S P C+++ DG V+G T HA QAL EAG A+G Sbjct: 23 MSRALELAREDRLAASLGPRGGCVLLGADGTVLGEARTDRVARVHATAQALAEAGHRAQG 82 Query: 70 ATAYVTLEPC------SHYGRSP----PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ATA VTLEPC G SP PCAQ +++ G+RRVVV DPD SG Sbjct: 83 ATAVVTLEPCCLGGDARATGPSPLPHGPCAQALVDAGVRRVVVAHLDPDPGTSG------ 136 Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G + R E A + T + + + + G + Sbjct: 137 ---GAALLRGAGVEVVAASAAAADEALSLNRAWTFGVQAGRPLVTWVVEGGG---SAGGP 190 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + LRAQ D ++V VLA D L G H R L Sbjct: 191 NPDLDRLRAQVDTLVVSTWAVLAHDVSLAAL--GPDGHPAARQPLR-------------- 234 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V++ T DP L + F + + RD L + G +L+ GG A+A Sbjct: 235 -----VVVGTRELDPGLPI-FDGPGRTLHFA-TRDPALTLAAIYDLGGRHVLLSGGTALA 287 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI 325 F+ + LVD II + + +GG+ Sbjct: 288 AEFLRAGLVDEIISHVTPEWTSQGGV 313 >gi|34558827|gb|AAQ75171.1| riboflavin biosynthesis protein [Alvinella pompejana epibiont 7G3] Length = 335 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/235 (29%), Positives = 103/235 (43%), Gaps = 36/235 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ + + +T NP+V L+ +G V+ G HAEV L A EE Sbjct: 4 DDIFMRVAIDRAWEYQLITYPNPAVGALVELNGRVLAVEAHREAGTSHAEVLVLLRAYEE 63 Query: 67 -----------------------ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 RG + YVTLEPCSH G++P CA + + +R Sbjct: 64 LSNRKIEFNRLDANLAHNFLLSLPRGFFSNCSIYVTLEPCSHTGKTPSCATLLSKLKPKR 123 Query: 100 VVVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 VVV DP SG G++ L S + ++E E + + ++ Q KR+ + KIA Sbjct: 124 VVVGTLDPISSHSG-GVELLKSVGVEVEVGVLEREAEELIEPFIIWQ--KRAFVIFKIAQ 180 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 + + IG S S +H +R++ +++G TV D P L CR G Sbjct: 181 TSNGRIGGGYLSSKE-----SLTHLHKIRSKLSWLIIGGNTVRVDRPTLDCRFIG 230 >gi|169844953|ref|XP_001829197.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130] gi|116509937|gb|EAU92832.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130] Length = 239 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/209 (30%), Positives = 105/209 (50%), Gaps = 28/209 (13%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FLH L+R +K +TL A S D I + ++ S H LR+ DAILVG Sbjct: 3 FLH--LSRSSDKLD-LTLTFAQSLDAKIAGQNGSQIALSCSESMQMTHRLRSLHDAILVG 59 Query: 197 IGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL----LAPVIIVTEN 251 T + D+P+L RL +++ +P IILD + +L + K+++ + P ++ + Sbjct: 60 ANTAINDNPQLNTRLLPVEDQKNPRPIILDTNLRLGPNCKLLQNYASGRGVQPWLLTPGS 119 Query: 252 DDPVLALAFRKKNIN-------IIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 DDP ++K++ +IY D+ +L L G+ SL+VEGGAAV Sbjct: 120 DDPDW---LKRKSLLEDAGARIVIYAPSGGPRADDVPSILASLSTNGIRSLMVEGGAAVI 176 Query: 300 HSFINS-----RLVDSIILYRSQIVIGEG 323 SF+ + R++D +I+ + + +GEG Sbjct: 177 QSFVTAHLKYGRIIDRVIITVAPVFVGEG 205 >gi|239621600|ref|ZP_04664631.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515475|gb|EEQ55342.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 320 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 9/142 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66 +M+ AL + G + NP V ++V+D ++ G PHAE A + A E + Sbjct: 39 YMTQALELAHRGAGWVNPNPLVGTVVVRDSEILAAGYHDRYRGPHAERMAFDYADEHGID 98 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ + Sbjct: 99 MHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEETGVEV 158 Query: 126 VDRMMESE----GKIFLHAYLT 143 V +M +E + F H Y+T Sbjct: 159 VYDVMRAECDAINRHFFH-YIT 179 >gi|255322011|ref|ZP_05363161.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277] gi|255301115|gb|EET80382.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277] Length = 371 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L+ G+ +GA AYVTLEPC+H G++PPCA+ + VV+ D + SG G L Sbjct: 106 LQNHGDLLKGAKAYVTLEPCAHRGKTPPCAELLSRLKFAEVVIARGDENTVASG-GANIL 164 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI V ++ E + +L Q S L ++ N + + + I+ Sbjct: 165 KSSGISVKFDVLRREADELVEPFLAWQSGNFSFFKLALSA---NGVAVGTAQNKIISNLA 221 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 S+ H LR+ ++ +++G TV AD P L RL Sbjct: 222 SRTHSHRLRSAAELLVIGGATVRADRPRLDTRL 254 >gi|134054726|emb|CAK43566.1| unnamed protein product [Aspergillus niger] Length = 275 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 74/267 (27%), Positives = 116/267 (43%), Gaps = 49/267 (18%) Query: 130 MESEGKIFLHAYLTRQVEKRSH------ITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ + FL +L + S TL A S D+ + ++ ++G SK Sbjct: 6 FPTQDRAFLEPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMT 65 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-------PMRIILDP--HFKLSLDS 234 H LR++ DAIL+G+GT +AD+P L CRL G+ + P II+DP ++ + S Sbjct: 66 HYLRSRHDAILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHS 125 Query: 235 KIIKTAL----LAPVIIVTENDDP----------------VLALAFRKKNINIIYCDCRD 274 KI + A AP II P L + + I D Sbjct: 126 KIFELARNGRGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRI-----D 180 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSP 328 LL LV G+ S+++EGG ++ +S + LVDS+I+ + +G+GG+ P Sbjct: 181 WTALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRR 240 Query: 329 LEEGYL---EKNFMCVRRDYFGSDVCL 352 EG + V+ FG DV L Sbjct: 241 RVEGGMVVPASRLTGVKWYPFGEDVVL 267 >gi|242309140|ref|ZP_04808295.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT 98-5489] gi|239524181|gb|EEQ64047.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT 98-5489] Length = 343 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/254 (27%), Positives = 110/254 (43%), Gaps = 48/254 (18%) Query: 25 TSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-------------------- 63 T NP+V A ++ K+G ++ G PHAEV AL+ A Sbjct: 21 TLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNAYFHLTQDSAILSLQESHQIH 80 Query: 64 ---GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + A+ +T Y TLEPC H G++P CA I GI+ +VV DP+ + G G Sbjct: 81 QYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLGIKNLVVAAKDPNPKAQG-GA 139 Query: 117 QWLSQKGIIVDRMMES--------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 ++L+ I V ++ E + + L + Q +K S + K A D I Sbjct: 140 EYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQ-KKGSFVLFKYACRLDGSIDGGQ 198 Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228 S F+ H LR++ + +++ T+L D+P L R L+ +P I + Sbjct: 199 ISSKETQIFM-----HNLRSKLNNLIISGKTILLDNPTLDSRFCSLENKNPPNITI---- 249 Query: 229 KLSLDSKIIKTALL 242 L+ +S +TA L Sbjct: 250 -LTKNSNFPQTAPL 262 >gi|110668419|ref|YP_658230.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum walsbyi DSM 16790] gi|109626166|emb|CAJ52622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum walsbyi DSM 16790] Length = 229 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 12/187 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A+S D + V I+G +V LRA +DAILVGIGTVLADDP L Sbjct: 2 HVVVNAAISIDGKLSTRRREQVAISGERDFERVSELRANNDAILVGIGTVLADDPHLVVE 61 Query: 211 LNGLQEH-------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV---LALAF 260 + + +P RII+D + D++++ AP I+ P L Sbjct: 62 GSYRKRRQDQGLIPTPHRIIIDSRARTPTDAEVLDDE--APTYIIVSESAPTSRQADLEV 119 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 N+ I D + L+ L G++S++VEGG + S + LVD + +Y ++I Sbjct: 120 EGANVMIAGRDRVSMPAALSALADSGMSSIMVEGGGEIIFSLFEANLVDELSVYVGSMLI 179 Query: 321 GEGGIPS 327 G P+ Sbjct: 180 GGRDAPT 186 >gi|320585803|gb|EFW98482.1| riboflavin biosynthesis protein [Grosmannia clavigera kw1407] Length = 281 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 61/214 (28%), Positives = 102/214 (47%), Gaps = 34/214 (15%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 V ++ +TL A S D+ + +A ++G SK H LR++ DAI VG+GT +ADDP Sbjct: 28 VGQKPFVTLTFATSLDSSLSLAPGVRTALSGPQSKAMTHYLRSRHDAICVGVGTAVADDP 87 Query: 206 ELTCRL-------NGLQEHSPMRIILDPH--FKLSLDSKIIKTAL----LAPVII--VTE 250 L CR+ + H P I++DPH + L+ +S+++ TA LAP I+ V + Sbjct: 88 GLNCRIADDTDGAASVSAHQPRPIVIDPHDRWPLAHESRVLATARRGQGLAPYIVTAVQQ 147 Query: 251 NDDPVLALAFRKKNINIIY----------------CDCRDLKKLLTILVGRGVTSLLVEG 294 D L II D +L + G+ S+++EG Sbjct: 148 PDAAKQKLLESHGGKYIILSTVHGSAATATAPPEPSDRFRWDDVLDSVASHGLRSIMIEG 207 Query: 295 GAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 G + ++ + N+ LV S+I+ + + +G GG+ Sbjct: 208 GGNIINTLLEPTNTHLVRSVIVTIAPVWLGRGGV 241 >gi|157164068|ref|YP_001466380.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826] gi|112801624|gb|EAT98968.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826] Length = 353 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/145 (36%), Positives = 77/145 (53%), Gaps = 9/145 (6%) Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + + AYVTLEPCSH+G++PPCA + E G V++ D + SG G L G+ V Sbjct: 110 KNSKAYVTLEPCSHHGKTPPCANLLKELGFSDVIIGSHDENKIASGGG-NLLQSAGVNVK 168 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ L +L Q S LKIA+S++ G+A G IT +S+ VH L Sbjct: 169 FGILKERCDKLLEPFLAYQNGGFSF--LKIALSKN---GVASGGI--ITNELSRTHVHKL 221 Query: 187 RAQSDAILVGIGTVLADDPELTCRL 211 R+ D +++G TV D P L RL Sbjct: 222 RSVIDTLVIGGNTVRTDRPRLDTRL 246 >gi|317025956|ref|XP_001388634.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus niger CBS 513.88] Length = 337 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 74/265 (27%), Positives = 116/265 (43%), Gaps = 49/265 (18%) Query: 132 SEGKIFLHAYLTRQVEKRSH------ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + FL +L + S TL A S D+ + ++ ++G SK H Sbjct: 70 TQDRAFLEPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHY 129 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKI 236 LR++ DAIL+G+GT +AD+P L CRL G+ + P II+DP ++ + SKI Sbjct: 130 LRSRHDAILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKI 189 Query: 237 IKTAL----LAPVIIVTENDDP----------------VLALAFRKKNINIIYCDCRDLK 276 + A AP II P L + + I D Sbjct: 190 FELARNGRGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRI-----DWT 244 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLE 330 LL LV G+ S+++EGG ++ +S + LVDS+I+ + +G+GG+ P Sbjct: 245 ALLECLVREGLRSVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRV 304 Query: 331 EGYL---EKNFMCVRRDYFGSDVCL 352 EG + V+ FG DV L Sbjct: 305 EGGMVVPASRLTGVKWYPFGEDVVL 329 >gi|159905708|ref|YP_001549370.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C6] gi|159887201|gb|ABX02138.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C6] Length = 360 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/303 (25%), Positives = 145/303 (47%), Gaps = 43/303 (14%) Query: 88 CAQFIIECGIRRVVVCVD-DPDVRVSGRG-LQWLSQKGIIVDRMMESEGKIF-------- 137 A +I I V++ D D RV + ++ +GI V+ ++ E + Sbjct: 58 IADDLIARNISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSRGDLKDI 117 Query: 138 --LHAYLTRQVE---KRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHL 185 L+ Y++R++ S I L +S +GM G + I+G +VH Sbjct: 118 ESLYPYISRRININSDLSDIMLPYVISN---VGMTLDGKLATIENDSRISGENDLKRVHE 174 Query: 186 LRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTA 240 +R DAI+VGIGTVL DDP LT ++N + +P+RI++D + K+ L+++++ KT Sbjct: 175 IRKDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVIDSNLKIPLNARVLNNDAKTV 234 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAV 298 + I E ++ + L ++ I ++ + DL+K++ + G+ +L+EGG + Sbjct: 235 IATTTPISYEKEEKIRKL--KEMGIMVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTL 292 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNF-MCVR---RDYFGSD--VC 351 L++ + +Y + + G P+ ++ EG+ KN C + + Y+ D + Sbjct: 293 NWGMFKENLINEVRVYIAPKIFGGSNSPTYVDGEGF--KNVEECTKLELKKYYPLDDGIV 350 Query: 352 LEY 354 LEY Sbjct: 351 LEY 353 >gi|269929210|ref|YP_003321531.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter thermophilus DSM 20745] gi|269788567|gb|ACZ40709.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter thermophilus DSM 20745] Length = 257 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 8/181 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R T+ A + D I S ++ S H LRA+ DAILVGIGTVLADDP LT Sbjct: 33 RPWATVAYAQTLDGRIATRSGDSRWVSCPDSLTFAHCLRAEHDAILVGIGTVLADDPRLT 92 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267 RL + SPMR+ILD +L LD+ +++ ++VT P L R + Sbjct: 93 TRL--VAGPSPMRVILDSRLRLPLDAAVLRDGAADQTLVVTTAQAPPERLDCIRDTGARV 150 Query: 268 IYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 I DL L G+ +LL+EGGA + + + +VD + + + ++G Sbjct: 151 IVATGHPGGGVDLADAFHQLRELGIRTLLIEGGARTITAALRAGVVDRLAVCIAPKILGA 210 Query: 323 G 323 G Sbjct: 211 G 211 >gi|303244611|ref|ZP_07330944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermococcus okinawensis IH1] gi|302485037|gb|EFL47968.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermococcus okinawensis IH1] Length = 225 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 51/168 (30%), Positives = 89/168 (52%), Gaps = 9/168 (5%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSL 232 I+G +VH +R D I+VGIGT+L DDP LT +++ +P+RI++D + ++ L Sbjct: 30 ISGEEDLKRVHNIRKNVDGIMVGIGTILKDDPRLTVHKIDAKIGDNPIRIVIDSNLRIPL 89 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRK----KNINIIYCDCR--DLKKLLTILVGRG 286 +++++ +I T D P K +N+ II +LKKL+ IL +G Sbjct: 90 NARVLNKDA-KTIIATTLKDTPNKIEKINKLKDMENVEIIRTGIEKVNLKKLMEILYKKG 148 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 + +L+EGG + LVD + +Y + + G G P+ ++ EG+ Sbjct: 149 IKKILLEGGGTLNWGMFKENLVDEVSVYVAPKIFGGVGAPTYVDGEGF 196 >gi|327292501|ref|XP_003230949.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892] gi|326466886|gb|EGD92339.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892] Length = 645 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G SK H LR++ DAI++G+GT LADDP L Sbjct: 381 KFPHVTLTYAQSMDGKISSKPGVQTVLSGPESKAMTHYLRSRHDAIIIGLGTALADDPGL 440 Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500 Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + K Y R+ + + L +G+ S+++EGG V +N Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560 Query: 307 ---LVDSIILYRSQIVIGEGGI 325 VDS+I+ + +G G+ Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582 >gi|154486847|ref|ZP_02028254.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis L2-32] gi|154084710|gb|EDN83755.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis L2-32] Length = 269 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 53/142 (37%), Positives = 72/142 (50%), Gaps = 9/142 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +M+ AL +R G NP V ++V G V+ G PHAE A + A G + Sbjct: 14 YMAQALELARKGAGWVDPNPLVGAVVVSGGEVLATGYHDRYRGPHAERMAFDYADAHGID 73 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ + Sbjct: 74 LTGATVIDTLEPCCHVGSQPACTDLILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEV 133 Query: 126 VDRMMESE----GKIFLHAYLT 143 V +M E + F H Y+T Sbjct: 134 VRDVMREECDAINRHFFH-YIT 154 >gi|326470312|gb|EGD94321.1| riboflavin-specific deaminase [Trichophyton tonsurans CBS 112818] Length = 648 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443 Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503 Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + K Y R+ + + L +G+ S+++EGG V +N Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563 Query: 307 ---LVDSIILYRSQIVIGEGGI 325 VDS+I+ + +G G+ Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGV 585 >gi|326481151|gb|EGE05161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Trichophyton equinum CBS 127.97] Length = 648 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443 Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503 Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + K Y R+ + + L +G+ S+++EGG V +N Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563 Query: 307 ---LVDSIILYRSQIVIGEGGI 325 VDS+I+ + +G G+ Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGV 585 >gi|134045275|ref|YP_001096761.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C5] gi|132662900|gb|ABO34546.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C5] Length = 360 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 21/236 (8%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLRAQS 190 L+ Y++R++ S ++ + + +GM G + I+G +VH +R Sbjct: 120 LYPYISRRITINSDLSDIMIPYVISNVGMTLDGKLATIENDSRISGENDLKRVHEIRKDV 179 Query: 191 DAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPV 245 DAI+VGIGTVL DDP LT ++N + +P+RI++D + K+ L+++++ KT + Sbjct: 180 DAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKVPLNARVLNKDAKTVIATTT 239 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I E ++ + L ++ I ++ + DL+K++ + G+ +L+EGG + Sbjct: 240 PISDEKEEKIRKL--KEMGIMVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMF 297 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYFGSD--VCLEY 354 L++ + +Y + V G P+ ++ + C + ++Y+ D + LEY Sbjct: 298 KENLINEVRVYIAPKVFGGANSPTYVDGKGFKNVEECTKLELKNYYPLDDGIVLEY 353 >gi|45358911|ref|NP_988468.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis S2] gi|45047777|emb|CAF30904.1| Conserved hypothetical protein [Methanococcus maripaludis S2] Length = 360 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/239 (25%), Positives = 118/239 (49%), Gaps = 27/239 (11%) Query: 138 LHAYLTRQVE---KRSHITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLR 187 L+ Y++R++ S I L +S +GM G + I+G +VH +R Sbjct: 120 LYPYISRRINFNSDLSDIMLPFVISN---VGMTLDGKLATIDNDSRISGENDLKRVHEIR 176 Query: 188 AQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALL 242 + DAI+VGIGTVL DDP LT ++N + +P+RI++D + K+ L ++++ KT + Sbjct: 177 KEVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLTARVLNKDAKTVIA 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I E ++ + L + I ++ + DL+K++ + G+ +L+EGG + Sbjct: 237 TTTPISDEKEEKIRKL--NEMGIIVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR---RDYFGSD--VCLEY 354 L++ + +Y + V G P+ ++ + C + ++Y+ D + LEY Sbjct: 295 GMFKENLINEVRVYIAPKVFGGASSPTYVDGNGFKNVEECTKLELKNYYPLDDGIVLEY 353 >gi|261350765|ref|ZP_05976182.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanobrevibacter smithii DSM 2374] gi|288860520|gb|EFC92818.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/223 (29%), Positives = 113/223 (50%), Gaps = 23/223 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + ++ L A++ D I GS I+G +VH LR + D I+VGI TV+AD+P LT Sbjct: 2 KPYVILNAAMTLDGKIATK-TGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND---DPVLA---LAFR 261 +++ E +P+R+++D + + ++I T A II ND D +++ F Sbjct: 61 VHKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLDFIVSDRYANFT 118 Query: 262 KKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K+ I+ + D R DLK L+ L G+ +L++EGG+ + S I L+D I + + V Sbjct: 119 KRGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFV 178 Query: 320 IG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +G +G ++EG + F + G D+ L+Y Sbjct: 179 VGGKDSHTLFDGEGFDTMDEGVRLELFDSFK---LGDDLILQY 218 >gi|327310583|ref|YP_004337480.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine [Thermoproteus uzoniensis 768-20] gi|326947062|gb|AEA12168.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine [Thermoproteus uzoniensis 768-20] Length = 217 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 94/178 (52%), Gaps = 8/178 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L AV+ D I + G ++ + ++H LRA+ DA+LVG GTV D+P LT Sbjct: 2 RPYVYLAAAVTVDGRIA-SKTGYSRLSCPVDLKRLHALRAKVDAVLVGAGTVKIDNPRLT 60 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267 R ++ +P+R+I+D + +++ ++ AP I++T P + A R++ + + Sbjct: 61 VRY--VEGRNPVRVIVDGSLSVPQSARVFDSS--APTIVLTTEKAPREKVAALRERGVEV 116 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I D L++ L L G+ S+LVEGG + ++ LVD +++ + G G Sbjct: 117 IQFPGDAVPLREALERLYASGIRSVLVEGGGRINWQMLSQCLVDELVITVTPYAFGAG 174 >gi|15605930|ref|NP_213307.1| riboflavin specific deaminase [Aquifex aeolicus VF5] gi|2983103|gb|AAC06708.1| riboflavin specific deaminase [Aquifex aeolicus VF5] Length = 224 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 11/180 (6%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H +RA+ D I+VG TV D+P LT R + +P+RII + LD+ ++ T Sbjct: 41 LHEIRAKVDGIMVGCETVRTDNPSLTVRY--AKGKNPVRIIPCSTANVPLDANVLNTKE- 97 Query: 243 APVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP II T P L K+ + ++ + D KLL L RG+ SL+VEGGA++ Sbjct: 98 APTIIATTERAPKERLEKIKELGAEVIVVGDELVDFDKLLPELYRRGIKSLMVEGGASIN 157 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMCVR-RDYF--GSDVCLEY 354 F+ R+VD I L +++G +P+ + EG+ + KN + +R R +F G + E+ Sbjct: 158 WEFVRRRVVDEIRLIHLPVIVGGENVPTLVGGEGFKKLKNLLHLRLRSHFVRGKQLITEW 217 >gi|330930301|ref|XP_003302977.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1] gi|311321324|gb|EFQ88912.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1] Length = 280 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/233 (27%), Positives = 109/233 (46%), Gaps = 29/233 (12%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + +TL A S D+ + +A ++G SK H LR++ DAIL+G GT AD+P L Sbjct: 39 KPFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRHDAILIGAGTATADNPSLN 98 Query: 209 CRLNGLQEH-------SPMRIILDPH--FKLSLDSKIIKTAL----LAPVII--VTENDD 253 CR+ G+ + P +++DPH ++ + +SK+++ A AP I+ + + D Sbjct: 99 CRIEGVGGYGSEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTCTSPSAD 158 Query: 254 PVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLVEGGAAVAHSFINS- 305 L ++ +D+ + +L L +G+ S+++EGG V + + Sbjct: 159 RRAILENVGGKFLLLGLSAKDVSQAGSSWHIILDALRQQGIQSVMIEGGGFVINDLLGPG 218 Query: 306 ---RLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 LVDS+I+ + +G+GG+ P E VR G DV L Sbjct: 219 PAYSLVDSVIVTIAPTWLGKGGVQVCPDGGSERLPVTRLQNVRWVPLGEDVVL 271 >gi|171690512|ref|XP_001910181.1| hypothetical protein [Podospora anserina S mat+] gi|170945204|emb|CAP71315.1| unnamed protein product [Podospora anserina S mat+] Length = 260 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 20/224 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + H+TL A S D + +A ++G SK+ H LR + +AILVG T L D+P L Sbjct: 30 KPHLTLTYATSLDASLSLAPGVRTTLSGPYSKSMTHYLRTRHNAILVGCTTALVDNPALN 89 Query: 209 CRLNGLQ--EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIV-----TENDDPV 255 RL + + P IILDP + + DS++I+ A P ++ T+ + Sbjct: 90 SRLGSITSLDQQPRPIILDPKGRWDFTEDSQVIRLAAEFKGKGPWVVTKRGGETKERGEL 149 Query: 256 LALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSI 311 L K + D R +L++L +GV S++VEGG V +S + +RLVDS+ Sbjct: 150 LERVGGKFLVLETGEDGRFKWGDVLSVLGEQGVRSVMVEGGGEVINSLLIDPENRLVDSV 209 Query: 312 ILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 I+ + +G+GG+ PS + + V G DV L Sbjct: 210 IITIAPTWLGKGGVVVSPSRQQGQTSQLKLRDVSWQPHGEDVVL 253 >gi|148642125|ref|YP_001272638.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanobrevibacter smithii ATCC 35061] gi|222444696|ref|ZP_03607211.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii DSM 2375] gi|148551142|gb|ABQ86270.1| riboflavin-specific deaminase [Methanobrevibacter smithii ATCC 35061] gi|222434261|gb|EEE41426.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii DSM 2375] Length = 223 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 111/223 (49%), Gaps = 23/223 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + ++ L A++ D I GS I+G +VH LR + D I+VGI TV+AD+P LT Sbjct: 2 KPYVILNAAMTLDGKIATK-TGSSNISGEKDLKRVHELRREVDGIMVGINTVIADNPRLT 60 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA------FR 261 +++ E +P+R+++D + + ++I T A II ND + + F Sbjct: 61 VHKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLEFIVSDRYANFT 118 Query: 262 KKNINIIYC-DCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K+ I+ + D R DLK L+ L G+ +L++EGG+ + S I L+D I + + V Sbjct: 119 KRGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFV 178 Query: 320 IG--------EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +G +G ++EG + F + G D+ L+Y Sbjct: 179 VGGKDSHTLFDGEGFDTMDEGVRLELFDSFK---LGDDLILQY 218 >gi|154173746|ref|YP_001408781.1| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92] gi|153793001|gb|EAT99582.2| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92] Length = 376 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 75/254 (29%), Positives = 106/254 (41%), Gaps = 56/254 (22%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59 D +M AL + LT NP+V C+I ++G ++ GC HAE A Sbjct: 3 DEFYMQLALNKAWEFQILTYPNPAVGCVITDRNGKILSCEAHKKAGCLHAEPMAVFFALC 62 Query: 60 ---------------------------LEEAGEEA---------------RGATAYVTLE 77 L+ A E +GA AYVTLE Sbjct: 63 ALSGEFLAKFLDAYGAKFSQNFSGLDELKSAELEPNFTYEFILAYHANLLKGAKAYVTLE 122 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCSH+GR+PPCA+ + VV+ D + SG G + L G+ V + + + Sbjct: 123 PCSHHGRTPPCAELLKRLNFGEVVIGARDENKIASG-GAEILKNSGVRVKFDVLKDKALE 181 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L A R + LKIA+S + G+A G I+G S+ VH LR+ D +++G Sbjct: 182 LIAPF-RAWHDGNFSFLKIALSAN---GVANGGV--ISGEQSRTHVHKLRSVIDLLVIGG 235 Query: 198 GTVLADDPELTCRL 211 TV D P L RL Sbjct: 236 NTVRTDRPRLDTRL 249 >gi|315040531|ref|XP_003169643.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893] gi|311346333|gb|EFR05536.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893] Length = 645 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 98/227 (43%), Gaps = 38/227 (16%) Query: 137 FLHAYLTRQVE--------------KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 FL YL + E K H+TL A S D I ++G +K Sbjct: 356 FLEPYLPKAGECQSNGNANPNSGEAKFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKTM 415 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLD 233 H LR++ DAI++G+GT +ADDP L CRL G P +I+DP + S D Sbjct: 416 THYLRSRHDAIIIGLGTAVADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAD 475 Query: 234 SKIIKTAL----LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTI 281 S+++ TA AP +IV+ + + K Y R+ + + Sbjct: 476 SRLLMTAAEGKGKAPWVIVSPGAELLPDKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGA 535 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 L +G+ S+++EGG V +N VDS+I+ + IG G+ Sbjct: 536 LANQGIRSVMIEGGGIVLSELLNPEYVDFVDSVIVTVAPTYIGRNGV 582 >gi|302507506|ref|XP_003015714.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma benhamiae CBS 112371] gi|291179282|gb|EFE35069.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma benhamiae CBS 112371] Length = 645 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTLLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 440 Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500 Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + K Y R+ + + L +G+ S+++EGG V +N Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560 Query: 307 ---LVDSIILYRSQIVIGEGGI 325 VDS+I+ + +G G+ Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582 >gi|302666117|ref|XP_003024661.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton verrucosum HKI 0517] gi|291188727|gb|EFE44050.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton verrucosum HKI 0517] Length = 645 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/202 (29%), Positives = 93/202 (46%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 381 KFPHVTLTYAQSMDGKISTKPGVQTLLSGPDTKAMTHYLRSRHDAIIIGLGTALADDPGL 440 Query: 208 TCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDP 254 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 441 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 500 Query: 255 VLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + K Y R+ + + L +G+ S+++EGG V +N Sbjct: 501 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVMIEGGGVVLSELLNPE 560 Query: 307 ---LVDSIILYRSQIVIGEGGI 325 VDS+I+ + +G G+ Sbjct: 561 YVDFVDSVIVTVAPTYVGRNGV 582 >gi|319789432|ref|YP_004151065.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermovibrio ammonificans HB-1] gi|317113934|gb|ADU96424.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermovibrio ammonificans HB-1] Length = 220 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 103/203 (50%), Gaps = 11/203 (5%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLAD 203 +R ++ + V+ D + +A G S I + + +H +RA+ D I+VG TV D Sbjct: 2 ERPYVLIVSEVTIDGKLTLAKGVSSKEIMKLMDDEANRYLHAVRAECDGIMVGANTVRID 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P LT R ++ +P+R+I + LD+ ++ T + +I V+E AF+++ Sbjct: 62 NPNLTVRY--VEGKNPIRVIPTSTGDIPLDANVLNTEVAPTIIAVSERAPKEKVEAFKER 119 Query: 264 NINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ ++ LL +L RG+ L+VEGG+AV I + LVD I L +++G Sbjct: 120 GAEVLVAGKEKIEFPLLLKLLKERGIEKLMVEGGSAVNWELIKNDLVDEIRLIHLPVIVG 179 Query: 322 EGGIPSPLE-EGYLEKNFMCVRR 343 +PS + EG+ K V+R Sbjct: 180 GDDVPSLVSGEGF--KTLSAVKR 200 >gi|262196785|ref|YP_003267994.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium ochraceum DSM 14365] gi|262080132|gb|ACY16101.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium ochraceum DSM 14365] Length = 319 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 104/212 (49%), Gaps = 15/212 (7%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ----VHLLRAQSDAILVGIGTVLADD 204 R + +A S D I A CG+ + +IS NQ H +RA DA+LVG TV+ DD Sbjct: 111 RPRVIAHLAQSLDGRIATA-CGT---SQWISGNQDLVHNHRMRALCDAVLVGAETVIHDD 166 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 P+LTCR ++ P R++LDP ++S + +I + +AP +++ N + AL Sbjct: 167 PQLTCR--EVEGAHPTRVVLDPRGRVSAERRIFQD-RVAPTVVIG-NQEGEHALPAHVTR 222 Query: 265 INIIYCDCRDLK-KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + + R +L L G+ L VEGG +F+ + L+D + + + ++IG G Sbjct: 223 LQVGTPGARIAPGDILDALAVHGIHRLFVEGGGLTVSAFLQAGLLDRLQITVAPMIIGSG 282 Query: 324 GIPSPLEE-GYLEKNFMC-VRRDYFGSDVCLE 353 L + LE VRR F +DV E Sbjct: 283 RASISLPDIDSLEHALRPEVRRFVFDTDVMFE 314 >gi|217076038|gb|ACJ86378.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc mesenteroides] Length = 135 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 59/113 (52%), Gaps = 2/113 (1%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 T NP +IVKDG VI G G HAE+ A + GAT YVTLEPCS + Sbjct: 22 TFENPRGGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTLEPCSTH 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 G+ CA I G++RVVV DP+ + +G++ L GI VD + E K Sbjct: 82 GKVGSCAVQIQNWGLKRVVVGSIDPNPSTNAKGIKMLGSPGISVDVLNTYENK 134 >gi|126465369|ref|YP_001040478.1| deaminase-reductase domain-containing protein [Staphylothermus marinus F1] gi|126014192|gb|ABN69570.1| bifunctional deaminase-reductase domain protein [Staphylothermus marinus F1] Length = 227 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 52/175 (29%), Positives = 89/175 (50%), Gaps = 13/175 (7%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 ++H R+ DA++VG TV+ DDP LT RL G + P RI++D +++ K+ T Sbjct: 37 RLHYFRSIVDAVMVGANTVIIDDPLLTIRLPGYKGKQPYRIVIDGKLRVTPKYKVFNTK- 95 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLL 291 AP I++T N D + F K + +++ D DL+K + L + +L Sbjct: 96 YAPTILITSISNKDREIIKRFTSKGVKVLFIDTDKNDPSKLDLRKAVEKLYREFYIRKIL 155 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 +EGG + S + ++L+D + L S ++IG + L E +LE V ++ F Sbjct: 156 IEGGGQLLASLLKNKLIDELYLSISPLIIGLNK--TSLIEDFLESPLKLVLKNIF 208 >gi|302423090|ref|XP_003009375.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium albo-atrum VaMs.102] gi|261352521|gb|EEY14949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium albo-atrum VaMs.102] Length = 203 Score = 76.3 bits (186), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 95/193 (49%), Gaps = 24/193 (12%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDP--HFKLSLDSKIIKTA 240 H LR++ DAI VG+GTV+ADDP L CR+ G+ + P II+DP +++S SK+++ A Sbjct: 3 HYLRSRHDAICVGVGTVVADDPALNCRIEGVGLKKQPRPIIIDPSCRWEVSARSKVLEVA 62 Query: 241 L----LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRGVT 288 LAP +I + D DP + I + +L L G+ Sbjct: 63 RAGLGLAPYVITSRWDVDPARRGLLEQHGGKFITVQMDAAGSGRFAWRDILAALHREGLG 122 Query: 289 SLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI---PSPLEE---GYLEKNFM 339 S+++EGG V +S + + LVDS+I+ + +G+GG+ P +E+ Sbjct: 123 SVMIEGGGQVINSLLAPTSHHLVDSVIVTIAPTWLGQGGVVVSPERVEQNGTAISAARLS 182 Query: 340 CVRRDYFGSDVCL 352 V FG DV L Sbjct: 183 HVSWHPFGEDVVL 195 >gi|288931633|ref|YP_003435693.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Ferroglobus placidus DSM 10642] gi|288893881|gb|ADC65418.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Ferroglobus placidus DSM 10642] Length = 225 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 91/187 (48%), Gaps = 8/187 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + + + +A S D I + I+ +V LRA+SDAI+VGIGTVLAD+P+LT Sbjct: 2 KPFVFVNVAASVDGKISNERRVQLRISSKEDMERVDKLRAESDAIMVGIGTVLADNPKLT 61 Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + + L++ +P+R+++D ++ D+ I+ + + + D L Sbjct: 62 VKSDELRKKRVLEGKPENPLRVVVDSKARIPEDALILNDEAETLLAVSKKADLEKLKKLQ 121 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K I + + DL +L+ L GV L+VEGG + S LVD I +Y ++I Sbjct: 122 EKAMIFVAGEERVDLSELMEFLYHIGVRKLMVEGGGELIASLFREGLVDEIYVYYGNVII 181 Query: 321 GEGGIPS 327 P+ Sbjct: 182 AGKNSPT 188 >gi|121712499|ref|XP_001273861.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus clavatus NRRL 1] gi|119402013|gb|EAW12435.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus clavatus NRRL 1] Length = 279 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 32/223 (14%) Query: 135 KIFLHAYLTRQ------VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + FL +L Q + TL A S D+ + ++ ++G SK H LR+ Sbjct: 17 RAFLEPHLPPQNATFSTTKTLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHFLRS 76 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDP--HFKLSLDSKIIKT 239 + DAIL+G+GT +ADDP L CR+ G+ + P II+DP + + SKI+ Sbjct: 77 RHDAILIGVGTAVADDPGLNCRIQGVGGYGADGLQGQPRPIIIDPSCRWDFTESSKILSL 136 Query: 240 AL----LAPVIIVTENDDPVLALAFRKKN-INIIYCDC---------RDLKKLLTILVGR 285 P II P A +++ I D D +L L Sbjct: 137 VREGRGRGPFIITGVQSPPSERKALLERHGGKFITLDAMTTAAGEHRMDWSVVLECLKTE 196 Query: 286 GVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 G+ S++VEGG + +S ++ L+DS+I+ + +G+GG+ Sbjct: 197 GLGSVMVEGGGTIINSLLDPSSQHLIDSVIVTIAPTWLGQGGV 239 >gi|190346556|gb|EDK38668.2| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC 6260] Length = 281 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 97/199 (48%), Gaps = 22/199 (11%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 K+ +TL A S D+ I A I+G +K+ H +R++ DAI+VGIGTVLADDP+ Sbjct: 56 HKKPFVTLTYAQSLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDPK 115 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLS---------LDSKIIKTALLAPVIIV-------TE 250 L CR + SP ++LDP K +D LAP IIV T+ Sbjct: 116 LNCRHEAGK--SPRPVVLDPSGKWDYKSSQLHQLVDQNTDDIKALAPYIIVRDDVDIDTK 173 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR---- 306 N+ V + +++ ++ + L ++S+++EGGA + + ++ + Sbjct: 174 NEKEVSRQGGKYIRLSLSRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLSFQKTEA 233 Query: 307 LVDSIILYRSQIVIGEGGI 325 + S+I+ + +GE G+ Sbjct: 234 FIHSLIITIGPVYLGEQGV 252 >gi|299142759|ref|ZP_07035888.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298575788|gb|EFI47665.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 116 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 45/111 (40%), Positives = 56/111 (50%), Gaps = 4/111 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 6 YMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPEDEK 65 Query: 70 ----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+ Sbjct: 66 LLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGI 116 >gi|146418142|ref|XP_001485037.1| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC 6260] Length = 281 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 22/199 (11%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 K+ +TL A D+ I A I+G +K+ H +R++ DAI+VGIGTVLADDP+ Sbjct: 56 HKKPFVTLTYAQLLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDPK 115 Query: 207 LTCRLNGLQEHSPMRIILDP----HFKLS-----LDSKIIKTALLAPVIIV-------TE 250 L CR + SP ++LDP +KLS +D LAP IIV T+ Sbjct: 116 LNCRHEAGK--SPRPVVLDPSGKWDYKLSQLHQLVDQNTDDIKALAPYIIVRDDVDIDTK 173 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSR 306 N+ V + ++++ ++ + L ++S+++EGGA + + + Sbjct: 174 NEKEVSRQGGKYIRLSLLRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLLFQKTEA 233 Query: 307 LVDSIILYRSQIVIGEGGI 325 + S+I+ + +GE G+ Sbjct: 234 FIHSLIITIGPVYLGEQGV 252 >gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125 [Chlorella variabilis] Length = 697 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 95/383 (24%), Positives = 150/383 (39%), Gaps = 48/383 (12%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D R + A S+ +G T +P C++V G P AE + Sbjct: 12 AAKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLVSSE-----------GVPLAEASQWAQQ 60 Query: 64 GEEA-------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 G EA G TAY+ LE C + G+ RVVV + P Sbjct: 61 GTEAPECAAARQAGGAAAGGTAYLNLE-CGDCHGDRAAVDALAGAGVARVVVGMRHPLPH 119 Query: 111 VSGRGLQWLSQKGIIVDRMMES---------EGKIFL-------HAYLTRQVEKRSHITL 154 + G L L G+ V + E+ E + L A L R V KR L Sbjct: 120 LRGTALAQLRAAGLRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLL 179 Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K A++ D I S ++ S+ +V RA+SDA++VG TV D+P+LT R G Sbjct: 180 KYAMTLDGKIATHTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREG- 238 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 H PMRI++ L ++K+ + V+ A R++ + ++ D Sbjct: 239 -GHQPMRIVMSRTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLT 297 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GY 333 + RG L E G +A I + + + + + +IG P+P+ + G+ Sbjct: 298 PDAVARYCYDRGFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGF 357 Query: 334 LEKN----FMCVRRDYFGSDVCL 352 +E VR G D+ L Sbjct: 358 VEMTQALPLSEVRWQQVGPDLML 380 >gi|15668852|ref|NP_247655.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanocaldococcus jannaschii DSM 2661] gi|2493563|sp|Q58085|RIB7_METJA RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1591385|gb|AAB98665.1| riboflavin-specific deaminase (ribG) [Methanocaldococcus jannaschii DSM 2661] Length = 224 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 18/163 (11%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +RA D I+VGIGTVL DDP LT + +P+RI++D ++ L+++++ Sbjct: 40 RVHKIRANVDGIMVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKD- 97 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII------YCDCR----DLKKLLTILVGRGVTSLL 291 A II T D ++K I I+ C DLKKL+ IL +G+ S+L Sbjct: 98 -AKTIIATTED----TNEEKEKKIKILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSIL 152 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 +EGG + LVD + +Y + + G P+ ++ EG+ Sbjct: 153 LEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGF 195 >gi|289192977|ref|YP_003458918.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus sp. FS406-22] gi|288939427|gb|ADC70182.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus sp. FS406-22] Length = 220 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 84/158 (53%), Gaps = 8/158 (5%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +RA D I+VGIGTVL D+P LT + +P+RI++D ++ L+++++ Sbjct: 36 RVHKIRANVDGIMVGIGTVLKDNPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKDA 94 Query: 242 LAPVIIVTENDDPVLALAFR---KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGA 296 +I TE+ D + I ++ C DLKKL+ IL +G+ S+L+EGG Sbjct: 95 -KTIIATTEDGDEEKEKKIKILEDMGIEVVKCGRGKVDLKKLMEILYDKGIKSILLEGGG 153 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 + LVD + +Y + + G P+ ++ EG+ Sbjct: 154 TLNWGMFKEGLVDEVSVYIAPKIFGGKDTPTYVDGEGF 191 >gi|169607048|ref|XP_001796944.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15] gi|111065288|gb|EAT86408.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15] Length = 255 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 91/174 (52%), Gaps = 23/174 (13%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHSPMRIILDP 226 ++G SK H LR++ DAIL+G GT +ADDP L CR++ E P +++DP Sbjct: 65 LSGPQSKAMTHYLRSRHDAILIGCGTAIADDPSLNCRIDGVGGYGGAGLEGQPRPVVVDP 124 Query: 227 H--FKLSLDSKIIKTA----------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 + + +S SK++K A + A I E V ++ + ++ D Sbjct: 125 NGRWDVSDASKVVKLAREGRGKGVWVVSAKGSISEEKKVVVESVGGEAFELEVVEGKM-D 183 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 KK+L +L G+ S+++EGG AV + + N LVDS+I+ + + +G+GG+ Sbjct: 184 WKKILNVLAKEGIRSVMIEGGGAVINGLLSKENMGLVDSVIVTIAPVWLGKGGV 237 >gi|289582726|ref|YP_003481192.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Natrialba magadii ATCC 43099] gi|289532279|gb|ADD06630.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Natrialba magadii ATCC 43099] Length = 220 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 55/199 (27%), Positives = 100/199 (50%), Gaps = 14/199 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A+S D + + I+G ++V LRA SDA++VG+GTVLADDP LT + Sbjct: 2 HVVVNAAMSADGKLSSRRREQIAISGDADFDRVDRLRADSDAVVVGVGTVLADDPHLTVK 61 Query: 211 LNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 L++ +P R+++D + ++++ A A + + PV A Sbjct: 62 DENLRDERRTNGKPANPARVVVDSSARTPSSAEVLDDA--ATTYVCVSDAAPVEQRAALA 119 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ ++I + DL + L +G+ ++VEGG + S + LVD + ++ VI Sbjct: 120 EHADLITAGEERVDLLRAFAALQEQGIERVMVEGGGELIFSLFEAGLVDDLSVFVGPKVI 179 Query: 321 GEGGIPSPLE-EGYLEKNF 338 G P+ + +G++E NF Sbjct: 180 GGRDAPTLADGDGFVE-NF 197 >gi|300711247|ref|YP_003737061.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus jeotgali B3] gi|299124930|gb|ADJ15269.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus jeotgali B3] Length = 218 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT-- 208 + + A S D + + I+G ++V LRA+SDA++VG+GTVLADDP LT Sbjct: 2 DVVVNAATSADGKLSNRRREQIAISGPDDFDRVDDLRAESDAVMVGVGTVLADDPHLTVD 61 Query: 209 -----CRLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLALA 259 R + P R++ D + D++I+ +T LL TE V L Sbjct: 62 ESTSAVRTERGEPPQPARVVADSRARTPPDARILDGVARTYLLVSEAAPTER---VERLE 118 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + + + D DL+ L G+ LLVEGG + S + LVD + ++ + Sbjct: 119 AQDARVITVGDDRVDLEDGFETLATEGIDRLLVEGGGELIFSLFEADLVDELSVFVGPTI 178 Query: 320 IGEGGIPSPLE-----EGYLEKNFMCVRR 343 IG P+ + EG+ E + V R Sbjct: 179 IGGREAPTLADGDGFVEGFPELSLESVER 207 >gi|126459735|ref|YP_001056013.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum calidifontis JCM 11548] gi|126249456|gb|ABO08547.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Pyrobaculum calidifontis JCM 11548] Length = 217 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 96/195 (49%), Gaps = 11/195 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A + D I A G ++ I ++H LRA+ DA++VG T + D+P LT Sbjct: 2 RPYVYLAAATTLDGRIASA-TGYSRLSCPIDLRRLHELRARVDAVIVGANTAIVDNPRLT 60 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINI 267 R ++ +PMR+++D K+ ++ + AP ++ T P + R + + + Sbjct: 61 VRY--VEGRNPMRVLIDGALKVPTSLRMFDNS--APTLVFTTAKAPAEKIVELRARGVEV 116 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 D D +L+ L RGV +L+EGG F++ LVD ++L + + G G Sbjct: 117 YVADGEKVDPAWVLSTLYQRGVRKVLLEGGGRTNWEFLHRCLVDEVVLTITPYIFGRG-- 174 Query: 326 PSPLE-EGYLEKNFM 339 S +E EGY K M Sbjct: 175 VSLVEGEGYPTKEDM 189 >gi|289619581|emb|CBI53864.1| unnamed protein product [Sordaria macrospora] Length = 302 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 30/208 (14%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K+ +TL A S D+ + +A ++G SK H LR++ AILVG+GT +ADDP L Sbjct: 55 KKPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRSRHAAILVGVGTAVADDPGL 114 Query: 208 TCRL-------NGLQEHSPMR---IILDP--HFKLSLDSKIIKTAL----LAPVIIVT-- 249 C++ G++E P + IILDP ++++ SK+I+ A L P I V Sbjct: 115 NCKILSPFVAEAGVREQHPNQPRPIILDPSARWEVNEQSKVIQLARLGQGLGPFIFVAKE 174 Query: 250 ------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E V ++ + ++ + + +L + G+ S+++EGG +V +S + Sbjct: 175 VSSVSEERRAVVESVGGKFVHVKSVEGEGFAWADVLRAIKKEGLDSVMIEGGGSVINSLL 234 Query: 304 N------SRLVDSIILYRSQIVIGEGGI 325 LVDS+I+ + +G GG+ Sbjct: 235 TLEQGGEQELVDSVIVTIAPTWLGAGGV 262 >gi|303280045|ref|XP_003059315.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459151|gb|EEH56447.1| predicted protein [Micromonas pusilla CCMP1545] Length = 146 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 64/145 (44%), Positives = 86/145 (59%), Gaps = 2/145 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G T NP V C++V D + G G PHAEV AL AG+ Sbjct: 1 DKAYMRRALELAATATGQTHPNPLVGCVVVNDDGDVVGEGYHPKAGEPHAEVFALRAAGD 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYV+LEPC H+GR+PPC++ +++ G+RRVVV DPD RVSG G++ L GI Sbjct: 61 AARGATAYVSLEPCDHFGRTPPCSRALVDAGVRRVVVGFVDPDPRVSGGGIRTLLDAGIE 120 Query: 126 VDRMMESEGKIFLHA-YLTRQVEKR 149 V E ++A ++ R +KR Sbjct: 121 VTVGCEEAACREINADFIARNTKKR 145 >gi|304314445|ref|YP_003849592.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermobacter marburgensis str. Marburg] gi|302587904|gb|ADL58279.1| predicted 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermobacter marburgensis str. Marburg] Length = 216 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 6/166 (3%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A++ D I GS I+G +VH LR + DAI+VGI TVLADDP LT Sbjct: 2 RPYVILNAAMTLDGKIA-TKTGSSEISGEEDLRRVHELRRECDAIMVGINTVLADDPRLT 60 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNIN 266 R++ + +P+R+++D + L+ +++ AP +I V+E+ RK+ Sbjct: 61 VHRVDAEEGDNPVRVVVDSRARTPLNFRVLNDE--APTVIGVSESAPASRVNELRKRAEV 118 Query: 267 IIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 ++ R +L LL L GV L++EGG+ + +S + LVD + Sbjct: 119 VVAGKERVNLCLLLERLHEMGVRRLMLEGGSTLNYSMLTEGLVDEV 164 >gi|223041133|ref|ZP_03611388.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267] gi|222877627|gb|EEF12753.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267] Length = 362 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 5/153 (3%) Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L+ G+ +GA AYVTLEPC+H G++PPCA+ + VV+ D + SG G L Sbjct: 106 LQNHGDLLKGAKAYVTLEPCAHRGKTPPCAELLRLLKFAEVVIARGDENAVASG-GAHIL 164 Query: 120 SQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V + +G + +L Q S L ++ N + + S I+ Sbjct: 165 QSGGVAVKFDVLRQGADELIEPFLAWQRGNFSFFKLALSA---NGVAVGTAQSKIISNLA 221 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 S+ H LR+ ++ +++G TV AD P L RL Sbjct: 222 SRTHSHRLRSAAELLVIGGATVRADRPRLDTRL 254 >gi|268323388|emb|CBH36976.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured archaeon] Length = 224 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 13/173 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + + A+S D I I+G + +++V L+A SDAI+VGIGTVLAD+P L Sbjct: 2 ERPFVFINAAMSADGKISTVARVQTRISGRVDRDRVDALKAGSDAIMVGIGTVLADNPSL 61 Query: 208 TCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 T + QE +P+RI++D + +D++++ +I V++ ++A Sbjct: 62 TVKSRKRQEDRKQAERDENPIRIVVDSTARTPIDAEMLSKGSGKRIIAVSKR--AIVADV 119 Query: 260 FR-KKNINIIYCDCRDLKKLLTILVG--RGVTSLLVEGGAAVAHSFINSRLVD 309 R + II C ++ + + RGV L+VEGGA + S ++ LVD Sbjct: 120 DRLGEKAEIIVCGREEVDLKKLLDLLWQRGVKRLMVEGGATLNWSLVSQGLVD 172 >gi|238501136|ref|XP_002381802.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus NRRL3357] gi|220692039|gb|EED48386.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus NRRL3357] Length = 273 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 33/224 (14%) Query: 135 KIFLHAYLTRQVEKR------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + FL +L E TL A S D+ + +A ++G SK H LR+ Sbjct: 13 RTFLEPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRS 72 Query: 189 QSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKT 239 + DAIL+G+GT +AD+P L CR+ P I++DP + + SKI+ Sbjct: 73 RHDAILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILDL 132 Query: 240 AL----LAPVIIVTENDDP-----VLALAFRKKNINI-IYCDCR-----DLKKLLTILVG 284 AP II + +P L ++ K I + ++ + D +L L Sbjct: 133 VQEGKGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERILDWTAVLECLRN 192 Query: 285 RGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 G+ S+++EGG V +S + R LV+S+I+ + +G+GG+ Sbjct: 193 EGLRSVMIEGGGTVINSLLEPRWAHLVNSVIVTIAPTWLGQGGV 236 >gi|302673289|ref|XP_003026331.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8] gi|300100013|gb|EFI91428.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8] Length = 273 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 72/259 (27%), Positives = 112/259 (43%), Gaps = 37/259 (14%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L Y + R +TL A S D I G + ++G S H +R DAIL+G+ Sbjct: 15 LAGYDLKHHADRPSVTLTFAQSLDAKIAGTGGKQLILSGKESMIMTHWMRTMHDAILIGV 74 Query: 198 GTVLADDPELTCR---------LNGLQEHS-----PMRIILDPHFKLSLDSKIIKTALLA 243 GT L DDP+L R EH P +ILD +LS K++ Sbjct: 75 GTALNDDPQLNARHLPARSPGTYESSSEHGQPYNLPRPVILDARLRLSPSCKLLGNFQSG 134 Query: 244 ----PVIIV---TENDDPVLALAF--RKKNIN-------IIYCDCRD----LKKLLTILV 283 P + + + +P+ + + RK+ + I+ D + ++ LL L Sbjct: 135 TGRRPWVFTLDGSASPNPLQQVEWLERKQALEEAGARVVIVKGDLGNGTLSIQALLKTLH 194 Query: 284 GRGVTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 RGV SL+VEGGA+V SF+++ +VD+II+ + +GE G+ ++ G F Sbjct: 195 ERGVHSLMVEGGASVIKSFLDASQGGVVDTIIVTVAPTFVGEDGVGYGVQLGESGGKFKH 254 Query: 341 VRRDYFGSDVCLEYIGKNL 359 V G D K+L Sbjct: 255 VSTQVVGVDTVFVLGPKDL 273 >gi|55377942|ref|YP_135792.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloarcula marismortui ATCC 43049] gi|55230667|gb|AAV46086.1| 25-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Haloarcula marismortui ATCC 43049] Length = 219 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 12/197 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A+S D + + I+G ++V LRA SDA++VG+GT+LADDP LT Sbjct: 2 HVIVNAAMSVDGKLSSRRREQIAISGPDDFDRVDQLRADSDAVMVGVGTILADDPSLTVD 61 Query: 211 LNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 + +P R+I D + D+ ++ ++V+E P Sbjct: 62 DADRRAARAERGDPENPARVIADSRIRTPPDATVLD-GRAQTYLLVSEAAPPDFIEEMED 120 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +I D DL L L G G+ L+VEGG + S + LVD + +Y VI Sbjct: 121 AGAYVIAAGQDRVDLTTTLAKLEGDGIDQLMVEGGGELIFSLLEEALVDELFVYVGPKVI 180 Query: 321 GEGGIPSPLE-EGYLEK 336 G P+ + +G++E Sbjct: 181 GGRDAPTLADGDGFIED 197 >gi|223994971|ref|XP_002287169.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976285|gb|EED94612.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 359 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 67/236 (28%), Positives = 108/236 (45%), Gaps = 22/236 (9%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK---NQVHLLRAQSDAILVGIGT 199 T ++++ + +TLK+A + G+A F S + VH LR +S A+LVG GT Sbjct: 113 TSRIKEVTGVTLKMAFDSSPVWGVADLSETKSERFTSPESLDMVHRLRRESSAVLVGRGT 172 Query: 200 VLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 V D+ LT R G E P+R++LDP L + I + V+ ++ Sbjct: 173 VEYDNCSLTVRRVELGEGEEQPVRVVLDPSLSLLGRNYTIFSDGYPTVVYHLQSGREEEI 232 Query: 258 LAFRKKNI------NIIYCDCRDLKKLLTI--------LVGRGVTSLLVEGGAAVAHSFI 303 + + N I + K+ T+ L RG+ ++VEGGAA A +F+ Sbjct: 233 SREERDFVTFVEMPNQISMSTDNDKEQFTLSPQGIIDDLAKRGLNHIMVEGGAATARAFL 292 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358 N R VD IL R+ + E P+ ++E L+ + GSD+ +EY +N Sbjct: 293 NERAVDRAILVRASVEFQEPK-PAQIDEDTLKAAELQMIGTTNMGSDI-VEYWSRN 346 >gi|15790310|ref|NP_280134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium sp. NRC-1] gi|169236043|ref|YP_001689243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium salinarum R1] gi|10580782|gb|AAG19614.1| riboflavin-specific deaminase [Halobacterium sp. NRC-1] gi|167727109|emb|CAP13894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium salinarum R1] Length = 220 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 13/188 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A+S D + V ++G +V LRA DA++VG+GTVLADDP LT Sbjct: 2 HVVVNAAMSADGKLSTRRREQVTLSGDADFERVDELRASVDAVMVGVGTVLADDPSLTLD 61 Query: 211 LNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV---LALA 259 +G + P R++ D H + D++++ A A ++ +PV +L Sbjct: 62 DSGHVAAREERGESPHPARVVADSHARTPPDARLLDGA--AETYVLVAEAEPVEHRESLE 119 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + + + DL L L RGV L+VEGG + S LVD + ++ + + Sbjct: 120 AAGATVVVAGENRVDLPSALDALESRGVDRLMVEGGGELIFSLFAEELVDELSVFVAPQL 179 Query: 320 IGEGGIPS 327 IG P+ Sbjct: 180 IGGRDAPT 187 >gi|312220526|emb|CBY00467.1| similar to 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leptosphaeria maculans] Length = 273 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 30/217 (13%) Query: 138 LHAYLTRQVEKRSH----ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + Y+T Q SH +TL A S D+ + +A ++G SK H LR++ DAI Sbjct: 17 IDPYIT-QPNHSSHSKPFVTLTFATSLDSQLSLAPGVQTALSGPDSKAMTHYLRSKHDAI 75 Query: 194 LVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKTAL--- 241 L+G+GT +ADDP L CR+ E P +I+DP ++ + +SK+++ A Sbjct: 76 LIGVGTAIADDPSLNCRIGGVGGYGGEGLEGQPRPVIIDPKCRWEFTEESKVMRLARERK 135 Query: 242 -LAP-VIIVTENDDPVLALAFRKKNINIIYCD--------CRDLKKLLTILVGRGVTSLL 291 AP VI TE + + + C + LL L + S++ Sbjct: 136 GKAPWVITQTEMSEGKRRILESVGGKVLAVCSVPALPVTASSEWDDLLKALAREEIRSVM 195 Query: 292 VEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 +EGG + + + N LVDS+I+ + +GEGG+ Sbjct: 196 IEGGGRIINDLLGAKNFNLVDSVIVTIAPTWLGEGGV 232 >gi|237755949|ref|ZP_04584538.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691898|gb|EEP60917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium yellowstonense SS-5] Length = 221 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 15/218 (6%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203 KR ++ + V+ D + ++ G S I F+ + +H RA+ D I+VG T+ D Sbjct: 2 KRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P LT R + +P RII + D+ I+K +P IIVT P L + Sbjct: 62 NPYLTVRY--VSGKNPTRIIPTSTAYIPPDANILKKD--SPTIIVTTEKAPKERLKMLSE 117 Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + +I DL K++ IL RG+ +L+VEGG+ + + I + LVD I + ++G Sbjct: 118 KVEVIIAGKEEVDLIKMMDILYNRGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVG 177 Query: 322 EGGIPSPL-EEGY--LEKNFMCVRRDYF--GSDVCLEY 354 P+ + EG+ LE+ R +F GS + E+ Sbjct: 178 GTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEW 215 >gi|255930967|ref|XP_002557040.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581659|emb|CAP79769.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 277 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 31/222 (13%) Query: 135 KIFLHAYLTRQVEKRSHI-----TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + FL +L Q + TL A S D+ + ++ ++G SK H LR++ Sbjct: 16 RAFLEPHLPPQDGSAPQLDLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHYLRSR 75 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTA 240 D I++G+GT +ADDP L CR++G+ + P +++DP ++ S DSK+ + Sbjct: 76 HDGIVIGVGTAVADDPGLNCRISGVGGYGRPGLDGQPRPVVIDPTARWEFSDDSKLFQLC 135 Query: 241 L----LAPVII--VTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTILVGRG 286 AP II V + + AL R I R +LL L G Sbjct: 136 REGRGRAPWIITAVEKPNAEKQALLERYGGRFIQVKMVRTHTGRHQIVWPELLVTLKSNG 195 Query: 287 VTSLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI 325 + S+++EGG V S ++ + L+DS+I+ + +GEGG+ Sbjct: 196 LRSVMIEGGGHVIKSLLSPQYMSLLDSVIVTIAPTWLGEGGV 237 >gi|163794376|ref|ZP_02188348.1| bifunctional deaminase-reductase-like protein [alpha proteobacterium BAL199] gi|159180544|gb|EDP65065.1| bifunctional deaminase-reductase-like protein [alpha proteobacterium BAL199] Length = 261 Score = 73.2 bits (178), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 + G + + +H LRA DA+++G GT + DDP LT R ++ +P+R++LDP ++ D Sbjct: 83 VNGSEALDHLHRLRALVDAVVIGAGTAVDDDPSLTTRR--VEGSNPVRVLLDPSGRVPAD 140 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 K+ + AP ++ PV A R R + +L L RG +LVE Sbjct: 141 RKLFRDGQ-APTLVCG----PVRPGAERLDTSGDQETQ-RSPRDVLAALSARGFDIVLVE 194 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GGA A SF+++R +D + L + ++G G Sbjct: 195 GGAKTASSFLDARCIDRLHLLVAPTLLGSG 224 >gi|169781288|ref|XP_001825107.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus oryzae RIB40] gi|83773849|dbj|BAE63974.1| unnamed protein product [Aspergillus oryzae] Length = 273 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 33/224 (14%) Query: 135 KIFLHAYLTRQVEKR------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + FL +L E TL A S D+ + +A ++G SK H LR+ Sbjct: 13 RTFLEPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRS 72 Query: 189 QSDAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDP--HFKLSLDSKIIKT 239 + DAIL+G+GT +AD+P L CR+ P I++DP + + SKI++ Sbjct: 73 RHDAILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILEL 132 Query: 240 AL----LAPVIIVTENDDP-----VLALAFRKKNINI-IYCDCR-----DLKKLLTILVG 284 AP II + +P L ++ K I + ++ + D +L L Sbjct: 133 VKEGKGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERRLDWTAVLECLRN 192 Query: 285 RGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI 325 G+ S+++EGG V +S + + LV+S+I+ + +G+GG+ Sbjct: 193 EGLRSVMIEGGGTVINSLLEPGWAHLVNSVIVTIAPTWLGQGGV 236 >gi|171186187|ref|YP_001795106.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermoproteus neutrophilus V24Sta] gi|170935399|gb|ACB40660.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermoproteus neutrophilus V24Sta] Length = 217 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/145 (31%), Positives = 74/145 (51%), Gaps = 7/145 (4%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 ++H LRA DA++VG T + D+P LT R ++ +P+R+++D K D ++ ++ Sbjct: 34 RLHALRAAVDAVIVGANTAIVDNPRLTVRY--VEGRNPLRVLIDGSLKAPTDLRMFDSS- 90 Query: 242 LAPVIIVTENDDP---VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +P I+ T P L R + + D D ++L +L RGV L+EGG Sbjct: 91 -SPTIVFTTRKAPPEKAAELKARGVEVYVAEGDQVDPAEVLNVLYQRGVRKALLEGGGRT 149 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 F++ LVD I+L + V G G Sbjct: 150 NWEFLSKCLVDEIVLTVTPYVFGSG 174 >gi|156031052|ref|XP_001584851.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980] gi|154700525|gb|EDO00264.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980 UF-70] Length = 277 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 63/220 (28%), Positives = 108/220 (49%), Gaps = 32/220 (14%) Query: 151 HITLKIAVSQDNMIG-MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + TL A S D+ I + G GS PI+G SK H LR++ DAIL+G+ T +AD+P L C Sbjct: 38 YATLTYATSMDSQITILPGIGS-PISGPDSKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96 Query: 210 RLNGLQ--------EHSPMRIILDP--HFKLSLDSKIIKTAL----LAPVIIVTENDDPV 255 RL G+ + P +I+DP ++ +SKI AP II + + + Sbjct: 97 RLEGVGGYGGGDTLKGQPRPVIIDPKGRWEFGKESKIFGLVKDGKGKAPWIITAQQESKI 156 Query: 256 LALAFRKKNI------NIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFI- 303 + +K+N+ ++ + K +L L + SL++EGGA + + + Sbjct: 157 ---SSQKRNLLDAAGGKFLFVTTDETGKFSWCDILRALRDEDIESLMIEGGAGIINDMLA 213 Query: 304 -NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 + L+ SII+ + + +G+GG+ E EK + ++ Sbjct: 214 RSHNLISSIIVTIAPVWLGKGGVVVTPERENREKEALRLK 253 >gi|322380244|ref|ZP_08054465.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5] gi|321147322|gb|EFX42001.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5] Length = 353 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 41/256 (16%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 +P+ M A ++ + L NPSVAC+I+ + ++ + PHAEV+A Sbjct: 6 LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65 Query: 60 LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90 L++A + + T VTLEPC+H+G++PPCA Sbjct: 66 LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149 + + ++V++ + + G GL L + GI ++ ++E EG+ L+ + + +E++ Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPF--KCLEQK 182 Query: 150 SHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 L KIA+ + G I+ +S+ H R+ ++ +++ +V +D P L Sbjct: 183 GVFNLFKIALR------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLD 236 Query: 209 CRLNGLQEHSPMRIIL 224 RL+ + P IL Sbjct: 237 SRLSAYTKRPPNVAIL 252 >gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545] Length = 628 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 131/333 (39%), Gaps = 17/333 (5%) Query: 23 GLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC-S 80 GLT +P C L+ DG V+ G AEV A + A A G AY+ LEP Sbjct: 75 GLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAADAANGGAAGGCAYLNLEPVHG 134 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-----------DRM 129 + + G+ RVV+ + P + L +G+ V + Sbjct: 135 NDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALRARGVHVVVLGDDDLDEREEE 194 Query: 130 MESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + G+ + A L R R LK A++ D I S +TG ++ V RA Sbjct: 195 AKQRGEAARNRALLYRVATGRPFSVLKYAMTVDGKIATTSGHSSWVTGPTARGAVWAERA 254 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +SDA++VG TV D+P LT R H P R++L L + AP I++ Sbjct: 255 RSDAVVVGGSTVRRDNPNLTTRRK--DGHLPARVVLSRTMDLPGPRTNLWDTSEAPTIVM 312 Query: 249 TEND-DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 T P R+ + +I D + RG L E G +A +N + Sbjct: 313 TRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEYCGKRGYLQLFWECGGGLAAPALNDGV 372 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 + ++ + + +IG G P+P G + M Sbjct: 373 IHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMT 405 >gi|189190852|ref|XP_001931765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973371|gb|EDU40870.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 242 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 26/201 (12%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 ++ +TL A S D+ + +A ++G SK H LR++ DAIL+G GT +AD+P L Sbjct: 39 KTFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRYDAILIGAGTAIADNPSLN 98 Query: 209 CR-------LNGLQEHSPMRIILDPH--FKLSLDSKIIKTAL----LAPVIIVTEND--D 253 CR P +++DPH ++ + +SK+++ A AP I+ + N D Sbjct: 99 CRLEGVGGYGGEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTSTNPPAD 158 Query: 254 PVLALAFRKKNINIIYCDCRDLKK-------LLTILVGRGVTSLLVEGGAAVAHSFINS- 305 L + RD+ + +L L G+ S+++EGG V + F+ Sbjct: 159 RRATLENVGGKFLFLGLSARDVSQAGSSWHIILDALKQEGIGSVMIEGGGFVINDFLGPS 218 Query: 306 ---RLVDSIILYRSQIVIGEG 323 LV+S+I+ + +G+G Sbjct: 219 PAYSLVNSVIVTIAPTWLGKG 239 >gi|322378922|ref|ZP_08053338.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis HS1] gi|321148664|gb|EFX43148.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis HS1] Length = 353 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/256 (24%), Positives = 117/256 (45%), Gaps = 41/256 (16%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 +P+ M A ++ + L NPSVAC+I+ + ++ + PHAEV+A Sbjct: 6 LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65 Query: 60 LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90 L++A + + T VTLEPC+H+G++PPCA Sbjct: 66 LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149 + + ++V++ + + G GL L + GI ++ ++E EG+ L+ + + +E++ Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPF--KCLEQK 182 Query: 150 SHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 L KIA + + G I+ +S+ H R+ ++ +++ +V +D P L Sbjct: 183 GVFNLFKIA------LRLNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLD 236 Query: 209 CRLNGLQEHSPMRIIL 224 RL+ + P IL Sbjct: 237 SRLSAYTKRPPNVAIL 252 >gi|224373556|ref|YP_002607928.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH] gi|223589572|gb|ACM93308.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH] Length = 325 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 66/220 (30%), Positives = 99/220 (45%), Gaps = 45/220 (20%) Query: 24 LTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------------------- 63 LT NP+V A +IVK+ I G V G PHAEV AL EA Sbjct: 23 LTYPNPAVGAAVIVKNQIFTG--VHKKAGEPHAEVHALWEAYRAFHDAPELYTSKEIHEY 80 Query: 64 -GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + G A YVTLEPC+H G++P CA + E + V + DP ++ G G++ Sbjct: 81 LKKHHNGFFNDANVYVTLEPCAHEGKTPSCAYLLKELKPKSVSIGWPDP-IKGHGGGVEI 139 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L GI V + + + ++ Q + K+A++ + I G+I Sbjct: 140 LKNSGIDVKILNDKRCFHLIEPFIKWQ---NRFVFYKLALTMNGAI---------TGGYI 187 Query: 179 SKNQ----VHLLRAQSDAILVGIGTVLADDPELTC-RLNG 213 S ++ VH +R + D +++G TV D P L R+NG Sbjct: 188 SSDESLDWVHNIRDKIDLLVIGGNTVRIDRPTLDARRVNG 227 >gi|85108193|ref|XP_962526.1| hypothetical protein NCU08313 [Neurospora crassa OR74A] gi|28924134|gb|EAA33290.1| hypothetical protein NCU08313 [Neurospora crassa OR74A] Length = 321 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/225 (28%), Positives = 101/225 (44%), Gaps = 47/225 (20%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ + +A ++G SK H LR++ AILVG+GT +ADDP L Sbjct: 57 KRPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHFLRSRHAAILVGVGTAVADDPGL 116 Query: 208 TCRL------------NGLQEHSPMR---IILDP--HFKLSLDSKIIKTAL----LAPVI 246 C++ NG +E P + IILDP +++S SK+I+ A L P I Sbjct: 117 NCKILSPLSSSPDGVGNGKREQHPNQPRPIILDPSARWEVSEKSKVIQLARLKQGLGPFI 176 Query: 247 IVTENDDPV--------------------LALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 + + V L + K + +L + G Sbjct: 177 FTAKKVEEVPEERRAVVEGIGGKYVRVEGLKVKGEGKGEGATSRESFAWVDVLRTIKEEG 236 Query: 287 VTSLLVEGGAAVAHSFIN------SRLVDSIILYRSQIVIGEGGI 325 + S+++EGG +V +S ++ LVDS+I+ + +G GG+ Sbjct: 237 LDSVMIEGGGSVINSLLSLEQAGEQELVDSVIVTIAPTWLGAGGV 281 >gi|188996174|ref|YP_001930425.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931241|gb|ACD65871.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 221 Score = 72.8 bits (177), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 63/218 (28%), Positives = 107/218 (49%), Gaps = 15/218 (6%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203 KR ++ + V+ D + ++ G S I F+ + +H RA+ D I+VG T+ D Sbjct: 2 KRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P LT R + +P RII + LD+ I+K +P IIVT P + + Sbjct: 62 NPYLTVRY--VSGKNPTRIIPTSTADIPLDANILKKD--SPTIIVTTEKAPEERVKALSE 117 Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + +I DL K++ IL +G+ +L+VEGG+ + + I + LVD I + ++G Sbjct: 118 KVEVIVAGKEEVDLIKMMDILYNKGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIVG 177 Query: 322 EGGIPSPL-EEGY--LEKNFMCVRRDYF--GSDVCLEY 354 P+ + EG+ LE+ R +F GS + E+ Sbjct: 178 GTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEW 215 >gi|297618676|ref|YP_003706781.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus voltae A3] gi|297377653|gb|ADI35808.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus voltae A3] Length = 235 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 25/211 (11%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSL 232 I+G +VH +R DAI+VGIGTVL D+P+LT L+ + +P+RI++D + ++ L Sbjct: 26 ISGENDLKRVHQIRKDVDAIMVGIGTVLKDNPKLTIHKIPLENNKNPVRIVVDSNLRIPL 85 Query: 233 DSKIIKTALLAPVIIVT------ENDDPVLALAFRK-----KNINIIYCDCRDLKKLLTI 281 DS+++ A +I T E + + + K +N+ IIY +LK L + Sbjct: 86 DSRVLNED--AKTVIATTEYGSLEQSEKIKRIEKIKELESIENVEIIYSG--NLKVDLEL 141 Query: 282 LVGR----GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 L+G+ + S+L+EGG + LVD + +Y + + G P+ ++ + Sbjct: 142 LMGKLSKMDIKSILLEGGGTLNWGMFEKNLVDEVRVYVAPKIFGGSNAPTYVDGDGFKTL 201 Query: 338 FMCVRR---DYFGSD--VCLEYIGKNLCLQE 363 CV DY+ D + LEY K QE Sbjct: 202 EDCVNLELIDYYQMDEGIVLEYFIKKDNNQE 232 >gi|291276854|ref|YP_003516626.1| putative priboflavin-specific deaminase [Helicobacter mustelae 12198] gi|290964048|emb|CBG39888.1| putative priboflavin-specific deaminase [Helicobacter mustelae 12198] Length = 345 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 39/232 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA----- 63 MS ++ + LT NP+VA ++V +G ++ G PHAEV +L+EA Sbjct: 7 LMSLCIKKAWEFQTLTLPNPAVAAMVVSGEGEILSLCAHQKSGAPHAEVLSLKEAYYKLT 66 Query: 64 -GEEARGATA---------------------YVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 E + T YVTLEPC+ YG++PPCA+ + GI+ V+ Sbjct: 67 KDENIKNITNSQELHQILRNHHQNLFKDCSIYVTLEPCTCYGKTPPCAEILQSIGIKSVI 126 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR-SHITLKIAVS 159 + + G+ + L + G + R++E E + L +L Q ++R S L + Sbjct: 127 IGALESTKNQGGKEM--LEKSGARVTARILEKECQDLLLPFLCYQKKQRFSLFKLATRLD 184 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 D G C I + NQ R+ D I V T+ D+P L R Sbjct: 185 GDYKSGSISCSEAKI---FTHNQ----RSVCDKIFVSQNTLRNDNPLLDARF 229 >gi|284176227|ref|YP_003406504.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine 1-reductase [Haloterrigena turkmenica DSM 5511] gi|284017884|gb|ADB63831.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine 1-reductase [Haloterrigena turkmenica DSM 5511] Length = 220 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 92/197 (46%), Gaps = 13/197 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 H+ + A S D + + I+G +V LRA SDA++VG+GTVLADDP LT Sbjct: 2 HVVVNAATSADGKLSSRRREQIAISGEADFERVDRLRAYSDAVVVGVGTVLADDPHLTVK 61 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 RL + P R+++D + D+ ++ A A + PV + Sbjct: 62 DESLCDERLERGEPKQPARVVVDSKGRTPTDAAVLDDA--ATTYVCLSEAAPVGSRMDLV 119 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + ++ D DL + L +G+ ++VEGG + S + LVD + L+ VI Sbjct: 120 DHAELVTAGNDRVDLLRAFAALEEQGLERIMVEGGGELIFSLFEAGLVDELRLFVGPKVI 179 Query: 321 GEGGIPSPLE-EGYLEK 336 G P+ + EG++E+ Sbjct: 180 GGRDAPTLADGEGFVEE 196 >gi|114793489|pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793490|pdb|2AZN|B Chain B, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793491|pdb|2AZN|C Chain C, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793492|pdb|2AZN|D Chain D, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793493|pdb|2AZN|E Chain E, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793494|pdb|2AZN|F Chain F, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase Length = 219 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/163 (32%), Positives = 83/163 (50%), Gaps = 18/163 (11%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +RA D I VGIGTVL DDP LT + +P+RI++D ++ L+++++ Sbjct: 35 RVHKIRANVDGIXVGIGTVLKDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLNKD- 92 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII------YCDCR----DLKKLLTILVGRGVTSLL 291 A II T D ++K I I+ C DLKKL IL +G+ S+L Sbjct: 93 -AKTIIATTED----TNEEKEKKIKILEDXGVEVVKCGRGKVDLKKLXDILYDKGIKSIL 147 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY 333 +EGG + LVD + +Y + + G P+ ++ EG+ Sbjct: 148 LEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGF 190 >gi|92113300|ref|YP_573228.1| bifunctional deaminase-reductase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796390|gb|ABE58529.1| bifunctional deaminase-reductase-like protein [Chromohalobacter salexigens DSM 3043] Length = 283 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 7/171 (4%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++ S D I S +TG S+ +H LRA DA+L+G GT ADDP L+ R + Sbjct: 77 QLGQSLDGRIATVSGASHYVTGEASRVHLHRLRALVDAVLIGAGTACADDPRLSVR--HV 134 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 H+P+R+ILDP+ ++ + + AP + +T + P AL + D D Sbjct: 135 SGHNPVRVILDPNGRVPATQGVFQND-EAPTLHITRHPLPRGALGAHVD--TCVVEDAAD 191 Query: 275 LK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L L L RG+ +LVEGG F+ +D + + + ++IG G Sbjct: 192 LTPAALCRTLAARGLRRVLVEGGGQTVSRFLADGELDRLHVVVAPLLIGSG 242 >gi|312136821|ref|YP_004004158.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase [Methanothermus fervidus DSM 2088] gi|311224540|gb|ADP77396.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanothermus fervidus DSM 2088] Length = 227 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 61/215 (28%), Positives = 111/215 (51%), Gaps = 13/215 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A++ D I S I+G +VH LR + D I+VGI TV+ DDP LT Sbjct: 13 RPYVILNAAMTLDGKIATKTYDS-KISGEEDLIRVHKLRKECDGIMVGINTVIIDDPRLT 71 Query: 209 C-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTE--NDDPVLALAFRKKN 264 ++N +P+R+I D + L+++++ AP +I V+E ++ V L R K Sbjct: 72 VHKINSKPSDNPVRVIADSRARTPLNARVLNNE--APTVIAVSEKAKNEKVEKLKKRAK- 128 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + ++ + DL L+ L G+ L++EGG+ + S ++ LVD + + + +++G Sbjct: 129 VLVLGKERVDLVALMEKLKDMGINKLMLEGGSTLNFSMLSKGLVDEVRVCVAPMIVGGKD 188 Query: 325 IPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEY 354 + ++ EK ++ + Y+ G D+ LEY Sbjct: 189 AKTLVDGPGFEKMDEAIKLKLKKYYTLGKDLILEY 223 >gi|330506465|ref|YP_004382893.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta concilii GP-6] gi|328927273|gb|AEB67075.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta concilii GP-6] Length = 220 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 58/172 (33%), Positives = 79/172 (45%), Gaps = 14/172 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R + + A+S D I + I+G +V LRA SDAI+VG+GTVLADDP L Sbjct: 2 NRPFVFINSAMSADGKISSRDRRQIRISGKEDLMRVDELRAASDAIMVGVGTVLADDPGL 61 Query: 208 TCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + L+E P RI+ D + + ++KI+ +I P L Sbjct: 62 RVKSRILREKRKDMGQLKEPFRIVADSNARTPANAKILGPG----CMIAVSYSAPEERLD 117 Query: 260 FRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 + II C DL L+ L RGV L+VEGGA + S I LVD Sbjct: 118 RLRSGCEIIKCGTEMVDLPGLMEELYNRGVRRLMVEGGARLNWSLIELGLVD 169 >gi|154148617|ref|YP_001405744.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC BAA-381] gi|153804626|gb|ABS51633.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC BAA-381] Length = 362 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 82/153 (53%), Gaps = 8/153 (5%) Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ ++ +G +VTLEPCSH G++PPCA I + V+ D + SG G L Sbjct: 104 IKNHADKLKGGKIFVTLEPCSHLGKTPPCANLISALKFKDCVIGAKDENKIASG-GAYIL 162 Query: 120 SQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 ++ G+ V + ++E +I + + Q + + K+A+S + G+A CG + I+ Sbjct: 163 NKNGVNVKLGVCKNEAEILISPFKKWQKNGK-FVFFKLALSAN---GVA-CGGI-ISNEK 216 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 S+ H LRA SD +++G TV D P+L RL Sbjct: 217 SRIFSHKLRAISDLLIIGGNTVRTDRPKLDTRL 249 >gi|310815143|ref|YP_003963107.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare Y25] gi|308753878|gb|ADO41807.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare Y25] Length = 324 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 101/223 (45%), Gaps = 27/223 (12%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEP 78 G T+ NP V C I+ G V+ G HAE A+ G + T VTLEP Sbjct: 26 GATAPNPPVGCAILDSKGAVLAVAAHQKAGSAHAEALAIAACRAAGTYDQIDTFVVTLEP 85 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD--RMMESEG-- 134 C+H+GR+ PC I++ RRV + DP+ RV+G G L G+ V + + G Sbjct: 86 CNHHGRTAPCTDAILQTPARRVFIGARDPNPRVAGGGTARLRAAGLAVYDWQALGMAGTC 145 Query: 135 -----KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG---FISKNQV--- 183 + + R + R IT+K V AG +P G F ++ + Sbjct: 146 TGIGADALIAPFRKRVLTGRPWITVKQVVD-------AGGSMIPPAGRKTFARQSSLELA 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILD 225 H +R +++ I+ G GTVLAD P T R L +H ++LD Sbjct: 199 HAMRRRAEVIVTGAGTVLADWPLFTVRHLADFPDHRRALVVLD 241 >gi|225849717|ref|YP_002729951.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Persephonella marina EX-H1] gi|225645135|gb|ACO03321.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Persephonella marina EX-H1] Length = 221 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H LRA+ D I+VG T+ D+P LT R ++ +P RI+ + LD+ I++ Sbjct: 41 LHELRAKVDGIMVGAETIRTDNPFLTVRY--VEGKNPTRIVPTSKADIPLDANILEKH-- 96 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP IIVT P + K+ + +I D DL +++ L +G+ +L+VEGG+ + Sbjct: 97 APTIIVTSESAPEEKVKALKEKVEVIISGKDQVDLIEMMDTLYRKGIKTLMVEGGSTLNW 156 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS 327 + I LVD I L ++G P+ Sbjct: 157 NLIKFGLVDEIRLIHMPFIVGGEDTPT 183 >gi|257460844|ref|ZP_05625945.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] gi|257442175|gb|EEV17317.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] Length = 407 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 79/301 (26%), Positives = 122/301 (40%), Gaps = 67/301 (22%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59 D +M ALR + + LT NP+V C+++ + G V+G G G HAE A Sbjct: 3 DEFYMDLALRAAWRYQALTLPNPAVGCVLLDRGGRVLGIGAHKKAGFLHAEANAVFAALC 62 Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77 L G RGA AYVTLE Sbjct: 63 DLDVNFAQDFACEYAREFGVKFQNLEALKSALLQPSFAYDFILNRHGGLLRGACAYVTLE 122 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRMMESEGK 135 PC+H G++P CA+ + + G+ RVV+ D + + +G G + L + I + D + + Sbjct: 123 PCAHRGKTPSCAELLAQLGLSRVVIGARDTNAQAAG-GAEILRRGSIEIKFDVCHAAAEE 181 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 + YL R+ +KI + + G I + VH LR+ D + V Sbjct: 182 LAEPFYLARE---SGFCFIKINAT------LNGAAHGRIGSEKQRVFVHELRSVCDYVGV 232 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 G TV AD P L R E S + +D K LD+++ K L + +T + D + Sbjct: 233 GGQTVRADRPTLDVRAAKFDEISALVGSVD---KPLLDTRVAK---LGEIGTLTNSTDKL 286 Query: 256 L 256 + Sbjct: 287 I 287 >gi|126732575|ref|ZP_01748373.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] gi|126707021|gb|EBA06089.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] Length = 198 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 6/159 (3%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 ITG +++ VH LRA DA+LVG GT AD+P LT R + P+RI+ H L L Sbjct: 4 ITGPEARHAVHALRATHDAVLVGGGTARADNPRLTVRGYD-RSRPPVRIVASRHLDLPLL 62 Query: 234 SKIIKTALLAPVIIVTEND---DPVLAL-AFRKKNINIIYCDCR-DLKKLLTILVGRGVT 288 S + +TA PV + D D V A + + + R D LL +L G+T Sbjct: 63 SDLARTAKDVPVWLCHGADARGDLVTAWEGIGARLMTVPLAGGRLDAAALLKVLGQEGLT 122 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 + EGG +A S + LVD + + + + +G G P Sbjct: 123 RVFCEGGGQLAASLLAQDLVDELHVLTAGLALGAEGHPG 161 >gi|292655495|ref|YP_003535392.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax volcanii DS2] gi|291371668|gb|ADE03895.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax volcanii DS2] Length = 219 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 11/187 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ + A S D + V I+G +V +RA +DA+ VG+GTVLADDP LT Sbjct: 2 HVHVNAAASLDGKLSSRRREQVTISGDDDFARVDEIRATADAVAVGVGTVLADDPHLTLD 61 Query: 211 LNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 GL P R++ D + D++I+ A ++V+E A Sbjct: 62 DPGLVAAREDRGDSPHPARVVADSRARTPTDARILDDAATT-YLLVSEAAPGGRREALEA 120 Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ L L RGV L+VEGG + S + LVD + LY +VI Sbjct: 121 AGAELVVAGAERVSLPDAFDALEARGVDRLMVEGGGELIFSLFEAGLVDELTLYVGSLVI 180 Query: 321 GEGGIPS 327 G P+ Sbjct: 181 GGRDAPT 187 >gi|119871899|ref|YP_929906.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum islandicum DSM 4184] gi|119673307|gb|ABL87563.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Pyrobaculum islandicum DSM 4184] Length = 217 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 ++H +RA DAI+VG T + D+P LT R ++ +PMR+++D + L +I ++ Sbjct: 33 KRLHSIRASVDAIIVGANTAIVDNPRLTVRY--VEGKNPMRVLIDGALRAPLTLRIFDSS 90 Query: 241 LLAPVIIVTENDDP---VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 AP ++ T + P + L R I I + D +L L +GV +L+EGG Sbjct: 91 --APTVVFTTHKAPQDKIHELQKRGVKIYITEGETVDPAYVLDTLYKQGVRKVLLEGGGR 148 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG 323 F++ LVD IIL + V G G Sbjct: 149 TNWEFLSKCLVDEIILTVTPYVFGRG 174 >gi|298707242|emb|CBJ25869.1| conserved unknown protein [Ectocarpus siliculosus] Length = 408 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/222 (27%), Positives = 92/222 (41%), Gaps = 69/222 (31%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR- 210 +TLK+A+ ++ + G T S + VH +R +A+LVG+GTV+ DDP LT R Sbjct: 149 VTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRR 208 Query: 211 --LNGLQEHSPMRIILDPHFK-------------------------------------LS 231 LNG Q P R++LD + L Sbjct: 209 VPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAAELK 268 Query: 232 LDSKIIKTAL---------------LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 D K +TA+ LAPV V + ++ + DL Sbjct: 269 ADVKRSRTAVSDSPGETEPDTSHQKLAPVDFV--------GMPVQRPGAGV------DLS 314 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 +L L+ RG+ +LVEGG +VA F++ RLVD I+ R+ + Sbjct: 315 GVLGALLERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPM 356 >gi|50287537|ref|XP_446198.1| hypothetical protein [Candida glabrata CBS 138] gi|54036256|sp|Q6FU96|RIB7_CANGA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49525505|emb|CAG59122.1| unnamed protein product [Candida glabrata] Length = 244 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 26/216 (12%) Query: 137 FLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 FL YL R +TL A S D I I+ +K H LR D IL+ Sbjct: 11 FLKNYLPDGHRNGRPFVTLTYAQSIDAKIAKQRGVRTTISHIETKEMTHYLRYFHDGILI 70 Query: 196 GIGTVLADDPELTCRLNG--------LQEHSPMRIILDPHFKLSLD----SKIIKTALLA 243 G GTVLADDP L C+ G ++E SP IILDP K ++ + Sbjct: 71 GSGTVLADDPGLNCKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGK 130 Query: 244 PVIIVTENDDPVLALAFRKKNIN--IIYCDCRD---LKKLL-TILVGRGVTSLLVEGGAA 297 P I++T V ++ N+ I+ D D K +L T+ + S+++EGG+ Sbjct: 131 PPIVITTKTPKV-----KEANVEYMIMEPDANDRISWKSILDTLRRNYDMKSVMIEGGSH 185 Query: 298 VAHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331 V + + S L+DS+I+ I +G G+ SP +E Sbjct: 186 VINQLLMCSDLIDSLIVTIGSIYLGSEGVTVSPPDE 221 >gi|289548666|ref|YP_003473654.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Thermocrinis albus DSM 14484] gi|289182283|gb|ADC89527.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Thermocrinis albus DSM 14484] Length = 220 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 10/170 (5%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H +RA+ D I+VG TV D+P LT R ++ +P+R+I + LD+ I Sbjct: 40 LHEIRAKVDGIMVGCETVRTDNPSLTVRY--VEGKNPIRVIPCSTANVPLDANIFSKD-- 95 Query: 243 APVIIVTENDDPVLALAFRKK---NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP IIVT P + ++ + ++ D D KL+ +L RG+ SL+VEGGA++ Sbjct: 96 APTIIVTTLRAPEERIQRIRELGAEVWVVGEDLVDFDKLMPLLYERGIKSLMVEGGASIN 155 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPL-EEGYLE-KNFMCVR-RDYF 346 I VD I L +V+G +P+ + EG+ KN + +R R +F Sbjct: 156 WELIKRGYVDEIRLIHLPVVVGGENVPTLVGGEGFKSLKNLLHLRLRAHF 205 >gi|307720625|ref|YP_003891765.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM 16294] gi|306978718|gb|ADN08753.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM 16294] Length = 339 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 98/230 (42%), Gaps = 35/230 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA- 67 +M+ A+ + + GLT NP+V C IV + G ++ G PHAEV A++ A + Sbjct: 8 YMNLAISEAWKYQGLTYANPAVGCSIVGEHGELLAVEAHHKAGEPHAEVNAIKAAYYKLT 67 Query: 68 --------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + + Y TLEPCSH G++P CA I E GI+ V Sbjct: 68 QDEKILQLISSSQIHIYLLQNHNNIFKKCSLYSTLEPCSHVGKTPSCANLIAELGIKNVF 127 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 V V+D + + G L + G + +E + K + ++ + K A Sbjct: 128 VGVEDFNTD-AANGNTVLEKSGANISLHVEQQ-KCEDLLFPFKKFMSDKFVFFKWA---Q 182 Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + G G I+ S+ VH +R D +++G TV D P L RL Sbjct: 183 RLNGTTDAG--IISSAESRKNVHAMRDVCDLLVIGGNTVRNDRPTLDARL 230 >gi|328848151|gb|EGF97399.1| hypothetical protein MELLADRAFT_79837 [Melampsora larici-populina 98AG31] Length = 269 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 26/244 (10%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 H L + +R +TL A S D I + ++G S H++R + D ILVGI Sbjct: 27 FHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTHMMRTRHDGILVGI 86 Query: 198 GTVLADDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTA---------LLAPV 245 GT+L DDP+LT R E+ P I+LD + +D K+IK L+ Sbjct: 87 GTLLNDDPQLTARNLSFTVPLENQPQPIVLDTRLRTPIDCKLIKNYRNQTGKQPWLICAR 146 Query: 246 IIVTENDDPVLALAFRK----KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +++ D L A + N DL+K+ + G+ L++EGG+++ S Sbjct: 147 SMISSQDRQSLEEAGARVIPITNGMNPSNQGLDLEKVFEVCKINGINRLMIEGGSSIISS 206 Query: 302 FINSR----LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEY 354 +N +++ +++ S ++GEG ++ ++ +R GSD Y Sbjct: 207 CLNYTGDHPILNILVVTVSPYMVGEGLT---VKTSNIDSRLSLLRHIQTKILGSDAVFAY 263 Query: 355 IGKN 358 N Sbjct: 264 TSSN 267 >gi|257051630|ref|YP_003129463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halorhabdus utahensis DSM 12940] gi|256690393|gb|ACV10730.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Halorhabdus utahensis DSM 12940] Length = 220 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 16/198 (8%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 H+ + A+S D + V I+G ++V LRA SDA++VG+GTVLADDP LT Sbjct: 2 HVVVNAAMSADGKLSTHDREQVAISGEADFDRVDGLRADSDAVMVGVGTVLADDPSLTVD 61 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLAL 258 R + P R++ D + D++I+ +T L+ TE V L Sbjct: 62 DPDRIAQRGDRGDPPQPARVVADSRARTPPDAQILDDEAETYLVVGERAATEK---VERL 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + D DL L L G+ L+VEGG + S LVD + ++ + Sbjct: 119 ESTGATVIAAGHDRVDLSAGLDALESHGIDRLMVEGGGELIFSLFADDLVDELSVFVGPM 178 Query: 319 VIGEGGIPSPLE-EGYLE 335 +IG P+ + +G+LE Sbjct: 179 LIGGRDAPTLADGDGFLE 196 >gi|289803145|ref|ZP_06533774.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 189 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 12/141 (8%) Query: 110 RVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 +V+GRGL L Q GI V +M SE + +L R ++ LK+ S D MA Sbjct: 2 QVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMAS 61 Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH-- 217 S IT ++ V LRAQS AIL TVLADDP LT R L QE+ Sbjct: 62 GESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLR 121 Query: 218 SPMRIILDPHFKLSLDSKIIK 238 P+RI++D +++ +I++ Sbjct: 122 QPVRIVIDSQNRVTPAHRIVQ 142 >gi|325294796|ref|YP_004281310.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065244|gb|ADY73251.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 220 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 99/204 (48%), Gaps = 13/204 (6%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLAD 203 +R ++ + V+ D + +A G S I + + +H +RA+ D I+VG T+ D Sbjct: 2 ERPYVIIVSEVTIDGKLTLAKGVSSKEIMKLMDEEANKYLHQIRAECDGIMVGANTIRID 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRK 262 +P LT R ++ +P RII + LD+ I+ T + AP +I P + ++ Sbjct: 62 NPNLTVRY--VKGKNPTRIIPVSTGDIPLDANILNTEV-APTVIAVSKKAPAEKIEKLKE 118 Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K + +I D +L + L G+ L+VEGG+ V I + L+D I L +V+ Sbjct: 119 KGVQVIVAGNEKVDFAELFSKLYEMGIRKLMVEGGSKVNWELIKNDLIDEIRLIHLPVVV 178 Query: 321 GEGGIPSPLE-EGYLEKNFMCVRR 343 G +PS + EG+ K V+R Sbjct: 179 GGDDVPSLVSGEGF--KTLDAVKR 200 >gi|163782963|ref|ZP_02177958.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159881643|gb|EDP75152.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 223 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 108/220 (49%), Gaps = 13/220 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGM-AGCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVL 201 +E+R ++ + VS D + + G S + + + +H +RA+ D I+VG TV Sbjct: 2 MEQRPYVIIVSEVSIDGKLTLYRGASSKELMSLMDEEAYRYLHEIRAKVDGIMVGCETVR 61 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 D+P LT R ++ +P RII + LD+ ++ T +I TE D Sbjct: 62 TDNPSLTVRY--VKGKNPTRIIPCSTANVPLDANVLNTEDAPTIIATTERADKERVKKIE 119 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +K ++ + D LL L G+ +L+VEGGA++ F+ + VD I L ++ Sbjct: 120 EKGAKVVVAGDELVDFDLLLPKLYEMGIKTLMVEGGASINWEFVRRKKVDEIRLIHLPVI 179 Query: 320 IGEGGIPSPL-EEGYLE-KNFMCVR-RDYF--GSDVCLEY 354 +G +P+ + EG+ + K+ + +R R +F G+ + E+ Sbjct: 180 VGGENVPTLVGGEGFKKLKDILHLRLRSHFKRGNQLITEW 219 >gi|150399410|ref|YP_001323177.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus vannielii SB] gi|150012113|gb|ABR54565.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus vannielii SB] Length = 357 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 116/240 (48%), Gaps = 27/240 (11%) Query: 138 LHAYLTRQVEKRS--------HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++AY++R+V+ H+ + ++ D + S I+ +VH LR + Sbjct: 120 IYAYISRRVDIMPNFDDMLLPHVISNVGMTLDGKLATVSNDS-RISSENDLKRVHELRKE 178 Query: 190 SDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 D ILVGIGT+L DDP LT ++ + + +P+RI++D ++ + ++++ + A II Sbjct: 179 VDGILVGIGTILKDDPRLTVHKVPAVPKENPIRIVVDSSLRIPMTARVLNSD--AKTIIA 236 Query: 249 T------ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300 T E D+ + L + +I + +LK L+ L +G+ +L+EGG + Sbjct: 237 TTKPSSNEKDEKIRKLI--SMGVTVIQTGAKKVNLKDLMNELYKQGIKKILLEGGGTLNF 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYL---EKNFMCVRRDYFGSD-VCLEYI 355 L+ I +Y + + G P+ ++ EG+ + + ++ Y D + LEYI Sbjct: 295 GMFKENLISEIRVYVAPKIFGGSNAPTYVDGEGFKTVEDSPKLELKNHYILDDGIILEYI 354 >gi|238508822|ref|XP_002385594.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357] gi|220688486|gb|EED44839.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357] Length = 615 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 59/214 (27%), Positives = 97/214 (45%), Gaps = 44/214 (20%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL + E+R L +G +K H LR++ DAIL+G Sbjct: 367 FLEPYLPKYDERRMQTVL--------------------SGPEAKLMTHYLRSRHDAILIG 406 Query: 197 IGTVLADDPELTCRLNGLQEH-------SPMRIILDP--HFKLSLDSKIIKTAL----LA 243 +GTVLAD+P L CRL G P +I+DP + + + ++++TA+ A Sbjct: 407 VGTVLADNPGLNCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKA 466 Query: 244 PVIIVTENDD--PVLALAFRKKNINII----YCDCRDLK--KLLTILVGRGVTSLLVEGG 295 P ++V+ P + + + + Y L+ +L L GV S+++EGG Sbjct: 467 PWVVVSPGAQIHPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGG 526 Query: 296 AAVAHSFIN---SRLVDSIILYRSQIVIGEGGIP 326 V +N + +DSII+ + +G GG+P Sbjct: 527 GTVLSELLNPEYTEFIDSIIVTVAPTYLGSGGVP 560 >gi|254570505|ref|XP_002492362.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia pastoris GS115] gi|238032160|emb|CAY70110.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia pastoris GS115] gi|328353625|emb|CCA40023.1| hypothetical protein PP7435_Chr3-1080 [Pichia pastoris CBS 7435] Length = 243 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 105/216 (48%), Gaps = 34/216 (15%) Query: 137 FLHAYLTRQ---VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 FL ++ + + + +TL A S D+ I I+ +KN LR++ DAI Sbjct: 6 FLEPFIPHENTLLPELPFVTLTYAQSLDSRIAAKKGERTVISHQETKNMTQYLRSKHDAI 65 Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKL-----SLDSKIIKTALLA---P 244 LVG+ TVLADDP L C+L +P+R IILDP F+L SL K+IK L P Sbjct: 66 LVGVKTVLADDPGLNCKLG-----TPIRPIILDPTFQLLSKIASL--KLIKLGLSGEGEP 118 Query: 245 VIIVTEND--DPVLALAFRKK-NINIIYCDCRDLKK-------LLTILVGRGVTSLLVEG 294 + +T P L R I+I+ RD+ + +L IL + S++VEG Sbjct: 119 PVFITRKGVVSPDLQANLRSDYGISIVEIADRDVHRGKMSWFAILKILKDAEIHSVMVEG 178 Query: 295 GAAVAHSFINSR-----LVDSIILYRSQIVIGEGGI 325 GA + + + R LV S+I+ + +G+ G+ Sbjct: 179 GATIINDLLICRQNSVPLVASLIITVGPVYLGKDGV 214 >gi|330988983|gb|EGH87086.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 9/193 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFNDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R + +P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGR--NPIRIIPTTSLDLPASASIFKSPEKTIIATTEQARDHDMVKHIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 121 LFAGAKHVDFTRLFPMLEARGIKHIMVEGGGNLNWQVFNLDLVDEIILMQVPIIIGGAAT 180 Query: 326 PSPLE-EGYLEKN 337 + + EGY + N Sbjct: 181 ATLADGEGYRDIN 193 >gi|327393622|dbj|BAK11044.1| diaminohydroxyphosphoribosulpyrimidine deaminase ribD [Pantoea ananatis AJ13355] Length = 124 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 57/113 (50%), Gaps = 1/113 (0%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 V C+IV DG V+ +G T G HAE+ A+ + YVTLEPCS GR+P CA Sbjct: 7 VGCVIVHDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISECEIYVTLEPCSFQGRTPSCAL 66 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYL 142 I E + + + +DDP + G G L + GI + + + FL YL Sbjct: 67 TIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGISFTSGIGKQAVEKFLFPYL 119 >gi|149194180|ref|ZP_01871278.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus TB-2] gi|149136133|gb|EDM24611.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus TB-2] Length = 326 Score = 69.7 bits (169), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 62/216 (28%), Positives = 93/216 (43%), Gaps = 36/216 (16%) Query: 24 LTSTNPSV-ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------------------- 63 LT NP+V A L++K+ + + A G PHAEV L +A Sbjct: 23 LTYPNPAVGASLVIKNKVFVSAHKKA--GSPHAEVNVLWDAFSFFHKTPKFTDSFEIHEY 80 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A +VTLEPCSH G++P CA + + V + + DP SG G++ Sbjct: 81 LIKHHNNFFNEAEMFVTLEPCSHIGKTPSCANLLKVLKPKSVTIGIKDPIKSHSG-GVEI 139 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L GI V+ + + + ++ + K I K+A S + I S Sbjct: 140 LKNAGIEVNLLNDKRCFDLIEPFI--KWSKDKFIFFKLAQSFNGAITGGYISSED----- 192 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNG 213 S N VH +R + D +++G TV D P L R+NG Sbjct: 193 SLNWVHKVRDKIDLLVIGGNTVRIDRPTLDARRVNG 228 >gi|298485418|ref|ZP_07003506.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160054|gb|EFI01087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R ++ P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGRD--PIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG G Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179 Query: 326 PSPLEEG 332 + L +G Sbjct: 180 TATLADG 186 >gi|297526352|ref|YP_003668376.1| bifunctional deaminase-reductase domain protein [Staphylothermus hellenicus DSM 12710] gi|297255268|gb|ADI31477.1| bifunctional deaminase-reductase domain protein [Staphylothermus hellenicus DSM 12710] Length = 225 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 90/184 (48%), Gaps = 13/184 (7%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 ++H R+ DA++VG TV+ DDP LT RL + P R+++D ++ + ++ T Sbjct: 35 RLHYFRSIVDAVMVGANTVIIDDPLLTVRLPDYKGKQPYRVVVDGKLRVMPELRVFDTR- 93 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLL 291 AP I++T N D + F + + I++ D DL+K + L + +L Sbjct: 94 HAPTILITSINNKDREMIRRFLSRGVRILFVDTDKYDPSKIDLRKAVEKLYREFSIRKIL 153 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGG + S +RL+D + L S ++IG + L E +L+ V ++ F + Sbjct: 154 VEGGGQLIASLFKNRLIDELYLSISPLIIGLNK--TSLIEDFLDSPVRLVLKNIFVDHIT 211 Query: 352 LEYI 355 E I Sbjct: 212 GEII 215 >gi|114798109|ref|YP_758764.1| riboflavin biosynthesis protein RibD domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738283|gb|ABI76408.1| riboflavin biosynthesis protein RibD N-terminal domain protein [Hyphomonas neptunium ATCC 15444] Length = 152 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/116 (47%), Positives = 72/116 (62%), Gaps = 3/116 (2%) Query: 14 ALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72 A + +R + GLT NPSV CLI+ G + G GVT GG PHAE AL+EA +A G TA Sbjct: 16 AFQLARLNHGLTGKNPSVGCLILDARGHIAGAGVTGTGGAPHAEEVALDEAAGKAAGGTA 75 Query: 73 YVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 YVTLEPC +P CA+ ++E GI RVVV ++DP + GL L + G+ V+ Sbjct: 76 YVTLEPCRERSSGAPSCARKLVEAGIARVVVAIEDPHP-TARDGLAILREAGVRVE 130 >gi|320323039|gb|EFW79128.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329689|gb|EFW85678.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330882190|gb|EGH16339.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 224 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R + +P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG G Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179 Query: 326 PSPLEEG 332 + L +G Sbjct: 180 TATLADG 186 >gi|302546634|ref|ZP_07298976.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302464252|gb|EFL27345.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 272 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 22/210 (10%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++ S D I + +TG + +H LRA +DA++VG GT LADDP+LT R Sbjct: 66 QLGQSLDGFIATRTGDADYVTGEEDRCHLHRLRALTDAVVVGAGTALADDPQLTVR--AC 123 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV--TENDDPVLALAFRKKNINIIYCDC 272 P+R+ILDPH ++ ++ T AP + V E D A ++++ Sbjct: 124 SGPHPVRVILDPHGRVPPHRRVF-TDGSAPTLWVVGAETGDGRTA----PDGVDVLTLPD 178 Query: 273 RDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326 R ++L+ L RG+ +L+EGG F++ + + + + +++G+ GIP Sbjct: 179 RAAFAPQRLVEALAARGLGRVLIEGGGVTVSRFLHDGALHRLYVTVAPVLLGD-GIPGLR 237 Query: 327 ---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +P+ L RR G D E Sbjct: 238 FDGTPVMRDALRPR---TRRARLGEDTLFE 264 >gi|12229926|sp|Q9P4B8|RIB7_KLUMA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|9651717|gb|AAF91239.1|AF225206_5 riboflavin biosynthesis protein [Kluyveromyces marxianus] Length = 249 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 69/215 (32%), Positives = 101/215 (46%), Gaps = 22/215 (10%) Query: 137 FLHAYL---TRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL R +K + ++ L A S D+ I I+ +K H LR + DA Sbjct: 13 FLEPYLPDEERDADKEKPYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDA 72 Query: 193 ILVGIGTVLADDPELTCRL---NGLQEH----SPMRIILDPHFKLSL-DSKIIKTALL-- 242 I++G GTV+ DDP L C+ + EH SP IILDP+ K DSK+ K Sbjct: 73 IMLGCGTVMIDDPGLNCKWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGD 132 Query: 243 --APVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 AP+I+V E +P + + N + D +L L + V S++VEGG V Sbjct: 133 GKAPIIVVKELPSEPEEGVDYLVMRTN--FTGKMDWSDMLVQLKSKFNVKSVMVEGGGIV 190 Query: 299 AHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331 + + LVD++I+ +G G+ SPL E Sbjct: 191 INDLLQRPNLVDALIITLGATFLGSEGVEVSPLVE 225 >gi|296411775|ref|XP_002835605.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629391|emb|CAZ79762.1| unnamed protein product [Tuber melanosporum] Length = 259 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 97/202 (48%), Gaps = 39/202 (19%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +TL A S D+ + + P++G +K+ H LR DAILVG+GT + DDP L RL Sbjct: 28 LTLTYATSLDSHLSIP-LTQFPLSGPETKSLTHHLRTFHDAILVGVGTAVVDDPGLNSRL 86 Query: 212 NGLQ-EHSPMRIILDPHFK--LSLDSKIIKTAL----LAPVIIV-----TENDDP----- 254 G P +ILDP F+ ++ +S++++TA LAP + V + D+ Sbjct: 87 PGTPLTRQPRPVILDPAFRWGVTRESRVVQTAKRGEGLAPYVFVRSEVEIDGDERRGILE 146 Query: 255 --------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303 + L R+ + +++ R G+ S++VEGG V + + Sbjct: 147 EVGGKVVVIETLGKRRWSWDVLSEKMRAF----------GLNSVMVEGGGGVINDLLAEG 196 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 N VDS+I+ + +G+GG+ Sbjct: 197 NLPHVDSVIVTVAPTYLGQGGV 218 >gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299] gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299] Length = 639 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 84/339 (24%), Positives = 132/339 (38%), Gaps = 31/339 (9%) Query: 23 GLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 GL +P C+++ G V+ R G +EV A+ EAG A G AY+ LEP Sbjct: 47 GLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAVREAGARADGGVAYLNLEPAHG 106 Query: 82 YGRSPPCA-QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 A ++ + RVVV + P V G+ + L G+ VD + E + A Sbjct: 107 PAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAALRDAGVRVDVLGEFTSRFTSAA 166 Query: 141 ---------------------YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 L R R K A++ D I S +TG + Sbjct: 167 DERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAMTVDGKIATTSGHSAWVTGPAA 226 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + QV RA+SDA++VG TV D+P LT R +G H P RI+ + +L T Sbjct: 227 RQQVWAERARSDAVVVGGTTVRRDNPNLTTRRDG--GHRPARIVRVRKPRTNL----WNT 280 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +++ R + ++ D + RG L E G +A Sbjct: 281 DEANTIVMTVAGARREFQAELRALGVEVVEFDELTPGAVADYCAKRGYLQLFWECGGGLA 340 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEK 336 + + ++ + + ++G G PSP+ E LE+ Sbjct: 341 GPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVGETGLER 379 >gi|297155044|gb|ADI04756.1| bifunctional deaminase-reductase-like protein [Streptomyces bingchenggensis BCW-1] Length = 361 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 26/224 (11%) Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 GL+W + + E +I YL + ++ S D I + + Sbjct: 33 GLRWRQE--------VSPEVRILTDRYLPLCLAGPRLAVAQLGQSLDGFIATRTGDADYV 84 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 TG + +H LRA DA++VG GT +ADDP+LT R +P+R++LDPH ++ Sbjct: 85 TGEEDRAHLHHLRALVDAVVVGAGTAVADDPQLTVR--ACTGTNPVRVVLDPHGRVPSQR 142 Query: 235 KIIKTALLAPVIIVT--------ENDDPVLALAFRKK----NINIIYCDCR---DLKKLL 279 ++ AP + V EN + + R + +++++ R + + LL Sbjct: 143 RVFIDG-SAPTLWVVAADSGRGGENGSVGVDGSGRHRGLGAHVDVLTLPDRAAFEPRSLL 201 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L RG+ +L+EGG F++ R +D + + + +++G+G Sbjct: 202 DALARRGLGRVLIEGGGVTVSRFLHQRALDRLYVTVAPVLLGDG 245 >gi|330944605|gb|EGH46556.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R + +P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKNIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG G Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179 Query: 326 PSPLEEG 332 + L +G Sbjct: 180 TATLADG 186 >gi|28868061|ref|NP_790680.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851297|gb|AAO54375.1| ribD C-terminal domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018395|gb|EGH98451.1| ribD C-terminal domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 224 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R + +P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKHIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG G Sbjct: 121 LFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179 Query: 326 PSPLEEG 332 + L +G Sbjct: 180 TATLADG 186 >gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f. nagariensis] gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f. nagariensis] Length = 547 Score = 68.6 bits (166), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 92/323 (28%), Positives = 144/323 (44%), Gaps = 14/323 (4%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G+T +P++AC++V DG I G AEV A+ AG ARGATAY+ LE Sbjct: 1 GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL--- 138 +G ++ G+ RVVV + P + R + L D + + Sbjct: 61 HGEM-AAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFDGDDATSAAAYGAMSAC 119 Query: 139 ----HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 A L R V +R LK A++ D I S ++ S+ V +RA+SDA++ Sbjct: 120 LAANEALLHRSVLRRPLGVLKYAMTLDGKIATNIGHSSWVSSPQSRGLVFEMRARSDAVI 179 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV D+P LT R G H+P RI++ L D+ + LAP I++T+ Sbjct: 180 VGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPEDANLWDVT-LAPTIVLTQRGAR 236 Query: 255 V-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A R + ++ D + + RG E G +A I S +V ++ Sbjct: 237 TRFQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAPTIASGVVHKVMA 296 Query: 314 YRSQIVIGEGGIPSPLEE-GYLE 335 + + +IG P+P+ E G++E Sbjct: 297 FVAPKIIGGVRAPTPVGELGFVE 319 >gi|50311993|ref|XP_456028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|54036251|sp|Q6CJ61|RIB7_KLULA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49645164|emb|CAG98736.1| KLLA0F21120p [Kluyveromyces lactis] Length = 252 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/223 (28%), Positives = 96/223 (43%), Gaps = 36/223 (16%) Query: 137 FLHAYLTRQV-----EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 FL Y+ +++ ++ L A S D I I+ + H LR + D Sbjct: 13 FLEPYMPENAGVLGEQEKPYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFD 72 Query: 192 AILVGIGTVLADDPELTCRL--------NGLQEHSPMRIILDPHFKLSLDSKIIKTAL-- 241 I++G GTVL DDP L C+ EHSP IILDP+ K + +KT Sbjct: 73 GIMLGCGTVLVDDPGLNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDS 132 Query: 242 ---LAPVIIVT-------EN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 AP+++V EN D V+ F K D DL + + G+ S+ Sbjct: 133 GDGKAPIVVVKKLPEVVEENVDYLVMQTNFTGK------VDWHDL--FIQLKSQFGLKSI 184 Query: 291 LVEGGAAVAHSFIN-SRLVDSIILYRSQIVIGEGGIP-SPLEE 331 +VEGG V + + L+D++++ +G G+ SPL E Sbjct: 185 MVEGGGIVINDLLQRPHLIDALVITVGATFLGSEGVEVSPLIE 227 >gi|76801978|ref|YP_326986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas pharaonis DSM 2160] gi|76557843|emb|CAI49427.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas pharaonis DSM 2160] Length = 219 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 12/187 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 +T+ A+S D + + I+G +++ LRA DA+LVG+GTVLAD+P L Sbjct: 2 DVTVNAAMSADGKLSSRRREQIAISGDADFERMYRLRAAVDAVLVGVGTVLADNPSLRSH 61 Query: 208 ----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFRK 262 + G P R++ D + D+ I+ A ++T P A R+ Sbjct: 62 DEAHRAEVYGPDADPPARVVADSACRTPPDADIL--AGEPDTYVLTSGAAPEDRRAALRE 119 Query: 263 KNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +I D L L RG+ L+VEGG + S + LVDS+ +Y +VI Sbjct: 120 AGAELIVTDGDRVSLSTAFAELAARGIDRLMVEGGGELIFSLFEAGLVDSLSVYIGDLVI 179 Query: 321 GEGGIPS 327 G P+ Sbjct: 180 GGRDAPT 186 >gi|302348951|ref|YP_003816589.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15] gi|302329363|gb|ADL19558.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15] Length = 215 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 56/168 (33%), Positives = 84/168 (50%), Gaps = 16/168 (9%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241 H LRA SDA+LVG T + D+P LT R +P+R+++D K+ +LD I Sbjct: 36 HELRAWSDAVLVGANTAIKDNPSLTVR--KAVGKNPLRVVVDASLKVPPTLDMFSIPGK- 92 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298 VII TE+ + ++++ I II DL+ + L GV L++EGG Sbjct: 93 --GVIITTEDHNGEELAKYKERGIVIIRAGVGPEVDLRTAVRALFEMGVRRLMIEGGGTT 150 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYL-EKNFMC 340 ++ F+ LVD + + S IV G G G S L++ YL E +C Sbjct: 151 SYRFLKEGLVDELWITLSPIVFGSGTSIINGERSLLQDLYLRELKVLC 198 >gi|325968187|ref|YP_004244379.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Vulcanisaeta moutnovskia 768-28] gi|323707390|gb|ADY00877.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Vulcanisaeta moutnovskia 768-28] Length = 219 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 51/162 (31%), Positives = 77/162 (47%), Gaps = 17/162 (10%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 ++H +RA DAI+VG TV+ DDP LT R ++ P+R+I+D ++ L +K+I Sbjct: 35 RLHEVRASVDAIMVGANTVINDDPSLTPRYVKAIKN-PIRVIIDGKLRIPLTAKVITNKE 93 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIY-----CDCRD-LKKLLTILVGRGVTSLLVEGG 295 +I+ TE D + + + RD L+KL T +GV +LVEGG Sbjct: 94 APTIIVTTEQSDRNKTAQLMNMGVEVWVMGKERVNLRDVLEKLFT---EKGVKRVLVEGG 150 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLE 330 + I + D I L S V G G G P+ +E Sbjct: 151 GHLNWELIKEEIADEIRLTISPYVFGAGTSFIEGEGYPTTME 192 >gi|220920297|ref|YP_002495598.1| bifunctional deaminase-reductase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219944903|gb|ACL55295.1| bifunctional deaminase-reductase domain protein [Methylobacterium nodulans ORS 2060] Length = 255 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 6/172 (3%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + ++ S D I S I + + +H LRA DAI+VGIGTVLADDP LT R Sbjct: 48 VIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPRLTVRR 107 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271 + SP RI++DP ++ ++ ++ + I+V D + A A + + I + Sbjct: 108 --VAGRSPARIVIDPAGRIPAQAQCLREDGVR-RIVVCRPDTRIPACA---EALRIEAPE 161 Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + L++ L G +L+EGGA FI++ +D + L + +++G G Sbjct: 162 AFPPQALVSALGRLGFRRILIEGGARTISGFIDAGAIDRLHLMVAPLLLGSG 213 >gi|237653124|ref|YP_002889438.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T] gi|237624371|gb|ACR01061.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T] Length = 290 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/199 (26%), Positives = 90/199 (45%), Gaps = 5/199 (2%) Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 R + ++ L +L ++ S D I A S I ++ +H LR Sbjct: 49 RALRADTAELLDLFLPWVARPGRLAIAQLGQSLDGRIATASGASHYINCLEARTHLHRLR 108 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A DA++VG+GTV ADDP+LT R + +P+R++LDP + D+++ + V + Sbjct: 109 ALVDAVVVGVGTVNADDPQLTVRH--VAGRNPVRVVLDPRGRARADARLFQDGAAPTVHL 166 Query: 248 VTENDDPVLA--LAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V E+ P A L R + + +L L G +LVEGG F+ Sbjct: 167 VGEDLAPGTAAVLPGRVARAGLPGAGSGFEPGAVLDWLARAGCRRVLVEGGGHTVSRFVQ 226 Query: 305 SRLVDSIILYRSQIVIGEG 323 + ++ + L + ++IG G Sbjct: 227 AGAIERLHLLVAPLLIGSG 245 >gi|183220792|ref|YP_001838788.1| riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910892|ref|YP_001962447.1| pyrimidine deaminase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775568|gb|ABZ93869.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779214|gb|ABZ97512.1| Riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 430 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 15/205 (7%) Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGATA----- 72 +G T NP V+ ++ G I + T G HAE + +E+ ++ T Sbjct: 21 MGKTGGNPPVSAVLTNSIGEPIEKAHTQGYGGNHAERELYSLVEQKHSHSQIQTDENSLS 80 Query: 73 ----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWLSQ-KGIIV 126 V+LEPC+H+G++PPC +++ + +++ DP+ V SG +L Q + + Sbjct: 81 DTILSVSLEPCTHFGKTPPCRDLVLQHKPKELLLGWKDPNPMVQSGDWKLYLEQGTKVRL 140 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 D M+ + +L +L R + + +K A S + ++ + LL Sbjct: 141 DPMLANTSLPYLQGFLKRMQTGKPWVWIKSATSTEGNYVSKSFTKERVSSIEMDLYLQLL 200 Query: 187 RAQSDAILVGIGTVLADDPELTCRL 211 RA+ DA+ VG T D+P L R+ Sbjct: 201 RAKFDAVAVGPNTTKVDEPSLHFRI 225 >gi|190408694|gb|EDV11959.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomyces cerevisiae RM11-1a] gi|323356098|gb|EGA87903.1| Rib7p [Saccharomyces cerevisiae VL3] Length = 244 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/206 (32%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+IL +G G Sbjct: 187 NQLLLRSDIVNSLILTIGSTFLGSSG 212 >gi|6319629|ref|NP_009711.1| Rib7p [Saccharomyces cerevisiae S288c] gi|465506|sp|P33312|RIB7_YEAST RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|396753|emb|CAA50471.1| unnamed protein product [Saccharomyces cerevisiae] gi|536482|emb|CAA85112.1| RIB7 [Saccharomyces cerevisiae] gi|642227|emb|CAA79746.1| HTP reductase [Saccharomyces cerevisiae] gi|45269317|gb|AAS56039.1| YBR153W [Saccharomyces cerevisiae] gi|285810483|tpg|DAA07268.1| TPA: Rib7p [Saccharomyces cerevisiae S288c] Length = 244 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+I+ +G G Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212 >gi|323338689|gb|EGA79905.1| Rib7p [Saccharomyces cerevisiae Vin13] Length = 244 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+IJ +G G Sbjct: 187 NQLLLRSDIVNSLIJTIGSTFLGSSG 212 >gi|207347626|gb|EDZ73736.1| YBR153Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 218 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 93/206 (45%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+IL +G G Sbjct: 187 NQLLLRSDIVNSLILTIGSTFLGSSG 212 >gi|289623948|ref|ZP_06456902.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 113 Score = 67.8 bits (164), Expect = 3e-09, Method: Composition-based stats. Identities = 43/113 (38%), Positives = 61/113 (53%), Gaps = 1/113 (0%) Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQV 146 CA ++ G+ RVV + DP+ VSGRGL L GI V ++ESE + +L R Sbjct: 1 CADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGVLESEARALNKGFLKRME 60 Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 + +I +K+A+S D MA S ITG +++ V LRAQS +L G T Sbjct: 61 TGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQSSVVLTGADT 113 >gi|71737585|ref|YP_275900.1| riboflavin biosynthesis protein RibD domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558138|gb|AAZ37349.1| RibD C-terminal domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 217 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 9/187 (4%) Query: 152 ITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADDPEL 207 +T+ +S D + M G S P+ + +H R + DAI+VG T++ DDP+L Sbjct: 3 VTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDPQL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 T R + +P+RII L + I K+ + + D + R + Sbjct: 63 TNRYESGR--NPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGKEV 120 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG G Sbjct: 121 LFAGAKHVDFTRLFPMLEVRGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG-GAA 179 Query: 326 PSPLEEG 332 + L +G Sbjct: 180 TATLADG 186 >gi|18313740|ref|NP_560407.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum aerophilum str. IM2] gi|18161296|gb|AAL64589.1| riboflavin specific deaminase, putative [Pyrobaculum aerophilum str. IM2] Length = 227 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 8/178 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L AV+ D I + G ++ ++H LRA+ DA++VG T + D+P LT Sbjct: 2 RPYVYLMAAVTIDGRIA-SKSGYSRLSCPHDLKRLHALRAEVDAVIVGANTAIIDNPRLT 60 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267 R +P R+++D + +I AP I+ T N P + R+ I + Sbjct: 61 VRYAA--GRNPTRVLIDGALRAPTTLRIFDKT--APTIVYTTNLAPAEKINELRRLGIEV 116 Query: 268 IYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + D +L+ L RGV +L+EGG FI+ LVD +I+ + V G G Sbjct: 117 VVFPSHRVDPASVLSDLYNRGVRKVLIEGGGRTNWEFISKCLVDEVIVTVTPYVFGSG 174 >gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group] Length = 401 Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 51/204 (25%), Positives = 95/204 (46%), Gaps = 6/204 (2%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 ++ D I + + ++G S+ +V LR +SDAI+VG TV DDP LT R ++ H Sbjct: 1 MTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGH 58 Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277 P+RI++ L ++ + ++ L K + ++ D + + Sbjct: 59 VPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRD 118 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 +++ RG S+L E G +A S I++ ++ + + + +IG P+P+ G L N Sbjct: 119 VMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPV--GELGMN 176 Query: 338 FMCVRRDYFGSDVCLEYIGKNLCL 361 M D DV E I +++ + Sbjct: 177 QMTQAIDLI--DVSYEQIDRDMLM 198 >gi|225847913|ref|YP_002728076.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644623|gb|ACN99673.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium azorense Az-Fu1] Length = 221 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 92/186 (49%), Gaps = 10/186 (5%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203 KR + + V+ D + +A G S I F+ + +H RA+ D I+VG T+ D Sbjct: 2 KRPYTIIISEVTVDGKLTLAKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRTD 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P LT R ++ +P RII + LD+ ++K AP II+T P + + Sbjct: 62 NPYLTVRY--VKGKNPTRIIPTSTADIPLDANVLKKD--APTIIITTEKAPEEKIKALSE 117 Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + ++ + DL K++ L RG+ +L+VEGG+ + + +N LVD I + ++G Sbjct: 118 KVEVVKIGDEKVDLIKMMDFLYNRGIRTLMVEGGSTLNWNLLNLGLVDEIRIIHMPFIVG 177 Query: 322 EGGIPS 327 P+ Sbjct: 178 GTDTPT 183 >gi|323305972|gb|EGA59707.1| Rib7p [Saccharomyces cerevisiae FostersB] Length = 244 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLXNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+IJ +G G Sbjct: 187 NQLLLRSDIVNSLIJTIGSTFLGSSG 212 >gi|256270197|gb|EEU05420.1| Rib7p [Saccharomyces cerevisiae JAY291] gi|290878168|emb|CBK39227.1| Rib7p [Saccharomyces cerevisiae EC1118] gi|323334602|gb|EGA75976.1| Rib7p [Saccharomyces cerevisiae AWRI796] Length = 244 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+I+ +G G Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212 >gi|237751530|ref|ZP_04582010.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879] gi|229372896|gb|EEO23287.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879] Length = 397 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/257 (26%), Positives = 102/257 (39%), Gaps = 66/257 (25%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63 M AL ++ LT NP V L++ D +I G PHAEV A +EA Sbjct: 1 MRIALDYAWSFQTLTLPNPCVGSLVLCDNTIIALQTHKKAGSPHAEVLACKEAFLYKITH 60 Query: 64 GEEARGA------------------------------------TAY-----------VTL 76 E A+ A TAY VTL Sbjct: 61 DEVAKRAVLESCKKQGLNKDNILSYLINTLQNMQDSKHIHEFITAYHSGIFHNCEFFVTL 120 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 EPC+HYG++PPCA+ + +R+++ +D + SG G L+ I ++ E Sbjct: 121 EPCNHYGKTPPCAELLKTIAPKRIIIAHEDSTPKASG-GANTLAHIP-ITHGILRDEAHK 178 Query: 137 FLHAYLTRQVEKRSHITLKIA--VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L +L Q +KR+ KIA + D G+ I+ S+ H +R +D I+ Sbjct: 179 LLFPFLQWQ-KKRNFTLFKIAHRLHGDYKNGI-------ISNEDSRIFTHNMRCIADYII 230 Query: 195 VGIGTVLADDPELTCRL 211 + T+ D+P L R Sbjct: 231 ISGATLRDDNPLLDTRF 247 >gi|323349752|gb|EGA83967.1| Rib7p [Saccharomyces cerevisiae Lalvin QA23] Length = 244 Score = 66.6 bits (161), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+I+ +G G Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212 >gi|323310096|gb|EGA63290.1| Rib7p [Saccharomyces cerevisiae FostersO] Length = 244 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLRNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 ILVG GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+I+ +G G Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212 >gi|149916459|ref|ZP_01904977.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. AzwK-3b] gi|149809630|gb|EDM69485.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. AzwK-3b] Length = 275 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 100/208 (48%), Gaps = 20/208 (9%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 +I S D I + ++G +H +RA D +++G+ T L D P LT RL Sbjct: 55 QIGQSLDGRIATVTGDARDVSGPDGLAHLHRMRALVDGVVIGVRTALHDSPRLTVRL--C 112 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR- 273 + +P RI++DP +L D+ +++ A I++ D P R + +I + R Sbjct: 113 KGPNPARIVIDPRGRLPDDAPLLR-ADGTRRIVIQAVDRP------RPAGVEVIRLNDRE 165 Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIP 326 D ++L+ L +G+++L++EGG F+ +R + + + + ++IG G +P Sbjct: 166 SLLDPAQILSALRAKGLSTLMIEGGGITISRFLEARRLTRLQVAVAPLLIGAGPQGLTMP 225 Query: 327 SPLEEGYLEKNFMCVRRDY-FGSDVCLE 353 SP E+ L R + GSDV + Sbjct: 226 SPTEK--LSDAIRPQTRAFSLGSDVVFD 251 >gi|151946542|gb|EDN64764.1| diaminohydroxyphoshoribosylaminopyrimidine deaminase [Saccharomyces cerevisiae YJM789] Length = 244 Score = 66.2 bits (160), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 64/206 (31%), Positives = 96/206 (46%), Gaps = 24/206 (11%) Query: 137 FLHAYLTR--QVEKR--SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL YL Q E +TL A S D + I+ +K H LR D Sbjct: 13 FLQNYLPNAGQTENTIVPFVTLTYAQSLDARVSKGPGVRTIISHPETKTMTHYLRHHHDG 72 Query: 193 ILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVI 246 IL+G GTVLAD+P L C+ +SP II+D K D SK+ IK P++ Sbjct: 73 ILIGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIV 132 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTSLLVEGGAAVA 299 +VT +P++ ++++++ C D KKL IL + S++VEGGA V Sbjct: 133 VVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVI 186 Query: 300 HS-FINSRLVDSIILYRSQIVIGEGG 324 + + S +V+S+I+ +G G Sbjct: 187 NQLLLRSDIVNSLIITIGSTFLGSSG 212 >gi|301093219|ref|XP_002997458.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262110714|gb|EEY68766.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 149 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 65/123 (52%), Gaps = 5/123 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAG 64 D FM A+ + H S N V C++V+DG+V+ G + G HAE AL + Sbjct: 8 DVAFMRLAV--AEAHRSQPSENAYCVGCVVVRDGLVLSTGFSRELPGNTHAEQVALHKLN 65 Query: 65 EEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 EA+GAT Y T+EPCS + PC Q + G+ RVV+ V +P V +G+Q L + Sbjct: 66 FEAQGATVYTTMEPCSTRVSGNVPCVQSCLRAGVARVVIGVMEPKTFVICKGVQLLQEAR 125 Query: 124 IIV 126 + V Sbjct: 126 VDV 128 >gi|162456661|ref|YP_001619028.1| riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce 56'] gi|161167243|emb|CAN98548.1| Riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce 56'] Length = 187 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 4/119 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGG---CPHAEVQ 58 +S+ ++M A+ + G T NP V C IV G ++G G T G A + Sbjct: 1 MSNDPEKWMRLAIEEAERARGGTGDNPWVGCAIVSAAGELLGSGHTLGPGEDHAEIAAAR 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G GAT Y TLEPCS +GR+P C++ I+E G+ RVV+ ++DP+ RV G G++ Sbjct: 61 AAHARGLSVVGATLYSTLEPCSFHGRTPACSRSIVERGVARVVIGMNDPNPRVDGEGVR 119 >gi|222478886|ref|YP_002565123.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Halorubrum lacusprofundi ATCC 49239] gi|222451788|gb|ACM56053.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Halorubrum lacusprofundi ATCC 49239] Length = 236 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 24/208 (11%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 H+ + A S D + + I+G ++V +RA +DA+LVG+GTVLADDP LT Sbjct: 2 HVVVNAAQSVDGKLATRRREQLRISGPEDFDRVDRVRAAADAVLVGVGTVLADDPHLTLD 61 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 RL + +P R+++D + D++I+ A ++V+ + P A Sbjct: 62 EEDRRVERLRNGRPGNPARVVVDSTGRTPTDARILDDAATT-YLLVSASAPPERREALAA 120 Query: 263 KNINIIYC--------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 ++ D DL + L RG+ L+VEGG V +S + LV Sbjct: 121 AGAEVVVVEGGSGTERESESDGDHVDLVAGIHALAERGIDRLMVEGGGEVIYSCFAAGLV 180 Query: 309 DSIILYRSQIVIGEGGIPSPLE-EGYLE 335 D + +Y +VIG P+ + EG+ E Sbjct: 181 DELHVYVGSMVIGGRDAPTLADGEGFTE 208 >gi|302529252|ref|ZP_07281594.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4] gi|302438147|gb|EFL09963.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4] Length = 371 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 92/200 (46%), Gaps = 23/200 (11%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R H+ L A S D + AG + ++ +V LRA++DAILVG GTV AD+P L Sbjct: 7 RPHVLLSAAQSLDGYLDDAGSTRLLLSNEDDFAEVDRLRAEADAILVGAGTVRADNPRLL 66 Query: 209 CRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALA 259 R L+ P+++ + KL S+ ++ D + A+A Sbjct: 67 VRSAELRRARVAAGRPEQPVKVTVTSSGKLDPASRFFTLGDTEKLVYAPRGSADSLSAVA 126 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + + R L+ +L L RG+ +LLVEGG AV F+++ L D + L + ++ Sbjct: 127 ----TVVEVGSPPR-LESVLDDLGARGIRTLLVEGGGAVHTQFLDAGLADELRLAIAPVM 181 Query: 320 IGE---------GGIPSPLE 330 +G+ G P PLE Sbjct: 182 VGDPRAPRFLGPGAFPRPLE 201 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 5/97 (5%) Query: 32 ACLIVKDGIVIGRGVTAYGGC-PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP- 86 A + + DG V+ G + G HAE AL + AT Y +LEPCS P Sbjct: 250 AVVGLPDGTVLATGHSGEGDPHNHAEESALAKLDPHDPRLADATMYSSLEPCSDRASHPK 309 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 C Q I+E I RVV+ +P + V G++ L G Sbjct: 310 SCTQLILETAIPRVVMAWREPSLFVEAEGVERLMAAG 346 >gi|323705214|ref|ZP_08116790.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] gi|323535640|gb|EGB25415.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] Length = 137 Score = 65.9 bits (159), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 64/123 (52%), Gaps = 15/123 (12%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++VKDGI+IGRG T HAE+ A+++A + GA+ YVTLEPC Sbjct: 19 VGAVVVKDGIIIGRGYNLKETEKDATQHAEINAIKDACKSIGDWRLNGASLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 P CA IIE I+RV V + D +G L++K + +ME E K ++ + Sbjct: 77 ----PMCAGAIIESRIKRVYVGAESRDNGAAGTVYDLLNKKAEVYFGIMEDECKKLINDF 132 Query: 142 LTR 144 +R Sbjct: 133 FSR 135 >gi|126734556|ref|ZP_01750302.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. CCS2] gi|126715111|gb|EBA11976.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. CCS2] Length = 277 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 49/170 (28%), Positives = 83/170 (48%), Gaps = 8/170 (4%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 +I S D I + ++G +H LRA +DA+++G+ T L DDP+LT RL Sbjct: 55 QIGQSLDGRIATETGDAQDVSGEDGLAHLHRLRALADAVVIGVKTALHDDPQLTVRLA-- 112 Query: 215 QEHSPMRIILDPHFKLSLDSKII-KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273 SP R+++DP +L D++++ T+ VI + P A + I Sbjct: 113 DGTSPARVVIDPDGRLPNDARLLTDTSARRIVIQAVAKERPAGVEAITLSRASWIAP--- 169 Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + +L L RG S+L+EGG F+ + L++ + L + ++IG G Sbjct: 170 --EDILGALQERGFKSILIEGGGITITQFLEADLLNRLHLAIAPLLIGSG 217 >gi|85702872|ref|ZP_01033976.1| riboflavin specific deaminase, putative [Roseovarius sp. 217] gi|85671800|gb|EAQ26657.1| riboflavin specific deaminase, putative [Roseovarius sp. 217] Length = 237 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 93/210 (44%), Gaps = 18/210 (8%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ +I S D + + ++G +H +RA DA++VG+ T L DDP LT R Sbjct: 15 HVVAQIGQSLDGRVATVSGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALQDDPRLTVR 74 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDP--VLALAFRKKNINI 267 L Q +P R+++DP +L D+++ V+I T E P V + + Sbjct: 75 LVAGQ--NPARVVIDPSGRLPNDARLFADDGARRVVIQTVEKSRPAGVEVITLPRSQWIS 132 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 L+KL G+ LLVEGGA FI + L+ + + + ++IG G P Sbjct: 133 PAAIVAALRKL-------GLNHLLVEGGAITIARFIEADLLSRLHVAVAPLLIGAG--PQ 183 Query: 328 PLEEGYLEKNFMCVRRDY----FGSDVCLE 353 L + K R + GSDV + Sbjct: 184 GLTTQPIAKLAQARRPETQVYGLGSDVVFD 213 >gi|307083979|ref|ZP_07493092.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis SUMu012] gi|308366346|gb|EFP55197.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis SUMu012] Length = 206 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 64/226 (28%), Positives = 98/226 (43%), Gaps = 35/226 (15%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L +L +Q H+T K A S D A S I+ ++ +H RA +DAILVG Sbjct: 9 LREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRAIADAILVGT 68 Query: 198 GTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GTVLADDP LT RL L P+R ++V + D P Sbjct: 69 GTVLADDPALTARLADGSLAPQQPLR------------------------VVVGKRDIPP 104 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + + ++L L R T +L+EGG +A +F+ + ++ I+ Y Sbjct: 105 EARVL-NDEARTMMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAYV 161 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + I++G G + + + G N R F S +E +G +L L Sbjct: 162 APILLG-GPVTAVDDVGV--SNITNALRWQFDS---VEKVGPDLLL 201 >gi|167044799|gb|ABZ09467.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG8D6] Length = 217 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 7/187 (3%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + A++ D + G ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 5 RPRVIFSAAITLDGKLA-TRSGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKFDDPLLS 63 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINI 267 ++ +++ +P+RIILD + +S S+I+KT P IIV L K + + Sbjct: 64 --VHNIKKKNPIRIILDSNATISSSSRILKTCSKIPTIIVVSKKAQKKNLQKLEKFPVQV 121 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G G Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG-GMT 180 Query: 326 PSPLEEG 332 + L +G Sbjct: 181 STTLVDG 187 >gi|21672711|ref|NP_660778.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091137|sp|Q8K9A3|RIBD2_BUCAP RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|21623354|gb|AAM67989.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 217 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/217 (27%), Positives = 98/217 (45%), Gaps = 19/217 (8%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 +S D I M S IT S+ V RA+S AIL T+L DDP L R ++ Sbjct: 1 MSIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKN 60 Query: 218 S-----------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 + P+RII+D ++ KII+T ++++ D + K+ I Sbjct: 61 TLSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQTK--EKILLMRLKLDKEIWPENTKQIII 118 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 Y + DL +L L + +L +E G+ ++ F+ L+D II+Y + ++G P Sbjct: 119 KPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178 Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGKN 358 + L K F C++ D+ G D+ ++ KN Sbjct: 179 LFIFNNQL-KLFDCLKFDFKDIRQIGPDIRIKLEPKN 214 >gi|72161280|ref|YP_288937.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] gi|71915012|gb|AAZ54914.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] Length = 239 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 54/192 (28%), Positives = 87/192 (45%), Gaps = 17/192 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + L A+S D I A + ++ ++V LRA DAILVG GT+ AD+P L Sbjct: 14 ERPRVILSCAMSVDGYIDDASPERLRLSTEADFDEVDELRASCDAILVGAGTIRADNPRL 73 Query: 208 TCRLNGLQEHS-----PM---RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 R Q+ P +++L L +++ T ++ V ++ A A Sbjct: 74 LVRSPERQQRRLAAGHPAHLRKVVLSTSGDLDPAARVFTTGDAGCLLYVADH----AAEA 129 Query: 260 FRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 R + + ++ DL ++L L RGV LLVEGG AV +F+ L D + L Sbjct: 130 ARHRFAGTAGVEVVAAGAPDLDRVLADLARRGVRRLLVEGGGAVHTAFLTRNLADELRLA 189 Query: 315 RSQIVIGEGGIP 326 + +G+ P Sbjct: 190 IAPFFVGDARAP 201 >gi|158425795|ref|YP_001527087.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571] gi|158332684|dbj|BAF90169.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571] Length = 246 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/198 (25%), Positives = 91/198 (45%), Gaps = 9/198 (4%) Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +D +E G +F + Q + ++ S D I + S I G + +H Sbjct: 1 MDDSIEDLGTLFAELNASPQF-----VIGQLGQSLDGRIALPSGESKYINGASGLDHIHR 55 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+LVG+GTV+ADDP+L R + P R++LDP+ +L ++ ++ Sbjct: 56 IRAMVDAVLVGVGTVIADDPQLNVRR--VPGRDPARVVLDPNGRLPASARCLQND--GAR 111 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +V AL + + + D ++ L RG+ +LVEGG +F++ Sbjct: 112 RLVVRRPSAAGALPDGVERVEVEGTGALDPAAVVAALRARGLKRILVEGGPRTLSAFLDG 171 Query: 306 RLVDSIILYRSQIVIGEG 323 +D + S +++G G Sbjct: 172 GAIDHFHIIVSPVILGSG 189 >gi|307329731|ref|ZP_07608887.1| bifunctional deaminase-reductase domain protein [Streptomyces violaceusniger Tu 4113] gi|306884571|gb|EFN15601.1| bifunctional deaminase-reductase domain protein [Streptomyces violaceusniger Tu 4113] Length = 348 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 12/186 (6%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 +TG + +H LRA +DA++VG GT +ADDP+LT R P+R++LDP ++ LD Sbjct: 85 VTGEEDRRHLHRLRALADAVVVGAGTAVADDPQLTVR--ACAGTHPVRVVLDPRGRVPLD 142 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++ + +V + A + + + D +L+ L RG+ +L+E Sbjct: 143 RRVFTDGSAPTLWVVGATGERRPAPPDGVELLTLTEPDAFAPHQLVRALRRRGLGRVLIE 202 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVRRDYFG 347 GG F+++ + + + + +++G+ GIP +P+ L VRR G Sbjct: 203 GGGVTVSRFLHAGALHRLYVTVAPVLLGD-GIPGLRFDGTPVMRDALRP---PVRRSTLG 258 Query: 348 SDVCLE 353 D E Sbjct: 259 EDTLFE 264 >gi|307596329|ref|YP_003902646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Vulcanisaeta distributa DSM 14429] gi|307551530|gb|ADN51595.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Vulcanisaeta distributa DSM 14429] Length = 219 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 90/185 (48%), Gaps = 15/185 (8%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 ++H +RA DAI+VG TV+ DDP LT R + ++ +P+R+++D ++ L +K++ Sbjct: 35 RLHEVRASVDAIMVGANTVINDDPSLTPRYVKAIR--NPIRVVIDGKLRIPLTAKVVTNK 92 Query: 241 LLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRDLKKLLT-ILVGRGVTSLLVEGGAA 297 +I+ TE D + L + ++ + +LK +L + + + V +LVEGG Sbjct: 93 EAPTIIVTTEQADRNKIAQLMNMSVEVWVMGKERINLKDVLERLFMEKNVKRVLVEGGGH 152 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDV 350 + I LVD I L S V G G G P+ +E L V G +V Sbjct: 153 LNWELIKEGLVDEIRLTISPYVFGAGTSFIEGEGYPTTIEGPRLR--LKSVNICECGQEV 210 Query: 351 CLEYI 355 L YI Sbjct: 211 ILNYI 215 >gi|219115761|ref|XP_002178676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410411|gb|EEC50341.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 299 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 88/201 (43%), Gaps = 31/201 (15%) Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + VH LR SDA+LVG GTV AD+P LT R + P+R++LDP +L L K + A Sbjct: 92 DMVHRLRCCSDAVLVGRGTVQADNPSLTVRRTPC-DRQPLRVVLDPRLEL-LRQKTDQGA 149 Query: 241 LLAPVI---------IVTENDDPVLAL----------AFRKKNINIIYCDCRDLKKLLTI 281 A + V + D+ L L + N+ + D L Sbjct: 150 RFALLEDGLTTVVYHTVPDLDEDSLNLLETITVVYVPPTKPSGDNVPHGDYLSAATLTRD 209 Query: 282 LVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L R GV L+VEGG A F+ VD +IL + + + PLE G EK + Sbjct: 210 LRDRFGVNHLMVEGGPLTARQFLYEHQVDRVILVHASLCFRQ-----PLESGLTEKVLVD 264 Query: 341 VRRDYFGSDVC----LEYIGK 357 + G++ C +EY + Sbjct: 265 AGLEKLGTEPCGVDQIEYWSR 285 >gi|241950233|ref|XP_002417839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative; htp reductase, putative [Candida dubliniensis CD36] gi|223641177|emb|CAX45554.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Candida dubliniensis CD36] Length = 304 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 63/236 (26%), Positives = 99/236 (41%), Gaps = 62/236 (26%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ D ILVGIGT+LADDP+L Sbjct: 42 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDCILVGIGTILADDPKL 101 Query: 208 TCRL-------------NGLQEHSPMRIILDPHFKLSL-----------------DSK-- 235 CR H +++DPH K D+K Sbjct: 102 NCRYIEPIIDKGVGVGVGVGVGHQIRPVVIDPHGKWQYHQSQLCRICQTTTIQQQDNKQN 161 Query: 236 ----------IIKTALLAPVIIVTENDDP-VLALAFRKKN------------INIIYCDC 272 + A LAP II+ E+ P V + K IN+ Sbjct: 162 TSPPPPPPPPPPQAAGLAPFIIIDESTIPNVESEKMVNKQGGKYIKLPLLSTINVSINWV 221 Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 + L+KL + G+ S+++EGGA + + + + +L+DSII+ + + +G G+ Sbjct: 222 KILQKLYQL----GLKSIMIEGGAKIINDLLSINDYKLIDSIIITIAPVFLGCNGV 273 >gi|193884346|dbj|BAG54993.1| riboflavin biosynthesis protein ribG [Amphibacillus xylanus] Length = 198 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 58/175 (33%), Positives = 81/175 (46%), Gaps = 11/175 (6%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K A++ D + + ITG + V R ILVG T+L D+P L L Sbjct: 1 KQAITLDGKLSL-DSKRTAITGKDTYQYVRKERNHYQGILVGSQTILTDNPFL---LGTD 56 Query: 215 QEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272 Q P+RIILD +L LD + +PV I TE + K++ I Sbjct: 57 QTLHPIRIILDRRGRLFNKLDLNVFINQA-SPVWIFTERKVNIKL----PKHVEAIVLKS 111 Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 +K ++ L R + SL VEGGA V SF+NS D +I Y + VIG G+P+ Sbjct: 112 ATVKSIIKELTRRNIHSLYVEGGAKVHDSFLNSGYWDQMITYIAPKVIGGNGVPA 166 >gi|70607877|ref|YP_256747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus acidocaldarius DSM 639] gi|68568525|gb|AAY81454.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus acidocaldarius DSM 639] Length = 214 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 69/147 (46%), Gaps = 5/147 (3%) Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 I K + H LRA+ DAI+VG TV D+P LT + ++ P+R+I+ L + SKI Sbjct: 32 IDKQRQHQLRAEVDAIMVGGNTVRIDNPSLTVKYAKKKDKDPIRVIVSKSLNLDVSSKIF 91 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296 L V +EN L R ++ +L + + L V L++EGG Sbjct: 92 SIPPLTVVYTKSENRSKQYELEKR----GVVVRRFNELSDVFSDLYESFNVRRLMIEGGG 147 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG 323 + S I+ +L D I + S + G G Sbjct: 148 NLIWSVIHEKLYDEIRVTVSPRIFGNG 174 >gi|108805370|ref|YP_645307.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Rubrobacter xylanophilus DSM 9941] gi|108766613|gb|ABG05495.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Rubrobacter xylanophilus DSM 9941] Length = 230 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 24/186 (12%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +TL A + D + A S I+ S + H LRA DA++VG+GTV DDP LT RL Sbjct: 11 VTLSYAQTLDGRLATAAGSSQWISCESSLARAHALRAGHDAVMVGVGTVCRDDPRLTVRL 70 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDDPVLALAFRKKNINIIYC 270 + +P+R+++D + + ++ V+ VTE A R++ Sbjct: 71 --VPGENPLRVVVDSTLRTPPSAAVLSDGGAGRTVLAVTER-------ASRERCARAERL 121 Query: 271 DCRDLKKLLTILVGR-------------GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 R L +L GR GV S++VEGGA++ SF+ RL D + + + Sbjct: 122 GARVL-RLPEDGEGRVELAALLAALWESGVRSVMVEGGASLITSFLRERLADRLAVCVAP 180 Query: 318 IVIGEG 323 ++G G Sbjct: 181 KLLGRG 186 >gi|213421646|ref|ZP_03354712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 87/188 (46%), Gaps = 21/188 (11%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R ++ LK+ S D MA S IT ++ V LRAQS AIL TV Sbjct: 1 FLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATV 60 Query: 201 LADDPELTCRLNGL---------QEH--SPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 LADDP LT R L QE+ P+RI++D +++ +I++ + Sbjct: 61 LADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQ 120 Query: 250 END----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 E+ D V ++ N ++ DL L+ L + + S+ VE G +A + + + Sbjct: 121 EDSHAWPDSVRTISVPAHNGHL------DLVVLMMQLGRQQINSIWVEAGPGLAGALLQA 174 Query: 306 RLVDSIIL 313 LVD +I+ Sbjct: 175 GLVDELIV 182 >gi|296536225|ref|ZP_06898343.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] gi|296263447|gb|EFH09954.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] Length = 280 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 79/179 (44%), Gaps = 10/179 (5%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++A + D I AG S I G H LRA DA+LVG GTV DDP LT R Sbjct: 64 RLAQTLDGRIATAGGSSQWIGGPGDLLHTHRLRALCDAVLVGAGTVKHDDPRLTTR--DC 121 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR- 273 P+RIILD L + ++ P ++V D L + + R Sbjct: 122 PGPDPVRIILDTSRTLGTEYRVFAEG-GPPTLLVCAEDAAERGLPRDRHGAAEVLRAPRA 180 Query: 274 -----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 D+ LL L RG+ + VEGG F+ + +D + + + +++G GIP+ Sbjct: 181 AIGGLDIATLLPKLAARGLRRIFVEGGGLTVSRFLAAGCLDRLHVTVAPVLLGS-GIPA 238 >gi|183220072|ref|YP_001838068.1| putative riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910192|ref|YP_001961747.1| pyrimidine reductase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774868|gb|ABZ93169.1| Pyrimidine reductase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778494|gb|ABZ96792.1| Putative riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 213 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 52/189 (27%), Positives = 95/189 (50%), Gaps = 11/189 (5%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLS 231 +T K Q+ + R+QSDA+L+G ++L D+P + R N L +P +IL L Sbjct: 25 LTSSEDKTQMDVYRSQSDAVLIGKNSILNDNPIVKIRAVPNAL---NPRPVILVRKGTLP 81 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSL 290 D + + + P+II T+++ + + K I + D D KK+ IL +G ++ Sbjct: 82 PDKHVFEESDHIPLIICTKSNLKEIKTSLENKAEIFALDSDDIDPKKVTGILKRKGYKNV 141 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDY 345 L+EGG + SF+ + LVD I + +IG+ G+ + G+ ++N+ + Sbjct: 142 LLEGGPKLNFSFLEADLVDRIYITVVPYIIGKTGLAGIADRNSELPGFDKQNWTLKQHFT 201 Query: 346 FGSDVCLEY 354 G+++ L Y Sbjct: 202 KGNEIFLVY 210 >gi|126179344|ref|YP_001047309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] gi|125862138|gb|ABN57327.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] Length = 228 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 107/225 (47%), Gaps = 29/225 (12%) Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204 R H+ + ++ D + + G S + +++ +H RA+ DAI+VG T+ D+ Sbjct: 6 RPHVLMMSEITVDGKLTLKRGASSKILMKYMAPETELLLHQTRAEYDAIMVGANTIRIDN 65 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK 263 LT RL ++ SP+R+I + D+ ++ A +I P +A R+ Sbjct: 66 SFLTVRL--VEGKSPLRVIPSSRADIPPDANVLGPD--ARTVIAVSEAAPAENVARLRES 121 Query: 264 NINIIYCDCR--DLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++++ + DL +L+ IL GV +++EGG + + +N RLVD I L ++ Sbjct: 122 GVDVVVAGEKEVDLPELMGILKRDYGVDRMMIEGGPTLNWAMLNHRLVDEIRLIHLPFIV 181 Query: 321 GEGGIPSPL--------EEGY---LEKNFMCVRRDYFGSDVCLEY 354 G PS + EE + L+++FMC GS++ E+ Sbjct: 182 GGADTPSLVGGMHIETEEEMFRLSLKRHFMC------GSNLVTEW 220 >gi|145591565|ref|YP_001153567.1| hypothetical protein Pars_1352 [Pyrobaculum arsenaticum DSM 13514] gi|145283333|gb|ABP50915.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Pyrobaculum arsenaticum DSM 13514] Length = 224 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/178 (25%), Positives = 86/178 (48%), Gaps = 8/178 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + + AV+ D I + G ++ ++H +RA DA++VG T + D+P LT Sbjct: 2 RPRVYMMAAVTVDGRIA-SKTGYSKLSCPYDLRRLHAMRAMVDAVVVGANTAITDNPRLT 60 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINI 267 R + +P+R+++D + D ++ + L I+ T + P + ++K I + Sbjct: 61 VRYA--EGRNPIRVLIDGALRAPTDLRLFDRSALT--IVFTTSKAPSEKIKELQEKGIEV 116 Query: 268 IYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + + D +++ L RGV +L+EGG F+ LVD +I+ + V G G Sbjct: 117 VVTEGSAVDPAEVVAHLSKRGVEKVLLEGGGKTNWEFLKRCLVDELIITVTPYVFGRG 174 >gi|322711515|gb|EFZ03088.1| hypothetical protein MAA_00162 [Metarhizium anisopliae ARSEF 23] Length = 243 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 26/199 (13%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211 TL A S D+ + ++ I+G S+ H R++ D IL+G+GT +ADDP L CR+ Sbjct: 5 TLTFATSLDSSLTLSPGAPTAISGPRSEAMTHYPRSRHDGILIGVGTAVADDPSLNCRIA 64 Query: 212 ------NGLQEHSPMRIILDP--HFKLSLDSKIIKTALLA---PVIIVTENDDP-----V 255 + P +++DP ++ + +SK+ K P +VT P Sbjct: 65 GVGGYGGDGLDGQPRPVVIDPTARWEFTDNSKLFKLCREGRGRPPWVVTALRKPPADIRA 124 Query: 256 LALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-- 307 L + K IN+ D LL G+ S++VE G + +S ++ + Sbjct: 125 LLEKYGGKYINVEIPTSNIGEHHLDWNLLLVRFKENGLNSVMVEAGGQIINSLLSPQYQP 184 Query: 308 -VDSIILYRSQIVIGEGGI 325 +D +I+ + +G+GG+ Sbjct: 185 NIDMVIVTIAPTWLGQGGV 203 >gi|320169275|gb|EFW46174.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 1344 Score = 62.8 bits (151), Expect = 9e-08, Method: Composition-based stats. Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 4/128 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE- 62 S D R+M+ A++ + V + T V C+IV++G+V+ G + G HAE AL++ Sbjct: 1190 SNDWRYMAMAIQQANQSVPV-ETAYCVGCVIVQNGVVLSSGFSRELPGNTHAEECALKKL 1248 Query: 63 AGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+A+GAT Y T+EPC + + C II I RVV+ V +P V G+ L + Sbjct: 1249 TPEQAQGATVYTTMEPCTTRLSGNVCCTDHIINNRIARVVIGVREPAEFVVCIGIDRLEK 1308 Query: 122 KGIIVDRM 129 GI V R+ Sbjct: 1309 AGIQVTRL 1316 >gi|54025279|ref|YP_119521.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM 10152] gi|54016787|dbj|BAD58157.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM 10152] Length = 228 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 10/188 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207 R ++ L +A S D + G + ++ ++V +RA+SDAILVG TV D+P L Sbjct: 3 RPYVLLSVATSVDGYLDDTGPERLLLSNDADFDRVDQVRAESDAILVGAATVRTDNPRLI 62 Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVLAL 258 R+ + P+++ + L +K T PV+ T A Sbjct: 63 VKSEARQAARVAAGRSRHPLKVTVTATGDLDPAAKFWHHGTEDHRPVVYTTSAGHEKTAQ 122 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + D LL L GRGV L+VEGG + +F++ RL D ++L Sbjct: 123 LLDGLADVVDLGPAIDFGALLDDLGGRGVRRLMVEGGGHIHTAFLSHRLADELLLAIGPT 182 Query: 319 VIGEGGIP 326 V+G+ P Sbjct: 183 VVGQANAP 190 >gi|124485467|ref|YP_001030083.1| hypothetical protein Mlab_0643 [Methanocorpusculum labreanum Z] gi|124363008|gb|ABN06816.1| bifunctional deaminase-reductase domain protein [Methanocorpusculum labreanum Z] Length = 225 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/182 (25%), Positives = 89/182 (48%), Gaps = 14/182 (7%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H RA+ DAI+VG T+ D+ LT R+ ++ +P+R+I + L L++ + T Sbjct: 44 LHETRAEYDAIMVGSSTIRIDNSFLTVRM--VEGENPLRVIPNSLADLPLEANVFDTTKA 101 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVA 299 V+ V+E AF + ++++ C D D +L+ IL + + L++EGG + Sbjct: 102 RTVLAVSEKAPKDRIDAFTARGVDVVVCGEDRVDFVQLMNILSAKYQIKKLIIEGGPTLN 161 Query: 300 HSFINSRLVDSIILYRSQIVIGE-------GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 ++ LVD I L ++G GG+P E ++ + + +G+++ Sbjct: 162 WHMLHHGLVDEIRLIHMPFIVGGSDTPSLVGGMPLASENDMIKLDLRSTK--MYGTNLVT 219 Query: 353 EY 354 EY Sbjct: 220 EY 221 >gi|167629244|ref|YP_001679743.1| cytidine and deoxycytidylate deaminase zinc-binding region protein, putative [Heliobacterium modesticaldum Ice1] gi|167591984|gb|ABZ83732.1| cytidine and deoxycytidylate deaminase zinc-binding region protein, putative [Heliobacterium modesticaldum Ice1] Length = 152 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/152 (32%), Positives = 68/152 (44%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +FM AL R + C+IVKDG VIGRG T HAEV A+++ Sbjct: 5 DDKFMGLALEEGR--QAYAKGEVPIGCVIVKDGEVIGRGHNLRETEKNPVAHAEVLAIQD 62 Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G GAT YVT+EPC P CA I+ I RVV V DP +G Sbjct: 63 AANRIGGWRLAGATLYVTVEPC------PMCAGAIVLARIPRVVFAVMDPKGGAAGTCFN 116 Query: 118 -----WLSQKGIIVDRMMESEGKIFLHAYLTR 144 W + + ++ + E E + + ++ R Sbjct: 117 ILESPWTNHRVSVISGVREGEARELMQSFFQR 148 >gi|149202756|ref|ZP_01879728.1| bifunctional deaminase-reductase-like protein [Roseovarius sp. TM1035] gi|149144038|gb|EDM32072.1| bifunctional deaminase-reductase-like protein [Roseovarius sp. TM1035] Length = 272 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 12/176 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + +I S D + + ++G +H +RA DA++VG+ T L D+P LT R Sbjct: 51 QVVAQIGQSLDGRVATVTGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALHDNPRLTVR 110 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L + +P R+++DP +L D+++ I++ E D P R + +I Sbjct: 111 L--VSGQNPARVVIDPSGRLPNDARLFAEDGTR-RIVIQEVDKP------RPAGVEVIQL 161 Query: 271 DCRDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D +++ L G+ L+VEGGA FI + L+ + + + ++IG G Sbjct: 162 PRSDWISPPAIVSALRKVGLHHLMVEGGAITIARFIEADLLARLHVAVAPLLIGAG 217 >gi|255718859|ref|XP_002555710.1| KLTH0G15576p [Lachancea thermotolerans] gi|238937094|emb|CAR25273.1| KLTH0G15576p [Lachancea thermotolerans] Length = 250 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 27/211 (12%) Query: 137 FLHAYLTR----QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 FL+ YL ++ +TL A S D+ I I+ +K H LR + DA Sbjct: 13 FLYQYLPAAAAGNASQKPFVTLTYAQSLDSRISKGKGLRTTISHPETKTMTHYLRYKHDA 72 Query: 193 ILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLD----SKIIKTALLA 243 I++G GT LADDP L C+ SP +I+DP K + ++ + Sbjct: 73 IMIGCGTALADDPGLNCKWAPAGKTSSTSSSPRPVIIDPQGKWDFEGSKMQQLFREDAGK 132 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGG 295 P +IV + +L K++ + Y D L+ +L G S++VEGG Sbjct: 133 PPVIVVRDLGSIL-----KRHPDATYVSAPSSPAGRFDWLTLMLLLKSEFGFESIMVEGG 187 Query: 296 AAVAHSFIN-SRLVDSIILYRSQIVIGEGGI 325 A V + ++ +VDS+I+ +G G+ Sbjct: 188 ALVINQLLSRPDVVDSLIVTVGAKYLGSEGV 218 >gi|167044545|gb|ABZ09219.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG6N3] Length = 217 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 7/187 (3%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + A++ D + G ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 5 RPRVIFSAAITLDGKLATR-SGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLS 63 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINI 267 ++ +++ +P+RIILD + + S+I+KT P II V++ K + + Sbjct: 64 --VHNIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQV 121 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G G Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG-GMT 180 Query: 326 PSPLEEG 332 + L +G Sbjct: 181 ATTLVDG 187 >gi|213615891|ref|ZP_03371717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 198 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 27/203 (13%) Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL---------QEH--SPMRI 222 IT ++ V LRAQS AIL TVLADDP LT R L QE+ P+RI Sbjct: 2 ITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRI 61 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYCDCRDLKKL 278 ++D +++ +I++ + E+ D V ++ N ++ DL L Sbjct: 62 VIDSQNRVTPAHRIVQQPGETWIARTQEDSHAWPDSVRTISVPAHNGHL------DLVVL 115 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGY 333 + L + + S+ VE G +A + + + LVD +I+Y + ++G +P LE+ Sbjct: 116 MMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPG-LEKLA 174 Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356 F + G DVCL + Sbjct: 175 DAPQFTFSEIRHVGPDVCLHMVS 197 >gi|167043956|gb|ABZ08643.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG3J11] Length = 217 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 56/176 (31%), Positives = 93/176 (52%), Gaps = 6/176 (3%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + A++ D + G ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 5 RPRVIFSAAITLDGKLATR-SGDSKLSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLS 63 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINI 267 ++ +++ +P+RIILD + + S+I+KT P II V++ K + + Sbjct: 64 --VHNIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQV 121 Query: 268 IYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 I C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G Sbjct: 122 IVCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVG 177 >gi|300236|gb|AAC60554.1| riboflavin biosynthesis [Saccharomyces cerevisiae] Length = 183 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 50/156 (32%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSK-----I 236 H LR D ILVG GTVLAD+P L C+ +SP II+D K D Sbjct: 2 THYLRHHHDGILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELF 61 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGR-GVTS 289 IK P+++VT +P++ ++++++ C D KKL IL + S Sbjct: 62 IKRQGKPPIVVVTS--EPII----KEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRS 115 Query: 290 LLVEGGAAVAHS-FINSRLVDSIILYRSQIVIGEGG 324 ++VEGGA V + + S +V+S+I+ +G G Sbjct: 116 VMVEGGANVINQLLLRSDIVNSLIITIGSTFLGSSG 151 >gi|124027442|ref|YP_001012762.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus butylicus DSM 5456] gi|123978136|gb|ABM80417.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus butylicus DSM 5456] Length = 250 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 71/133 (53%), Gaps = 5/133 (3%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 ++ LLR +DA+++G T L DDP L RL E R+++D ++S ++++ Sbjct: 37 RLRLLRGAADAVMIGANTALLDDPSLRKRLEPRSEKY-YRVVVDGRLRISASLRLVREP- 94 Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCD-CRDLKKLLTIL-VGRGVTSLLVEGGAAV 298 PVI+ T L R ++++ + DL + L IL V GV LLVEGG + Sbjct: 95 EPPVIVFTAVESQRARELEERGVRVHVVGSNGVVDLARALEILAVEYGVERLLVEGGGRL 154 Query: 299 AHSFINSRLVDSI 311 +S ++SRLVD + Sbjct: 155 NYSLLSSRLVDEV 167 >gi|149375142|ref|ZP_01892914.1| bifunctional deaminase-reductase-like protein [Marinobacter algicola DG893] gi|149360506|gb|EDM48958.1| bifunctional deaminase-reductase-like protein [Marinobacter algicola DG893] Length = 290 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 9/180 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 RS + ++ S D I S I G +H LRA S+A++VG GT D+P LT Sbjct: 73 RSRVVGQMGQSLDGRIATVTGASKFINGEDGITHLHRLRAVSEAVIVGAGTASTDNPRLT 132 Query: 209 CR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 R +G+ +P+R+++D + ++ DS + + +P + + D + + Sbjct: 133 VRKTSGI---NPVRVVIDRNHRVP-DSHHLFSDEASPTLRLVAGDYHAGDKLAPRHGVTD 188 Query: 268 IYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + C D D +L +L G+ + VEGG F+N+ L+D + + + ++IG G Sbjct: 189 VPCLGRDDTTDPAHILEVLADFGLRKIFVEGGGLTVSEFLNAALLDRLHVMVAPMIIGSG 248 >gi|237752793|ref|ZP_04583273.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis ATCC BAA-430] gi|229376282|gb|EEO26373.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis ATCC BAA-430] Length = 348 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 100/243 (41%), Gaps = 44/243 (18%) Query: 20 WHVGL-TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA----- 72 W L T NP+VA L++ ++G ++ G PHAEV AL++A G A Sbjct: 15 WKEQLKTLPNPAVAALVLDENGAIVSLESHKECGKPHAEVLALQKAYAALSGDNAILSLK 74 Query: 73 ----------------------YVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPD 108 YVTLEPCS G++P CA + + V++ D D Sbjct: 75 ESQAIHSYLLKNAIPIFKDTMLYVTLEPCSSNKKGKTPSCATLLKTLKPKCVIIATQDCD 134 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT------RQVEKRSHITL-KIAVSQD 161 G G Q L + GI V + E E +H R ++ + L K A D Sbjct: 135 KSAKG-GAQELIEAGICVIKAWEVEALQAIHKQANALLLPFRLLQTQGKFMLFKYASRLD 193 Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221 I I+ +++ +H R ++D +L+ +V D+P L R L++ +P Sbjct: 194 GSIDGGQ-----ISTHQAQSLMHDYRTKADVLLISGESVRVDNPRLDTRFATLEQRNPNV 248 Query: 222 IIL 224 IL Sbjct: 249 AIL 251 >gi|325068553|ref|ZP_08127226.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinomyces oris K20] Length = 111 Score = 62.0 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 39/100 (39%), Positives = 50/100 (50%), Gaps = 4/100 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 M ALR + NP V C+I+ DG V+ G G HAEV AL Sbjct: 12 MQRALRAAASPDAPPGPNPRVGCVILSPDGDVLAEGHHRGAGTAHAEVDALANLAAAGAS 71 Query: 68 -RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 RG TA VTLEPC+H R+ PC Q +++ G+ V+ DD Sbjct: 72 ARGTTAVVTLEPCNHQSRTGPCVQALLDAGVAEVIYAQDD 111 >gi|317178213|dbj|BAJ56002.1| riboflavin biosynthesis protein [Helicobacter pylori F16] Length = 344 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/242 (26%), Positives = 106/242 (43%), Gaps = 41/242 (16%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDSAFKDCVFLITLEPCNSYGKTPACSGLLEVLKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 + G LQ +G++ + +E++ K L + T + + R ++ K+A+ M G Sbjct: 136 AKKGGLARLQKARIEGVVCES-LENKAKDLLLPFRTMEQKGRFNL-FKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 191 YHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PH 227 H Sbjct: 249 KH 250 >gi|170740596|ref|YP_001769251.1| deaminase-reductase domain-containing protein [Methylobacterium sp. 4-46] gi|168194870|gb|ACA16817.1| bifunctional deaminase-reductase domain protein [Methylobacterium sp. 4-46] Length = 243 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 90/198 (45%), Gaps = 30/198 (15%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L + L+ + + ++ S D I S I + + +H LRA DAI+VGI Sbjct: 22 LFSPLSEGSTVQPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGI 81 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK------------TALLAPV 245 GTVLADDP LT R + HSP R+I+DP ++ ++ ++ A + P Sbjct: 82 GTVLADDPLLTVRR--VPGHSPARVIIDPAGRIPPGAQCLREDGARRILVCGPQARVPPG 139 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + V ++P F + + + L G +L+EGGA +FI++ Sbjct: 140 VEVLRMEEPS---PFPPRAV-------------IAALGRLGFARILIEGGARTISAFIDA 183 Query: 306 RLVDSIILYRSQIVIGEG 323 +D + + + +++G G Sbjct: 184 GAIDRLHVMVAPLLLGSG 201 >gi|317014921|gb|ADU82357.1| riboflavin biosynthesis protein [Helicobacter pylori Gambia94/24] Length = 344 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 46/255 (18%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65 L NPSVAC+++ K+ ++ PHAEV A + A + Sbjct: 21 LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKNDLEKLEDPK 80 Query: 66 ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + R A+ +TLEPC+ YG++P C++ + +R V+ ++ + + G Sbjct: 81 ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRAVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 + I+ R +E++ K L + R +E++ L K+A+ M G G Sbjct: 141 LARLQKAHIETIICRNLENKAKNLLLPF--RIMEQKGRFNLFKLALR---MNGDYYHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL-----D 225 ITG S H RA D +++ T+ D+P L R N Q +P IL + Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNIAILSKHSIN 253 Query: 226 PHFK-LSLDSKIIKT 239 PH K S+ ++++ T Sbjct: 254 PHSKVFSVPNRLVNT 268 >gi|317011639|gb|ADU85386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter pylori SouthAfrica7] Length = 344 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 38/219 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68 L NPSVAC+++ K+ ++ V PHAEV A + E E+ + Sbjct: 21 LALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLAAQSALKILRPSLKSDLEKLEDPK 80 Query: 69 GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + + +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 81 ILSGFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 + + +E++ K L + R +EK+ L K+A+ M G G Sbjct: 141 LARLKKAHVEAFTCQSLENKAKDLLLPF--RIMEKKGRFNLFKLALR---MNGDYKHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ITG S H RA D ++V T+ DDP L R Sbjct: 195 -ITGQKSAIFTHNQRATCDTLIVSGKTIRTDDPLLDARF 232 >gi|15646114|ref|NP_208296.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695] gi|2314679|gb|AAD08541.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695] Length = 344 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 140/340 (41%), Gaps = 78/340 (22%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C++ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 191 HHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283 K S+D SK+ AP +V DP +DL + Sbjct: 249 ---KRSIDPNSKVFS----APNRLVNTFHDP------------------KDLP------L 277 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +G +EGG + S + +D+++L+ +IGE Sbjct: 278 EKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEA 313 >gi|330467994|ref|YP_004405737.1| deaminase-reductase domain-containing protein [Verrucosispora maris AB-18-032] gi|328810965|gb|AEB45137.1| deaminase-reductase domain-containing protein [Verrucosispora maris AB-18-032] Length = 235 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 63/212 (29%), Positives = 88/212 (41%), Gaps = 46/212 (21%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R ++ L A S D I A + ++ ++V +RA DAILVG GTV DDP L Sbjct: 8 RRPYVLLSCATSIDGYIDDATDERLMLSNDADLDRVDEVRASCDAILVGAGTVRRDDPRL 67 Query: 208 TCR---------LNGLQEHSPMRII------LDP---HFKLSLDSKIIKTALLA------ 243 R GL E SP+R+ LDP F + +I+ A A Sbjct: 68 LVRCDRRRADRIARGLPE-SPIRVTVTGCGDLDPTARFFTVGDTERIVYCASAACEKTRH 126 Query: 244 ---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + DP+ DL + LT L RGV LLVEGGA V Sbjct: 127 RVGERATVVDAGDPI------------------DLARALTDLADRGVRRLLVEGGALVHG 168 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 F+ + L D + L + +G+ P + +G Sbjct: 169 QFLTAGLADELHLVVAPFFVGDRRAPRFVGDG 200 >gi|297200713|ref|ZP_06918110.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC 29083] gi|197712280|gb|EDY56314.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC 29083] Length = 375 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 58/111 (52%), Gaps = 7/111 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86 A ++ DG + RG + G P HAE AL + A AT Y +LEPC+H P Sbjct: 256 AVVVAADGTELARGHSREGDDPVVHAEEAALAKIDPADPRLATATVYTSLEPCTHRASRP 315 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGK 135 PCA+ I++ G+RRVV +PD V+G G L+ G+ V + E E + Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAGADGTGTLTAAGVDVVVLGEHEER 366 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 79/185 (42%), Gaps = 11/185 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64 Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R+ + P+++ + +L D+ T V + AL Sbjct: 65 SETRRAARVAAGKPPYPLKVTVSGSGELDPDANFWHTGGDKLVFTTDQGAQRARALGLAA 124 Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +++ D ++LL L RGV L+VEGG + + L D + L + + +G Sbjct: 125 DVVSL--GPELDWRRLLEHLHEERGVERLMVEGGGRIHTQLLQQGLADEVQLVLAPLFVG 182 Query: 322 EGGIP 326 P Sbjct: 183 SPEAP 187 >gi|162454006|ref|YP_001616373.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] gi|161164588|emb|CAN95893.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] Length = 229 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 86/191 (45%), Gaps = 19/191 (9%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA--- 240 H RA+ DA+LVGI TV+ DDP LT R G + PMR++L + +++++ Sbjct: 39 HRARAEHDAVLVGIRTVVIDDPRLTLR--GCEGRQPMRVVLASALGVPEGARLLQPPGSG 96 Query: 241 ------LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL---LTILVGRGVTSLL 291 ++ L R + ++ D L L L L RGV LL Sbjct: 97 QPAGGRVVVFGAAGRAPRAAQAWLEERGAEVIVVPADASGLVSLPHALAELHARGVRRLL 156 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGG AV SF+ +RL D + + +G+ IP+ G L + + D + Sbjct: 157 VEGGGAVLTSFLRARLADRAEVEIAPRFLGDTAIPA---VGALGEAPLASAIDL--REPA 211 Query: 352 LEYIGKNLCLQ 362 +E +G N+ L+ Sbjct: 212 VELLGGNVLLR 222 >gi|147918769|ref|YP_687507.1| riboflavin specific deaminase [uncultured methanogenic archaeon RC-I] gi|110622903|emb|CAJ38181.1| predicted riboflavin specific deaminase [uncultured methanogenic archaeon RC-I] Length = 225 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 90/187 (48%), Gaps = 11/187 (5%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203 KR ++ + ++ D + + G S I G + ++ +H R++ DAI+VG T+ D Sbjct: 2 KRPYVEVISEMTVDGKLTLKRGLSSKIIMGLMDEHSHYFLHKKRSEFDAIMVGSNTIKID 61 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRK 262 + LT RL SP+R+I + L + ++ AP +I V+E D A R Sbjct: 62 NSILTNRL--ATGASPIRVIPCSDGSIPLTANVLNKD--APTLICVSEKADACRVEAIRN 117 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ C D D+ L+ L RG+ L+VEGG + I+ +++D I L + +I Sbjct: 118 TGAEVVICGRDRIDIDLLMDTLYNRGIRRLMVEGGPTLIWQLISRKMIDHITLIQIPYII 177 Query: 321 GEGGIPS 327 G PS Sbjct: 178 GGDSTPS 184 >gi|300788900|ref|YP_003769191.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis mediterranei U32] gi|299798414|gb|ADJ48789.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis mediterranei U32] Length = 363 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 32 ACLIVKDGIVIGRGVTAYGGC-PHAEVQALEEAGEEAR--GATAYVTLEPCSHYGRSP-P 87 A + DG V+ G + G HAE AL + G + R GAT Y +LEPCSH P Sbjct: 246 AVITDADGEVVATGHSGEGDPGNHAEEAALAKCGGDPRLAGATMYSSLEPCSHRSSHPRS 305 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 C Q I++ GI RVV +P V V RG + L Q G Sbjct: 306 CTQLILDAGIPRVVFAWREPPVFVDARGTELLRQAG 341 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 88/222 (39%), Gaps = 29/222 (13%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R H+ L A S D + + ++ V LRA++DAI VG GTV AD+P L Sbjct: 4 RPHVLLSAAQSLDGYLDDTSPERLVLSTEDDFAVVDRLRAEADAIFVGAGTVRADNPRLL 63 Query: 209 CR--------LNGLQEHSPMRII-----LDPH---FKLSLDSKIIKTALLAPVIIVTEND 252 R L + P+++ LDP F + KI+ AP Sbjct: 64 VRSPELRRKRLEQGKSEQPVKVTVTTRGLDPDAQFFTVGDTEKIV----YAP-------- 111 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 P A A + + + D ++L L RG+ +LLVEGG + F+ L D + Sbjct: 112 -PGAADALKHVATVVDAGNPPDFGRVLDDLGARGIENLLVEGGGGIHTRFLTEGLADELR 170 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L + +G+ P + G + + + LEY Sbjct: 171 LAIAPFFVGQPDAPRFVGPGLYPRPLVLTAANELQGMAVLEY 212 >gi|256786427|ref|ZP_05524858.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] gi|289770318|ref|ZP_06529696.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] gi|289700517|gb|EFD67946.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL + E+ R GAT Y +LEPC+ P Sbjct: 256 AVVVAADGSELARGHSREGGDPVVHAEEAALAKVDPEDPRLPGATVYSSLEPCARRASRP 315 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSG 113 PCA+ I++ G+RRVV +PD V+G Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAG 343 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 H+ L AVS D + G + ++ ++V +RA DAILVG GTV AD+P L Sbjct: 5 HVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPRLLVN 64 Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR- 261 R+ + P+++ + +L ++ T +++T +D A A Sbjct: 65 SAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTG--GDKVLLTTDDGARRARALGI 122 Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ + D D + L L RGV L+VEGG V + L D + L + + + Sbjct: 123 GADVVSLGADL-DWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFV 181 Query: 321 GEGGIP 326 G+ P Sbjct: 182 GDPAAP 187 >gi|21222507|ref|NP_628286.1| bifunctional enzyme deaminase/reductase [Streptomyces coelicolor A3(2)] gi|5918510|emb|CAB56387.1| putative bifunctional enzyme deaminase/reductase [Streptomyces coelicolor A3(2)] Length = 376 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 6/88 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL + E+ R GAT Y +LEPC+ P Sbjct: 256 AVVVAADGSELARGHSREGGDPVVHAEEAALAKVDPEDPRLPGATVYSSLEPCARRASRP 315 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSG 113 PCA+ I++ G+RRVV +PD V+G Sbjct: 316 APCARLILDAGVRRVVTAWREPDTFVAG 343 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 82/186 (44%), Gaps = 13/186 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 H+ L AVS D + G + ++ ++V +RA DAILVG GTV AD+P L Sbjct: 5 HVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPRLLVN 64 Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR- 261 R+ + P+++ + +L ++ T +++T +D A A Sbjct: 65 SAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTG--GDKVLLTTDDGARRARALGI 122 Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ + D D + L L RGV L+VEGG V + L D + L + + + Sbjct: 123 GADVVSLGADL-DWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAPLFV 181 Query: 321 GEGGIP 326 G+ P Sbjct: 182 GDPAAP 187 >gi|289643431|ref|ZP_06475551.1| bifunctional deaminase-reductase domain protein [Frankia symbiont of Datisca glomerata] gi|289506761|gb|EFD27740.1| bifunctional deaminase-reductase domain protein [Frankia symbiont of Datisca glomerata] Length = 224 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 91/200 (45%), Gaps = 12/200 (6%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R ++ L +A+S D I AG + ++ ++V +RA DAILVG T+ D+P L Sbjct: 3 QRPYVLLSVAMSVDGYIDDAGDRRLLLSNDADFDRVDEVRAGVDAILVGANTIRRDNPRL 62 Query: 208 TCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLA 257 R +E SP+++ L L ++ T + ++ D Sbjct: 63 LVRSAARREERVACGLPESPVKVTLTGLGDLDRGARFFTTGQVEKIVYAACPAADRARER 122 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 LA ++ D DL +L L RG+ L+VEGG+A+ F+ + LVD I L + Sbjct: 123 LAGVASVVDA--GDPIDLNVVLADLAARGIHRLMVEGGSAIHTRFLTAGLVDEIHLVIAP 180 Query: 318 IVIGEGGIPSPLEEGYLEKN 337 +G+ P + +G ++ Sbjct: 181 FFVGDPTAPRFVGDGVFPRH 200 >gi|311694828|gb|ADP97701.1| protein containing bacterial bifunctional deaminase-reductase, C-terminal domain [marine bacterium HP15] Length = 290 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 64/237 (27%), Positives = 101/237 (42%), Gaps = 33/237 (13%) Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT--RQVEKRS--HITLKIAVS 159 D V+++G G L Q E K L +L R V + ++ S Sbjct: 31 TDKEAVKLNGHGAWHLMQPAT-------GEAKDLLSVFLPLCRPVPDNGSPKVIGQLGQS 83 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 D I S I G +H +RA SDA++VG GT D+P LT R +P Sbjct: 84 LDGRIATVTGRSRFINGDDGITHLHRIRAVSDAVVVGAGTATTDNPRLTVRRT--SGRNP 141 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI------IYC--- 270 +R+++D H ++ DS + T AP + + V + KN +I I C Sbjct: 142 VRVVIDRHHRVP-DSHHLFTDGEAPTLRL------VAGTYEKAKNPSIGSGVTEIPCLGD 194 Query: 271 ----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D D + +L +L G+ + VEGG F+N+ L+D + + + ++IG G Sbjct: 195 AESEDAVDPRVILEVLADLGLKKVFVEGGGVTVSCFLNAGLLDRLHVMVAPMIIGSG 251 >gi|331695256|ref|YP_004331495.1| bifunctional deaminase-reductase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949945|gb|AEA23642.1| bifunctional deaminase-reductase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 231 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 59/191 (30%), Positives = 89/191 (46%), Gaps = 18/191 (9%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R H+ L AVS D I + ++ ++V +RA DAILVG T+ DDP L Sbjct: 4 RPHVLLSAAVSLDGCIDDVSRRRLILSNDADLDRVDEVRASVDAILVGANTIRTDDPRLL 63 Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTA-----LLAPVIIVTENDDPV 255 R + SP+++ L K+S DS+ + T + AP V + + V Sbjct: 64 VRSAARRAARVATGRAPSPVKVTLTRTGKISPDSRFLTTGDGDRVVYAPTSAVADVRERV 123 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A A + D D+ LL L RGV L+VEGG+ V F++S LVD + + Sbjct: 124 GAAA-----TVVGAGDPLDVTVLLDDLHRRGVRRLMVEGGSEVHTLFMSSGLVDELHVVF 178 Query: 316 SQIVIGEGGIP 326 + ++G+ G P Sbjct: 179 APFLVGQPGAP 189 >gi|294643957|ref|ZP_06721744.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CC 2a] gi|294807647|ref|ZP_06766440.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides xylanisolvens SD CC 1b] gi|292640729|gb|EFF58960.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CC 2a] gi|294445083|gb|EFG13757.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides xylanisolvens SD CC 1b] Length = 293 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPP 87 P V +I KDGI++ + HAE A+E+ + GAT TLEPC + + P Sbjct: 51 PKVGAVIAKDGIILAKAFKDEESSKHAERIAIEKLDKSTLNGATLVTTLEPCINIANNQP 110 Query: 88 ---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C IIE GI+ V++ + DP+ + +G + L + I V Sbjct: 111 LQSCTDLIIESGIKDVIIGILDPNGAIYCQGYEKLLENNINV 152 >gi|315585891|gb|ADU40272.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 35A] Length = 344 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 65/269 (24%), Positives = 109/269 (40%), Gaps = 46/269 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 + G LQ G++ + + + L + Q + + L + ++ D G Sbjct: 136 AKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYYHGK- 194 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 195 ------ITGQKSVVFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272 >gi|329938811|ref|ZP_08288207.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045] gi|329302302|gb|EGG46194.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045] Length = 379 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 38/88 (43%), Positives = 49/88 (55%), Gaps = 6/88 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE-AGEEAR--GATAYVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL + A +AR GAT Y +LEPC+ P Sbjct: 257 AVVVAADGTELARGFSREGGDPAVHAEEAALAKVAPGDARLAGATVYSSLEPCARRASRP 316 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSG 113 PCA+ I+ G RRVV +PD V G Sbjct: 317 VPCARLILAAGARRVVTAWREPDTFVPG 344 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 14/187 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+ L AVS D + G + ++G ++V +RA+SDAIL+G GT+ D+P L Sbjct: 5 HVLLSAAVSLDGFLDDTGPDRLLLSGPEDFDRVDQVRAESDAILIGAGTLRTDNPRLLVN 64 Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 GL E+ P+++ + L ++ T A + TE P L A Sbjct: 65 SPERRAKRVAAGLPEY-PLKVTVSASGDLDPAARFWHTG-GAKAVYTTEEAAPRLRAAL- 121 Query: 262 KKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +++++ + R + L + + V L+VEGG V + L D + L + ++ Sbjct: 122 PPDVDVVAPGAELRWREVLAHLGEEKDVRRLMVEGGGRVHTELLRQGLADELQLVVAPLL 181 Query: 320 IGEGGIP 326 +GE P Sbjct: 182 VGEADAP 188 >gi|292492106|ref|YP_003527545.1| bifunctional deaminase-reductase domain protein [Nitrosococcus halophilus Nc4] gi|291580701|gb|ADE15158.1| bifunctional deaminase-reductase domain protein [Nitrosococcus halophilus Nc4] Length = 364 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 62/263 (23%), Positives = 114/263 (43%), Gaps = 30/263 (11%) Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH---ITLKIAVSQDNMIGMAGCGSVPI 174 W +G + + + +++L + ++H ++ +A + D I A S I Sbjct: 108 WCYSRGPALPCHLLTAFRLYLPCLTGHHIASQNHSPWVSGHLAQTLDGKIAAASGHSQWI 167 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH------- 227 + + H LRA DA+LVG T+ D+P LT R +Q +P R++LD H Sbjct: 168 SNHADRKHAHRLRALHDAVLVGRSTIEKDNPRLTVR--EVQGENPDRVVLDRHCHLLAGE 225 Query: 228 -----FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK---KNINIIYCDCRDLKKLL 279 F ++ ++ + L V + V L R KN + I DLK +L Sbjct: 226 KLYRIFHEPGNNWLLHSGSLDKVTERYPIPEKVTPLPIRNQEGKNDSKIM----DLKAVL 281 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLE 335 + G+ S+ VEGG F+ + D + L+ + +++G G+P SP++ E Sbjct: 282 EAIWSIGIRSVFVEGGGKTLSLFLAAGRTDLLHLHIAPLLLG-SGLPSFQLSPVDR-IQE 339 Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358 + + Y ++ LE + ++ Sbjct: 340 GTYFHMTHFYLDKEILLECVPRH 362 >gi|156841575|ref|XP_001644160.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM 70294] gi|156114796|gb|EDO16302.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM 70294] Length = 242 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 16/191 (8%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 V+ + +TL A S D I I+ +K H LR D ILVG GTVLADDP Sbjct: 25 VKDKPFVTLTYAQSIDARIAAQKGERTVISHEETKTMTHYLRYHHDGILVGTGTVLADDP 84 Query: 206 ELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 L C+ E+SP II+D K + L + + + +P++ +A N Sbjct: 85 GLNCKWGKNCFENSPKPIIIDLKQKWKFTG-----SKLHQLYLNNQGKNPIVVVANEPIN 139 Query: 265 -------INIIYCDCR-DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFIN-SRLVDSIILY 314 + I + + D LL L + S++VEGGA V + + S L++S+I+ Sbjct: 140 KEEHVEYLTIPTTNGKFDWGLLLNALKTNFNLNSIMVEGGAVVINQLLTESHLINSLIVT 199 Query: 315 RSQIVIGEGGI 325 +G G+ Sbjct: 200 IGSTYLGNLGV 210 >gi|317179684|dbj|BAJ57472.1| riboflavin biosynthesis protein [Helicobacter pylori F30] Length = 344 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 84/341 (24%), Positives = 143/341 (41%), Gaps = 80/341 (23%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKVLRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166 + G LQ +G++ + +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIEGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224 G ITG S H RA D ++V T+ D+P L R + Q+ +P IL Sbjct: 190 YHHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQDKNPNIAIL 247 Query: 225 DPHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 K S+D SK+ AP +V +CD +DL Sbjct: 248 S---KRSIDPNSKVFS----APNRLVN------------------AFCDPKDLP------ 276 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + +G +EGG + S + +D+++L+ +I E Sbjct: 277 LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEA 313 >gi|308185276|ref|YP_003929409.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180] gi|308061196|gb|ADO03092.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180] Length = 344 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 54/215 (25%), Positives = 95/215 (44%), Gaps = 38/215 (17%) Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEARGATA 72 NPSVAC+++ K+ ++ PHAEV A + E E+ + + Sbjct: 25 NPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEKLEDPKTLSD 84 Query: 73 Y---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 85 FLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENEAKKGGLARL 144 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITG 176 ++ I+ R +E++ K L + R +E++ L K+A+ M G G ITG Sbjct: 145 QKARIETIICRNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHGK--ITG 197 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 S H RA D +++ T+ D+P L R Sbjct: 198 QKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARF 232 >gi|29830662|ref|NP_825296.1| riboflavin/cytosine deaminase [Streptomyces avermitilis MA-4680] gi|29607774|dbj|BAC71831.1| putative diaminohydroxyphosphoribosylaminopyrimi dine deaminase (N-terminal)/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Streptomyces avermitilis MA-4680] Length = 376 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 14/127 (11%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE-AGEEAR--GATAYVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL + E+ R GAT Y +LEPC+ P Sbjct: 256 AVIVAADGTELARGHSREGGDPVVHAEEAALAKLDAEDPRLAGATVYSSLEPCARRTSRP 315 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 PCA+ I++ G+RRVV +PD V+ G++V E + L Y R Sbjct: 316 RPCARLILDAGVRRVVTAWREPDTFVAA-----ADGSGVLV---AEGADVVVLPEYEARA 367 Query: 146 VEKRSHI 152 H+ Sbjct: 368 TAPNRHL 374 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 52/217 (23%), Positives = 88/217 (40%), Gaps = 16/217 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ L AVS D + G + ++G ++V +RA SDAILVG GT+ D+P L Sbjct: 5 YVLLSAAVSLDGFLDDTGPDRLLLSGPADFDRVDEVRAASDAILVGAGTLRTDNPRLLVN 64 Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 GL E+ P+++ + L D++ T V + + + L Sbjct: 65 SAERRAARVAEGLPEY-PLKVTVTASGDLDPDAQFWHTGGEKAVYTTDKGAERLRELGI- 122 Query: 262 KKNINIIYCDCRDLKKLLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +++ + + +GR GV L+VEGG V + L D + L + + Sbjct: 123 --AADVVAVGAELEWRAVLDHLGRVKGVRRLMVEGGGRVHTQLLQQGLADELQLAVAPLF 180 Query: 320 IGEGGIPSPL-EEGYLEKNFMCVRRDYFGSDVCLEYI 355 +G+ P GY V G V + Y+ Sbjct: 181 VGQAQAPRMFGSGGYPPGRMRLVETRPVGDVVLMRYV 217 >gi|237716221|ref|ZP_04546702.1| CMP/dCMP deaminase [Bacteroides sp. D1] gi|262407829|ref|ZP_06084377.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22] gi|229443868|gb|EEO49659.1| CMP/dCMP deaminase [Bacteroides sp. D1] gi|262354637|gb|EEZ03729.1| CMP/dCMP deaminase [Bacteroides sp. 2_1_22] Length = 276 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 4/102 (3%) Query: 29 PSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPP 87 P V +I KDGI++ + HAE A+E+ + GAT TLEPC + + P Sbjct: 34 PKVGAVIAKDGIILAKAFKDEESSKHAERIAIEKLDKSTLNGATLVTTLEPCINIANNQP 93 Query: 88 ---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C IIE GI+ V++ + DP+ + +G + L + I V Sbjct: 94 LQSCTDLIIESGIKDVIIGILDPNGAIYCQGYEKLLENNINV 135 >gi|77164589|ref|YP_343114.1| bifunctional deaminase-reductase-like [Nitrosococcus oceani ATCC 19707] gi|254433288|ref|ZP_05046796.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Nitrosococcus oceani AFC27] gi|76882903|gb|ABA57584.1| bifunctional deaminase-reductase-like protein [Nitrosococcus oceani ATCC 19707] gi|207089621|gb|EDZ66892.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Nitrosococcus oceani AFC27] Length = 364 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 63/254 (24%), Positives = 113/254 (44%), Gaps = 35/254 (13%) Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQV--EKR-SHITLKIAVSQDNMIGMAGCGSVPI 174 W+ +G + + + +++L + +KR I+ +A + D I A S I Sbjct: 108 WIHSRGPRLPSHLLTAFRLYLPCLAGHHIASQKRLPWISAHLAQTLDGKIAAASGHSQWI 167 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD--------- 225 + + + H LRA DA+LVG GTV D+P LT R + +P R+ILD Sbjct: 168 SNYADRKHAHRLRALHDAVLVGRGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLTGE 225 Query: 226 -PH--FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR----KKNINIIYCDCRDLKKL 278 P+ F+ + ++ + L + + V+ L R +KN ++ DLK + Sbjct: 226 KPYRIFQEPGHNWLLHSDSLNKIETHHAIPEKVIPLGVRNQAGEKNGKLM-----DLKAV 280 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-------PLEE 331 L + G+ S+ VEGG F+ D + L+ + +++G G+PS ++E Sbjct: 281 LETIWSLGIRSVFVEGGGKTLSFFLAGGQTDLLHLHIAPLLLG-SGLPSFQLPPVARIQE 339 Query: 332 G-YLEKNFMCVRRD 344 G Y C+ ++ Sbjct: 340 GTYFHMTHFCLDKE 353 >gi|261838779|gb|ACX98545.1| riboflavin-specific deaminase [Helicobacter pylori 51] Length = 344 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 46/269 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 191 CHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272 >gi|254780015|ref|YP_003058122.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38] gi|254001928|emb|CAX30181.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38] Length = 344 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 112/260 (43%), Gaps = 47/260 (18%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE------------ 65 W H L NPSVAC+++ K+ ++ HAEV A + A + Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLKNDLEK 75 Query: 66 -----------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 + R A+ +TLEPC+ YG++P C++ + +RVV+ ++ + Sbjct: 76 LEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G + I+ R +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKACIETIICRNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224 G ITG S H RA D +++ T+ D+P L R + Q +P IL Sbjct: 191 HHGK--ITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYQHKNPNIAILS 248 Query: 225 ----DPHFK-LSLDSKIIKT 239 DPH K S ++++ T Sbjct: 249 KRSIDPHSKVFSAPNRLVNT 268 >gi|238878329|gb|EEQ41967.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida albicans WO-1] Length = 302 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 57/239 (23%), Positives = 98/239 (41%), Gaps = 61/239 (25%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ DAILVGIGT+LADDP+L Sbjct: 32 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91 Query: 208 TCR--LNGLQE------HSPMRIILDPHFKLSLDSK------------------------ 235 CR ++ H +++DP+ K Sbjct: 92 NCRYIFESVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTTKKKKNSE 151 Query: 236 -----IIKTALLAPVIIVTENDDP-------VLALAFRKKNINIIYCDCRDLK------K 277 + A LAP II+ E+ P V+ + + ++ K + Sbjct: 152 SSPVPVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-----------SRLVDSIILYRSQIVIGEGGI 325 +L L G+ S+++EGGA + + ++ +L+DS+I+ + + +G G+ Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDQKLIDSVIITIAPVFLGCNGV 270 >gi|321249886|ref|XP_003191610.1| hypothetical protein CGB_A7040W [Cryptococcus gattii WM276] gi|317458077|gb|ADV19823.1| Hypothetical protein CGB_A7040W [Cryptococcus gattii WM276] Length = 198 Score = 59.3 bits (142), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 24/166 (14%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKTA 240 H LRA DAIL+G+ T++ DDP L L S P +ILDP + L S+I+ Sbjct: 4 THQLRAIHDAILIGVHTLVLDDPRLQTNLLPPTHASPPPQPLILDPSLRFPLTSRILNEW 63 Query: 241 LLAPVI---------------IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 P + + +E + V R + + L +IL Sbjct: 64 NTKPAMRGQTLKQPWILCGSNVPSERINEVEQAGARVVPVPLDSDGRIPPSSLPSILTSL 123 Query: 286 GVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGG 324 G+ S+++EGG+ V SF++ S+LVD++++ + IGEGG Sbjct: 124 GLRSVMIEGGSRVLSSFLHTLKRDDGSKLVDTVVVTVAPTFIGEGG 169 >gi|312194017|ref|YP_004014078.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] gi|311225353|gb|ADP78208.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] Length = 235 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 78/193 (40%), Gaps = 16/193 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A S D I A + ++ ++V +RA DAILVG GT+ ADDP+L Sbjct: 3 RPYVVLSCATSIDGYIDDASETRLRLSNEADFDRVDEVRAGCDAILVGAGTIRADDPKLL 62 Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 R GL H P+++ LDP + T V+ + Sbjct: 63 IRSPARRRARMSRGLPSH-PLKVTLTATGDLDPSARFFTAGDPDGTDGAGQVVYTATDAA 121 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 + D DL +L L RGV LLVEGG AV F+ L D + L Sbjct: 122 ARARARLGAVATVVEAGDPIDLPTVLADLATRGVARLLVEGGGAVHTQFLTEDLADELHL 181 Query: 314 YRSQIVIGEGGIP 326 + +G+ P Sbjct: 182 VVAPFFVGDPRAP 194 >gi|219122530|ref|XP_002181596.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406872|gb|EEC46810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 281 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 93/190 (48%), Gaps = 22/190 (11%) Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQEHS-PMRIILDP 226 + P++G S H +RA D +L+G T+ D+P LT RL + L+ H+ P I+LD Sbjct: 90 NFPLSGSDSLLLTHAIRASHDGVLIGGKTLSIDNPRLTNRLWDHDSLKLHAQPTSIVLDT 149 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKLL 279 H ++ S L P+I ++ A + ++ +++ CR DL +L Sbjct: 150 HLN-NIQSLGDSMRLKHPIICCSKE----AASSCKELPSSVVLLPCRCSKNGQIDLGDML 204 Query: 280 -TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----L 334 + +G G+ SL++EGG + SF++ +LVD + + + +G GI +GY Sbjct: 205 HKLYIGYGIKSLMIEGGPTLLKSFLDDQLVDCLCITIAPKFLGS-GIGVSTNKGYHLPVS 263 Query: 335 EKNFMCVRRD 344 NF V +D Sbjct: 264 TTNFYIVGKD 273 >gi|6822155|emb|CAB71026.1| riboflavin-specific deaminase / reductase [Helicobacter pylori] Length = 344 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 47/260 (18%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLDILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGFARLQKARIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIIL- 224 G ITG S H RA D ++V T+ D+P L R G Q +P IL Sbjct: 191 YHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCGSFYQHKNPNIAILS 248 Query: 225 ----DPHFK-LSLDSKIIKT 239 +PH K S ++++ T Sbjct: 249 KRPINPHSKVFSAPNRLVNT 268 >gi|217076035|gb|ACJ86376.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc mesenteroides] Length = 122 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 49/101 (48%), Gaps = 2/101 (1%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 T NP V ++VKDG VI G HAE+ A + GAT YVT EP S Sbjct: 22 TFENPRVGAVLVKDGQVITTPYHEKFGEAHAEINAFNRVKNKTEFLGATLYVTFEPNSPQ 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A I G +RVVV DP+ +G+G++ L G Sbjct: 82 GKVGSWAVQIQNWGQKRVVVGKIDPNPSTNGKGIKMLRSVG 122 >gi|6572110|emb|CAB63093.1| riboflavin-specific deaminase [Bartonella quintana] Length = 87 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 +L +L RG+ S+L+EGG F+N+ VD +I + + +++G+ I +P YL + Sbjct: 2 ILRLLYQRGINSVLLEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ- 60 Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQEL 364 F V FG+D C ++ K LC QEL Sbjct: 61 FYEVETRMFGNDRCYKWRRKTLCSQEL 87 >gi|304315578|ref|YP_003850723.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777080|gb|ADL67639.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 143 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 63/123 (51%), Gaps = 15/123 (12%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++VKDGI+IG+G T HAE+ A+++A + A+ YVTLEPC Sbjct: 19 VGAVVVKDGIIIGKGHNLKETEKDATQHAEINAIKDACKNIGDWRLNDASLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 P CA IIE I+RV + + D +G +L++K + +ME + K + + Sbjct: 77 ----PMCAGAIIESRIKRVYIGAESHDSGAAGTVYDFLNKKVDVYFGIMEDDCKKLISDF 132 Query: 142 LTR 144 +R Sbjct: 133 FSR 135 >gi|328545540|ref|YP_004305649.1| Bifunctional deaminase-reductase domain protein [polymorphum gilvum SL003B-26A1] gi|326415281|gb|ADZ72344.1| Bifunctional deaminase-reductase domain protein [Polymorphum gilvum SL003B-26A1] Length = 262 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 82/174 (47%), Gaps = 12/174 (6%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++ S D I S I G + +H LRA DA+++G GT +ADDP+LT RL + Sbjct: 59 QLGQSLDGRIATVNGQSKYINGPGCLSHLHRLRAVCDAVVIGAGTAIADDPQLTVRL--V 116 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII-YCDCR 273 P R+++DP +L K ++ ++ E + +++ II R Sbjct: 117 DGPHPARVLIDPRGRLPATLKALRDDGTRRFVVTLEGTRLNV-----PESVEIIRLAGDR 171 Query: 274 D----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D + ++ L G LLVEGG+ F++S +D + L + ++IG G Sbjct: 172 DGHLAPRAIVEALASHGFRRLLVEGGSWTISRFLSSGCLDRLHLLIAPMIIGAG 225 >gi|68489028|ref|XP_711627.1| hypothetical protein CaO19.13697 [Candida albicans SC5314] gi|68489169|ref|XP_711559.1| hypothetical protein CaO19.6341 [Candida albicans SC5314] gi|46432872|gb|EAK92335.1| hypothetical protein CaO19.6341 [Candida albicans SC5314] gi|46432945|gb|EAK92405.1| hypothetical protein CaO19.13697 [Candida albicans SC5314] Length = 304 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 38/63 (60%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ DAILVGIGT+LADDP+L Sbjct: 32 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91 Query: 208 TCR 210 CR Sbjct: 92 NCR 94 >gi|108563832|ref|YP_628148.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1] gi|107837605|gb|ABF85474.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1] Length = 344 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/215 (25%), Positives = 94/215 (43%), Gaps = 38/215 (17%) Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE--------------------- 65 NPSVAC+++ K+ ++ PHAEV A + A + Sbjct: 25 NPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEKLEDPKTLSD 84 Query: 66 --EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + R A+ +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 85 FLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARL 144 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITG 176 + ++ R +E++ K L + R +E++ L K+A+ M G G ITG Sbjct: 145 QKAHIETMICRNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYYHGK--ITG 197 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 S H RA D ++V T+ D+P L R Sbjct: 198 PKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDTRF 232 >gi|308064267|gb|ADO06154.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Sat464] Length = 344 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 60/250 (24%), Positives = 103/250 (41%), Gaps = 46/250 (18%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 + G L+ +G++ + + + L + Q + + L + ++ D G Sbjct: 136 AKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHGK- 194 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224 ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 195 ------ITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPNIAILS 248 Query: 225 ----DPHFKL 230 DPH K+ Sbjct: 249 KHSIDPHSKV 258 >gi|257483266|ref|ZP_05637307.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 160 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 32/168 (19%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 ++ V LRAQS +L G TVLAD LT R + L P+R+++D + Sbjct: 1 RSAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLR 60 Query: 230 LSLDSKIIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRDLKKL 278 + LD+ + ++VT E +LALA ++ DL+KL Sbjct: 61 VPLDAPFFQAG---SALVVTCAAASARGRYQEEGHEMLALADSAGHV--------DLRKL 109 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + L RGV +LVE G +A +F LVD ++ + +G P Sbjct: 110 MVELATRGVNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 157 >gi|288920814|ref|ZP_06415112.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp. EUN1f] gi|288347773|gb|EFC82052.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp. EUN1f] Length = 242 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 54/196 (27%), Positives = 80/196 (40%), Gaps = 14/196 (7%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 V R H+ L A+S D I + ++ ++V +RA DAILVG GTV DDP Sbjct: 11 VPVRPHVVLSCAMSLDGRIDDCSPSRLILSSPADLDRVDEVRAGCDAILVGAGTVRRDDP 70 Query: 206 ELTCRLNGLQEH--------SPMRIIL------DPHFKLSLDSKIIKTALLAPVIIVTEN 251 L R ++ +P+R +L DP ++ D Sbjct: 71 GLAVRSQRRRDARTAAGRTPTPLRAVLTREGDLDPAARIFRDGADRVVYRATAGASGEAA 130 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 A + ++ L LL L GRGV LLVEGG + +F+ + LVD + Sbjct: 131 ASGGAAASPLAAVATVVDLPEPPLASLLRDLTGRGVRRLLVEGGTTIHTAFLTAGLVDEL 190 Query: 312 ILYRSQIVIGEGGIPS 327 L + +GE P+ Sbjct: 191 HLVVAPFFVGEAAAPT 206 >gi|261840180|gb|ACX99945.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 52] Length = 344 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 71/270 (26%), Positives = 116/270 (42%), Gaps = 48/270 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166 + G LQ G++ + +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIDGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAIL 247 Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 248 SKH-PIDPNSKVFS----APNRLVNAFYDP 272 >gi|317182710|dbj|BAJ60494.1| riboflavin biosynthesis protein [Helicobacter pylori F57] Length = 344 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 72/270 (26%), Positives = 116/270 (42%), Gaps = 48/270 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166 + G LQ +GI+ + +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIEGIVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL 224 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAIL 247 Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 248 SKH-PIDPNSKVFS----APNRLVNAFYDP 272 >gi|218514635|ref|ZP_03511475.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli 8C-3] Length = 237 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY++ +VIGE Sbjct: 139 VEIVYCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEA 197 >gi|213401993|ref|XP_002171769.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Schizosaccharomyces japonicus yFS275] gi|211999816|gb|EEB05476.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Schizosaccharomyces japonicus yFS275] Length = 244 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 94/221 (42%), Gaps = 42/221 (19%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHS 218 G G + ++G S H LRA +D I+VG TV D+P LT RL + Sbjct: 30 GKPNPGQLVLSGHESFVMTHKLRAHADGIMVGSTTVRVDNPSLTARLPDPAHDTLPLDQQ 89 Query: 219 PMRIILDPHFKLSLDS-KIIKTALL----APVIIVTE------NDDPVL----------- 256 P I++D L +S K+IK A L AP +IV+ DP++ Sbjct: 90 PRPILVDSSLSLDYESLKVIKLARLGVGKAPYVIVSPKTESAAKSDPIIEQKVNVITRVG 149 Query: 257 -ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD-SIILY 314 L R + + + + L +L + G+ L+VEGGA + + S VD +I+ Sbjct: 150 GKLIVRATDNTVRFHEYVALDQLREL----GIRRLMVEGGARLLSHALKSECVDAAIVTI 205 Query: 315 RSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 Q V + GI +P N+ C + FG DV E Sbjct: 206 SPQFVDPLSTIGIDAP------SLNWPCKSWEMFGDDVVFE 240 >gi|188528275|ref|YP_001910962.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470] gi|188144515|gb|ACD48932.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470] Length = 344 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 46/269 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 + G L+ +G++ + + + L + Q + + L + ++ D G Sbjct: 136 AKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYCHGK- 194 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 195 ------ITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272 >gi|159042516|ref|YP_001541768.1| deaminase-reductase domain-containing protein [Caldivirga maquilingensis IC-167] gi|157921351|gb|ABW02778.1| bifunctional deaminase-reductase domain protein [Caldivirga maquilingensis IC-167] Length = 211 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 8/139 (5%) Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DA +VG TV+ D T + +R+++D F++ L+SK + AP + Sbjct: 41 RDEVDATIVGAQTVIDVDGTYTPKTG----KQILRVLIDGAFRVPLESKFFNSP--APAL 94 Query: 247 IVTENDDPVLALAF-RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P + RK I ++ D + D++ LL+ L RG+ +LVEGG AV F + Sbjct: 95 VAVTERAPRAKIELARKAGIEVMEFDKQVDVEVLLSKLTERGIKKVLVEGGGAVFWQFFS 154 Query: 305 SRLVDSIILYRSQIVIGEG 323 L+D + L + ++G+G Sbjct: 155 RNLIDEVRLTIAPFMMGKG 173 >gi|217034301|ref|ZP_03439718.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10] gi|216943273|gb|EEC22738.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10] Length = 344 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 139/340 (40%), Gaps = 78/340 (22%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 191 CHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283 K S+D SK+ AP +V +CD +DL + Sbjct: 249 ---KRSIDPNSKVFS----APNRLVN------------------AFCDPKDLP------L 277 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +G +EGG + S + +D+++L+ +I E Sbjct: 278 EKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEA 313 >gi|161529120|ref|YP_001582946.1| deaminase-reductase domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340421|gb|ABX13508.1| bifunctional deaminase-reductase domain protein [Nitrosopumilus maritimus SCM1] Length = 218 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/185 (31%), Positives = 90/185 (48%), Gaps = 20/185 (10%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + R H+ L A+S D I S ++ ++H LR+ DAIL+G T D+P Sbjct: 3 KSRPHVILSGAISVDGKIATKTNDS-KLSSQKDIQRLHKLRSSVDAILIGKNTASRDNPL 61 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN-- 264 LT R ++ +P+RI+LD +S SKI++++ P II ++ KKN Sbjct: 62 LTVR--HVKGKNPIRIVLDSKGTISKTSKILQSSNKVPTIIA-------ISKKITKKNLE 112 Query: 265 ------INIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + II D +LK LL L + + ++LVEGG V F+ L D +IL S Sbjct: 113 KLEKFPVEIISTGNDSVNLKLLLKKLSKKKIKTILVEGGGTVNWEFVKHNLFDEMILTIS 172 Query: 317 QIVIG 321 ++G Sbjct: 173 PYLLG 177 >gi|308062769|gb|ADO04657.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Cuz20] Length = 344 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/269 (23%), Positives = 110/269 (40%), Gaps = 46/269 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 + G L+ +G++ + + + L + Q + + L + ++ D G Sbjct: 136 AKKGGLARLKKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYCHGR- 194 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 195 ------ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272 >gi|304406859|ref|ZP_07388514.1| bifunctional deaminase-reductase domain protein [Paenibacillus curdlanolyticus YK9] gi|304344392|gb|EFM10231.1| bifunctional deaminase-reductase domain protein [Paenibacillus curdlanolyticus YK9] Length = 219 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 9/144 (6%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H R I+VG T+ D+P LT R + +P+RI+ + LDS I+ Sbjct: 38 IHQFRGHVQGIMVGKNTIHNDNPFLTNRYE--ENKNPIRIVPTATMDIDLDSNILSDD-- 93 Query: 243 APVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAA 297 IIVT ++DD + + R K+ + D D +L L G+T L+VEGG Sbjct: 94 GRTIIVTTELGKDDDKIEQIRARGKDCIVCGHDKVDFAELFRRLESEFGITDLMVEGGGF 153 Query: 298 VAHSFINSRLVDSIILYRSQIVIG 321 + + L D IIL + I+IG Sbjct: 154 LNWHVFDQDLADEIILMQLPIIIG 177 >gi|111221324|ref|YP_712118.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a] gi|111148856|emb|CAJ60534.1| Putative riboflavin/cytosine deaminase (partial) [Frankia alni ACN14a] Length = 245 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/214 (26%), Positives = 91/214 (42%), Gaps = 39/214 (18%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ A+S D I + ++G +V +RA DAILVG TV DDP L Sbjct: 19 RPYVICSCAMSLDGRIDDCSQARLILSGPADLERVDEVRAGCDAILVGAETVRRDDPRLA 78 Query: 209 CRLN---------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 R GL +P++++L L S++ T DPV L Sbjct: 79 VRAEHRRAARVAAGLPP-TPVKVVLSGGGDLDPRSRVFGT-------------DPVDTLV 124 Query: 260 FRK-------------KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +R+ ++++ R D+ +L L RGV LLVEGG +V +F+ Sbjct: 125 YRRAGSAAPPPSWSAAPRVSVVDLPGRPWVDVAAVLADLDRRGVRRLLVEGGTSVHTAFL 184 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 + LVD + L + +GE P+ + G ++ Sbjct: 185 TAGLVDELHLAVAPFFVGERDAPAFVGPGAFPQD 218 >gi|82791814|gb|ABB90836.1| putative bifunctional enzyme deaminase/reductase [Streptomyces davawensis] Length = 375 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/184 (26%), Positives = 80/184 (43%), Gaps = 10/184 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 ++ L AVS D + G + ++ ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64 Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R+ P+++ + L +K T V+ T+ A Sbjct: 65 SPERRAARVAAGHPEYPLKVTVSGSGDLDPAAKFWHTG-GEKVVYTTDKGARTARAAGLA 123 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 ++ + D D ++LLT L RGV L+VEGG + + L D + L + + +G+ Sbjct: 124 ADVVALGADL-DWRRLLTDLHARGVHRLMVEGGGTIHTQLLQEGLADELQLVLAPLFVGD 182 Query: 323 GGIP 326 P Sbjct: 183 PSAP 186 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 42/109 (38%), Positives = 58/109 (53%), Gaps = 11/109 (10%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAG-EEAR--GATAYVTLEPCSHYGRSP 86 A ++ DG + RG + G P HAE AL + E+ R AT Y +LEPC+H P Sbjct: 255 AVVVAADGTELARGHSREGTDPVVHAEEAALAKIDPEDPRLPSATVYSSLEPCAHRSSRP 314 Query: 87 -PCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGIIVDRMME 131 PCA+ I++ G+RRVV +PD V G GL L+ G+ V + E Sbjct: 315 APCARLILDAGVRRVVTAWREPDTFVVAADGTGL--LTAAGVDVLELPE 361 >gi|154150451|ref|YP_001404069.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Methanoregula boonei 6A8] gi|153999003|gb|ABS55426.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoregula boonei 6A8] Length = 226 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 88/187 (47%), Gaps = 12/187 (6%) Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204 R H+ + ++ D + + G S + +++ +H RA DAI+VG T+ D+ Sbjct: 7 RPHVLMMSEITADGKLTLKKGASSKILMKYMAHETEILLHETRAAYDAIMVGANTIRIDN 66 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKK 263 LT RL + SP+R+I + LD+ ++ AP +I P + A R K Sbjct: 67 SFLTVRL--VPGKSPLRVIPCSMADIPLDANVLGPD--APTLIAVSEKAPKDRVEAIRAK 122 Query: 264 NINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +N+ D +L L+ IL + GV L++EGG + ++ +LVD I L ++ Sbjct: 123 GVNVAVAGKDHVELSLLMQILHDKYGVKKLMIEGGPTLNWHMLHDKLVDEIRLIHLPFIV 182 Query: 321 GEGGIPS 327 G PS Sbjct: 183 GGSDTPS 189 >gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus petrolearius DSM 11571] Length = 227 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 15/182 (8%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H RA+ DAI+VG T+ D+ LT R ++ SP+R+I + +S ++ Sbjct: 45 LHKTRAEYDAIMVGSNTINIDNSFLTVR--SVKGKSPLRVIPSSRAAIPPESNVLGPD-- 100 Query: 243 APVII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILV-GRGVTSLLVEGGAA 297 AP +I V++ P K +++ C D DL L+ LV GV+ L++EGG Sbjct: 101 APTLIAVSKKASPENIRILEDKGADVV-CVGEDKVDLPLLMKTLVENYGVSKLMIEGGPT 159 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCVRRDYF--GSDVCL 352 + + + RLVD I L ++G PS + ++E F ++Y+ G+++ Sbjct: 160 LNYYMLQDRLVDEIRLIHLPFIVGGSDTPSLVGGMHIESEEEMFSLQLKNYYMCGTNLVT 219 Query: 353 EY 354 EY Sbjct: 220 EY 221 >gi|88813576|ref|ZP_01128809.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] gi|88789205|gb|EAR20339.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] Length = 88 Score = 58.2 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/81 (38%), Positives = 45/81 (55%) Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M + + + R + ++ K+A+S D MA S IT ++ VH L+A+ Sbjct: 1 MAEQAQTLNPGFFKRMLTGLPYLRCKLAMSLDGRTAMASGESRWITAAAARGDVHHLQAR 60 Query: 190 SDAILVGIGTVLADDPELTCR 210 SDA+L G GTVLADDP+LT R Sbjct: 61 SDALLTGHGTVLADDPQLTAR 81 >gi|317010121|gb|ADU80701.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori India7] Length = 344 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 66/260 (25%), Positives = 111/260 (42%), Gaps = 47/260 (18%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C++ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G + I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKACIETIICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIIL- 224 G ITG S H RA D ++V T+ D+P L R Q +P IL Sbjct: 191 YHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDRFYQHKNPNIAILS 248 Query: 225 ----DPHFK-LSLDSKIIKT 239 +PH K S+ ++++ T Sbjct: 249 KRPINPHSKVFSVPNRLVNT 268 >gi|134107195|ref|XP_777728.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260424|gb|EAL23081.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var. neoformans B-3501A] Length = 198 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 77/165 (46%), Gaps = 24/165 (14%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS--PMRIILDPHFKLSLDSKIIKT-- 239 H LRA DAILVG+ T++ DDP L L S P +ILDP + L S+I+ Sbjct: 5 HHLRAIHDAILVGVHTLVLDDPRLQTNLLPPSHASPPPQPLILDPSLRFPLTSRILNEWN 64 Query: 240 --------ALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRG 286 L P I+ + D + + + + D L +IL G Sbjct: 65 TKPALRGRTLKQPWILCGPDVSSDRIHEVEQAGARVVPVPLDPNGRIPPSSLPSILTSLG 124 Query: 287 VTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGG 324 + S++VEGG+ V SF++ S+LVDS+++ + IG+GG Sbjct: 125 LRSVMVEGGSRVLSSFLHTLKRDDGSKLVDSVVVTVAPTFIGQGG 169 >gi|225569894|ref|ZP_03778919.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM 15053] gi|225161364|gb|EEG73983.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM 15053] Length = 159 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 17/131 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 ++S D +FM A++ + L T + C+IV +G +IGRG T HAE+ Sbjct: 1 MNSVDEKFMKEAIKQAGKAYALNET--PIGCVIVYEGRIIGRGYNRRNTDKNTLAHAEIT 58 Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + G T YVTLEPC P CA I++ + RVVV +P +G Sbjct: 59 AIRKASRKMGDWRLEGCTLYVTLEPC------PMCAGAIVQSRMDRVVVGCMNPKAGCAG 112 Query: 114 RGLQWLSQKGI 124 L L +G Sbjct: 113 SVLNVLQTEGF 123 >gi|261417404|ref|YP_003251087.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373860|gb|ACX76605.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 210 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 62/143 (43%), Gaps = 19/143 (13%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59 SS D +FM ALR + + + C+IVKDG+VIG+G HAE+ A Sbjct: 49 SSEDEKFMRMALR--QAQIAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIA 106 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + A G T YVTLEPC P CA I+ + R+V PD R G Sbjct: 107 IGTAASTLDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIV--YGSPDSRFGGC 158 Query: 115 GLQWLSQKGIIVDRMMESEGKIF 137 G G + R +E G I Sbjct: 159 GTTIDVITGNALKRAVEVTGGIL 181 >gi|212536738|ref|XP_002148525.1| riboflavin biosynthesis protein Rib7, putative [Penicillium marneffei ATCC 18224] gi|210070924|gb|EEA25014.1| riboflavin biosynthesis protein Rib7, putative [Penicillium marneffei ATCC 18224] Length = 351 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 48/90 (53%), Gaps = 10/90 (11%) Query: 134 GKIFLHAYL---------TRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + FL +YL T+Q E R TL A S D+ + +A ++G SK Sbjct: 15 SRPFLDSYLPPLPDDKDTTKQDELSRPFTTLTFATSLDSSLSLAPGVRTTLSGPQSKAMT 74 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNG 213 H LR + +AIL+G+GT +ADDP L CR+ G Sbjct: 75 HYLRFRHEAILIGVGTAIADDPGLNCRIEG 104 >gi|332674278|gb|AEE71095.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 83] Length = 344 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 81/338 (23%), Positives = 138/338 (40%), Gaps = 74/338 (21%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ +V +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLKKARIDGVVCEGLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA D ++V T+ D+P L R + Q +P IL Sbjct: 191 YHGK--ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 H + +SK+ AP +V DP +DL + + Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP------LEK 279 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G +EGG + S + +D+++L+ +IGE Sbjct: 280 GFN--FIEGGWELFESLRDK--IDTLLLHSHASMIGEA 313 >gi|239930347|ref|ZP_04687300.1| riboflavin/cytosine deaminase [Streptomyces ghanaensis ATCC 14672] gi|291438692|ref|ZP_06578082.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis ATCC 14672] gi|291341587|gb|EFE68543.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis ATCC 14672] Length = 377 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 54/102 (52%), Gaps = 11/102 (10%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL + + R ATA Y +LEPC+ P Sbjct: 256 AVVVAADGTELARGHSREGGDPVVHAEEAALAKTDPTDPRLATATVYSSLEPCARRASRP 315 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 PCA+ I++ GIRRVV +PD V G G++VD Sbjct: 316 APCARLILDAGIRRVVTAWREPDTFVPG-----ADGSGVLVD 352 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 80/185 (43%), Gaps = 11/185 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC- 209 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R+ + P+++ + L ++ T ++ T + A A Sbjct: 65 SPERRADRVARGRPEYPLKVTVSGSGDLDPAARFWHTG--GEKVLYTTDRGAERARAHGL 122 Query: 263 KNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + D ++LL L RGV L+VEGG V + L D + L + +++G Sbjct: 123 AADVVPLGPELDWRRLLEHLHAVRGVRRLMVEGGGLVHTQLLTQGLADELQLVLAPLLVG 182 Query: 322 EGGIP 326 + P Sbjct: 183 DPDAP 187 >gi|308183608|ref|YP_003927735.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4] gi|308065793|gb|ADO07685.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4] Length = 344 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 67/269 (24%), Positives = 110/269 (40%), Gaps = 46/269 (17%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------------- 63 W H L NPSVAC+++ K+ ++ PHAEV A + A Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLKNDLEK 75 Query: 64 ---------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKILSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 + G ++ I+ +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLKKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDY 190 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILD 225 G ITG S H RA + ++V T+ D+P L R + Q +P IL Sbjct: 191 HHGK--ITGPKSVIFTHNQRAICETLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDP 254 H + +SK+ AP +V DP Sbjct: 249 KH-SIDPNSKVFS----APNRLVNAFYDP 272 >gi|300114535|ref|YP_003761110.1| bifunctional deaminase-reductase domain-containing protein [Nitrosococcus watsonii C-113] gi|299540472|gb|ADJ28789.1| bifunctional deaminase-reductase domain protein [Nitrosococcus watsonii C-113] Length = 364 Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 32/217 (14%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 I+ +A + D I A S I+ + + H LRA DA+LVG GTV D+P LT R Sbjct: 145 ISTHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVGRGTVEKDNPRLTVR- 203 Query: 212 NGLQEHSPMRIILD----------PH--FKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + +P R+ILD P+ F+ + ++ + L + V+ L Sbjct: 204 -EVPGENPKRVILDRQCHLLAGEKPYRIFQEPGHNWLLHSDSLHKIETHYAIPRKVIPLG 262 Query: 260 FR----KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 R +KN ++ DLK +L + G+ S+ VEGG+ F+ + + L+ Sbjct: 263 VRDQAGEKNGKLM-----DLKAILETIWSLGIRSVFVEGGSKTLSFFLAGGQTNLLHLHI 317 Query: 316 SQIVIGEGGIPS-------PLEEG-YLEKNFMCVRRD 344 + +++G G+PS ++EG Y C+ ++ Sbjct: 318 APLLLG-SGLPSFQLPPVARIQEGTYFHMTHFCLDKE 353 >gi|54022042|ref|YP_116284.1| putative reductase/deaminase [Nocardia farcinica IFM 10152] gi|54013550|dbj|BAD54920.1| putative reductase/deaminase [Nocardia farcinica IFM 10152] Length = 373 Score = 57.4 bits (137), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 83/187 (44%), Gaps = 11/187 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207 R ++ L A+S D + G + ++ ++V +RA+SDAILVG T+ DDP L Sbjct: 4 RPYVLLSAAMSLDGHLDDVGPERLRLSDAADFDRVDRVRAESDAILVGAQTLRRDDPRLL 63 Query: 208 --------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 G EH P+++ + +L ++ A ++ T L Sbjct: 64 VADQARRAARVAAGKPEH-PLKVTVTATGRLDAGLRVWHQGG-AKLVYTTAAGAAALGDT 121 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ + DL LL L RGV L+VEGG V +F+ + L D + L + ++ Sbjct: 122 LTGLAEVVVLGETIDLGALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAPLL 181 Query: 320 IGEGGIP 326 +G G P Sbjct: 182 VGAAGAP 188 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 63/141 (44%), Gaps = 14/141 (9%) Query: 16 RFSRWHVGLTSTNP------SVACLIVKDGIVIGRGVTAYGGCP-HAEVQAL---EEAGE 65 RF R + L +P SV +IV DG I G + HAE AL + Sbjct: 230 RFLRRAIELAHASPPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAALNKLDPRDP 289 Query: 66 EARGATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQK 122 AT Y TLEPCS + PPC I+ GI RVV+ +P V G++ L + Sbjct: 290 RLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCVGVEKLREH 349 Query: 123 GIIVDRMME-SEGKIFLHAYL 142 G+ V + E +E ++ +L Sbjct: 350 GVDVVELPELAEAATAMNRHL 370 >gi|331239010|ref|XP_003332159.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311149|gb|EFP87740.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 275 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 59/210 (28%), Positives = 91/210 (43%), Gaps = 54/210 (25%) Query: 162 NMIGMAGCGSVP---------ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 +++ GC P + G I+ LRA+ D I+VGIGTVL DDP+L R Sbjct: 43 DLLACPGCNQRPFVTLTYAQSLDGKIAGADGQHLRARHDGIMVGIGTVLNDDPQLNVRNI 102 Query: 213 GLQ---EHSPMRIILDPHFKLSLDSKIIKT---------------------------ALL 242 L P I+LD + D K+IK A Sbjct: 103 SLTVPLAKQPQPIVLDTALRTPADCKLIKNYKNQTGKQPWLICARSAMSLQRRQELEAAG 162 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A VI +T + A ++ K + DL+K+L + G+ L++EGGAA+ S Sbjct: 163 ARVIPITNGMN---AWTYKAK-------EGLDLEKVLEVCKLNGINRLMIEGGAAIISSI 212 Query: 303 IN----SRLVDSIILYRSQIVIGEG-GIPS 327 +N + +++ +I+ S ++GEG GI S Sbjct: 213 LNQVSDNPILNILIVTVSPYMVGEGIGIKS 242 >gi|210135672|ref|YP_002302111.1| riboflavin biosynthesis protein [Helicobacter pylori P12] gi|210133640|gb|ACJ08631.1| riboflavin biosynthesis protein [Helicobacter pylori P12] Length = 344 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 114/264 (43%), Gaps = 45/264 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65 L NPSVAC+++ K+ ++ PHAEV A + A + Sbjct: 21 LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKNDLEKLEDPK 80 Query: 66 ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + R A+ +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 81 ILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 ++ ++ +E++ K L + R +E++ L K+A+ M G G Sbjct: 141 LARLQKARIETMICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230 ITG S H RA D +++ T+ D+P L R + +P IL H + Sbjct: 195 -ITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYHNKNPNIAILSKH-SI 252 Query: 231 SLDSKIIKTALLAPVIIVTENDDP 254 + +SK+ AP +V ++P Sbjct: 253 NPNSKVFS----APNRLVNIFNNP 272 >gi|298735524|ref|YP_003728045.1| riboflavin biosynthesis protein RibG [Helicobacter pylori B8] gi|298354709|emb|CBI65581.1| Riboflavin biosynthesis protein (RibG) [Helicobacter pylori B8] Length = 344 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 77/335 (22%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68 L NPSVAC+++ K ++ PHAEV A + E E+ + Sbjct: 21 LALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKNDLEKLEDPK 80 Query: 69 GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + + +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 81 TLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 ++ I+ +E++ K L + R +E++ L K+A+ M G G Sbjct: 141 LARLQKARIETIICHNLENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230 ITG S H RA + +++ T+ D+P L R + Q +P IL K Sbjct: 195 -ITGQKSVIFTHNQRAICNTLIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILS---KR 250 Query: 231 SLD--SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 S+D SK+ AP +V DP +DL + +G Sbjct: 251 SIDPNSKVFS----APNRLVNTFHDP------------------KDLP------LEKGFN 282 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +EGG + S N +D+++L+ +IGE Sbjct: 283 --FIEGGWELFESLRNK--IDALLLHSHASMIGEA 313 >gi|317013277|gb|ADU83885.1| riboflavin biosynthesis protein [Helicobacter pylori Lithuania75] Length = 344 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 38/219 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68 L NPSVAC+++ K ++ PHAEV A + E E+ + Sbjct: 21 LALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPHLKNDLEKLEDPK 80 Query: 69 GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + + +TLEPC+ YG++P C++ + +RVV+ ++ + + G Sbjct: 81 TLSDFLKKHHNNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 ++ ++ R +E++ K L + R +E++ L K+A+ M G G Sbjct: 141 LARLQKARIETMICRNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYYHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ITG S H RA D +++ T+ D+P L R Sbjct: 195 -ITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDSRF 232 >gi|290959312|ref|YP_003490494.1| reductase [Streptomyces scabiei 87.22] gi|260648838|emb|CBG71952.1| putative reductase [Streptomyces scabiei 87.22] Length = 385 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 6/86 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86 A ++ +DG + RG + GG P HAE AL + A AT Y +LEPC+ P Sbjct: 264 AVVVAEDGTELARGHSREGGDPVVHAEEAALAKIDPADPRLASATVYSSLEPCARRASRP 323 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRV 111 PCA+ +++ GIRRVV +PD V Sbjct: 324 APCARLVLDAGIRRVVTAWREPDTFV 349 >gi|296446869|ref|ZP_06888806.1| bifunctional deaminase-reductase domain protein [Methylosinus trichosporium OB3b] gi|296255640|gb|EFH02730.1| bifunctional deaminase-reductase domain protein [Methylosinus trichosporium OB3b] Length = 252 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 42/187 (22%), Positives = 89/187 (47%), Gaps = 7/187 (3%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + A + +R + ++ S D I S I+G + + +H +RA DA++VG Sbjct: 19 IFAPFSETPSERPFVVGQVGQSLDGRIATLCGESRDISGQAALDHLHRIRAHVDAVIVGA 78 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 T++ DDP+L+ R + +P R+++DP +L + + +++ E + Sbjct: 79 RTIVLDDPQLSVRR--VPGTNPARVVIDPSGRLDSRGRWLADDGARRILVTGERS----S 132 Query: 258 LAFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 ++ + I + + ++ L RG+ +LVEGGA +F+ + +D + + + Sbjct: 133 VSCGAETIRLESHAGIIPPAAIVEALFSRGLKRILVEGGARTLSTFLETGHLDRLHVLVA 192 Query: 317 QIVIGEG 323 ++IG G Sbjct: 193 PMIIGSG 199 >gi|317181190|dbj|BAJ58976.1| riboflavin biosynthesis protein [Helicobacter pylori F32] Length = 344 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 59/225 (26%), Positives = 98/225 (43%), Gaps = 41/225 (18%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ PHAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLKNDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENE 135 Query: 109 VRVSGRG-LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGM 166 + G LQ G++ + +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKGGLARLQKARIDGVVCES-LENKAKDLLLPF--RIMEQKGRFNLFKLALR---MNGD 189 Query: 167 AGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 G ITG S H RA D ++V T+ D+P L R Sbjct: 190 YCHGK--ITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARF 232 >gi|291513963|emb|CBK63173.1| Pyrimidine reductase, riboflavin biosynthesis [Alistipes shahii WAL 8301] Length = 359 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 55/111 (49%), Gaps = 9/111 (8%) Query: 43 GRGVTAY----GGCPHAEVQALE---EAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIE 94 GR T Y HAE +A+ +AG E RGA Y ++EPCS P C Q I+ Sbjct: 249 GRSFTGYTHETSPTHHAEQEAIRKALDAGAELRGAAIYSSMEPCSQRKSEPESCTQLILR 308 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME-SEGKIFLHAYLTR 144 G RVV + +PD V RG Q L + G+ V E +EG +A+L R Sbjct: 309 HGFARVVFALYEPDRFVRCRGAQTLREAGVDVRVYPELAEGVRRANAHLGR 359 >gi|315453509|ref|YP_004073779.1| Riboflavin biosynthesis protein [Helicobacter felis ATCC 49179] gi|315132561|emb|CBY83189.1| Riboflavin biosynthesis protein, priboflavin-specific deaminase [Helicobacter felis ATCC 49179] Length = 343 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/224 (26%), Positives = 89/224 (39%), Gaps = 41/224 (18%) Query: 20 WHV-GLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA-------------- 63 W V L NPSVAC+++ ++ PHAEV+AL EA Sbjct: 14 WEVQTLALPNPSVACMVLDQNYRLLSLQTHTKAHTPHAEVRALAEAFNALSAVPFPKDID 73 Query: 64 ---------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 + + T VTLEPC+H+G++PPCA + +RV+V + Sbjct: 74 PLDKQANYNFLAQNHSDLFKECTLLVTLEPCNHFGKTPPCAALLCALKPKRVIVGALEQH 133 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMA 167 G GL+ L + GI V + L+ + + + KR L KIA D Sbjct: 134 PPAQG-GLKRLQEAGIEVIVLDLPACYDLLYPF--KCLSKRGVFNLFKIATRLD------ 184 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 G I+G S N H R + +++ + D P L R Sbjct: 185 GNYQGKISGTKSLNFTHNQRGVAQTLIISGQSARTDRPLLDHRF 228 >gi|284173977|ref|ZP_06387946.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus solfataricus 98/2] Length = 211 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K + H +R++ DA++VG TV D+P LT + G +P+R+++ F L KI T Sbjct: 32 KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTT 90 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +I T N + F +K + I+ L + V L+VEGG + Sbjct: 91 P--PSTVIYTSNYESEKVEEFIRKGV-IVRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLI 147 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 FI L D I + S + G G Sbjct: 148 WWFIKDNLYDEIRITISPRIFGNG 171 >gi|294630170|ref|ZP_06708730.1| riboflavin/cytosine deaminase [Streptomyces sp. e14] gi|292833503|gb|EFF91852.1| riboflavin/cytosine deaminase [Streptomyces sp. e14] Length = 422 Score = 56.6 bits (135), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 6/86 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP 86 A ++ DG + RG + G P HAE AL + A GAT Y +LEPC+ P Sbjct: 299 AVVVAADGTELARGHSREAGDPVAHAEEAALAKIDPADPRLPGATVYSSLEPCARRASRP 358 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRV 111 PCA+ I++ G+RRVV +PD V Sbjct: 359 RPCARLILDAGVRRVVTAWREPDTFV 384 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/57 (38%), Positives = 33/57 (57%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPRL 61 >gi|15898882|ref|NP_343487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus solfataricus P2] gi|2493564|sp|P95872|RIB7_SULSO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1707704|emb|CAA69508.1| riboflavin biosynthesis protein ribG [Sulfolobus solfataricus P2] gi|13815385|gb|AAK42277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (ribD) [Sulfolobus solfataricus P2] gi|261603290|gb|ACX92893.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus solfataricus 98/2] Length = 213 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K + H +R++ DA++VG TV D+P LT + G +P+R+++ F L KI T Sbjct: 34 KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKY-GKNRRNPIRVVVTRSFNLDPSYKIFTT 92 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +I T N + F +K + I+ L + V L+VEGG + Sbjct: 93 P--PSTVIYTSNYESEKVEEFIRKGV-IVRKFLHLDDLLEDLYDNFNVRRLMVEGGGHLI 149 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 FI L D I + S + G G Sbjct: 150 WWFIKDNLYDEIRITISPRIFGNG 173 >gi|225023945|ref|ZP_03713137.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC 23834] gi|224942970|gb|EEG24179.1| hypothetical protein EIKCOROL_00812 [Eikenella corrodens ATCC 23834] Length = 254 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 60/133 (45%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P +M AL+ + L + V ++V+ G +IGRG VT + C HAE Sbjct: 101 FPPPEESEHWMQQALQLA--EQALAAGEVPVGAVVVRRGEIIGRGANACVTEHSVCRHAE 158 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL EAG G YVTLEPCS CA I++ IRR++ +P Sbjct: 159 IAALTEAGRRLGNYRLDGCDLYVTLEPCSM------CAGAIMQSRIRRLIYAAAEPKTGA 212 Query: 112 SGRGLQWLSQKGI 124 +G L + K + Sbjct: 213 AGSMLDLFANKQL 225 >gi|307638162|gb|ADN80612.1| Diamino hydroxy phosphoribosyl amino pyrimidine deaminase/5-amino-6-5-phosphoribosyl amino uracilreductase [Helicobacter pylori 908] gi|325996761|gb|ADZ52166.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylamino uracil reductase [Helicobacter pylori 2018] gi|325998356|gb|ADZ50564.1| putative riboflavin specific deaminase [Helicobacter pylori 2017] Length = 344 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/264 (25%), Positives = 110/264 (41%), Gaps = 45/264 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65 L NPSVAC+++ K+ ++ PHAEV A + A + Sbjct: 21 LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLKSDLEKLEDPK 80 Query: 66 ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + R A+ +TLEPC+ YG++P C+ + +RVV+ ++ + + G Sbjct: 81 ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 + ++ +E++ K L + R +E+R L K+A+ M G G Sbjct: 141 LARLQKAHIETMICCNLENKAKDLLLPF--RIMEQRGRFNLFKLALR---MNGDYHHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKL 230 ITG S H RA D +++ T+ D+P L R N Q +P IL + Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKNPNIAILSKR-SI 252 Query: 231 SLDSKIIKTALLAPVIIVTENDDP 254 S SK+ AP +V DP Sbjct: 253 SPHSKVFS----APNRLVNTFHDP 272 >gi|291302010|ref|YP_003513288.1| bifunctional deaminase-reductase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571230|gb|ADD44195.1| bifunctional deaminase-reductase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 55.8 bits (133), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 84/195 (43%), Gaps = 15/195 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + L A+S D + A + ++ N+V LR DAILVG TV D+P L Sbjct: 4 RRPWVLLSAAMSLDGYLDDATATRLVLSNDEDLNRVRQLRGHYDAILVGAETVRRDNPSL 63 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK---- 263 ++G Q P ++ L L S+ T AP+++ P +A R++ Sbjct: 64 RA-VDGPQ---PRKVTLTATGDLDPASRFFTTG-AAPLVLCP----PPVAEELRRRLGER 114 Query: 264 -NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + + L ++L L GV L+VEGG +V F+ L D + L + +G+ Sbjct: 115 AEVQSLPAGA-GLAEILQTLWNLGVRRLMVEGGGSVHTQFLTQGLADELRLAVAPFFVGD 173 Query: 323 GGIPSPLEEGYLEKN 337 P E G + Sbjct: 174 AAAPRFTEPGKFPHD 188 >gi|256390088|ref|YP_003111652.1| bifunctional deaminase-reductase domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256356314|gb|ACU69811.1| bifunctional deaminase-reductase domain protein [Catenulispora acidiphila DSM 44928] Length = 230 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 52/204 (25%), Positives = 85/204 (41%), Gaps = 19/204 (9%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R H+ L A+S D + + ++ ++V LRA SDAI+VG T+ DDP L Sbjct: 3 ERPHVILSAAMSLDGHLDDTTPDRLMLSDDADFDRVDALRAASDAIMVGAETIRRDDPRL 62 Query: 208 TCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTA-----LLAPVIIVTENDD 253 R GL EH P+++ + L +++ T A + T+ D Sbjct: 63 VIRDPERRADRVRRGLAEH-PVKVTVTGAGALDPEARFFTTGGHKLVYCADAAVPTQAD- 120 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 LA + D +L L RG+ L+VEGG+++ F+ L D I L Sbjct: 121 ---RLATVPDTEVVAAGALVDFPGILADLKRRGIERLMVEGGSSLHTRFLAEDLADEIHL 177 Query: 314 YRSQIVIGEGGIPSPLEEGYLEKN 337 + +G+ P + +N Sbjct: 178 AIAPFFVGDDQAPRFVRAAEFPQN 201 >gi|159038150|ref|YP_001537403.1| deaminase-reductase domain-containing protein [Salinispora arenicola CNS-205] gi|157916985|gb|ABV98412.1| bifunctional deaminase-reductase domain protein [Salinispora arenicola CNS-205] Length = 230 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 55/213 (25%), Positives = 88/213 (41%), Gaps = 44/213 (20%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L AVS D I A + ++ ++V +RA DAILVG T+ DDP Sbjct: 1 MSDRPYVLLSCAVSVDGYIDDATEDRLLLSNAADVDRVDEVRAGCDAILVGAATIRKDDP 60 Query: 206 ELTCRLNGLQEH--------SPMRII------LDP---HFKLSLDSKIIKTALLA----- 243 L R ++ +P++ LDP F +K++ TA A Sbjct: 61 RLLVRSQARRDTRIHRGRPATPLKATITGRGDLDPTAQFFTAGDSTKVVYTATSALDKTC 120 Query: 244 ----PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V V + +PV DL ++L L RGV L+VEGG ++ Sbjct: 121 ETVGTVADVVDAGEPV------------------DLDRVLADLASRGVARLMVEGGGSMH 162 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 F+ + L D + L + +G+ P + +G Sbjct: 163 TMFLTAGLADELHLVVAPFFVGDSRAPRFVYDG 195 >gi|325068552|ref|ZP_08127225.1| riboflavin biosynthesis protein RibD [Actinomyces oris K20] Length = 181 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 22/136 (16%) Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H LR Q DAI+VG GT LADDP LT R Q P L P ++ + S+ + Sbjct: 3 ARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQ---PAPAHLQP-LRVVVGSRSL- 57 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 P DD L L D + +L +L R + +L+EGG + Sbjct: 58 -----PATSRVLADDHYLLLP------------DHDPRAVLAVLAEREIRHVLLEGGPTL 100 Query: 299 AHSFINSRLVDSIILY 314 A +F+ + LVD ++ Y Sbjct: 101 ATAFLRAGLVDQVVAY 116 >gi|289627113|ref|ZP_06460067.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869937|gb|EGH04646.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 271 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 56/195 (28%), Positives = 85/195 (43%), Gaps = 26/195 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63 +F + M+AA+ + ++ P V +IVK+G VI G HAE A+E+ Sbjct: 5 AFGGQAMNAAIE----QLKKCTSYPKVGAVIVKNGEVISTGYRGEVSGKHAERVAIEKLP 60 Query: 64 GEEARGATAYVTLEPC-SHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G+T Y TLEPC +G P CA + + + VV+ V DP+ R+ +G + L Sbjct: 61 NPDLTGSTIYTTLEPCVEMHGLQPHKSCAGLLKDLNVEHVVIGVLDPNGRIYCQGYEELI 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS--VPITGFI 178 + G+ V F L QVE T K D IG G V + G Sbjct: 121 KAGVKV---------TFFTPELRNQVESS---TFKF----DCNIGYGPTGKRRVAVVGSG 164 Query: 179 SKNQVHLLRAQSDAI 193 K ++H D++ Sbjct: 165 KKFKIHASEKSLDSV 179 >gi|15612463|ref|NP_224116.1| putative riboflavin-specific deaminase [Helicobacter pylori J99] gi|4156003|gb|AAD06964.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99] Length = 344 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 42/221 (19%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE----------------- 65 L NPSVAC+++ K+ ++ PHAEV A + A + Sbjct: 21 LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKSDLEKLEDPK 80 Query: 66 ------EARGATAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + R A+ +TLEPC+ YG++P C+ + +RV++ ++ + + Sbjct: 81 ILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVIIATEENEAKKG- 139 Query: 114 RGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCG 170 GL+ L + I I+ +E++ K L + R +E++ L K+A+ M G G Sbjct: 140 -GLERLQKAHIETIICHNLENKAKNLLLPF--RVMEQKGRFNLFKLALR---MNGDYHHG 193 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ITG S H RA D +++ T+ D+P L R Sbjct: 194 K--ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARF 232 >gi|227826855|ref|YP_002828634.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.14.25] gi|227829432|ref|YP_002831211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus L.S.2.15] gi|229578215|ref|YP_002836613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus Y.G.57.14] gi|229583070|ref|YP_002841469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus Y.N.15.51] gi|229584037|ref|YP_002842538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.16.27] gi|284996814|ref|YP_003418581.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.D.8.5] gi|227455879|gb|ACP34566.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.S.2.15] gi|227458650|gb|ACP37336.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus M.14.25] gi|228008929|gb|ACP44691.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus Y.G.57.14] gi|228013786|gb|ACP49547.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus Y.N.15.51] gi|228019086|gb|ACP54493.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus M.16.27] gi|284444709|gb|ADB86211.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.D.8.5] gi|323473972|gb|ADX84578.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus REY15A] gi|323476967|gb|ADX82205.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus HVE10/4] Length = 211 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K + H +R++ DA++VG TV D+P LT + + +P+R+++ F L KI T Sbjct: 32 KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKYSK-NRRNPIRVVVTRSFNLDPSYKIFTT 90 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ T N + F +K + I+ L + V L+VEGG + Sbjct: 91 P--PSTIVYTSNYESEKVEEFNRKGV-IVRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLI 147 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 FI L D I + S + G G Sbjct: 148 WWFIRDNLYDEIRITISPRIFGNG 171 >gi|323694203|ref|ZP_08108379.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum WAL-14673] gi|323501676|gb|EGB17562.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum WAL-14673] Length = 155 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D ++M AA+R ++ L + C+IV +G +IGRG + HAE+ A+++ Sbjct: 4 DEKYMRAAIREAKKAYALGEV--PIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ G T Y+TLEPC P CA I++ I +V++ +P +G + Sbjct: 62 ACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSVMN 115 Query: 118 WLSQKGI 124 L +KG Sbjct: 116 LLDEKGF 122 >gi|238618991|ref|YP_002913816.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.16.4] gi|238380060|gb|ACR41148.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus M.16.4] Length = 211 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 4/144 (2%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K + H +R++ DA++VG TV D+P LT + + +P+R+++ F L KI T Sbjct: 32 KQRQHEIRSEVDAVMVGANTVRVDNPSLTVKYSK-NRRNPIRVVVTRSFNLDPSYKIFTT 90 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ T N + F +K + I+ L + V L+VEGG + Sbjct: 91 P--PSTIVYTSNYESEKVEEFSRKGV-IVRKFLHLDDLLEDLYNSFNVKRLMVEGGGHLI 147 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 FI L D I + S + G G Sbjct: 148 WWFIRDNLYDEIRITISPRIFGNG 171 >gi|323487362|ref|ZP_08092661.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163] gi|323399323|gb|EGA91722.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163] Length = 184 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D ++M AA+R ++ L + C+IV +G +IGRG + HAE+ A+++ Sbjct: 33 DEKYMRAAIREAKKAYALGEV--PIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAIKK 90 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ G T Y+TLEPC P CA I++ I +V++ +P +G + Sbjct: 91 ACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSVMN 144 Query: 118 WLSQKGI 124 L +KG Sbjct: 145 LLDEKGF 151 >gi|302868074|ref|YP_003836711.1| bifunctional deaminase-reductase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302570933|gb|ADL47135.1| bifunctional deaminase-reductase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 229 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 54/201 (26%), Positives = 89/201 (44%), Gaps = 22/201 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP L Sbjct: 4 RPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDPRLL 63 Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 R GL SP+++ LDP + +K + P +V + + Sbjct: 64 VRSERRRAERVARGLPP-SPVKVTVTGSGDLDPQARFFTAGDGLKL-VYCPSGVVDKARE 121 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 V A+ + + D + ++ L GRGV L+VEGG +V F+ + L D + L Sbjct: 122 QVGAV-----STVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHL 176 Query: 314 YRSQIVIGEGGIPSPLEEGYL 334 + +G+G P + +G+ Sbjct: 177 VVAPFFVGDGRAPRFVGDGHF 197 >gi|257075687|ref|ZP_05570048.1| hypothetical protein Faci_01419 [Ferroplasma acidarmanus fer1] Length = 189 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 +I + +A+S + I A G I+ I +V +R D +L+G +V D+P L Sbjct: 4 YIIINVAMSLNGKIS-AINGRYRISNDIDMTRVMDIRKNVDGVLLGANSVKVDNPVLN-- 60 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 ++ RIILD F+L+ + + + I ++N+ + KN II Sbjct: 61 ------YAKNRIILDEKFRLNDNYHVFDGK--SKSYIFSKNNKKI-------KNAEIIIL 105 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 D + +L L G+ S+LVEGG+ V + FI+ ++ D ++ Sbjct: 106 DDLSITSILKKLYDMGIKSILVEGGSNVINQFIDEKIFDEFYIF 149 >gi|225376320|ref|ZP_03753541.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM 16841] gi|225211696|gb|EEG94050.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM 16841] Length = 166 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 60/123 (48%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M AA+R ++ L + C+IV+DG +I RG T HAE+ A+++ Sbjct: 6 DEKYMKAAIREAKKAYALDEV--PIGCVIVQDGTIIARGYNRRNTEGNTLAHAELTAIKK 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC CA I++ +++VV+ +P +G L Sbjct: 64 ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIATMNPKAGCAGSVLN 117 Query: 118 WLS 120 L Sbjct: 118 LLQ 120 >gi|207092337|ref|ZP_03240124.1| riboflavin biosynthesis protein [Helicobacter pylori HPKX_438_AG0C1] Length = 344 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 43/226 (19%) Query: 20 W-HVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EA 63 W H L NPSVAC+++ K+ ++ HAEV A + E Sbjct: 16 WEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLKSDLEK 75 Query: 64 GEEARGATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 E+ + + + +TLEPC+ YG++P C+ + +RVV+ ++ + Sbjct: 76 LEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENE 135 Query: 109 VRVSGRGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIG 165 + GL+ L + I I+ R +E++ K L + R +E++ L K+A+ M G Sbjct: 136 AKKG--GLERLQKAHIETIICRNLENKAKNLLLPF--RIMEQKGRFNLFKLALR---MNG 188 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 G ITG S H RA D +++ T+ D+P L R Sbjct: 189 DYYHGK--ITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRF 232 >gi|157374292|ref|YP_001472892.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis HAW-EB3] gi|157316666|gb|ABV35764.1| putative riboflavin biosynthesis protein RibD [Shewanella sediminis HAW-EB3] Length = 74 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/56 (44%), Positives = 35/56 (62%) Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 TAYVTLE S GR+P CA +++ GI+ V + D D R G+G+Q L +G+ V Sbjct: 15 TAYVTLENGSFVGRTPACAITLVKLGIKNAVASIQDRDPRNIGKGIQILESRGVTV 70 >gi|88602100|ref|YP_502278.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] gi|88187562|gb|ABD40559.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] Length = 226 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/188 (27%), Positives = 89/188 (47%), Gaps = 12/188 (6%) Query: 148 KRSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLAD 203 R ++TL V+ D + + G S + F+S +H +RA SDAI+VG T+ D Sbjct: 6 NRPYVTLVSEVTIDGKLTVTRGASSKLLMQFMSHEAEVLLHQIRADSDAIMVGANTIRID 65 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAF 260 + LT R ++ +P+R+I +S D+ ++ AP II + + LA Sbjct: 66 NSFLTVR--HVEGKNPIRVIPSSKADISPDANVLSPD--APTIIAVSARADKETCTILAE 121 Query: 261 RKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + I I + DL L+ +L + V SL++EGG+ + + L+D ++L + Sbjct: 122 KGAYIEICGDEFVDLPILMRLLFEKYSVQSLMIEGGSTLNGNMFQKGLIDELLLIHLPFI 181 Query: 320 IGEGGIPS 327 G PS Sbjct: 182 AGGEDTPS 189 >gi|282164321|ref|YP_003356706.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine reductase [Methanocella paludicola SANAE] gi|282156635|dbj|BAI61723.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine reductase [Methanocella paludicola SANAE] Length = 227 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 92/186 (49%), Gaps = 11/186 (5%) Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFI---SKNQVHLLRAQSDAILVGIGTVLADD 204 R ++TL ++ D + + G S I G + S+ +H R + DAI+VG T+ D+ Sbjct: 5 RPYVTLISEMTVDGKLTLKRGLSSKIIMGLMDMESQRFLHKKRTEFDAIMVGSNTIKIDN 64 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VIIVTENDDPVLALAFRKK 263 LT RL ++ SP+R++ + S ++ AP +I+V+ P A R+K Sbjct: 65 SILTNRL--VEGRSPVRVVPCSDASIPPGSNVLNHD--APTIIVVSGRASPEKVEAIRQK 120 Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ C + DL+ ++ L RG+ L+VEGG + I ++D IIL + +IG Sbjct: 121 GAEVMVCGKEAVDLELMMEGLTKRGIKRLMVEGGPTLIWLLIQKHMIDHIILIQIPYIIG 180 Query: 322 EGGIPS 327 PS Sbjct: 181 GDSTPS 186 >gi|109946711|ref|YP_663939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter acinonychis str. Sheeba] gi|109713932|emb|CAJ98940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter acinonychis str. Sheeba] Length = 344 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 44/239 (18%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA------------ 70 L NPSVAC+++ K+ ++ V PHAEV A + A + R + Sbjct: 21 LALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLATKSALKILRPSLKIDLDQLEDPK 80 Query: 71 -----------TAY------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +TLEPC+ YG++P C++ + +RVV+ +++ + Sbjct: 81 ILSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAIEENKAKKG- 139 Query: 114 RGLQWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCG 170 GL+ L + + ++ +E++ + L + R +EK+ L K+A+ M G G Sbjct: 140 -GLERLKKAHVEALICPSLENKARDLLLPF--RIMEKKGRFNLFKLAL---RMNGDYQHG 193 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-NGL-QEHSPMRIILDPH 227 ITG S H RA ++V T+ D+P L R +G Q +P IL H Sbjct: 194 K--ITGQKSAIFTHNQRAVCGTLIVSGKTIRTDNPLLDARFCDGFYQGKNPNIAILSKH 250 >gi|37679027|ref|NP_933636.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016] gi|37197769|dbj|BAC93607.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016] Length = 181 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 77/176 (43%), Gaps = 22/176 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P S D FM A+ + + + V ++VKDG VI G + + HAE Sbjct: 6 QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 +Q L +AG+ T YVTLEPC P CA ++ ++R+V D Sbjct: 64 IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117 Query: 112 SGRGLQWLSQKG----IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 +G L S + +D+ ++ESE + L A+ R+ ++ + ++ D+ Sbjct: 118 AGTVLDLFSSQAAYHYATIDKGLLESECREQLQAFFKRRRKEIKALKKELQTQSDH 173 >gi|163802511|ref|ZP_02196404.1| molecular chaperone DnaK [Vibrio sp. AND4] gi|159173812|gb|EDP58627.1| molecular chaperone DnaK [Vibrio sp. AND4] Length = 178 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 71/173 (41%), Gaps = 29/173 (16%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D RFM A+ + V ++VKDG +I G + ++ HAE+Q Sbjct: 7 SPQDERFMRRAMELAEQ--AEAEGEVPVGAVLVKDGKIIAEGWNRSICSHDATAHAEIQT 64 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 L +AGE T YVTLEPC P CA ++ ++RVV PD++ Sbjct: 65 LRKAGETLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGA--PDLKAGAA 116 Query: 115 GL-------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 G Q + ++E+E + L A+ R +R I K Q Sbjct: 117 GTVLNLFESQAAYHYATVESGLLENECRTQLQAFFKR---RRKEIKAKRQAQQ 166 >gi|269126070|ref|YP_003299440.1| bifunctional deaminase-reductase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311028|gb|ACY97402.1| bifunctional deaminase-reductase domain protein [Thermomonospora curvata DSM 43183] Length = 228 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 8/200 (4%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D I A + ++ ++V +RA DAILVG T+ DDP Sbjct: 1 MSDRPYVLLSCAMSVDGYIDDARPERLRLSSPADFDRVDGVRATCDAILVGAETIRRDDP 60 Query: 206 ELTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 +L + QE R + L L S+ T ++ P LA Sbjct: 61 KLLIKSPVRQERRAARGLPRQLTKVTLTLRGDLDPTSRFFTTGDCPKLVYAGSRAVPALA 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 I D D++ +L L RGV L+VEGG + F+ L D + L + Sbjct: 121 ERLEGVAEVIDGGDPVDVRLVLADLARRGVRRLMVEGGGGMHTLFLTEGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYLEKN 337 IG+ P + G ++ Sbjct: 181 FFIGDPSAPRFVHPGLFPQD 200 >gi|291302009|ref|YP_003513287.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571229|gb|ADD44194.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 419 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 2/94 (2%) Query: 30 SVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP-P 87 SV +IV DG V+ G + HAE AL + ++ GAT Y +LEPC P Sbjct: 25 SVGAVIVADGRVLATGYSRETDPHDHAEEAALSKLDQDLSGATVYSSLEPCGQRASRPVS 84 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA+ II + RVV +PD V +GL+ L++ Sbjct: 85 CAELIIAARVPRVVYAWREPDTFVQPKGLRLLAE 118 >gi|208435372|ref|YP_002267038.1| riboflavin biosynthesis protein [Helicobacter pylori G27] gi|208433301|gb|ACI28172.1| riboflavin biosynthesis protein [Helicobacter pylori G27] Length = 344 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 38/219 (17%) Query: 24 LTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE--------------EAGEEAR 68 L NPSVAC+++ K+ ++ PHAEV A + E E+ + Sbjct: 21 LALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLKSDLEKLEDPK 80 Query: 69 GATAY---------------VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + + +TLEPC+ YG++P C+ + +RVV+ ++ + + G Sbjct: 81 TLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIAAEENEAKKGG 140 Query: 114 RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSV 172 ++ ++ +E++ K L + R +E++ L K+A+ M G G Sbjct: 141 LARLQKARIETMICHNLENKAKDLLLPF--RVMEQKGRFNLFKLALR---MNGDYYHGK- 194 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ITG S H RA D +++ T+ D+P L R Sbjct: 195 -ITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRF 232 >gi|87310393|ref|ZP_01092523.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM 3645] gi|87286892|gb|EAQ78796.1| hypothetical protein DSM3645_29881 [Blastopirellula marina DSM 3645] Length = 481 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/129 (33%), Positives = 65/129 (50%), Gaps = 19/129 (14%) Query: 26 STNPSVACLIVK-DGIV--IGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCS 80 S +P V ++V+ DG + RG G HAE LE A E G + TLEPC Sbjct: 21 SPSPQVGAVLVRPDGSIETAARGELRDGN--HAEFTLLERKCAAENLEGCVLFATLEPC- 77 Query: 81 HYGRSPP---CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---DRMMES-- 132 R+ P CA+ I+ IR V V ++D + +V+G+G+++L + G+ V DR ++ Sbjct: 78 -LNRNSPKRGCARHIVGARIREVYVGIEDDNPKVAGKGIEYLRRSGVTVHLFDRELQEVI 136 Query: 133 --EGKIFLH 139 E K F Sbjct: 137 LDENKSFFE 145 >gi|330833888|ref|YP_004408616.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera cuprina Ar-4] gi|329566027|gb|AEB94132.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera cuprina Ar-4] Length = 207 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 8/141 (5%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H+LR++ DAI++G T D+P LT L ++ +P+R+I+ + L + +I L Sbjct: 36 HVLRSEVDAIMIGANTARIDNPSLT--LKYVKGTNPIRVIVTGNGHLDQNLRIFSVPPLT 93 Query: 244 PVIIVTENDDPVLA-LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 II T+N++P L L + I C L+ L V ++VEGG + S Sbjct: 94 --IIYTKNENPQLENLTKNQVKIRKFLNICNILEDLYENF---SVKKVMVEGGGKLNWSL 148 Query: 303 INSRLVDSIILYRSQIVIGEG 323 I VD I L S + G G Sbjct: 149 IKENCVDEIRLTISPRIFGSG 169 >gi|330445259|ref|ZP_08308911.1| tRNA-specific adenosine deaminase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489450|dbj|GAA03408.1| tRNA-specific adenosine deaminase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 163 Score = 53.5 bits (127), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 69/147 (46%), Gaps = 21/147 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V +G VIG G + + HAE+ AL +AG E R T YVTLEPC Sbjct: 19 VGAVVVHNGQVIGEGWNRSIGQHDATAHAEIMALRQAGKVLENYRLLDTTVYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ + +VV DD +G + LS G+ +V ++ E + Sbjct: 77 ----PMCAGAMVHSRVGKVVYGADDLKTGAAGSTMNLLSYDGVNHHVGLVSGVLADECRA 132 Query: 137 FLHAYLT-RQVEKRSHITLKIAVSQDN 162 L A+ R+ EK++ L +++N Sbjct: 133 QLQAFFKRRRAEKKAAKQLAKQQAENN 159 >gi|320157222|ref|YP_004189601.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O] gi|319932534|gb|ADV87398.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O] Length = 181 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 22/159 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P S D FM A+ + + + V ++VKDG VI G + + HAE Sbjct: 6 QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 +Q L +AG+ T YVTLEPC P CA ++ ++R+V D Sbjct: 64 IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117 Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQ 145 +G L S + I ++ESE + L A+ R+ Sbjct: 118 AGTVLDLFSSQAAYHYATIEKGLLESECRDQLQAFFKRR 156 >gi|197302614|ref|ZP_03167668.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC 29176] gi|197298196|gb|EDY32742.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC 29176] Length = 180 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 78/168 (46%), Gaps = 23/168 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M AL+ ++ L T + C+IV +G +I RG T HAE+ A+++ Sbjct: 22 DEKYMKEALKQAKKAYALEET--PIGCVIVHEGKIIARGYNRRNTDKSPLAHAEISAIKK 79 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL- 116 A ++ T YVTLEPC CA II+ I RVVV +P +G L Sbjct: 80 ASKKLGDWRLEECTLYVTLEPCQM------CAGAIIQSRIPRVVVGCMNPKAGCAGSVLN 133 Query: 117 ----QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 Q + + + +++E E + + + R++ + + K +S+ Sbjct: 134 LLDVQAFNHQAEVKTKVLEEECSLMMKQFF-RELRAKQKMKKKSLLSE 180 >gi|315505529|ref|YP_004084416.1| bifunctional deaminase-reductase domain protein [Micromonospora sp. L5] gi|315412148|gb|ADU10265.1| bifunctional deaminase-reductase domain protein [Micromonospora sp. L5] Length = 229 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 88/201 (43%), Gaps = 22/201 (10%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP L Sbjct: 4 RPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDPRLL 63 Query: 209 CR---------LNGLQEHSPMRII------LDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 R GL SP+++ LDP + +K + P +V + + Sbjct: 64 VRSERRRAERVARGLPP-SPVKVTVTGSGDLDPQARFFTAGDGLKL-VYCPSGVVDKARE 121 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 V + + + D + ++ L GRGV L+VEGG +V F+ + L D + L Sbjct: 122 QVGGV-----STVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHL 176 Query: 314 YRSQIVIGEGGIPSPLEEGYL 334 + +G+G P + +G+ Sbjct: 177 VVAPFFVGDGRAPRFVGDGHF 197 >gi|224154958|ref|XP_002337544.1| predicted protein [Populus trichocarpa] gi|222839542|gb|EEE77879.1| predicted protein [Populus trichocarpa] Length = 436 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 7/176 (3%) Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +K A S D + S IT ++ H RA++ IL GIGTV+ DDP L R + Sbjct: 1 MKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGTVVEDDPRLNVR-DV 59 Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273 P ++D + L +++++ A +I T + D A + +I Sbjct: 60 ATPRQPRIAVVDSRLDMPLTARVLQAP--AGCLIYTSSRDASKTSALQDLGTTVIPMPNA 117 Query: 274 ----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 DL +L L RG L VE G + S + LVD ++LY + ++G GG+ Sbjct: 118 HGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPKLLGTGGM 173 >gi|315180919|gb|ADT87833.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218] Length = 189 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC---PHAEV 57 P S D +FM A+ + V ++VKDG +I G + G C HAE+ Sbjct: 7 PFSPEDEQFMRRAMALAEQ--AEAEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AGE T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118 Query: 113 GRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVE--KRSHITLKIAVSQDN 162 G L S + + ++E E + L A+ R+ + K K+ +QD+ Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQRRRKEIKARKEAEKLQAAQDD 175 >gi|302672151|ref|YP_003832111.1| CMP/dCMP deaminase zinc-binding domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396624|gb|ADL35529.1| CMP/dCMP deaminase zinc-binding domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 190 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +FM AA+ +R L + C+IV +G +IGRG T HAE+ A++ Sbjct: 27 DIKFMKAAITQARKAYVLGEV--PIGCVIVYEGKIIGRGYNRRNTDKTTLAHAEITAIKR 84 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ G YVTLEPC CA I++ I V++ ++P +G L Sbjct: 85 AGKVIGDWRLEGCKLYVTLEPCQM------CAGAIVQARIPEVIMAAENPKAGCAGSVLD 138 Query: 118 WLSQKGI 124 L+ G Sbjct: 139 ILNNPGF 145 >gi|45190643|ref|NP_984897.1| AER037Cp [Ashbya gossypii ATCC 10895] gi|54036278|sp|Q757H6|RIB7_ASHGO RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|44983622|gb|AAS52721.1| AER037Cp [Ashbya gossypii ATCC 10895] Length = 246 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 61/199 (30%), Positives = 85/199 (42%), Gaps = 16/199 (8%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +TL A S D I I+ +K H LR IL+G GT LADDP L CR Sbjct: 31 VTLTYAQSLDARIAKQKGERTVISHEETKTMTHYLRYHHSGILIGSGTALADDPGLNCRW 90 Query: 212 NG-------LQEHSPMRIILDPHFKLSL-DSKIIKTALL----APVIIVTENDDPVLALA 259 ++ SP IILD + SKI L AP I+VT + V L Sbjct: 91 TPAADGADCTEQSSPRPIILDVRGRWRYRGSKIEYLHNLGKGKAP-IVVTGGEPEVRELG 149 Query: 260 FRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQ 317 + + + +L L + S++VEGGA V + + +VDS+++ Sbjct: 150 VSYLQLGVDEGGRLNWGELFERLYSEHHLESVMVEGGAEVLNQLLLRPDIVDSLVITIGS 209 Query: 318 IVIGEGGIP-SPLEEGYLE 335 +G G+ SP EE LE Sbjct: 210 KFLGSLGVAVSPAEEVNLE 228 >gi|260771319|ref|ZP_05880245.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972] gi|260613635|gb|EEX38828.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972] Length = 189 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 75/177 (42%), Gaps = 24/177 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGC---PHAEV 57 P S D +FM A+ + V ++VKDG +I G + G C HAE+ Sbjct: 7 PFSPEDEQFMRRAMALAEQ--AEAEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AGE T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118 Query: 113 GRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVE--KRSHITLKIAVSQDN 162 G L S + + ++E E + L A+ R+ + K K+ +QD+ Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQRRRKEIKARKEAEKLRAAQDD 175 >gi|302559850|ref|ZP_07312192.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000] gi|302477468|gb|EFL40561.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000] Length = 363 Score = 52.8 bits (125), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 35/88 (39%), Positives = 48/88 (54%), Gaps = 6/88 (6%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP 86 A ++ DG + RG + GG P HAE AL +A + R ATA Y +LEPC+ P Sbjct: 256 AVVVAADGTELARGHSREGGDPVVHAEEAALAKADPTDPRLATATVYSSLEPCARRASRP 315 Query: 87 P-CAQFIIECGIRRVVVCVDDPDVRVSG 113 C + I++ G+RRVV +PD V G Sbjct: 316 ASCVRLILDAGVRRVVTAWREPDTFVEG 343 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL--- 207 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPRLLVN 64 Query: 208 -----TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 RL + P+++ + +L ++ T + E + L Sbjct: 65 SPERRAARLAEGRTEYPLKVTVSGSGELDPAARFWHTGGEKVLYTTDEGAERARVLGI-A 123 Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ + + D ++LL L RGV L+VEGG + I L D + L + + +G Sbjct: 124 ADVVPLGAEL-DWRRLLEHLHAARGVRRLMVEGGGLIHTQLITQGLADELQLAVAPLFVG 182 Query: 322 EGGIP 326 + P Sbjct: 183 DPEAP 187 >gi|120554594|ref|YP_958945.1| deaminase-reductase domain-containing protein [Marinobacter aquaeolei VT8] gi|120324443|gb|ABM18758.1| bifunctional deaminase-reductase domain protein [Marinobacter aquaeolei VT8] Length = 288 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 50/227 (22%), Positives = 97/227 (42%), Gaps = 18/227 (7%) Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 D P V+++G+ + ++ ++ + L L + V S + ++ S D I Sbjct: 32 DQPAVKINGKSWE------LVQPASEQARNLLSLFLPLCQPVTTNSRVIGQLGQSLDGRI 85 Query: 165 G-MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223 + GC I G +H +RA DA++VG GT D+P LT R +P+R++ Sbjct: 86 ATVTGCSRF-INGDDGITHLHRIRALCDAVVVGAGTASTDNPRLTVRRT--SGRNPVRVV 142 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-------DCRDLK 276 +D ++ + T AP + + D + + C + Sbjct: 143 IDRRQRVPASHHLF-TDGDAPTLHLIAGDYQPGPKTLDPTGVTTVPCLGSAENEAPASPE 201 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++L +L G+ + +EGG SF+ + L+D + + + ++IG G Sbjct: 202 RILQVLQDFGLRKIFIEGGGVTVSSFLKAGLLDRLHVMVAPMIIGSG 248 >gi|150024567|ref|YP_001295393.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86] gi|149771108|emb|CAL42575.1| dCMP deaminase [Flavobacterium psychrophilum JIP02/86] Length = 142 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 36/148 (24%) Query: 9 RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR ++ L+ N V +IV+D ++I G Y G P Sbjct: 8 KYDKAYLRLAKEWSKLSYCNRKQVGAIIVRDKMIISDG---YNGSPSGFENCCEEQDGTT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+TL PC C++ I + GI+RVV D Sbjct: 65 KWYILHAEANAILKVARSTQSCEGATLYITLSPC------KECSKLIHQSGIKRVVYLED 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133 D GL++L + G++V+++ E E Sbjct: 119 YKD----NSGLEFLEKAGVLVEQIEEIE 142 >gi|89073121|ref|ZP_01159660.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34] gi|89051074|gb|EAR56531.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34] Length = 175 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M V D FM A+ + V ++V +G V+G G + + HAE Sbjct: 4 MQVEQNDEHFMRRAIELAA--KAEEEGEVPVGAVVVYNGRVVGEGWNRSIGQHDATAHAE 61 Query: 57 VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +AG E R T YVTLEPC P CA ++ C + +VV DD Sbjct: 62 IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115 Query: 112 SGRGLQWLSQKGI 124 +G + LS G+ Sbjct: 116 AGSTMNLLSYDGV 128 >gi|32455577|ref|NP_862060.1| putative deaminase [Streptomyces lividans] gi|28883228|gb|AAO61161.1| putative deaminase [Streptomyces lividans] gi|89357155|gb|ABD72321.1| pQC542.17 [Streptomyces lividans] Length = 155 Score = 52.8 bits (125), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 66/123 (53%), Gaps = 9/123 (7%) Query: 32 ACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSP- 86 A ++ +DG + G + A G HAE AL + ++ GAT Y TLEPCS RSP Sbjct: 34 AVIVSEDGTELATGYSRATGPHEHAEEVALAQLPQDDPRLAGATIYSTLEPCSQR-RSPR 92 Query: 87 -PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143 PCAQ ++ GI RVV+ +P + V G + L Q G+ V + E +E ++++L Sbjct: 93 TPCAQRVLAAGIPRVVIAWREPSLFVDDCVGYEQLIQAGVTVVELPELAEAARAVNSHLG 152 Query: 144 RQV 146 R V Sbjct: 153 RLV 155 >gi|127512238|ref|YP_001093435.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4] gi|126637533|gb|ABO23176.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4] Length = 273 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M A+ R G P V +IV G + G G HAE A+EEA E+ Sbjct: 7 ALYMKQAVDQMRMSEG---KGPKVGAVIVTKGHQVIAGHKKNG--THAERAAIEEAQEKK 61 Query: 68 ---RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 RGAT Y TLEPC G + C+ I GI+ V + DP+ + G + L +G Sbjct: 62 IDLRGATLYSTLEPCVSVGSKKEACSDLISRVGIKTVYIGRYDPNPNIQRLGWKKLRDEG 121 Query: 124 I 124 I Sbjct: 122 I 122 >gi|256832227|ref|YP_003160954.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603] gi|256685758|gb|ACV08651.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603] Length = 283 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 4/104 (3%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSH 81 +S N V +I + V+ G + HAE AL +A G + +GAT Y T+EPC++ Sbjct: 23 SSDNARVGAVIARGETVLATGYKSEIDKLHAEQIALHKAEMQGVDVKGATLYTTMEPCAN 82 Query: 82 YGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 S PCA+ + E GI V + DP+ +V G + L +GI Sbjct: 83 SRTSRVPCAELVAEAGIVEVHIGEYDPNPQVYRLGWKHLRDRGI 126 >gi|219852683|ref|YP_002467115.1| bifunctional deaminase-reductase domain protein [Methanosphaerula palustris E1-9c] gi|219546942|gb|ACL17392.1| bifunctional deaminase-reductase domain protein [Methanosphaerula palustris E1-9c] Length = 234 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/218 (24%), Positives = 100/218 (45%), Gaps = 15/218 (6%) Query: 149 RSHITLKIAVSQDNMIGMA-GCGSVPITGFISKNQ---VHLLRAQSDAILVGIGTVLADD 204 R H+ L ++ D + + G S + +++ +H RA DAI+VG T+ D+ Sbjct: 7 RPHVLLMSEITADGKLTLKKGSSSKILMKYMAPETEVLLHQTRAACDAIMVGSNTIRIDN 66 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 LT R+ + SP+R+I + LD+ ++ V + T + +A A R K Sbjct: 67 SFLTVRI--VPGESPLRVIPSSQADIPLDANVLGPDARTLVAVATSAPEEKIA-AIRAKG 123 Query: 265 INIIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ D DL L+ +L V L++EGG + + +LVD I L ++G Sbjct: 124 AMVVVAGDDHVDLSTLMHLLWRDFHVRRLMIEGGPTLNWHMLIHQLVDEIRLIHLPFIVG 183 Query: 322 EGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEY 354 PS + +++ +R ++++ G+++ EY Sbjct: 184 GADTPSLVGGMHIDSEDQMIRLQLKNHYLCGTNLVTEY 221 >gi|20806575|ref|NP_621746.1| cytosine/adenosine deaminase [Thermoanaerobacter tengcongensis MB4] gi|20515016|gb|AAM23350.1| Cytosine/adenosine deaminases [Thermoanaerobacter tengcongensis MB4] Length = 148 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63 +FM AL+ ++ L V +IVKDG +I RG ++ HAE+ A+ EA Sbjct: 4 KFMEEALKEAKKSYELGEV--PVGAVIVKDGEIIARGHNQKESSKDATAHAEIIAIREAC 61 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + YVTLEPC P CA I+E I+RV + + P +G + L Sbjct: 62 RRLGSWRLEDCSLYVTLEPC------PMCAGAIVEARIKRVYIGTESPKEGAAGSVINIL 115 Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142 + K + + +ME E K L + Sbjct: 116 NNKELGTSTEVYFGIMEEEAKELLKKFF 143 >gi|120437804|ref|YP_863490.1| cytidine/deoxycytidylate deaminase family protein [Gramella forsetii KT0803] gi|117579954|emb|CAL68423.1| cytidine/deoxycytidylate deaminase family protein [Gramella forsetii KT0803] Length = 143 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 36/148 (24%) Query: 9 RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 +F A LR +R L+ N V LIVKD ++I G Y G P Sbjct: 8 KFDKAYLRIAREWSKLSHCNRKQVGALIVKDRMIISDG---YNGTPTGFENFCEDEEGYT 64 Query: 54 -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A L+ AG + + AT Y+T+ PC C++ I + GI R+V +D Sbjct: 65 KWYVLHAEANAILKVAGSTQSCKDATLYITMSPC------KECSKLIHQSGISRLVFQID 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMESE 133 D GL++L + G+ ++++ E E Sbjct: 119 YKD----NSGLEFLKKAGVELEQITELE 142 >gi|330808801|ref|YP_004353263.1| hypothetical protein PSEBR_a2016 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327376909|gb|AEA68259.1| conserved hypothetical protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 243 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 74/160 (46%), Gaps = 17/160 (10%) Query: 187 RAQSDAILVGIGTVLADD------PELTCRLNGLQEHS-------PMRIILDPHFKLSLD 233 R D ++G T+ A D P + GL++H+ P+ I++DP KL Sbjct: 44 RLGGDGFIIGRKTMEAFDGISSRPPFVGEHSGGLRDHNIAHEPGDPVAIVIDPSGKLHYQ 103 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSL 290 + I I+ D L A R + I+ ++ C +LK+ L +L R G+ +L Sbjct: 104 TNTIDGGHRIISILGDSVSDAYLQ-ALRNQGISYLFAGPHCENLKQALAMLGARFGLKTL 162 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 L+EGG + +F+ + L+D I L + G G+PS E Sbjct: 163 LLEGGGVINGTFLKAGLIDEISLLIYPGIDGLSGVPSIFE 202 >gi|332796444|ref|YP_004457944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Acidianus hospitalis W1] gi|332694179|gb|AEE93646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Acidianus hospitalis W1] Length = 216 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 72/155 (46%), Gaps = 4/155 (2%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H+LR++ DAI++G TV D+P LT + + +P+R+I+ ++ KI T Sbjct: 34 HILRSEVDAIMIGGNTVRIDNPSLTLKY--VHGKNPIRVIISNSLNFDINYKIFNTPPQT 91 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSF 302 + +++ ++K + I D ++ ++ L V +++EGG + S Sbjct: 92 IIYTSNNSENKDFENKIKEKGVIIRKLDNFNICNVMNDLESNFNVHKVMIEGGGKLIWSV 151 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 I D + + S V G G+ EG+L KN Sbjct: 152 IKENCFDELRVTISPRVFG-NGVSLANGEGFLGKN 185 >gi|328767668|gb|EGF77717.1| hypothetical protein BATDEDRAFT_5464 [Batrachochytrium dendrobatidis JAM81] Length = 185 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 82/187 (43%), Gaps = 21/187 (11%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ITL A + D I + G + I+ S H LRA DAILVG+ T++ D+P L+ R Sbjct: 3 ITLTYAQTFDGFIALPG-QQLAISSPQSMVLTHALRATHDAILVGVQTIICDNPSLSTRF 61 Query: 212 NGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-------DPVL 256 P +ILD H + L++K++ P I T D ++ Sbjct: 62 VDYGPPPDRITPPSQPRPVILDSHLRCPLNAKVLSR---NPFIFTTTTPSTHSNSWDALI 118 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL--VDSIILY 314 + IN D+ L L + S+++EGG+ V +++ + + S+I+ Sbjct: 119 QAGAQPITINSDSTHRVDIVSALEYLHSHNIHSVMIEGGSQVIKECLSNPMLPIHSLIVT 178 Query: 315 RSQIVIG 321 S + +G Sbjct: 179 VSPMFLG 185 >gi|330504655|ref|YP_004381524.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina NK-01] gi|328918941|gb|AEB59772.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina NK-01] Length = 158 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 64/143 (44%), Gaps = 26/143 (18%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL +R G V ++V+DG V+G+G CP HAE Sbjct: 10 SRDEHFMRLALAQARLGAGQGEV--PVGAVLVQDGEVVGQGFN----CPILRHDPSAHAE 63 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A + + G+T YVTLEPCS CA I+ I RVV +P V Sbjct: 64 MVAIRAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVFAASEPRAGV 117 Query: 112 SGRGLQWLSQKGIIVDRMMESEG 134 + Q+ Q G + R++ G Sbjct: 118 AISQGQFFDQ-GFLNHRVLVEGG 139 >gi|90579814|ref|ZP_01235622.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14] gi|90438699|gb|EAS63882.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14] Length = 175 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M V D FM A+ + V ++V +G V+G G + + HAE Sbjct: 4 MEVEPNDEYFMRRAIELAA--KAEEEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAE 61 Query: 57 VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +AG E R T YVTLEPC P CA ++ C + +VV DD Sbjct: 62 IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115 Query: 112 SGRGLQWLSQKGI 124 +G + LS G+ Sbjct: 116 AGSTMNLLSYDGV 128 >gi|91225086|ref|ZP_01260308.1| YfhC protein [Vibrio alginolyticus 12G01] gi|91190029|gb|EAS76300.1| YfhC protein [Vibrio alginolyticus 12G01] Length = 169 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 29/159 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG +I G + + HAE+Q L +AG++ T YVTLEPC Sbjct: 19 VGAVLVKDGEIIAEGRNRSIGTHDATAHAEIQTLRKAGQKLENYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++RVV PD++ G Q ++ ++E E Sbjct: 77 ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 130 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQ--DNMIGMAGCGS 171 + L A+ R +R I K + +N G GS Sbjct: 131 RTQLQAFFKR---RRKEIKAKKQAQKALENRESEQGSGS 166 >gi|224824536|ref|ZP_03697643.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002] gi|224603029|gb|EEG09205.1| CMP/dCMP deaminase zinc-binding [Lutiella nitroferrum 2002] Length = 242 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 17/125 (13%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 RFM+ A+R ++ V ++VK+G +IGRG VT++ HAE+ AL EA Sbjct: 96 RFMAEAIRLAK--AAAAEGEVPVGAVVVKEGRIIGRGFNRPVTSHDPSAHAEMVALREAA 153 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 G YVTLEPC P C I+ + RV+ DP + +G L Sbjct: 154 ATLGNYRLSGCDLYVTLEPC------PMCGGAILHSRLDRVIYGARDPKIGAAGSVLNLF 207 Query: 120 SQKGI 124 ++ + Sbjct: 208 GERAL 212 >gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1] gi|116062718|dbj|BAA80270.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1] Length = 220 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 69/143 (48%), Gaps = 8/143 (5%) Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA +DA++VG T + D P LT RL + SP+R+++D K+ D ++ Sbjct: 37 HKYRASADAVMVGSRTAVLDRPRLTVRLA--RGRSPLRVVVDSGLKVPPDVAGLRR---G 91 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAH 300 V++ E + ++ + ++ DL++ + +L R GV L+VEGG + Sbjct: 92 SVLVTAEGHSRERLKPYLERGVEVVEAGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNC 151 Query: 301 SFINSRLVDSIILYRSQIVIGEG 323 + + LVD + + + G G Sbjct: 152 AMLEKGLVDEVRATIAPYIFGGG 174 >gi|303320905|ref|XP_003070447.1| Cytidine and deoxycytidylate deaminase zinc-binding domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110143|gb|EER28302.1| Cytidine and deoxycytidylate deaminase zinc-binding domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320033053|gb|EFW15002.1| tRNA-specific adenosine deaminase subunit TAD2 [Coccidioides posadasii str. Silveira] Length = 207 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/157 (31%), Positives = 71/157 (45%), Gaps = 28/157 (17%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 +FM AL+ + + + T V C++V DG VIGRG+ + G HAE A+EEA Sbjct: 30 QFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGTRHAEFLAIEEAL 87 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG--L 116 R YVT+EPC CA + + IRRV CV+D R G G L Sbjct: 88 RSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND---RFGGTGGVL 138 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148 S + I + + +E + L + ++ EK Sbjct: 139 NLHSDRAIDPPYTVYGGIFRNEAIMLLRRFYIQENEK 175 >gi|146308436|ref|YP_001188901.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp] gi|145576637|gb|ABP86169.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina ymp] Length = 158 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 65/143 (45%), Gaps = 26/143 (18%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL +R +G V ++V+DG V+G+G CP HAE Sbjct: 10 SRDEHFMRLALVQAR--LGAEQGEVPVGAVLVQDGEVVGQGFN----CPILRHDPSAHAE 63 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A + + G+T YVTLEPCS CA I+ I RVV +P V Sbjct: 64 MVAIRAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVYAASEPRAGV 117 Query: 112 SGRGLQWLSQKGIIVDRMMESEG 134 + Q+ Q G + R++ G Sbjct: 118 AISQGQFFDQ-GFLNHRVLVEGG 139 >gi|253996102|ref|YP_003048166.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8] gi|253982781|gb|ACT47639.1| CMP/dCMP deaminase zinc-binding [Methylotenera mobilis JLW8] Length = 165 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 71/163 (43%), Gaps = 25/163 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ AL ++ L P V ++VKDG++IGRG +T + HAE+QA+ + Sbjct: 12 DQAFMNIALTLAK-QAALAGEVP-VGAIVVKDGVIIGRGSNAPITLHDPSAHAEIQAMRD 69 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR--- 114 A + T YVTLEPC+ CA I I ++V D G Sbjct: 70 AAQHLGNYRLVDCTLYVTLEPCA------MCAGAIQHARIAKLVYGASDQKTGACGSVVN 123 Query: 115 --GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 Q L+ + ++ E + L ++ + E+R L+ Sbjct: 124 LMAEQKLNHHTTVASGLLADECGMMLSSFFS---ERRKQAKLR 163 >gi|257458848|ref|ZP_05623971.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] gi|257443836|gb|EEV18956.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] Length = 147 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 66/143 (46%), Gaps = 12/143 (8%) Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRM 129 +Y EPC+H GR+P CA+ + + G+ RVV+ D + + +G G + L GI V D Sbjct: 3 SYAAFEPCAHRGRTPSCAELLAQLGLSRVVIGTRDTNAQAAG-GAEILLCGGIEVKFDVC 61 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + ++ YL R+ +KI V+ + + GS F VH LR Sbjct: 62 HAAAEELAEPFYLARE---GGFCFIKINVALNGAV-HGRIGSEKQRAF-----VHELRGV 112 Query: 190 SDAILVGIGTVLADDPELTCRLN 212 D + VG TV AD P + N Sbjct: 113 CDYVGVGGQTVRADRPNWMLQPN 135 >gi|169830233|ref|YP_001716215.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C] gi|169637077|gb|ACA58583.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis audaxviator MP104C] Length = 156 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 61/130 (46%), Gaps = 17/130 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +P + A +M ALR + V ++V+DG +IGRG HAE Sbjct: 4 VPDLAVHAGYMREALREA--EKAYAKGEVPVGAVVVQDGTIIGRGHNLREADNDASAHAE 61 Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +A + + GAT YVT+EPC P CA +++ +RRVV DP Sbjct: 62 LLAMRQAAQVSGDWRLSGATVYVTMEPC------PMCAGALVQFRVRRVVYGTADPKAGA 115 Query: 112 SGRGLQWLSQ 121 +G ++ L + Sbjct: 116 AGSVVELLRE 125 >gi|311898175|dbj|BAJ30583.1| putative diaminohydroxyphosphoribosylamino- pyrimidine deaminase [Kitasatospora setae KM-6054] Length = 153 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 9/146 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRG----VTAYGGCPHAEVQA 59 + D R+M A+ S+ + T SV +IV DG V+ G V A A + Sbjct: 7 AADLRWMRRAIELSK-RCPPSRTAFSVGAVIVGADGEVLAEGHSREVDAVNHAEEAALGK 65 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQ 117 L R AT Y TLEPC P PCA+ I+ G+ RVVV +P + V+ +G Sbjct: 66 LPAGDPRLRAATVYSTLEPCGQRASRPHPCAELIVAAGVPRVVVAWREPSLFVAACQGTA 125 Query: 118 WLSQKGIIVDRMME-SEGKIFLHAYL 142 L+ G+ V + E +E ++A+L Sbjct: 126 LLTAAGVEVIELPELAEEARAVNAHL 151 >gi|119179553|ref|XP_001241350.1| hypothetical protein CIMG_08513 [Coccidioides immitis RS] Length = 230 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 56/117 (47%), Gaps = 21/117 (17%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 +FM AL+ + + + T V C++V DG VIGRG+ + G HAE A+EEA Sbjct: 53 QFMREALQMAEQALAIGET--PVGCVLVHDGKVIGRGMNDTNRSLNGTRHAEFLAIEEAL 110 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG 115 R YVT+EPC CA + + IRRV CV+D R G G Sbjct: 111 RSYPRSIFRTTDLYVTVEPCIM------CASLLRQNYIRRVFFGCVND---RFGGTG 158 >gi|304405747|ref|ZP_07387405.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9] gi|304344990|gb|EFM10826.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9] Length = 148 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + +IV++G VIGRG T + HAE+ A+ EA + +T YVTLEPC Sbjct: 19 IGAVIVRNGEVIGRGYNLRETDHDATAHAEIIAIREASKHIEAWRLLDSTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ ++RVV DP +G + L + Sbjct: 77 ----PMCAGAIVQSRVKRVVYGTHDPKAGCAGTLMNLLQE 112 >gi|62327216|ref|YP_223954.1| deoxycytidylate deaminase [Phage phiJL001] gi|50059534|gb|AAT69506.1| deoxycytidylate deaminase [Phage phiJL001] Length = 244 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 33/123 (26%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP----------- 53 A++ L+ + + L S +PS A ++ +D V+G G Y G P Sbjct: 104 AKWDRDYLKLAEFWANLKSKDPSTKVGAVVVSEDNRVVGMG---YNGFPVGVEDSRERLE 160 Query: 54 ----------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ AG +A+G T Y TL PC+ CA+ II+ GIRRVV Sbjct: 161 DRPTKYMYVVHAEPNAILTAGLQAKGGTLYCTLFPCNE------CAKLIIQSGIRRVVSW 214 Query: 104 VDD 106 D Sbjct: 215 ASD 217 >gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces clavuligerus ATCC 27064] gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 227 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/184 (25%), Positives = 81/184 (44%), Gaps = 8/184 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A++ D + A + ++ ++V +RAQSDAIL+G TV D+P L Sbjct: 4 RPYVVLSAAMTVDGYLDDASPERLLLSNAADFDRVDQVRAQSDAILIGATTVRKDNPRLL 63 Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R+ + P+++ + LS D VI V + + V Sbjct: 64 VNSDERRAKRVADGKSAYPLKVTVTRTGDLSADLNFWHHGGKKLVITVDDAVEKVRTTLG 123 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ + D RD +L L R V L+VEGG + + + L D + L + +++ Sbjct: 124 DLADVVSVGPDLRDWGLVLDELGRRNVGQLMVEGGGTIHTQLMAADLADEVHLAIAPLLV 183 Query: 321 GEGG 324 G+ G Sbjct: 184 GQPG 187 >gi|326796823|ref|YP_004314643.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea MMB-1] gi|326547587|gb|ADZ92807.1| CMP/dCMP deaminase zinc-binding protein [Marinomonas mediterranea MMB-1] Length = 159 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 57/126 (45%), Gaps = 33/126 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V++ +IGRG +T HAE+QA+ +A GAT YVTLEPCS Sbjct: 25 VGAIVVQNDEIIGRGFNRPITTCDPTAHAEIQAIRDACANVNNYRLPGATLYVTLEPCSM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 CA I+ I +VV +P V+ ES+G+ F A+ Sbjct: 85 ------CAGAIVHARIEKVVYGATEPKSGVT------------------ESQGRFFEQAF 120 Query: 142 LTRQVE 147 L +VE Sbjct: 121 LNHKVE 126 >gi|315230916|ref|YP_004071352.1| carbon monoxide dehydrogenase CooS-like protein subunit [Thermococcus barophilus MP] gi|315183944|gb|ADT84129.1| carbon monoxide dehydrogenase CooS-like protein subunit [Thermococcus barophilus MP] Length = 633 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 9/153 (5%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV--QALEEAGEEARGATA 72 ++ + HV LT LI +D +V+G G H + +A + AGE R Sbjct: 457 VKHNHSHVTLTKE------LIKRDILVVGTGCWGIAAAMHGLLTPEAAKMAGEGLRAVCE 510 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 + + PC H G C++ +I G + VD PD+ V+G +W+S+K + + + Sbjct: 511 TLGIPPCLHMGSCVDCSRILIVLGALAEALGVDIPDLPVAGSAPEWMSEKAVSIGTYFVA 570 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 G +F H + V +T + ++++G Sbjct: 571 SG-VFTHLGVVPPVLGSQKVTRLLTDEIEDLLG 602 >gi|269962366|ref|ZP_06176716.1| zinc-binding domain protein [Vibrio harveyi 1DA3] gi|269832862|gb|EEZ86971.1| zinc-binding domain protein [Vibrio harveyi 1DA3] Length = 164 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 27/148 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG ++ G + A+ HAE+Q L +AGE T YVTLEPC Sbjct: 19 VGAVLVKDGEIVAEGWNRSICAHDATAHAEIQTLRKAGEALENYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++RVV PD++ G Q + ++E E Sbjct: 77 ----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFKSQAAYHYATVESGLLEDEC 130 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + L A+ R +R I K + N Sbjct: 131 RSQLQAFFKR---RRKEIKAKKQAQRAN 155 >gi|325921804|ref|ZP_08183621.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865] gi|325547681|gb|EGD18718.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865] Length = 165 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 15/119 (12%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D ++M AL+ + P A L+ DG V+G G + ++ HAE+ A Sbjct: 8 SPIDQQWMQRALQLAERAERDYDEIPVGALLVDADGNVLGEGWNFNIASHDPTAHAEIMA 67 Query: 60 LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + EAG G T YVTLEPC+ CA +I I RVV DP G Sbjct: 68 MREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGACG 120 >gi|156973452|ref|YP_001444359.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116] gi|156525046|gb|ABU70132.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116] Length = 164 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 64/142 (45%), Gaps = 29/142 (20%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V ++VKDG +I G + A+ HAE+Q L +AG EA G T YVTLEPC Sbjct: 19 VGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAG-EALGNYRLLDTTLYVTLEPC- 76 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESE 133 P CA ++ ++RVV PD++ G Q + + ++E E Sbjct: 77 -----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFESQAAYHYATVENGLLEEE 129 Query: 134 GKIFLHAYLTRQVEKRSHITLK 155 + L A+ R +R I K Sbjct: 130 CRSQLQAFFKR---RRKEIKAK 148 >gi|262384379|ref|ZP_06077514.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B] gi|262294082|gb|EEY82015.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_33B] Length = 144 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 38/144 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A + W V L+VKD ++I G Y G P Sbjct: 11 LDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDG---YNGTPAGFENVCEDENN 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + ++GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVY- 117 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127 D R++ G + L + GIIVD Sbjct: 118 --SEDYRIAD-GCELLKRAGIIVD 138 >gi|145595083|ref|YP_001159380.1| deaminase-reductase domain-containing protein [Salinispora tropica CNB-440] gi|145304420|gb|ABP55002.1| bifunctional deaminase-reductase domain protein [Salinispora tropica CNB-440] Length = 229 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 89/198 (44%), Gaps = 14/198 (7%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R ++ L A S D I A + ++ +++ +RA DAILVG GTV DDP Sbjct: 1 MTERPYVLLSCATSLDGYIDDATGQRLLLSNDADLDRIDEVRAGCDAILVGAGTVRRDDP 60 Query: 206 EL---------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 L GL SP R+ + L +++ T A +I + V Sbjct: 61 RLLVRSAARRAERVARGLAA-SPTRVTVTGCGDLDPGARVFTTGATARLIYCATSG--VE 117 Query: 257 ALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + R +I + + DL +L L RG+ LLVEGGA++ F+ S L D + L Sbjct: 118 KVRERLGDIATVVHSGEPVDLAAVLADLAARGIGRLLVEGGASMHTQFLASGLADELHLV 177 Query: 315 RSQIVIGEGGIPSPLEEG 332 + +G+G P + +G Sbjct: 178 VAPFFVGDGRAPRFVRDG 195 >gi|77166061|ref|YP_344586.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Nitrosococcus oceani ATCC 19707] gi|254436457|ref|ZP_05049961.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Nitrosococcus oceani AFC27] gi|76884375|gb|ABA59056.1| tRNA-adenosine deaminase [Nitrosococcus oceani ATCC 19707] gi|207087927|gb|EDZ65202.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Nitrosococcus oceani AFC27] Length = 155 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 69/145 (47%), Gaps = 19/145 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P D +M AL +R+ + V ++V++G ++G+G + ++ HAE+ Sbjct: 5 PPGEKDIPWMHHALALARY--AEEAGEVPVGAVVVQEGEMVGKGWNCPINSHDPTAHAEI 62 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 QA+ A ++ G T YVTLEPC+ CA II+ I+RVV DP + Sbjct: 63 QAIRAASQKLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIQRVVFGAFDPKGGAA 116 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137 G L L G ++ +E +G + Sbjct: 117 GSALNIL--PGERLNHQVECQGGVL 139 >gi|187735588|ref|YP_001877700.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC BAA-835] gi|187425640|gb|ACD04919.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC BAA-835] Length = 181 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/122 (36%), Positives = 52/122 (42%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D FM A++ SR L V ++VKDG VIGRG T HAE Sbjct: 7 MEMPGSDEWFMRQAMKESR--KALVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAE 64 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL A E G T YVT EPC P CA I+ C RVV D Sbjct: 65 MIALTAAQEALGDWRLEGCTLYVTKEPC------PMCAGAIVHCRPDRVVFGCPDAKTGA 118 Query: 112 SG 113 +G Sbjct: 119 AG 120 >gi|217031852|ref|ZP_03437355.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128] gi|216946504|gb|EEC25106.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128] Length = 276 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 111/255 (43%), Gaps = 47/255 (18%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 +TLEPC+ YG++P C++ + +RVV+ ++ + + G ++ I+ +E++ Sbjct: 33 ITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARLQKARIETIICHNLENK 92 Query: 134 GKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 K L + R +E++ L K+A+ M G G ITG S H RA + Sbjct: 93 AKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK--ITGQKSVIFTHNQRAICNT 145 Query: 193 ILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD--SKIIKTALLAPVIIV 248 +++ T+ D+P L R + Q +P IL K S+D SK+ AP +V Sbjct: 146 LIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILS---KRSIDPNSKVFS----APNRLV 198 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 DP +DL + +G +EGG + S N + Sbjct: 199 NTFHDP------------------KDLP------LEKGFN--FIEGGWELFESLRNK--I 230 Query: 309 DSIILYRSQIVIGEG 323 D+++L+ +IGE Sbjct: 231 DALLLHSHASMIGEA 245 >gi|297582358|ref|YP_003698138.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens MLS10] gi|297140815|gb|ADH97572.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens MLS10] Length = 174 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/86 (41%), Positives = 43/86 (50%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKD I+I RG T HAE+ A+EEA G T YVTLEPC Sbjct: 31 IGAVIVKDDIIIARGYNERETKQRATGHAELVAIEEACRILKTWRLEGCTLYVTLEPC-- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 P CA I++ I RVV DDP Sbjct: 89 ----PMCAGAIVQSRIDRVVYGADDP 110 >gi|27363814|ref|NP_759342.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6] gi|27359931|gb|AAO08869.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6] Length = 181 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 22/159 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P S D FM A+ + + + V ++VKDG VI G + + HAE Sbjct: 6 QPFSLQDEVFMRRAIELAA--IAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAE 63 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 +Q L +AG+ T YVTLEPC P CA ++ ++R+V D Sbjct: 64 IQTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGA 117 Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQ 145 +G L S + I ++E E + L A+ R+ Sbjct: 118 AGTVLDLFSSQAAYHYATIEKGLLELECREQLQAFFKRR 156 >gi|311898176|dbj|BAJ30584.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase [Kitasatospora setae KM-6054] Length = 231 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 76/187 (40%), Gaps = 9/187 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL- 207 R H+ L AVS D + A + ++ ++V LRA SDAILVG GT+ AD+P L Sbjct: 3 RPHVLLSAAVSIDGHLDDASPERLLLSNAADFDRVDALRADSDAILVGGGTLRADNPRLL 62 Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R P+++ L +L + T + A Sbjct: 63 VNSPERRAARTAAGLPAYPLKVTLSASGRLDPALRFWHTGGAKLAYTTDATAPALAAALA 122 Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ L +L L RGV L+VEGG +V F+ L D + L + ++ Sbjct: 123 GAPGTEVVGLGAAVPLGAVLDDLGARGVRRLMVEGGGSVHTRFLAEGLADELQLAVAPLL 182 Query: 320 IGEGGIP 326 +G+ P Sbjct: 183 VGQADAP 189 >gi|223935243|ref|ZP_03627161.1| bifunctional deaminase-reductase domain protein [bacterium Ellin514] gi|223896127|gb|EEF62570.1| bifunctional deaminase-reductase domain protein [bacterium Ellin514] Length = 244 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 54/189 (28%), Positives = 82/189 (43%), Gaps = 15/189 (7%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------LADDP 205 + L IA + D + A VP + + LR ++DA++ G TV + P Sbjct: 16 VYLNIATTADGKLAPANRKFVPFGSKRDHDHLLELRTEADAVMSGARTVDLFPVNMGPGP 75 Query: 206 ELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FR 261 R+ NGL E++ +RI++ L S+I K +P+II+T P L R Sbjct: 76 AKYRRMRLKNGLAEYN-LRIVVSGSGSLDPRSEIFKHRF-SPIIILTSERAPESRLKKLR 133 Query: 262 KKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ C + D K L+ L + VT LL EGG V + + LVD I L Sbjct: 134 ALADEVMVCGGKEVDFKAALSWLREKWAVTRLLCEGGGEVNDALFRADLVDEIHLTLCPW 193 Query: 319 VIGEGGIPS 327 V G P+ Sbjct: 194 VFGGRNAPT 202 >gi|261252226|ref|ZP_05944799.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891] gi|260935617|gb|EEX91606.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891] Length = 178 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 25/159 (15%) Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53 M S F D RFM A+ + H P V ++VKDG +I G + + Sbjct: 1 MSESQFTPQDERFMRRAMELAA-HAETQGEVP-VGAVLVKDGEIIAEGWNESIGQHDATA 58 Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+Q + +AGE T YVTLEPC P CA ++ ++R+V D Sbjct: 59 HAEMQTIRKAGEVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLK 112 Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G L + + ++E E ++ L A+ Sbjct: 113 AGAAGTVLNLFEHQAAYHYADVEKGLLEDECRVQLQAFF 151 >gi|297380640|gb|ADI35527.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori v225d] Length = 276 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/185 (28%), Positives = 88/185 (47%), Gaps = 17/185 (9%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIVDRMMES 132 +TLEPC+ YG++P C+ + +RVV+ ++ + + G LQ +G++ + +E+ Sbjct: 33 ITLEPCNSYGKTPACSGLLEILKPKRVVIATEENEAKKGGLARLQKARIEGVVCES-LEN 91 Query: 133 EGKIFLHAYLTRQVEKRSHITL-KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 + K L + R +E++ L K+A+ M G G ITG S H RA D Sbjct: 92 KAKDLLLPF--RIMEQKGRFNLFKLALR---MNGDYHHGK--ITGQKSVIFTHNQRAICD 144 Query: 192 AILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 ++V T+ D+P L R + Q +P IL H + +SK+ AP +V Sbjct: 145 TLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILSKH-SIDPNSKVFS----APNRLVN 199 Query: 250 ENDDP 254 DP Sbjct: 200 VFYDP 204 >gi|317124169|ref|YP_004098281.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] gi|315588257|gb|ADU47554.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] Length = 230 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 10/186 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R ++ L +S D + + + ++ ++V RA SDAILVG T+ DDP L Sbjct: 3 ERPYVLLSCGMSIDGYLDTSASKRLLLSNAADFDRVDAERAASDAILVGASTIRKDDPRL 62 Query: 208 TCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 R GL SP ++ + H L ++ ++ P + Sbjct: 63 LVRSPERRADRVSRGLPA-SPTKVTVTSHADLDCNASFFTVGETEKLVYCASEAVPEASA 121 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + + +L L GRGV L+VEGG V + + L D + L + Sbjct: 122 RLSGVATVVDAGQPCTMHHVLEDLHGRGVRRLMVEGGGTVHTQLLTADLADELQLVVAPF 181 Query: 319 VIGEGG 324 +G+ Sbjct: 182 FVGDSA 187 >gi|167753725|ref|ZP_02425852.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216] gi|167658350|gb|EDS02480.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216] Length = 360 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 13/170 (7%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-- 209 +T+ AVS D + + ++ +VH LRA DAILVG T+ D+P L Sbjct: 3 VTVSTAVSADGYLDDRSPDRLILSTPEDWAEVHRLRAACDAILVGAETIRRDNPSLLVGD 62 Query: 210 ------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 R++ P+++ L +LS ++ ++ + +D L ++ Sbjct: 63 EVLRRERIDRGLSPDPVKVTLTASCRLSPEANFFTRGDQEKIVFTSCSDPGPL-----RQ 117 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 +I ++T L RG+ SLLVEGGAA F LVD+ L Sbjct: 118 VATVIPAAEITAALIVTELEKRGLRSLLVEGGAATLRMFFAENLVDTFRL 167 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 4/124 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D R++ A+ SR TS+ A ++ D + HAE +A+ +A Sbjct: 217 DRRYLQMAIDESRKCTPSTSSYCVGAVILTTDRKIFTGYTHETSPTHHAEQEAILKALAA 276 Query: 64 GEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G E RGAT Y ++EPCS P C++ II RRVV + +PD V +G L + Sbjct: 277 GVELRGATIYSSMEPCSERKSEPESCSELIIRHEFRRVVFALYEPDCFVCCQGALNLRRH 336 Query: 123 GIIV 126 I V Sbjct: 337 RIEV 340 >gi|90407089|ref|ZP_01215278.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3] gi|90311811|gb|EAS39907.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3] Length = 182 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 19/118 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D ++M AL + L V ++VKD VI G + ++ C HAEV A+ E Sbjct: 22 DEKWMQYALLLADKAEALGEV--PVGAVLVKDNEVIAEGWNLSILSHDACAHAEVMAVRE 79 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AG + + T YVTLEPC P CA ++ I+R+V PD++ G Sbjct: 80 AGHKLQNYRLIDCTLYVTLEPC------PMCAGALVHARIKRLVYGA--PDLKTGAAG 129 >gi|182418731|ref|ZP_02950004.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521] gi|237669698|ref|ZP_04529675.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377425|gb|EDT74981.1| tRNA-specific adenosine deaminase [Clostridium butyricum 5521] gi|237654772|gb|EEP52335.1| tRNA-specific adenosine deaminase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 149 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81 V +IVKDG++IGRG T HAE+ A++EA GA YVTLEPC Sbjct: 22 VGAVIVKDGVIIGRGHNLKETLNDVTAHAEILAIKEASNNLGDWRLDGAEMYVTLEPC-- 79 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P CA I++ I +V + + D+ G + L + Sbjct: 80 ----PMCASAIVQSRISKVYIGTFNKDMGACGSVISLLDSR 116 >gi|253580414|ref|ZP_04857679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848144|gb|EES76109.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 181 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 22/171 (12%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 RFM A+R ++ L + C+IV +G +I RG T HAE+ A+ +A Sbjct: 15 RFMKEAIRQAKKAEALEEV--PIGCVIVHEGKIIARGYNRRNTDKNTLSHAELNAIRKAS 72 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ G T YVTLEPC C+ +++ I VV+ + +G + L Sbjct: 73 KKLGDWRLEGCTMYVTLEPCQM------CSGALVQSRIDEVVIGCMNAKAGCAGSVMNLL 126 Query: 120 SQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 G I+ ++E E L + + EK+ + +Q+N G Sbjct: 127 QVDGFNHQVKIIQGVLEEECSSMLSEFFRKLREKKKQEKAALKAAQENPEG 177 >gi|297559747|ref|YP_003678721.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844195|gb|ADH66215.1| CMP/dCMP deaminase zinc-binding protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 156 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 8/143 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC-PHAEVQALEEA- 63 DAR++ + SR + T SV C +V DG V+G G + HAE AL E Sbjct: 13 DARWLRRTVELSR-SCPPSDTAFSVGCAVVAADGTVLGEGYSRRDDPHDHAEEAALREVD 71 Query: 64 GEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 ++ R GAT Y +LEPCS P C+ I+ + RVV +P V V G + L Sbjct: 72 ADDPRLAGATLYSSLEPCSSRASRPLSCSALILATPVARVVFAWREPSVFVDCDGAERLR 131 Query: 121 QKG-IIVDRMMESEGKIFLHAYL 142 G +V+R ++G ++A+L Sbjct: 132 AAGRTVVERPDLADGVREVNAHL 154 >gi|23097481|ref|NP_690947.1| hypothetical protein OB0026 [Oceanobacillus iheyensis HTE831] gi|22775704|dbj|BAC11982.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 166 Score = 50.1 bits (118), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81 + +IV DG ++G+G + HAE+ A++EA E T YVTLEPC Sbjct: 32 IGAVIVHDGEIVGKGFNLRESMQATLTHAELLAMQEANNEIGSWRLEDCTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I++ ++RVV DP +G + L++ + ++E + Sbjct: 90 ----PMCAGAIVQSRMKRVVYGAPDPKAGCAGTIMNLLNEPRFNHQVEVTSGVLEQQCST 145 Query: 137 FLHAYLTRQVEKRS 150 L + EK+S Sbjct: 146 ILKEFFKELREKKS 159 >gi|307267454|ref|ZP_07548942.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii Rt8.B1] gi|306917535|gb|EFN47821.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii Rt8.B1] Length = 148 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 RFM AA+ ++ L V +IVKDG +IG+G ++ HAE+ A++EA Sbjct: 4 RFMEAAILEAKKSYQLGEV--PVGAVIVKDGQIIGKGFNQKESSNDATAHAEILAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116 + + YVTLEPC P CA I+E I+RV + + +G + Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115 Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142 +L K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|295132300|ref|YP_003582976.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia profunda SM-A87] gi|294980315|gb|ADF50780.1| cytidine/deoxycytidylate deaminase family protein [Zunongwangia profunda SM-A87] Length = 143 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR +R W V +IVKD ++I G Y G P Sbjct: 8 KYDKAYLRIAREWSKLSHCKRKQVGAVIVKDRMIISDG---YNGTPSGFENFCEDEEGYT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + +GAT Y+T+ PC C++ I + GI R+V CVD Sbjct: 65 KWYVLHAEANAILKVAASTQSCQGATLYITMSPC------KECSKLIHQAGITRLVYCVD 118 Query: 106 DPDVRVSGRGLQWLSQKGI 124 D GL +L + G+ Sbjct: 119 YKD----NSGLDFLKKAGV 133 >gi|326390318|ref|ZP_08211877.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW 200] gi|325993595|gb|EGD52028.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW 200] Length = 148 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 67/148 (45%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 RFM AA+ ++ L V +IVKDG +IG+G ++ HAE+ A++EA Sbjct: 4 RFMEAAILEAKKSYQLGEV--PVGAVIVKDGQIIGKGFNQKESSNDATTHAEILAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116 + + YVTLEPC P CA I+E I+RV + + +G + Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115 Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142 +L K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|158319077|ref|YP_001511584.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs] gi|158139276|gb|ABW17588.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs] Length = 154 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 + FM A+ ++ + ++VKD +IGRG T HAE+ A++ Sbjct: 3 LEENFMLEAIEEAK--KAFNKKEVPIGAVVVKDNEIIGRGHNLRETTKNSISHAEIMAIQ 60 Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 EA G T YVT+EPC P CA I++ I++VV+ DP G + Sbjct: 61 EACKFLGGWRLTDCTLYVTIEPC------PMCAGAILQSRIQKVVIGAMDPKAGACGSLV 114 Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149 L + + I ++E E + + + EKR Sbjct: 115 NLLNDSRFNHQTEIEQGVLEEECSLLMKEFFKALREKR 152 >gi|254509189|ref|ZP_05121287.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16] gi|219547894|gb|EED24921.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16] Length = 187 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 70/158 (44%), Gaps = 22/158 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62 D ++M A+ + H P V ++VKDG +I G GC HAE+Q + + Sbjct: 17 DEQYMRRAMELA-AHAETEGEVP-VGAVLVKDGEIIAEGWNQSIGCHDATAHAEMQTIRK 74 Query: 63 AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG E R T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 75 AGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLN 128 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150 + + ++E E ++ L ++ R+ +++ Sbjct: 129 LFEHQAAYHYADVEQGLLEEECRVQLQSFFKRRRKEKK 166 >gi|238059485|ref|ZP_04604194.1| deaminase-reductase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237881296|gb|EEP70124.1| deaminase-reductase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 296 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 57/199 (28%), Positives = 84/199 (42%), Gaps = 46/199 (23%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ L A+S D I A + ++ ++V +RA DAILVG TV ADDP L R Sbjct: 31 YVLLSCAMSIDGYIDDATDQRLLLSNEADLDRVDAVRASCDAILVGAATVRADDPRLVIR 90 Query: 211 ---------LNGLQEHSPMRII------LDP---HFKLSLDSKII--KTALLA------- 243 GL SP ++ LDP F + +I+ T++LA Sbjct: 91 SPERRRERAARGLPS-SPTKVTVTGSGDLDPAARFFTVGDADRIVYCATSVLAETRHRLG 149 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + V + DPV +++L L RGV L+VEGGAAV F+ Sbjct: 150 ALATVADGGDPV------------------GPRRVLADLAARGVRRLMVEGGAAVHTLFL 191 Query: 304 NSRLVDSIILYRSQIVIGE 322 + L D + L + +G Sbjct: 192 GAGLADELHLVVAPFFVGR 210 >gi|302325469|gb|ADL24670.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 155 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 19/136 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE- 65 M ALR + + + C+IVKDG+VIG+G HAE+ A+ A Sbjct: 1 MRMALR--QAQIAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEIIAIGTAAST 58 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G T YVTLEPC P CA I+ + R+V PD R G G Sbjct: 59 LDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIV--YGSPDSRFGGCGTTIDVI 110 Query: 122 KGIIVDRMMESEGKIF 137 G + R +E G I Sbjct: 111 TGNALKRAVEVTGGIL 126 >gi|262395051|ref|YP_003286905.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25] gi|262338645|gb|ACY52440.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25] Length = 182 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG +I G + HAE+Q L +AG++ T YVTLEPC Sbjct: 32 VGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQKIENYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++RVV PD++ G Q ++ ++E E Sbjct: 90 ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 143 Query: 135 KIFLHAYLTRQVEKRSHITLK 155 + L A+ R +R I K Sbjct: 144 RTQLQAFFKR---RRKEIKAK 161 >gi|315923999|ref|ZP_07920227.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622839|gb|EFV02792.1| deoxycytidylate deaminase [Pseudoramibacter alactolyticus ATCC 23263] Length = 165 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 12/90 (13%) Query: 54 HAEVQALEEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD---DPDV 109 HAE A+ +G + +GAT YVTL PC+ C + II+CGI++VV D D D Sbjct: 83 HAEFNAILNSGAKTLQGATLYVTLFPCNE------CTKAIIQCGIKKVVYMEDKYPDSDA 136 Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 ++ + + ++ G++ R E I LH Sbjct: 137 VIAAKRM--MNMTGVVYQRYNEPHRDITLH 164 >gi|330807694|ref|YP_004352156.1| deaminase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375802|gb|AEA67152.1| putative deaminase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 165 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 16/113 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V+DG +IGRG ++ + HAE+ A+ A + G+T YVTLEPCS Sbjct: 37 VGAVLVQDGEIIGRGFNCPISGHDPSAHAEMVAIRAAAQAVSNYRLPGSTLYVTLEPCSM 96 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 CA I+ I RVV +P + Q+ SQ G + R+M G Sbjct: 97 ------CAGLIVHSRIARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVMYEGG 142 >gi|153834810|ref|ZP_01987477.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01] gi|148868738|gb|EDL67812.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01] Length = 177 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 26/132 (19%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V ++VKDG +I G + A+ HAE+Q L +AG +A G T YVTLEPC Sbjct: 32 VGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAG-KALGNYRLLDTTLYVTLEPC- 89 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESE 133 P CA ++ ++RVV PD++ G Q + + ++E E Sbjct: 90 -----PMCAGALLHSRVKRVVYGA--PDLKAGAAGTVLNLFESQAAYHYATVENGLLEEE 142 Query: 134 GKIFLHAYLTRQ 145 + L A+ R+ Sbjct: 143 CRSQLQAFFKRR 154 >gi|328472552|gb|EGF43415.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 10329] Length = 199 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 51/163 (31%), Positives = 70/163 (42%), Gaps = 25/163 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL + L P V ++VKDG VI G + ++ HAE+Q L Sbjct: 35 DEIFMRRALALAE-QAELEGEVP-VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRN 92 Query: 63 AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG E R T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 93 AGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLN 146 Query: 118 WLSQKG----IIVDR-MMESEGKIFLHAYLTRQVEKRSHITLK 155 + V+R ++E E + L A+ R +R I K Sbjct: 147 LFESQAAYHYATVERGLLEDECREQLQAFFKR---RRKEIKAK 186 >gi|304311855|ref|YP_003811453.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma proteobacterium HdN1] gi|301797588|emb|CBL45809.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma proteobacterium HdN1] Length = 171 Score = 49.3 bits (116), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 55/117 (47%), Gaps = 25/117 (21%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HA 55 S+ D R+M AL +R G + V ++V+DG IG G CP HA Sbjct: 16 SAEDRRWMERALALARQ--GAEAGEVPVGAVVVRDGEAIGEGFN----CPIGTHDPTAHA 69 Query: 56 EVQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 E+ AL AG E R GAT YV+LEPC+ CA I+ I RVV +P Sbjct: 70 EICALRAAGRAIENYRLAGATLYVSLEPCAM------CAGAIVHARIDRVVYAAMEP 120 >gi|260589044|ref|ZP_05854957.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583] gi|331083249|ref|ZP_08332362.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540823|gb|EEX21392.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583] gi|330404330|gb|EGG83875.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium 6_1_63FAA] Length = 164 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D RFM A + + L + C+IV +G +I RG T HAE+ A+ + Sbjct: 4 DERFMREAKKQAMKAYALREV--PIGCVIVYEGKIIARGYNRRNTDKNTVSHAEINAIRK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ G T YVTLEPC CA II+ + RVV+ +P +G L Sbjct: 62 ASKKLGDWRLEGCTLYVTLEPCQM------CAGAIIQARVDRVVIGSMNPKAGCAGSVLN 115 Query: 118 WLSQKGI 124 L G Sbjct: 116 LLEMDGF 122 >gi|15920477|ref|NP_376146.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus tokodaii str. 7] gi|15621260|dbj|BAB65255.1| 213aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 213 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 22/155 (14%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K ++H+LR + DA+LVG TV D+P+L + + +P+R+ + L+ D + Sbjct: 32 KMRLHILRTEVDAVLVGSNTVRIDNPKLLVKY--AKGRNPVRVTISES--LNFDPNLNIF 87 Query: 240 ALLAPVIIVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-----GVT 288 ++ II T N+D A +KK + I R L+KL + ++ GV Sbjct: 88 SVPPDTIIYTTYQAYLRNEDK--ANELKKKGVKI-----RVLEKLSSCIIAEDLYNLGVK 140 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +L+EGG +FI D I + S + G G Sbjct: 141 RILIEGGGRTIWNFIKDNCFDEIRITISPKIFGNG 175 >gi|325917446|ref|ZP_08179655.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937] gi|325536320|gb|EGD08107.1| tRNA-adenosine deaminase [Xanthomonas vesicatoria ATCC 35937] Length = 171 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL+ + P A LI +G V+G G + ++ HAE+ Sbjct: 12 PQAAIDTHWMQHALQLAERAERDYDEIPVGAVLIDAEGQVLGEGWNYNIASHDPSAHAEI 71 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ E G G T YVTLEPC+ CA +I I RVV DP Sbjct: 72 MAMREGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 125 Query: 113 G 113 G Sbjct: 126 G 126 >gi|157150388|ref|YP_001449474.1| putative cytidine/deoxycytidylate deaminase [Streptococcus gordonii str. Challis substr. CH1] gi|157075182|gb|ABV09865.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus gordonii str. Challis substr. CH1] Length = 177 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ +R + L + + C+IV+DG +IGRG A HAE+ A+EEA Sbjct: 33 FMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHAEIMAIEEANH 90 Query: 66 EARG-----ATAYVTLEPC 79 G T +VT+EPC Sbjct: 91 HENGWRLLDTTLFVTIEPC 109 >gi|298207386|ref|YP_003715565.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter atlanticus HTCC2559] gi|83850022|gb|EAP87890.1| cytidine/deoxycytidylate deaminase family protein [Croceibacter atlanticus HTCC2559] Length = 143 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 36/144 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR +R W V LIVKD ++I G Y G P Sbjct: 8 KYDKAYLRIAREWGQLSHCKRKQVGALIVKDRMIISDG---YNGTPTGFENYCEDDEGYT 64 Query: 54 -----HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A L+ AG + R AT Y+T+ PC C++ I + GI+RVV D Sbjct: 65 KWYVLHAEANAILKVAGSTQSCRDATLYITMSPC------KDCSKLIHQSGIKRVVYQHD 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129 D GL++L + G++++ + Sbjct: 119 YKD----NSGLKFLEKAGVLIEHI 138 >gi|291537693|emb|CBL10805.1| Cytosine/adenosine deaminases [Roseburia intestinalis M50/1] Length = 154 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M AA+R ++ L + C+IV+D +I RG T HAE+ A+ + Sbjct: 4 DEKYMKAAIRQAKKAYALDEV--PIGCVIVQDDKIIARGYNRRNTEGNTLAHAELTAIRK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC CA I++ +++VV+ +P +G L Sbjct: 62 ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSVLN 115 Query: 118 WLS 120 L Sbjct: 116 LLQ 118 >gi|121998459|ref|YP_001003246.1| CMP/dCMP deaminase, zinc-binding [Halorhodospira halophila SL1] gi|121589864|gb|ABM62444.1| CMP/dCMP deaminase, zinc-binding protein [Halorhodospira halophila SL1] Length = 142 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66 M+ AL +R+ V ++V+DG+++G G + + HAE+ AL AG+ Sbjct: 1 MARALELARYAA--DQGEVPVGAVVVRDGVLLGEGRNQPIVSRDPTAHAEINALRAAGQA 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A GAT YVTLEPC CA +I I R+V DP G L Sbjct: 59 AGAYRLPGATLYVTLEPCFM------CAGALIHARIERLVYGAADPKTGACGGQFDLLGL 112 Query: 122 KG 123 G Sbjct: 113 PG 114 >gi|116329381|ref|YP_799101.1| pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330018|ref|YP_799736.1| pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122125|gb|ABJ80168.1| Pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123707|gb|ABJ74978.1| Pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 217 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 24/212 (11%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++++ +A++ D + ++ K ++ +R+++D +++G ++L DDP + R Sbjct: 6 NVSINMAMTLDGKVSRPDKRWYGLSSRNDKKRMDEIRSKADVLILGKNSILNDDPVIHLR 65 Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNI--- 265 + +++ P +IL L D K+ + + P+I + EN VL N+ Sbjct: 66 YVRDIKDPRP--VILLRSGTLPEDKKVFRFSKQPPLIFCLNENYSSVL------DNLCSV 117 Query: 266 -NIIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 I+ DL L L IL G +L+EGG ++ SF S L+ I L +IG+ Sbjct: 118 AEIVSLPGNDLSPLEVLKILSEMGYREILLEGGPSLNDSFFRSDLISRIYLTIVPFLIGQ 177 Query: 323 GGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 +PS P E YL NF + D S+V Sbjct: 178 KDLPSIAGGPKE--YL--NFDQKKWDLISSEV 205 >gi|77460805|ref|YP_350312.1| tRNA-adenosine deaminase [Pseudomonas fluorescens Pf0-1] gi|77384808|gb|ABA76321.1| putative deaminase [Pseudomonas fluorescens Pf0-1] Length = 165 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 43/155 (27%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL + L V ++V+DG +IGRG CP HAE Sbjct: 13 SRDRDFMREALELAAQGAALGEV--PVGAVLVQDGEIIGRGFN----CPISTSDPSAHAE 66 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A + G+T YVTLEPCS CA I+ + RVV +P Sbjct: 67 MVAIRAAAQAVDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVSRVVFGALEP---- 116 Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146 + GI+ +S+G+ F +L +V Sbjct: 117 ---------KAGIV-----QSQGQFFTQGFLNHRV 137 >gi|154505232|ref|ZP_02041970.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149] gi|153794430|gb|EDN76850.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149] Length = 179 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 17/125 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A+R ++ L + C+IV +IGRG HAE+QA+ + Sbjct: 23 DEKYMREAIRQAKKAYALEEV--PIGCVIVYQDKIIGRGYNRRTVDKNTLAHAELQAIRK 80 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC C+ I++ I+RVVV +P +G L Sbjct: 81 ASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQARIKRVVVGCMNPKAGCAGSILN 134 Query: 118 WLSQK 122 L K Sbjct: 135 LLDMK 139 >gi|150006872|ref|YP_001301615.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503] gi|255016096|ref|ZP_05288222.1| deoxycytidylate deaminase [Bacteroides sp. 2_1_7] gi|256842138|ref|ZP_05547643.1| deoxycytidylate deaminase [Parabacteroides sp. D13] gi|298377298|ref|ZP_06987251.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 3_1_19] gi|301308695|ref|ZP_07214647.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 20_3] gi|149935296|gb|ABR41993.1| deoxycytidylate deaminase [Parabacteroides distasonis ATCC 8503] gi|256736454|gb|EEU49783.1| deoxycytidylate deaminase [Parabacteroides sp. D13] gi|298265712|gb|EFI07372.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 3_1_19] gi|300833219|gb|EFK63837.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 20_3] Length = 144 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 38/144 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A + W V L+VKD ++I G Y G P Sbjct: 11 LDKRYLRMA---AIWAENSYCKRRQVGALLVKDKMIISDG---YNGTPAGFENVCEDENN 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + ++GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTKPYVLHAEANAITKVAASSNSSKGATIYVTSSPCIE------CAKLIIQSGIKRVVY- 117 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127 + R++ G + L + GIIVD Sbjct: 118 --SENYRIAD-GCELLKRAGIIVD 138 >gi|171463305|ref|YP_001797418.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192843|gb|ACB43804.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 152 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M ++ D ++M A+ + + + V ++VKDG VI + + + HAE Sbjct: 1 MTQAALDQQYMRMAI--EQAQLAAQAGEVPVGAVLVKDGQVIAKAFNKPIANHDPSAHAE 58 Query: 57 VQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL EA E R G+T YVTLEPC+ C+ ++ I RVV DP Sbjct: 59 MLALREAALAQENYRIPGSTLYVTLEPCAM------CSGAMLHARIDRVVFGAPDPKTGA 112 Query: 112 SGRGLQWLSQKGI 124 +G L + K I Sbjct: 113 AGSVLDLFASKQI 125 >gi|56478507|ref|YP_160096.1| cytosine/adenosine deaminase [Aromatoleum aromaticum EbN1] gi|56314550|emb|CAI09195.1| probable cytosine/adenosine deaminases [Aromatoleum aromaticum EbN1] Length = 154 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 17/125 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AAL +R G P V ++V DG ++GRG + + HAEV AL + Sbjct: 3 DEDFMRAALEQARM-AGACDEVP-VGAVVVLDGEIVGRGFNQPIRRHDPSAHAEVMALRD 60 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AGE G +VTLEPC+ C+ I+ + RVV DP V+G + Sbjct: 61 AGERLGNYRFPGCELFVTLEPCAM------CSGAIMHARVARVVFGARDPRTGVAGSIID 114 Query: 118 WLSQK 122 +++ Sbjct: 115 LFAER 119 >gi|121634737|ref|YP_974982.1| putative cytosine deaminase [Neisseria meningitidis FAM18] gi|120866443|emb|CAM10189.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria meningitidis FAM18] gi|325132183|gb|EGC54879.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M6190] gi|325136130|gb|EGC58739.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M0579] gi|325198167|gb|ADY93623.1| tRNA-specific adenosine deaminase [Neisseria meningitidis G2136] gi|325202278|gb|ADY97732.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M01-240149] Length = 239 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 2 PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F A FM AL ++ L P V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|313156981|gb|EFR56413.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Alistipes sp. HGB5] Length = 358 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 57/205 (27%), Positives = 78/205 (38%), Gaps = 60/205 (29%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR- 210 ITL AV+ D + + I+ +V+ LRA DAILVG T+ DDP L R Sbjct: 3 ITLSAAVTADGFLDDNSPRRLIISTPEDWAEVYRLRAAHDAILVGAETLRRDDPSLLVRD 62 Query: 211 --------------------LNGLQEHSP----------MRIILDPHFKLSLDSKIIKTA 240 L G E SP R + PH +DS Sbjct: 63 EEVRARRREQGLPPDIAKATLTGTGELSPGLRFFTEGEAERYVFSPH---EIDS------ 113 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 L + V + P+ A K ++T L RGV L+VEGGAAV Sbjct: 114 -LQNIATVISTEGPITA------------------KLIVTQLEKRGVERLMVEGGAAVLR 154 Query: 301 SFINSRLVDSIIL-YRSQIVIGEGG 324 F+ + D++ L Q+ +G G Sbjct: 155 MFLGEGMADTLRLAVNPQLRLGAAG 179 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D RF+ A+ R ++ A ++ DG + HAE +A+ + Sbjct: 212 TSAADLRFLKQAVDEGRKCTPSATSYCVGAVVVAADGRIFAGHTHETSPTHHAEQEAIAK 271 Query: 63 AGEEA---RGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A RGA Y ++EPCS P C Q +++ G R V + +PD V RG Sbjct: 272 ALAAGAPLRGAAMYSSMEPCSQRASEPESCTQLLLKYGFARAVFALYEPDCFVCCRGALT 331 Query: 119 LSQKGIIV 126 L + G+ V Sbjct: 332 LREAGVDV 339 >gi|269965211|ref|ZP_06179345.1| zinc-binding domain protein [Vibrio alginolyticus 40B] gi|269830197|gb|EEZ84424.1| zinc-binding domain protein [Vibrio alginolyticus 40B] Length = 169 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 27/162 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG +I G + HAE+Q L +AG++ T YVTLEPC Sbjct: 19 VGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQKLENYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++RVV PD++ G Q ++ ++E E Sbjct: 77 ----PMCAGALLHSRVKRVVFGA--PDLKAGAAGTVLNLFESQAAYHYALVEKGLLEDEC 130 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + L A+ R +R I K + G + GS G Sbjct: 131 RTQLQAFFKR---RRKEIKAKKQAQKALENGESEQGSRSSEG 169 >gi|261401120|ref|ZP_05987245.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970] gi|269208892|gb|EEZ75347.1| tRNA-specific adenosine deaminase [Neisseria lactamica ATCC 23970] Length = 239 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 2 PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F A FM AL ++ L P V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|325297264|ref|YP_004257181.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis DSM 18170] gi|324316817|gb|ADY34708.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides salanitronis DSM 18170] Length = 144 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 49/118 (41%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M A + W T V LIVKD ++I G Y G P Sbjct: 11 LDKRYMRMA---TIWAENSYCTRRKVGALIVKDKMIISDG---YNGTPAGFENVCEDENG 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 LTKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|293364019|ref|ZP_06610755.1| cytidine and deoxycytidylate deaminase zinc-binding region [Mycoplasma alligatoris A21JP2] gi|292552509|gb|EFF41283.1| cytidine and deoxycytidylate deaminase zinc-binding region [Mycoplasma alligatoris A21JP2] Length = 158 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 68/163 (41%), Gaps = 42/163 (25%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 ++D F+S A + S L S +PS AC+I + VIG G Y G P Sbjct: 6 NWDTYFISLA-KIS----ALRSKDPSTQVGACIINDEKKVIGLG---YNGMPNGNDIDFP 57 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAEV A+ A + +GA Y TL PC + CA+ I++ G Sbjct: 58 WGRDSKIAKETKYPYVVHAEVNAILNAIVQPKGAIIYTTLYPCIN------CAKVIVQSG 111 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 I+ VV D G ++L +K I R + + KI L Sbjct: 112 IKEVVFEDDKYKDTEDGEMARYLFEKCNIKTRKLTTSAKIILE 154 >gi|161869845|ref|YP_001599014.1| cytidine and deoxycytidylate deaminase family protein [Neisseria meningitidis 053442] gi|161595398|gb|ABX73058.1| cytidine and deoxycytidylate deaminase family protein [Neisseria meningitidis 053442] Length = 239 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F ++ FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPSQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|330957624|gb|EGH57884.1| cytosine deaminase [Pseudomonas syringae pv. maculicola str. ES4326] Length = 145 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 20/146 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGE 65 FM AA+ +R +GL + +IV DG +IGRG G P H E+ ALE AG Sbjct: 4 FMQAAIDEAR--LGLDEGGIPIGSVIVHDGKIIGRGHNRRVQEGSPTRHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + R A Y TL PC+ C+ I+ GIR V+V + + + L Sbjct: 62 QPASVYRDAVLYTTLSPCAM------CSGAILLYGIRTVIVGENQSFMGEE----ELLRS 111 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147 +G+ ++ + +E K + ++ + E Sbjct: 112 RGVSIEVLDNAECKDMMQGFIKSKPE 137 >gi|291562950|emb|CBL41766.1| Cytosine/adenosine deaminases [butyrate-producing bacterium SS3/4] Length = 186 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M + + +M A+R ++ L + C+IV DG +I RG HAE Sbjct: 7 MRKMTIEEHYMKEAIRQAKKAAALKEV--PIGCVIVYDGRIIARGYNRRTVDKNVLAHAE 64 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A G T YVTLEPC P CA I++ I +VV+ +P Sbjct: 65 IIAMRRACRILGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 118 Query: 112 SGRGLQWLSQKGI 124 +G L L + G Sbjct: 119 AGSVLDMLHEDGF 131 >gi|167038582|ref|YP_001666160.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038705|ref|YP_001661690.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514] gi|256751425|ref|ZP_05492303.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus CCSD1] gi|300913736|ref|ZP_07131053.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561] gi|307723248|ref|YP_003902999.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp. X513] gi|320116977|ref|YP_004187136.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852945|gb|ABY91354.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514] gi|166857416|gb|ABY95824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749644|gb|EEU62670.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus CCSD1] gi|300890421|gb|EFK85566.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561] gi|307580309|gb|ADN53708.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp. X513] gi|319930068|gb|ADV80753.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 148 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 66/148 (44%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 +FM AAL ++ L V +IVK+G +IGRG + HAE+ A++EA Sbjct: 4 KFMEAALLEAKKSYQLGEV--PVGAVIVKEGQIIGRGFNQKESTNDATAHAEIIAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL--- 116 + + YVTLEPC P CA I+E I+RV + + +G + Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGAESDKSGAAGTVVDIL 115 Query: 117 --QWLSQKGIIVDRMMESEGKIFLHAYL 142 +L K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|300214872|gb|ADJ79288.1| Cytosine/adenosine deaminase [Lactobacillus salivarius CECT 5713] Length = 166 Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 18/130 (13%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHA 55 MP++ +FM AL ++ + + C+IVKDG +IGRG + HA Sbjct: 1 MPLTDEQKVKFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 E+ A+EEA E +VTLEPC P C+ II I V DP Sbjct: 59 EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112 Query: 111 VSGRGLQWLS 120 G + L Sbjct: 113 TVGTLMNLLE 122 >gi|323499761|ref|ZP_08104720.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326] gi|323315002|gb|EGA68054.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326] Length = 179 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 63/135 (46%), Gaps = 20/135 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG +I G G HAE+Q L +AG E R T YVTLEPC Sbjct: 32 VGAVLVKDGEIIAEGWNQSIGQNDATAHAEIQTLRKAGQVLENYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII----VDR-MMESEGKI 136 P CA ++ ++R+V D +G L + V+R ++E+E + Sbjct: 90 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFEHQAAYHYADVERGLLETECRT 145 Query: 137 FLHAYLTRQVEKRSH 151 L A+ R+ +++ + Sbjct: 146 QLQAFFKRRRKEKKN 160 >gi|312142718|ref|YP_003994164.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903369|gb|ADQ13810.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 149 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 17/112 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 +FD ++M AL +R + ++V D V+GRG HAE+ AL Sbjct: 2 NFDQKYMQMALAEAR--KAYQRAEVPIGAVVVCDDRVVGRGFNLREQTQDPTSHAEIIAL 59 Query: 61 EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 +EA +E YVTLEPC P CA I++ I+R+V DP Sbjct: 60 KEAAKEQASWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYAAADP 105 >gi|311028951|ref|ZP_07707041.1| CMP/dCMP deaminase zinc-binding protein [Bacillus sp. m3-13] Length = 161 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 22/163 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D FM A+ ++ L + ++V DG VI +G T HAE+ +++ Sbjct: 3 DEHFMKLAIEEAKKAEALKEV--PIGAVLVHDGKVISKGYNLRETTQRSITHAEIMVIDQ 60 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A E + AT YVTLEPC P CA II+ I +VV DP +G + Sbjct: 61 ACEALQTWRLEEATLYVTLEPC------PMCAGAIIQSRIMKVVYGAKDPKAGCAGTLMN 114 Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 L + + +V +ME E L ++ + +++ L+ Sbjct: 115 ILQDSRFNHQTEVVSGIMEEECGELLSSFFRKLRQQKKEKKLR 157 >gi|229588606|ref|YP_002870725.1| putative deaminase [Pseudomonas fluorescens SBW25] gi|229360472|emb|CAY47329.1| putative deaminase [Pseudomonas fluorescens SBW25] Length = 166 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 43/155 (27%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL + L V ++V+DG +IGRG CP HAE Sbjct: 14 SRDQDFMREALVLAAQGAALGEV--PVGAVLVQDGEIIGRGFN----CPISGNDPSAHAE 67 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A + G+T YVTLEPCS CA I+ I RVV +P Sbjct: 68 MVAIRAAAQAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEP---- 117 Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146 + GI+ +S+G+ F +L +V Sbjct: 118 ---------KAGIV-----QSQGQFFTQGFLNHRV 138 >gi|289628393|ref|ZP_06461347.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 60 Score = 48.5 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 22/55 (40%), Positives = 32/55 (58%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV Sbjct: 6 AALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVH 60 >gi|260773318|ref|ZP_05882234.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP 69.14] gi|260612457|gb|EEX37660.1| tRNA-specific adenosine-34 deaminase [Vibrio metschnikovii CIP 69.14] Length = 165 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 20/132 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG VI G + + HAE+Q L +AG+ + T YVTLEPC Sbjct: 19 VGAVLVKDGQVIAEGWNRSIGGHDATAHAEIQVLRQAGQALQNYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ + R+V D +G L + + +I ++E + + Sbjct: 77 ----PMCAGALLHSRVARIVYGAPDLKAGAAGTVLNLFASQAAYHYAVIEKGLLEEQCRT 132 Query: 137 FLHAYLTRQVEK 148 L A+ R+ ++ Sbjct: 133 QLQAFFKRRRQE 144 >gi|325954402|ref|YP_004238062.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM 16922] gi|323437020|gb|ADX67484.1| CMP/dCMP deaminase zinc-binding protein [Weeksella virosa DSM 16922] Length = 143 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 36/147 (24%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR +R W V +IVKD +I G + G P Sbjct: 8 KYDKAYLRIAREWAKLSYCERKKVGAIIVKDRAIISDG---FNGSPSGFDNRCEDENGET 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + +GAT Y+TL PC C++ I + GI RVV D Sbjct: 65 KWYILHAEANAILKVAASTQSCKGATLYLTLSPCK------DCSKLIHQSGINRVVYMQD 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132 DV GL +L + G++++++ E Sbjct: 119 YKDV----EGLDFLHKAGVVIEQIPEE 141 >gi|312884996|ref|ZP_07744685.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367328|gb|EFP94891.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC BAA-2122] Length = 156 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 20/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V L+VKDG +I G ++ + HAE++ L +AG E R T YVTLEPC Sbjct: 19 VGALLVKDGEIIAEGWNRSISTHDATAHAEIEVLRKAGKILENYRLNDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ ++R+V D +G L + I ++E + + Sbjct: 77 ----PMCAGALLHSRVKRIVFGAFDKKTGAAGSVLNLFEHQAAYHYADIEKGVLEHQCRT 132 Query: 137 FLHAYLTRQVEKR 149 L ++ R+ E++ Sbjct: 133 QLQSFFKRRREEQ 145 >gi|325130078|gb|EGC52865.1| tRNA-specific adenosine deaminase [Neisseria meningitidis OX99.30304] gi|325138115|gb|EGC60688.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ES14902] gi|325142208|gb|EGC64629.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 961-5945] Length = 163 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 2 PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F A FM AL ++ L P V +IV DG +I +A+ C Sbjct: 6 PVAAFPPQGEMAHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKII---ASAHNTCIADC 60 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 61 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 115 AEPKTGAAGSIVNLFADK 132 >gi|210076069|ref|XP_505753.2| YALI0F22517p [Yarrowia lipolytica] gi|199424977|emb|CAG78564.2| YALI0F22517p [Yarrowia lipolytica] Length = 150 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 27/154 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTN----PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 DA++M+ A+ + S N P A L+ DG V+G+G + H E+ Sbjct: 5 DAKYMAMAIEQA-----TKSKNEGGIPIGAVLVAGDGTVLGKGHNRRIQHGSAVHHGEID 59 Query: 59 ALEEAGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 AL+ AG A + AT Y TL PC C I G++RVV+ +D V Sbjct: 60 ALQNAGRLAGKVYKDATMYTTLSPCD------MCTGACIMFGVKRVVMGENDTFV----G 109 Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148 G +L +GI V + E K + ++T E+ Sbjct: 110 GDDYLRARGIEVVNLKNDECKQLMDEFITAHPEE 143 >gi|160914820|ref|ZP_02077034.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991] gi|158433360|gb|EDP11649.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991] Length = 152 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 22/159 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 + +FM A++ ++ L P + C+IVKD +I RG + HAE+ A+E Sbjct: 1 MNEKFMVEAIKEAK-KAELIDEVP-IGCVIVKDDKIIARGHNLRESKQRSTAHAEIIAIE 58 Query: 62 EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + + G + YVTLEPC P C+ I++ I VV DP + Sbjct: 59 KACRKLKSWRLEGCSLYVTLEPC------PMCSGAILQSRIEHVVYGAKDPKGGCMESCM 112 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150 KG ++ ++E E L + R+ E++S Sbjct: 113 NMYEVKGFNHYPDVIGGVLEDECGSLLKTFFKRKREEKS 151 >gi|229826609|ref|ZP_04452678.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC 49176] gi|229789479|gb|EEP25593.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC 49176] Length = 167 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 22/168 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M A++ + L + C+IV DG +I RG T + HAE+ A+++ Sbjct: 4 DEKWMKEAIKQAEKAKKLDEV--PIGCVIVLDGKIIARGYNRRNTDHTSLAHAEMMAIKK 61 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ R T YVTLEPC CA I++ + RVV+ + +G Sbjct: 62 ACKKIRDWRLEKCTLYVTLEPCQM------CAGAIVQSRVERVVIGAMNKKAGCAGSIFN 115 Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 L + K +V ++E+E + + K+SH A SQ Sbjct: 116 LLEEDRFNHKAEVVRGVLENECSEMMSMFFKELRAKKSHAFCFDAASQ 163 >gi|254804815|ref|YP_003083036.1| probable cytidine deaminase [Neisseria meningitidis alpha14] gi|304387765|ref|ZP_07369945.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC 13091] gi|254668357|emb|CBA05413.1| probable cytidine deaminase [Neisseria meningitidis alpha14] gi|254671348|emb|CBA08775.1| putative hydrolase protein [Neisseria meningitidis alpha153] gi|304338241|gb|EFM04371.1| tRNA-specific adenosine deaminase [Neisseria meningitidis ATCC 13091] gi|319410268|emb|CBY90609.1| K01485 cytosine deaminase [Neisseria meningitidis WUE 2594] Length = 239 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|195952447|ref|YP_002120737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum sp. Y04AAS1] gi|195932059|gb|ACG56759.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum sp. Y04AAS1] Length = 222 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 72/148 (48%), Gaps = 7/148 (4%) Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +H +RA+ DAI+VG T+ D+P LT R ++ +P+R+I + D+ ++ Sbjct: 44 LHEVRAKVDAIMVGCETIRTDNPSLTVRY--VKGKNPIRVIPCSTANIPFDANVLSKD-- 99 Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A II T P + + I ++ D + LL L + + SL+VEGG+++ Sbjct: 100 AHTIIATTKRAPEEKIKKLTEMGIEVLVTGDYLVDFELLLKKLREKDIKSLMVEGGSSIN 159 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS 327 + V+ I + +++G +P+ Sbjct: 160 WELCKLKAVNEIRIIHLPVIVGGENVPT 187 >gi|298293688|ref|YP_003695627.1| bifunctional deaminase-reductase domain protein [Starkeya novella DSM 506] gi|296930199|gb|ADH91008.1| bifunctional deaminase-reductase domain protein [Starkeya novella DSM 506] Length = 241 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 9/174 (5%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + ++ S D I S I G + +H LRA +D ++VG+GTVLADDP+LT R Sbjct: 27 VIAQLGQSLDGRIATPTGKSRDINGCCGMDHLHRLRAIADVVVVGVGTVLADDPQLTTRR 86 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD--PVLALAFRKKNINIIY 269 + SP R ++DP + S S+ ++ I+ +EN P + I+ Sbjct: 87 --VPGRSPARAVIDPSGRSSRQSRWLREDGCR-RIVFSENAHGWPDEVERIGTDHDPAIF 143 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + +L+ L RG ++LVEGGA+ FI++ +VD + + S I++G G Sbjct: 144 ----EPARLIAALAARGHRTVLVEGGASTISRFIDAGVVDRLHVCLSPIILGSG 193 >gi|226309631|ref|YP_002769525.1| tRNA specific adenosine deaminase [Brevibacillus brevis NBRC 100599] gi|226092579|dbj|BAH41021.1| putative tRNA specific adenosine deaminase [Brevibacillus brevis NBRC 100599] Length = 160 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 17/121 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65 +M A+ +R + + +IV+DG ++GRG T HAE+ A+ EA E Sbjct: 10 YMKQAMEEARKAAAIGEV--PIGAVIVRDGEIVGRGYNLRETQKDPTLHAELIAIREASE 67 Query: 66 EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G T YVTLEPC P CA I++ I +VV DP +G + L+ Sbjct: 68 RLGGWRLIGCTLYVTLEPC------PMCAGAIVQSRIEKVVYGARDPKAGCAGTLMNLLA 121 Query: 121 Q 121 + Sbjct: 122 E 122 >gi|153837700|ref|ZP_01990367.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810] gi|260366298|ref|ZP_05778754.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030] gi|260876398|ref|ZP_05888753.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034] gi|308095607|ref|ZP_05907165.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus Peru-466] gi|308126068|ref|ZP_05907632.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037] gi|149748895|gb|EDM59726.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810] gi|308086905|gb|EFO36600.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus Peru-466] gi|308092990|gb|EFO42685.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034] gi|308106632|gb|EFO44172.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037] gi|308112714|gb|EFO50254.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030] Length = 174 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/165 (30%), Positives = 69/165 (41%), Gaps = 29/165 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL + L P V ++VKDG VI G + ++ HAE+Q L Sbjct: 10 DEIFMRRALALAE-QAELEGEVP-VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRN 67 Query: 63 AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL- 116 AG E R T YVTLEPC P CA ++ ++RVV PD++ G Sbjct: 68 AGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGA--PDLKAGAAGTV 119 Query: 117 ------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 Q + ++E E + L A+ R +R I K Sbjct: 120 LNLFESQAAYHYATVEKGLLEDECREQLQAFFKR---RRKEIKAK 161 >gi|293399195|ref|ZP_06643360.1| cytosine deaminase [Neisseria gonorrhoeae F62] gi|291610609|gb|EFF39719.1| cytosine deaminase [Neisseria gonorrhoeae F62] Length = 239 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 TEPKTGAAGSIVNLFADK 208 >gi|302552478|ref|ZP_07304820.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces viridochromogenes DSM 40736] gi|302470096|gb|EFL33189.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces viridochromogenes DSM 40736] Length = 189 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 13/186 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ L AVS D + G + ++ ++V +RA DAILVG GT+ AD+P L Sbjct: 5 YVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPRLLVN 64 Query: 211 ---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 GL E+ P+++ + L +++ T ++ T ++ A A Sbjct: 65 SPGRRAARTAAGLPEY-PLKVTVSGTGDLDPEARFWHTG--GEKVLYTTDEGAERARARG 121 Query: 262 KKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + D + LLT L RGV L+VEGG + + L D + L + + + Sbjct: 122 LATDVVPLGAGLDWRSLLTHLHDVRGVRRLMVEGGGLIHTQLLTQGLADELQLVLAPLFV 181 Query: 321 GEGGIP 326 G+ P Sbjct: 182 GDPAAP 187 >gi|94501251|ref|ZP_01307773.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp. RED65] gi|94426678|gb|EAT11664.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp. RED65] Length = 164 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 67/157 (42%), Gaps = 35/157 (22%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62 D FM+ A++ ++ L V ++V DG VIG G GC HAEV AL + Sbjct: 7 DEHFMALAIQQAKKADALNEV--PVGAVVVLDGEVIGEGYNQPISGCDPTAHAEVMALRQ 64 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + A YVT+EPC+ CA I+ IRR+V +P Sbjct: 65 AAKNVSNYRLVNADLYVTIEPCTM------CAGAIVHSRIRRLVYGATEP---------- 108 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 + G+I ES+ I +Y +VE S I L Sbjct: 109 ---KAGVI-----ESQQTILTQSYFNHRVEVVSGILL 137 >gi|15612596|ref|NP_240899.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125] gi|10172645|dbj|BAB03752.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125] Length = 159 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 20/135 (14%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKDG+V+ + HAE+ A+E+A + G T YVTLEPC Sbjct: 27 IGAVIVKDGVVVAKAYNLREINQQAIAHAELLAIEKACKALGTWRLTGCTLYVTLEPC-- 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 P CA I++ I RVV DP +G + L++ + I+ ++E E Sbjct: 85 ----PMCAGAIVQSRIERVVYGATDPKAGCAGTLMNLLNEERFNHQTIVESGVLEEECSQ 140 Query: 137 FLHAYLTRQVEKRSH 151 L A+ + E++ Sbjct: 141 RLTAFFRKLRERKKR 155 >gi|90962204|ref|YP_536120.1| cytosine/adenosine deaminase [Lactobacillus salivarius UCC118] gi|301300462|ref|ZP_07206662.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821398|gb|ABE00037.1| Cytosine/adenosine deaminase [Lactobacillus salivarius UCC118] gi|300851959|gb|EFK79643.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lactobacillus salivarius ACS-116-V-Col5a] Length = 166 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 17/121 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 +FM AL ++ + + C+IVKDG +IGRG + HAE+ A+EEA Sbjct: 10 KFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 67 Query: 65 EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E +VTLEPC P C+ II I V DP G + L Sbjct: 68 ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAGTVGTLMNLL 121 Query: 120 S 120 Sbjct: 122 E 122 >gi|82702354|ref|YP_411920.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Nitrosospira multiformis ATCC 25196] gi|82410419|gb|ABB74528.1| tRNA-adenosine deaminase [Nitrosospira multiformis ATCC 25196] Length = 163 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 30/166 (18%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------H 54 ++S DA FM AL S + V ++V++G ++GRG CP H Sbjct: 1 MNSSDAGFMHVALELSAQ--AEQAGEVPVGAIVVRNGTIVGRGYN----CPISTSDPTAH 54 Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AEV AL +AG T YVTLEPC+ C I I R+V DP Sbjct: 55 AEVMALRDAGRHLGNYRLGDCTLYVTLEPCAM------CMGAIFHARIARLVYGAADPKT 108 Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 G + L+ + ++ EG L + ++ E R+ Sbjct: 109 GACGSVINLSAELRLNHHLQVTRGVLAEEGGYKLKQFFAKRREART 154 >gi|239998824|ref|ZP_04718748.1| putative cytosine deaminase [Neisseria gonorrhoeae 35/02] gi|240014261|ref|ZP_04721174.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI18] gi|240016697|ref|ZP_04723237.1| putative cytosine deaminase [Neisseria gonorrhoeae FA6140] gi|240121824|ref|ZP_04734786.1| putative cytosine deaminase [Neisseria gonorrhoeae PID24-1] gi|260440688|ref|ZP_05794504.1| putative cytosine deaminase [Neisseria gonorrhoeae DGI2] gi|268594667|ref|ZP_06128834.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 35/02] gi|291043998|ref|ZP_06569714.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2] gi|268548056|gb|EEZ43474.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 35/02] gi|291012461|gb|EFE04450.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae DGI2] gi|317164113|gb|ADV07654.1| putative cytosine deaminase [Neisseria gonorrhoeae TCDC-NG08107] Length = 239 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|294102217|ref|YP_003554075.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] gi|293617197|gb|ADE57351.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] Length = 156 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 54/111 (48%), Gaps = 15/111 (13%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--HAEVQALE 61 S D FM+ AL +R VA L+V++ VIG+G + P HAE+ A+ Sbjct: 4 SDTDIFFMNMALDEAR--KAAEHGEVPVAALVVRNNEVIGKGSNSKHLDPTAHAEIIAIR 61 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 EA E RG+T YVTLEPC P CA I+ I+ +V DP Sbjct: 62 EATERLGTWNLRGSTLYVTLEPC------PMCAGAIVLSRIKCLVYGAADP 106 >gi|325928669|ref|ZP_08189845.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118] gi|325540965|gb|EGD12531.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118] Length = 171 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL+ + P A L+ G V+G G + ++ HAE+ Sbjct: 12 PYAAIDEHWMRHALQLAERAERDYDEIPVGALLVDAQGNVLGEGWNFNIASHDPSAHAEI 71 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 72 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 125 Query: 113 G 113 G Sbjct: 126 G 126 >gi|59801336|ref|YP_208048.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090] gi|194098422|ref|YP_002001481.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945] gi|240080887|ref|ZP_04725430.1| putative cytosine deaminase [Neisseria gonorrhoeae FA19] gi|240117796|ref|ZP_04731858.1| putative cytosine deaminase [Neisseria gonorrhoeae PID1] gi|240125599|ref|ZP_04738485.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-92-679] gi|268597004|ref|ZP_06131171.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19] gi|268603495|ref|ZP_06137662.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1] gi|268684187|ref|ZP_06151049.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae SK-92-679] gi|59718231|gb|AAW89636.1| putative cytosine deaminase [Neisseria gonorrhoeae FA 1090] gi|193933712|gb|ACF29536.1| putative cytosine deaminase [Neisseria gonorrhoeae NCCP11945] gi|268550792|gb|EEZ45811.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae FA19] gi|268587626|gb|EEZ52302.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID1] gi|268624471|gb|EEZ56871.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae SK-92-679] Length = 239 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKII---TSAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|262281785|ref|ZP_06059554.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA] gi|262262239|gb|EEY80936.1| cytidine/deoxycytidylate deaminase [Streptococcus sp. 2_1_36FAA] Length = 162 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ +R + L + + C+IV+DG +IGRG A HAE+ A+EEA + Sbjct: 18 FMLEALKEAR--IALENDEIPIGCVIVRDGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 75 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 76 HENSWRLLDTTLFVTIEPC 94 >gi|294625308|ref|ZP_06703945.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665062|ref|ZP_06730368.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600377|gb|EFF44477.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605180|gb|EFF48525.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 169 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL+ + P A L+ G V+G G + ++ HAE+ Sbjct: 10 PHAAIDVHWMQHALQLAERAERDYDEIPVGAVLVDAQGNVLGEGWNFNIASHDPSAHAEI 69 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 70 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123 Query: 113 G 113 G Sbjct: 124 G 124 >gi|240112750|ref|ZP_04727240.1| putative cytosine deaminase [Neisseria gonorrhoeae MS11] gi|240115501|ref|ZP_04729563.1| putative cytosine deaminase [Neisseria gonorrhoeae PID18] gi|240123350|ref|ZP_04736306.1| putative cytosine deaminase [Neisseria gonorrhoeae PID332] gi|240128054|ref|ZP_04740715.1| putative cytosine deaminase [Neisseria gonorrhoeae SK-93-1035] gi|254493609|ref|ZP_05106780.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291] gi|268598817|ref|ZP_06132984.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11] gi|268601174|ref|ZP_06135341.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID18] gi|268681975|ref|ZP_06148837.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID332] gi|268686443|ref|ZP_06153305.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae SK-93-1035] gi|226512649|gb|EEH61994.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae 1291] gi|268582948|gb|EEZ47624.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae MS11] gi|268585305|gb|EEZ49981.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID18] gi|268622259|gb|EEZ54659.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae PID332] gi|268626727|gb|EEZ59127.1| cytidine and deoxycytidylate deaminase [Neisseria gonorrhoeae SK-93-1035] Length = 239 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMGYFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|167464544|ref|ZP_02329633.1| possible nucleoside deaminase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 152 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + +IV +G +IGRG T+ HAE+ A+ EA E R T YVTLEPC Sbjct: 26 IGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREASEYLRAWRLLNCTLYVTLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ I RVV DP +G + L + Sbjct: 84 ----PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNLLQE 119 >gi|158314624|ref|YP_001507132.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec] gi|158110029|gb|ABW12226.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec] Length = 150 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 6/96 (6%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109 HAE AL + A AT Y TLEPCS P C Q I+E I RVV+ +P + Sbjct: 54 HAEESALAKIDPADPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSL 113 Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143 V+ +G + L+Q G+ V + E +E ++A+L+ Sbjct: 114 FVADCQGYELLTQAGVTVAELPELAEQARAMNAHLS 149 >gi|289208457|ref|YP_003460523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio sp. K90mix] gi|288944088|gb|ADC71787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio sp. K90mix] Length = 262 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 6/181 (3%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +E S ++ S D I S +TG +H LRA D ++VG GTV+ADDP Sbjct: 46 IEAESITVAQLGQSLDGRIATQSGHSQYVTGPEDIEHLHRLRALVDGVVVGAGTVVADDP 105 Query: 206 ELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 LT R G+ P+R+ILDP ++ ++++ + + +++ E P + Sbjct: 106 RLTVRKAEGVH---PVRVILDPDGRIQPNARVFQDGEVKTLVVHAEGHGPCDMPDNVECM 162 Query: 265 INIIYCDCRDLKKLL--TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + + D R L + G+ LLVEGG F+ S +D + L + ++IG Sbjct: 163 VMPVDADGRFAPPALRDRLAAEHGLHRLLVEGGGRTVSRFLASDTLDRLHLTIAPMLIGS 222 Query: 323 G 323 G Sbjct: 223 G 223 >gi|297543592|ref|YP_003675894.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841367|gb|ADH59883.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 148 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 +FM AA+ + L V +IVKD +IGRG HAE+ A++EA Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDATAHAEIMAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115 Query: 120 SQ-----KGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K+ L + Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143 >gi|86739889|ref|YP_480289.1| bifunctional deaminase-reductase-like protein [Frankia sp. CcI3] gi|86566751|gb|ABD10560.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3] Length = 283 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 38/230 (16%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 V R ++ A+S D I + + ++ ++V +RA DAILVG TV D+P Sbjct: 27 VAGRPYVICSCAMSLDGHIDDSSAERMILSSAADLDRVDEVRAGCDAILVGAATVRRDNP 86 Query: 206 ELTCRLN--------GLQEHSPMRIIL------DPHFKL----SLDSKIIKTALLAPVII 247 L R + +P++++L DP +L +++ I + A + I Sbjct: 87 RLAVRAQHRRVAREAAGRPPTPIKVVLSGGGDLDPSARLFTADPVETIIYRRAGSSLAIA 146 Query: 248 -VTENDDPV----------------LALAFRKKNINIIYCDCR---DLKKLLTILVGRGV 287 T + +P A A R + ++ R ++ +LT L RGV Sbjct: 147 EPTSSPEPTSSPEPSTPQSAPAAIRTAPATRAARVILVELPGRPRVEVAAILTDLARRGV 206 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 LLVEGG ++ +F+ + LVD + L + +GE P+ + G + Sbjct: 207 RRLLVEGGTSLHTAFLTAGLVDELHLTVAPFFVGERDAPTFVGPGVFPND 256 >gi|330936949|gb|EGH41059.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 169 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 43/155 (27%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL + L V ++V++G +IGRG CP HAE Sbjct: 10 SNDQYFMREALALASQGALLGEV--PVGAVVVQNGEIIGRGYN----CPISGSDPSAHAE 63 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +A + G+T YVTLEPCS CA I+ + RVV +P Sbjct: 64 MVAIRDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEP---- 113 Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146 + GI+ +S+G+ F A+L +V Sbjct: 114 ---------KAGIV-----QSQGQFFSQAFLNHRV 134 >gi|322383121|ref|ZP_08056948.1| tRNA specific adenosine deaminase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152783|gb|EFX45409.1| tRNA specific adenosine deaminase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 157 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/100 (36%), Positives = 48/100 (48%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + +IV +G +IGRG T+ HAE+ A+ EA E R T YVTLEPC Sbjct: 31 IGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREASEYLRAWRLLNCTLYVTLEPC-- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ I RVV DP +G + L + Sbjct: 89 ----PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNLLQE 124 >gi|325144274|gb|EGC66579.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M01-240013] Length = 239 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 54 ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|21242782|ref|NP_642364.1| hypothetical protein XAC2038 [Xanthomonas axonopodis pv. citri str. 306] gi|21108264|gb|AAM36900.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] Length = 169 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL+ + P A L+ G V+G G + ++ HAE+ Sbjct: 10 PHAAIDVHWMQHALQLAERAERDYDEIPVGAVLVDAQGNVLGEGWNFNIASHDPSAHAEI 69 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 70 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123 Query: 113 G 113 G Sbjct: 124 G 124 >gi|291549089|emb|CBL25351.1| Cytosine/adenosine deaminases [Ruminococcus torques L2-14] Length = 163 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 17/124 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D ++M AAL+ + L T + C+IV + +I RG T HAEV A+ Sbjct: 2 TTDEKYMRAALKQAEKAYNLGET--PIGCVIVHEDKIIARGYNRRNTDKNPLAHAEVAAI 59 Query: 61 EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ T YVTLEPC CA I++ I RVVV +P +G Sbjct: 60 KKASKKLGDWRLEECTLYVTLEPCQM------CAGAIVQSRIPRVVVGCMNPKAGCTGSI 113 Query: 116 LQWL 119 L L Sbjct: 114 LNLL 117 >gi|309792074|ref|ZP_07686548.1| deaminase-reductase domain-containing protein [Oscillochloris trichoides DG6] gi|308225881|gb|EFO79635.1| deaminase-reductase domain-containing protein [Oscillochloris trichoides DG6] Length = 286 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 79/199 (39%), Gaps = 26/199 (13%) Query: 149 RSHITLKIAVSQDNMI-----GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--- 200 R + VS D I G +G G V + L+RA++DAIL G GT+ Sbjct: 46 RPYTFTNFVVSHDGRISFAEPGRSGGGPVSRHSPYDTWLMGLIRARADAILTGAGTLQVA 105 Query: 201 ----------LADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTALLAPVIIV 248 A D L + +P+ +++ L D+ ++ PV+I Sbjct: 106 RRHLWTPTQAFASDAHFFADLRMAEGRTPLPLLVVVTNRGDLPPDAAALR-GDPQPVLIA 164 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303 T A A + + Y R DL L L R GV SLL EGGA + + + Sbjct: 165 TTPAGATRAYAHLGERPGVRYHISRGETVDLIGLCADLRQRMGVRSLLSEGGALIYGALV 224 Query: 304 NSRLVDSIILYRSQIVIGE 322 RLVD L S I+IG Sbjct: 225 AQRLVDETFLTNSPIIIGS 243 >gi|261212078|ref|ZP_05926364.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341] gi|260838686|gb|EEX65337.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341] Length = 170 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/172 (25%), Positives = 71/172 (41%), Gaps = 28/172 (16%) Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53 MP S F D +FM A+ + V ++V+DG +I G +T + Sbjct: 1 MPESQFSPQDEQFMRRAITLAAQ--AEAQGEVPVGAVLVRDGEIIAEGWNCSITHHDATA 58 Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE++ + +AG T YVTLEPC P CA ++ ++R+V D Sbjct: 59 HAEIEVIRKAGNVLNNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLK 112 Query: 109 VRVSGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 +G + S + + ++E E + L A+ R +R I K Sbjct: 113 AGAAGTVMDLFSSQAAYHYATVEKGLLEEECRTQLQAFFQR---RRKEIKAK 161 >gi|308389629|gb|ADO31949.1| cytidine and deoxycytidylate deaminase family protein [Neisseria meningitidis alpha710] Length = 239 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 54 ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|34498926|ref|NP_903141.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472] gi|34104775|gb|AAQ61132.1| probable cytidine deaminase [Chromobacterium violaceum ATCC 12472] Length = 244 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V L+VKDG +IGRG + + HAE+QAL +A R G YVTLEPC Sbjct: 115 VGALVVKDGEIIGRGYNQPIGRHDPSAHAEMQALRDAAARLRNYRLDGCDLYVTLEPC-- 172 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C+ I+ + RV+ D +G Sbjct: 173 ----PMCSGAILHARVARVIYGAADAKTGAAG 200 >gi|319946112|ref|ZP_08020360.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC 700641] gi|319747758|gb|EFW00004.1| tRNA-specific adenosine deaminase [Streptococcus australis ATCC 700641] Length = 170 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C+IVKDG +IGRG A HAEV A+EEA + Sbjct: 12 FMREALKEA--EIALAHEEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEVMAIEEANQ 69 Query: 66 EARG-----ATAYVTLEPC 79 + + T +VT+EPC Sbjct: 70 KEKSWRLLDTTLFVTIEPC 88 >gi|6572098|emb|CAB63082.1| riboflavin-specific deaminase [Bartonella bacilliformis] Length = 107 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 +L +L G+ S+L+EGGA F+N+ VD +I + + +++GE I +P E YL + Sbjct: 22 ILQLLCQLGINSVLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE- 80 Query: 338 FMCVRRDYFGSDVCLEYIGKNLCLQEL 364 F + +D + K LC Q L Sbjct: 81 FNEIETKMLENDRLRRWRRKILCSQGL 107 >gi|70732252|ref|YP_262008.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas fluorescens Pf-5] gi|68346551|gb|AAY94157.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas fluorescens Pf-5] Length = 162 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 57/129 (44%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGEEAR-----GATAYVTLE 77 V ++V DG VIGRG CP HAE+ A+ EA + G+T YVTLE Sbjct: 37 VGAVLVLDGQVIGRGYN----CPISGSDPSAHAEMVAIREAAQAVSNYRLPGSTLYVTLE 92 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ I RVV +P + GI+ +S+G+ F Sbjct: 93 PCSM------CAGLIVHSRIARVVYGALEP-------------KAGIV-----QSQGQFF 128 Query: 138 LHAYLTRQV 146 +L +V Sbjct: 129 TQGFLNHRV 137 >gi|325479006|gb|EGC82107.1| cytidine and deoxycytidylate deaminase zinc-binding region [Anaerococcus prevotii ACS-065-V-Col13] Length = 169 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CPHAEVQA 59 S D FM A+ +R P V +IV G +IGRG Y G HAE+ A Sbjct: 13 SKMDMFFMQEAISEARL-ARFVEEVP-VGAVIVYKGEIIGRGHNYTYKGKSALKHAEIMA 70 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 ++EA E T YVT+EPCS CA II I R+V+ + DP Sbjct: 71 IKEASEYMDDFRLEECTMYVTMEPCSM------CAGAIINSRIDRLVIGIRDP 117 >gi|325128107|gb|EGC51002.1| tRNA-specific adenosine deaminase [Neisseria meningitidis N1568] Length = 163 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F ++ FM ALR + V +IV DG +I +A+ C Sbjct: 6 PVAAFPSQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 60 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 61 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 115 AEPKTGAAGSIVNLFADK 132 >gi|289665842|ref|ZP_06487423.1| hypothetical protein XcampvN_22891 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 174 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P S+ D +M AL + P A ++ +G V+G G + ++ HAE+ Sbjct: 15 PHSAIDLHWMQHALHLAERAERDYDEIPVGALVVDAEGNVLGEGWNFNIASHDPSAHAEI 74 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 75 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 128 Query: 113 G 113 G Sbjct: 129 G 129 >gi|288803361|ref|ZP_06408794.1| cytidine/deoxycytidylate deaminase family protein [Prevotella melaninogenica D18] gi|288334181|gb|EFC72623.1| cytidine/deoxycytidylate deaminase family protein [Prevotella melaninogenica D18] Length = 166 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/154 (29%), Positives = 66/154 (42%), Gaps = 40/154 (25%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 ++ D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 22 AAVDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICED 74 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L +G + G+T YVT PC CA+ II+ GIRRV Sbjct: 75 ESGVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRV 128 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 V R++ G+ L++ G+ V+ + +G Sbjct: 129 VYA---EKYRLTD-GIDLLTRAGVEVEYISLEDG 158 >gi|240145078|ref|ZP_04743679.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82] gi|257202749|gb|EEV01034.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82] gi|291537828|emb|CBL10939.1| Cytosine/adenosine deaminases [Roseburia intestinalis XB6B4] Length = 154 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M AA+R ++ L + C+IV++ +I RG T HAE+ A+ + Sbjct: 4 DEKYMKAAIRQAKKAYALDEV--PIGCVIVQNDKIIARGYNRRNTEGNTLAHAELTAIRK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC CA I++ +++VV+ +P +G L Sbjct: 62 ASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSVLN 115 Query: 118 WLS 120 L Sbjct: 116 LLQ 118 >gi|251794142|ref|YP_003008873.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2] gi|247541768|gb|ACS98786.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2] Length = 156 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 17/101 (16%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGA------TAYVTLEPCS 80 + ++VK+G V+GRG T + HAE+ A+ EA E GA T YVTLEPC Sbjct: 29 IGAILVKNGEVVGRGYNLRETNHDPTAHAEMVAIREACERL-GAWRLLDCTLYVTLEPC- 86 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ ++RVV DP +G + L + Sbjct: 87 -----PMCAGAIVQSRVKRVVYGTGDPKAGCAGTLMNLLQE 122 >gi|197335350|ref|YP_002155408.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11] gi|197316840|gb|ACH66287.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11] Length = 174 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IV D +IG G ++ + HAE+ A+++AG + AT YVTLEPC Sbjct: 32 VGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQAGSKIENYRLVDATLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I+ I+RV+ D SG Sbjct: 90 ----PMCAGAIVHSRIKRVIFGASDMKTGASG 117 >gi|166710619|ref|ZP_02241826.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 80 Score = 47.8 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 30/53 (56%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PH E Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHTE 61 >gi|289669069|ref|ZP_06490144.1| hypothetical protein XcampmN_11383 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 174 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P S+ D +M AL + P A ++ +G V+G G + ++ HAE+ Sbjct: 15 PHSAIDLHWMQHALHLAERAERDYDEIPVGALVVDAEGNVLGEGWNFNIASHDPSAHAEI 74 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 75 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 128 Query: 113 G 113 G Sbjct: 129 G 129 >gi|86740847|ref|YP_481247.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3] gi|86567709|gb|ABD11518.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3] Length = 150 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 6/96 (6%) Query: 54 HAEVQALEEAGE-EARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109 HAE AL + G + R ATA Y TLEPCS P C Q I+E I RVV+ +P + Sbjct: 54 HAEESALAKIGPGDPRLATATIYSTLEPCSQRKSRPRTCTQLILEAKIPRVVIAWREPSL 113 Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143 V+ +G + L+Q G+ V + E E ++A+L+ Sbjct: 114 FVADCQGYELLTQAGVTVVELPELGEQARAMNAHLS 149 >gi|196229635|ref|ZP_03128499.1| bifunctional deaminase-reductase domain protein [Chthoniobacter flavus Ellin428] gi|196225961|gb|EDY20467.1| bifunctional deaminase-reductase domain protein [Chthoniobacter flavus Ellin428] Length = 234 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 14/185 (7%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD----- 203 R +T A++ D I T K ++ +RA+ DAIL G T+ D Sbjct: 7 RPFVTSNFAMTWDGRISTRRSTPANFTSPKDKRRLVEIRAECDAILAGAKTIATDNMTMG 66 Query: 204 --DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL---A 257 DP L T R+ Q P+R++L ++ ++ ++ +P+II + P A Sbjct: 67 LPDPALRTARVKRGQSAYPLRVLLTNSGRIDPALRVFESTF-SPIIIFSTTRMPARVQSA 125 Query: 258 LAFRKKNINIIYCDCRDLKKLL-TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 LA K ++ + +L +L T+ GV L+ EGGA + + +++ L+D I L + Sbjct: 126 LAG-KADLWLHEGPAVNLAGMLATLRADYGVKRLVCEGGAQIFRALLSAGLIDEIHLTLA 184 Query: 317 QIVIG 321 + G Sbjct: 185 PKIFG 189 >gi|254672230|emb|CBA05187.1| putative hydrolase protein [Neisseria meningitidis alpha275] Length = 197 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 40 PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 94 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 95 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 148 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 149 AEPKTGAAGSIVNLFADK 166 >gi|28198227|ref|NP_778541.1| cytosine deaminase [Xylella fastidiosa Temecula1] gi|170729545|ref|YP_001774978.1| cytosine deaminase [Xylella fastidiosa M12] gi|182680863|ref|YP_001829023.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23] gi|28056297|gb|AAO28190.1| cytosine deaminase [Xylella fastidiosa Temecula1] gi|167964338|gb|ACA11348.1| cytosine deaminase [Xylella fastidiosa M12] gi|182630973|gb|ACB91749.1| CMP/dCMP deaminase zinc-binding [Xylella fastidiosa M23] Length = 165 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 52/128 (40%), Gaps = 15/128 (11%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 PV +M AL + P A LI +G ++G G +T++ HAE+ Sbjct: 6 PVLPEHTHWMRHALTLAHRAATEFDEIPVGAVLISPEGTLLGEGCNYNITSHDPSAHAEI 65 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL AG + R G T YVTLEPC CA II I ++ DP Sbjct: 66 MALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAAADPKTGAC 119 Query: 113 GRGLQWLS 120 G L+ Sbjct: 120 GSTFDILN 127 >gi|78047755|ref|YP_363930.1| putative cytidine / deoxycytidylate deaminase family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78036185|emb|CAJ23876.1| putative cytidine / deoxycytidylate deaminase family protein [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 169 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL+ + P A L+ G V+G G + ++ HAE+ Sbjct: 10 PHAAIDEHWMRHALQLAERAERDYDEIPVGALLVDAQGNVLGEGWNFNIASHDPSAHAEI 69 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 70 VAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 123 Query: 113 G 113 G Sbjct: 124 G 124 >gi|257094052|ref|YP_003167693.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046576|gb|ACV35764.1| CMP/dCMP deaminase zinc-binding [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 153 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D FM AL ++ L V L+V+DG+++GRG + G HAE+ AL + Sbjct: 3 DEYFMREALSLAQAAECLGEV--PVGALVVRDGVIVGRGFNSPIGEHDPTAHAEIAALRD 60 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A R G +VTLEPC+ CA +++ + R+V DP V G Sbjct: 61 AARTLRNYRLPGCELFVTLEPCAM------CAGAMLQARLARLVYGARDPKTGVHG 110 >gi|297539076|ref|YP_003674845.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301] gi|297258423|gb|ADI30268.1| CMP/dCMP deaminase zinc-binding protein [Methylotenera sp. 301] Length = 162 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVKDG+VIGRG + + HAE+ AL +A + G + YVTLEPC+ Sbjct: 36 VGAIIVKDGVVIGRGGNSPIDTHDPTAHAEIAALRDAAKNLGNYRLVGCSLYVTLEPCAM 95 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 C I I R+V +DP G + +++ Sbjct: 96 ------CTGAIQHARIARLVYGANDPKTGACGSVVNLMAE 129 >gi|254786582|ref|YP_003074011.1| cytidine and deoxycytidylate deaminase family protein [Teredinibacter turnerae T7901] gi|237687430|gb|ACR14694.1| cytidine and deoxycytidylate deaminase family protein [Teredinibacter turnerae T7901] Length = 164 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 57/125 (45%), Gaps = 17/125 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCP---HAEVQALEE 62 D +M+ AL +R V ++V+DG +IGRG G C HAE+ AL + Sbjct: 5 DEHWMTEALVLAR--EAAAQGEVPVGAVLVQDGAIIGRGSNNPIGSCDASGHAEICALRD 62 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ + AT YVT+EPC+ C I+ I RVV +P V + Sbjct: 63 AGQRQKNYRLPNATLYVTIEPCTM------CLGAIVHARIARVVFGAPEPKAGVLESNPE 116 Query: 118 WLSQK 122 LS K Sbjct: 117 LLSAK 121 >gi|332800033|ref|YP_004461532.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1] gi|332697768|gb|AEE92225.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1] Length = 138 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 55/129 (42%), Gaps = 39/129 (30%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP-------- 53 +D F+ A + V ST P V ++VKD + G T Y G P Sbjct: 3 KDWDKYFLEIAFK-----VRERSTCPRLQVGAVVVKDNRIKG---TGYNGSPSGMDHCDD 54 Query: 54 --------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAEV AL E EE +GAT YVT PC+ C++ II GI+ Sbjct: 55 VGCMIRGNHCVRTIHAEVNALLECSPEERKGATIYVTARPCAE------CSKLIINSGIK 108 Query: 99 RVVVCVDDP 107 RVV ++ P Sbjct: 109 RVVYAIEYP 117 >gi|309380104|emb|CBX21515.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 239 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM AL ++ L P V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQGEMEHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|302345385|ref|YP_003813738.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC 25845] gi|302149570|gb|ADK95832.1| dCMP deaminase family protein [Prevotella melaninogenica ATCC 25845] Length = 166 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 63/147 (42%), Gaps = 40/147 (27%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 ++ D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 22 AAVDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICED 74 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L +G + G+T YVT PC CA+ II+ GIRRV Sbjct: 75 ESGVTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIRRV 128 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVD 127 V R++ G+ L++ G+ V+ Sbjct: 129 VYA---EKYRLTD-GIDLLTRAGVEVE 151 >gi|300113226|ref|YP_003759801.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii C-113] gi|299539163|gb|ADJ27480.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus watsonii C-113] Length = 188 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 27/152 (17%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------- 53 P D +M AL +R+ + V ++V++ ++G G CP Sbjct: 38 PPGEKDIPWMYHALALARY--AEETGEVPVGAVVVQEDEIVGEGWN----CPINSRDPTA 91 Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+QA+ A ++ G T YVTLEPC+ CA II+ IRRVV DP Sbjct: 92 HAEIQAIRAASQQLGNYRLVGTTLYVTLEPCAM------CAGAIIQARIRRVVFGAFDPK 145 Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 G L L G ++ +E +G + A Sbjct: 146 GGAVGSALSIL--PGERLNHQVECQGGVLAEA 175 >gi|28897437|ref|NP_797042.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633] gi|28805649|dbj|BAC58926.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633] Length = 161 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG VI G + ++ HAE+Q L AG E R T YVTLEPC Sbjct: 19 VGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRNAGAVLENYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++RVV D +G L + + ++E E + Sbjct: 77 ----PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFESQAAYHYATVEKGLLEDECRE 132 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 133 QLQAFFKR---RRKEIKAK 148 >gi|59711257|ref|YP_204033.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114] gi|59479358|gb|AAW85145.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114] Length = 171 Score = 47.4 bits (111), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IV D +IG G ++ + HAE+ A+++AG + AT YVTLEPC Sbjct: 32 VGAVIVLDDEIIGEGWNRSISTHDATAHAEMMAIKQAGSKIENYRLVDATLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I+ I+RV+ D SG Sbjct: 90 ----PMCAGAIVHSRIKRVIFGASDMKTGASG 117 >gi|330955311|gb|EGH55571.1| cytosine deaminase [Pseudomonas syringae Cit 7] Length = 145 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 64/146 (43%), Gaps = 20/146 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA F +GL + +IV G +IGRG V H E+ ALE AG Sbjct: 4 FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + R + Y TL PC+ C+ I+ GIR+V++ ++ + L Sbjct: 62 QPASVYRNSVLYTTLSPCAM------CSGAILLYGIRKVIIGENESFMGEE----DLLRS 111 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147 +G+ +D + + K + ++ + E Sbjct: 112 RGVQIDVLDNHDCKHMMQGFIASKPE 137 >gi|303237263|ref|ZP_07323833.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella disiens FB035-09AN] gi|302482650|gb|EFL45675.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella disiens FB035-09AN] Length = 148 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 9 LDYRY----LRMARVWSENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENICEDND 61 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L +G + G+T YVT PC CA+ II+ GI+RVV Sbjct: 62 GLTKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQSGIKRVV 114 >gi|198275609|ref|ZP_03208140.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135] gi|198271238|gb|EDY95508.1| hypothetical protein BACPLE_01778 [Bacteroides plebeius DSM 17135] Length = 144 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M AL W V LIVKD ++I G Y G P Sbjct: 11 LDKRYMRMALI---WAENSYCQRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDENG 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTRPYVLHAEANAITKIARSSNSSEGATMYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|72161281|ref|YP_288938.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] gi|71915013|gb|AAZ54915.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] Length = 153 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGC-PHAEVQALEE-A 63 D R + A+ SR +ST SV LIV DG V+ G + HAE AL A Sbjct: 8 DLRLLRTAVDLSR-SCPPSSTAFSVGALIVAADGTVLADGYSRRDDPHDHAEEVALRAVA 66 Query: 64 GEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E+ R AT Y +LEPCS P C I++ I R+V +P++ V RG + L Sbjct: 67 AEDPRLAAATLYSSLEPCSTRASRPRSCTSLILDTPIPRIVFAWREPELFVDCRGAELLR 126 Query: 121 QKG 123 G Sbjct: 127 AAG 129 >gi|261392718|emb|CAX50291.1| tRNA-specific adenosine deaminase [Neisseria meningitidis 8013] Length = 239 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|53712256|ref|YP_098248.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46] gi|60680433|ref|YP_210577.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343] gi|253563708|ref|ZP_04841165.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5] gi|265762444|ref|ZP_06091012.1| ComE operon protein 2 [Bacteroides sp. 2_1_16] gi|52215121|dbj|BAD47714.1| deoxycytidylate deaminase [Bacteroides fragilis YCH46] gi|60491867|emb|CAH06625.1| putative deoxycytidylate deaminase [Bacteroides fragilis NCTC 9343] gi|251947484|gb|EES87766.1| deoxycytidylate deaminase [Bacteroides sp. 3_2_5] gi|263255052|gb|EEZ26398.1| ComE operon protein 2 [Bacteroides sp. 2_1_16] gi|301161966|emb|CBW21510.1| putative deoxycytidylate deaminase [Bacteroides fragilis 638R] Length = 145 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S D R++ A S W V LIVKD ++I G Y G P Sbjct: 9 SDLDKRYIRMA---SIWSENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDD 62 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 63 NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPC------IECAKLIIQAGIKRVV 116 >gi|91776192|ref|YP_545948.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT] gi|91710179|gb|ABE50107.1| tRNA-adenosine deaminase [Methylobacillus flagellatus KT] Length = 168 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/174 (28%), Positives = 75/174 (43%), Gaps = 36/174 (20%) Query: 1 MPVS-----SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGG 51 MP S + D FM AL+ ++ L P V ++VKDG+VIGRG A + Sbjct: 1 MPASQEENTAADEDFMRIALQLAQ-EAALAGEVP-VGAVVVKDGVVIGRGSNAPIAYHDP 58 Query: 52 CPHAEVQALEEAGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE++A+ +A AR G YVTLEPC+ CA I I R+V Sbjct: 59 SAHAEIRAMRDAA--ARLGNYRLTGCALYVTLEPCAM------CAGAIQHARIARLVFGA 110 Query: 105 DDPDVRVSGRGLQWLSQK----------GIIVDRMMESEGKIFLHAYLTRQVEK 148 D G + ++++ G++V + + F ++VEK Sbjct: 111 HDYKTGACGSVIDLMAEERLNHHTLVKSGVLVQECSATLTQFFAERRRQQKVEK 164 >gi|15640880|ref|NP_230511.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585742|ref|ZP_01675537.1| zinc-binding domain protein [Vibrio cholerae 2740-80] gi|121728321|ref|ZP_01681351.1| zinc-binding domain protein [Vibrio cholerae V52] gi|147675155|ref|YP_001216345.1| zinc-binding domain-containing protein [Vibrio cholerae O395] gi|153802057|ref|ZP_01956643.1| zinc-binding domain protein [Vibrio cholerae MZO-3] gi|153819008|ref|ZP_01971675.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457] gi|153823068|ref|ZP_01975735.1| zinc-binding domain protein [Vibrio cholerae B33] gi|227081040|ref|YP_002809591.1| yfhC protein [Vibrio cholerae M66-2] gi|229505525|ref|ZP_04395035.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286] gi|229510804|ref|ZP_04400283.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33] gi|229517925|ref|ZP_04407369.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9] gi|229608545|ref|YP_002879193.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236] gi|254848002|ref|ZP_05237352.1| zinc-binding domain-containing protein [Vibrio cholerae MO10] gi|298499008|ref|ZP_07008815.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757] gi|9655317|gb|AAF94026.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550105|gb|EAX60121.1| zinc-binding domain protein [Vibrio cholerae 2740-80] gi|121629376|gb|EAX61806.1| zinc-binding domain protein [Vibrio cholerae V52] gi|124122416|gb|EAY41159.1| zinc-binding domain protein [Vibrio cholerae MZO-3] gi|126510441|gb|EAZ73035.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457] gi|126519394|gb|EAZ76617.1| zinc-binding domain protein [Vibrio cholerae B33] gi|146317038|gb|ABQ21577.1| zinc-binding domain protein [Vibrio cholerae O395] gi|227008928|gb|ACP05140.1| yfhC protein [Vibrio cholerae M66-2] gi|227012684|gb|ACP08894.1| yfhC protein [Vibrio cholerae O395] gi|229344640|gb|EEO09614.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9] gi|229350769|gb|EEO15710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33] gi|229357748|gb|EEO22665.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286] gi|229371200|gb|ACQ61623.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236] gi|254843707|gb|EET22121.1| zinc-binding domain-containing protein [Vibrio cholerae MO10] gi|297543341|gb|EFH79391.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757] Length = 193 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L A+ R +R I K + N Sbjct: 164 QLQAFFQR---RRKEIKAKRDAERKN 186 >gi|289577296|ref|YP_003475923.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter italicus Ab9] gi|289527009|gb|ADD01361.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter italicus Ab9] Length = 148 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64 +FM AA+ + L V +IVKD +IGRG HAE+ A++EA Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDVTAHAEIMAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSIYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115 Query: 120 SQ-----KGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K+ L + Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143 >gi|153824574|ref|ZP_01977241.1| zinc-binding domain protein [Vibrio cholerae MZO-2] gi|149741792|gb|EDM55821.1| zinc-binding domain protein [Vibrio cholerae MZO-2] Length = 193 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G L S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|238917935|ref|YP_002931452.1| hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750] gi|238873295|gb|ACR73005.1| Hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750] Length = 176 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D R+M A+ ++ L + C+IV +G VIGRG T HAE+ A+++ Sbjct: 17 DYRYMKQAITQAKKAYKLNEV--PIGCVIVYEGKVIGRGYNRRNTDKTSLGHAEITAIKK 74 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A T YVTLEPC CA I++ I RVV+ +P +G L Sbjct: 75 ASRYMNDWRLENCTLYVTLEPCQM------CAGAIVQARIPRVVIGSMNPKAGCAGSILN 128 Query: 118 WLS 120 L Sbjct: 129 ILQ 131 >gi|45659030|ref|YP_003116.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602276|gb|AAS71753.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 222 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 91/184 (49%), Gaps = 14/184 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP + R Sbjct: 6 NVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLR 65 Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--- 266 ++ +Q+ P +IL + D K+ + + + P+I + + ++ ++N++ Sbjct: 66 YVDNVQDPRP--VILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLI-----QENLSSCA 118 Query: 267 -IIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I+ DL K L +L G +L+EGG ++ SF LV I L +IG+ Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178 Query: 324 GIPS 327 +PS Sbjct: 179 DLPS 182 >gi|229530028|ref|ZP_04419418.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)] gi|229333802|gb|EEN99288.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae 12129(1)] Length = 193 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G L S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|24216718|ref|NP_714199.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Lai str. 56601] gi|24198069|gb|AAN51217.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Lai str. 56601] Length = 222 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/184 (21%), Positives = 91/184 (49%), Gaps = 14/184 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP + R Sbjct: 6 NVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDPVVHLR 65 Query: 211 -LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN--- 266 ++ +Q+ P +IL + D K+ + + + P+I + + ++ ++N++ Sbjct: 66 YVDNVQDPRP--VILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLI-----QENLSSCA 118 Query: 267 -IIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I+ DL L L +L G +L+EGG ++ SF LV I L +IG+ Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178 Query: 324 GIPS 327 +PS Sbjct: 179 DLPS 182 >gi|325207969|gb|ADZ03421.1| putative tRNA-specific adenosine deaminase [Neisseria meningitidis NZ-05/33] Length = 148 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 23/127 (18%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------PHAEVQAL 60 A FM AL ++ L P V +IV DG +I +A+ C HAE+ AL Sbjct: 2 AHFMGLALEQAKLSA-LMGEIP-VGAVIVSDGKII---ASAHNTCIADCNVSRHAEINAL 56 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +AG E + G Y+TLEPC+ CA +I+ IRRV+ +P +G Sbjct: 57 AQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGAAEPKTGAAGSI 110 Query: 116 LQWLSQK 122 + + K Sbjct: 111 VNLFADK 117 >gi|15837614|ref|NP_298302.1| hypothetical protein XF1012 [Xylella fastidiosa 9a5c] gi|9105950|gb|AAF83822.1|AE003939_1 conserved hypothetical protein [Xylella fastidiosa 9a5c] Length = 167 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79 P A LI +G ++G G +T++ HAE+ AL AG + R G T YVTLEPC Sbjct: 35 PVGAVLISPEGTLLGEGWNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 94 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA II I ++ DP G Sbjct: 95 L------MCAMAIIHARIAHLIYAAADPKTGACG 122 >gi|255744661|ref|ZP_05418612.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101] gi|262161205|ref|ZP_06030316.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1] gi|262168710|ref|ZP_06036405.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27] gi|255737692|gb|EET93086.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101] gi|262022828|gb|EEY41534.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27] gi|262028955|gb|EEY47608.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1] Length = 175 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 32 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 90 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 145 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L A+ R +R I K + N Sbjct: 146 QLQAFFQR---RRKEIKAKRDAERKN 168 >gi|307579329|gb|ADN63298.1| CMP/dCMP deaminase zinc-binding protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 151 Score = 47.0 bits (110), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79 P A LI +G ++G G +T++ HAE+ AL AG + R G T YVTLEPC Sbjct: 19 PVGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 78 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 CA II I ++ DP G L+ Sbjct: 79 LM------CAMAIIHARIAHLIYAAADPKTGACGSTFDILN 113 >gi|167628994|ref|YP_001679493.1| come operon protein 2 [Heliobacterium modesticaldum Ice1] gi|167591734|gb|ABZ83482.1| come operon protein 2 [Heliobacterium modesticaldum Ice1] Length = 146 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 54/125 (43%), Gaps = 39/125 (31%) Query: 6 FDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP---------- 53 +D+ F+ A V ST P SV +IVKD + G T Y G P Sbjct: 5 WDSYFIDIAFA-----VSSRSTCPRRSVGAVIVKDKRIKG---TGYNGSPAGLPHCTDAG 56 Query: 54 ------------HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAEV A+ E EE +GAT YVT PC+ CA+ II GIRRV Sbjct: 57 CCMWNNHCVRTIHAEVNAIMECSPEERKGATIYVTDRPCAE------CAKVIISSGIRRV 110 Query: 101 VVCVD 105 V D Sbjct: 111 VFARD 115 >gi|325204006|gb|ADY99459.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M01-240355] Length = 239 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|283796876|ref|ZP_06346029.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1] gi|291075284|gb|EFE12648.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1] Length = 215 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D R+M A+R ++ W +G + C+IV G +IGRG T HAE+ A+ Sbjct: 43 DERYMREAVRQAKKAWALGEVP----IGCVIVHRGKIIGRGYNRRTTDGNVLAHAEILAI 98 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A T YVTLEPC P CA I++ I +VV+ +P +G Sbjct: 99 RKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 152 Query: 116 LQWLSQKGI 124 L L ++G Sbjct: 153 LDLLHEEGF 161 >gi|229523332|ref|ZP_04412739.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80] gi|229339695|gb|EEO04710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TM 11079-80] Length = 177 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 34 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 91 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G L S + + ++E E + Sbjct: 92 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 147 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 148 QLQAFFQR---RRKEIKAK 163 >gi|294672973|ref|YP_003573589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Prevotella ruminicola 23] gi|294474140|gb|ADE83529.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Prevotella ruminicola 23] Length = 145 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 49/121 (40%), Gaps = 36/121 (29%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 S D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 9 SKLDVRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 61 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L + + GAT Y+T PC CA+ II+ GI+RV Sbjct: 62 DDNVTKPYVLHAEANAITKLARSNNNSDGATIYITASPCIE------CAKLIIQAGIKRV 115 Query: 101 V 101 V Sbjct: 116 V 116 >gi|158317044|ref|YP_001509552.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec] gi|158112449|gb|ABW14646.1| bifunctional deaminase-reductase domain protein [Frankia sp. EAN1pec] Length = 252 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 85/212 (40%), Gaps = 33/212 (15%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A+S D I + ++ ++V +RA DAILVG T+ D+P L Sbjct: 4 RPYVLLSCAMSLDGRIDDCSPQRLVLSSQADLDRVDEVRAGCDAILVGARTLRRDNPGLA 63 Query: 209 CRLNGLQEH--------SPMRIIL------DPHFKLSLDSK---IIKTALLAP------- 244 R + +P+R +L DP + LD + + A AP Sbjct: 64 VRSERRRAERTAAGRPATPLRAVLTSGGRLDPDARFFLDGAEKVVYRFAGAAPRPAPESG 123 Query: 245 --------VIIVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 T P A+ + ++ + L+ LL L RG LLVEGG Sbjct: 124 PGAGAGAGAGAGTGTGSPAPAVPPDLSAVATVVDLEAPPLEHLLDDLSRRGTRRLLVEGG 183 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 V +F+ + LVD + L + +GE P+ Sbjct: 184 TTVHTAFLTAGLVDELHLVIAPFFVGEAAAPT 215 >gi|71902073|ref|ZP_00684112.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Ann-1] gi|71728165|gb|EAO30357.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Ann-1] Length = 203 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 PV +M AL + P A LI +G ++G G +T++ HAE+ Sbjct: 44 PVLPEHTHWMRHALTLAHRAATEFDEIPVGAVLISPEGTLLGEGCNYNITSHDPSAHAEI 103 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL AG + R G T YVTLEPC CA II I ++ DP Sbjct: 104 MALRAAGHQLRNHRMPGCTLYVTLEPCLM------CAMAIIHARIAHLIYAATDPKTGAC 157 Query: 113 G 113 G Sbjct: 158 G 158 >gi|296875658|ref|ZP_06899727.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC 15912] gi|322390383|ref|ZP_08063906.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC 903] gi|296433342|gb|EFH19120.1| possible cytosine deaminase [Streptococcus parasanguinis ATCC 15912] gi|321142924|gb|EFX38379.1| tRNA-specific adenosine deaminase [Streptococcus parasanguinis ATCC 903] Length = 180 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 11/81 (13%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA 63 A FM AL+ + + L + + C++VKDG +IGRG A HAE+ A+EEA Sbjct: 20 AMFMREALKEA--EIALANDEIPIGCVLVKDGQIIGRGHNAREELQRAVMHAEIMAIEEA 77 Query: 64 GEEARG-----ATAYVTLEPC 79 + T +VT+EPC Sbjct: 78 NQRENSWRLLDTTLFVTIEPC 98 >gi|154491043|ref|ZP_02030984.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC 43184] gi|154088791|gb|EDN87835.1| hypothetical protein PARMER_00962 [Parabacteroides merdae ATCC 43184] Length = 144 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 59/144 (40%), Gaps = 38/144 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A + W V LIVKD ++I G Y G P Sbjct: 11 LDKRYLRMA---AVWAENSYCKRRQVGALIVKDQMIISDG---YNGTPSGFENVCEDEHN 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + ++GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTKPYVLHAEANAITKVAASSNSSKGATIYVTSAPCIE------CAKLIIQSGIKRVVY- 117 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127 RV G L + G+I+D Sbjct: 118 --SEKYRVED-GCNLLRRAGVIID 138 >gi|170723352|ref|YP_001751040.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619] gi|169761355|gb|ACA74671.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619] Length = 159 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 60/135 (44%), Gaps = 18/135 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 S D FM AL + L V ++V+ G VIG+G + HAE+ A+ Sbjct: 9 SRDQEFMRMALDLAAQGAALGEV--PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A + A G+T YVTLEPCS CA I+ + RVV +P + Sbjct: 67 RAAAKSASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 120 Query: 116 LQWLSQKGIIVDRMM 130 Q+ SQ G + R+M Sbjct: 121 GQFFSQ-GFLNHRVM 134 >gi|152997998|ref|YP_001342833.1| zinc-binding CMP/dCMP deaminase [Marinomonas sp. MWYL1] gi|150838922|gb|ABR72898.1| CMP/dCMP deaminase zinc-binding [Marinomonas sp. MWYL1] Length = 162 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 61/139 (43%), Gaps = 33/139 (23%) Query: 31 VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V DG +IG G A HAE+QA+ A + GAT YVTLEPCS Sbjct: 25 VGAIVVLDGEIIGEGYNAPISLCDPTAHAEIQAIRMACKTINNYRLPGATLYVTLEPCSM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 CA ++ I RVV +P + GI+ ES+G F + Sbjct: 85 ------CAGAMVHARIDRVVYAATEP-------------KSGIV-----ESQGHFFEAPF 120 Query: 142 LTRQVEKRSHITLKIAVSQ 160 L +V+ S + ++A Q Sbjct: 121 LNHKVKVESGVLAEMASLQ 139 >gi|323492402|ref|ZP_08097552.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG 20546] gi|323313363|gb|EGA66477.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG 20546] Length = 181 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 22/127 (17%) Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53 M S F D FM A+ ++ H P V ++VKDG +I G + ++ Sbjct: 1 MSESQFTPQDELFMRRAMELAQ-HAEEQGEVP-VGAVLVKDGEIIAEGWNESIGSHDATA 58 Query: 54 HAEVQALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+Q + +AG E R T YVTLEPC P CA ++ ++R+V PD Sbjct: 59 HAEMQTIRKAGLALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGA--PD 110 Query: 109 VRVSGRG 115 ++ G Sbjct: 111 LKAGAAG 117 >gi|281419672|ref|ZP_06250671.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri DSM 18205] gi|281406201|gb|EFB36881.1| cytidine/deoxycytidylate deaminase family protein [Prevotella copri DSM 18205] Length = 150 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 63/156 (40%), Gaps = 47/156 (30%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 + D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 9 TKLDLRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 61 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC CA+ II+ GI+RVV Sbjct: 62 NNVTKPYVLHAEANAITKLARSSNNSEGSTLYVTASPCIE------CAKLIIQSGIKRVV 115 Query: 102 VC----VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 +DD G++ + + GI V+ + E Sbjct: 116 YAEKYRLDD--------GIKLMQRAGIKVEYLNPDE 143 >gi|218708682|ref|YP_002416303.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32] gi|218321701|emb|CAV17655.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32] Length = 212 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 61/142 (42%), Gaps = 24/142 (16%) Query: 31 VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG VI G GC HAE++ L +AG+ T YVTLEPC Sbjct: 50 VGAVLVKDGEVISEGWNRSIGCHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ ++R+V D +G L + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVEHGLLEEECRE 163 Query: 137 FLHAYLTRQ----VEKRSHITL 154 L A+ R+ EKR+ L Sbjct: 164 QLQAFFKRRRKEIKEKRNQERL 185 >gi|21231608|ref|NP_637525.1| hypothetical protein XCC2169 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768270|ref|YP_243032.1| hypothetical protein XC_1949 [Xanthomonas campestris pv. campestris str. 8004] gi|188991407|ref|YP_001903417.1| Putative cytidine / deoxycytidylate deaminase family protein [Xanthomonas campestris pv. campestris str. B100] gi|21113299|gb|AAM41449.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573602|gb|AAY49012.1| conserved hypothetical protein [Xanthomonas campestris pv. campestris str. 8004] gi|167733167|emb|CAP51365.1| Putative cytidine / deoxycytidylate deaminase family protein [Xanthomonas campestris pv. campestris] Length = 171 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 15/118 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D ++M+ ALR + P A L+ G ++G G + ++ HAE+ A+ Sbjct: 15 QIDQQWMTHALRLAERAERDYDEIPVGAVLVDPTGALLGEGWNFNIASHDPSAHAEIMAM 74 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 E G G T YVTLEPC+ CA +I I RVV DP G Sbjct: 75 REGGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGACG 126 >gi|297559746|ref|YP_003678720.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844194|gb|ADH66214.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 14/193 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R + L A+S D I G + ++ ++ LRA+ DAILVG GT+ AD+P L Sbjct: 2 DRPYTILSCAMSVDGRIDDTGPERLRLSNEADFAEIDELRAECDAILVGAGTLRADNPGL 61 Query: 208 TCRLNGLQEHSP--------MRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLA 257 R L+E ++ ++ + ++ T V+ D A Sbjct: 62 LVRSPLLRERRRERGRTAHLLKALVTRSGEFDPAARFFSTGDAGAVVYTGGAGVDTARRA 121 Query: 258 LAFRKKNIN----IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 LA R + D ++ +L L RGV LLVEGG + F+ S LVD + L Sbjct: 122 LADRPAADPPAEVVDAGDPPTVRAVLADLADRGVGRLLVEGGGHIHTLFLTSGLVDELRL 181 Query: 314 YRSQIVIGEGGIP 326 + ++G+ P Sbjct: 182 AVAPFLVGQEDAP 194 >gi|153807590|ref|ZP_01960258.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185] gi|149129952|gb|EDM21164.1| hypothetical protein BACCAC_01872 [Bacteroides caccae ATCC 43185] Length = 148 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S D R++ A S W V LIVKD ++I G Y G P Sbjct: 8 SELDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDE 61 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 62 NNLTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|149236051|ref|XP_001523903.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239] gi|146452279|gb|EDK46535.1| cytosine deaminase [Lodderomyces elongisporus NRRL YB-4239] Length = 160 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEA----RGATAYVTLEPCS 80 P CLI KDG V+GRG G P H E+ LE AG + T Y TL PC+ Sbjct: 36 PIGGCLIHKDGRVLGRGYNKRVQNGSPILHGEMSVLENAGRLPHSIYKDCTMYTTLSPCN 95 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I+ GI+RVV+ +D V G + L Q G+ + + + K L Sbjct: 96 M------CTGAILLYGIKRVVMGENDTFV----GGEELLKQNGVELVNLQDEGCKEILTK 145 Query: 141 YLTRQVE 147 ++ + E Sbjct: 146 FIQEKPE 152 >gi|153216547|ref|ZP_01950510.1| zinc-binding domain protein [Vibrio cholerae 1587] gi|124114222|gb|EAY33042.1| zinc-binding domain protein [Vibrio cholerae 1587] Length = 193 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGCNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|66047004|ref|YP_236845.1| cytosine deaminase [Pseudomonas syringae pv. syringae B728a] gi|289676943|ref|ZP_06497833.1| cytosine deaminase [Pseudomonas syringae pv. syringae FF5] gi|302187712|ref|ZP_07264385.1| cytosine deaminase [Pseudomonas syringae pv. syringae 642] gi|63257711|gb|AAY38807.1| Cytosine deaminase [Pseudomonas syringae pv. syringae B728a] gi|330977861|gb|EGH77764.1| cytosine deaminase [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 145 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA F +GL + +IV G +IGRG V H E+ ALE AG Sbjct: 4 FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R + Y TL PC+ C+ I+ GIR+V++ Sbjct: 62 QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96 >gi|15676827|ref|NP_273972.1| cytidine and deoxycytidylate deaminase family protein [Neisseria meningitidis MC58] gi|7226171|gb|AAF41340.1| cytidine and deoxycytidylate deaminase family protein [Neisseria meningitidis MC58] gi|316985330|gb|EFV64279.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Neisseria meningitidis H44/76] gi|325140176|gb|EGC62703.1| tRNA-specific adenosine deaminase [Neisseria meningitidis CU385] gi|325200381|gb|ADY95836.1| tRNA-specific adenosine deaminase [Neisseria meningitidis H44/76] Length = 239 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMCEALRQAEQSSA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 137 NVSRHAEINALAQAGREIQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|327483608|gb|AEA78015.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae LMA3894-4] Length = 175 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 32 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G L S + + ++E E + Sbjct: 90 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLDLFSSQAAYHYATVEKGLLEEECRA 145 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 146 QLQAFFQR---RRKEIKAK 161 >gi|237808810|ref|YP_002893250.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187] gi|237501071|gb|ACQ93664.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187] Length = 164 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 MP S D +M A++ +R + V ++V + VIG G + + C HAE Sbjct: 1 MPQSEQDIHWMQYAMQLAR--RAEEAGEVPVGAVLVLNNEVIGEGWNLSICRHDPCAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +AG+ GAT YVTLEPC CA +I I R+V D Sbjct: 59 IMAIRQAGQNIGNYRLLGATLYVTLEPCIM------CAGAMIHSRIERLVYGASDLKTGA 112 Query: 112 SG 113 +G Sbjct: 113 AG 114 >gi|209694336|ref|YP_002262264.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238] gi|208008287|emb|CAQ78433.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238] Length = 177 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 33/152 (21%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IV +G +IG G + + HAE+ A+++AG+ AT YVTLEPC Sbjct: 32 VGAVIVLNGEIIGEGWNRSIGTHDATAHAEMMAIKQAGQTVENYRLVNATLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131 P CA I++ I++V D SG + + + G++ D E Sbjct: 90 ----PMCAGAIVQSRIKQVFFGAADLKTGASGSVINLFTAATAFHFVECESGLMADECRE 145 Query: 132 SEGKIF--------LHAYLTRQVEKRSHITLK 155 F L R+VEK+ + K Sbjct: 146 QLQAFFKRRRKEKKEEKQLQREVEKKDELESK 177 >gi|317493152|ref|ZP_07951575.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918812|gb|EFV40148.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 170 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 71/160 (44%), Gaps = 26/160 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 DA +M AL ++ W G V ++V D VIG+G +T + HAE+ AL Sbjct: 6 DAYWMKQALALAQKAWEQGEVP----VGAILVLDDEVIGQGWNRPITRHDPTAHAEIMAL 61 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++ G+ + AT YVTLEPC CA ++ I+R+V D +G Sbjct: 62 QQGGQIVQNYRLLNATLYVTLEPCVM------CAGAMVHSRIKRLVYGASDLKTGAAGSL 115 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150 L L G+ I +M +E L + ++ E++ Sbjct: 116 LDVLRHPGMNHQIEITAGVMANECSEMLSQFFQQRREQKK 155 >gi|86145643|ref|ZP_01063973.1| Cytosine/adenosine deaminase [Vibrio sp. MED222] gi|85836614|gb|EAQ54740.1| Cytosine/adenosine deaminase [Vibrio sp. MED222] Length = 212 Score = 46.6 bits (109), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 20/129 (15%) Query: 31 VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG VI G GC HAE++ L +AG+ T YVTLEPC Sbjct: 50 VGAVLVKDGEVISEGWNRSIGCHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ ++R+V D +G L + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVEHGLLEEECRE 163 Query: 137 FLHAYLTRQ 145 L A+ R+ Sbjct: 164 QLQAFFKRR 172 >gi|325134098|gb|EGC56751.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M13399] gi|325206234|gb|ADZ01687.1| tRNA-specific adenosine deaminase [Neisseria meningitidis M04-240196] Length = 163 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 6 PVAAFPPQEEMEHFMREALRQAEQSAADGEI--PVGAVIVSDGKIIA---SAHNTCIADC 60 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ IRRV+ Sbjct: 61 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIRRVIYGA 114 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 115 AEPKTGAAGSIVNLFADK 132 >gi|295089886|emb|CBK75993.1| Cytosine/adenosine deaminases [Clostridium cf. saccharolyticum K10] Length = 214 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D R+M A+R ++ W +G + C+IV G +IGRG T HAE+ A+ Sbjct: 42 DERYMREAVRQAKKAWALGEVP----IGCVIVHRGKIIGRGYNRRTTDGNVLAHAEILAI 97 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A T YVTLEPC P CA I++ I +VV+ +P +G Sbjct: 98 RKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 151 Query: 116 LQWLSQKGI 124 L L ++G Sbjct: 152 LDLLHEEGF 160 >gi|229525486|ref|ZP_04414891.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis VL426] gi|229339067|gb|EEO04084.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis VL426] Length = 193 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 23/146 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNSSITNHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L A+ R +R I K + N Sbjct: 164 QLQAFFQR---RRKEIKAKRDAERKN 186 >gi|284033054|ref|YP_003382985.1| bifunctional deaminase-reductase domain-containing protein [Kribbella flavida DSM 17836] gi|283812347|gb|ADB34186.1| bifunctional deaminase-reductase domain protein [Kribbella flavida DSM 17836] Length = 242 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 16/192 (8%) Query: 145 QVEKRS--HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV-- 200 QV RS H+ S D + + G S ++G + LR SD +LVG GTV Sbjct: 17 QVADRSVPHLRCNFVTSIDGAMEVEG-KSKALSGAADQEIFGKLRMLSDVVLVGAGTVRI 75 Query: 201 -------LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 L+ R GL E+ P I+ L S + A + P I+ T Sbjct: 76 EGYRPLRLSAARREWRRAQGLPEN-PTLAIVSSRLDLDPASPFLAEAPVRP-IVFTHTAS 133 Query: 254 PVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 P+ A + +++ C DL+ ++ LV RG+ +L EGG + + + LVD + Sbjct: 134 PLDAREALAEVADVVVCGRAGVDLRAVMKTLVERGLPQVLSEGGPHLLGALTAADLVDEM 193 Query: 312 ILYRSQIVIGEG 323 L + ++ G G Sbjct: 194 CLSLAPVLAGPG 205 >gi|169630059|ref|YP_001703708.1| hypothetical protein MAB_2976 [Mycobacterium abscessus ATCC 19977] gi|169242026|emb|CAM63054.1| Conserved hypothetical protein (possible reductase) [Mycobacterium abscessus] Length = 260 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 13/151 (8%) Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKII 237 +RA +D ILVG GTV A+ GL Q+ P ++ + + + Sbjct: 79 MRANADVILVGSGTVRAERYHGAHLPVGLRQRRQSRGQDEVPTIAVVTASGAVDPSTPLF 138 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEG 294 + +AP+++ + + P +A R I+ D DL L L RG++ +L EG Sbjct: 139 NESEVAPIVVTSASGAP--HVASRVPGAQILVSGDGDTVDLPAALATLHARGLSRVLCEG 196 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 G A+ + +++ LVD + L + IG G+ Sbjct: 197 GPALLGTLLSAHLVDELCLTIAPTTIGGAGL 227 >gi|313200758|ref|YP_004039416.1| cmp/dcmp deaminase zinc-binding protein [Methylovorus sp. MP688] gi|312440074|gb|ADQ84180.1| CMP/dCMP deaminase zinc-binding protein [Methylovorus sp. MP688] Length = 175 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V L+V DG +IGRG+ A + HAE+QA+ EA G T YVTLEPC+ Sbjct: 38 VGALVVLDGAIIGRGMNAPIGRHDPTAHAEIQAMREAASAIGNYRLVGCTLYVTLEPCAM 97 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 C+ I I R+V DP G + +++ Sbjct: 98 ------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAE 131 >gi|296314748|ref|ZP_06864689.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC 43768] gi|296838389|gb|EFH22327.1| tRNA-specific adenosine deaminase [Neisseria polysaccharea ATCC 43768] Length = 239 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--- 53 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMREALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 54 ----HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ I+RV+ Sbjct: 137 NVSCHAEINALAQAGSEMQNYRLDGCDIYITLEPCAM------CASALIQARIKRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 AEPKTGAAGSIVNLFADK 208 >gi|229513031|ref|ZP_04402497.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21] gi|254285542|ref|ZP_04960506.1| zinc-binding domain protein [Vibrio cholerae AM-19226] gi|150424404|gb|EDN16341.1| zinc-binding domain protein [Vibrio cholerae AM-19226] gi|229349924|gb|EEO14878.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21] Length = 193 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|255693361|ref|ZP_05417036.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides finegoldii DSM 17565] gi|260620838|gb|EEX43709.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides finegoldii DSM 17565] Length = 149 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 49/120 (40%), Gaps = 34/120 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S D R++ A S W V LIVKD ++I G Y G P Sbjct: 8 SELDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDE 61 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 62 NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|71733993|ref|YP_273732.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A] gi|257486822|ref|ZP_05640863.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625968|ref|ZP_06458922.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647969|ref|ZP_06479312.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 2250] gi|298488192|ref|ZP_07006229.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554546|gb|AAZ33757.1| cytosine deaminase [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157471|gb|EFH98554.1| Cytosine deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325406|gb|EFW81471.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. B076] gi|320327453|gb|EFW83466.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4] gi|330869365|gb|EGH04074.1| cytosine deaminase [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330877290|gb|EGH11439.1| cytosine deaminase [Pseudomonas syringae pv. glycinea str. race 4] gi|330988661|gb|EGH86764.1| cytosine deaminase [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010292|gb|EGH90348.1| cytosine deaminase [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 145 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA+ +GL + +IV +G +IGRG V H E+ ALE AG Sbjct: 4 FMQAAI--DEAQLGLKEGGIPIGSVIVHEGKIIGRGHNRRVQEGSATRHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R A Y TL PC+ C+ I+ GIR+V+V Sbjct: 62 QPARVYRDAVLYTTLSPCAM------CSGAILLYGIRKVIV 96 >gi|254225102|ref|ZP_04918716.1| zinc-binding domain protein [Vibrio cholerae V51] gi|125622489|gb|EAZ50809.1| zinc-binding domain protein [Vibrio cholerae V51] Length = 193 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|218129661|ref|ZP_03458465.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697] gi|317477506|ref|ZP_07936731.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides eggerthii 1_2_48FAA] gi|217988391|gb|EEC54714.1| hypothetical protein BACEGG_01240 [Bacteroides eggerthii DSM 20697] gi|316906307|gb|EFV28036.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides eggerthii 1_2_48FAA] Length = 145 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 NITKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKRVV 117 >gi|325958148|ref|YP_004289614.1| Cytosine deaminase [Methanobacterium sp. AL-21] gi|325329580|gb|ADZ08642.1| Cytosine deaminase [Methanobacterium sp. AL-21] Length = 157 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 16/107 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D +FM AL+ ++ L S + ++VKDG+++GRG + HAE+ Sbjct: 7 SEDDYKFMMEALKEAK--KSLESGGIPIGAILVKDGVIVGRGHNNLLQKNSTILHAEMDC 64 Query: 60 LEEA----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 +E + G++ + +T Y TL PC C+ II I RVV+ Sbjct: 65 IENSGRLKGKDYKRSTLYTTLSPCEM------CSGTIILYKISRVVI 105 >gi|330971095|gb|EGH71161.1| cytosine deaminase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 145 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA F +GL + +IV G +IGRG V H E+ ALE AG Sbjct: 4 FMQAA--FDEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R + Y TL PC+ C+ I+ GIR+V++ Sbjct: 62 QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96 >gi|213585178|ref|ZP_03367004.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 69 Score = 46.6 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 22/54 (40%), Positives = 32/54 (59%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHAL 56 >gi|153830778|ref|ZP_01983445.1| zinc-binding domain protein [Vibrio cholerae 623-39] gi|148873734|gb|EDL71869.1| zinc-binding domain protein [Vibrio cholerae 623-39] Length = 193 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|237798885|ref|ZP_04587346.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021739|gb|EGI01796.1| cytosine deaminase [Pseudomonas syringae pv. oryzae str. 1_6] Length = 145 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 46/101 (45%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA F G + +IV DG +IGRG V H E+ ALE AG Sbjct: 4 FMRAA--FEEAQHGQEEGGIPIGSVIVHDGKIIGRGRNRRVQNASATLHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R A Y TL PC+ C+ I+ GIR+V+V Sbjct: 62 QPASVYREAVLYTTLSPCAM------CSGAILLYGIRKVIV 96 >gi|218283248|ref|ZP_03489309.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989] gi|218216003|gb|EEC89541.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989] Length = 158 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M A++ ++ + + C+IVKD +I RG T HAE+ A+++ Sbjct: 5 DVKWMKEAIKQAK--KAESYDEVPIGCVIVKDDKIIARGYNKRETLQQSIAHAEIMAIQK 62 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A ++ YVTLEPC P CA II+ I+ VV DP Sbjct: 63 ACKKLGTWRLEDCVLYVTLEPC------PMCAGAIIQSRIKEVVYGASDP 106 >gi|302879427|ref|YP_003847991.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans ES-2] gi|302582216|gb|ADL56227.1| CMP/dCMP deaminase zinc-binding [Gallionella capsiferriformans ES-2] Length = 240 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++VKDG +IGRG A + HAE+QAL A + G +VTLEPC Sbjct: 100 VGAVVVKDGQIIGRGYNAPISLHDPSAHAEMQALRAAAQYLGNYRLVGCELFVTLEPCVM 159 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 CA I+ IRR+V D V G L +++ Sbjct: 160 ------CAGAIMHARIRRLVYGASDFKTGVCGSLLDLFAEQ 194 >gi|254389244|ref|ZP_05004473.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] gi|326444934|ref|ZP_08219668.1| putative deaminase [Streptomyces clavuligerus ATCC 27064] gi|197702960|gb|EDY48772.1| riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] Length = 154 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 13/130 (10%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYG--GCP--HAEVQALEE-AGE 65 LR+ + +GL + P A +++G G T Y P HAE AL + G Sbjct: 10 LRWMQHAIGLAALCPPAAGAYSVGAVIVGEGGAELATGYSREADPRGHAEEAALAKLPGG 69 Query: 66 EARGATA--YVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQ 121 + R ATA Y TLEPCS PCA I+ GI RVV+ +P+ V+ G++ L Sbjct: 70 DLRLATATIYSTLEPCSQRSADRTPCAGLILRAGIPRVVIAWREPNHFVTDCVGVEQLQA 129 Query: 122 KGIIVDRMME 131 G+ V M E Sbjct: 130 AGVTVVEMPE 139 >gi|167765189|ref|ZP_02437302.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC 43183] gi|167696817|gb|EDS13396.1| hypothetical protein BACSTE_03575 [Bacteroides stercoris ATCC 43183] Length = 145 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 NLTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CAKLIIQAGIKRVV 117 >gi|119946930|ref|YP_944610.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37] gi|119865534|gb|ABM05011.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37] Length = 176 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IVKD ++ G + + C HAE+ A++ AG++ + T YVTLEPC+ Sbjct: 36 VGAVIVKDNKIVAEGWNLSIINHNACAHAEIMAIQSAGQKIQNYRLIDCTLYVTLEPCA- 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I+R+V D +G Sbjct: 95 -----MCAGALVHARIKRLVYGAGDYKTGAAG 121 >gi|153813521|ref|ZP_01966189.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174] gi|149830392|gb|EDM85484.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174] Length = 164 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 22/158 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66 M A+R ++ L + C+IV DG +I RG T HAE+ A+ +A ++ Sbjct: 1 MKEAIRQAKKARALEEV--PIGCVIVSDGKIIARGYNRRNTDKNTLSHAELNAIRKASKK 58 Query: 67 A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-- 119 G T YVTLEPC CA +++ I VV+ +P +G L L Sbjct: 59 LGDWRLEGCTMYVTLEPCQM------CAGALVQSRIDEVVIGSMNPKAGCAGSVLNLLQV 112 Query: 120 ---SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 + + I ++E E + L + EK+ + + Sbjct: 113 DNFNHQVKITRGVLEEECSMMLSDFFRELREKKKRLKM 150 >gi|297581254|ref|ZP_06943178.1| zinc-binding domain-containing protein [Vibrio cholerae RC385] gi|297534570|gb|EFH73407.1| zinc-binding domain-containing protein [Vibrio cholerae RC385] Length = 193 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 50 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 107 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 108 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 163 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 164 QLQAFFQR---RRKEIKAK 179 >gi|330942469|gb|EGH45066.1| cytosine deaminase [Pseudomonas syringae pv. pisi str. 1704B] Length = 145 Score = 46.2 bits (108), Expect = 0.007, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AAL +GL + +IV G +IGRG V H E+ ALE AG Sbjct: 4 FMQAAL--DEAQLGLKEGGIPIGSVIVHGGKIIGRGHNRRVQEGSATKHGEIDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R + Y TL PC+ C+ I+ GIR+V++ Sbjct: 62 QPASVYRDSVLYTTLSPCAM------CSGAILLYGIRKVII 96 >gi|294787884|ref|ZP_06753128.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453] gi|294484177|gb|EFG31860.1| tRNA-specific adenosine deaminase [Simonsiella muelleri ATCC 29453] Length = 240 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 20/129 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +++ G +I + V + C HAE+Q +E+AG+ + YVTLEPC+ Sbjct: 116 VGAILLHQGKIIAQAHNLCVAGHSVCQHAEIQVIEQAGKILQNYRLDECDLYVTLEPCAM 175 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA I++ IRR++ +P + +G L + K + + ++ E K Sbjct: 176 ------CAGAIVQARIRRLIFAAPEPKMGAAGSVLNIFANKRLNSHTAVKSGILADESKA 229 Query: 137 FLHAYLTRQ 145 L + ++ Sbjct: 230 ILQQFFQQK 238 >gi|300775315|ref|ZP_07085177.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910] gi|300506055|gb|EFK37191.1| competence protein ComEB [Chryseobacterium gleum ATCC 35910] Length = 140 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 64/155 (41%), Gaps = 38/155 (24%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 ++ FD ++ A W V LIVKD ++I G Y G P Sbjct: 1 MNKFDKAYLKMA---QEWAKLSYCKRKQVGALIVKDRMIISDG---YNGTPSGFENCCED 54 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L + + A+GAT Y+TL PC C++ I++ GI R+ Sbjct: 55 EEGKTHWYVLHAEANAILKLAASTQSAKGATLYLTLSPC------KECSKLILQAGITRL 108 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 V + D G+ +L I ++++ + E K Sbjct: 109 VYINEYSD----DDGISFLRNHNIEIEQISDCELK 139 >gi|255279741|ref|ZP_05344296.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM 14469] gi|255269514|gb|EET62719.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM 14469] Length = 166 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 17/119 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59 S +FM A+R ++ L + C+IV+DG +I RG T HAE+ A Sbjct: 6 SKIHEKFMREAIRQAKKAYALDEV--PIGCVIVQDGKIIARGYNRRNTDKNTLSHAELIA 63 Query: 60 LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +++A ++ G T Y+TLEPC CA +++ + V+ +P +G Sbjct: 64 IKKAAKKTGDWRLEGCTMYITLEPCQM------CAGAMVQARLTEAVIGSMNPKAGCAG 116 >gi|262190740|ref|ZP_06048969.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93] gi|262033384|gb|EEY51893.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93] Length = 175 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 32 VGAVLVRDGEIIAEGWNGSITNHDATAHAEIEVIRKAGKALSNYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA ++ ++R+V D +G + S + + ++E E + Sbjct: 90 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVMDLFSSQAAYHYATVEKGLLEEECRA 145 Query: 137 FLHAYLTRQVEKRSHITLK 155 L A+ R +R I K Sbjct: 146 QLQAFFQR---RRKEIKAK 161 >gi|71275637|ref|ZP_00651922.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Dixon] gi|71897819|ref|ZP_00680045.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Ann-1] gi|71163528|gb|EAO13245.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Dixon] gi|71732374|gb|EAO34428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Xylella fastidiosa Ann-1] Length = 203 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPC 79 P A LI +G ++G G +T++ HAE+ AL AG + R G T YVTLEPC Sbjct: 71 PVGAVLISPEGTLLGEGCNYNITSHDPSAHAEIMALRAAGHQLRNHRMPGCTLYVTLEPC 130 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA II I ++ DP G Sbjct: 131 LM------CAMAIIHARIAHLIYAAADPKTGACG 158 >gi|225575495|ref|ZP_03784105.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM 10507] gi|225037292|gb|EEG47538.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM 10507] Length = 183 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 17/121 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 ++M A+R ++ L + C+IV DG +I RG T HAE+ A+++A Sbjct: 29 KYMREAIRQAKKAWALDEV--PIGCVIVFDGKIIARGYNRRNTDRNTLSHAELNAIKKAS 86 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ G T YVTLEPC CA I++ I VV+ +P +G L L Sbjct: 87 KKLGDWRLEGCTMYVTLEPCQM------CAGAIVQARIDEVVIGSMNPKAGCAGSVLNLL 140 Query: 120 S 120 Sbjct: 141 D 141 >gi|160947058|ref|ZP_02094225.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270] gi|158446192|gb|EDP23187.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270] Length = 155 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 17/107 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 S D FM AL+ ++ + C+IVKD ++ RG ++ G HAE+ A+ Sbjct: 2 SRDEYFMDIALKEAKK--AYNKGEVPIGCVIVKDDKIVSRGHNQVLSKKSGVNHAEIIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 +AG++ +VTLEPC CA I+ I+RV++ Sbjct: 60 NKAGQKLGDFRLEDTELFVTLEPCCM------CAGAIVNSRIKRVII 100 >gi|307565320|ref|ZP_07627813.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella amnii CRIS 21A-A] gi|307345989|gb|EFN91333.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella amnii CRIS 21A-A] Length = 145 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 50/120 (41%), Gaps = 36/120 (30%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S D R+ LR +R W V L+VK+ ++I G Y G P Sbjct: 7 SLDCRY----LRMARIWAENSYCQRRKVGTLVVKNKMIISDG---YNGTPSGFENVCEDS 59 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L +G + GAT YVT PC CA+ II+ GI+R+V Sbjct: 60 NNVTKPYVLHAEANAITKLARSGNNSEGATIYVTDAPCIE------CAKLIIQAGIKRIV 113 >gi|213026041|ref|ZP_03340488.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 46.2 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL G + Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMGGRQ 56 >gi|229495862|ref|ZP_04389588.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas endodontalis ATCC 35406] gi|229317175|gb|EEN83082.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas endodontalis ATCC 35406] Length = 146 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 50/119 (42%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W T V LIVKD ++I G Y G P Sbjct: 10 LDKRY----LRMARIWSENSYCTRRKVGALIVKDQMIISDG---YNGTPSGFENVCEDES 62 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + +G + GAT Y+T PC CA+ II+ I+RVV Sbjct: 63 GLTKPYVLHAEANAITKVACSGNNSDGATIYITASPCVE------CAKLIIQSKIKRVV 115 >gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720] gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720] Length = 590 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 61/135 (45%), Gaps = 12/135 (8%) Query: 1 MPVSSFDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEV 57 P + D++ FM AL +R G T T +V ++V DG V+ G + G HAE Sbjct: 433 FPSWALDSKRKFMELALENAR-KCGETQTQFNVGAVLVLDGQVLSTGHSRELPGNTHAEQ 491 Query: 58 QALEEAGEEA------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 ALE+ E+ G Y T+EPCS + PC II I+ V V +PD Sbjct: 492 CALEKYFEKTGQRNVPEGTEIYTTMEPCSLRLSGNLPCVDRIIATNIKTCYVGVVEPDTF 551 Query: 111 VSGR-GLQWLSQKGI 124 V G L + G+ Sbjct: 552 VENNTGQAKLREAGV 566 >gi|148981936|ref|ZP_01816576.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3] gi|145960698|gb|EDK26041.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3] Length = 181 Score = 46.2 bits (108), Expect = 0.008, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 47/94 (50%), Gaps = 17/94 (18%) Query: 31 VACLIVKDGIVI----GRGVTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG VI R + ++ HAEV+ L +AG E R T YVTLEPC Sbjct: 32 VGAVLVKDGEVISEGWNRSIGSHDATAHAEVETLRKAGQVLENYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 P CA ++ ++R+V PD++ G Sbjct: 90 ----PMCAGALLHSRVKRIVFGA--PDLKAGAAG 117 >gi|315225628|ref|ZP_07867437.1| competence protein ComEB [Capnocytophaga ochracea F0287] gi|314944445|gb|EFS96485.1| competence protein ComEB [Capnocytophaga ochracea F0287] Length = 146 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 38/148 (25%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 +D +M A+ +++ S V +IVKD ++I G Y G P Sbjct: 12 YDKAYMRMAMEWAKLSY---SQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEEG 65 Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + + GAT Y+T+ PC C++ I + GI+RVV Sbjct: 66 NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMME 131 D GL +L + G+ V + E Sbjct: 120 EGYRD----NEGLAFLEKAGVEVVHLEE 143 >gi|256391606|ref|YP_003113170.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM 44928] gi|256357832|gb|ACU71329.1| CMP/dCMP deaminase zinc-binding [Catenulispora acidiphila DSM 44928] Length = 164 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/85 (41%), Positives = 41/85 (48%), Gaps = 5/85 (5%) Query: 54 HAEVQALEEAGEEA---RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 HAE AL G GAT Y +LEPCS R C Q II GIRRVV +P + Sbjct: 66 HAEESALNTLGPNHPRLSGATVYSSLEPCSIRKSRPLTCTQLIIASGIRRVVFAWREPSL 125 Query: 110 RVSG-RGLQWLSQKGIIVDRMMESE 133 V +G + L + GI V E E Sbjct: 126 LVEDCQGAELLREAGIEVVEFPEFE 150 >gi|205371946|ref|ZP_03224765.1| hypothetical protein Bcoam_00240 [Bacillus coahuilensis m4-4] Length = 160 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 15/99 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IVKDG VI G T HAEV A+++A E+ GA YVTLEPC Sbjct: 25 IGAVIVKDGEVIATGHNLRETTQNAITHAEVIAIQKACEKLGTWRLEGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 P C+ I++ I +V+ DP +G + L Sbjct: 83 ----PMCSGAIVQSRIEKVIYGAKDPKAGCAGSLMNLLQ 117 >gi|149190045|ref|ZP_01868322.1| cytosine/adenosine deaminase [Vibrio shilonii AK1] gi|148836075|gb|EDL53035.1| cytosine/adenosine deaminase [Vibrio shilonii AK1] Length = 178 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D RFM A+ + H P V ++V+ G +I G + + HAE+Q + + Sbjct: 14 DRRFMQRAMELAN-HAESEGEVP-VGAVLVRGGKIIAEGWNQSIGNHDATAHAEMQVIRK 71 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AG+ T YVTLEPC P CA ++ ++RVV PD++ G Sbjct: 72 AGQNLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGA--PDLKAGAAG 121 >gi|313905719|ref|ZP_07839079.1| Cof-like hydrolase [Eubacterium cellulosolvens 6] gi|313469426|gb|EFR64768.1| Cof-like hydrolase [Eubacterium cellulosolvens 6] Length = 450 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 17/114 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 ++M AA+R ++ + + +IV+DG +I RG T + HAE+ AL +A Sbjct: 300 KYMRAAIREAKRAASIGEV--PIGAVIVRDGEIIARGYNRRNTDHNTLSHAELNALRKAS 357 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 ++ G T YVT+EPC CA +++ I +VV+ P +G Sbjct: 358 KKLGDWRLEGCTMYVTMEPCQM------CAGALVQSRIDKVVIGCMSPKTGCAG 405 >gi|255007771|ref|ZP_05279897.1| putative deoxycytidylate deaminase [Bacteroides fragilis 3_1_12] gi|313145475|ref|ZP_07807668.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12] gi|313134242|gb|EFR51602.1| deoxycytidylate deaminase [Bacteroides fragilis 3_1_12] Length = 145 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 34/120 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S D R++ A + W V LIVKD ++I G Y G P Sbjct: 9 SDLDKRYIRMA---AIWSENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENICEDD 62 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 63 NNVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|291301495|ref|YP_003512773.1| bifunctional deaminase-reductase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570715|gb|ADD43680.1| bifunctional deaminase-reductase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 82/192 (42%), Gaps = 18/192 (9%) Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---------LADDPELTC 209 S D + + G S ++G +LR + D ++VG GTV L+ D Sbjct: 34 SADGAVEVNG-DSKALSGEDDMRVFRILRMRCDVLVVGAGTVRTDGYRALRLSQDRVEWR 92 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFRKKNINII 268 R GL +H P+ ++ L LD+ + + A + P++I E+ D LA ++ Sbjct: 93 RAAGLPDH-PVMAVVSRSGILDLDTPLFREAPVRPIVITPEDLDAKRLAELSDVADVVAA 151 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----- 323 D + L RG+ +L EGG V + LVD + L S + G G Sbjct: 152 GTGSVDFAEAFERLRQRGLRQILCEGGPHVFGEITAAGLVDELCLTLSPHLAGAGSGRIT 211 Query: 324 -GIPSPLEEGYL 334 G PSPL+ +L Sbjct: 212 AGPPSPLKRMHL 223 >gi|118580396|ref|YP_901646.1| cytosine deaminase [Pelobacter propionicus DSM 2379] gi|118503106|gb|ABK99588.1| Cytosine deaminase [Pelobacter propionicus DSM 2379] Length = 145 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AAL +R GL + L+V G V+GRG V HAE+ ALE AG Sbjct: 4 FMQAALEEAR--KGLAEGGIPIGSLVVHRGAVLGRGHNRRVQKGSVILHAEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 R + Y TL PC P CA I+ GI RVV+ Sbjct: 62 MPAAIYRESVLYTTLSPC------PMCAGAILLYGIPRVVI 96 >gi|254471099|ref|ZP_05084502.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Pseudovibrio sp. JE062] gi|211960241|gb|EEA95438.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Pseudovibrio sp. JE062] Length = 275 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 74/145 (51%), Gaps = 10/145 (6%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +H LRA DA++VG+GT +AD+P+LT R + P RI++DP+ ++ DS +++ Sbjct: 101 HLHRLRALCDAVVVGVGTAVADNPQLTVR--HVSGRHPARIVIDPYGRMPRDSTLLQDNS 158 Query: 242 LAPVIIVTENDD---PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++I + P F+ + C +++ L R +LVEGGA Sbjct: 159 TRRIVITRTDAHARYPEGVECFQLQPDAKGRLSCAEIRHAL-----REFRCILVEGGAWT 213 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 FI +++D + L + ++IG G Sbjct: 214 LSRFIELKMIDRLHLMIAPLIIGSG 238 >gi|333030069|ref|ZP_08458130.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011] gi|332740666|gb|EGJ71148.1| CMP/dCMP deaminase zinc-binding [Bacteroides coprosuis DSM 18011] Length = 146 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 14 LDTRYIRMA---SIWSENSYCIRRKVGALIVKDKMIISDG---YNGTPSGFENICEDDNN 67 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 68 TTKPYVLHAEANAITKIACSNNSSDGATMYVTAAPCIE------CAKLIIQAGIKRVV 119 >gi|289677917|ref|ZP_06498807.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. syringae FF5] gi|330895911|gb|EGH28196.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. japonica str. M301072PT] Length = 170 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 35 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 90 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 91 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 126 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 127 SQAFLNHRV 135 >gi|154245980|ref|YP_001416938.1| deaminase-reductase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160065|gb|ABS67281.1| bifunctional deaminase-reductase domain protein [Xanthobacter autotrophicus Py2] Length = 282 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 91/189 (48%), Gaps = 26/189 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + ++ S D I S I G + + +H LRA DA++VG+GTV+ADDP L Sbjct: 45 ERPFVVAQLGQSLDGRIATPSGESKYINGPHALDHLHALRADVDAVVVGVGTVVADDPLL 104 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSK-----------IIKTALLAPVIIVTENDDPVL 256 T R + SP R+I+DP + ++ + +T + APV E Sbjct: 105 TVRR--VAGRSPARVIIDPSGRADPAARCFAPDGARRLVLRRTGVAAPVAEGVEVVAMEG 162 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 A AF + +L L RG+T +LVEGGA +F+ + +D++ ++ S Sbjct: 163 AGAF-------------EPAAMLDALAARGLTRILVEGGAHTLSAFLEAGCLDALHVFVS 209 Query: 317 QIVIGEGGI 325 +++G G I Sbjct: 210 PVILGAGRI 218 >gi|194366203|ref|YP_002028813.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia R551-3] gi|194349007|gb|ACF52130.1| CMP/dCMP deaminase zinc-binding [Stenotrophomonas maltophilia R551-3] Length = 174 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +PV D +M AL + P A L+ DG ++G G + ++ HAE Sbjct: 7 VPVHDTDEHWMRHALALAERAQREFDEIPVGAVLVSADGQLLGEGWNLNIASHDPSAHAE 66 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ G+ G+T YVTLEPC+ CA I+ + R+V DP Sbjct: 67 IVAMRSGGKLLANHRLLGSTLYVTLEPCA------MCAMAIVHARVARLVYGASDPKTGA 120 Query: 112 SG 113 G Sbjct: 121 CG 122 >gi|149923193|ref|ZP_01911606.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Plesiocystis pacifica SIR-1] gi|149815967|gb|EDM75483.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Plesiocystis pacifica SIR-1] Length = 165 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 15/91 (16%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVT 75 T + V L+V+DG ++G G + HAEV A+ EA +AR GAT YVT Sbjct: 13 TRGDVPVGALVVRDGKILGVGFNTREQDHDPTGHAEVVAMREACRQARRWRLDGATLYVT 72 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 LEPC P CA ++ I R+V D Sbjct: 73 LEPC------PMCAGTLVNTRIARLVYGAHD 97 >gi|289208092|ref|YP_003460158.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp. K90mix] gi|288943723|gb|ADC71422.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp. K90mix] Length = 146 Score = 45.8 bits (107), Expect = 0.009, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 20/144 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 F+ AAL +R G + +I G ++GRG V + HAE+ ALE AG Sbjct: 4 FLEAALDEAR--TGWDEGGIPIGSVIEHGGRIVGRGHNRRVQSGSAILHAEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + R T Y TL PC+ C+ I+ GI RVVV + G WL Sbjct: 62 QPASVYRECTLYTTLSPCAM------CSGAIVLYGIPRVVV---GENATFMGE-EDWLRS 111 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQ 145 G+ VD + ++ + + A++ R Sbjct: 112 HGVQVDVLQDAACQELMTAFIERH 135 >gi|104782115|ref|YP_608613.1| cytosine deaminase [Pseudomonas entomophila L48] gi|95111102|emb|CAK15822.1| Cytosine deaminase [Pseudomonas entomophila L48] Length = 141 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 20/143 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE 66 M AA+ +R GL + ++V DG +IGRG V H E+ ALE AG + Sbjct: 1 MQAAIDEAR--KGLEEGGIPIGSVLVHDGKIIGRGHNRRVQKGSAILHGEMDALENAGRQ 58 Query: 67 A----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + AT Y TL PC+ C+ I+ GI+RVV+ ++ + Q L + Sbjct: 59 PASVYQQATLYTTLSPCAM------CSGAILLYGIKRVVIGENETFLGEE----QLLKNR 108 Query: 123 GIIVDRMMESEGKIFLHAYLTRQ 145 G+ +D + + + ++ ++ Sbjct: 109 GVALDVRHDHTCRTLMQQFIEKK 131 >gi|294657495|ref|XP_459803.2| DEHA2E11374p [Debaryomyces hansenii CBS767] gi|199432736|emb|CAG88042.2| DEHA2E11374p [Debaryomyces hansenii] Length = 582 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 60/125 (48%), Gaps = 10/125 (8%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67 ++M AL + G T T +V ++V +G V+ G + G HAE ALE+ E+ Sbjct: 435 KYMELALEMAN-KCGETQTQFNVGAVLVNNGEVLATGHSRELPGNTHAEQCALEKYFEQT 493 Query: 68 ------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRV-SGRGLQWL 119 G Y T+EPCS + PC I+E I+ V V +PD+ V + G L Sbjct: 494 GKREVPAGTEIYTTMEPCSLRLSGNLPCVDRILETNIKTCFVGVVEPDIFVKNNSGYTKL 553 Query: 120 SQKGI 124 +++ + Sbjct: 554 TERDV 558 >gi|78485955|ref|YP_391880.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Thiomicrospira crunogena XCL-2] gi|78364241|gb|ABB42206.1| tRNA-adenosine deaminase [Thiomicrospira crunogena XCL-2] Length = 166 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPCSH 81 V ++VKD +I G + A+ HAEV AL +AG E T YVTLEPC Sbjct: 36 VGAVLVKDSKLIAEGWNQTIQAHDPTAHAEVVALRKAGIEEENYRLNDLTLYVTLEPC-- 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 P CA ++ ++R+V+ D Sbjct: 94 ----PMCAGAMVHARLKRLVIAAKD 114 >gi|119715918|ref|YP_922883.1| deaminase-reductase domain-containing protein [Nocardioides sp. JS614] gi|119536579|gb|ABL81196.1| bifunctional deaminase-reductase domain protein [Nocardioides sp. JS614] Length = 231 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 10/183 (5%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R + L +S D + A + ++ ++V +RA+SDAI+VG TV D+P L Sbjct: 4 RPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNPRLL 63 Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R ++ SP+++ + +L + T ++ T P A + Sbjct: 64 VRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPE-ARSR 122 Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ R ++++ L RGV L+VEGG + F+ L D + L + Sbjct: 123 LGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAPFF 182 Query: 320 IGE 322 +G+ Sbjct: 183 VGD 185 >gi|241764554|ref|ZP_04762572.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN] gi|241365998|gb|EER60615.1| CMP/dCMP deaminase zinc-binding [Acidovorax delafieldii 2AN] Length = 454 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 25/150 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++VKDG VI G V ++ HAE+ AL A E+ G T YVTLEPC+ Sbjct: 19 VGAVVVKDGQVIATGRNAPVQSHDPTAHAEIVALRAAAEQLGNYRLDGCTLYVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA- 140 C+ ++ + RVV DP +G L +++ + +G + H Sbjct: 79 ------CSGAMLHARVPRVVFGAVDPKTGAAGSVLDLFGY--TVLNHHTQVQGGVLAHDC 130 Query: 141 -------YLTRQVEKRSHITLKIAVSQDNM 163 + R+ ++RS + + D + Sbjct: 131 GALLSTFFRQRRAQQRSEAQARHPLRDDAL 160 >gi|218768019|ref|YP_002342531.1| putative cytosine deaminase [Neisseria meningitidis Z2491] gi|121052027|emb|CAM08336.1| putative cytosine deaminase [Neisseria meningitidis Z2491] Length = 239 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 28/138 (20%) Query: 2 PVSSFDAR-----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F + FM ALR + V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQEEMEHFMCEALRQAEQSAA--DGEIPVGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG E + G Y+TLEPC+ CA +I+ ++RV+ Sbjct: 137 NVSRHAEINALAQAGREMQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 GEPKTGAAGSIVNLFADK 208 >gi|302185724|ref|ZP_07262397.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. syringae 642] Length = 169 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRQAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|17230776|ref|NP_487324.1| cytosine deaminase [Nostoc sp. PCC 7120] gi|17132379|dbj|BAB74983.1| cytosine deaminase [Nostoc sp. PCC 7120] Length = 143 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 14/99 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA++ ++ G + ++VKDG ++GRG V HAE+ L AG Sbjct: 4 FMQAAIQEAKQ--GRQEGGIPIGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLRNAGR 61 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 RG T Y TL PC CA +++ GI++V+V Sbjct: 62 IGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIV 94 >gi|329957030|ref|ZP_08297598.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides clarus YIT 12056] gi|328523787|gb|EGF50879.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides clarus YIT 12056] Length = 145 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPC------IECAKLIIQAGIKRVV 117 >gi|85857921|ref|YP_460123.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB] gi|85721012|gb|ABC75955.1| tRNA-specific adenosine deaminase [Syntrophus aciditrophicus SB] Length = 187 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D R+M AL +R + + + +IV++ VI R V + HAE+ A+ E Sbjct: 28 DERWMRLALEEAR--LAASEGEVPIGAVIVRENEVIARSHNMPVDRHDPTAHAEILAIRE 85 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A E+ + G T YVTLEPC CA I++ ++R+V DP Sbjct: 86 AAEKMKNYRLTGMTLYVTLEPCIM------CAGAILQARLKRLVYGTGDP 129 >gi|54025280|ref|YP_119522.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152] gi|54016788|dbj|BAD58158.1| putative pyrimidine deaminase [Nocardia farcinica IFM 10152] Length = 149 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 8/121 (6%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCP-HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRS 85 SV +IV DGI I G + HAE AL++ AT Y TLEPCS + Sbjct: 26 SVGAVIVADGIEIASGYSRETDLKVHAEEAALDKLDPHDPRLSRATIYSTLEPCSERATT 85 Query: 86 P--PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAY 141 PC ++ GI RVV+ +P V+ G++ L Q G+ V + E +E + ++ + Sbjct: 86 TRLPCTDRVLAVGIPRVVIAWREPATFVADCVGVEKLEQSGVEVVELRELAEAAMAMNRH 145 Query: 142 L 142 L Sbjct: 146 L 146 >gi|189462145|ref|ZP_03010930.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136] gi|189431118|gb|EDV00103.1| hypothetical protein BACCOP_02827 [Bacteroides coprocola DSM 17136] Length = 144 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M A + W V LIVK+ ++I G Y G P Sbjct: 11 LDKRYMQMA---TIWSENSYCNRRKVGALIVKNKMIISDG---YNGTPAGFENVCEDEHG 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 ITKPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|58581831|ref|YP_200847.1| hypothetical protein XOO2208 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84623733|ref|YP_451105.1| hypothetical protein XOO_2076 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188576614|ref|YP_001913543.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae PXO99A] gi|58426425|gb|AAW75462.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|84367673|dbj|BAE68831.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188521066|gb|ACD59011.1| tRNA-specific adenosine deaminase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 170 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL + P A ++ +G V+G G + ++ HAE+ Sbjct: 11 PHAAIDVHWMQHALHLAECAERDHDEIPVGALIVGAEGNVLGEGWNFNIASHDPSAHAEI 70 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ +AG G T YVTLEPC+ CA +I I RVV DP Sbjct: 71 VAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 124 Query: 113 G 113 G Sbjct: 125 G 125 >gi|330975928|gb|EGH75994.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 169 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|160887077|ref|ZP_02068080.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483] gi|237721349|ref|ZP_04551830.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4] gi|260171610|ref|ZP_05758022.1| deoxycytidylate deaminase [Bacteroides sp. D2] gi|293369429|ref|ZP_06616014.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CMC 3f] gi|299148576|ref|ZP_07041638.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 3_1_23] gi|315919924|ref|ZP_07916164.1| deoxycytidylate deaminase [Bacteroides sp. D2] gi|156107488|gb|EDO09233.1| hypothetical protein BACOVA_05093 [Bacteroides ovatus ATCC 8483] gi|229449145|gb|EEO54936.1| deoxycytidylate deaminase [Bacteroides sp. 2_2_4] gi|292635596|gb|EFF54103.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CMC 3f] gi|298513337|gb|EFI37224.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 3_1_23] gi|313693799|gb|EFS30634.1| deoxycytidylate deaminase [Bacteroides sp. D2] Length = 149 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 10 LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 64 LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|145229091|ref|XP_001388854.1| cytosine deaminase [Aspergillus niger CBS 513.88] gi|134054953|emb|CAK36962.1| unnamed protein product [Aspergillus niger] Length = 148 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAG----EEARGATAYVTLEPCS 80 P ACL+ KDG ++GRG + G P HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGACLVSKDGKILGRGHNMRVQKGSPVLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I ++RVVV + + G +L +G V + +E K + Sbjct: 84 M------CTGACILYKVKRVVVGENKSFM----GGEDYLKSRGKEVVVLDNAECKQLMEK 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FMKEKPE 140 >gi|282859489|ref|ZP_06268594.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella bivia JCVIHMP010] gi|282587717|gb|EFB92917.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella bivia JCVIHMP010] Length = 144 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 8 LDYRY----LRMARIWAENSYCKRRQVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 60 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L +G + G+T YVT PC CA+ II+ GI+R+V Sbjct: 61 NITKPYVLHAEANAITKLARSGNNSEGSTLYVTASPCIE------CAKLIIQAGIKRLV 113 >gi|262402782|ref|ZP_06079343.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586] gi|262351564|gb|EEZ00697.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586] Length = 170 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 70/168 (41%), Gaps = 29/168 (17%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S+ D +FM A+ + L V ++V++G +I G +T HAE++ Sbjct: 7 STQDEQFMRRAIELAAQAEALGEV--PVGAVLVQEGKIIAEGWNCSITHQDATAHAEIEV 64 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + EAG+ T YVTLEPC P CA ++ ++R+V PD++ Sbjct: 65 IREAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGA--PDLKAGAA 116 Query: 115 GL-------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 G Q + ++E E + L A+ R +R I K Sbjct: 117 GTVMDLFNSQASYHYATVEKGLLEEECRTQLQAFFQR---RRKEIKAK 161 >gi|224023823|ref|ZP_03642189.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM 18228] gi|224017045|gb|EEF75057.1| hypothetical protein BACCOPRO_00539 [Bacteroides coprophilus DSM 18228] Length = 146 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M A+ W V LIVK+ ++I G Y G P Sbjct: 12 LDKRYMRMAMI---WAENSYCNRRKVGALIVKNKMIISDG---YNGTPAGFENVCEDEHG 65 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 66 ITIPYVLHAEANAITKIARSNNSSEGATLYVTASPCIE------CAKLIIQAGIKRVV 117 >gi|298488260|ref|ZP_07006293.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157199|gb|EFH98286.1| tRNA-specific adenosine-34 deaminase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 169 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G +IGRG ++A HAE+ A+ +A G+T YVTLEPCS Sbjct: 34 VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLSGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ + RVV +P + Q+ SQ Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127 >gi|225010991|ref|ZP_03701457.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C] gi|225004898|gb|EEG42854.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-3C] Length = 146 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 36/152 (23%) Query: 1 MPVSSFDARFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53 M ++ A LR + W V ++VKD ++I G Y G P Sbjct: 1 MTTEDKQEKYDQAYLRMAAEWGKLSYCKRKQVGAIVVKDRMIISDG---YNGTPSGFENF 57 Query: 54 -------------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 HAE AL + + + + GAT Y+TL PC C++ I + GI Sbjct: 58 CEDETGYTKWYVLHAEANALSKVAASTQSSEGATLYITLSPC------KECSKLIHQSGI 111 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 +RVV D G+ +L++ G+ + M Sbjct: 112 KRVVYAKAYRD----SSGIDFLAKAGVAISHM 139 >gi|66044515|ref|YP_234356.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. syringae B728a] gi|63255222|gb|AAY36318.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. syringae B728a] Length = 169 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|85712706|ref|ZP_01043751.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145] gi|85693438|gb|EAQ31391.1| Cytosine/adenosine deaminase putative [Idiomarina baltica OS145] Length = 179 Score = 45.8 bits (107), Expect = 0.011, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D +M AL + H V ++V + +++G G +T HAE QA+ Sbjct: 16 TTDEIYMQRALELA--HKAADEDEVPVGAVLVLNDMIVGEGYNQVITLSDPSAHAEAQAI 73 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AG+ +T YVTLEPC+ CA I ++R+V DP +G Sbjct: 74 RAAGKNVDNYRLTDSTLYVTLEPCAM------CAGLITHARVKRLVFGAPDPRTGATGTA 127 Query: 116 LQWLSQ 121 ++ L+ Sbjct: 128 IEVLNH 133 >gi|166712352|ref|ZP_02243559.1| hypothetical protein Xoryp_13070 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 170 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 52/121 (42%), Gaps = 15/121 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ D +M AL + P A ++ +G V+G G + ++ HAE+ Sbjct: 11 PHAAIDVHWMQHALHLAECAERDHDEIPVGALILGAEGNVLGEGWNFNIASHDPSAHAEI 70 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ +AG G T YVTLEPC+ CA +I I RVV DP Sbjct: 71 VAMRDAGRRLSNHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGAC 124 Query: 113 G 113 G Sbjct: 125 G 125 >gi|29349668|ref|NP_813171.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482] gi|253569961|ref|ZP_04847370.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6] gi|298383932|ref|ZP_06993493.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 1_1_14] gi|29341578|gb|AAO79365.1| deoxycytidylate deaminase [Bacteroides thetaiotaomicron VPI-5482] gi|251840342|gb|EES68424.1| deoxycytidylate deaminase [Bacteroides sp. 1_1_6] gi|298263536|gb|EFI06399.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. 1_1_14] Length = 149 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 10 LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 64 LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|107103282|ref|ZP_01367200.1| hypothetical protein PaerPA_01004351 [Pseudomonas aeruginosa PACS2] Length = 182 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++V++G +IGRG ++++ HAE+ A+ A EA G+T YVTLEPCS Sbjct: 50 VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 C+ ++ I+R+V +P SG +ES G+ F + Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145 Query: 142 LTRQV 146 L +V Sbjct: 146 LNHRV 150 >gi|186686613|ref|YP_001869809.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] gi|186469065|gb|ACC84866.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] Length = 143 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 14/100 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64 FM AA++ ++ G + ++VKDG ++GRG G P HAE+ L AG Sbjct: 3 EFMEAAIQEAKQ--GREEGGIPIGSVLVKDGKILGRGHNKRVQDGDPVTHAEIDCLRNAG 60 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 RG T Y TL PC CA +++ GI++V+V Sbjct: 61 RVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVIV 94 >gi|19075322|ref|NP_587822.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe 972h-] gi|74627116|sp|P87241|RIB2_SCHPO RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase gi|2213559|emb|CAB09771.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe] Length = 405 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Query: 31 VACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-----AGEEARGATAYVTLEPCS-HYG 83 V +IV++G ++ G + G HAE A+E+ + GA Y T+EPCS Sbjct: 281 VGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLKNPTDSLEGAIMYSTMEPCSKRLS 340 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + C I++ VV+ +PD+ V G+ L + GI+V Sbjct: 341 KKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLKKAGIVV 383 >gi|332305596|ref|YP_004433447.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172925|gb|AEE22179.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 162 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++VKD VIG G + HAE+QA+ +AGE + G T YVTLEPC+ Sbjct: 28 VGAVLVKDQQVIGEGWNQSIMLNDPSAHAEMQAIRQAGEFIQNYRLIGTTLYVTLEPCT- 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I R+V D +G Sbjct: 87 -----MCAGLLVHSRIERLVFGAHDAKTGAAG 113 >gi|237715563|ref|ZP_04546044.1| deoxycytidylate deaminase [Bacteroides sp. D1] gi|262408572|ref|ZP_06085118.1| ComE operon protein 2 [Bacteroides sp. 2_1_22] gi|294647040|ref|ZP_06724653.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CC 2a] gi|294809884|ref|ZP_06768560.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides xylanisolvens SD CC 1b] gi|229444272|gb|EEO50063.1| deoxycytidylate deaminase [Bacteroides sp. D1] gi|262353437|gb|EEZ02531.1| ComE operon protein 2 [Bacteroides sp. 2_1_22] gi|292637617|gb|EFF56022.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides ovatus SD CC 2a] gi|294442913|gb|EFG11704.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides xylanisolvens SD CC 1b] gi|295086823|emb|CBK68346.1| Deoxycytidylate deaminase [Bacteroides xylanisolvens XB1A] Length = 149 Score = 45.4 bits (106), Expect = 0.012, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 10 LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 64 LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|298373394|ref|ZP_06983383.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274446|gb|EFI15998.1| cytidine/deoxycytidylate deaminase family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 141 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+M R +R W V L+VKD ++I G Y G P Sbjct: 10 LDERYM----RMARIWAENSYCLRRKVGALLVKDKMIISDG---YNGTPSGFENCCEDEH 62 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GIRRVV Sbjct: 63 NNSKPYVLHAEANAISKVARSNNSSDGATLYVTASPCME------CAKLIIQAGIRRVV 115 >gi|291515202|emb|CBK64412.1| Deoxycytidylate deaminase [Alistipes shahii WAL 8301] Length = 145 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 38/142 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 10 QLDMRYLRMA---SIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDDE 63 Query: 54 --------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE A+ + + A G+T Y+T PC C++ II+ GIRRVV Sbjct: 64 GHTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPCIE------CSKLIIQAGIRRVVY 117 Query: 103 CVDDPDVRVSGRGLQWLSQKGI 124 D R S GL L + GI Sbjct: 118 ---SEDYR-SEEGLNLLRRVGI 135 >gi|251781204|ref|ZP_04824120.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081651|gb|EES47712.1| tRNA-specific adenosine deaminase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 152 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 52/111 (46%), Gaps = 21/111 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 + +IVKD IVI + T HAE+ A+ EA E+ R G YVTLEPC+ Sbjct: 22 IGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREASKFLEDWRLNGTEMYVTLEPCTM 81 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 C II+ I ++ + + D+ G S +I DRM+ES Sbjct: 82 ------CTSAIIQSRISKLHIGTFNKDMGACG------SIINLIDDRMLES 120 >gi|298481407|ref|ZP_06999599.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. D22] gi|298272271|gb|EFI13840.1| cytidine/deoxycytidylate deaminase family protein [Bacteroides sp. D22] Length = 149 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 10 LDKRYIRMA---SIWAENSYCQRRKVGALIVKDKMIISDG---YNGTPSGFENVCEDENN 63 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 64 LTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|15598962|ref|NP_252456.1| hypothetical protein PA3767 [Pseudomonas aeruginosa PAO1] gi|116051766|ref|YP_789395.1| hypothetical protein PA14_15680 [Pseudomonas aeruginosa UCBPP-PA14] gi|218889954|ref|YP_002438818.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa LESB58] gi|254236673|ref|ZP_04929996.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254242457|ref|ZP_04935779.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296387724|ref|ZP_06877199.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa PAb1] gi|313109181|ref|ZP_07795150.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa 39016] gi|9949937|gb|AAG07154.1|AE004795_6 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115586987|gb|ABJ13002.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa UCBPP-PA14] gi|126168604|gb|EAZ54115.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126195835|gb|EAZ59898.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218770177|emb|CAW25939.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa LESB58] gi|310881652|gb|EFQ40246.1| putative Cytosine/adenosine deaminase [Pseudomonas aeruginosa 39016] Length = 182 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++V++G +IGRG ++++ HAE+ A+ A EA G+T YVTLEPCS Sbjct: 50 VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 C+ ++ I+R+V +P SG +ES G+ F + Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145 Query: 142 LTRQV 146 L +V Sbjct: 146 LNHRV 150 >gi|253998683|ref|YP_003050746.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4] gi|253985362|gb|ACT50219.1| CMP/dCMP deaminase zinc-binding [Methylovorus sp. SIP3-4] Length = 175 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V L+V DG +IGRG+ A + HAE+QA+ EA G T YVTLEPC+ Sbjct: 38 VGALVVLDGKIIGRGMNAPIGSHDPTAHAEIQAMREAAAAIGNYRLVGCTLYVTLEPCAM 97 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 C+ I I R+V DP G + +++ Sbjct: 98 ------CSGAIQHARIARLVYGARDPKTGSCGSVIDLMAE 131 >gi|227499915|ref|ZP_03930008.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098] gi|227218024|gb|EEI83297.1| nucleoside deaminase [Anaerococcus tetradius ATCC 35098] Length = 169 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/114 (33%), Positives = 50/114 (43%), Gaps = 17/114 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 S D FM A+ +R + V +IV DG +IGRG HAE+ Sbjct: 11 KFSEEDYFFMGEAINEARLARFIEEV--PVGAVIVLDGKIIGRGHNYTFKGKSALKHAEI 68 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A++EA AT YVT+EPCS CA II I R+V+ + D Sbjct: 69 MAIKEASAYIDDFRLERATMYVTMEPCS------MCAGAIINSRIDRLVIGIRD 116 >gi|330950762|gb|EGH51022.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae Cit 7] Length = 167 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVLVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKTLDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|81427949|ref|YP_394948.1| putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K] gi|78609590|emb|CAI54636.1| Putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K] Length = 172 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81 + +IVKDG +IGRG A HAE+ A++EA +VTLEPC Sbjct: 30 IGAVIVKDGQIIGRGHNIREHAQDATLHAEIIAIQEACMVEKSWRLEDTAIFVTLEPC-- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK-----GIIVDRMMESEGKI 136 P CA II I V DP V+G + L+ K +V + E+E Sbjct: 88 ----PMCAGAIINSRIPNVYFGASDPKAGVTGTLMNLLTDKRFNHQATVVAGVREAECAA 143 Query: 137 FLHAYL 142 L + Sbjct: 144 LLQTFF 149 >gi|49081784|gb|AAT50292.1| PA3767 [synthetic construct] Length = 183 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++V++G +IGRG ++++ HAE+ A+ A EA G+T YVTLEPCS Sbjct: 50 VGAVLVREGEIIGRGFNRPISSHDPSAHAEMLAIRMAAAEAGNYRLPGSTLYVTLEPCSM 109 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 C+ ++ I+R+V +P SG +ES G+ F + Sbjct: 110 ------CSGLLVHARIQRLVYGTVEPK---SG---------------AVESRGRFFEQEH 145 Query: 142 LTRQV 146 L +V Sbjct: 146 LNHRV 150 >gi|270294283|ref|ZP_06200485.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275750|gb|EFA21610.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 152 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDRRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC C++ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 117 >gi|30248454|ref|NP_840524.1| cytidine and deoxycytidylate deaminase zinc-binding region [Nitrosomonas europaea ATCC 19718] gi|30138340|emb|CAD84348.1| Cytidine and deoxycytidylate deaminase zinc-binding region [Nitrosomonas europaea ATCC 19718] Length = 167 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +PV + D FM AL +R V + V ++V++ ++G G VT HAE Sbjct: 8 VPVQTEDEYFMRQALDLAR--VAGAAGEVPVGAVMVRESRIVGCGHNCPVTTVDPTAHAE 65 Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 ++AL +A G T YVTLEPC C + I R+V +DP V Sbjct: 66 IRALRDAASRVGNYRLPGCTLYVTLEPCVM------CIGAMFHARITRLVYAANDPKTGV 119 Query: 112 SG 113 G Sbjct: 120 CG 121 >gi|160890970|ref|ZP_02071973.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492] gi|317481497|ref|ZP_07940562.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides sp. 4_1_36] gi|156859191|gb|EDO52622.1| hypothetical protein BACUNI_03415 [Bacteroides uniformis ATCC 8492] gi|316902343|gb|EFV24232.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides sp. 4_1_36] Length = 153 Score = 45.4 bits (106), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 12 ALDRRYIRMA---SIWAENSYCQRRQVGALIVKDKMIISDG---YNGTPSGFENVCEDEN 65 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC C++ II+ GI+RVV Sbjct: 66 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 118 >gi|146416095|ref|XP_001484017.1| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC 6260] Length = 611 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE------ 62 FM AL + G T T +V ++V +G V+ G + G HAE ALE+ Sbjct: 459 FMELALSEAE-KCGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517 Query: 63 AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQWLS 120 + E G Y T+EPCS + PC Q I++ I+ V V +PD V L+ LS Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577 Query: 121 QKGI 124 G+ Sbjct: 578 DNGV 581 >gi|295402713|ref|ZP_06812655.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius C56-YS93] gi|312109168|ref|YP_003987484.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1] gi|294975244|gb|EFG50880.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius C56-YS93] gi|311214269|gb|ADP72873.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1] Length = 161 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+ G VI R TA HAE+ A++EA ++A AT YVTLEPC+ Sbjct: 26 IGAIIVQGGNVIARAHNLRETAQRAIAHAEILAIDEACKKAGSWRLEDATLYVTLEPCAM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I+RVV DP +G + L + + ++ +++ E Sbjct: 86 ------CAGAIVLARIKRVVFGASDPKGGCAGTLMNLLQEGRFNHQAEVIGGVLQEECGQ 139 Query: 137 FLHAYLTRQVEKRSHI 152 L + + EK+ +I Sbjct: 140 MLSNFFRKLREKKKNI 155 >gi|325264602|ref|ZP_08131332.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp. D5] gi|324030264|gb|EGB91549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp. D5] Length = 159 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A+R ++ L + C+IV +IGRG HAE+ A+ Sbjct: 4 DEKYMKEAIRQAKKAYALEEV--PIGCVIVYQDKIIGRGYNRRTIDKNPLAHAELTAIRR 61 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC C+ II+ ++RVVV +P +G L Sbjct: 62 ASKKLNDWRLEECTLYVTLEPCQM------CSGAIIQARVQRVVVGCMNPKAGCAGSILN 115 Query: 118 WLSQK 122 L K Sbjct: 116 LLEMK 120 >gi|256820204|ref|YP_003141483.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271] gi|256581787|gb|ACU92922.1| CMP/dCMP deaminase zinc-binding [Capnocytophaga ochracea DSM 7271] Length = 146 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 38/143 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 +D +M A+ +++ S V +IVKD ++I G Y G P Sbjct: 12 YDKAYMCMAMEWAKLSY---SQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEEG 65 Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + + GAT Y+T+ PC C++ I + GI+RVV Sbjct: 66 NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119 Query: 104 VDDPDVRVSGRGLQWLSQKGIIV 126 D GL +L + G+ V Sbjct: 120 EGYRD----NEGLAFLEKAGVEV 138 >gi|258648600|ref|ZP_05736069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella tannerae ATCC 51259] gi|260851385|gb|EEX71254.1| cytidine/deoxycytidylate deaminase family protein [Prevotella tannerae ATCC 51259] Length = 145 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 50/119 (42%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V LIVKD ++I G Y G P Sbjct: 10 LDNRY----LRMARIWSENSYCKRRQVGALIVKDKMIISDG---YNGTPSGFENQCEDEL 62 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + +G + GAT YVT PC C++ II+ GI+RV+ Sbjct: 63 NITKPYVLHAEANAITKIARSGNNSDGATLYVTDAPCIE------CSKLIIQAGIKRVI 115 >gi|150005156|ref|YP_001299900.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482] gi|212694623|ref|ZP_03302751.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855] gi|237711112|ref|ZP_04541593.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA] gi|237727465|ref|ZP_04557946.1| deoxycytidylate deaminase [Bacteroides sp. D4] gi|254883290|ref|ZP_05256000.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA] gi|265750698|ref|ZP_06086761.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA] gi|294777766|ref|ZP_06743212.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides vulgatus PC510] gi|319642664|ref|ZP_07997310.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A] gi|149933580|gb|ABR40278.1| deoxycytidylate deaminase [Bacteroides vulgatus ATCC 8482] gi|212663124|gb|EEB23698.1| hypothetical protein BACDOR_04153 [Bacteroides dorei DSM 17855] gi|229434321|gb|EEO44398.1| deoxycytidylate deaminase [Bacteroides dorei 5_1_36/D4] gi|229454956|gb|EEO60677.1| deoxycytidylate deaminase [Bacteroides sp. 9_1_42FAA] gi|254836083|gb|EET16392.1| deoxycytidylate deaminase [Bacteroides sp. 4_3_47FAA] gi|263237594|gb|EEZ23044.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_33FAA] gi|294448354|gb|EFG16908.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides vulgatus PC510] gi|317385752|gb|EFV66685.1| deoxycytidylate deaminase [Bacteroides sp. 3_1_40A] Length = 144 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 LDKRYIRMA---SIWAENSYCERRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDNG 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|313668625|ref|YP_004048909.1| cytosine deaminase [Neisseria lactamica ST-640] gi|313006087|emb|CBN87548.1| putative cytosine deaminase (EC 3.5.4.1) [Neisseria lactamica 020-06] Length = 239 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 28/138 (20%) Query: 2 PVSSFD-----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC---- 52 PV++F A FM AL ++ L P V +IV DG +I +A+ C Sbjct: 82 PVAAFPPQGEMAHFMGLALEQAKLS-ALMGEIP-VGAVIVSDGKIIA---SAHNTCIADC 136 Query: 53 ---PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE+ AL +AG + + G Y+TLEPC+ CA +I+ ++RV+ Sbjct: 137 NVSRHAEINALAQAGSKIQNYRLDGCDIYITLEPCAM------CASALIQARVKRVIYGA 190 Query: 105 DDPDVRVSGRGLQWLSQK 122 +P +G + + K Sbjct: 191 GEPKTGAAGSIVNLFADK 208 >gi|329962142|ref|ZP_08300153.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides fluxus YIT 12057] gi|328530790|gb|EGF57648.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bacteroides fluxus YIT 12057] Length = 146 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCIRRQVGALIVKDQMIISDG---YNGTPAGFENICEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CAKLIIQAGIKRVV 117 >gi|237800069|ref|ZP_04588530.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|237806398|ref|ZP_04593102.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022924|gb|EGI02981.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. oryzae str. 1_6] gi|331027511|gb|EGI07566.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. oryzae str. 1_6] Length = 168 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V +G +IGRG CP HAE+ A+ E+ + G+T YVTLE Sbjct: 34 VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRESAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|163786644|ref|ZP_02181092.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1] gi|159878504|gb|EDP72560.1| deoxycytidylate deaminase [Flavobacteriales bacterium ALC-1] Length = 143 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 61/144 (42%), Gaps = 36/144 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 R+ A LR ++ W V LIVKD ++I G Y G P Sbjct: 8 RYDKAYLRIAKEWGKLSHCKRKQVGALIVKDRMIISDG---YNGTPTGFENYCEDDEGYT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + +GAT Y+TL PC C++ I + GI RVV Sbjct: 65 KWYVLHAEANAILKVASSTQSCKGATLYITLSPCK------ECSKLIHQAGIIRVVYQNG 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129 D GLQ+L++ GI ++ + Sbjct: 119 YKD----DSGLQFLAKAGIELEHI 138 >gi|330985033|gb|EGH83136.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 169 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G +IGRG ++A HAE+ A+ +A G+T YVTLEPCS Sbjct: 34 VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAASALDNYRLPGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ + RVV +P + Q+ SQ Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127 >gi|146302806|ref|YP_001190122.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera sedula DSM 5348] gi|145701056|gb|ABP94198.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Metallosphaera sedula DSM 5348] Length = 206 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K + H+LRAQ DA+++G T D+P LT L +P+R+I+ L KI Sbjct: 32 KIRQHMLRAQVDAVMIGARTARVDNPRLT--LKYYTGKNPIRVIVTNSGDLDPGLKIFN- 88 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + ++ T N D + L + + C + L V +++VEGG + Sbjct: 89 -IPPSTVVYTRNLSDSLKELTKKGVYVRTFSTLCDAMADLYKTF---SVRTVMVEGGGKL 144 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG 323 S + VD + + S V G G Sbjct: 145 NWSLMKEGCVDEVRVTVSPRVFGSG 169 >gi|71736711|ref|YP_273597.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|289625949|ref|ZP_06458903.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647891|ref|ZP_06479234.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. aesculi str. 2250] gi|71557264|gb|AAZ36475.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|320323193|gb|EFW79282.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329536|gb|EFW85525.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330867510|gb|EGH02219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330874802|gb|EGH08951.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 169 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G +IGRG ++A HAE+ A+ +A G+T YVTLEPCS Sbjct: 34 VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ + RVV +P + Q+ SQ Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127 >gi|313157603|gb|EFR57018.1| cytidine and deoxycytidylate deaminase zinc-binding region [Alistipes sp. HGB5] Length = 145 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 46/151 (30%), Positives = 61/151 (40%), Gaps = 41/151 (27%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 D R+ LR +R W V LIVKD ++I G Y G P Sbjct: 10 QLDIRY----LRMARIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPSGFENICEDE 62 Query: 54 ---------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + A G+T Y+T PC C++ II+ GI+RVV Sbjct: 63 NGHTKPYVLHAEANAITKVAKSANNCDGSTLYITAAPC------IECSKLIIQAGIKRVV 116 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131 C + S GL L + GI V ME Sbjct: 117 YC----EEYRSEEGLNLLRKVGIECVQHAME 143 >gi|190574881|ref|YP_001972726.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas maltophilia K279a] gi|190012803|emb|CAQ46432.1| putative cytidine and deoxycytidylate deaminase [Stenotrophomonas maltophilia K279a] Length = 174 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +PV D +M AL + P A L+ DG ++G G + ++ HAE Sbjct: 7 VPVHDADEHWMRHALALAERAQREFDEIPVGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ G+ G+T YVTLEPC+ CA I+ + R+V DP Sbjct: 67 IVAMRAGGKLLANHRLLGSTLYVTLEPCA------MCAMAIVHARVSRLVYGASDPKTGA 120 Query: 112 SG 113 G Sbjct: 121 CG 122 >gi|190347088|gb|EDK39300.2| hypothetical protein PGUG_03398 [Meyerozyma guilliermondii ATCC 6260] Length = 611 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 10/124 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE------ 62 FM AL + G T T +V ++V +G V+ G + G HAE ALE+ Sbjct: 459 FMELALSEAE-KCGETQTQFNVGAVLVHEGEVLATGHSRELPGNTHAEQCALEKYFKASN 517 Query: 63 AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS-GRGLQWLS 120 + E G Y T+EPCS + PC Q I++ I+ V V +PD V L+ LS Sbjct: 518 STEVPEGTVIYTTMEPCSFRLSGNEPCVQRILKTCIKTCFVGVIEPDTFVKDNSSLRQLS 577 Query: 121 QKGI 124 G+ Sbjct: 578 DNGV 581 >gi|167753214|ref|ZP_02425341.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216] gi|167659145|gb|EDS03275.1| hypothetical protein ALIPUT_01485 [Alistipes putredinis DSM 17216] Length = 144 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 57/143 (39%), Gaps = 40/143 (27%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 D R+ LR +R W V LIVKD ++I G Y G P Sbjct: 10 QLDMRY----LRMARIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPAGFENICEDE 62 Query: 54 ---------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + A G+T Y+T PC C++ II+ GIRRVV Sbjct: 63 TGKTKSYVLHAEANAITKVAKSANNCDGSTLYITAAPC------IECSKLIIQAGIRRVV 116 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124 D S GL L + GI Sbjct: 117 Y----SDDYRSEEGLDLLRRVGI 135 >gi|240143386|ref|ZP_04741987.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82] gi|257204654|gb|EEV02939.1| putative deoxycytidylate deaminase [Roseburia intestinalis L1-82] gi|291537131|emb|CBL10243.1| Deoxycytidylate deaminase [Roseburia intestinalis M50/1] gi|291540369|emb|CBL13480.1| Deoxycytidylate deaminase [Roseburia intestinalis XB6B4] Length = 161 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 44/165 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM A+ G+ S +P+ AC++ +D ++ G + GC Sbjct: 10 SWDEYFMGVAVL-----SGMRSKDPNTQVGACIVSEDHKILSMGYNGFPTGCSDDEFPWE 64 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 H+E+ A L G GAT YVTL PC+ CA+ II+ GIR Sbjct: 65 REGEPLENKYFYTTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIR 118 Query: 99 RVVVCVDD----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 R+V D P V S + L+ G+++ R + +I L Sbjct: 119 RIVYDSDKYETTPAVVASKK---MLNAAGVVLQRYEHTNRRIELE 160 >gi|239616728|ref|YP_002940050.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1] gi|239505559|gb|ACR79046.1| CMP/dCMP deaminase zinc-binding [Kosmotoga olearia TBF 19.5.1] Length = 170 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 29/58 (50%), Positives = 33/58 (56%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ II GI+RVV VD PD Sbjct: 97 HAEQNALSQAAKFGISTDGATIYVTHKPCS------ICARLIINAGIKRVVYDVDYPD 148 >gi|330969043|gb|EGH69109.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. aceris str. M302273PT] Length = 169 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 59/129 (45%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G ++GRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVVVQNGEIVGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ +S+G+ F Sbjct: 90 PCSM------CAGLIVHSRVTRVVYGALEP-------------KAGIV-----QSQGQFF 125 Query: 138 LHAYLTRQV 146 A+L +V Sbjct: 126 SQAFLNHRV 134 >gi|319901309|ref|YP_004161037.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P 36-108] gi|319416340|gb|ADV43451.1| CMP/dCMP deaminase zinc-binding protein [Bacteroides helcogenes P 36-108] Length = 145 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENICEDEN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC C++ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSNGATMYVTASPCIE------CSKLIIQAGIKRVV 117 >gi|298293557|ref|YP_003695496.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506] gi|296930068|gb|ADH90877.1| CMP/dCMP deaminase zinc-binding protein [Starkeya novella DSM 506] Length = 158 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 10/79 (12%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM A+ SR + + P C+IVKDG+++G G V + H EV+A+ +AG Sbjct: 7 FMRRAIEISREKMRSDGSAP-FGCVIVKDGVIVGEGVNNVVNNHDATSHGEVEAIRDAGR 65 Query: 66 EAR-----GATAYVTLEPC 79 + G Y T EPC Sbjct: 66 RLKSWDLSGCELYTTCEPC 84 >gi|145589597|ref|YP_001156194.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048003|gb|ABP34630.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 152 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 57/133 (42%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAE 56 M + D +FM A+ ++ L P V ++V+DG VI + ++ + HAE Sbjct: 1 MSQAELDQQFMQQAIEQAKL-AALAGEVP-VGAVVVRDGKVISSAFNKPISTHDPSAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL A + G T YVTLEPC C+ ++ + RVV DP Sbjct: 59 MLALRAAAQSEENYRLPGTTLYVTLEPCVM------CSGAMLHARLDRVVYGAADPKTGA 112 Query: 112 SGRGLQWLSQKGI 124 +G S K I Sbjct: 113 AGSVFDVFSSKQI 125 >gi|330968078|gb|EGH68338.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. actinidiae str. M302091] Length = 169 Score = 45.1 bits (105), Expect = 0.016, Method: Compositional matrix adjust. Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 31/140 (22%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A G+T YVTLE Sbjct: 34 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM------- 130 PCS CA I+ + RVV +P + Q+ SQ G + R++ Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGGVLG 142 Query: 131 ESEGKIFLHAYLTRQVEKRS 150 E G + + R+ EK + Sbjct: 143 EECGAMLSEFFRMRRAEKEA 162 >gi|227891209|ref|ZP_04009014.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741] gi|227867083|gb|EEJ74504.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741] Length = 169 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 +FM AL ++ + + C+IVKDG +IGRG + HAE+ A+EEA Sbjct: 13 KFMKEALFEAKLAAKIGEV--PIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 70 Query: 65 EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E +VTLEPC P C+ II I V D G + L Sbjct: 71 ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDSKAGTVGTLMNLL 124 Query: 120 S 120 Sbjct: 125 E 125 >gi|325268984|ref|ZP_08135605.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM 16608] gi|324988605|gb|EGC20567.1| cytidine/deoxycytidylate deaminase [Prevotella multiformis DSM 16608] Length = 175 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 51/121 (42%), Gaps = 36/121 (29%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 ++ D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 23 TAVDYRY----LRMARIWAENSYCRRRQVGALVVKDKMIISDG---YNGTPSGFENVCED 75 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L +G + G+T YVT PC C++ II+ GIRRV Sbjct: 76 EAGVTKPYVLHAEANAITKLARSGNNSDGSTLYVTASPCIE------CSKLIIQAGIRRV 129 Query: 101 V 101 V Sbjct: 130 V 130 >gi|266621805|ref|ZP_06114740.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479] gi|288866494|gb|EFC98792.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479] Length = 165 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M AA+ +R G P + C+IV + +I RG HAE+ A+++ Sbjct: 4 DEKYMRAAIGQAR-KAGAIGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEIIAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ G T YVTLEPC P CA I++ I +VV+ +P +G L Sbjct: 62 ACKKIGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSVLD 115 Query: 118 WLSQKGI 124 L + G Sbjct: 116 LLHEDGF 122 >gi|269123684|ref|YP_003306261.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus moniliformis DSM 12112] gi|268315010|gb|ACZ01384.1| CMP/dCMP deaminase zinc-binding protein [Streptobacillus moniliformis DSM 12112] Length = 159 Score = 45.1 bits (105), Expect = 0.017, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 40/147 (27%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGV---------------- 46 S+D FM A + S +P V IVKD ++G G Sbjct: 8 SWDEYFMGIAFLSAN-----RSKDPVTQVGACIVKDSKIVGIGYNGFPIGSSDDEVPWEK 62 Query: 47 ------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 T Y HAE+ A+ + + +G+T YVT PC+ CA+ II+ GI +V Sbjct: 63 DGDFLNTKYAYVVHAELNAILNSNRDLKGSTIYVTHFPCNE------CAKSIIQTGISKV 116 Query: 101 VVCVD---DPDVRVSGRGLQWLSQKGI 124 + D D D ++ + + LS GI Sbjct: 117 IFFSDKHKDKDSSIASKRM--LSNAGI 141 >gi|324992584|gb|EGC24505.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK405] Length = 156 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EAR-----GATAYVTLEPC 79 G T +VT+EPC Sbjct: 70 HENSWRLLGTTLFVTIEPC 88 >gi|220907233|ref|YP_002482544.1| CMP/dCMP deaminase [Cyanothece sp. PCC 7425] gi|219863844|gb|ACL44183.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7425] Length = 144 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 14/99 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64 +FM AA+ +R GL + ++VK+G +IGRG G P HAE+ L++AG Sbjct: 3 QFMQAAIAEAR--TGLQEGGIPIGSVLVKNGEIIGRGHNQRVQQGNPIIHAEIDCLQQAG 60 Query: 65 EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R T Y TL PC CA +++ GI++V+ Sbjct: 61 RIGRYQDTTLYSTLMPCY------LCAGAVVQFGIKKVI 93 >gi|221067789|ref|ZP_03543894.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1] gi|220712812|gb|EED68180.1| CMP/dCMP deaminase zinc-binding [Comamonas testosteroni KF-1] Length = 463 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 17/119 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 +S FM AL +R V ++VKDG VIGRG ++A HAEV A Sbjct: 5 ASVHEHFMRQALEQAR--CAAACGEVPVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLA 62 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L EA G T YVTLEPC+ C+ ++ + VV +P +G Sbjct: 63 LREAARTLGNYRLEGCTLYVTLEPCTM------CSGAMLHARVDAVVYGAAEPRTGAAG 115 >gi|330892455|gb|EGH25116.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. mori str. 301020] gi|330894515|gb|EGH27176.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. mori str. 301020] Length = 169 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 16/109 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G +IGRG ++A HAE+ A+ +A G+T YVTLEPCS Sbjct: 34 VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 CA I+ + RVV +P + Q+ SQ G + R++ Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVL 135 >gi|255732273|ref|XP_002551060.1| DRAP deaminase [Candida tropicalis MYA-3404] gi|240131346|gb|EER30906.1| DRAP deaminase [Candida tropicalis MYA-3404] Length = 590 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE----- 62 +FM A+ + G T T +V C++V +G VI G + G HAE ALE+ Sbjct: 438 KFMEMAIEQAE-KCGETQTQFNVGCVLVNNGKVISTGHSRELPGNTHAEQCALEKYFAEH 496 Query: 63 --AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRV-SGRGLQ 117 E G + T+EPCS + PC I+E GI+ V V +PD+ V + Q Sbjct: 497 DGVKEVPEGTEIFTTMEPCSLRLSGNLPCVDRILETKGIKTCFVGVLEPDIFVKNNSSYQ 556 Query: 118 WLSQKGI 124 L + G+ Sbjct: 557 KLLKNGV 563 >gi|149369588|ref|ZP_01889440.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49] gi|149357015|gb|EDM45570.1| putative deoxycytidylate deaminase [unidentified eubacterium SCB49] Length = 142 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 64/151 (42%), Gaps = 36/151 (23%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP--------- 53 +S ++ A LR ++ L+ N V LIVK ++I G Y G P Sbjct: 3 ASKQKKYDVAYLRMAKEWSKLSHCNRKQVGALIVKGNMIISDG---YNGTPTGFDNECED 59 Query: 54 ----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A+ + + +GAT Y+TL PC C++ I + GI+RV Sbjct: 60 CDNNTHWYVLHAEANAILKVASSTQSCQGATLYITLSPC------KDCSKLIHQSGIKRV 113 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 V D GL++L + G+ + + E Sbjct: 114 VYHKGYKD----DSGLKFLEKAGVSITHIEE 140 >gi|114330609|ref|YP_746831.1| CMP/dCMP deaminase, zinc-binding [Nitrosomonas eutropha C91] gi|114307623|gb|ABI58866.1| tRNA-adenosine deaminase [Nitrosomonas eutropha C91] Length = 167 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 53/122 (43%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +PV + D FM AL +R V S V ++V++ + G G VT HAE Sbjct: 8 VPVQAEDEYFMRQALDLAR--VAGDSGEVPVGAVVVRNSQIAGYGYNCPVTLMDPTAHAE 65 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +A + T YVTLEPC C + I+R+V +DP V Sbjct: 66 IMALRDAANKLGNYRLPECTLYVTLEPCVM------CIGSMFHARIKRLVYAAEDPKTGV 119 Query: 112 SG 113 G Sbjct: 120 CG 121 >gi|260592105|ref|ZP_05857563.1| cytidine/deoxycytidylate deaminase family protein [Prevotella veroralis F0319] gi|260535983|gb|EEX18600.1| cytidine/deoxycytidylate deaminase family protein [Prevotella veroralis F0319] Length = 144 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 49/121 (40%), Gaps = 36/121 (29%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 S D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 6 SLLDYRY----LRMARIWAENSYCRRRQVGALVVKDKMIISDG---YNGTPSGFENICED 58 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L + + GAT YVT PC C++ II+ GIRRV Sbjct: 59 ESGTTFPYVLHAEANAITKLARSSNNSDGATLYVTASPCIE------CSKLIIQAGIRRV 112 Query: 101 V 101 V Sbjct: 113 V 113 >gi|257487178|ref|ZP_05641219.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331009206|gb|EGH89262.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 169 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G +IGRG ++A HAE+ A+ +A G+T YVTLEPCS Sbjct: 34 VGAVVVQNGEIIGRGYNCPISASDPSAHAEMVAVRDAARALDNYRLPGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ + RVV +P + Q+ SQ Sbjct: 94 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ 127 >gi|332829184|gb|EGK01848.1| hypothetical protein HMPREF9455_01996 [Dysgonomonas gadei ATCC BAA-286] Length = 147 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M A + W V LIVKD ++I G Y G P Sbjct: 9 LDERYMRMA---AIWAENSYCVRRKVGALIVKDKMIISDG---YNGTPAGFENICEDENN 62 Query: 54 -------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 63 ETKPYVLHAEANAITKVACSHNSSMGATMYVTTSPC------IECAKLIIQAGIKRVV 114 >gi|332285213|ref|YP_004417124.1| cytosine deaminase [Pusillimonas sp. T7-7] gi|330429166|gb|AEC20500.1| cytosine deaminase [Pusillimonas sp. T7-7] Length = 145 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGE 65 FM AA++ +R +GL + ++V G +IGRG C H E+ ALE AG Sbjct: 4 FMKAAIQEAR--LGLQEGGIPIGSVLVHQGTIIGRGHNRRVQCGSTILHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R + Y TL PC P C I+ GI +VV+ Sbjct: 62 QPASVYRESVLYTTLSPC------PMCTGAILLYGIPKVVI 96 >gi|224006712|ref|XP_002292316.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220971958|gb|EED90291.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 777 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 26/118 (22%) Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--------------------EEARGAT 71 A L+ KDG ++G+G + Y G HA A +EAG ++ +T Sbjct: 212 AVLVAKDGRILGKGRSTYAG--HAVEFAFKEAGINATPLREWCVAWPSDSKFRKDISEST 269 Query: 72 AYVTLEPCSHYGR---SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 YVTLEP S+ G+ PP Q + GI R+V+ DP + G L G+ V Sbjct: 270 LYVTLEP-SNEGQGEEKPPITQLVEMAGIPRLVIGCQDPVPENAAEGAGRLHAAGVSV 326 >gi|86140853|ref|ZP_01059412.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis MED217] gi|85832795|gb|EAQ51244.1| putative deoxycytidylate deaminase [Leeuwenhoekiella blandensis MED217] Length = 146 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 58/140 (41%), Gaps = 40/140 (28%) Query: 13 AALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------------ 53 A LR +R W V LIVKD ++I G Y G P Sbjct: 15 AYLRMAREWAKLSYCQRKQVGALIVKDKMIISDG---YNGTPTGFENICEDEEGYTKWYV 71 Query: 54 -HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV--CVDDP 107 HAE A+ + + GAT Y+TL PC+ C++ I + GI+RVV DP Sbjct: 72 LHAEANAILKVAASTQSCVGATLYITLSPCTE------CSKLIHQAGIKRVVFNKAYKDP 125 Query: 108 DVRVSGRGLQWLSQKGIIVD 127 G+ +L + G+ VD Sbjct: 126 S------GIDFLRRAGVSVD 139 >gi|254030277|gb|ACT53870.1| DRAP deaminase [Candida membranifaciens] Length = 357 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 10/125 (8%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE----A 63 ++M A+ + G T+T +V ++V DG ++G G T G HAE ALE+ Sbjct: 212 KYMELAIELAE-KCGETTTQFNVGAVLVYDGEILGTGHTRELEGNTHAEQCALEKYFTRT 270 Query: 64 GEE--ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDP-DVRVSGRGLQWL 119 GE G Y ++EPCS + PC + I++ I V V +P D +Q L Sbjct: 271 GERNVPYGTKIYTSMEPCSFRLSGNLPCVERILQTNITTCFVGVVEPGDFVKDNTSVQTL 330 Query: 120 SQKGI 124 KG+ Sbjct: 331 ESKGV 335 >gi|260776578|ref|ZP_05885473.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC BAA-450] gi|260607801|gb|EEX34066.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC BAA-450] Length = 169 Score = 44.7 bits (104), Expect = 0.020, Method: Compositional matrix adjust. Identities = 40/140 (28%), Positives = 62/140 (44%), Gaps = 21/140 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VK G ++ G + + HAE+Q L +AG E R T YVTLEPC Sbjct: 32 VGAVLVKGGEIVAEGWNQSIGHHDATAHAEMQVLRKAGQVLENYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ ++R+V D +G L + I +ME E + Sbjct: 90 ----PMCAGALLHSRVKRIVYGAPDLKAGAAGTVLNLFEHQAAYHYADIEQGLMEEECRG 145 Query: 137 FLHAYLT-RQVEKRSHITLK 155 L A+ R+ EK++ +K Sbjct: 146 QLQAFFKRRRKEKKAQKQMK 165 >gi|24374802|ref|NP_718845.1| cytidine/deoxycytidylate deaminase family protein [Shewanella oneidensis MR-1] gi|24349479|gb|AAN56289.1|AE015766_5 cytidine/deoxycytidylate deaminase family protein [Shewanella oneidensis MR-1] Length = 194 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 15/99 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG+ I G ++ + C HAE+ L AG+ AT YVTLEPC+ Sbjct: 56 VGAVLVKDGLQIATGYNLSISQHDPCAHAEILCLRAAGQTVENYRLLDATLYVTLEPCA- 114 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 CA ++ I RVV D +G L L Sbjct: 115 -----MCAGAMVHSRIARVVFGARDEKTGAAGTVLNLLQ 148 >gi|330959126|gb|EGH59386.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. maculicola str. ES4326] Length = 169 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 41/129 (31%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V+ G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVLVQHGEIIGRGYN----CPISGSDPSAHAEMMAIRDAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PCS CA I+ + RVV +P + GI+ ES+G+ F Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEP-------------KAGIV-----ESQGQFF 125 Query: 138 LHAYLTRQV 146 +L +V Sbjct: 126 SQGFLNHRV 134 >gi|213961866|ref|ZP_03390132.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga sputigena Capno] gi|213955655|gb|EEB66971.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga sputigena Capno] Length = 146 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 38/141 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 +D +M A+ +++ S V ++VKD ++I G Y G P Sbjct: 12 YDKAYMRMAMEWAKLSY---SQRKQVGAIMVKDRMIISDG---YNGTPTGFDNCCEDEEG 65 Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + + GAT Y+T+ PC C++ I + GI+RVV Sbjct: 66 NTHWYVLHAEANAIMKVASSTQSSEGATLYITMSPC------KECSKLIYQSGIKRVVYK 119 Query: 104 VDDPDVRVSGRGLQWLSQKGI 124 D GL +L + G+ Sbjct: 120 EGYRD----NEGLAFLKKAGV 136 >gi|322386624|ref|ZP_08060249.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC 51100] gi|321269297|gb|EFX52232.1| tRNA-specific adenosine deaminase [Streptococcus cristatus ATCC 51100] Length = 166 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + + C++VK+G +IGRG A HAE+ A+EEA + Sbjct: 22 FMREALKEA--EIALANDEIPIGCVLVKNGQIIGRGHNAREELQRAVMHAEIMAIEEANQ 79 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 80 HENSWRLLDTTLFVTIEPC 98 >gi|188588285|ref|YP_001922596.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str. Alaska E43] gi|188498566|gb|ACD51702.1| tRNA-specific adenosine deaminase [Clostridium botulinum E3 str. Alaska E43] Length = 157 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 21/111 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKD IVI + T HAE+ A+ EA + G YVTLEPC+ Sbjct: 27 IGAVIVKDNIVISKAHNLKETLKDATAHAEILAIREASKFLDDWRLNGTEMYVTLEPCTM 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 C II+ I ++ + + D+ G S +I DRM+ES Sbjct: 87 ------CTSAIIQSRISKLHIGTFNKDMGACG------SIINLIDDRMLES 125 >gi|146298293|ref|YP_001192884.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101] gi|146152711|gb|ABQ03565.1| CMP/dCMP deaminase, zinc-binding [Flavobacterium johnsoniae UW101] Length = 143 Score = 44.7 bits (104), Expect = 0.021, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 61/144 (42%), Gaps = 36/144 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR ++ W + V +IVKD ++I G Y G P Sbjct: 8 KYDKAYLRIAKEWSLLSYCKRKQVGAIIVKDRMIISDG---YNGTPSGFENCCEDEDGLT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+TL PC C++ I + GI+RVV Sbjct: 65 RWDVLHAEANAILKVARSTQSCEGATLYITLSPCKE------CSKLIHQSGIKRVVY--- 115 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129 D G+Q+L + G+ V+ + Sbjct: 116 -KDGYRDDSGIQFLIKAGVEVEHI 138 >gi|160882011|ref|YP_001560979.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg] gi|160430677|gb|ABX44240.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg] Length = 161 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 17/121 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 ++M AA+ ++ L P + C+IV D +I RG T HAE+ A+E+A Sbjct: 6 KYMKAAIVQAK-KAALIGEVP-IGCVIVYDNKIIARGYNKRNTKKTTLAHAEILAIEKAS 63 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 G T YVTLEPC C+ I++ + RVV+ +P +G L L Sbjct: 64 RYLNDWRLEGCTMYVTLEPCQM------CSGAIVQSRMDRVVIGSMNPKAGCAGSILNLL 117 Query: 120 S 120 Sbjct: 118 Q 118 >gi|281424156|ref|ZP_06255069.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris F0302] gi|281401717|gb|EFB32548.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris F0302] Length = 159 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 36/121 (29%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 17 QQLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCED 69 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L + + G+T YVT PC CA+ II+ GIRRV Sbjct: 70 ANQATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIRRV 123 Query: 101 V 101 V Sbjct: 124 V 124 >gi|182682990|ref|YP_001834737.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae CGSP14] gi|303255537|ref|ZP_07341594.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS455] gi|303260656|ref|ZP_07346619.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP-BS293] gi|303260820|ref|ZP_07346769.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP14-BS292] gi|303263147|ref|ZP_07349070.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS397] gi|303267493|ref|ZP_07353343.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS457] gi|303269460|ref|ZP_07355227.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS458] gi|182628324|gb|ACB89272.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae CGSP14] gi|301800992|emb|CBW33654.1| putative deaminase [Streptococcus pneumoniae INV200] gi|302597498|gb|EFL64587.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS455] gi|302637657|gb|EFL68143.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP14-BS292] gi|302638186|gb|EFL68658.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP-BS293] gi|302640994|gb|EFL71374.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS458] gi|302642968|gb|EFL73265.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS457] gi|302646920|gb|EFL77144.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae BS397] Length = 155 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|288921249|ref|ZP_06415533.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f] gi|288347339|gb|EFC81632.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EUN1f] Length = 150 Score = 44.7 bits (104), Expect = 0.022, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 6/96 (6%) Query: 54 HAEVQALEE-AGEEARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109 HAE AL + A ++ R ATA Y TLEPCS P C Q I+ GI RVV+ +P + Sbjct: 54 HAEESALAKIAPDDPRLATATIYSTLEPCSQRRSRPRTCTQLILAAGIPRVVIAWREPSL 113 Query: 110 RVSG-RGLQWLSQKGIIVDRMME-SEGKIFLHAYLT 143 V+ +G + L+ G+ V + E E ++A+L+ Sbjct: 114 FVADCQGCELLTAAGVTVVELPELGEQARAMNAHLS 149 >gi|148985360|ref|ZP_01818565.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71] gi|148986205|ref|ZP_01819157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP3-BS71] gi|148995215|ref|ZP_01824050.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus pneumoniae SP9-BS68] gi|149004172|ref|ZP_01828969.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP14-BS69] gi|149023458|ref|ZP_01836047.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72] gi|168483689|ref|ZP_02708641.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC1873-00] gi|168486729|ref|ZP_02711237.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC1087-00] gi|169833520|ref|YP_001693493.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae Hungary19A-6] gi|221230966|ref|YP_002510118.1| deaminase [Streptococcus pneumoniae ATCC 700669] gi|225853633|ref|YP_002735145.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA] gi|225857883|ref|YP_002739393.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 70585] gi|237650015|ref|ZP_04524267.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI 1974] gi|237822610|ref|ZP_04598455.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CCRI 1974M2] gi|147757834|gb|EDK64845.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP14-BS69] gi|147921819|gb|EDK72947.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP3-BS71] gi|147922318|gb|EDK73438.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP3-BS71] gi|147926817|gb|EDK77872.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus pneumoniae SP9-BS68] gi|147929781|gb|EDK80771.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP23-BS72] gi|168996022|gb|ACA36634.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae Hungary19A-6] gi|172043028|gb|EDT51074.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC1873-00] gi|183570307|gb|EDT90835.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC1087-00] gi|220673426|emb|CAR67886.1| putative deaminase [Streptococcus pneumoniae ATCC 700669] gi|225721389|gb|ACO17243.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 70585] gi|225723035|gb|ACO18888.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae JJA] gi|301793341|emb|CBW35702.1| putative deaminase [Streptococcus pneumoniae INV104] gi|301799211|emb|CBW31724.1| putative deaminase [Streptococcus pneumoniae OXC141] gi|332075677|gb|EGI86144.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA17570] gi|332204048|gb|EGJ18113.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA47901] gi|332205041|gb|EGJ19104.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA47368] Length = 155 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|15899968|ref|NP_344572.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae TIGR4] gi|111657255|ref|ZP_01408023.1| hypothetical protein SpneT_02001535 [Streptococcus pneumoniae TIGR4] gi|148996424|ref|ZP_01824142.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP11-BS70] gi|149010880|ref|ZP_01832185.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75] gi|168492307|ref|ZP_02716450.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC0288-04] gi|168576944|ref|ZP_02722786.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae MLV-016] gi|225855809|ref|YP_002737320.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae P1031] gi|307066702|ref|YP_003875668.1| cytosine/adenosine deaminase [Streptococcus pneumoniae AP200] gi|14971484|gb|AAK74212.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae TIGR4] gi|147756999|gb|EDK64038.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae SP11-BS70] gi|147764516|gb|EDK71446.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP19-BS75] gi|183573448|gb|EDT93976.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae CDC0288-04] gi|183577431|gb|EDT97959.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae MLV-016] gi|225725405|gb|ACO21257.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae P1031] gi|306408239|gb|ADM83666.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae AP200] gi|332077311|gb|EGI87772.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA41301] gi|332201950|gb|EGJ16019.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA41317] Length = 155 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|330872834|gb|EGH06983.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 169 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 24/113 (21%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V++G +IGRG CP HAE+ A+ +A + G+T YVTLE Sbjct: 34 VGAVVVQNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAAKALDNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 PCS CA I+ + RVV +P + Q+ SQ G + R++ Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVL 135 >gi|264677875|ref|YP_003277782.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni CNB-2] gi|262208388|gb|ACY32486.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni CNB-2] Length = 457 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++VKDG VIGRG ++A HAEV AL EA G T YVTLEPC+ Sbjct: 30 VGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLALREAARTLGNYRLEGCTLYVTLEPCTM 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C+ ++ + VV +P +G Sbjct: 90 ------CSGAMLHARVDAVVYGAAEPRTGAAG 115 >gi|92112967|ref|YP_572895.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043] gi|91796057|gb|ABE58196.1| tRNA-adenosine deaminase [Chromohalobacter salexigens DSM 3043] Length = 151 Score = 44.7 bits (104), Expect = 0.023, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 33/128 (25%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79 P A ++ +DG ++G G V+++ HAEV+AL +A E G T +VTLEPC Sbjct: 25 PVGAVVVARDGDIVGTGFNAPVSSHDPSAHAEVRALRDAAERLGNYRLEGCTLFVTLEPC 84 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 C II + RVV +P SG M+ES +F Sbjct: 85 LM------CTGAIIHARVARVVYAAAEPR---SG---------------MVESRANLFAQ 120 Query: 140 AYLTRQVE 147 + +VE Sbjct: 121 PWFNHRVE 128 >gi|332880028|ref|ZP_08447712.1| cytidine and deoxycytidylate deaminase zinc-binding region [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682024|gb|EGJ54937.1| cytidine and deoxycytidylate deaminase zinc-binding region [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 146 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 38/150 (25%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 +D +M A+ +++ S V ++VKD ++I G Y G P Sbjct: 12 YDKAYMRMAMEWAKLSY---SQRKQVGAIMVKDRMIISDG---YNGTPTGFDNCCEDEEG 65 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + + ++GAT Y+T+ PC C++ I + GI+RVV Sbjct: 66 NTHWFVLHAEANAIMKVAASTQSSQGATLYITMSPC------KECSKLIYQSGIKRVVYK 119 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 D GL +L + G+ + + E E Sbjct: 120 EGYRD----NEGLVFLEKAGVELVHLEEVE 145 >gi|329119731|ref|ZP_08248411.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC BAA-1200] gi|327464180|gb|EGF10485.1| tRNA-specific adenosine deaminase [Neisseria bacilliformis ATCC BAA-1200] Length = 151 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 AR M+AAL +R V LIV+DG ++ A HAE+ AL A Sbjct: 7 ARLMAAALDKARQAAAENEV--PVGALIVRDGQILAAAHNACAAQNSVAAHAEILALTAA 64 Query: 64 GEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR---- 114 G+ AY+TLEPC P CA +++ I+RV+ +P +G Sbjct: 65 GQSLGTPRLDSCDAYITLEPC------PMCASALMQARIKRVIFAAAEPKSGAAGSVCNL 118 Query: 115 -GLQWLSQKGIIVDRMMESEGKIFLHAYL 142 L+ + +M E + L A+ Sbjct: 119 FADTRLNAHTAVFGGIMAEESRTLLQAFF 147 >gi|315023983|gb|EFT36985.1| dCMP deaminase [Riemerella anatipestifer RA-YM] Length = 143 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 59/150 (39%), Gaps = 38/150 (25%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 + FD ++ A +++ V LIVKD +I G Y G P Sbjct: 5 NKFDIAYLKMAQEWAKLSY---CKRKQVGALIVKDRTIISDG---YNGTPSGLENCCEDE 58 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + A GAT Y+TL PC C++ I + GI+R+V Sbjct: 59 QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPC------KECSKLIYQSGIKRLV 112 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 D GL +L G+ V ++ + Sbjct: 113 YI----DHYSDEEGLTFLKNAGVEVTQITQ 138 >gi|225017541|ref|ZP_03706733.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum DSM 5476] gi|224949691|gb|EEG30900.1| hypothetical protein CLOSTMETH_01468 [Clostridium methylpentosum DSM 5476] Length = 145 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE+ A+ +G++ GA Y TL PC+ CA+ II+ GI+ VV C D Sbjct: 64 HAELNAILNSGKDLSGAKLYTTLFPCNE------CAKAIIQSGIKEVVYCSD 109 >gi|317121275|ref|YP_004101278.1| bifunctional deaminase-reductase domain protein [Thermaerobacter marianensis DSM 12885] gi|315591255|gb|ADU50551.1| bifunctional deaminase-reductase domain protein [Thermaerobacter marianensis DSM 12885] Length = 252 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 87/186 (46%), Gaps = 16/186 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204 R ++ + + + D + M G G+V PI + + LRA DA+L G GTV A D Sbjct: 30 RPYVLINMVTTVDGKVTM-GRGTVKEPIGSKVDHALMARLRAPVDAVLRGAGTVRAYDVP 88 Query: 205 ---PELTC---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 P+ + GL P+ +++ L LD++ + A P+++ T P + Sbjct: 89 PRVPDEYAERRQARGLPAQ-PLPVVITGSCDLPLDARFFREAPRRPLVL-TRRAAPAEKV 146 Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ ++ + + +++ L +L R G+ LL EGG AV + + + +VD + Sbjct: 147 EAVRQVADVAFAGEEKVEMRAALALLRERYGIRRLLSEGGPAVNFAMLEAGVVDELFWTV 206 Query: 316 SQIVIG 321 + ++G Sbjct: 207 APKIVG 212 >gi|302384616|ref|YP_003820438.1| CMP/dCMP deaminase zinc-binding protein [Clostridium saccharolyticum WM1] gi|302195244|gb|ADL02815.1| CMP/dCMP deaminase zinc-binding protein [Clostridium saccharolyticum WM1] Length = 164 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 19/142 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60 + D ++M AA+R + G P + C+IV + +I RG HAE+ A+ Sbjct: 2 TIDEKYMRAAIRQAE-KAGAMGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEINAI 59 Query: 61 EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A + G T YVTLEPC P CA I++ I +V++ + +G Sbjct: 60 RKACRKVGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVIMGCMNAKAGCAGSV 113 Query: 116 LQWLSQKGIIVDRMMESEGKIF 137 L Q G+ + +E+E + Sbjct: 114 LDLFHQDGL--NHQVETESGVL 133 >gi|299141063|ref|ZP_07034201.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris C735] gi|298578029|gb|EFI49897.1| cytidine/deoxycytidylate deaminase family protein [Prevotella oris C735] Length = 150 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 48/121 (39%), Gaps = 36/121 (29%) Query: 4 SSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 8 QQLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCED 60 Query: 54 ----------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A L + + G+T YVT PC CA+ II+ GIRRV Sbjct: 61 ANQATFPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIRRV 114 Query: 101 V 101 V Sbjct: 115 V 115 >gi|317126762|ref|YP_004093044.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315471710|gb|ADU28313.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 161 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 67/161 (41%), Gaps = 22/161 (13%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQA 59 S D FM AL + + + + +IV+D ++I RG HAE+ A Sbjct: 6 SKEDIFFMEQALVEAEKAMEIGEV--PIGAIIVRDNVIIARGHNLREQQQMVTNHAELIA 63 Query: 60 LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 +++A EE T YVTLEPC P CA I++ ++RVV DP G Sbjct: 64 IQKACEEVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRMKRVVYGAADPKAGCCGS 117 Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRS 150 + L + + + + E E L + + +K+ Sbjct: 118 LMNLLDEPRLNHQVYVTSGLYEEESSRLLKDFFKKLRQKKK 158 >gi|47095526|ref|ZP_00233135.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 1/2a F6854] gi|254899824|ref|ZP_05259748.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J0161] gi|254912971|ref|ZP_05262983.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J2818] gi|254937352|ref|ZP_05269049.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900] gi|255025258|ref|ZP_05297244.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL J2-003] gi|284800395|ref|YP_003412260.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578] gi|284993581|ref|YP_003415349.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923] gi|47016136|gb|EAL07060.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 1/2a F6854] gi|258609958|gb|EEW22566.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900] gi|284055957|gb|ADB66898.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578] gi|284059048|gb|ADB69987.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923] gi|293590973|gb|EFF99307.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J2818] Length = 156 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +MESE Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ +++ KR+ + Sbjct: 139 MLKSFF-QELRKRNKLN 154 >gi|330833669|ref|YP_004402494.1| cytosine/adenosine deaminase [Streptococcus suis ST3] gi|329307892|gb|AEB82308.1| cytosine/adenosine deaminase [Streptococcus suis ST3] Length = 173 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM+ AL+ +R L + C+IVKDG +IGRG A HAEV A++EA Sbjct: 11 FMTQALQEAR--KSLEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANN 68 Query: 66 -----EARGATAYVTLEPC 79 +T +VT+EPC Sbjct: 69 VEGNWRLLDSTLFVTIEPC 87 >gi|149006819|ref|ZP_01830505.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus pneumoniae SP18-BS74] gi|307126250|ref|YP_003878281.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 670-6B] gi|147761734|gb|EDK68698.1| deoxyuridine 5'-triphosphate nucleotidohydrolase [Streptococcus pneumoniae SP18-BS74] gi|306483312|gb|ADM90181.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae 670-6B] gi|332076481|gb|EGI86943.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA17545] Length = 155 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|146319707|ref|YP_001199419.1| cytosine/adenosine deaminase [Streptococcus suis 05ZYH33] gi|253752698|ref|YP_003025839.1| deaminase [Streptococcus suis SC84] gi|253754524|ref|YP_003027665.1| deaminase [Streptococcus suis P1/7] gi|253756457|ref|YP_003029597.1| deaminase [Streptococcus suis BM407] gi|145690513|gb|ABP91019.1| Cytosine/adenosine deaminase [Streptococcus suis 05ZYH33] gi|251816987|emb|CAZ52636.1| putative deaminase [Streptococcus suis SC84] gi|251818921|emb|CAZ56764.1| putative deaminase [Streptococcus suis BM407] gi|251820770|emb|CAR47532.1| putative deaminase [Streptococcus suis P1/7] gi|292559319|gb|ADE32320.1| Cytosine/adenosine deaminase [Streptococcus suis GZ1] gi|319759114|gb|ADV71056.1| cytosine/adenosine deaminase [Streptococcus suis JS14] Length = 173 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM+ AL+ +R L + C+IVKDG +IGRG A HAEV A++EA Sbjct: 11 FMTQALQEAR--KSLEKDEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANN 68 Query: 66 -----EARGATAYVTLEPC 79 +T +VT+EPC Sbjct: 69 VEGNWRLLDSTLFVTIEPC 87 >gi|15902066|ref|NP_357616.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae R6] gi|116516620|ref|YP_815440.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae D39] gi|148987738|ref|ZP_01819201.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73] gi|15457551|gb|AAK98826.1| Conserved hypothetical protein [Streptococcus pneumoniae R6] gi|116077196|gb|ABJ54916.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus pneumoniae D39] gi|147926202|gb|EDK77275.1| adenylosuccinate synthetase [Streptococcus pneumoniae SP6-BS73] Length = 155 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|66358600|ref|XP_626478.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II] gi|46227806|gb|EAK88726.1| dCMP deaminase, Dcd1p like [Cryptosporidium parvum Iowa II] Length = 373 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 12/87 (13%) Query: 51 GCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD--P 107 C HAE AL AG ++ GAT YVTL PC C + II+C I RVV + P Sbjct: 294 SCMHAETNALLFAGIDKCIGATIYVTLMPC------ISCTKNIIQCEIERVVFTTEYAIP 347 Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEG 134 D +S ++ L + VDR++E + Sbjct: 348 D-EIS--TIKLLRDSNVKVDRLVEKQS 371 >gi|327481727|gb|AEA85037.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri DSM 4166] Length = 160 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V +G ++GRG ++ + HAE+ A+ A + + G+T YVTLEPCS Sbjct: 34 VGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCSM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 CA I+ ++RVV +P + G++V R G+ F + Sbjct: 94 ------CAGLIVHSRVQRVVYGATEP-------------KAGVVVSR-----GQFFDQGF 129 Query: 142 LTRQV 146 L +V Sbjct: 130 LNHRV 134 >gi|67608724|ref|XP_666899.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis TU502] gi|54657972|gb|EAL36670.1| dCMP deaminase; Dcd1p [Cryptosporidium hominis] Length = 373 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 12/87 (13%) Query: 51 GCPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD--P 107 C HAE AL AG ++ GAT YVTL PC C + II+C I RVV + P Sbjct: 294 SCMHAETNALLFAGIDKCIGATIYVTLMPC------ISCTKNIIQCEIERVVFTTEYAIP 347 Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEG 134 D +S ++ L + VDR++E + Sbjct: 348 D-EIS--TIKLLRDSNVKVDRLVEKQS 371 >gi|319953260|ref|YP_004164527.1| cmp/dcmp deaminase zinc-binding protein [Cellulophaga algicola DSM 14237] gi|319421920|gb|ADV49029.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga algicola DSM 14237] Length = 146 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 58/143 (40%), Gaps = 36/143 (25%) Query: 5 SFDARFMSAALRF-SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 S ++ A LR S W V +IVKD ++I G Y G P Sbjct: 4 SKQKKYDKAYLRMASEWGKLSFCKRKQVGAIIVKDRMIISDG---YNGTPTGFENQCEDG 60 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT Y+TL PC C++ I + GI+RVV Sbjct: 61 DGYTKWYVLHAEANAISKVAASTQSCNGATLYITLSPCKE------CSKLIHQSGIKRVV 114 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124 D GLQ+L + G+ Sbjct: 115 YQNGYKD----DSGLQFLQKAGV 133 >gi|315644422|ref|ZP_07897555.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] gi|315280172|gb|EFU43465.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] Length = 163 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 22/129 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80 + +IV+ +IGRG T Y G HAE+ A+ EA + GA YVTLEPC Sbjct: 38 IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASQHL-GAWRLLDCRLYVTLEPC- 95 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135 P CA I++ + +++ DP +G + L + + ++D +++ E Sbjct: 96 -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTTVIDGVLQEECA 150 Query: 136 IFLHAYLTR 144 L + R Sbjct: 151 SLLTQFFRR 159 >gi|257066772|ref|YP_003153028.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548] gi|256798652|gb|ACV29307.1| CMP/dCMP deaminase zinc-binding [Anaerococcus prevotii DSM 20548] Length = 180 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 41/118 (34%), Positives = 56/118 (47%), Gaps = 20/118 (16%) Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CP 53 +P ++F D FM+ A+ +R V V ++V DG +IGRG Y G Sbjct: 17 IPQNTFSKEDYFFMAEAINEAR--VARFIEEVPVGAVVVYDGKIIGRGHNLTYKGKSALK 74 Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 HAE+ A++EA T YVT+EPCS CA II I R+VV + D Sbjct: 75 HAELMAIKEASSWMDDFRLEECTMYVTMEPCS------MCAGAIINSRIDRLVVGIRD 126 >gi|322378196|ref|ZP_08052680.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. M334] gi|321280826|gb|EFX57842.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. M334] Length = 155 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGAIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|291520377|emb|CBK75598.1| Cytosine/adenosine deaminases [Butyrivibrio fibrisolvens 16/4] Length = 179 Score = 44.3 bits (103), Expect = 0.026, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 ++M+ AL+ +R + + C+IV++ +I RG T HAE+ A+++A Sbjct: 29 KYMAQALKEARKAYDINEV--PIGCVIVQNDKIIARGYNRRNTDKSVLAHAEIAAIQKAC 86 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ T YVTLEPC CA I++ I RVVV +P +G L L Sbjct: 87 KKTGDWRLEDCTLYVTLEPCQM------CAGAIVQARIPRVVVGAMNPKAGCAGSILNIL 140 Query: 120 S 120 Sbjct: 141 Q 141 >gi|300725950|ref|ZP_07059412.1| cytidine/deoxycytidylate deaminase family protein [Prevotella bryantii B14] gi|299776801|gb|EFI73349.1| cytidine/deoxycytidylate deaminase family protein [Prevotella bryantii B14] Length = 144 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 32/110 (29%) Query: 15 LRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------H 54 LR +R W V L+VKD ++I G Y G P H Sbjct: 15 LRMARIWAENSYCKRRKVGALVVKDKMIISDG---YNGTPSGFENICEDDNDVTKPYVLH 71 Query: 55 AEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 AE A L + + G+T YVT PC CA+ II+ GI+RVV Sbjct: 72 AEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|268680105|ref|YP_003304536.1| cytosine deaminase [Sulfurospirillum deleyianum DSM 6946] gi|268618136|gb|ACZ12501.1| Cytosine deaminase [Sulfurospirillum deleyianum DSM 6946] Length = 146 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +F+ AA+ ++ GL + ++V DG ++GRG V HAE+ LE AG Sbjct: 4 KFLEAAIEEAQ--KGLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSAILHAEMDCLENAG 61 Query: 65 E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WL 119 + R AT Y TL PC C+ I+ GI ++V+ + + RG + ++ Sbjct: 62 RLSAADYRNATLYSTLSPCDM------CSGAILLYGIPKLVIGENQ-----TFRGPEAYV 110 Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVE 147 +G+ V+ + +S+ + + A++ + E Sbjct: 111 KSRGVDVEVLNDSKCRELMEAFIEKNPE 138 >gi|224498434|ref|ZP_03666783.1| hypothetical protein LmonF1_01565 [Listeria monocytogenes Finland 1988] Length = 156 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +MESE Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ +++ KR+ + Sbjct: 139 MLKSFF-QELRKRNKMN 154 >gi|158313558|ref|YP_001506066.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec] gi|158108963|gb|ABW11160.1| CMP/dCMP deaminase zinc-binding [Frankia sp. EAN1pec] Length = 162 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 4/104 (3%) Query: 32 ACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSHYGRSP-P 87 A ++ DG + G + A HAE AL G GAT Y +LEPCS P Sbjct: 45 ALVVAADGTPVAEGYSRAEEPADHAEEVALRRLPPGGLPAGATVYSSLEPCSARASRPRT 104 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 C + ++ G+RRVV +P + V G + L+ G+ V + E Sbjct: 105 CTELLLAAGVRRVVFAWREPALFVDCDGAERLAAAGVEVLELAE 148 >gi|254521455|ref|ZP_05133510.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14] gi|219719046|gb|EED37571.1| tRNA-specific adenosine deaminase [Stenotrophomonas sp. SKA14] Length = 174 Score = 44.3 bits (103), Expect = 0.027, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 15/122 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +PV D +M AL + P A L+ DG ++G G + ++ HAE Sbjct: 7 VPVHDADEHWMRHALALAERAQREFDEIPVGAVLVGADGQLLGEGWNLNIASHDPSAHAE 66 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ G+ G+T YVTLEPC+ CA I+ + R+V DP Sbjct: 67 IVAMRVGGKVLSNHRLLGSTLYVTLEPCA------MCAMAIVHARVSRLVYGASDPKTGA 120 Query: 112 SG 113 G Sbjct: 121 CG 122 >gi|225860063|ref|YP_002741572.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae Taiwan19F-14] gi|298229197|ref|ZP_06962878.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298254029|ref|ZP_06977615.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501811|ref|YP_003723751.1| cytosine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|225728250|gb|ACO24101.1| tRNA-specific adenosine deaminase [Streptococcus pneumoniae Taiwan19F-14] gi|298237406|gb|ADI68537.1| possible cytosine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|327390436|gb|EGE88776.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Streptococcus pneumoniae GA04375] Length = 155 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 --EEAR--GATAYVTLEPC 79 E R T +VT+EPC Sbjct: 69 SKESWRLLDCTLFVTIEPC 87 >gi|255527107|ref|ZP_05393995.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7] gi|296187896|ref|ZP_06856289.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium carboxidivorans P7] gi|255509209|gb|EET85561.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7] gi|296047517|gb|EFG86958.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium carboxidivorans P7] Length = 145 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVKD I+I R T HAE+ A++EA + G + YVTLEPC Sbjct: 23 VGVVIVKDNIIIARAHNLRETLQDTLAHAEILAIKEASQYTNNWRLSGCSMYVTLEPC-- 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ I V + +P+ G Sbjct: 81 ----PMCAGAILQSRISNVYIGTFEPNTGACG 108 >gi|258510122|ref|YP_003183556.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476848|gb|ACV57167.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 161 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 1 MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M + D RFM AL + RW V ++V++G ++G G T G Sbjct: 1 MMEQAADERFMRRALELAEEAARWG------EVPVGAVVVENGRIVGEGFNRRETWRDGT 54 Query: 53 PHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 HAE+ A+EEA G YVTLEPC P CA I+ ++RVV D Sbjct: 55 AHAEMLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRVVYGATD 107 >gi|51891149|ref|YP_073840.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM 14863] gi|51854838|dbj|BAD38996.1| putative Cu-binding protein [Symbiobacterium thermophilum IAM 14863] Length = 152 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IV+D ++ R T + HAEV A+ EAG G T YVT+EPC Sbjct: 25 IGAVIVRDSEILVRTHNLRETTHDATAHAEVLAIREAGRLLGGWRLTGCTLYVTIEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 P CA +++ I RVV DP L++L G+ Sbjct: 83 ----PMCAGALLQSRIDRVVFGARDPKAWADRSILEFLQNPGL 121 >gi|258620044|ref|ZP_05715084.1| zinc-binding domain protein [Vibrio mimicus VM573] gi|258587777|gb|EEW12486.1| zinc-binding domain protein [Vibrio mimicus VM573] Length = 178 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 40 VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 97 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++R+V PD++ G Q + ++E E Sbjct: 98 ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 151 Query: 135 KIFLHAYLTRQVEKRSHITLK 155 + L A+ R +R I K Sbjct: 152 RAQLQAFFQR---RRKEIKAK 169 >gi|84388906|ref|ZP_00991114.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01] gi|84376970|gb|EAP93842.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01] Length = 194 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 20/129 (15%) Query: 31 VACLIVKDGIVI----GRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK+G +I R + ++ HAE++ L +AG+ T YVTLEPC Sbjct: 32 VGAVLVKEGEIISEGWNRSIGSHDATAHAEIETLRKAGQALENYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ ++R+V D +G L + + + ++E E + Sbjct: 90 ----PMCAGALLHSRVKRIVFGAPDLKAGAAGTVLNLFESQASYHYADVENGLLEQECRD 145 Query: 137 FLHAYLTRQ 145 L A+ R+ Sbjct: 146 QLQAFFKRR 154 >gi|315612142|ref|ZP_07887058.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC 49296] gi|315315805|gb|EFU63841.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis ATCC 49296] Length = 155 Score = 44.3 bits (103), Expect = 0.028, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLNCTLFVTIEPC 87 >gi|224538415|ref|ZP_03678954.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus DSM 14838] gi|224519974|gb|EEF89079.1| hypothetical protein BACCELL_03309 [Bacteroides cellulosilyticus DSM 14838] Length = 153 Score = 44.3 bits (103), Expect = 0.029, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC C++ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVV 117 >gi|319940016|ref|ZP_08014370.1| tRNA-specific adenosine deaminase [Streptococcus anginosus 1_2_62CV] gi|319810730|gb|EFW07057.1| tRNA-specific adenosine deaminase [Streptococcus anginosus 1_2_62CV] Length = 155 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + + C+IVK+G +IGRG A HAEV A+E+A + Sbjct: 11 FMREALKEA--EIALVNDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEVMAIEKANQ 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEHSWRLLDTTLFVTIEPC 87 >gi|262172118|ref|ZP_06039796.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451] gi|261893194|gb|EEY39180.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451] Length = 170 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 32 VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++R+V PD++ G Q + ++E E Sbjct: 90 ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 143 Query: 135 KIFLHAYLTRQVEKRSHITLK 155 + L A+ R +R I K Sbjct: 144 RAQLQAFFQR---RRKEIKAK 161 >gi|257126237|ref|YP_003164351.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b] gi|257050176|gb|ACV39360.1| CMP/dCMP deaminase zinc-binding [Leptotrichia buccalis C-1013-b] Length = 161 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 36/157 (22%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46 S+D FM A G+ S +PS AC+I +D +IG G Sbjct: 9 SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWD 63 Query: 47 -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 T Y HAE+ A+ + + + +T YVT PC+ CA+ I++ GI++ Sbjct: 64 KDGEFLDTKYPYVVHAELNAILNSIKSLKNSTIYVTHFPCNE------CAKAIVQSGIKK 117 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 V+ D S + + + + + + +E E ++ Sbjct: 118 VIYFSDKHKSLDSTKASKRIFENAQVETKHLEIEKEV 154 >gi|307710059|ref|ZP_07646503.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564] gi|307619039|gb|EFN98171.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK564] Length = 155 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 REESWRLLDCTLFVTIEPC 87 >gi|330830279|ref|YP_004393231.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565] gi|328805415|gb|AEB50614.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565] Length = 201 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V DG V+G G ++ + C HAEV A+ AG++ T YVTLEPC Sbjct: 60 VGAVLVLDGQVVGEGWNRSISEHDACAHAEVMAIRAAGKQLANYRLLDTTLYVTLEPCCM 119 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA +I ++RVV D +G Sbjct: 120 ------CAGALIHSRVKRVVYGARDLKTGAAG 145 >gi|269792349|ref|YP_003317253.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099984|gb|ACZ18971.1| CMP/dCMP deaminase zinc-binding protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 153 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 17/113 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGE 65 FM ALR + + + + + V ++V +G+V+GRG V G P HAE+ A+ +A Sbjct: 3 FMREALREA--ELAMEAGDVPVGAVVVMNGLVVGRGRNVRELTGDPLGHAEMVAIRDACS 60 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 GA+ YVTLEPC CA I++C I V + DP G Sbjct: 61 ALGTWRLDGASLYVTLEPCVM------CAGAILQCRISEVHFALRDPKAGAVG 107 >gi|253731164|ref|ZP_04865329.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725129|gb|EES93858.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 156 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 56/135 (41%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A++ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIKEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|146283335|ref|YP_001173488.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501] gi|145571540|gb|ABP80646.1| cytidine/deoxycytidylate deaminase [Pseudomonas stutzeri A1501] Length = 145 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V +G ++GRG ++ + HAE+ A+ A + + G+T YVTLEPCS Sbjct: 19 VGAVLVHEGQIVGRGFNCPISRHDPSAHAEMVAIRAAAQALQNYRLPGSTLYVTLEPCSM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 CA I+ ++RVV +P + G++V R G+ F + Sbjct: 79 ------CAGLIVHSRVQRVVYGATEP-------------KAGVVVSR-----GQFFDQGF 114 Query: 142 LTRQV 146 L +V Sbjct: 115 LNHRV 119 >gi|94496883|ref|ZP_01303457.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58] gi|94423559|gb|EAT08586.1| Putative cytosine/adenosine deaminase [Sphingomonas sp. SKA58] Length = 175 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 10/82 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEE 62 D+++M A+ +R G + + +A +IV DG V+ +GV HAE+ A Sbjct: 17 DSKWMQRAIDLAR-SKGSSPQDTPIAAIIVLDGAVLAQGVNETDERCDATAHAEMMAFRA 75 Query: 63 AGE-----EARGATAYVTLEPC 79 AG+ + RGAT Y TL+PC Sbjct: 76 AGQVHGDMDLRGATLYSTLQPC 97 >gi|19113382|ref|NP_596590.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Schizosaccharomyces pombe 972h-] gi|54036317|sp|Q9P7L3|RIB7_SCHPO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|7106075|emb|CAB76046.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Schizosaccharomyces pombe] Length = 268 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 55/210 (26%), Positives = 83/210 (39%), Gaps = 40/210 (19%) Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISKNQVHLLRAQSDAIL 194 AY K+ H+ L A S + IG G + ++ S HLLR + D I+ Sbjct: 5 QAYFPPSANKK-HVLLTWAQSINGRIGYVVESPSLGQLRLSSKESFVMTHLLRTKFDGIM 63 Query: 195 VGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS-KIIKTA----- 240 VG T D+P LT +L P+ II+D + +L S K+I+ A Sbjct: 64 VGSRTAENDNPSLTAKLPDPANPDCLLPLNKQPIPIIVDSNLRLDYASLKVIRLARERLG 123 Query: 241 -----LLAPVIIVTENDDPVLALA------------FRKKNINIIYCDCRDLKKLLTILV 283 ++AP I D L A R ++ + D L KLL Sbjct: 124 KPPLIIVAPSIWQQVQHDSKLKEAVKLIQSVGGRCIIRNEDSPDSWSDYVALDKLLQ--- 180 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 GV ++VEGGA + S +D+ ++ Sbjct: 181 -NGVNRIMVEGGAELLAKAFGSTDIDAYVV 209 >gi|254830845|ref|ZP_05235500.1| hypothetical protein Lmon1_05774 [Listeria monocytogenes 10403S] Length = 156 Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +MESE Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ +++ KR+ Sbjct: 139 MLKSFF-QELRKRNRFN 154 >gi|119509403|ref|ZP_01628552.1| cytosine deaminase [Nodularia spumigena CCY9414] gi|119466017|gb|EAW46905.1| cytosine deaminase [Nodularia spumigena CCY9414] Length = 143 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 14/99 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 FM AA+ ++ G + ++VKDG +IGRG V HAE+ L AG Sbjct: 3 EFMEAAIAQAKQ--GRKEGGIPIGSVLVKDGKIIGRGHNKRVQDNDPVTHAEIDCLRNAG 60 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 RG T Y TL PC CA +++ GI++V+ Sbjct: 61 RVGSYRGTTLYSTLMPCY------LCAGAVVQFGIKKVI 93 >gi|260061092|ref|YP_003194172.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501] gi|88785224|gb|EAR16393.1| deoxycytidylate deaminase [Robiginitalea biformata HTCC2501] Length = 150 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFS-RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR + W V +IV++ ++I G Y G P Sbjct: 8 KYDKAYLRMANEWGKLSYCRRKQVGAIIVRERMIISDG---YNGTPSGFENFCEDEEGYT 64 Query: 54 -----HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + + GAT Y+TL PC C++ I +CGIRRVV Sbjct: 65 KWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQCGIRRVVYQKA 118 Query: 106 DPDVRVSGRGLQWLSQKGI 124 D GLQ+L++ G+ Sbjct: 119 YKD----DSGLQFLARAGV 133 >gi|302037080|ref|YP_003797402.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii] gi|300605144|emb|CBK41477.1| tRNA-specific adenosine deaminase [Candidatus Nitrospira defluvii] Length = 162 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 +P+ D RFM AL +R L P +A L+V +GIVI + T HAE Sbjct: 2 LPLDDPDTRFMQQALTLAR-SAPLIGEVP-IAALLVHEGIVIAQAHNLRETRQDPTAHAE 59 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 V +++A T YVTLEPC+ C I+ I R+V DP Sbjct: 60 VIVIQDAARHMGSWRLINTTLYVTLEPCTM------CIGAIVLARIPRLVFAATDPKAGA 113 Query: 112 SG 113 G Sbjct: 114 CG 115 >gi|289435993|ref|YP_003465865.1| cytidine/deoxycytidylate deaminase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172237|emb|CBH28783.1| cytidine/deoxycytidylate deaminase family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 156 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 21/136 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACNHQKSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME+E Sbjct: 83 ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVESGLMEAESSE 138 Query: 137 FLHAYLTRQVEKRSHI 152 L ++ +++ KR I Sbjct: 139 MLKSFF-QELRKRKKI 153 >gi|187934949|ref|YP_001887626.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str. Eklund 17B] gi|187723102|gb|ACD24323.1| tRNA-specific adenosine deaminase [Clostridium botulinum B str. Eklund 17B] Length = 152 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 21/120 (17%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATA 72 + ++ + +IVKD IVI + T HAE+ A+ +A + +G Sbjct: 13 IAMSKGEVPIGAVIVKDDIVISKAHNLKETLKDATAHAEILAIRKAAKFLGDWRLKGTEM 72 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 YVTLEPCS CA II+ I ++ + + D+ G S +I DR +ES Sbjct: 73 YVTLEPCSM------CASAIIQSRISKLHIGTFNKDMGACG------SVINLIDDRQLES 120 >gi|121702783|ref|XP_001269656.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1] gi|119397799|gb|EAW08230.1| cytosine deaminase, putative [Aspergillus clavatus NRRL 1] Length = 148 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE++G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMAALEDSGRLPGSAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I ++RVV+ + V G ++L +G V + E K F+ A Sbjct: 84 M------CTGACILYNVKRVVIGENKNFV----GGEEYLLSRGREVVVLDNEECKEFMGA 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FIKEKPE 140 >gi|332140490|ref|YP_004426228.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas macleodii str. 'Deep ecotype'] gi|327550512|gb|AEA97230.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas macleodii str. 'Deep ecotype'] Length = 223 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 16/105 (15%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P AC+++ +G +IG G ++ + HAE++A+++A + + AT YVTLEPC Sbjct: 80 PVGACVVL-NGELIGEGYNTPISDHDPSAHAELRAVKQAASKVQNYRLIDATLYVTLEPC 138 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 S CA ++ ++RVV D +G + L + Sbjct: 139 SM------CAGMLVHARVKRVVFGAKDAKTGAAGSVMNLLQHPAL 177 >gi|94969013|ref|YP_591061.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis Ellin345] gi|94551063|gb|ABF40987.1| tRNA-adenosine deaminase [Candidatus Koribacter versatilis Ellin345] Length = 152 Score = 43.9 bits (102), Expect = 0.035, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 59/144 (40%), Gaps = 27/144 (18%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEE 62 D FM ALR + S + ++V +IGRG A+ P HAE+ A+ E Sbjct: 3 DELFMEEALREA--ARAQASGEVPIGAVVVYQDKIIGRGWNRPAFECDPTAHAEIIAIRE 60 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG E +VTLEPC+ CA I IRR++ DDP LQ Sbjct: 61 AGRELGNYRLTDCELFVTLEPCAM------CAGAITHARIRRLIYAADDPKAGAVKSALQ 114 Query: 118 WLSQ----------KGIIVDRMME 131 L+ G++ R ME Sbjct: 115 VLNHPALNHQVEITSGVLAGRAME 138 >gi|221133296|ref|ZP_03559601.1| CMP/dCMP deaminase, zinc-binding protein [Glaciecola sp. HTCC2999] Length = 175 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IV D +IG G + + C HAE+ A++ A + AT YVTLEPC+ Sbjct: 32 VGAVIVLDNQIIGEGYNRSIINHDPCGHAEIMAIQSAAQHINNYRILDATMYVTLEPCA- 90 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ ++RVV D +G L L Sbjct: 91 -----MCAGAIVHARMKRVVFGASDLKTGCAGSILNLLQH 125 >gi|109900168|ref|YP_663423.1| cytosine deaminase [Pseudoalteromonas atlantica T6c] gi|109702449|gb|ABG42369.1| Cytosine deaminase [Pseudoalteromonas atlantica T6c] Length = 145 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 16/102 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAG 64 +FM AA+ ++ +GL + ++V + +IGRG G P H E+ ALE AG Sbjct: 3 KFMQAAIDEAK--LGLAEGGIPIGSVLVHNNKIIGRGHNKRVQSGSPILHGEMDALENAG 60 Query: 65 EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + +T Y TL PCS C+ I+ GI +VV+ Sbjct: 61 RQPARVYKESTLYTTLSPCSM------CSGTILLYGIPKVVI 96 >gi|255534332|ref|YP_003094703.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10] gi|255340528|gb|ACU06641.1| Deoxycytidylate deaminase [Flavobacteriaceae bacterium 3519-10] Length = 141 Score = 43.9 bits (102), Expect = 0.036, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 62/146 (42%), Gaps = 38/146 (26%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53 M + FD ++ A+ +++ V LIVKD ++I G Y G P Sbjct: 1 MEPTKFDFAYLKMAMEWAKLS---HCERRKVGALIVKDRMIISDG---YNGTPSGFENCC 54 Query: 54 ------------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE A L+ AG + A+ AT Y+TL PC C++ ++ GI+ Sbjct: 55 EDSEGKTHWYVLHAEANAILKLAGSTQSAKDATLYLTLSPCR------DCSKLAVQAGIK 108 Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGI 124 +VV D D G+ +L GI Sbjct: 109 KVVYMDDYSD----NAGITFLQDHGI 130 >gi|317503536|ref|ZP_07961560.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606] gi|315665348|gb|EFV04991.1| cytidine/deoxycytidylate deaminase [Prevotella salivae DSM 15606] Length = 150 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 37/120 (30%), Positives = 49/120 (40%), Gaps = 36/120 (30%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 + D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 9 NLDNRY----LRMARIWAENSYCLRRQVGALVVKDKMIISDG---YNGTPSGFDNVCEDN 61 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC CA+ II+ GI+RVV Sbjct: 62 EGVTYPYVLHAEANAITKLARSNNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 115 >gi|297568720|ref|YP_003690064.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924635|gb|ADH85445.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 212 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 51/207 (24%), Positives = 83/207 (40%), Gaps = 17/207 (8%) Query: 166 MAGCGSVPITGFISKNQVHLL---RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 M CG + S+ L R +DA L+G GT+ D E+ G+ + +R Sbjct: 9 MTLCGRISPATMGSRQDRRFLEESRQATDASLLGAGTLREGDAEMRGP-GGILPENRIRA 67 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA--LAFRKKNINIIYCD-CRDLKKLL 279 I+ +L L+ + I P+I LA R + I + D DL Sbjct: 68 IISASGRLPLEQRKIFQIGPRPLIFTAAERAKSLADQAGQRAEVIALPAKDGFLDLAAAC 127 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL--------YRSQIVIGEGGIPSPLEE 331 L RGV LL+EGG + + R+VD +++ +R+ I + +G PL + Sbjct: 128 RKLARRGVKELLLEGGGTLNFHALRQRIVDELLVTIAPKLSGHRAAISLADGA--EPLGD 185 Query: 332 GYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +L+ + G C + KN Sbjct: 186 PFLDLQLLSCHPTLNGELFCRYRVNKN 212 >gi|292493710|ref|YP_003529149.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus Nc4] gi|291582305|gb|ADE16762.1| CMP/dCMP deaminase zinc-binding protein [Nitrosococcus halophilus Nc4] Length = 142 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 17/116 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V++G ++ G +TA HAE+QA+ A ++ G T YVTLEPC+ Sbjct: 19 VGAVLVQEGEMVAEGWNCPITAKDPTAHAEIQAIRAASQQLGNYRLVGTTLYVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 CA II+ I+RVV DP +G L L G ++ ++ +G I Sbjct: 79 ------CAGAIIQARIQRVVFGAFDPKGGAAGSVLSIL--PGDRLNHQVQCQGGIL 126 >gi|148266168|ref|YP_001232874.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4] gi|146399668|gb|ABQ28301.1| CMP/dCMP deaminase, zinc-binding protein [Geobacter uraniireducens Rf4] Length = 160 Score = 43.9 bits (102), Expect = 0.037, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 59/132 (44%), Gaps = 20/132 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AAL ++ G + +IV +G +IGRG V H E+ ALE AG Sbjct: 19 FMQAALAEAKQ--GQAEGGIPIGSVIVHNGRIIGRGHNRRVQKGSAILHGEMDALENAGR 76 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + R T Y TL PC+ C+ I+ GI RV+V + R + L Sbjct: 77 QTAAVYRECTLYTTLSPCAM------CSGAILLYGIPRVIV----GENRTFLGEEELLKS 126 Query: 122 KGIIVDRMMESE 133 +G+ VD + E E Sbjct: 127 RGVTVDVLQEQE 138 >gi|327403586|ref|YP_004344424.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM 16823] gi|327319094|gb|AEA43586.1| CMP/dCMP deaminase zinc-binding protein [Fluviicola taffensis DSM 16823] Length = 150 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 36/141 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 R+ A LR ++ W V LIV+DG +I G Y G P Sbjct: 16 RYDKAYLRMAQTWAELSHCERKKVGALIVRDGRIISDG---YNGTPAGFENCCEDQNGNT 72 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT ++TL PC C++ +++ GI+RVV ++ Sbjct: 73 QWYVLHAEANAILKVARSTNDCSGATLFITLSPC------KDCSKLVLQAGIKRVVYMME 126 Query: 106 DPDVRVSGRGLQWLSQKGIIV 126 D G+ +L G+ V Sbjct: 127 YKDT----TGVDFLKSAGVEV 143 >gi|189467913|ref|ZP_03016698.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM 17393] gi|189436177|gb|EDV05162.1| hypothetical protein BACINT_04305 [Bacteroides intestinalis DSM 17393] Length = 156 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 34/119 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 + D R++ A S W V LIVKD ++I G Y G P Sbjct: 11 ALDKRYIRMA---SIWAENSYCKRRQVGALIVKDKMIISDG---YNGTPAGFENVCEDDN 64 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + GAT YVT PC C++ II+ GI+RVV Sbjct: 65 NVTKPYVLHAEANAITKIARSNNSSDGATMYVTASPCIE------CSKLIIQAGIKRVV 117 >gi|254458782|ref|ZP_05072206.1| cytosine deaminase [Campylobacterales bacterium GD 1] gi|207084548|gb|EDZ61836.1| cytosine deaminase [Campylobacterales bacterium GD 1] Length = 145 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 20/120 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 F+ A++ ++ GL+ + ++V DG ++GRG V HAE+ LE AG Sbjct: 4 FLEEAIKEAK--KGLSEGGIPIGSVLVIDGKIVGRGHNRRVQNSSAILHAEMDCLENAGR 61 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPDVRVSGRGLQ 117 + + AT Y TL PC C+ I+ GI+RV++ P+ V RG++ Sbjct: 62 LKAIDYKRATIYSTLSPCDM------CSGAILLYGIKRVIIGENKTFKGPEEYVKSRGIE 115 >gi|163749537|ref|ZP_02156784.1| cytidine/deoxycytidylate deaminase family protein [Shewanella benthica KT99] gi|161330647|gb|EDQ01584.1| cytidine/deoxycytidylate deaminase family protein [Shewanella benthica KT99] Length = 189 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D FMS A+ +R + V +++KDG ++ G + + HAE+Q L Sbjct: 20 ALDKHFMSMAMEMARKAEAVGEV--PVGAVLIKDGELVSAGFNYCIGLHDPSAHAEMQCL 77 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +AG E R T YVTLEPC+ CA ++ I R+V D +G Sbjct: 78 RQAGKVIENYRLLNTTLYVTLEPCA------MCAGAMVHSRIERLVFGAKDDKTGAAG 129 >gi|325001093|ref|ZP_08122205.1| bifunctional deaminase-reductase-like protein [Pseudonocardia sp. P1] Length = 102 Score = 43.9 bits (102), Expect = 0.039, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 8/84 (9%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ +A+S D I AG ++ ++ + ++V +RA+ DA+LVG GTV DDP L Sbjct: 5 RPYVLASVAMSLDGYIDDAGPATLVLSDAVDLDRVDGVRAEVDAVLVGAGTVRNDDPRLL 64 Query: 209 CRLNGLQEH--------SPMRIIL 224 R + + SP+R+++ Sbjct: 65 VRSDRRRAERVAAGRAPSPLRVVV 88 >gi|307704429|ref|ZP_07641340.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597] gi|307707916|ref|ZP_07644391.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus mitis NCTC 12261] gi|307615981|gb|EFN95179.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus mitis NCTC 12261] gi|307622002|gb|EFO01028.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK597] Length = 155 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|313206907|ref|YP_004046084.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer DSM 15868] gi|312446223|gb|ADQ82578.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer DSM 15868] gi|325335656|gb|ADZ11930.1| Deoxycytidylate deaminase [Riemerella anatipestifer RA-GD] Length = 143 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 58/148 (39%), Gaps = 38/148 (25%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 + FD ++ A +++ V LIVKD +I G Y G P Sbjct: 5 NKFDIAYLKMAQEWAKLSY---CKRKQVGALIVKDRTIISDG---YNGTPSGLENCCEDE 58 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + A GAT Y+TL PC C++ I + GI+R+V Sbjct: 59 QGQTKWYVLHAEANAILKLARTTQTAEGATLYLTLSPCKE------CSKLIYQSGIKRLV 112 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 D GL +L G+ V ++ Sbjct: 113 YI----DHYSDEEGLTFLKNAGVEVTQI 136 >gi|319948958|ref|ZP_08023063.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4] gi|319437396|gb|EFV92411.1| hypothetical protein ES5_06172 [Dietzia cinnamea P4] Length = 88 Score = 43.9 bits (102), Expect = 0.039, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60 P + ++ A+ SR +G+++ NP V +++ G V+GRG T G HAEV AL Sbjct: 16 PARRLERAALAEAIALSRAALGVSTPNPPVGAVVLDAAGGVVGRGATEAPGGRHAEVVAL 75 Query: 61 EEAGE 65 +EAG+ Sbjct: 76 DEAGD 80 >gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae SmR1] gi|300074312|gb|ADJ63711.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 70/175 (40%), Gaps = 29/175 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D M AAL +R W +G V ++VKDG+VI G + + HAE+ AL Sbjct: 18 DLLHMRAALEQARHAWALGEVP----VGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A E G YVTLEPC C+ ++ + RVV DP G Sbjct: 74 RRAAEILGNYRLPGCELYVTLEPCVM------CSGAMMHARLARVVFGAADPKTGACGSV 127 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV---SQDN 162 L Q + ++ +M E L + + E+ L+ A SQ+N Sbjct: 128 LNLFEQDQLNHHTALLGGVMAEECGQLLKDFFAMRREQLKQQRLQAAAGEGSQEN 182 >gi|149908700|ref|ZP_01897361.1| putative zinc-binding protein [Moritella sp. PE36] gi|149808242|gb|EDM68181.1| putative zinc-binding protein [Moritella sp. PE36] Length = 182 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 54/129 (41%), Gaps = 33/129 (25%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IV + +IG G + ++ HAE+ AL EAG+ AT YVTLEPCS Sbjct: 47 VGAVIVLNDKIIGEGWNQSIISHDATAHAEIMALREAGKTVENYRLIDATLYVTLEPCS- 105 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 CA ++ ++R+V D +G S + HA Sbjct: 106 -----MCAGAMVHSRVKRLVYGAVDLKTGAAG------------------SVFNLVEHAQ 142 Query: 142 LTRQVEKRS 150 L Q+E RS Sbjct: 143 LNHQIEVRS 151 >gi|16804756|ref|NP_466241.1| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e] gi|224502871|ref|ZP_03671178.1| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL R2-561] gi|255029049|ref|ZP_05301000.1| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28] gi|16412219|emb|CAD00932.1| lmo2719 [Listeria monocytogenes EGD-e] Length = 156 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 21/134 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +MESE Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSE 138 Query: 137 FLHAYLTRQVEKRS 150 L ++ +++ KR+ Sbjct: 139 MLKSFF-QELRKRN 151 >gi|293364574|ref|ZP_06611295.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037] gi|307702826|ref|ZP_07639774.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037] gi|291316832|gb|EFE57264.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037] gi|307623506|gb|EFO02495.1| tRNA-specific adenosine deaminase [Streptococcus oralis ATCC 35037] Length = 155 Score = 43.9 bits (102), Expect = 0.040, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|268593242|ref|ZP_06127463.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131] gi|291311137|gb|EFE51590.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131] Length = 160 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 21/136 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKD ++ R + + HAE+ AL++AG+E T YVTLEPC Sbjct: 29 VGAVLVKDNHLVASGWNRSIIDHNPTAHAEIMALQQAGQELSNYRLLDTTLYVTLEPC-- 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA +I I RVV D G L + Q G+ + ++E + Sbjct: 87 ----IMCAGAMIHSRISRVVYGAKDFKTGACGSYLDIMGQAGLNHYVDVTGGVLEQQCSS 142 Query: 137 FLHAYLT-RQVEKRSH 151 L A+ R+ +K+ Sbjct: 143 MLSAFFKLRRAQKKEQ 158 >gi|86134833|ref|ZP_01053415.1| Deoxycytidylate deaminase [Polaribacter sp. MED152] gi|85821696|gb|EAQ42843.1| Deoxycytidylate deaminase [Polaribacter sp. MED152] Length = 141 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 39/140 (27%), Positives = 58/140 (41%), Gaps = 36/140 (25%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC--------- 52 +D ++ AL W V LIVKD ++I G T + C Sbjct: 9 YDKAYLRMALE---WGKLSHCKRKQVGALIVKDRMIISDGFNGTPTGFDNCCEDENGATK 65 Query: 53 ---PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV--CV 104 HAE A+ + + A+ AT Y+TL PC+ C++ I + GI+RVV Sbjct: 66 WEVLHAEANAILKVASSTQSAKNATLYITLSPCTQ------CSKLIHQAGIKRVVYANAY 119 Query: 105 DDPDVRVSGRGLQWLSQKGI 124 DP GL +L + G+ Sbjct: 120 KDPS------GLDFLKKAGV 133 >gi|322376101|ref|ZP_08050611.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. C300] gi|321279051|gb|EFX56094.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. C300] Length = 155 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|219849114|ref|YP_002463547.1| bifunctional deaminase-reductase domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543373|gb|ACL25111.1| bifunctional deaminase-reductase domain protein [Chloroflexus aggregans DSM 9485] Length = 289 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 49/209 (23%) Query: 147 EKRSHITLKIAVSQD-----NMIGMAGCGSVPITGFISKNQVH------LLRAQSDAILV 195 E+R I VS D N G G + IS+N H ++RA++DAILV Sbjct: 38 ERRPAIWTNFVVSHDGRIAFNQPGWNGGNA------ISRNHRHDHWLMEVIRARADAILV 91 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 G T+ R +P + P F L + + L A VI+ D P Sbjct: 92 GTATL---------RAARRHRWAPGEVFNWPAFT-QLRAAEERPPLPALVILSASGDVPA 141 Query: 256 LALAFRKKNINIIYC-----DCRDLKKLLTILVGR-----------------GVTSLLVE 293 A +++ +I R LT LVG G+ +LL E Sbjct: 142 AAALTSPRDLFLITTAQGAEHARSRHPHLTCLVGTDGQLDLTAAMTTLRQQYGIRTLLSE 201 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGE 322 GG S + +L+D + L S I++G Sbjct: 202 GGGRTYGSLLAHQLIDEVFLTISPIIVGN 230 >gi|225387328|ref|ZP_03757092.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme DSM 15981] gi|225046577|gb|EEG56823.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme DSM 15981] Length = 162 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D R+M A+R ++ L + C+IV + +I RG + HAE+ A+ Sbjct: 2 TTDERYMKEAVRQAKKASALGEV--PIGCVIVYEDKIIARGYNRRMVDQNVLSHAEIIAI 59 Query: 61 EEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC P CA I++ + +VV+ +P +G Sbjct: 60 RKACKKMGDWRLENCTLYVTLEPC------PMCAGAIVQARVPQVVIGCMNPKAGCAGSV 113 Query: 116 LQWLSQKGI 124 L L + G Sbjct: 114 LDMLHEDGF 122 >gi|115372516|ref|ZP_01459824.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Stigmatella aurantiaca DW4/3-1] gi|310819038|ref|YP_003951396.1| RibD domain-containing protein [Stigmatella aurantiaca DW4/3-1] gi|115370478|gb|EAU69405.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Stigmatella aurantiaca DW4/3-1] gi|309392110|gb|ADO69569.1| RibD domain protein [Stigmatella aurantiaca DW4/3-1] Length = 230 Score = 43.9 bits (102), Expect = 0.042, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 7/110 (6%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDL--KKL 278 I LDP KL+ S I + V+ +DD LAF R K ++ ++ DL KK+ Sbjct: 89 IALDPSGKLTWKSSSIDEEHVITVLTEAVSDD---YLAFLRSKGVSYLFGGKTDLNLKKV 145 Query: 279 LTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 L L G+ LL+EGG + SF+++ L+D + + + I G G P+ Sbjct: 146 LEKLRKEFGIKKLLLEGGGKINGSFLDADLIDELSVLVAPIADGAMGTPA 195 >gi|219681621|ref|YP_002468007.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471309|ref|ZP_05635308.1| hypothetical protein BaphL_01255 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624464|gb|ACL30619.1| hypothetical protein YfhC [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 161 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCP--HAEVQALEEA 63 D +M AL+++ ++ P A L+ K+ I+ IG + P HAE+ AL A Sbjct: 6 DKNWMKIALKYA-YYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGA 64 Query: 64 GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV--VCVDDPDVRVSGRGL 116 G++ + T YVTL+PC C II+ I+R+V + D R S + L Sbjct: 65 GKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNL 118 Query: 117 QWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKI 156 QK +D +M+ E L + ++ + + HI KI Sbjct: 119 FCNPQKDYKLDIKKNVMQRECSDILINFFQKKRKNKIHICKKI 161 >gi|315222391|ref|ZP_07864296.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus anginosus F0211] gi|315188552|gb|EFU22262.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus anginosus F0211] Length = 155 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + + C+IVKDG +IG G A HAEV A+EEA Sbjct: 11 FMLEALKEA--EIALANDEIPIGCVIVKDGKIIGHGHNAREELQRAVMHAEVMAIEEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 + T +VT+EPC Sbjct: 69 YEKSWRLLDTTLFVTIEPC 87 >gi|289166926|ref|YP_003445193.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus mitis B6] gi|288906491|emb|CBJ21321.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus mitis B6] Length = 155 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--DIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLIDCTLFVTIEPC 87 >gi|322391142|ref|ZP_08064614.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC 700780] gi|321145895|gb|EFX41284.1| tRNA-specific adenosine deaminase [Streptococcus peroris ATCC 700780] Length = 166 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM AL+ + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 22 FMREALKEA--EIALEHDEIPIGCVIVKDGKIIGRGHNAREELQRAVMHAEIMAIEDANL 79 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 80 SEESWRLLDCTLFVTIEPC 98 >gi|104783359|ref|YP_609857.1| cytidine/deoxycytidylate deaminase [Pseudomonas entomophila L48] gi|95112346|emb|CAK17073.1| putative cytidine/deoxycytidylate deaminase [Pseudomonas entomophila L48] Length = 145 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 16/113 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V+ G VIG+G + HAE+ A+ A + A G+T YVTLEPCS Sbjct: 19 VGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAIRAAAKSASNYRLPGSTLYVTLEPCSM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 CA I+ + RVV +P + Q+ SQ G + R+M G Sbjct: 79 ------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVMFEGG 124 >gi|326326019|ref|YP_004250828.1| putative deoxycytidylate deaminase [Vibrio nigripulchritudo] gi|323669070|emb|CBJ93112.1| Putative deoxycytidylate deaminase [Vibrio nigripulchritudo] Length = 148 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 53/126 (42%), Gaps = 43/126 (34%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDG--IVIGRGVTAYGGCP---- 53 +S +D RF A S W S +P+ A L K G I IG Y G P Sbjct: 1 MSKWDIRFCKLAKHVSEW-----SKDPNAKVGAVLFSKKGGDITIG-----YNGFPFGVE 50 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEP-CSHYGRSPPCAQFIIEC 95 HAEV AL AG ARGAT +V +P CS CA II+ Sbjct: 51 DSVKRLQDKETKLDLVVHAEVNALIAAGSRARGATLFVWGKPICSR------CAGPIIQA 104 Query: 96 GIRRVV 101 G++RVV Sbjct: 105 GVKRVV 110 >gi|34557713|ref|NP_907528.1| cytosine deaminase [Wolinella succinogenes DSM 1740] gi|34483430|emb|CAE10428.1| CYTOSINE DEAMINASE [Wolinella succinogenes] Length = 145 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 20/121 (16%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +F+ AAL ++ GL + ++V DG ++GRG V HAE+ LE AG Sbjct: 3 KFLEAALEEAQ--KGLDEGGIPIGSVLVIDGKIVGRGHNQRVQKGSSILHAEMDCLENAG 60 Query: 65 E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD----PDVRVSGRGL 116 + R AT Y TL PC C+ I+ GI ++V+ + P+ V RG+ Sbjct: 61 RLSASDYRKATLYSTLSPCDM------CSGAILLYGIPKLVIGENQTFRGPEAYVKSRGV 114 Query: 117 Q 117 + Sbjct: 115 E 115 >gi|322388496|ref|ZP_08062098.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC 700779] gi|321140614|gb|EFX36117.1| tRNA-specific adenosine deaminase [Streptococcus infantis ATCC 700779] Length = 166 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM AL+ + + L + C+IVKDG VIGRG A HAE+ A+E A Sbjct: 22 FMREALKEA--EIALEHDEIPIGCVIVKDGKVIGRGHNAREELQRAVMHAEIMAIENANL 79 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 80 SEESWRLLDCTLFVTIEPC 98 >gi|298368702|ref|ZP_06980020.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014 str. F0314] gi|298282705|gb|EFI24192.1| tRNA-specific adenosine deaminase [Neisseria sp. oral taxon 014 str. F0314] Length = 241 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 29/136 (21%) Query: 31 VACLIVKDGIVIGRGVTAYGGC-------PHAEVQALEEAGE-----EARGATAYVTLEP 78 V +VK+G VI A+ C HAE+ AL +AG G YVTLEP Sbjct: 114 VGAAVVKNGSVIA---AAHNTCIQSRDVSRHAEISALAQAGAVLGNYRLDGCDVYVTLEP 170 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133 C+ CA +I+ + RV+ D+P +G + + GI + +++ E Sbjct: 171 CAM------CASALIQARVARVIFGADEPKTGAAGSIIDLFAAHGINKHTAVTGGILKKE 224 Query: 134 GKIFLHAYLTRQVEKR 149 + L + EKR Sbjct: 225 CRTLLQQFFR---EKR 237 >gi|76799055|ref|ZP_00781248.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 18RS21] gi|76585592|gb|EAO62157.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 18RS21] Length = 168 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM+ AL+ ++ L + C+IVKDG +IGRG A HAE+ A+ A E Sbjct: 12 FMTEALKXAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69 Query: 66 EARG-----ATAYVTLEPC 79 + T +VT+EPC Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88 >gi|258625208|ref|ZP_05720121.1| zinc-binding domain protein [Vibrio mimicus VM603] gi|258582498|gb|EEW07334.1| zinc-binding domain protein [Vibrio mimicus VM603] Length = 157 Score = 43.5 bits (101), Expect = 0.045, Method: Compositional matrix adjust. Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V+DG +I G +T + HAE++ + +AG+ T YVTLEPC Sbjct: 19 VGAVLVRDGEIIAEGWNCSITHHDATAHAEIEVIRKAGKVLSNYRLLDTTLYVTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-------QWLSQKGIIVDRMMESEG 134 P CA ++ ++R+V PD++ G Q + ++E E Sbjct: 77 ----PMCAGALLHSRVKRIVYGA--PDLKAGAAGTVMDLFNSQASYHYATVEKGLLEEEC 130 Query: 135 KIFLHAYLTRQVEKRSHITLK 155 + L A+ R +R I K Sbjct: 131 RAQLQAFFQR---RRKEIKAK 148 >gi|210613778|ref|ZP_03289892.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787] gi|210150987|gb|EEA81995.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787] Length = 158 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A++ ++ L + C+IV + +IGRG HAE+ A+++ Sbjct: 5 DEKYMKEAIKQAKKAYALGEV--PIGCVIVYEDKIIGRGYNRRTIDKNTIAHAEMMAIKK 62 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC C+ I++ +++VVV +P +G L Sbjct: 63 ASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSILN 116 Query: 118 WLS 120 L Sbjct: 117 LLQ 119 >gi|192360046|ref|YP_001980851.1| cytosine deaminase [Cellvibrio japonicus Ueda107] gi|190686211|gb|ACE83889.1| cytosine deaminase [Cellvibrio japonicus Ueda107] Length = 146 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 22/145 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---YGGCP-HAEVQALEEAGE 65 FM AAL +R G + ++V DG ++GRG G C HAE+ LE AG Sbjct: 5 FMQAALEEAR--KGRREGGIPIGSVLVIDGRIVGRGHNQRVQKGSCVLHAEMDCLENAGR 62 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WLS 120 + R AT Y TL PC C+ ++ GI +VVV + +S +G + ++ Sbjct: 63 LKASDYRRATLYSTLSPCDM------CSGTVLLYGIPKVVVGEN-----LSFQGPEAYVR 111 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQ 145 +G+ +D ++E K + ++ +Q Sbjct: 112 SRGVELDIRDDAECKQLMQDFIAQQ 136 >gi|52145192|ref|YP_081636.1| cytidine/deoxycytidylate deaminase family protein [Bacillus cereus E33L] gi|51978661|gb|AAU20211.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus cereus E33L] Length = 166 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 74/170 (43%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV +G VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +VD ++E E L + R++ K+ K+ S +N Sbjct: 118 LLTDERFNHQCEVVDGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166 >gi|194398441|ref|YP_002036741.1| cytosine/adenosine deaminase [Streptococcus pneumoniae G54] gi|194358108|gb|ACF56556.1| Cytosine/adenosine deaminase [Streptococcus pneumoniae G54] Length = 106 Score = 43.5 bits (101), Expect = 0.046, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +IGRG A HAE+ A+E+A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIEDANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|261880389|ref|ZP_06006816.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361] gi|270332934|gb|EFA43720.1| cytidine/deoxycytidylate deaminase [Prevotella bergensis DSM 17361] Length = 156 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 48/119 (40%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VK+ ++I G Y G P Sbjct: 13 LDGRY----LRMARIWAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDDN 65 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 66 DLTKPYVLHAEANAITKLARSHNNSEGATLYVTASPCIE------CAKLIIQAGIKRVV 118 >gi|228478058|ref|ZP_04062669.1| tRNA-specific adenosine deaminase [Streptococcus salivarius SK126] gi|228250238|gb|EEK09491.1| tRNA-specific adenosine deaminase [Streptococcus salivarius SK126] Length = 172 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKDG V+GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--EKSLDKAEIPIGCVIVKDGEVVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|86740605|ref|YP_481005.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3] gi|86567467|gb|ABD11276.1| CMP/dCMP deaminase, zinc-binding [Frankia sp. CcI3] Length = 150 Score = 43.5 bits (101), Expect = 0.047, Method: Compositional matrix adjust. Identities = 43/131 (32%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEE-AG 64 D R+M+ A+ + T A ++ ++G I G + HAE AL + A Sbjct: 6 DHRWMTRAIELAHRCPPATGAYSVGAVIVGENGEEIAFGFSREVDDTVHAEESALAKVAP 65 Query: 65 EEARGATA--YVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLS 120 ++ R ATA Y TLEPCS P C Q I+E I RVV+ +P + V+ +G + L Sbjct: 66 DDPRLATATIYSTLEPCSQRMSWPRTCTQLILEAKIPRVVIAWREPSLFVADCQGYELLG 125 Query: 121 QKGIIVDRMME 131 G+ V M E Sbjct: 126 AAGVTVVGMPE 136 >gi|167723579|ref|ZP_02406815.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei DM98] Length = 63 Score = 43.5 bits (101), Expect = 0.047, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 29/59 (49%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 >gi|308491803|ref|XP_003108092.1| hypothetical protein CRE_10287 [Caenorhabditis remanei] gi|308248940|gb|EFO92892.1| hypothetical protein CRE_10287 [Caenorhabditis remanei] Length = 171 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 66/155 (42%), Gaps = 24/155 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEE 62 D RF+ A + L V C+ V DG IG+G G P HAE+ A+ E Sbjct: 9 DRRFLECAFNLA--QEALDGDEVPVGCVFVVDGKEIGKGRNRVNETGDPTRHAEMVAVTE 66 Query: 63 A----GEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRV 111 GEE R A YV+LEPC C+ + + GIR++V ++P VR Sbjct: 67 MWKKYGEECKDFLRRAVLYVSLEPCIM------CSSAMYQLGIRKMVYGAENPRFGGVRS 120 Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 G ++ + I IV + L ++ +Q Sbjct: 121 VGNAEKYRMEDNIQIVSNVWSDRSVAMLKSFYEKQ 155 >gi|225012149|ref|ZP_03702586.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A] gi|225003704|gb|EEG41677.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A] Length = 143 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 36/145 (24%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A L+ ++ W V LIVKD ++I G Y G P Sbjct: 8 KYDKAYLKMAKTWGQLSYCDRKKVGALIVKDRMIISDG---YNGTPSGFENVCEDEEHYT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + +GAT Y+TL PC C++ I + GI RVV Sbjct: 65 KWYVLHAEANAILKVASSTQSCKGATLYITLSPC------KDCSKLIHQSGIVRVVYAKA 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMM 130 D GL +L + G+ +D ++ Sbjct: 119 YKDT----TGLDFLKKAGVQLDHVV 139 >gi|186685266|ref|YP_001868462.1| deaminase-reductase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467718|gb|ACC83519.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme PCC 73102] Length = 226 Score = 43.5 bits (101), Expect = 0.048, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 87/193 (45%), Gaps = 22/193 (11%) Query: 181 NQVHLLRAQS--DAILVGIGTVLAD-------DPELTC--RLNGLQEHSPMRIILDPHFK 229 +Q HL S D +LVG GT+ A+ +PEL ++ G Q P+ ++ Sbjct: 33 DQAHLEYQASFADLVLVGAGTIRAEGGTYTIRNPELLAARKVRG-QSPQPITCVVSGSLD 91 Query: 230 LSLD----SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 LSLD S+ I+ + + N D +L + I++ D D + +++ R Sbjct: 92 LSLDLPFLSQDIERWIFTTRTGLKRNSD-ATSLQKLAELIDLGETDL-DWDRAYSLMAER 149 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEK---NFMCV 341 G+ ++V GG A+ + + + ++ L I+ G PSP+E EG+L + + V Sbjct: 150 GIHKVIVLGGGALTAALLKAGRINDWWLTIWPIIYGGKHAPSPVEGEGFLPQAAPHLQLV 209 Query: 342 RRDYFGSDVCLEY 354 GS + L Y Sbjct: 210 ETRQVGSQLFLNY 222 >gi|89890037|ref|ZP_01201548.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7] gi|89518310|gb|EAS20966.1| deoxycytidylate deaminase [Flavobacteria bacterium BBFL7] Length = 141 Score = 43.5 bits (101), Expect = 0.049, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 40/149 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVTAYGGCP----------- 53 +D ++ A +++ L+ N V LIV+D ++I G Y G P Sbjct: 9 YDIAYLKMAAEWAK----LSHCNRRQVGALIVRDRMIISDG---YNGTPSGFENFCEDEE 61 Query: 54 --------HAEVQA-LEEAG--EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE A L+ AG + GAT Y+T+ PC C++ I + GI+RVV Sbjct: 62 GYTKWYVLHAEANAILKVAGSTQSCAGATLYITMSPC------KDCSKLIHQSGIKRVVY 115 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 D GLQ+L + G+ V+++ + Sbjct: 116 VEGYKD----DSGLQFLQKAGVEVEQINQ 140 >gi|261492526|ref|ZP_05989079.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496801|ref|ZP_05993175.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307548|gb|EEY08877.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311685|gb|EEY12835.1| cytosine deaminase [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 174 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + P A L+ K+ +IGRG + HAE Sbjct: 12 LQISEQDIAFMQYALDLADL-AEAKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHAE 70 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 +QA+ +AG+ T YVTLEPC P CA I+ I+R+V D Sbjct: 71 MQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASD 119 >gi|167752821|ref|ZP_02424948.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216] gi|167659890|gb|EDS04020.1| hypothetical protein ALIPUT_01082 [Alistipes putredinis DSM 17216] Length = 148 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 22/125 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +FM AL + L + ++V DG ++GRG T HAE+QAL Sbjct: 7 DEKFMRLAL--NEAEKALEEQEVPIGAVVVADGRIVGRGHNLVETLADATAHAEMQALTA 64 Query: 63 AGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G T YVT+EPC CA I + RVV DDP RG + Sbjct: 65 AASTVGGKYLSECTLYVTVEPCIM------CAGAIAWSQVGRVVYGADDPK-----RGYR 113 Query: 118 WLSQK 122 S++ Sbjct: 114 RYSEQ 118 >gi|282881525|ref|ZP_06290195.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella timonensis CRIS 5C-B1] gi|281304636|gb|EFA96726.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella timonensis CRIS 5C-B1] Length = 140 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 47/120 (39%), Gaps = 36/120 (30%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 D R+ LR +R W V L+VKD +I G Y G P Sbjct: 9 QLDQRY----LRMARIWAENSYCQRRQVGALVVKDQRIISDG---YNGTPSGFENQCEDE 61 Query: 54 ---------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + GAT YVT PC CA+ II+ GI+RVV Sbjct: 62 QGVTHPYVLHAEANAITKLARSSNNSDGATLYVTASPC------IECAKLIIQAGIKRVV 115 >gi|240949642|ref|ZP_04753977.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases [Actinobacillus minor NM305] gi|240295900|gb|EER46576.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases [Actinobacillus minor NM305] Length = 150 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 42/87 (48%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A LI K+G ++G G + HAE+QA+ AGE+ + T YVTLEPC Sbjct: 18 PVGAVLIDKNGKILGEGWNRSIILSDSTAHAEIQAIRMAGEQLQNYRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 + CA I+ I R+V D Sbjct: 78 T------MCAGAILHSRIGRLVFGASD 98 >gi|319787039|ref|YP_004146514.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas suwonensis 11-1] gi|317465551|gb|ADV27283.1| CMP/dCMP deaminase zinc-binding protein [Pseudoxanthomonas suwonensis 11-1] Length = 366 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 50/118 (42%), Gaps = 15/118 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D R M AL + P A ++ G VIG G + + HAE+ A+ Sbjct: 212 AIDERHMCHALDLAERAEKEFDEIPVGAVVVSAAGEVIGEGWNRNILDHDPSAHAEIMAM 271 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +AG+ GAT YVTLEPC+ CA ++ I RVV DP G Sbjct: 272 RQAGQALSNHRLVGATLYVTLEPCAM------CAMALVHARIARVVYGAADPKTGACG 323 >gi|218261316|ref|ZP_03476184.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii DSM 18315] gi|218224097|gb|EEC96747.1| hypothetical protein PRABACTJOHN_01850 [Parabacteroides johnsonii DSM 18315] Length = 144 Score = 43.5 bits (101), Expect = 0.052, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 58/144 (40%), Gaps = 38/144 (26%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R++ A + W V LIV+D ++I G Y G P Sbjct: 11 LDKRYLRMA---AVWAENSYCKRRQVGALIVRDQMIISDG---YNGTPSGFENVCEDENN 64 Query: 54 -------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE A+ + + ++ AT YVT PC CA+ II+ GI+RVV Sbjct: 65 VTKPYVLHAEANAITKVAASSNSSKDATIYVTSAPCIE------CAKLIIQSGIKRVVY- 117 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD 127 RV G L + G+I+D Sbjct: 118 --SEKYRVED-GCNLLRRAGVIID 138 >gi|254361249|ref|ZP_04977392.1| cytosine deaminase [Mannheimia haemolytica PHL213] gi|153092745|gb|EDN73788.1| cytosine deaminase [Mannheimia haemolytica PHL213] Length = 174 Score = 43.5 bits (101), Expect = 0.053, Method: Compositional matrix adjust. Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + P A L+ K+ +IGRG + HAE Sbjct: 12 LQISEQDIAFMQYALDLADL-AEAKGEIPVGAVLVDKNQQIIGRGWNQTIQLCDPSAHAE 70 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 +QA+ +AG+ T YVTLEPC P CA I+ I+R+V D Sbjct: 71 MQAIRQAGQTLGNYRLLDCTLYVTLEPC------PMCAGAILHSRIKRLVFGASD 119 >gi|254519765|ref|ZP_05131821.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA] gi|226913514|gb|EEH98715.1| deoxycytidylate deaminase [Clostridium sp. 7_2_43FAA] Length = 164 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 49/164 (29%), Positives = 68/164 (41%), Gaps = 51/164 (31%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A+ G S +PS AC++ D ++ +G Y G P Sbjct: 8 SWDEYFMGVAIL-----AGKRSKDPSTQVGACIVDNDNKILSQG---YNGLPRGCSDDEF 59 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A L G GA YV L PC+ CA+ II+ Sbjct: 60 PWDREGHVLETKYPYVVHAELNAILNSRGTNLYGAKIYVALFPCNE------CAKAIIQA 113 Query: 96 GIRRVVVCVD---DPD-VRVSGRGLQWLSQKGIIVDRMMESEGK 135 GI+ VV D D D V+ S R LS G+ + R++E + K Sbjct: 114 GIKEVVYLSDKYSDSDNVKASKR---LLSASGVKM-RILEPKNK 153 >gi|28868664|ref|NP_791283.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213972056|ref|ZP_03400150.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato T1] gi|301385879|ref|ZP_07234297.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato Max13] gi|302063770|ref|ZP_07255311.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato K40] gi|302132520|ref|ZP_07258510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28851903|gb|AAO54978.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923189|gb|EEB56790.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. tomato T1] Length = 169 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 24/117 (20%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V +G +IGRG CP HAE+ A+ +A G+T YVTLE Sbjct: 34 VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALGNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 PCS CA I+ + RVV +P + Q+ SQ G + R++ G Sbjct: 90 PCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGG 139 >gi|83748799|ref|ZP_00945813.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551] gi|83724552|gb|EAP71716.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551] Length = 256 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 47/158 (29%), Positives = 65/158 (41%), Gaps = 32/158 (20%) Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--------SPMRII------LDPH---FK 229 RAQSDAI VG T+ AD+P LT R L P+++ LDP+ F+ Sbjct: 52 RAQSDAIFVGAETIRADNPRLTVREPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFR 111 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRG 286 KI+ L P I + LA +I D C + + +L RG Sbjct: 112 QGAQEKIV----LCPSAIAADLQSCYAGLAC------VIGLDGPIC--ARGIANVLQRRG 159 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 V L VEGG V F++ + D L + +G G Sbjct: 160 VQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVGRAG 197 >gi|218289065|ref|ZP_03493302.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] gi|218240890|gb|EED08068.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] Length = 156 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 52/119 (43%), Gaps = 25/119 (21%) Query: 1 MPVSSFDARFMSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M + D RFM AL + RW V ++V++G ++G G T G Sbjct: 1 MMEQAADERFMRRALELAEEAARWG------EVPVGAVVVENGRIVGEGFNRRETWRDGT 54 Query: 53 PHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 HAE+ A+EEA G YVTLEPC P CA I+ ++R+V D Sbjct: 55 AHAEMLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRLVYGATD 107 >gi|207739573|ref|YP_002257966.1| hypothetical protein RSIPO_04273 [Ralstonia solanacearum IPO1609] gi|206592953|emb|CAQ59859.1| putative 3.5.4.25 protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 76/194 (39%), Gaps = 32/194 (16%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 I L A S D + A + ++ + RAQSDAI VG T+ AD+P LT R Sbjct: 2 RIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTVR 61 Query: 211 LNGLQEH--------SPMRII------LDPH---FKLSLDSKIIKTALLAPVIIVTENDD 253 L P+++ LDP+ F+ KI+ L P I + Sbjct: 62 EPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIV----LCPSAIAADLQS 117 Query: 254 PVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 LA +I D C + + +L RGV L VEGG V F++ + D Sbjct: 118 CYAGLAC------VIGLDGPIC--ARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDR 169 Query: 311 IILYRSQIVIGEGG 324 L + +G G Sbjct: 170 FRLAIAPCFVGRAG 183 >gi|163753563|ref|ZP_02160686.1| deoxycytidylate deaminase [Kordia algicida OT-1] gi|161325777|gb|EDP97103.1| deoxycytidylate deaminase [Kordia algicida OT-1] Length = 144 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 36/145 (24%) Query: 8 ARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53 A++ A LR ++ W V +IVKD ++I G Y G P Sbjct: 7 AKYDHAYLRMAKEWGKLSYCKRKQVGAIIVKDRMIISDG---YNGTPSGFENFCEDEEGY 63 Query: 54 ------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE A+ + + GAT Y+T+ PC C++ I + GI RVV Sbjct: 64 TKWYVLHAEANAILKVAASTQSCVGATLYITMSPCKE------CSKLIHQAGITRVVYV- 116 Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRM 129 D G+Q+L + G+ V+ + Sbjct: 117 ---DAYKDDSGIQFLQRAGVEVEHI 138 >gi|192359003|ref|YP_001981836.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685168|gb|ACE82846.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Cellvibrio japonicus Ueda107] Length = 201 Score = 43.5 bits (101), Expect = 0.055, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IV++GI IG G +T+ HAE+ AL +A + GAT YVTLEPC+ Sbjct: 32 VGAVIVREGIAIGEGFNQPITSRDPSAHAEIVALRQAAAHLQNYRLPGATLYVTLEPCTM 91 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 C ++ I R+V +P Sbjct: 92 ------CVGALVHARITRLVYGTAEP 111 >gi|217076231|ref|YP_002333947.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B] gi|217036084|gb|ACJ74606.1| deoxycytidylate deaminase [Thermosipho africanus TCF52B] Length = 170 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ II GI++VV D PD Sbjct: 94 HAEQNALMQAAKFGISTDGATIYVTHKPCS------VCARLIINAGIKKVVYLNDYPD 145 >gi|54307981|ref|YP_129001.1| putative cytosine/adenosine deaminase [Photobacterium profundum SS9] gi|46912407|emb|CAG19199.1| Putative cytosine/adenosine deaminase [Photobacterium profundum SS9] Length = 171 Score = 43.5 bits (101), Expect = 0.056, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 31/148 (20%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V +G V+G G + + HAE+ AL +AG+ + AT YVTLEPC Sbjct: 32 VGAVVVYNGQVVGEGWNRSIGQHDATAHAEMMALRQAGKVVQNYRLLDATLYVTLEPC-- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131 P CA ++ I +V+ D +G + LS Q G++ + Sbjct: 90 ----PMCAGAMVHSRIGKVIFGASDLKTGAAGSVMNLLSYDEVNHHVDCQSGVL-----D 140 Query: 132 SEGKIFLHAYLT-RQVEKRSHITLKIAV 158 E + L A+ R+ EK++ + A Sbjct: 141 EECRAQLQAFFKRRRAEKKAEKKARQAA 168 >gi|332994184|gb|AEF04239.1| cytidine/deoxycytidylate deaminase family protein [Alteromonas sp. SN2] Length = 180 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 27/158 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P AC +V +G +IG G +T HAE+ A+ A + + AT YVTLEPC Sbjct: 35 PVGAC-VVHNGELIGEGWNTPITDSDPSAHAEMNAVRMAAKHLQNYRTTDATLYVTLEPC 93 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEG 134 S CA ++ I+RVV D +G + L+ + ++ ++ + Sbjct: 94 S------MCAGMLVHARIKRVVYGASDAKTGAAGSEMNILNHPSLNHQVDVISGVLADDC 147 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 + A+ R +R+ I L Q + CGS Sbjct: 148 ADKISAFFKR---RRAQIKLDKKAKQ---AALKNCGST 179 >gi|325688867|gb|EGD30875.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK115] Length = 156 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|313616657|gb|EFR89453.1| tRNA-specific adenosine deaminase [Listeria innocua FSL S4-378] Length = 156 Score = 43.5 bits (101), Expect = 0.057, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 58/133 (43%), Gaps = 21/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T HAE+ A+E+A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + ++E+E Sbjct: 83 ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCKVEAGLLEAESSA 138 Query: 137 FLHAYLTRQVEKR 149 L ++ R++ KR Sbjct: 139 MLKSFF-RELRKR 150 >gi|152989527|ref|YP_001346733.1| hypothetical protein PSPA7_1349 [Pseudomonas aeruginosa PA7] gi|150964685|gb|ABR86710.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7] Length = 182 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 33/125 (26%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++V++G +IGRG ++++ HAE+ A+ A EA G+T YVTLEPC Sbjct: 50 VGAVLVREGEIIGRGFNQPISSHDPSAHAEMVAIRMAAAEAGNYRLPGSTLYVTLEPCGM 109 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 C+ ++ I+R+V +P SG +ES G+ F + Sbjct: 110 ------CSGLLVHARIQRLVYGTLEPK---SG---------------AVESRGRFFEQEH 145 Query: 142 LTRQV 146 L +V Sbjct: 146 LNHRV 150 >gi|323350632|ref|ZP_08086294.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66] gi|322123314|gb|EFX94999.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis VMC66] Length = 156 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|149375103|ref|ZP_01892875.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter algicola DG893] gi|149360467|gb|EDM48919.1| cytidine/deoxycytidylate deaminase family protein [Marinobacter algicola DG893] Length = 166 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 41/124 (33%), Positives = 55/124 (44%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62 D +MS AL+ + G P V ++V DG IG G A GC HAE++AL + Sbjct: 7 DEAWMSRALQLAG-QAGAAGEVP-VGAVVVLDGKEIGTGFNAPISGCDPTAHAEIRALRD 64 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A GAT YVTLEPC+ C I+ I R+V +P Q Sbjct: 65 AAARVGNYRLPGATLYVTLEPCTM------CVGAIVHSRISRLVYGAAEPKAGAVASARQ 118 Query: 118 WLSQ 121 L++ Sbjct: 119 TLNE 122 >gi|15616866|ref|NP_240079.1| hypothetical protein BU255 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219682178|ref|YP_002468562.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|14286004|sp|P57343|Y255_BUCAI RecName: Full=Uncharacterized protein BU255 gi|25303863|pir||E84959 hypothetical protein yfhC [imported] - Buchnera sp. (strain APS) gi|10038930|dbj|BAB12965.1| hypothetical protein yfhC [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621911|gb|ACL30067.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086568|gb|ADP66649.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087149|gb|ADP67229.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087683|gb|ADP67762.1| tRNA-specific adenosine deaminase monomer (YfhC) [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 161 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 20/163 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV-IGRGVTAYGGCP--HAEVQALEEA 63 D +M AL+++ ++ P A L+ K+ I+ IG + P HAE+ AL A Sbjct: 6 DKNWMKIALKYA-YYAKEKGEIPIGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGA 64 Query: 64 GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV--VCVDDPDVRVSGRGL 116 G++ + T YVTL+PC C II+ I+R+V + D R S + L Sbjct: 65 GKKIKNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNL 118 Query: 117 QWLSQKGIIVD---RMMESEGKIFLHAYLTRQVEKRSHITLKI 156 QK +D +M+ E L + ++ + + HI KI Sbjct: 119 FCDPQKDYKLDIKKNVMQRECSDILINFFQKKRKNKIHICKKI 161 >gi|322834117|ref|YP_004214144.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602] gi|321169318|gb|ADW75017.1| CMP/dCMP deaminase zinc-binding protein [Rahnella sp. Y9602] Length = 180 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + + HAE+ AL + G + AT YVTLEPC Sbjct: 34 VGAVLVLDNQVIGEGWNRSIGHHDPTAHAEIMALRQGGNAVQNYRLLNATLYVTLEPCV- 92 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I IRRVV D +G L L G+ Sbjct: 93 -----MCAGAMIHSRIRRVVYGAADAKTGAAGSLLDVLRHPGM 130 >gi|71280259|ref|YP_270337.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71145999|gb|AAZ26472.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Colwellia psychrerythraea 34H] Length = 182 Score = 43.1 bits (100), Expect = 0.059, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V G +IG G + HAE+ A+ +AGE T YVTLEPC Sbjct: 44 VGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIRQAGEFLNNYRLLDCTLYVTLEPC-- 101 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA ++ I R+V D +G ++ + + ++E E Sbjct: 102 ----PMCAGLLVHSRINRLVYACSDLKTGAAGSAFNLVNNPQLNHQLEVCSNILEEECSQ 157 Query: 137 FLHAYL 142 L A+ Sbjct: 158 LLSAFF 163 >gi|332365640|gb|EGJ43399.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK355] Length = 156 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|153853556|ref|ZP_01994936.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814] gi|149753711|gb|EDM63642.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814] Length = 169 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 58/128 (45%), Gaps = 17/128 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M + S D ++M A++ ++ + + C+IV +IGRG HAE Sbjct: 1 MNMQSTDEKYMKEAIKQAKKAYAIGEV--PIGCVIVYQDKIIGRGYNRRTIDNNTLAHAE 58 Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A ++ T YVTLEPC C+ I++ + RVVV +P Sbjct: 59 LIAIKKASKKMNDWRLEDCTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGC 112 Query: 112 SGRGLQWL 119 +G L L Sbjct: 113 AGSILNLL 120 >gi|332291606|ref|YP_004430215.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus 4H-3-7-5] gi|332169692|gb|AEE18947.1| CMP/dCMP deaminase zinc-binding protein [Krokinobacter diaphorus 4H-3-7-5] Length = 142 Score = 43.1 bits (100), Expect = 0.060, Method: Compositional matrix adjust. Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 36/145 (24%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------- 53 ++S ++ A LR +R L+ N V +IVKD ++I G Y G P Sbjct: 1 MASKQHKYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDG---YNGTPTGFENVCE 57 Query: 54 -----------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 HAE A+ + + GAT Y+TL PC C++ + + GI+R Sbjct: 58 DDENNTKWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKR 111 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGI 124 VV D+ G+++L + G+ Sbjct: 112 VVYHNAYKDL----TGVKFLEKAGV 132 >gi|325697330|gb|EGD39216.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK160] Length = 165 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 21 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 78 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 79 HENSWRLLDTTLFVTIEPC 97 >gi|294658696|ref|XP_002770827.1| DEHA2F15488p [Debaryomyces hansenii CBS767] gi|202953318|emb|CAR66350.1| DEHA2F15488p [Debaryomyces hansenii] Length = 147 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 42/149 (28%), Positives = 62/149 (41%), Gaps = 22/149 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D + M A ++ G+ P LI +DG ++GRG + H E+ LE Sbjct: 5 DKQGMKIAFEEAKKKGGV----PIGGALIHEDGTILGRGHNMRFQSSSATLHGEISTLEN 60 Query: 63 AGEEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG + T Y TL PC C I GI+RVV+ +D V G Sbjct: 61 AGRLKGSIYKKCTMYTTLSPCHM------CTGACIMYGIKRVVLGENDNFV----GGEDL 110 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVE 147 L QKGI V + + + K + ++ + E Sbjct: 111 LKQKGIEVVNLNDKDCKDLMSKFIKERPE 139 >gi|305665639|ref|YP_003861926.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170] gi|88710395|gb|EAR02627.1| deoxycytidylate deaminase [Maribacter sp. HTCC2170] Length = 147 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR ++ W V ++VKD ++I G Y G P Sbjct: 8 KYDKAYLRMAQEWGKLSFCERKQVGAIVVKDRMIISDG---YNGTPTGFENVCEDEEGYT 64 Query: 54 -----HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + + GAT Y+TL PC C++ I + GI+RVV Sbjct: 65 KWYVLHAEANAISKVASSTQSCEGATLYITLSPCRE------CSKLIHQSGIKRVVYKKA 118 Query: 106 DPDVRVSGRGLQWLSQKGI 124 D G GL++L + G+ Sbjct: 119 YKD----GSGLEFLEKAGV 133 >gi|301154746|emb|CBW14209.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae T3T1] Length = 172 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D +FM AL + L P A L+ +G ++G G + + HAE+ A Sbjct: 3 SDLDEKFMQHALMLADRAEALGEI-PVGAVLVDDEGNILGEGWNLSIIEHDPTAHAEIVA 61 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L A + + T YVTLEPC+ CA I+ I+R+V D Sbjct: 62 LRNAAQNIQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 107 >gi|241956270|ref|XP_002420855.1| cytosine aminohydrolase, putative; cytosine deaminase, putative [Candida dubliniensis CD36] gi|223644198|emb|CAX41008.1| cytosine aminohydrolase, putative [Candida dubliniensis CD36] Length = 150 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 24/111 (21%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA----GEEARGATAYVTLEPCS 80 P +C+I DG V+G+G + + H E+ ALE A G+ + T Y TL PCS Sbjct: 26 PIGSCIISSDGTVLGQGHNERIQKHSSILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 C I+ G +RVV+ G + +L + ++V+ +E Sbjct: 86 M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLVENGVE 120 >gi|56459694|ref|YP_154975.1| cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR] gi|56178704|gb|AAV81426.1| Cytosine/adenosine deaminase putative [Idiomarina loihiensis L2TR] Length = 150 Score = 43.1 bits (100), Expect = 0.061, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D ++G G ++ HAE QA+ AG+ AT YVTLEPC+ Sbjct: 19 VGAVLVMDDKIVGEGYNQVISLSDPSAHAEAQAIRSAGQAIDNYRLVNATLYVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA I ++R+V DP +G ++ ++ + Sbjct: 79 ------CAGLITHARVKRLVFGATDPRTGATGTAIEVINHASM 115 >gi|329930226|ref|ZP_08283839.1| cytidine and deoxycytidylate deaminase zinc-binding region [Paenibacillus sp. HGF5] gi|328935248|gb|EGG31729.1| cytidine and deoxycytidylate deaminase zinc-binding region [Paenibacillus sp. HGF5] Length = 164 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 22/129 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80 + +IV+ +IGRG T Y G HAE+ A+ EA GA YVTLEPC Sbjct: 38 IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASRHL-GAWRLLDCRLYVTLEPC- 95 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135 P CA I++ + +++ DP +G + L + + +VD +++ E Sbjct: 96 -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTHVVDGVLQEECA 150 Query: 136 IFLHAYLTR 144 L + R Sbjct: 151 SLLTQFFRR 159 >gi|331019747|gb|EGH99803.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 169 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 24/117 (20%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP--------HAEVQALEEAGE-----EARGATAYVTLE 77 V ++V +G +IGRG CP HAE+ A+ +A G+T YVTLE Sbjct: 34 VGAVVVHNGEIIGRGYN----CPISGSDPSAHAEMVAIRDAARALGNYRLPGSTLYVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 PCS CA I+ + RVV +P + Q+ SQ G + R++ G Sbjct: 90 PCSM------CAGLIVHSRLARVVYGALEPKAGIVQSQGQFFSQ-GFLNHRVLFEGG 139 >gi|261403958|ref|YP_003240199.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] gi|261280421|gb|ACX62392.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] Length = 164 Score = 43.1 bits (100), Expect = 0.062, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 22/129 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80 + +IV+ +IGRG T Y G HAE+ A+ EA GA YVTLEPC Sbjct: 38 IGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREASRHL-GAWRLLDCRLYVTLEPC- 95 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGK 135 P CA I++ + +++ DP +G + L + + +VD +++ E Sbjct: 96 -----PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNLLQEPRFNHRTHVVDGVLQEECA 150 Query: 136 IFLHAYLTR 144 L + R Sbjct: 151 SLLTQFFRR 159 >gi|229170871|ref|ZP_04298476.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3] gi|228612606|gb|EEK69823.1| hypothetical protein bcere0006_110 [Bacillus cereus MM3] Length = 166 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ AL+E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLALDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S +N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166 >gi|22536583|ref|NP_687434.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 2603V/R] gi|25010509|ref|NP_734904.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae NEM316] gi|76788440|ref|YP_329120.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae A909] gi|77408782|ref|ZP_00785512.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae COH1] gi|77412323|ref|ZP_00788636.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae CJB111] gi|77413967|ref|ZP_00790141.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 515] gi|22533418|gb|AAM99306.1|AE014209_19 cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 2603V/R] gi|23094862|emb|CAD46080.1| Unknown [Streptococcus agalactiae NEM316] gi|76563497|gb|ABA46081.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae A909] gi|77160003|gb|EAO71140.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae 515] gi|77161612|gb|EAO72610.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae CJB111] gi|77172627|gb|EAO75766.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae COH1] gi|319744400|gb|EFV96759.1| cytidine/deoxycytidylate deaminase [Streptococcus agalactiae ATCC 13813] Length = 168 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM+ AL+ ++ L + C+IVKDG +IGRG A HAE+ A+ A E Sbjct: 12 FMTEALKEAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69 Query: 66 EARG-----ATAYVTLEPC 79 + T +VT+EPC Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88 >gi|324989861|gb|EGC21804.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK353] gi|325686683|gb|EGD28709.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK72] Length = 156 Score = 43.1 bits (100), Expect = 0.064, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|315284032|ref|ZP_07872011.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120] gi|313612324|gb|EFR86487.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120] Length = 156 Score = 43.1 bits (100), Expect = 0.065, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 61/137 (44%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME+E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEAESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ +++ KR+ + Sbjct: 139 MLKSFF-QELRKRNKLN 154 >gi|327472530|gb|EGF17961.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK408] Length = 156 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|16801927|ref|NP_472195.1| hypothetical protein lin2867 [Listeria innocua Clip11262] gi|16415402|emb|CAC98093.1| lin2867 [Listeria innocua Clip11262] Length = 154 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 21/134 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T HAE+ A+E+A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETTQNAVTHAELLAIEDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + ++E+E Sbjct: 83 ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCKVEAGLLEAESSA 138 Query: 137 FLHAYLTRQVEKRS 150 L ++ R++ KR Sbjct: 139 MLKSFF-RELRKRK 151 >gi|15923548|ref|NP_371082.1| cytosine deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|15926236|ref|NP_373769.1| hypothetical protein SA0516 [Staphylococcus aureus subsp. aureus N315] gi|21282242|ref|NP_645330.1| hypothetical protein MW0513 [Staphylococcus aureus subsp. aureus MW2] gi|49485423|ref|YP_042644.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476] gi|87160687|ref|YP_493246.1| putative deaminase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88194321|ref|YP_499113.1| hypothetical protein SAOUHSC_00541 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148267018|ref|YP_001245961.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus subsp. aureus JH9] gi|150393065|ref|YP_001315740.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp. aureus JH1] gi|151220732|ref|YP_001331554.1| hypothetical protein NWMN_0520 [Staphylococcus aureus subsp. aureus str. Newman] gi|156978887|ref|YP_001441146.1| hypothetical protein SAHV_0556 [Staphylococcus aureus subsp. aureus Mu3] gi|161508798|ref|YP_001574457.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141004|ref|ZP_03565497.1| deaminase [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315668|ref|ZP_04838881.1| putative deaminase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732567|ref|ZP_04866732.1| deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|255005352|ref|ZP_05143953.2| putative deaminase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257795343|ref|ZP_05644322.1| deaminase [Staphylococcus aureus A9781] gi|258408970|ref|ZP_05681251.1| deaminase [Staphylococcus aureus A9763] gi|258420392|ref|ZP_05683335.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719] gi|258422595|ref|ZP_05685501.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635] gi|258439312|ref|ZP_05690244.1| cytosine deaminase [Staphylococcus aureus A9299] gi|258444052|ref|ZP_05692389.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115] gi|258446321|ref|ZP_05694479.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300] gi|258448414|ref|ZP_05696529.1| deaminase [Staphylococcus aureus A6224] gi|258452708|ref|ZP_05700706.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|258453770|ref|ZP_05701744.1| cytosine deaminase [Staphylococcus aureus A5937] gi|262049601|ref|ZP_06022470.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30] gi|262052438|ref|ZP_06024638.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3] gi|269202181|ref|YP_003281450.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ED98] gi|282894994|ref|ZP_06303217.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117] gi|282924473|ref|ZP_06332145.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765] gi|282928896|ref|ZP_06336487.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102] gi|294850335|ref|ZP_06791069.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754] gi|295406935|ref|ZP_06816738.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819] gi|297208728|ref|ZP_06925156.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246241|ref|ZP_06930090.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796] gi|300912818|ref|ZP_07130260.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus TCH70] gi|304381843|ref|ZP_07364490.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|13700450|dbj|BAB41747.1| SA0516 [Staphylococcus aureus subsp. aureus N315] gi|14246326|dbj|BAB56720.1| similar to cytosine deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|21203678|dbj|BAB94378.1| MW0513 [Staphylococcus aureus subsp. aureus MW2] gi|49243866|emb|CAG42291.1| putative deaminase [Staphylococcus aureus subsp. aureus MSSA476] gi|87126661|gb|ABD21175.1| putative deaminase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201879|gb|ABD29689.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147740087|gb|ABQ48385.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus JH9] gi|149945517|gb|ABR51453.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus subsp. aureus JH1] gi|150373532|dbj|BAF66792.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156721022|dbj|BAF77439.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367607|gb|ABX28578.1| deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253729496|gb|EES98225.1| deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|257789315|gb|EEV27655.1| deaminase [Staphylococcus aureus A9781] gi|257840321|gb|EEV64784.1| deaminase [Staphylococcus aureus A9763] gi|257843582|gb|EEV67988.1| tRNA-adenosine deaminase [Staphylococcus aureus A9719] gi|257847167|gb|EEV71175.1| CMP/dCMP deaminase, zinc-binding [Staphylococcus aureus A9635] gi|257847649|gb|EEV71648.1| cytosine deaminase [Staphylococcus aureus A9299] gi|257850722|gb|EEV74667.1| tRNA-adenosine deaminase [Staphylococcus aureus A8115] gi|257854915|gb|EEV77860.1| CMP/dCMP deaminase zinc-binding [Staphylococcus aureus A6300] gi|257858283|gb|EEV81170.1| deaminase [Staphylococcus aureus A6224] gi|257859581|gb|EEV82431.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257864026|gb|EEV86780.1| cytosine deaminase [Staphylococcus aureus A5937] gi|259159684|gb|EEW44728.1| hypothetical protein SA930_0274 [Staphylococcus aureus 930918-3] gi|259162341|gb|EEW46914.1| hypothetical protein SAD30_0395 [Staphylococcus aureus D30] gi|262074471|gb|ACY10444.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ED98] gi|269940131|emb|CBI48507.1| putative deaminase [Staphylococcus aureus subsp. aureus TW20] gi|282589504|gb|EFB94593.1| tRNA-adenosine deaminase [Staphylococcus aureus A10102] gi|282592884|gb|EFB97888.1| tRNA-adenosine deaminase [Staphylococcus aureus A9765] gi|282762676|gb|EFC02813.1| tRNA-adenosine deaminase [Staphylococcus aureus A8117] gi|285816259|gb|ADC36746.1| tRNA-specific adenosine-34 deaminase [Staphylococcus aureus 04-02981] gi|294822847|gb|EFG39282.1| tRNA-adenosine deaminase [Staphylococcus aureus A9754] gi|294968166|gb|EFG44192.1| tRNA-adenosine deaminase [Staphylococcus aureus A8819] gi|296886673|gb|EFH25578.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176839|gb|EFH36097.1| tRNA-adenosine deaminase [Staphylococcus aureus A8796] gi|300885922|gb|EFK81125.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus TCH70] gi|302332271|gb|ADL22464.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus JKD6159] gi|302750450|gb|ADL64627.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339629|gb|EFM05576.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312829054|emb|CBX33896.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128851|gb|EFT84850.1| deaminase [Staphylococcus aureus subsp. aureus CGS03] gi|315196629|gb|EFU26976.1| deaminase [Staphylococcus aureus subsp. aureus CGS01] gi|320141577|gb|EFW33416.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus aureus subsp. aureus MRSA131] gi|320141794|gb|EFW33622.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus aureus subsp. aureus MRSA177] gi|323439830|gb|EGA97547.1| putative deaminase [Staphylococcus aureus O11] gi|323443069|gb|EGB00689.1| putative deaminase [Staphylococcus aureus O46] gi|329313279|gb|AEB87692.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus T0131] gi|329727928|gb|EGG64377.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus aureus subsp. aureus 21172] gi|329731027|gb|EGG67400.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus aureus subsp. aureus 21189] gi|329731987|gb|EGG68343.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus aureus subsp. aureus 21193] Length = 156 Score = 43.1 bits (100), Expect = 0.066, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|332365217|gb|EGJ42980.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1059] Length = 179 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 35 FMREALKEA--EIALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 92 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 93 HENSWRLLDTTLFVTIEPC 111 >gi|327459989|gb|EGF06328.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1] Length = 156 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|210623915|ref|ZP_03294124.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275] gi|210153279|gb|EEA84285.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275] Length = 371 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 52/107 (48%), Gaps = 17/107 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAY--GGCPHAEVQAL 60 S D FM ALR ++ T + +IVKDG +IGRG +T + H+E+ A+ Sbjct: 224 SDDEYFMMEALREAKKAYDKEET--PIGAVIVKDGEIIGRGHNLTEHLKDATAHSEILAI 281 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + A ++ + G YVT+EPC C I+ IR VV+ Sbjct: 282 KNAAKKLKGWRLFGCKMYVTMEPC------VMCCGAIVNSRIREVVI 322 >gi|217967615|ref|YP_002353121.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724] gi|217336714|gb|ACK42507.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724] Length = 156 Score = 43.1 bits (100), Expect = 0.067, Method: Compositional matrix adjust. Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 11/85 (12%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQA 59 SS D FM A++ ++ L V +IV +G ++GRG + HAE+ A Sbjct: 6 SSIDEYFMHEAIKEAK--KALRKGEVPVGAVIVYNGQIVGRGYNLRESKKNPISHAEMIA 63 Query: 60 LEEAGEEARG-----ATAYVTLEPC 79 +E+A ++ +G T YVTLEPC Sbjct: 64 IEKAAKKLKGWRLCNCTLYVTLEPC 88 >gi|91201071|emb|CAJ74129.1| strongly similar to fungal cytosine deaminase [Candidatus Kuenenia stuttgartiensis] Length = 145 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 14/100 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 RFM A+ ++ GL + ++VKDG +IGRG V HAE+ L +G Sbjct: 3 RFMRTAIEEAKQ--GLLEGGIPIGSVLVKDGEIIGRGHNKRVQENNPIAHAEIDCLVNSG 60 Query: 65 EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + G T Y TL PC CA I++ I+++VV Sbjct: 61 RVGKYSGTTLYSTLMPCY------LCAGAIVQFRIKKIVV 94 >gi|323344020|ref|ZP_08084246.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269] gi|323094749|gb|EFZ37324.1| cytidine/deoxycytidylate deaminase [Prevotella oralis ATCC 33269] Length = 148 Score = 43.1 bits (100), Expect = 0.068, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 50/125 (40%), Gaps = 35/125 (28%) Query: 3 VSSFDARFMSAALRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----- 53 ++S D + LR+ R W V L+VK+ ++I G Y G P Sbjct: 1 MTSADEKQQKLDLRYLRMARVWAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFEN 57 Query: 54 --------------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE A L + + G+T YVT PC CA+ II+ G Sbjct: 58 VCEDENSITKPYVLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAG 111 Query: 97 IRRVV 101 I+RVV Sbjct: 112 IKRVV 116 >gi|260893961|ref|YP_003240058.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4] gi|260866102|gb|ACX53208.1| CMP/dCMP deaminase zinc-binding protein [Ammonifex degensii KC4] Length = 151 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSH 81 V + V +G +IGRG T HAE+ AL EA ++ T Y TLEPC Sbjct: 19 VGAVAVLNGEIIGRGHNLRETLKDATAHAEILALREAAKKIGDWRLEEVTLYTTLEPC-- 76 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG------RGLQWLSQKGIIVDRMMESEGK 135 P CA +I+ ++RVV DP +G R ++ Q ++ + E G Sbjct: 77 ----PMCAGALIQFRVKRVVFGAFDPKAGAAGSVVDLLRDPRFNHQVEVVGGVLAEESGA 132 Query: 136 IFLHAYLTRQVEKRS 150 + + ++E+R Sbjct: 133 LLKRFFQELRMERRD 147 >gi|298693889|gb|ADI97111.1| cytosine deaminase [Staphylococcus aureus subsp. aureus ED133] Length = 156 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|253577340|ref|ZP_04854657.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786 str. D14] gi|251843240|gb|EES71271.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786 str. D14] Length = 165 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 20/131 (15%) Query: 2 PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P S++ + M+ A+R +R + + +IV+ ++GRG ++ G HAE Sbjct: 12 PASTYPHEYWMAEAIREARKAEAIGEV--PIGAVIVRGDEIVGRGHNLRESSLDGTAHAE 69 Query: 57 VQALEEAGEEARGATA------YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 + A+ EA E GA YVTLEPC P CA I++C + V+ DP Sbjct: 70 MIAIREASERL-GAWRLLHCRLYVTLEPC------PMCAGAIVQCRVPHVIYGAPDPKAG 122 Query: 111 VSGRGLQWLSQ 121 +G + L + Sbjct: 123 CAGTLMNLLQE 133 >gi|212695506|ref|ZP_03303634.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM 7454] gi|212677506|gb|EEB37113.1| hypothetical protein ANHYDRO_00023 [Anaerococcus hydrogenalis DSM 7454] Length = 180 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 25/138 (18%) Query: 31 VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + C+IVK+G +I R Y G HAE+ A+++A + T YVT+EPCS Sbjct: 45 IGCVIVKNGKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCS- 103 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD-------PDVRVSG--RGLQWL-SQKGIIVDRMME 131 CA II I R+V+ + D + ++G L +L ++ G++ D+ +E Sbjct: 104 -----MCAGAIINSRIDRLVIALADVKRGACGSNTNITGDRSQLHFLDAEFGLMKDQSLE 158 Query: 132 SEGKIFLHAYLTRQVEKR 149 F R+ EK+ Sbjct: 159 ILQSFFKKLRDRRKKEKK 176 >gi|213403097|ref|XP_002172321.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Schizosaccharomyces japonicus yFS275] gi|212000368|gb|EEB06028.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Schizosaccharomyces japonicus yFS275] Length = 147 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 14/134 (10%) Query: 25 TSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQAL-----EEAGEEARGATAYVTLEP 78 T T V +IV++G V+ G + G HAE A+ + + + Y T+EP Sbjct: 19 TDTAFCVGSVIVENGQVVSTGYSRELPGNTHAEESAILKLLQRDPKHDFTRSVIYSTMEP 78 Query: 79 CS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 CS + PC Q II +VV+ +P V G++ L GIIV+ ++ + + Sbjct: 79 CSKRLSGNVPCTQHIIANKFHKVVLGCREPTTFVVCEGVRQLQAAGIIVEEDLQFQDECL 138 Query: 138 LHAYLTRQVEKRSH 151 +V K+SH Sbjct: 139 -------RVAKQSH 145 >gi|188996445|ref|YP_001930696.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1] gi|188931512|gb|ACD66142.1| CMP/dCMP deaminase zinc-binding [Sulfurihydrogenibium sp. YO3AOP1] Length = 149 Score = 43.1 bits (100), Expect = 0.071, Method: Compositional matrix adjust. Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 17/111 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 ++ +F+ A++ + L V +IVKDG +I + ++ HAE+ A+ Sbjct: 2 NYHKKFIDQAVKEA--EKALKKNEVPVGAVIVKDGKIISKAHNQRISKNNALYHAEILAI 59 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 E++ ++ + A Y TLEPC CA +++ I++VV C D Sbjct: 60 EKSCKKLKTWRLDDAVLYTTLEPCLM------CAGAVMQARIKKVVFCAKD 104 >gi|332883144|gb|EGK03427.1| hypothetical protein HMPREF9456_01494 [Dysgonomonas mossii DSM 22836] Length = 149 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 46/118 (38%), Gaps = 34/118 (28%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------ 53 D R+M A + W V LIVKD ++I G Y G P Sbjct: 9 LDERYMRMA---AIWAENSYCKRRKVGALIVKDKMIISDG---YNGTPSGFENICEDENN 62 Query: 54 -------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + GAT YVT PC CA+ II+ GI RVV Sbjct: 63 ETKAYVLHAEANAITKVACSHNSSLGATMYVTTSPC------IECAKLIIQAGITRVV 114 >gi|288800764|ref|ZP_06406221.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp. oral taxon 299 str. F0039] gi|288332225|gb|EFC70706.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp. oral taxon 299 str. F0039] Length = 143 Score = 43.1 bits (100), Expect = 0.072, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V ++VKD ++I G Y G P Sbjct: 11 LDIRY----LRMARIWAENSYCERRKVGAIVVKDKMIISDG---YNGTPEGFENVCEDSN 63 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + GAT YVT PC C++ II+ GI+RVV Sbjct: 64 QITKPYVLHAEANAITKLARSSNNSEGATLYVTASPCIE------CSKLIIQSGIKRVV 116 >gi|332358122|gb|EGJ35954.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK49] Length = 156 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|239825602|ref|YP_002948226.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70] gi|239805895|gb|ACS22960.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70] Length = 160 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+DG +I R T HAE+ A+++A +E AT YVTLEPC+ Sbjct: 26 IGAIIVQDGHIIARAHNLRETEQRAIAHAEILAIDKACKEVGSWRLEDATLYVTLEPCAM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I+RVV DP +G + L + + + ++ E Sbjct: 86 ------CAGAIVLARIKRVVFGASDPKGGCAGTLMNLLQEGRFNHQAEVTSGILGEECGQ 139 Query: 137 FLHAYLTRQVEKRSHI 152 L ++ + EK+ +I Sbjct: 140 MLSSFFRKLREKKKNI 155 >gi|103488226|ref|YP_617787.1| CMP/dCMP deaminase, zinc-binding [Sphingopyxis alaskensis RB2256] gi|98978303|gb|ABF54454.1| tRNA-adenosine deaminase [Sphingopyxis alaskensis RB2256] Length = 155 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 52/127 (40%), Gaps = 20/127 (15%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81 V +IVKDG VI G ++ HAE+ A+ A E G YVTLEPC+ Sbjct: 28 VGAVIVKDGAVIAEGHNRPRESHDPTAHAEIVAMRMAAAKLGNERLDGCDLYVTLEPCAM 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA I I R+ DDP G + +Q + I D + ESE Sbjct: 88 ------CAGAIAHARIARLYYGADDPKGGAVVHGPRLFAQPTVHHRPEIYDGIGESEAAG 141 Query: 137 FLHAYLT 143 L A+ Sbjct: 142 LLRAFFA 148 >gi|291521262|emb|CBK79555.1| Cytosine/adenosine deaminases [Coprococcus catus GD/7] Length = 160 Score = 43.1 bits (100), Expect = 0.073, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + C+IV +G +I RG HAE+ A+ +A + G T Y+TLEPC Sbjct: 26 IGCVIVYEGKIIARGYNKRNKEKNTLSHAEMNAIRKASKYLGDWRLEGCTMYITLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P CA I++ + RVV+ + +G L L ++ Sbjct: 84 ----PMCAGAIVQARVDRVVIGSMNAKAGCAGSVLNVLQER 120 >gi|327463521|gb|EGF09840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1057] gi|327467872|gb|EGF13362.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK330] Length = 156 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|322374121|ref|ZP_08048655.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. C150] gi|321277087|gb|EFX54158.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. C150] Length = 172 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKDG ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDGEIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TIGNWRLLDCTLFVTIEPC 88 >gi|212540050|ref|XP_002150180.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224] gi|210067479|gb|EEA21571.1| cytosine deaminase, putative [Penicillium marneffei ATCC 18224] Length = 148 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 47/106 (44%), Gaps = 18/106 (16%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P ACL+ KDG ++GRG H E+ ALE +G GAT Y TL PC Sbjct: 24 PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C I ++RVVV + + G Q+L +GI V Sbjct: 84 M------CTGACILYKVKRVVVGENKTFL----GGEQYLQSRGIEV 119 >gi|312959178|ref|ZP_07773697.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas fluorescens WH6] gi|311286948|gb|EFQ65510.1| cytidine/deoxycytidylate deaminase family protein [Pseudomonas fluorescens WH6] Length = 165 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 43/155 (27%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL + G V ++V+DG +IGRG CP HAE Sbjct: 13 SRDQHFMREALALAAQ--GAVLGEVPVGAVLVQDGEIIGRGFN----CPISGNDPSAHAE 66 Query: 57 V-----QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A + G+T YVTLEPCS CA I+ I RVV +P Sbjct: 67 MVAIRAAARAISNYRLVGSTLYVTLEPCSM------CAGLIVHSRIARVVYGALEP---- 116 Query: 112 SGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQV 146 + GI+ +S+G+ F +L +V Sbjct: 117 ---------KAGIV-----QSQGQFFTQGFLNHRV 137 >gi|288906283|ref|YP_003431505.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus gallolyticus UCN34] gi|306832338|ref|ZP_07465492.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325979296|ref|YP_004289012.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733009|emb|CBI14590.1| putative cytidine/deoxycytidylate deaminase family protein [Streptococcus gallolyticus UCN34] gi|304425777|gb|EFM28895.1| tRNA-specific adenosine deaminase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325179224|emb|CBZ49268.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 168 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVK+G++IGRG A HAE+ A+++A E Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGVIIGRGHNAREERQKAILHAEIMAIDDANE 69 Query: 66 EARG-----ATAYVTLEPC 79 +T +VT+EPC Sbjct: 70 NEGSWRLLDSTLFVTIEPC 88 >gi|251772814|gb|EES53374.1| putative zinc-binding cytidine/deoxycytidylate deaminase [Leptospirillum ferrodiazotrophum] Length = 158 Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 18/121 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 P D FM+ AL +R G+ P V ++V G ++G GV ++ HAE+ Sbjct: 7 PNHQADVYFMNKALNLARN--GIVDDVP-VGAIVVVGGEIVGEGVNQGRASHDPTAHAEI 63 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL A +T YVTLEPC C ++E I R+V DP V+ Sbjct: 64 IALRRAAARLENYRLPLSTLYVTLEPCLM------CLGAMMEGRIHRLVFGARDPKRGVA 117 Query: 113 G 113 G Sbjct: 118 G 118 >gi|125718966|ref|YP_001036099.1| hypothetical protein SSA_2184 [Streptococcus sanguinis SK36] gi|125498883|gb|ABN45549.1| Conserved hypothetical protein [Streptococcus sanguinis SK36] Length = 156 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEAE--IALAHDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|88801568|ref|ZP_01117096.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P] gi|88782226|gb|EAR13403.1| deoxycytidylate deaminase [Polaribacter irgensii 23-P] Length = 141 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 32/138 (23%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC--------- 52 +D ++ AL W V LIVK+ ++I G T + C Sbjct: 9 YDRAYLKMALE---WGKLSHCKRKQVGALIVKNRMIISDGFNGTPTGFENCCEDSSGNTK 65 Query: 53 ---PHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 HAE A+ + + A GAT Y+TL PC+ C++ I + GI+RVV Sbjct: 66 WEVLHAEANAILKVASSTQSAEGATLYITLSPCTQ------CSKLIHQAGIKRVVYANAY 119 Query: 107 PDVRVSGRGLQWLSQKGI 124 D GL++L + G+ Sbjct: 120 KD----DAGLKFLEKAGV 133 >gi|119468555|ref|ZP_01611646.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7] gi|119448063|gb|EAW29328.1| tRNA-specific adenosine deaminase [Alteromonadales bacterium TW-7] Length = 165 Score = 42.7 bits (99), Expect = 0.078, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62 +A +M AL +++ L V ++VKD +I R +T HAE+ A+ E Sbjct: 7 NAYWMEQALLYAKQAEQLNEI--PVGAVLVKDNQLIASGYNRSITDNDPSAHAEMIAVRE 64 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ T YVTLEPCS CA ++ I+R+V D +G + Sbjct: 65 AGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAPDAKTGSAGSIMN 118 Query: 118 WLSQ 121 L + Sbjct: 119 LLQE 122 >gi|269126069|ref|YP_003299439.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata DSM 43183] gi|268311027|gb|ACY97401.1| CMP/dCMP deaminase zinc-binding protein [Thermomonospora curvata DSM 43183] Length = 151 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 71 TAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 T Y +LEPC R PCA+ I E GI RVV +P + V G G Q L GI V R+ Sbjct: 76 TIYSSLEPCGRRLSRPRPCARLIAEAGIGRVVYAWREPVLFVEGGGEQVLRAAGIEVVRI 135 Query: 130 ME 131 + Sbjct: 136 AD 137 >gi|226946009|ref|YP_002801082.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter vinelandii DJ] gi|226720936|gb|ACO80107.1| Cytidine/deoxycytidylate deaminase-like protein [Azotobacter vinelandii DJ] Length = 158 Score = 42.7 bits (99), Expect = 0.080, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 66/156 (42%), Gaps = 30/156 (19%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--------HAE 56 S D FM AL + GL V ++V+ G ++GRG CP HAE Sbjct: 10 SQDEHFMREALVLAAEGAGLGEV--PVGAVLVRGGEIVGRGFN----CPISRRDPSAHAE 63 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A G+T YVTLEPCS CA I+ + RVV +P V Sbjct: 64 MVAIRAAAAALDNYRLPGSTLYVTLEPCSM------CAGLIVHARVARVVFGASEPRAGV 117 Query: 112 S-GRG----LQWLSQKGIIVDRMMESEGKIFLHAYL 142 + RG +L+ + +I ++ E L A+ Sbjct: 118 AVSRGDFFAQDFLNHRVLIEGGLLAEECGAILKAFF 153 >gi|332882408|ref|ZP_08450036.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679792|gb|EGJ52761.1| ComE operon protein 2 family protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 149 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 36/119 (30%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 D R+ LR +R W V LIVKD ++I G Y G P Sbjct: 10 ELDLRY----LRMARIWAENSYCERRKVGALIVKDKMIISDG---YNGTPAGFENVCEDE 62 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A+ + +G + GAT YVT PC C++ II+ GI+RV Sbjct: 63 NHLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKRV 115 >gi|325183042|emb|CCA17497.1| riboflavinspecific deaminase/GTP cyclohydrolase II putative [Albugo laibachii Nc14] Length = 219 Score = 42.7 bits (99), Expect = 0.081, Method: Compositional matrix adjust. Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 52/179 (29%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K ITL A S D I ++G SK H+LR IL+GIGT+++D+P L Sbjct: 31 KYPMITLTYAQSIDGCIAAKKGSPTILSGSASKRMTHVLRTLHQGILIGIGTLISDNPSL 90 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN- 266 T + ++ T+ ++AL RKK + Sbjct: 91 TSQ------------------------DLVSTS--------------IVALQSRKKALEQ 112 Query: 267 ----IIYCD--CRD-------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 II C+ C L + +L G S++VEGGA + S + + + S++ Sbjct: 113 AGAVIIECESICTSEGAQHVHLSRAFELLHNYGFESIMVEGGAGIITSCLREQTIFSLV 171 >gi|254499275|ref|ZP_05111951.1| deaminase [Legionella drancourtii LLAP12] gi|254351519|gb|EET10378.1| deaminase [Legionella drancourtii LLAP12] Length = 143 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 20/128 (15%) Query: 29 PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ +G ++G A + HAEV+ + +A ++ + T YVTLEPC Sbjct: 18 PVGAVLVSNEGELLGASRNAVQNSHDPSDHAEVRVIRQAAQQLKNHRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW-----LSQKGIIVDRMMESEG 134 P CA I+ I+RVV D +G L+ K I + +M+SE Sbjct: 78 ------PMCAGLIVHARIKRVVFATRDFKAGAAGSVYNLLQGYPLNHKVQIDEGIMQSEC 131 Query: 135 KIFLHAYL 142 + L + Sbjct: 132 ALLLSDFF 139 >gi|88192205|pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna gi|88192206|pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna gi|88192207|pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna gi|88192208|pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine Deaminase, Tada, In Complex With Rna Length = 159 Score = 42.7 bits (99), Expect = 0.082, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 7 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 65 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 118 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 119 LLQQSNFNHRAIVDK 133 >gi|323435986|ref|ZP_01049493.2| dCMP deaminase [Dokdonia donghaensis MED134] gi|321496301|gb|EAQ39465.2| dCMP deaminase [Dokdonia donghaensis MED134] Length = 142 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR +R L+ N V +IVKD ++I G Y G P Sbjct: 7 KYDIAYLRMAREWGKLSYCNRKQVGAIIVKDKMIISDG---YNGTPTGFENVCEDEENNT 63 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+TL PC C++ + + GI+RVV Sbjct: 64 KWYVLHAEANAILKVASSTQSCHGATLYITLSPC------KDCSKLVHQAGIKRVVYHSA 117 Query: 106 DPDVRVSGRGLQWLSQKGI 124 D+ G+++L + G+ Sbjct: 118 YKDL----TGVKFLEKAGV 132 >gi|196251180|ref|ZP_03149855.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16] gi|196209306|gb|EDY04090.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16] Length = 169 Score = 42.7 bits (99), Expect = 0.083, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+DG VI R T HAE+ A++EA + AT YVTLEPC+ Sbjct: 35 IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIDEACQATGSWRLERATLYVTLEPCAM 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I RVV DP +G + L + + + ++ SE Sbjct: 95 ------CAGAIVLSRIERVVFGASDPKGGCAGTLMNLLQESRFNHQADVTSGVLASECGS 148 Query: 137 FLHAYLTRQVEKRSHI 152 L + R E++ ++ Sbjct: 149 LLSDFFRRLRERKKNV 164 >gi|193213141|ref|YP_001999094.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327] gi|193086618|gb|ACF11894.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327] Length = 152 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 20/128 (15%) Query: 29 PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79 P A ++ +G+VIGRG T HAE+ AL A + G T VTLEPC Sbjct: 25 PVGAVVLDPNGLVIGRGYNQVETLSDATAHAEMIALTSAMATLDNKYLEGCTLAVTLEPC 84 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRMMESEG 134 P CA I+ I RVV DP + SG G L+ + + +ME + Sbjct: 85 ------PMCAGAIVLSKISRVVFGAWDPKMGASGTVLNVTGCSALNHQPEVYGGIMEHKA 138 Query: 135 KIFLHAYL 142 + L + Sbjct: 139 ESLLQDFF 146 >gi|87121678|ref|ZP_01077565.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp. MED121] gi|86162929|gb|EAQ64207.1| cytidine/deoxycytidylate deaminase family protein [Marinomonas sp. MED121] Length = 162 Score = 42.7 bits (99), Expect = 0.084, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D +IG G ++ HAE+QA+ +A + AT YVTLEPCS Sbjct: 19 VGAILVLDNEIIGEGYNSPISTCDPTAHAEIQAIRDACKNVANYRLPKATLYVTLEPCSM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I+ I RVV +P V Q+ Q Sbjct: 79 ------CAGAIVHARIARVVYAATEPKSGVVESQNQFFEQ 112 >gi|20428822|emb|CAD21697.1| hypothetical protein [Azoarcus evansii] Length = 154 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 21/127 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AL +R G P V ++V DG ++GRG + + HAEV AL + Sbjct: 3 DEDYMRVALEQAR-EAGSCDEVP-VGAVVVLDGEIVGRGFNQPIGRHDPTAHAEVMALRD 60 Query: 63 AGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A AR G YVTLEPC+ C+ I+ I RVV DP V+G Sbjct: 61 AA--ARLGNYRLPGCELYVTLEPCAM------CSGAIMHSRIARVVFGARDPKTGVAGSV 112 Query: 116 LQWLSQK 122 + ++ Sbjct: 113 IDLFAES 119 >gi|75911133|ref|YP_325429.1| cytidine/deoxycytidylate deaminase [Anabaena variabilis ATCC 29413] gi|75704858|gb|ABA24534.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Anabaena variabilis ATCC 29413] Length = 143 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 12/78 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE--EARGATAYVTLEPCSHYGR 84 + ++VKDG ++GRG V HAE+ L AG RG T Y TL PC Sbjct: 23 IGSVLVKDGKILGRGHNKRVQDRDPVTHAEIDCLRNAGRIGSYRGTTLYSTLMPCY---- 78 Query: 85 SPPCAQFIIECGIRRVVV 102 CA +++ GI++V+V Sbjct: 79 --LCAGAVVQFGIKKVIV 94 >gi|153956292|ref|YP_001397057.1| deaminase [Clostridium kluyveri DSM 555] gi|219856609|ref|YP_002473731.1| hypothetical protein CKR_3266 [Clostridium kluyveri NBRC 12016] gi|146349150|gb|EDK35686.1| Predicted deaminase [Clostridium kluyveri DSM 555] gi|219570333|dbj|BAH08317.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 141 Score = 42.7 bits (99), Expect = 0.086, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Query: 54 HAEVQALEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAEV L E + R +T YVT PC P C + II CG++RV+ C D Sbjct: 72 HAEVNCLLEVSPDDRENSTLYVTHMPC------PECQKLIINCGVKRVIYCED 118 >gi|167771010|ref|ZP_02443063.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM 17241] gi|167666680|gb|EDS10810.1| hypothetical protein ANACOL_02364 [Anaerotruncus colihominis DSM 17241] Length = 151 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D FM ALR + V ++V DG ++G G T HAE++A++ Sbjct: 3 DNDFMGEALRLA--GCAAERGEVPVGAVVVCDGQIVGTGFNRRETGKNALAHAELEAIDA 60 Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A G YVTLEPC P CA II IRR+V DP Sbjct: 61 ACRRLGGWRLHRCELYVTLEPC------PMCAGAIINARIRRLVFGARDP 104 >gi|38677840|emb|CAE82258.1| putative cytosine deaminase [Candida albicans] Length = 150 Score = 42.7 bits (99), Expect = 0.087, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 24/111 (21%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA----GEEARGATAYVTLEPCS 80 P +C+I DG V+G+G + + H E+ ALE A G+ + T Y TL PCS Sbjct: 26 PIGSCIISSDGTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 C I+ G +RVV+ G + +L + ++++ +E Sbjct: 86 M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLIENGVE 120 >gi|269838886|ref|YP_001949988.2| deoxycytidylate deaminase domain like protein [Ralstonia phage RSL1] gi|239793682|dbj|BAG41558.2| deoxycytidylate deaminase domain like protein [Ralstonia phage RSL1] Length = 145 Score = 42.7 bits (99), Expect = 0.088, Method: Compositional matrix adjust. Identities = 33/82 (40%), Positives = 37/82 (45%), Gaps = 13/82 (15%) Query: 51 GCPHAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 G HAEV A L AG GAT Y+TL PC PCA I GI RVV Sbjct: 74 GVTHAEVNAIGKLAAAGISCAGATLYLTLSPCV------PCANLIQRSGIERVVYETQYR 127 Query: 108 DVRVSGRGLQWLSQKGIIVDRM 129 DV G+ L+ GI V + Sbjct: 128 DV----EGINLLTGCGIAVQKF 145 >gi|315659096|ref|ZP_07911961.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590] gi|315495820|gb|EFU84150.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590] Length = 158 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 20/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKD VI R T+ HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIERASEVLGSWRLEACTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I RVV DP SG + L Q + I+ ++E E Sbjct: 86 ------CAGAIVMSRIPRVVYGAIDPKGGCSGSLMNLLEQPQFNHQAIVKTGVLEQECGQ 139 Query: 137 FLHAYLTRQVEKR 149 L ++ R EK+ Sbjct: 140 LLRSFFQRLREKK 152 >gi|289551636|ref|YP_003472540.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis HKU09-01] gi|289181167|gb|ADC88412.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis HKU09-01] Length = 158 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 43/133 (32%), Positives = 56/133 (42%), Gaps = 20/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKD VI R T+ HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIERASEVLGSWRLEACTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I RVV DP SG + L Q + I+ ++E E Sbjct: 86 ------CAGAIVMSRIPRVVYGAIDPKGGCSGSLMNLLEQPQLNHQAIVKTGVLEQECGQ 139 Query: 137 FLHAYLTRQVEKR 149 L ++ R EK+ Sbjct: 140 LLRSFFQRLREKK 152 >gi|284023569|ref|ZP_06377967.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus 132] Length = 156 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIFFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|289644955|ref|ZP_06476996.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca glomerata] gi|289505228|gb|EFD26286.1| CMP/dCMP deaminase zinc-binding [Frankia symbiont of Datisca glomerata] Length = 224 Score = 42.7 bits (99), Expect = 0.092, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 71 TAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T Y +LEPCS P C + IIE GIRRVV +P+V V G + + + G+ V Sbjct: 149 TLYSSLEPCSARASRPRTCTELIIEAGIRRVVFAWREPEVFVDCEGAEIMRRAGLDV 205 >gi|167758650|ref|ZP_02430777.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704] gi|167663846|gb|EDS07976.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704] Length = 157 Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 + S D ++M A+R +R + + C+IV +IGRG + HAE+ Sbjct: 1 MHSIDEKYMKEAIRQARKAYAIGEV--PIGCVIVYKDKIIGRGYNRRMADKNTLSHAELI 58 Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + T YVTLEPC C+ I++ + RVVV +P +G Sbjct: 59 AIRKASRKMGDWRLEECTMYVTLEPCQM------CSGAIVQSRMSRVVVGCMNPKAGCAG 112 Query: 114 RGLQWLS 120 L L Sbjct: 113 SILNLLQ 119 >gi|331003430|ref|ZP_08326929.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412476|gb|EGG91865.1| hypothetical protein HMPREF0491_01791 [Lachnospiraceae oral taxon 107 str. F0167] Length = 155 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 24/160 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D F+ A++ ++ G P + C+IV + +I RG HAE+ A+++ Sbjct: 4 DNYFLKEAVKQAK-KAGEIGDVP-IGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T Y+TLEPC P CA II+ I+RVV+ +P +G + Sbjct: 62 ACKKIGDWRLEDCTMYITLEPC------PMCAGAIIQSRIKRVVLGAMNPKAGCAGSIIN 115 Query: 118 WLSQKGI-------IVDRMMESEGKIFLHAYLTRQVEKRS 150 L +G ++D + SE L ++ E + Sbjct: 116 ILQTEGFNHKTEISLIDEPLHSECVSLLTSFFKALRENKK 155 >gi|325970393|ref|YP_004246584.1| dCMP deaminase [Spirochaeta sp. Buddy] gi|324025631|gb|ADY12390.1| dCMP deaminase [Spirochaeta sp. Buddy] Length = 161 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 66/165 (40%), Gaps = 44/165 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A+ S + S +PS AC+I D ++G G Y G P Sbjct: 9 SWDEYFMGVAVLSS-----MRSKDPSTQVGACIINADHKIVGVG---YNGFPIGVNDDEV 60 Query: 54 -----------------HAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A+ A +G + YV L PC+ CA+ II+ Sbjct: 61 PWEREGAWLDTKYPYVCHAELNAILNAISSSLKGCSLYVGLFPCNE------CAKAIIQS 114 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFLH 139 GIR VV D + + +W+ Q G+ ++ + I + Sbjct: 115 GIREVVYLSDKYAEAENTKASKWMFDQTGVTYRKLEPAHSSILVQ 159 >gi|313631569|gb|EFR98838.1| tRNA-specific adenosine deaminase [Listeria seeligeri FSL N1-067] Length = 156 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 21/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACNHQKSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME+E Sbjct: 83 ----PMCSGAILLSRIDKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVESGLMEAESSE 138 Query: 137 FLHAYLTRQVEKR 149 L ++ +++ KR Sbjct: 139 MLKSFF-QELRKR 150 >gi|309800211|ref|ZP_07694392.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus infantis SK1302] gi|308116152|gb|EFO53647.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus infantis SK1302] Length = 166 Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM AL+ + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALKEA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANV 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 REESWRLLDCTLFVTIEPC 87 >gi|237653174|ref|YP_002889488.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T] gi|237624421|gb|ACR01111.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T] Length = 154 Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AAL +R G P V ++V G ++GRG + + HAE+ AL + Sbjct: 3 DEDYMRAALEQARA-AGAADEVP-VGAVVVCGGEIVGRGFNQPIGRHDPTAHAEIMALRD 60 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G YVTLEPC+ C+ I+ I RVV DP V+G L Sbjct: 61 AAAHLGNYRLPGCELYVTLEPCAM------CSGAIMHARIARVVFGARDPKTGVAGSVLD 114 Query: 118 WLSQ 121 ++ Sbjct: 115 LFAE 118 >gi|194289718|ref|YP_002005625.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG 19424] gi|193223553|emb|CAQ69558.1| tRNA-specific adenosine deaminase [Cupriavidus taiwanensis LMG 19424] Length = 194 Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 DAR+M AAL +R + + V ++V + +I RG + + HAE+QAL Sbjct: 26 DARYMRAALEEAR--LAEAAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQALRA 83 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVTLEPC+ C+ I+ +R VV DP +G + Sbjct: 84 AAQVIGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGSVVN 137 Query: 118 WLSQ 121 Q Sbjct: 138 LFEQ 141 >gi|313887628|ref|ZP_07821310.1| cytidine and deoxycytidylate deaminase zinc-binding region [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846237|gb|EFR33616.1| cytidine and deoxycytidylate deaminase zinc-binding region [Peptoniphilus harei ACS-146-V-Sch2b] Length = 150 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 11/82 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 + +FM ALR+ R L S + + C++VK+ +IG G HAE+ A+ Sbjct: 2 EIKFMKEALRYGRR--SLLSDDVPIGCVVVKNNKIIGYGYNKKEDLKNPTAHAEIMAISM 59 Query: 63 AGEEAR-----GATAYVTLEPC 79 A G YVTLEPC Sbjct: 60 AARHLNSYHLEGCDIYVTLEPC 81 >gi|332360091|gb|EGJ37905.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1056] Length = 156 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEA--EIALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|227504965|ref|ZP_03935014.1| bifunctional deaminase-reductase domain protein [Corynebacterium striatum ATCC 6940] gi|227198474|gb|EEI78522.1| bifunctional deaminase-reductase domain protein [Corynebacterium striatum ATCC 6940] Length = 225 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 65/130 (50%), Gaps = 10/130 (7%) Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR D ++VG GTV A+D E + G + M LD L+++SK+ + P Sbjct: 51 LRKWGDVVVVGAGTVKAEDYEGSSP--GAARIAVMSYSLD----LNVESKLFQVG--TPP 102 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I+T +++ A A R ++ D ++ ++ L +G T ++ EGG V +FI Sbjct: 103 LILTPDENVGTAAAQRLESAGATVLGTGDGSIQSVVAALHAQGWTRIVCEGGPGVYSAFI 162 Query: 304 NSRLVDSIIL 313 + LVD + L Sbjct: 163 AAGLVDKLYL 172 >gi|153815558|ref|ZP_01968226.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756] gi|317502188|ref|ZP_07960362.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088753|ref|ZP_08337663.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847200|gb|EDK24118.1| hypothetical protein RUMTOR_01794 [Ruminococcus torques ATCC 27756] gi|316896397|gb|EFV18494.1| tRNA-specific adenosine deaminase [Lachnospiraceae bacterium 8_1_57FAA] gi|330407276|gb|EGG86779.1| hypothetical protein HMPREF1025_01246 [Lachnospiraceae bacterium 3_1_46FAA] Length = 162 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 17/127 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 D ++M AA++ ++ + T + C+IV +G +IGRG T HAE++A+ Sbjct: 8 KLDEKYMRAAIKQAQKAYAINET--PIGCVIVYEGKIIGRGYNRRNTDKDPLAHAEIKAI 65 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A + T YVTLEPC CA II+ + RVVV +P +G Sbjct: 66 KKASKKMGDWRLEQCTMYVTLEPCQM------CAGAIIQSRLTRVVVGCMNPKAGCAGSV 119 Query: 116 LQWLSQK 122 L L K Sbjct: 120 LNLLDIK 126 >gi|91773185|ref|YP_565877.1| CMP/dCMP deaminase, zinc-binding [Methanococcoides burtonii DSM 6242] gi|91712200|gb|ABE52127.1| Cytosine deaminase [Methanococcoides burtonii DSM 6242] Length = 143 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 14/100 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 FM A+ +R GL S + ++V+D ++IG+G V HAE+ L +AG Sbjct: 3 EFMQVAIDEAR--SGLNSGGIPIGSVLVRDDLIIGKGHNLRVQQDDPMAHAEISCLRDAG 60 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 R + Y TL PC CA +++ GI++V+V Sbjct: 61 RVGSYRDSILYSTLMPCY------LCAGAVVQFGIKKVIV 94 >gi|113867903|ref|YP_726392.1| cytosine deaminase [Ralstonia eutropha H16] gi|113526679|emb|CAJ93024.1| cytosine deaminase [Ralstonia eutropha H16] Length = 200 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 53/124 (42%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 DAR+M AAL +R + + V ++V + +I RG + + HAE+QAL Sbjct: 26 DARYMRAALEEAR--LAEAAGEVPVGAVVVWNDTIIARGHNLPIRSVDPSAHAEMQALRA 83 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVTLEPC C+ I+ +R VV DP +G L Sbjct: 84 AAQVIGNYRMPECELYVTLEPCVM------CSGAILHARLRHVVFGAADPKTGAAGSVLN 137 Query: 118 WLSQ 121 Q Sbjct: 138 LFEQ 141 >gi|119897879|ref|YP_933092.1| cytidine deaminase [Azoarcus sp. BH72] gi|119670292|emb|CAL94205.1| cytidine deaminase [Azoarcus sp. BH72] Length = 154 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/118 (33%), Positives = 53/118 (44%), Gaps = 21/118 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AAL + H+ V ++V +G ++GRG + + HAEV AL + Sbjct: 3 DEMFMRAAL--EQAHLAGACDEVPVGAVVVCEGEIVGRGFNQPIGRHDPTAHAEVMALRD 60 Query: 63 AGEEAR-------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A AR G YVTLEPC C+ I+ I RVV DP V+G Sbjct: 61 AA--ARLGNYRLPGCELYVTLEPCVM------CSGAIMHARIARVVYGARDPKTGVAG 110 >gi|324995886|gb|EGC27797.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK678] gi|325695392|gb|EGD37292.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK150] gi|327488579|gb|EGF20379.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1058] gi|328944679|gb|EGG38840.1| tRNA-specific adenosine deaminase [Streptococcus sanguinis SK1087] Length = 156 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + + L + C++VK+G +IGRG A HAE+ A+EEA Sbjct: 12 FMREALKEA--EIALAYDEIPIGCVLVKEGKIIGRGHNAREELQRAVMHAEIMAIEEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 HENSWRLLDTTLFVTIEPC 88 >gi|15643170|ref|NP_228214.1| deoxycytidylate deaminase, putative [Thermotoga maritima MSB8] gi|4980909|gb|AAD35489.1|AE001720_3 deoxycytidylate deaminase, putative [Thermotoga maritima MSB8] Length = 201 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ I+ GI+RVV D PD Sbjct: 128 HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLIVNAGIKRVVYEKDYPD 179 >gi|293376812|ref|ZP_06623032.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sanguinis PC909] gi|325845379|ref|ZP_08168678.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sp. HGF1] gi|292644564|gb|EFF62654.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sanguinis PC909] gi|325488594|gb|EGC91004.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sp. HGF1] Length = 162 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 17/107 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65 +M AA+ ++ L + +IVKDG +I RG T+ HAE+ A+ +A E Sbjct: 6 YMQAAIEEAKKAQNLGEV--PIGAVIVKDGEIIARGYNLRETSQLSNAHAEMIAIAKANE 63 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 T YVTLEPC P CA I++ I VV DP Sbjct: 64 MVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRIPTVVFGAHDP 104 >gi|226952955|ref|ZP_03823419.1| deaminase [Acinetobacter sp. ATCC 27244] gi|294650537|ref|ZP_06727894.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194] gi|226836276|gb|EEH68659.1| deaminase [Acinetobacter sp. ATCC 27244] gi|292823534|gb|EFF82380.1| cytosine deaminase [Acinetobacter haemolyticus ATCC 19194] Length = 174 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 61/146 (41%), Gaps = 21/146 (14%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A HAE+QAL A + + AT YVTLEPC+ Sbjct: 35 VGAVIVSQSKIIGAGYNAPILLSDPSAHAEIQALRMACQSIQNYRLPEDATLYVTLEPCT 94 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL---QWLSQKGIIVDRMMESEGK 135 C +I I+RVV +P VS R L + + K + M+++ Sbjct: 95 M------CVGALIHARIQRVVFATPEPKAGSLVSARQLLDSGYYNHKFVFEHGCMQAKCS 148 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQD 161 L + ++ ++ I L S D Sbjct: 149 AQLSDFFKQRRNQKKQIRLSKTSSND 174 >gi|254827285|ref|ZP_05231972.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL N3-165] gi|258599666|gb|EEW12991.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL N3-165] Length = 156 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ + + KR+ + Sbjct: 139 MLKSFF-QNLRKRNKLN 154 >gi|262038435|ref|ZP_06011809.1| dCMP deaminase [Leptotrichia goodfellowii F0264] gi|261747530|gb|EEY34995.1| dCMP deaminase [Leptotrichia goodfellowii F0264] Length = 161 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 36/126 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46 S+D FM A G+ S +PS AC+I +D +IG G Sbjct: 9 SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDNMPWN 63 Query: 47 -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 T Y HAE+ A+ + + + A YVT PC+ CA+ I++ GI++ Sbjct: 64 KEGDFLNTKYPYVVHAELNAILNSIKSLKNAIIYVTHFPCNE------CAKAIVQSGIKK 117 Query: 100 VVVCVD 105 V+ D Sbjct: 118 VIYFSD 123 >gi|256072191|ref|XP_002572420.1| deoxycytidylate deaminase [Schistosoma mansoni] gi|238657578|emb|CAZ28651.1| deoxycytidylate deaminase, putative [Schistosoma mansoni] Length = 175 Score = 42.4 bits (98), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/154 (25%), Positives = 63/154 (40%), Gaps = 44/154 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FMS AL + S +PS AC++ ++ ++G G Y G P Sbjct: 22 SWDEYFMSIALL-----SAMRSKDPSTQVGACIVNQEKKIVGIG---YNGMPNGILDDDV 73 Query: 54 ------------------HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIE 94 HAE+ A+ E + G T + T+ PC+ CA+ II+ Sbjct: 74 PWGKGSANELENKYLYVCHAELNAVLNRNEAHSGGCTLFTTMFPCNE------CAKVIIQ 127 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GI+ VV D + S + ++L K + R Sbjct: 128 AGIKEVVYYSDKKNGTESNQAAKYLFNKADVSIR 161 >gi|242802981|ref|XP_002484082.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500] gi|218717427|gb|EED16848.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500] Length = 148 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 18/106 (16%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P ACL+ KDG ++GRG H E+ ALE +G GAT Y TL PC Sbjct: 24 PIGACLVSKDGKILGRGHNMRFQKGSATLHGEISALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C I ++RVVV ++ + G ++L +GI V Sbjct: 84 M------CTGACILYKVKRVVVGENNNFL----GGEEYLKSRGIEV 119 >gi|282915881|ref|ZP_06323646.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139] gi|283769715|ref|ZP_06342607.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19] gi|282320177|gb|EFB50522.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus D139] gi|283459862|gb|EFC06952.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus H19] Length = 156 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 44/135 (32%), Positives = 55/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAARLGEV--PIGAVITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|260912280|ref|ZP_05918831.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472 str. F0295] gi|260633581|gb|EEX51720.1| cytidine/deoxycytidylate deaminase [Prevotella sp. oral taxon 472 str. F0295] Length = 144 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 10 LDLRY----LRMARIWAENSYCVRRKVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 62 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC C++ II+ GI+RVV Sbjct: 63 NVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKRVV 115 >gi|39995176|ref|NP_951127.1| cytidine/deoxycytidylate deaminase family protein [Geobacter sulfurreducens PCA] gi|39981938|gb|AAR33400.1| cytidine/deoxycytidylate deaminase family protein [Geobacter sulfurreducens PCA] gi|307634647|gb|ADI82903.2| tRNA (adenosine-34) deaminase [Geobacter sulfurreducens KN400] Length = 179 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+DG VIGRG G HAE+ A+ +A + GAT YVTLEPC Sbjct: 34 IGAVIVRDGAVIGRGHNLREGSNDPSAHAEMIAIRQAARRSANWRLTGATLYVTLEPCLM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C II + RVV DP +G Sbjct: 94 ------CMGAIILARLERVVFGCYDPKGGAAG 119 >gi|77407016|ref|ZP_00784028.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae H36B] gi|77174376|gb|EAO77233.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus agalactiae H36B] Length = 168 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVKDG +IGRG A HAE+ A+ A E Sbjct: 12 FMXEALKEAK--SSLEKEEIPIGCVIVKDGHIIGRGHNAREEFNKAILHAEIMAINNANE 69 Query: 66 EARG-----ATAYVTLEPC 79 + T +VT+EPC Sbjct: 70 KVGNWRLLDTTLFVTVEPC 88 >gi|113969580|ref|YP_733373.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4] gi|113884264|gb|ABI38316.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. MR-4] Length = 252 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 44/98 (44%), Gaps = 15/98 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK+G I G ++ + C HAE+Q L AG+ T YVTLEPC+ Sbjct: 111 VGAVLVKEGQQIATGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAM 170 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 CA ++ I RVV D +G L L Sbjct: 171 ------CAGAMVHSRIARVVFGAKDEKTGAAGTVLNLL 202 >gi|163814785|ref|ZP_02206174.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759] gi|158450420|gb|EDP27415.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759] Length = 181 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 17/114 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG 64 ++M AL +R + + + C+IV +G +I RG HAE+ A+E+A Sbjct: 31 KYMDKALAQARR--AYANGDVPIGCVIVHEGKIIARGFNKRNLKKTTLAHAEILAIEQAS 88 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 ++ T YVTLEPC CA I++ I +VV+ +P +G Sbjct: 89 KKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNPKAGCAG 136 >gi|302390580|ref|YP_003826401.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter oceani DSM 16646] gi|302201208|gb|ADL08778.1| CMP/dCMP deaminase zinc-binding protein [Thermosediminibacter oceani DSM 16646] Length = 152 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 13/82 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G +GAT YVT +PC+ CA+ +I GIRR+V + PD Sbjct: 81 HAEQNAIIQAAIWGTSIKGATIYVTHQPCA------LCAKMLINAGIRRIVFKGEYPD-- 132 Query: 111 VSGRGLQWLSQKGIIVDRMMES 132 L+ LS+ G+ + R ++ Sbjct: 133 --NLALELLSEAGVEICRYTQN 152 >gi|238922727|ref|YP_002936240.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium rectale ATCC 33656] gi|238874399|gb|ACR74106.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium rectale ATCC 33656] Length = 162 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M A++ ++ L + C+IV +I RG T HAE+ A+ + Sbjct: 9 DEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAIRK 66 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A ++ T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 67 ASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAG 116 >gi|261377687|ref|ZP_05982260.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685] gi|269145955|gb|EEZ72373.1| tRNA-specific adenosine deaminase [Neisseria cinerea ATCC 14685] Length = 239 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 21/104 (20%) Query: 31 VACLIVKDGIVIGRGVTAYGGC-------PHAEVQALEEAGEEAR-----GATAYVTLEP 78 V +IV DG +I +A+ C HAE+ AL +A E + G Y+TLEP Sbjct: 114 VGAVIVSDGKIIA---SAHNTCIADCNVSRHAEINALAQASSEMQNYRLDGCDIYITLEP 170 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 C+ CA +I+ I+RV+ +P +G + + K Sbjct: 171 CAM------CASALIQARIKRVIYGAVEPKTGAAGSIVNLFADK 208 >gi|317125029|ref|YP_004099141.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] gi|315589117|gb|ADU48414.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] Length = 254 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 33/194 (17%) Query: 184 HLLRAQSDAILVGIGTVLAD-------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 LLR S A++VG GT+ A+ P++ L P+ +I +S ++ Sbjct: 66 ELLRGLSHAVIVGAGTIRAEGYTGLTVSPDVLPLRRDLGIDEPLPLI-----AVSRSGRL 120 Query: 237 IKTALLA---PVIIVTENDDPVLALA---FRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++A A P ++ T P LA A ++++ + D DL L+ L RG T L Sbjct: 121 PESAQGAAGGPALLATCARAPGLAEAQSILGREHVLVCGEDEVDLPLLVARLHERGWTRL 180 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE------GGIPSPLE---------EGYLE 335 L EGG + SF+ RLVD + + V+G G SPLE +G L Sbjct: 181 LCEGGPHLTGSFLAVRLVDELCFTIAPRVVGGMHPRPVGPAASPLELELGSLVEADGTLM 240 Query: 336 KNFMCVRRDYFGSD 349 + RR D Sbjct: 241 GRWFTPRRPSGSGD 254 >gi|307354384|ref|YP_003895435.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius DSM 11571] gi|307157617|gb|ADN36997.1| CMP/dCMP deaminase zinc-binding protein [Methanoplanus petrolearius DSM 11571] Length = 148 Score = 42.4 bits (98), Expect = 0.11, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 14/100 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 RFM+AA+ ++ G + ++V+DG +IG G + HAE+ L AG Sbjct: 7 RFMTAAIIEAK--TGHDEGGIPIGAVLVRDGKIIGSGHNRRIQENDPIIHAEIDCLRNAG 64 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + T Y TL PC CA +++ GIRRVVV Sbjct: 65 RIGSYKDTTLYSTLMPCYL------CAGAVVQFGIRRVVV 98 >gi|288924860|ref|ZP_06418797.1| cytidine/deoxycytidylate deaminase family protein [Prevotella buccae D17] gi|315607887|ref|ZP_07882880.1| competence protein ComEB [Prevotella buccae ATCC 33574] gi|288338647|gb|EFC76996.1| cytidine/deoxycytidylate deaminase family protein [Prevotella buccae D17] gi|315250356|gb|EFU30352.1| competence protein ComEB [Prevotella buccae ATCC 33574] Length = 148 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 45/113 (39%), Gaps = 35/113 (30%) Query: 15 LRFSR----WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------------- 53 LR+ R W V L+VKD ++I G Y G P Sbjct: 13 LRYLRMACIWSENSYCERRKVGALVVKDKMIISDG---YNGTPSGFENVCEDENHITKPY 69 Query: 54 --HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC CA+ II+ GI+RVV Sbjct: 70 VLHAEANAITKLARSSNNSDGSTLYVTASPCIE------CAKLIIQAGIKRVV 116 >gi|290891900|ref|ZP_06554897.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J2-071] gi|290558494|gb|EFD92011.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J2-071] Length = 156 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ + + KR+ + Sbjct: 139 MLKSFF-QNLRKRNKLN 154 >gi|332289514|ref|YP_004420366.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179] gi|330432410|gb|AEC17469.1| tRNA-specific adenosine deaminase [Gallibacterium anatis UMN179] Length = 153 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 29/87 (33%), Positives = 42/87 (48%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPC 79 P A L+ + G ++ G +T HAE+ AL +AG++ + T YVTLEPC Sbjct: 18 PVGAVLVDEQGNIVAEGWNQSITLSDPTAHAEIMALRQAGQKLQNYRLLNLTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 P CA I+ I+R+V D Sbjct: 78 ------PMCAGAILHSRIKRLVFGASD 98 >gi|224541628|ref|ZP_03682167.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM 15897] gi|224525466|gb|EEF94571.1| hypothetical protein CATMIT_00799 [Catenibacterium mitsuokai DSM 15897] Length = 147 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 17/105 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR----GVTAYGGCPHAEVQALEE 62 D +M+ AL+ + + ++ + C+IV +G +I R T HAE+ A+ + Sbjct: 3 DEEYMAEALKEAE--IAMSEDEVPIGCIIVYEGQIIARTHNQKETLKKATGHAEILAINQ 60 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 A E G T YVTLEPC C II+ + R+V+ Sbjct: 61 ASEYLDLWHLDGCTMYVTLEPCMM------CTGAIIQSRMSRLVI 99 >gi|253702219|ref|YP_003023408.1| CMP/dCMP deaminase zinc-binding [Geobacter sp. M21] gi|251777069|gb|ACT19650.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M21] Length = 166 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++VKDG+VI RG + HAE+ A+ +A ++ GAT YVTLEPC+ Sbjct: 27 IGAVVVKDGVVIARGHNLRESKQDPAAHAEMIAIRKAAKKLASWRLTGATLYVTLEPCTM 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C +I + RVV DP +G Sbjct: 87 ------CMGAVILSRLERVVFGSYDPKGGAAG 112 >gi|28209851|ref|NP_780795.1| cytosine deaminase [Clostridium tetani E88] gi|28202286|gb|AAO34732.1| cytosine deaminase [Clostridium tetani E88] Length = 146 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 21/146 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA-- 63 FM A+ +R + + + +IVK+ +IGRG + HAE+ A+ EA Sbjct: 5 FMKEAVLEARKALNINEV--PIGAVIVKENKIIGRGHNLVEKSKNPLAHAEIIAIREACK 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G YVTLEPC P CA II + +V + DP+ G + Sbjct: 63 SINNWRLNGCHMYVTLEPC------PMCAGAIIRSRMDKVYIGTFDPNSGACGTIINLTQ 116 Query: 121 QK----GIIVDRMMESEGKIFLHAYL 142 K I ++ + + E L + Sbjct: 117 NKYLNTNININWLYDEESSTLLKKFF 142 >gi|114046813|ref|YP_737363.1| tRNA-adenosine deaminase [Shewanella sp. MR-7] gi|113888255|gb|ABI42306.1| tRNA-adenosine deaminase [Shewanella sp. MR-7] Length = 222 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 44/99 (44%), Gaps = 15/99 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK+G I G ++ + C HAE+Q L AG+ T YVTLEPC+ Sbjct: 81 VGAVLVKEGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCA- 139 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 CA ++ I RVV D +G L L Sbjct: 140 -----MCAGAMVHSRIARVVFGAKDEKTGAAGTVLNLLQ 173 >gi|260886684|ref|ZP_05897947.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC 35185] gi|330839487|ref|YP_004414067.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC 35185] gi|260863536|gb|EEX78036.1| tRNA-specific adenosine deaminase [Selenomonas sputigena ATCC 35185] gi|329747251|gb|AEC00608.1| CMP/dCMP deaminase zinc-binding protein [Selenomonas sputigena ATCC 35185] Length = 168 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 16/109 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL+ ++ P A L+ DG V+ R T + G HAE+ AL+E Sbjct: 4 DIAFMKEALKEAQ-EAFQAGEVPIGAVLVDADGTVVARAHNMRETWHDGTAHAEIIALQE 62 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A + G T YVT+EPC P CA ++ + RVV D Sbjct: 63 AARKLGRWRLSGLTLYVTIEPC------PMCAGALVMSRVDRVVYGATD 105 >gi|229159196|ref|ZP_04287222.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803] gi|228624277|gb|EEK81077.1| hypothetical protein bcere0009_110 [Bacillus cereus R309803] Length = 166 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/146 (29%), Positives = 64/146 (43%), Gaps = 21/146 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISSAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L + +KR I K+ S +N Sbjct: 142 LLTNFFRELRKKRKEIK-KLEKSNEN 166 >gi|90410888|ref|ZP_01218902.1| Putative cytosine/adenosine deaminase [Photobacterium profundum 3TCK] gi|90328101|gb|EAS44412.1| Putative cytosine/adenosine deaminase [Photobacterium profundum 3TCK] Length = 175 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 31/148 (20%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V +G V+G G + + HAE+ AL +AG+ + AT YVTLEPC Sbjct: 36 VGAVVVYEGRVVGEGWNRSIGQHDATAHAEMMALRQAGKVIQNYRLLDATLYVTLEPC-- 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS----------QKGIIVDRMME 131 P CA ++ I +V+ D +G + LS Q G++ + Sbjct: 94 ----PMCAGAMVHSRIGKVIFGASDLKTGAAGSVMNLLSYDEVNHHVDCQAGVL-----D 144 Query: 132 SEGKIFLHAYLT-RQVEKRSHITLKIAV 158 E + L A+ R+ EK++ + A Sbjct: 145 EECRAQLQAFFKRRRAEKKAEKKARQAA 172 >gi|315633684|ref|ZP_07888974.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC 33393] gi|315477726|gb|EFU68468.1| tRNA-specific adenosine deaminase [Aggregatibacter segnis ATCC 33393] Length = 175 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 50/112 (44%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 D +FM AL + L P A L+ ++G +IG G + HAE+ A Sbjct: 6 QQLDEQFMRHALMLADKAEALGEI-PVGAVLVSEEGEIIGEGWNLSIIDSDPTAHAEIVA 64 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + G+ + AT YVTLEPC+ CA I+ I+R+V D Sbjct: 65 LRQGGQRLQNYRLLNATLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110 >gi|58177055|pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate Deaminase, Mutant R115e Length = 193 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ E G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150 >gi|315125849|ref|YP_004067852.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913] gi|315014363|gb|ADT67701.1| tRNA-specific adenosine deaminase [Pseudoalteromonas sp. SM9913] Length = 168 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALEE 62 D +M AL +++ L V +IVKD +I R +T HAE+ A+ E Sbjct: 7 DQYWMEQALVYAKQAEQLDEI--PVGAIIVKDNQLISAGYNRSITDNDPSAHAEMIAVRE 64 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ T YVTLEPCS CA ++ I+R+V D +G + Sbjct: 65 AGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGSAGSIMN 118 Query: 118 WLSQ 121 L + Sbjct: 119 LLQE 122 >gi|313901432|ref|ZP_07834892.1| bifunctional deaminase-reductase domain protein [Thermaerobacter subterraneus DSM 13965] gi|313468303|gb|EFR63757.1| bifunctional deaminase-reductase domain protein [Thermaerobacter subterraneus DSM 13965] Length = 252 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 43/177 (24%), Positives = 82/177 (46%), Gaps = 16/177 (9%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADD-- 204 R ++ + + + D + M G G+V PI + + LRA DA+L G GTV A D Sbjct: 30 RPYVLVNMVSTVDGKVTM-GRGAVQEPIGSKVDHGLMARLRAPVDAVLRGAGTVRAYDVP 88 Query: 205 PELTC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 P + + GL P+ +++ L LD++ + A P +++T P + Sbjct: 89 PRVPAEYAERRQARGLPPQ-PLPVVITGSCDLPLDARFFREAPRRP-LVLTRRAAPADKV 146 Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSII 312 ++ ++ + + +++ L +L R G+ LL EGG V + + + +VD + Sbjct: 147 EAVRQVADVAFAGEEQVEMRAALALLRERYGIQRLLSEGGPTVNFAMLEAGVVDELF 203 >gi|34541467|ref|NP_905946.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas gingivalis W83] gi|188995653|ref|YP_001929905.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC 33277] gi|34397784|gb|AAQ66845.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas gingivalis W83] gi|188595333|dbj|BAG34308.1| putative deoxycytidylate deaminase [Porphyromonas gingivalis ATCC 33277] Length = 151 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 42/145 (28%), Positives = 58/145 (40%), Gaps = 40/145 (27%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V LIVK+ ++I G Y G P Sbjct: 15 LDKRY----LRMARIWAENSYCERRKVGALIVKEQMIISDG---YNGTPAGFENICEDEN 67 Query: 54 --------HAEVQALEEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE A+ + + GAT Y+T PC CA+ II+ I+RVV Sbjct: 68 NVTKPYVLHAEANAITKVAGSTNNSSGATIYITAAPCIE------CAKLIIQSKIKRVVY 121 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVD 127 R+ G + L + GI+VD Sbjct: 122 ---SEKYRLD-EGCRLLERAGIVVD 142 >gi|331265454|ref|YP_004325084.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus oralis Uo5] gi|326682126|emb|CBY99742.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus oralis Uo5] Length = 155 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM AL+ + + L + C+IVKDG +IGRG A HAE+ A+E A Sbjct: 11 FMREALKEA--EIALEHDEIPIGCVIVKDGEIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|325846128|ref|ZP_08169222.1| cytidine and deoxycytidylate deaminase zinc-binding region [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481721|gb|EGC84756.1| cytidine and deoxycytidylate deaminase zinc-binding region [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 185 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + C+IVK+G +I R Y G HAE+ A+++A + T YVT+EPCS Sbjct: 25 IGCVIVKNGKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCSM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 CA II I R+V+ + D Sbjct: 85 ------CAGAIINSRIDRLVIALAD 103 >gi|288928373|ref|ZP_06422220.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331207|gb|EFC69791.1| cytidine/deoxycytidylate deaminase family protein [Prevotella sp. oral taxon 317 str. F0108] Length = 146 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 48/119 (40%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 10 LDLRY----LRMARIWAENSYCVRRKVGALVVKDKMIISDG---YNGTPSGFENVCEDDN 62 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC C++ II+ GI+RVV Sbjct: 63 NVTKPYVLHAEANAITKLARSSNNSDGSTLYVTAAPCIE------CSKLIIQSGIKRVV 115 >gi|15601943|ref|NP_245015.1| hypothetical protein PM0078 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720287|gb|AAK02162.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 166 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D ++M ALR + L P A L+ + G ++G G ++ HAE+ A Sbjct: 3 SDMDEKWMRHALRLADKAEQLGEI-PVGAVLVDEQGNLLGEGWNLSISESDPTAHAEIVA 61 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + G+ + T YVTLEPC+ CA I+ I+R+V D Sbjct: 62 LRQGGQRLQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 107 >gi|291165661|gb|EFE27710.1| cytidine/deoxycytidylate deaminase family protein [Filifactor alocis ATCC 35896] Length = 150 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 +M A R + + V +IVKD ++IGRG T HAE+ A+++A + Sbjct: 4 YMEEAFREALY--SYQKEEVPVGAVIVKDDVIIGRGHNVIETHQSSVCHAEMIAIQQAQK 61 Query: 66 EAR-----GATAYVTLEPC 79 R GA YVTLEPC Sbjct: 62 HLRNWRLNGAKMYVTLEPC 80 >gi|51891218|ref|YP_073909.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863] gi|51854907|dbj|BAD39065.1| dCMP deaminase [Symbiobacterium thermophilum IAM 14863] Length = 144 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 41/157 (26%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53 M S+D FM A ++ T V ++V+D ++ T Y G P Sbjct: 1 MARPSWDEYFMELAQVVAKRS---TCNRRKVGTVLVRDKRIL---TTGYNGSPSGLPHCT 54 Query: 54 ---------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE A+ +A G +GAT YVT PC H CA+ +I Sbjct: 55 DVGCLVVDGHCVRAIHAEQNAIIQAALHGITLKGATCYVTSSPCVH------CAKMLIAA 108 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 GI R+V +D+ ++ GL+ Q G++++R S Sbjct: 109 GIERIVY-MDEYTEQI---GLEMARQAGVVMERFTPS 141 >gi|50085441|ref|YP_046951.1| putative deaminase [Acinetobacter sp. ADP1] gi|49531417|emb|CAG69129.1| putative deaminase [Acinetobacter sp. ADP1] Length = 174 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 39/147 (26%), Positives = 64/147 (43%), Gaps = 21/147 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV VIG G +T HAE++A+ A E + AT YVTLEPC+ Sbjct: 31 VGAVIVSQNKVIGSGYNAPITLNDPTAHAEIRAIRMACESVKNYRLPEDATLYVTLEPCT 90 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL---QWLSQKGIIVDRMMESEGK 135 C ++ I RVV +P VS R L + + K +I M+++ Sbjct: 91 M------CVGALVHARIHRVVFATTEPKAGSLVSARQLLNMGYYNHKFLIEHGCMQAQCS 144 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDN 162 L + ++ E++ + + + +N Sbjct: 145 KQLSDFFRKRREQKRELRQQYIATSEN 171 >gi|295394785|ref|ZP_06805000.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] gi|294972381|gb|EFG48241.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] Length = 258 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 11/156 (7%) Query: 185 LLRAQSDAILVGIGTVLAD-----DPE---LTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++R+ +DA++VG TV ++ P+ L R Q P+ +I+ L D Sbjct: 77 VVRSLADAVVVGAQTVRSERLTRMSPKPAHLNQRHARGQTDVPIMVIVTSSGDLPWDR-- 134 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I +PV + T DP + LA +++ + + + + LV RG+ L+ EGG Sbjct: 135 INERGTSPVWVATNTSDPQV-LAELRRHADEVLTGIESPQAVKDALVARGLRRLVCEGGP 193 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 V ++++ L+D + L S + G G P EG Sbjct: 194 NVLAQWMDAGLIDEMCLTVSPKLHGTPGAPRLFGEG 229 >gi|268552503|ref|XP_002634234.1| Hypothetical protein CBG01804 [Caenorhabditis briggsae] gi|187037916|emb|CAP22833.1| hypothetical protein CBG_01804 [Caenorhabditis briggsae AF16] Length = 426 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 44/147 (29%), Positives = 68/147 (46%), Gaps = 27/147 (18%) Query: 31 VACLIVKDGIVIGRGVTAYG--GCP--HAEVQALEE----AGEEA----RGATAYVTLEP 78 V C+ V DG IGRG G P HAE+ A+ E GEE+ + + YV+LEP Sbjct: 31 VGCVFVVDGEEIGRGRNRVNETGDPTRHAEMVAVTEIWSKYGEESNNLLKKSVLYVSLEP 90 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPD---VRVSGRGLQWLSQKGIIVDRMMESEGK 135 C C+ + + GIR++V ++P VR G ++ + I + + +E Sbjct: 91 CIM------CSSAMYQLGIRKMVYGAENPRFGGVRSVGSAEKYREENNIEIVAGVWAERS 144 Query: 136 I-FLHAYLTRQ-----VEKRSHITLKI 156 + L A+ +Q EKR T K+ Sbjct: 145 VGMLKAFYEKQNPFAPPEKRKTKTPKL 171 >gi|158316923|ref|YP_001509431.1| hypothetical protein Franean1_5167 [Frankia sp. EAN1pec] gi|158112328|gb|ABW14525.1| bifunctional deaminase-reductase domain protein [Frankia sp. EAN1pec] Length = 270 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 15/193 (7%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 L V H+ S D I + G S + G LR SD +LVG GT Sbjct: 48 LPEPVPGVPHVRSNFVTSADGAIEINGR-SADLGGPADLRVFRTLRWLSDVVLVGAGTAR 106 Query: 202 ADD--PELT-------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 +D P L GL P+ ++ +L D+++ TA + P+++ E Sbjct: 107 TEDYGPVLVPAERRERRAAAGLTPVPPVAVVSG-RLELDPDARLF-TAAVRPLLLTCEAA 164 Query: 253 DPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 P+ A + I+ C + + + L L RG+ +L EGG + F + L+D Sbjct: 165 PPLRRRAL-EPVAEIVVCGDETVEPRAALDALAERGLLRVLTEGGPRLHAQFAQAGLLDE 223 Query: 311 IILYRSQIVIGEG 323 + L + ++ G G Sbjct: 224 LCLTLAPVLAGPG 236 >gi|47092339|ref|ZP_00230130.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 4b H7858] gi|226225270|ref|YP_002759377.1| hypothetical protein Lm4b_02693 [Listeria monocytogenes Clip81459] gi|254824916|ref|ZP_05229917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J1-194] gi|255520888|ref|ZP_05388125.1| hypothetical protein LmonocFSL_06656 [Listeria monocytogenes FSL J1-175] gi|47019318|gb|EAL10060.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 4b H7858] gi|225877732|emb|CAS06447.1| Conserved hypothetical proteins [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594156|gb|EFG01917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J1-194] gi|328468199|gb|EGF39205.1| hypothetical protein LM1816_02662 [Listeria monocytogenes 1816] Length = 156 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ + + KR+ + Sbjct: 139 MLRSFF-QDLRKRNKLN 154 >gi|169599362|ref|XP_001793104.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15] gi|111069591|gb|EAT90711.1| hypothetical protein SNOG_02499 [Phaeosphaeria nodorum SN15] Length = 265 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 21/107 (19%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 ++ RFM A+ + + L S V C+ VKDG +IGRG+ G HAE A+ Sbjct: 68 AYHERFMREAIAMA--ELALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 125 Query: 61 EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRV 100 AG ++ YVT+EPC CA + + GIR V Sbjct: 126 --AGILSKSPVKILNETDLYVTVEPCVM------CASMLRQYGIRAV 164 >gi|293401503|ref|ZP_06645646.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305141|gb|EFE46387.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 161 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 G T Y HAE+ A+ + + RG + YV+L PC+ CA+ II+ GI R+V Sbjct: 68 GATKYPYVVHAELNAILNSKNDLRGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121 Query: 105 D---DPDVRVSGRGL 116 D D D ++ + + Sbjct: 122 DKYADTDATIASKRM 136 >gi|307249782|ref|ZP_07531760.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858197|gb|EFM90275.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 196 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + + P A L+ ++G +IG G + HAE Sbjct: 34 LTISEQDIHFMQYALELAD-RAEVIGEIPVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ R T YVTLEPC+ CA I+ +RR+V D Sbjct: 93 MLAIRQAGKVQRNYRLLDCTLYVTLEPCTM------CAGAILHSRLRRLVFGASD 141 >gi|332308193|ref|YP_004436044.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175522|gb|AEE24776.1| CMP/dCMP deaminase zinc-binding protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 145 Score = 42.0 bits (97), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 16/102 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAG 64 +FM AA+ ++ GL + ++V +IGRG G P H E+ ALE AG Sbjct: 3 KFMQAAIDEAKQ--GLAEGGIPIGSVLVYQDEIIGRGHNRRVQSGSPILHGEMDALENAG 60 Query: 65 EEA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + +T Y TL PCS C+ I+ GI +VV+ Sbjct: 61 RQPASVYKASTLYTTLSPCSM------CSGTILLYGIPKVVI 96 >gi|209966407|ref|YP_002299322.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Rhodospirillum centenum SW] gi|209959873|gb|ACJ00510.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Rhodospirillum centenum SW] Length = 226 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 18/166 (10%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + + +A+S D I AG + ++G +V RA +DA+LVG GT+ DDP LT R+ Sbjct: 4 VQVSVAMSLDGCIDRAGGERLVLSGAEDLREVQAARAAADAVLVGAGTLRRDDPRLTVRV 63 Query: 212 NGLQE--------HSPMRIILDPHFKLSLDSKII----KTALLAPVIIVTENDDPVLALA 259 L++ P R+ L + D+ + +L P + + A+A Sbjct: 64 PELRQGRLDRGLPADPARVALTRSGTIDPDAAFFAGDGRRFVLCPTAVAPGLRRRLGAVA 123 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ + D ++ L G G+ LLVEGG V F+ S Sbjct: 124 ------TVLPLERTDAPSIVAALEGVGIDRLLVEGGTQVLTLFLAS 163 >gi|46908898|ref|YP_015287.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|254851976|ref|ZP_05241324.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL R2-503] gi|254931009|ref|ZP_05264368.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262] gi|254994111|ref|ZP_05276301.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL J2-064] gi|300763522|ref|ZP_07073520.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL N1-017] gi|46882171|gb|AAT05464.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|258605274|gb|EEW17882.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL R2-503] gi|293582555|gb|EFF94587.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262] gi|300515799|gb|EFK42848.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL N1-017] gi|328469576|gb|EGF40517.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes 220] gi|332313149|gb|EGJ26244.1| tRNA-specific adenosine deaminase [Listeria monocytogenes str. Scott A] Length = 156 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ + + KR+ + Sbjct: 139 MLKSFF-QDLRKRNKLN 154 >gi|307706899|ref|ZP_07643700.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321] gi|307617691|gb|EFN96857.1| tRNA-specific adenosine deaminase [Streptococcus mitis SK321] Length = 155 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVK+G +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKEGEIIGRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|212634313|ref|YP_002310838.1| cytidine/deoxycytidylate deaminase [Shewanella piezotolerans WP3] gi|212555797|gb|ACJ28251.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Shewanella piezotolerans WP3] Length = 186 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D+RFM A+ + V ++VKDG V+ G G HAE+Q + + Sbjct: 20 DSRFMKMAMEMAAK--AEEKGEVPVGAVLVKDGEVVSAGFNYSIGLHDPSAHAEMQCIRQ 77 Query: 63 AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AG E R T YVTLEPC+ CA I+ I R+V +D +G Sbjct: 78 AGQLLENYRLLDTTLYVTLEPCAM------CAGAIVHSRISRLVYGANDEKTGAAG 127 >gi|294101414|ref|YP_003553272.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] gi|293616394|gb|ADE56548.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] Length = 168 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 54/121 (44%), Gaps = 17/121 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87 V CL K GI G G HAE+ A+ +A G GA Y T EPCS Sbjct: 58 VGCLRDKLGIPSGERHEICRG-SHAEINAIAQAAAVGTRTEGAVLYCTHEPCSF------ 110 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME---SEGKIFLHAYLTR 144 C + II GIRR+V PD S + SQ + V ++ E E + L A+L + Sbjct: 111 CTKAIINAGIRRIVFVYPYPDALAS----EMRSQASLEVCQLSEKVFQEMDLALKAFLQQ 166 Query: 145 Q 145 + Sbjct: 167 R 167 >gi|291526516|emb|CBK92103.1| Cytosine/adenosine deaminases [Eubacterium rectale DSM 17629] gi|291527005|emb|CBK92591.1| Cytosine/adenosine deaminases [Eubacterium rectale M104/1] Length = 157 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D ++M A++ ++ L + C+IV +I RG T HAE+ A+ + Sbjct: 4 DEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAIRK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A ++ T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 62 ASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAG 111 >gi|303234521|ref|ZP_07321158.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna BVS033A4] gi|302494355|gb|EFL54124.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna BVS033A4] Length = 155 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 21/158 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +FM A+ +R L V C+IVK+G +I + T HAE++A+ + Sbjct: 5 DEKFMIKAIEQARIAFDLDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC C ++ I +VV D G L Sbjct: 63 ATQVIGNFRLDNCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLLS 116 Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151 +G I V +ME E + ++ R EK + Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154 >gi|291295391|ref|YP_003506789.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] gi|290470350|gb|ADD27769.1| tRNA(Ile)-lysidine synthetase [Meiothermus ruber DSM 1279] Length = 521 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 51/112 (45%), Gaps = 17/112 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQA 59 S D M +AL +R + + + ++V DG V+ HAE+ A Sbjct: 377 ESEDLEHMRSALEQAR--LAQQAGEVPIGAVVVWDGEVLAEAHNQVEQQCDATAHAELLA 434 Query: 60 LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L++A + GAT YVTLEPC P C ++E +RRVV V++ Sbjct: 435 LQQALHKRHSKVLPGATVYVTLEPC------PMCFGALMEAQVRRVVYAVEN 480 >gi|159794935|pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine Deaminase From Streptococcus Pyogenes Length = 179 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ S L + C+IVKDG +IGRG A HA Sbjct: 9 MPYSLEEQTYFMQEALKESE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95 >gi|260437836|ref|ZP_05791652.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876] gi|292809861|gb|EFF69066.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876] Length = 157 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 27/157 (17%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65 FM A+R ++ L + C+IV DG +I RG T HAE+ A++ A + Sbjct: 7 FMKEAIRQAKKAEKLNEV--PIGCVIVYDGKIIARGYNRRNTDKSTLAHAEIIAIKRASK 64 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 T YVTLEPC CA I++ I +VV+ + +G + L Sbjct: 65 VIKDWRLEDCTLYVTLEPCQM------CAGAIVQARIPKVVIGTMNSKAGCAGSVINVLQ 118 Query: 121 Q----------KGIIVDRMMESEGKIFLHAYLTRQVE 147 KG++ D E F + +++E Sbjct: 119 MKEFNHQVDICKGVLADECKEMMQNFFRNLREKKKME 155 >gi|219682367|ref|YP_002468751.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622100|gb|ACL30256.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086188|gb|ADP66270.1| riboflavin reductase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086764|gb|ADP66845.1| riboflavin reductase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087352|gb|ADP67432.1| riboflavin reductase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087852|gb|ADP67931.1| riboflavin reductase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 214 Score = 42.0 bits (97), Expect = 0.14, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 39/213 (18%) Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS------- 218 M S IT ++ V RA+S IL T+L+D+P L R L + + Sbjct: 1 MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60 Query: 219 ----PMRIILDPHFKLSLDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINI 267 P+R+I+D ++ IIKT L + I +N ++ KK INI Sbjct: 61 IFQHPIRVIIDSKNRVQPSHNIIKTKGKIWLIRLKSDRKIWPKNTTQIIEKDHNKK-INI 119 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P Sbjct: 120 F--------SLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKP- 170 Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +C+ + L++ KN+C Sbjct: 171 -----------LCMIYEKLKISNSLQFKFKNIC 192 >gi|300853298|ref|YP_003778282.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM 13528] gi|300433413|gb|ADK13180.1| tRNA-specific adenosine deaminase [Clostridium ljungdahlii DSM 13528] Length = 145 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 27/118 (22%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQAL 60 FM A+R ++ GL V +IVKD +I VTA HAE+ A+ Sbjct: 4 FMLEAIRQAK--KGLKLGEVPVGAVIVKDNEIISSCHNLKETVGIVTA-----HAEMLAI 56 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + A E G + YVTLEPC P CA I++C I ++ + DP + G Sbjct: 57 QNASEILSNWRLTGCSMYVTLEPC------PMCAGAILQCRINKLYIGTFDPTMGACG 108 >gi|217966083|ref|YP_002351761.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23] gi|217335353|gb|ACK41147.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23] gi|307572307|emb|CAR85486.1| tRNA-specific adenosine deaminase, putative [Listeria monocytogenes L99] Length = 156 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 59/137 (43%), Gaps = 21/137 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ I+ I +V DP +G + L + +ME E Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSE 138 Query: 137 FLHAYLTRQVEKRSHIT 153 L ++ + + KR+ + Sbjct: 139 MLKSFF-QDLRKRNKLN 154 >gi|114320177|ref|YP_741860.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1] gi|114226571|gb|ABI56370.1| tRNA-adenosine deaminase [Alkalilimnicola ehrlichii MLHE-1] Length = 164 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 15/115 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIG--RGVTAYGGCPHAEVQALEEA 63 D R+M AL + P A L++ D + +G + +TA HAEV AL A Sbjct: 15 DIRWMRRALALAD-QAEAAGEVPVGAVLVLDDREVAVGSNQPITARDPTAHAEVVALRRA 73 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 GE G T YVTLEPC+ C II ++RVV DP G Sbjct: 74 GEVLGAYRLSGTTLYVTLEPCTM------CIGAIIHARVKRVVFAASDPKTGACG 122 >gi|283481246|emb|CAZ69362.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 99B1] Length = 173 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 47 TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y H+E A+ A G G T YVTL PC+ C + II+ GI +V D Sbjct: 85 TKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSGICEIVYLDD 138 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132 D+ L+ L G+ + + ++ Sbjct: 139 YNDITTKTASLRMLQSAGVTIRKYKQT 165 >gi|159038151|ref|YP_001537404.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205] gi|157916986|gb|ABV98413.1| CMP/dCMP deaminase zinc-binding [Salinispora arenicola CNS-205] Length = 162 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 69 GATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y ++EPC S R C + I+ GIRRVV + +P + G + L GI V Sbjct: 76 GATLYSSMEPCTSRKSRPRTCTELILAAGIRRVVYALREPPLLAECHGTEVLRSSGIDV 134 >gi|160894462|ref|ZP_02075238.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50] gi|156863773|gb|EDO57204.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50] Length = 214 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 17/102 (16%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65 +M A++ + + + C+IVKD VI RG HAE+ A+E+A + Sbjct: 62 YMKKAIKLA--QKAYVQGDVPIGCVIVKDNKVIARGYNKRNLKKTTLAHAELLAIEQASK 119 Query: 66 E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + T YVTLEPC CA I++ I +VV+ Sbjct: 120 KLGDWRLEDCTMYVTLEPCQM------CAGAIVQARIPKVVI 155 >gi|73852493|ref|YP_293777.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86] gi|72415209|emb|CAI65446.1| putative deoxycytidylate deaminase [Emiliania huxleyi virus 86] Length = 173 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%) Query: 47 TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y H+E A+ A G G T YVTL PC+ C + II+ GI +V D Sbjct: 85 TKYPFVVHSEANAILNANGTSVNGCTMYVTLFPCNE------CTKLIIQSGICEIVYLDD 138 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRMMES 132 D+ L+ L G+ + + ++ Sbjct: 139 YNDITTKTASLRMLQSAGVTIRKYKQT 165 >gi|251791894|ref|YP_003006614.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus NJ8700] gi|247533281|gb|ACS96527.1| tRNA-specific adenosine deaminase [Aggregatibacter aphrophilus NJ8700] Length = 174 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 16/110 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 D +FM AL + L P A L+ +G +IG G + HAE+ AL Sbjct: 8 LDEKFMRHALMLADKAEALGEI-PVGAVLVSAEGEIIGEGWNLSIIDSDPTAHAEIVALR 66 Query: 62 EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + G+ + AT YVTLEPC+ CA I+ I+R+V D Sbjct: 67 QGGQRLQNYRLLNATLYVTLEPCTM------CAGAILHSRIKRLVFGAAD 110 >gi|212710654|ref|ZP_03318782.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM 30120] gi|212686735|gb|EEB46263.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM 30120] Length = 170 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 55/133 (41%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M S D +M AL ++ + V L+VKD ++ G + + HAE Sbjct: 1 MTQSEIDEYWMLQALELAK--KAQNAGEIPVGALLVKDNQLVATGWNHSIENHDPTAHAE 58 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + L++AG + T YVTLEPC CA +I I RVV D Sbjct: 59 IVTLKQAGTALQNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRVVYGAKDFKTGA 112 Query: 112 SGRGLQWLSQKGI 124 G + +SQ G+ Sbjct: 113 CGSFINIMSQPGL 125 >gi|138893694|ref|YP_001124147.1| cytosine deaminase [Geobacillus thermodenitrificans NG80-2] gi|134265207|gb|ABO65402.1| Cytosine deaminase [Geobacillus thermodenitrificans NG80-2] Length = 161 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+DG VI R T HAE+ A+ EA + AT YVTLEPC+ Sbjct: 27 IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIAEACQATGSWRLERATLYVTLEPCAM 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA I+ I RVV DP +G + L + + + ++ SE Sbjct: 87 ------CAGAIVLSRIERVVFGASDPKGGCAGTLMNLLQESRFNHQADVTSGVLASECGS 140 Query: 137 FLHAYLTRQVEKRSHI 152 L + R E++ ++ Sbjct: 141 LLSDFFRRLRERKKNV 156 >gi|315652559|ref|ZP_07905540.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986] gi|315485188|gb|EFU75589.1| cytidine/deoxycytidylate deaminase [Eubacterium saburreum DSM 3986] Length = 157 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D F+ A++ ++ L+ + + C+IV + +I RG HAE+ A+++ Sbjct: 4 DDYFLKEAVKQAK--KALSIGDVPIGCVIVFEDKIIARGYNRRNKDKSTLSHAEIIAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T Y+TLEPC P CA I++ I+R V+ +P +G L Sbjct: 62 ACKKMGDWRLEDCTMYITLEPC------PMCAGAIVQSRIKRAVLGAMNPKAGCAGSVLN 115 Query: 118 WLSQKGI 124 L G Sbjct: 116 ILQTDGF 122 >gi|229074082|ref|ZP_04207131.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18] gi|229094742|ref|ZP_04225750.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29] gi|229100808|ref|ZP_04231626.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28] gi|228682615|gb|EEL36674.1| hypothetical protein bcere0019_200 [Bacillus cereus Rock3-28] gi|228688680|gb|EEL42550.1| hypothetical protein bcere0020_110 [Bacillus cereus Rock3-29] gi|228709045|gb|EEL61169.1| hypothetical protein bcere0024_110 [Bacillus cereus Rock4-18] Length = 166 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEEIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S +N Sbjct: 118 LLTDERFNHQCEVVTGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166 >gi|197119924|ref|YP_002140351.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem] gi|197089284|gb|ACH40555.1| tRNA (adenosine-34) deaminase [Geobacter bemidjiensis Bem] Length = 166 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IVKDG++I RG + HAE+ A+ +A ++ GAT YVTLEPC+ Sbjct: 27 IGAVIVKDGVIIARGHNLRESNQDPAAHAEMIAIRKAAKKLASWRLTGATLYVTLEPCTM 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C +I + RVV DP +G Sbjct: 87 ------CMGAVILSRLDRVVFGSYDPKGGAAG 112 >gi|15617060|ref|NP_240273.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681812|ref|YP_002468198.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471514|ref|ZP_05635513.1| riboflavin reductase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|20139386|sp|P57534|RIBD2_BUCAI RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|25403629|pir||G84983 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [imported] - Buchnera sp. (strain APS) gi|10039125|dbj|BAB13159.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624655|gb|ACL30810.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 207 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 88/213 (41%), Gaps = 39/213 (18%) Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS------- 218 M S IT ++ V RA+S IL T+L+D+P L R L + + Sbjct: 1 MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60 Query: 219 ----PMRIILDPHFKLSLDSKIIKTA-------LLAPVIIVTENDDPVLALAFRKKNINI 267 P+R+I+D ++ IIKT L + I +N ++ KK INI Sbjct: 61 IFQHPIRVIIDSKNRVQPSHNIIKTKGKIWLIRLKSDRKIWPKNTTQIIEKDHNKK-INI 119 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P Sbjct: 120 F--------SLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKP- 170 Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +C+ + L++ KN+C Sbjct: 171 -----------LCMIYEKLKISNSLQFKFKNIC 192 >gi|37527198|ref|NP_930542.1| tRNA-specific adenosine deaminase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786632|emb|CAE15694.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 173 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 60/145 (41%), Gaps = 22/145 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D +I G + A+ HAE+ L + GE R T YVTLEPC+ Sbjct: 29 VGAILVADNKIISEGWNQSIIAHDPTAHAEIIVLRKGGERLRNYRLINTTLYVTLEPCT- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA +I I+R+V D G + L G+ I ++ E Sbjct: 88 -----MCAGAMIHSRIQRLVYGASDMKTGAVGSLVDILRHPGMNHQIDITSGVLAEECST 142 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQD 161 L A+ ++ ++ H LK A Q Sbjct: 143 MLSAFFKQR--RQQHKALKAARKQQ 165 >gi|294140156|ref|YP_003556134.1| cytidine/deoxycytidylate deaminase family protein [Shewanella violacea DSS12] gi|293326625|dbj|BAJ01356.1| cytidine/deoxycytidylate deaminase family protein [Shewanella violacea DSS12] Length = 169 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 50/118 (42%), Gaps = 17/118 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D FMS A+ + H V ++VK G VI G + + HAE+Q L Sbjct: 2 ALDQHFMSMAMEMA--HKAEAVGEVPVGAVLVKHGQVISAGFNYCIGLHDPSAHAEMQCL 59 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +AG+ T YVTLEPC+ CA ++ I R+V D +G Sbjct: 60 RQAGKVTENYRLLDTTLYVTLEPCA------MCAGAMVHSRIARLVFGAKDEKTGAAG 111 >gi|153001509|ref|YP_001367190.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185] gi|151366127|gb|ABS09127.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS185] Length = 174 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG+ I G ++ + HAE+ L EAG E R AT YVTLEPC+ Sbjct: 34 VGAVLVKDGLQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 92 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 93 -----MCAGAMVHSRIARVVFGARDEKTGAAG 119 >gi|23493630|dbj|BAC18599.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 292 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 LRA SD +LVG TV A+D R Q+ P ++ L S+ Sbjct: 113 LRAWSDVVLVGASTVRAEDYGGVVIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFF 172 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A AP IIVT+N DP + I+ + ++ L G + EGGA+ Sbjct: 173 TEAAAAP-IIVTDNTDPSRLAGLQAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGAS 231 Query: 298 VAHSFINSRLVD 309 V I++ ++D Sbjct: 232 VYAQMIDAGVID 243 >gi|322514212|ref|ZP_08067274.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976] gi|322119905|gb|EFX91914.1| tRNA-specific adenosine deaminase [Actinobacillus ureae ATCC 25976] Length = 196 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S+ D FM AL + + P A LI DG +IG G + HAE Sbjct: 34 LAISAQDIHFMQYALALADRAEAIDEI-PVGAVLIDSDGNIIGEGWNQVIQLADPSAHAE 92 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ G T YVTLEPC+ CA I+ + R+V D Sbjct: 93 MLAIRQAGKVQNNYRLLGCTLYVTLEPCT------MCAGAILHSRLHRLVFGASD 141 >gi|225849713|ref|YP_002729947.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1] gi|225645628|gb|ACO03814.1| tRNA-specific adenosine deaminase [Persephonella marina EX-H1] Length = 154 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 15/80 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IVKDG +IG+G + HAE+ A+EEA G T YVT+EPC Sbjct: 26 IGAVIVKDGEIIGKGHNQRIEKNNALYHAEIVAIEEACRNTGSWRLDGCTLYVTVEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVV 101 CA I++ I++VV Sbjct: 86 ------CAGAIMQSRIKKVV 99 >gi|158334126|ref|YP_001515298.1| cytosine/adenosine deaminase [Acaryochloris marina MBIC11017] gi|158304367|gb|ABW25984.1| Cytosine/adenosine deaminase [Acaryochloris marina MBIC11017] Length = 150 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA++ ++ GL + + ++VK+G ++GRG V HAE+ ALE G Sbjct: 6 FMDAAIQEAQR--GLAAGGIPIGSVVVKNGTIVGRGHNLRVQQGSAILHAEMSALETLGR 63 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + T Y TL PCS C I+ I RVV+ Sbjct: 64 QPAMFYQDVTLYTTLSPCSM------CTGAILLYKIPRVVI 98 >gi|332534515|ref|ZP_08410352.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas haloplanktis ANT/505] gi|332036083|gb|EGI72560.1| tRNA-specific adenosine-34 deaminase [Pseudoalteromonas haloplanktis ANT/505] Length = 171 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALEE 62 D+ +M AL +++ L P V ++VKD +I R +T HAE+ A+ E Sbjct: 7 DSYWMEQALLYAK-QAELLDEIP-VGAIVVKDNQLISVGYNRSITDNDPSAHAEMIAVRE 64 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ T YVTLEPCS CA ++ I+R+V D +G + Sbjct: 65 AGKVLNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGALDAKTGSAGSIMN 118 Query: 118 WLSQ 121 L + Sbjct: 119 LLQE 122 >gi|190347436|gb|EDK39700.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 150 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA----RGATAYVTLEPCS 80 P LI +DG V+GRG H E+ LE AG + T Y TL PCS Sbjct: 26 PIGGALISEDGTVLGRGHNLRFQKDSATLHGEISTLENAGRLKGSVYKNCTMYTTLSPCS 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C+ I G++RVVV ++ + W+ + GI V + E K + Sbjct: 86 M------CSGACIMYGVKRVVVGENETFMGAE----DWIRKSGIEVVNLNNQECKDLMAK 135 Query: 141 YLTRQ 145 ++ + Sbjct: 136 FIKER 140 >gi|260890091|ref|ZP_05901354.1| hypothetical protein GCWU000323_01253 [Leptotrichia hofstadii F0254] gi|260860114|gb|EEX74614.1| putative deoxycytidylate deaminase [Leptotrichia hofstadii F0254] Length = 161 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 53/126 (42%), Gaps = 36/126 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46 S+D FM A G+ S +PS AC+I +D +IG G Sbjct: 9 SWDEYFMGIAFL-----SGMRSKDPSTQVGACIIDEDKKIIGIGYNGFPMGSSDDSMPWG 63 Query: 47 -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 T Y HAE+ A+ + + + T YVT PC+ CA+ I++ GI++ Sbjct: 64 KEGEFLETKYPYVVHAELNAILNSIKSLKKCTIYVTHFPCNE------CAKAIVQSGIKK 117 Query: 100 VVVCVD 105 V+ D Sbjct: 118 VIYFSD 123 >gi|229194412|ref|ZP_04321217.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293] gi|228589068|gb|EEK47081.1| hypothetical protein bcere0001_100 [Bacillus cereus m1293] Length = 166 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 6 DIHFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R + K+ K+ S++N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166 >gi|225026664|ref|ZP_03715856.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353] gi|224956034|gb|EEG37243.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353] Length = 178 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/111 (27%), Positives = 52/111 (46%), Gaps = 17/111 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56 M + D +FM A++ ++ + + C+IV DG +I RG HAE Sbjct: 6 MRKYTEDEKFMKEAIKQAKKAEAIGDV--PIGCVIVHDGKIIARGYNKRNKDKTVLAHAE 63 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + A+++A ++ T Y+TLEPC CA I++ + RVV+ Sbjct: 64 LLAMKKACKKLGDWRLEDCTMYITLEPCQ------MCAGAIVQARVTRVVI 108 >gi|52424459|ref|YP_087596.1| hypothetical protein MS0404 [Mannheimia succiniciproducens MBEL55E] gi|52306511|gb|AAU37011.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 176 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 16/111 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 SFD + M+ AL + L P A L+ + G +IG G + HAE+ AL Sbjct: 6 SFDEKMMNRALFLADKAEALGEI-PVGAVLVDERGNIIGEGWNLSIVNSDPTAHAEIIAL 64 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A ++ + T YVTLEPC+ CA I+ I+R+V D Sbjct: 65 RNAAQKIQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGASD 109 >gi|239623044|ref|ZP_04666075.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522411|gb|EEQ62277.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 202 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D FM A+R + H + + C+IV+ G +I RG HAE+ +++ Sbjct: 54 DEGFMGEAIRQA--HKAAALGDVPIGCVIVRQGQIIARGYNRRNADKSVLSHAEIISIKR 111 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC P C+ I++ I RVV+ + +G L Sbjct: 112 ACKKLGDWRLEDCTMYVTLEPC------PMCSGAIVQARIPRVVIGCMNAKAGCAGSVLD 165 Query: 118 WLSQKGI 124 L + G Sbjct: 166 LLHEPGF 172 >gi|148269654|ref|YP_001244114.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1] gi|170288329|ref|YP_001738567.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2] gi|281411636|ref|YP_003345715.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila RKU-10] gi|147735198|gb|ABQ46538.1| CMP/dCMP deaminase, zinc-binding [Thermotoga petrophila RKU-1] gi|170175832|gb|ACB08884.1| CMP/dCMP deaminase zinc-binding [Thermotoga sp. RQ2] gi|281372739|gb|ADA66301.1| CMP/dCMP deaminase zinc-binding protein [Thermotoga naphthophila RKU-10] Length = 169 Score = 41.6 bits (96), Expect = 0.17, Method: Compositional matrix adjust. Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ I+ GI+RVV D PD Sbjct: 96 HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLIVNAGIKRVVYEKDYPD 147 >gi|255023462|ref|ZP_05295448.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL J1-208] Length = 156 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C+ I+ I +V DP +G Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAG 110 >gi|29826479|ref|NP_828785.1| putative riboflavin-specific deaminase/reductase [Streptomyces avermitilis MA-4680] gi|29611277|dbj|BAC75320.1| putative riboflavin-specific deaminase/reductase [Streptomyces avermitilis MA-4680] Length = 226 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 42/182 (23%), Positives = 79/182 (43%), Gaps = 9/182 (4%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A+S D + + ++ ++V +RA+SDAIL+G T+ D+P L Sbjct: 4 RPYVLLSAAMSVDGYLDDTSPERLRLSNAEDFDRVDQVRAESDAILIGANTMRRDNPRLL 63 Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 R+ + P+++ + LS D V+ V + V A Sbjct: 64 VNSDERRAQRVADGKPEYPLKVTVTQSGDLSADLNFWHHGGDKLVVTVDSAVEKVRATLG 123 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ + + D +L L RGV L+VEGG + + + L D + L + +++ Sbjct: 124 DLADVVGVGPEL-DWGLVLDELGRRGVGRLMVEGGGTIHTQLMAANLADEVHLAIAPLLV 182 Query: 321 GE 322 G+ Sbjct: 183 GQ 184 >gi|330995533|ref|ZP_08319436.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT 11841] gi|329575313|gb|EGG56858.1| putative ComE operon protein 2 [Paraprevotella xylaniphila YIT 11841] Length = 149 Score = 41.6 bits (96), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 36/119 (30%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 D R+ LR +R W V LIVKD ++I G Y G P Sbjct: 10 ELDLRY----LRMARIWAENSYCERRKVGALIVKDKMIISDG---YNGTPAGFENVCEDE 62 Query: 54 ---------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A+ + +G + GAT YVT PC C++ II+ GI++V Sbjct: 63 NHLTKPYVLHAEANAITKIARSGNNSEGATLYVTDAPCIE------CSKLIIQSGIKKV 115 >gi|322418061|ref|YP_004197284.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18] gi|320124448|gb|ADW12008.1| CMP/dCMP deaminase zinc-binding protein [Geobacter sp. M18] Length = 162 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + +IVKDG VI RG + HAE+ A+ +A ++ GAT YVTLEPC+ Sbjct: 27 IGAVIVKDGAVIARGHNLRESKQDPAAHAELIAIRKAAKKLSSWRLTGATLYVTLEPCTM 86 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C II + RVV DP +G Sbjct: 87 ------CMGAIILSRLDRVVFGSYDPKGGAAG 112 >gi|288942407|ref|YP_003444647.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180] gi|288897779|gb|ADC63615.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum DSM 180] Length = 166 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 52/126 (41%), Gaps = 17/126 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AL +R V ++V++G ++G G + + HAE+QAL + Sbjct: 9 DVHWMRHALELAR--CAAEEGEVPVGAVLVREGEILGEGWNRPIIRHDPSAHAEIQALRD 66 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG G+ YVTLEPC CA I+ + +V+ DP G Sbjct: 67 AGRRVGNYRLPGSILYVTLEPCVM------CAGAIVHARVAQVIYGAPDPKAGACGSVFD 120 Query: 118 WLSQKG 123 L G Sbjct: 121 LLPSDG 126 >gi|116874087|ref|YP_850868.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742965|emb|CAK22089.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 156 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V DG +IGR T+ HAE+ A+++A + GA YVTLEPC Sbjct: 25 IGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C+ I+ I +V DP +G Sbjct: 83 ----PMCSGAILLSRIEKVYYGAKDPKAGTAG 110 >gi|270291666|ref|ZP_06197882.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. M143] gi|270279751|gb|EFA25592.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus sp. M143] Length = 155 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVK+G +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKNGEIIGRGHNAREELQRAVMHAEIMAIENANA 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|257464722|ref|ZP_05629093.1| tRNA-adenosine deaminase [Actinobacillus minor 202] gi|257450382|gb|EEV24425.1| tRNA-adenosine deaminase [Actinobacillus minor 202] Length = 150 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ K G ++G G + HAE+QA+ AG+ + T YVTLEPC Sbjct: 18 PVGAVLVDKSGKIVGEGWNRSIILSDPTAHAEIQAIRMAGQHLQNYRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 P CA I+ I R+V D Sbjct: 78 ------PMCAGAILHSRIGRLVFGASD 98 >gi|110597776|ref|ZP_01386060.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM 13031] gi|110340683|gb|EAT59163.1| CMP/dCMP deaminase, zinc-binding [Chlorobium ferrooxidans DSM 13031] Length = 153 Score = 41.6 bits (96), Expect = 0.19, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 21/135 (15%) Query: 29 PSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79 P A ++ +G VIGRG HAE+ AL A + T VT+EPC Sbjct: 25 PVGAVIVDSNGHVIGRGYNQVESLCDATAHAEMIALTSAMATIGNKYLEDCTLAVTMEPC 84 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGIIVDRMMESEG 134 P CA I+ + RVV DP + SG G Q L+ + + +ME++ Sbjct: 85 ------PMCAGAIVNAKVGRVVFGAYDPKMGASGTVMNITGCQQLNHQPEVYGGIMENKC 138 Query: 135 KIFLHAYLTRQVEKR 149 + L + R++ K+ Sbjct: 139 RTLLQDFF-RELRKK 152 >gi|88703683|ref|ZP_01101399.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis KT71] gi|88702397|gb|EAQ99500.1| Cytidine and deoxycytidylate deaminase [Congregibacter litoralis KT71] Length = 167 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 11/80 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEAGE 65 FM+ AL+ ++ + V L+V+DG ++G G A G HAE+ AL A Sbjct: 24 FMARALQLAK--EAAEAGEVPVGALVVQDGRILGEGRNAQIGATDPTAHAEINALRAAAS 81 Query: 66 -----EARGATAYVTLEPCS 80 GAT YVTLEPCS Sbjct: 82 ALDNYRMPGATLYVTLEPCS 101 >gi|306828458|ref|ZP_07461653.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249] gi|304429257|gb|EFM32342.1| tRNA-specific adenosine deaminase [Streptococcus mitis ATCC 6249] Length = 155 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKDG +I RG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDGEIISRGHNAREELQRAVMHAEIMAIENANL 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|282164705|ref|YP_003357090.1| cytosine deaminase [Methanocella paludicola SANAE] gi|282157019|dbj|BAI62107.1| cytosine deaminase [Methanocella paludicola SANAE] Length = 145 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AAL ++ GL + ++V DG+++GRG V HAE+ LE AG Sbjct: 4 FMRAALDEAK--KGLREGGIPIGSVLVVDGVIVGRGHNRRVQQGSTIKHAEMDCLESAGR 61 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 R +T Y TL PC C+ ++ GI +VV+ Sbjct: 62 LRAATYRKSTLYSTLSPCDM------CSGAVLLYGIPKVVI 96 >gi|307544360|ref|YP_003896839.1| cytosine deaminase [Halomonas elongata DSM 2581] gi|307216384|emb|CBV41654.1| cytosine deaminase [Halomonas elongata DSM 2581] Length = 152 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AAL +R GL + ++V G+++G G V H E+ ALE AG Sbjct: 4 FMQAALDEAR--AGLDEGGIPIGSVLVHRGVILGGGRNRRVQLGSTVLHGEMDALENAGR 61 Query: 66 EA----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 ++ R +T Y TL PC+ C I+ GI RVV+ Sbjct: 62 QSADIYRESTLYTTLSPCAM------CTGAILLYGIPRVVI 96 >gi|149237721|ref|XP_001524737.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239] gi|146451334|gb|EDK45590.1| DRAP deaminase [Lodderomyces elongisporus NRRL YB-4239] Length = 622 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/118 (33%), Positives = 54/118 (45%), Gaps = 11/118 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAG 64 ++ ++M AL +R G T T +V C++V DG VI G + G HAE ALE+ Sbjct: 454 YNRKYMEMALDEAR-KCGETQTQFNVGCVLVLDGEVISTGHSRELEGNTHAEQCALEKYF 512 Query: 65 EE-------ARGATAYVTLEPCS-HYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSG 113 + G Y T+EPCS + PC I+ I V V +PDV V Sbjct: 513 AKNGGIRDVPLGTELYTTMEPCSLRLSGNLPCVDRILALPNITACFVGVMEPDVFVKN 570 >gi|331696725|ref|YP_004332964.1| bifunctional deaminase-reductase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951414|gb|AEA25111.1| bifunctional deaminase-reductase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 74/175 (42%), Gaps = 19/175 (10%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 +L AVS D + G G GS K +LR +D +LVG GTV A+ R Sbjct: 41 SLDGAVSVDGLSG--GLGSA-----ADKAVFGVLRRLADVVLVGAGTVRAEGYRGARRPT 93 Query: 213 -GLQEHSPMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 G P+ ++ LDP +L D+ + AP+++ T A R + Sbjct: 94 VGRALPPPIAVVTGSAGLDPGARLFTDTAV------APIVLTTAGAPGERRDALRAAGAD 147 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ LL L RG+ +L EGG A+ + + VD + L S ++G Sbjct: 148 VVELPDLAPPTLLAELGRRGLHRVLCEGGPALHGALAAADAVDELCLTLSPTLVG 202 >gi|255941100|ref|XP_002561319.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585942|emb|CAP93679.1| Pc16g10090 [Penicillium chrysogenum Wisconsin 54-1255] Length = 148 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSAVLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I ++RVV+ + + G + L KG V + +E K F+ Sbjct: 84 M------CTGACILYKVKRVVIGENKNFM----GGEELLLNKGKEVVVLDNAECKEFMTK 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FMKEKPE 140 >gi|242372784|ref|ZP_04818358.1| deaminase [Staphylococcus epidermidis M23864:W1] gi|242349557|gb|EES41158.1| deaminase [Staphylococcus epidermidis M23864:W1] Length = 168 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 68/165 (41%), Gaps = 23/165 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M A++ +R L + +IVKD VI R T HAE A+E Sbjct: 4 DNDYMRLAIKEARKAQELGEV--PIGAVIVKDNHVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A E T YVTLEPC CA I+ I RVV DP +G + Sbjct: 62 ASEVIGSWRLEDCTLYVTLEPCVM------CAGAIVMSRIPRVVYGAIDPKGGCTGSLMN 115 Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTR-QVEKRSHITLKI 156 L+Q + I+ ++E+E L + + +KRS KI Sbjct: 116 LLAQPQFNHRAIVESGILENECSTLLREFFKNIRQQKRSLKQAKI 160 >gi|114775692|ref|ZP_01451260.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1] gi|114553803|gb|EAU56184.1| cytosine deaminase [Mariprofundus ferrooxydans PV-1] Length = 145 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 16/102 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +F+ AA+ +R G+ + ++V DG ++GRG V HAE+ LE+AG Sbjct: 3 KFLRAAIDEARQ--GMAEGGIPIGSVLVIDGEIVGRGHNRRVQQGSAVLHAEMDCLEQAG 60 Query: 65 E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R AT Y TL PC C+ ++ GI RVVV Sbjct: 61 RLTAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVV 96 >gi|212224167|ref|YP_002307403.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus onnurineus NA1] gi|212009124|gb|ACJ16506.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus onnurineus NA1] Length = 630 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 3/134 (2%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEV--QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91 LI +D +V+G G H + +A E AG + + + PC H G C++ Sbjct: 467 LIKRDILVVGTGCWGIAAAMHGLLTPEAAEMAGPGLKAVCEALGIPPCLHMGSCVDCSRI 526 Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151 ++ + VD D+ V+G +W+S+K + + + G +F H + V Sbjct: 527 LLVLSALANALNVDISDLPVAGSAPEWMSEKAVAIGTYFVASG-VFTHLGVIPPVLGSQK 585 Query: 152 ITLKIAVSQDNMIG 165 +T + ++++G Sbjct: 586 VTKLLTDDIEDLLG 599 >gi|300853441|ref|YP_003778425.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528] gi|300433556|gb|ADK13323.1| cytidine deaminase [Clostridium ljungdahlii DSM 13528] Length = 136 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 7/51 (13%) Query: 54 HAEVQAL-EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAEV L E A ++ +T YVT PC P C + II CGI+RVV C Sbjct: 69 HAEVNCLLEVAPDDRESSTLYVTHMPC------PECQKLIITCGIKRVVYC 113 >gi|282877407|ref|ZP_06286230.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella buccalis ATCC 35310] gi|281300459|gb|EFA92805.1| cytidine and deoxycytidylate deaminase zinc-binding region [Prevotella buccalis ATCC 35310] Length = 146 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VK ++I G Y G P Sbjct: 9 LDQRY----LRMARIWAENSYCHRRQVGALVVKGNMIISDG---YNGTPSGFDNVCEDEN 61 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + G+T YVT PC CA+ II+ GI+RVV Sbjct: 62 GVTHPYVLHAEANAITKLARSSNNSDGSTLYVTASPC------IECAKLIIQAGIKRVV 114 >gi|283769499|ref|ZP_06342395.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bulleidia extructa W1219] gi|283103767|gb|EFC05153.1| cytidine and deoxycytidylate deaminase zinc-binding region [Bulleidia extructa W1219] Length = 157 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 50/103 (48%), Gaps = 18/103 (17%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 T Y HAE+ A+ + + T YV+L PC+ CA+ II+ GIRRVV D Sbjct: 66 TKYPYVVHAELNAILNSKWPVKDCTIYVSLFPCNE------CAKAIIQSGIRRVVYESD- 118 Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGK--IFLHAYLTRQVE 147 + +G ++ I RM+ES G I L ++ QVE Sbjct: 119 ---KYNG------TEMNIASKRMLESAGVELIKLPYSMSLQVE 152 >gi|229113696|ref|ZP_04243133.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3] gi|228669762|gb|EEL25167.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock1-3] Length = 166 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 21/146 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA + AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKNLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L + R++ K+ K+ S +N Sbjct: 142 LLTNFF-RELRKKRKAIKKLENSNEN 166 >gi|21672527|ref|NP_660594.1| hypothetical protein BUsg246 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091621|sp|Q8K9R4|Y246_BUCAP RecName: Full=Uncharacterized protein BUsg_246 gi|21623150|gb|AAM67805.1| hypothetical 20.0 kDa protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 151 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 17/116 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S+ D+ +M AL+++ ++ P A L+ ++ I IG G ++ HAE+ A Sbjct: 3 SNRDSYWMKIALKYA-YYAEENGEVPIGAILVFQEKI-IGTGWNSVISQNDSTAHAEIIA 60 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 L EAG + T YVTL+PC C II I+R+V D++ Sbjct: 61 LREAGRNIKNYRLVNTTLYVTLQPCMM------CCGAIINSRIKRLVFGASYKDLK 110 >gi|170718532|ref|YP_001783741.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336] gi|168826661|gb|ACA32032.1| CMP/dCMP deaminase zinc-binding [Haemophilus somnus 2336] Length = 166 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 40/165 (24%), Positives = 68/165 (41%), Gaps = 25/165 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S FD + M AL + L P A L+ K G ++ G + HAE+ A Sbjct: 3 SDFDEKMMRYALSLADKAEALGEI-PVGAVLVDKQGDILAEGWNLSIIHNDPTAHAEIIA 61 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 L +AG++ + T YVTLEPC+ CA I+ I R+V D G Sbjct: 62 LRQAGQKLQNYRLLDTTLYVTLEPCT------MCAGAILHSRIGRLVFGAYDYKTGAVGS 115 Query: 115 GLQWLSQKGIIVDRMMESEGKIF-------LHAYLTRQVEKRSHI 152 + + + + M+E G + + + ++ +++ H+ Sbjct: 116 RFHFFNDYKM--NHMLEITGGVLQEECSQKISTFFQKRRKQKKHL 158 >gi|303251559|ref|ZP_07337733.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303252205|ref|ZP_07338373.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648988|gb|EFL79176.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649557|gb|EFL79739.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 174 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + + P A L+ ++G +IG G + HAE Sbjct: 12 LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 70 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ R T YVTLEPC+ CA I+ +RR+V D Sbjct: 71 MLAIRQAGKVQRNYRLLDCTLYVTLEPCT------MCAGAILHSRLRRLVFGASD 119 >gi|283779562|ref|YP_003370317.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM 6068] gi|283438015|gb|ADB16457.1| CMP/dCMP deaminase zinc-binding protein [Pirellula staleyi DSM 6068] Length = 160 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 16/110 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M +D F+ AA+ +R +V P ++VK+G +IGRG ++ HAE Sbjct: 1 MTSPHYDHEFLEAAIELARENVRSGKGGP-FGSVVVKEGKIIGRGENRVTSSLDPSAHAE 59 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + A+ +A ++ + G T Y + +PC P C I I RVV Sbjct: 60 IVAIRDACQQQQNFSLAGTTIYASCQPC------PMCLSAIYWSRIDRVV 103 >gi|269126013|ref|YP_003299383.1| bifunctional deaminase-reductase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310971|gb|ACY97345.1| bifunctional deaminase-reductase domain protein [Thermomonospora curvata DSM 43183] Length = 229 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 61/143 (42%), Gaps = 5/143 (3%) Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA +D ++VG GTV A+ G Q +P I+ L LDS + V Sbjct: 57 LRAMADVVIVGAGTVRAEG--YGPVRPGPQGQAPPLAIVSRRLDLDLDSPVFTEPKARTV 114 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ + P L A R + + D D + + L RG LL EGG AV Sbjct: 115 LLTVQAAPPERLRAAERVAEVIMAGEDGIDFSRAVRELAARGHRRLLCEGGPAVLARAAA 174 Query: 305 SRLVDSIILYRSQIVIGEGGIPS 327 ++D + L S +++ G PS Sbjct: 175 DGVLDELCLTLSPMLV--AGDPS 195 >gi|126139263|ref|XP_001386154.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054] gi|126093436|gb|ABN68125.1| DRAP deaminase [Scheffersomyces stipitis CBS 6054] Length = 585 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67 +FM +L + T T +V ++V G V+ G + G HAE ALE+ EE Sbjct: 435 KFMELSLEMAN-KCDETQTQYNVGAVLVNRGKVLATGHSRELPGNTHAEQCALEKYFEET 493 Query: 68 ------RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +G Y T+EPC+ + PCA II I+ V + +PD V Sbjct: 494 GKREIPKGTEIYTTMEPCTLRLSGNIPCADRIIGTTIKTCFVGIVEPDTFVKN 546 >gi|150021636|ref|YP_001306990.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429] gi|149794157|gb|ABR31605.1| CMP/dCMP deaminase, zinc-binding [Thermosipho melanesiensis BI429] Length = 170 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G +T Y+T +PCS CA+ II GI+RVV D PD Sbjct: 94 HAEQNALMQAAKFGISTNNSTMYITHKPCS------VCARLIINAGIKRVVFINDYPD 145 >gi|295398379|ref|ZP_06808419.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563] gi|294973332|gb|EFG49119.1| cytidine/deoxycytidylate deaminase [Aerococcus viridans ATCC 11563] Length = 175 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 57/144 (39%), Gaps = 20/144 (13%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + ++V G +IGRG T+ HAE+ A+ EA A YVTLEPC Sbjct: 38 IGAVVVYQGEIIGRGHNLRETSQDATTHAEILAIREANRNRASWRLADADLYVTLEPC-- 95 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P C+ +I+ IR V D +G + L ++ +M E K Sbjct: 96 ----PMCSGAMIQSRIRHVYFGAYDQKGGTAGTLMNLLDDSRFNHQVEVIGGVMHEECKA 151 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQ 160 L + +KR + + K V Sbjct: 152 LLQDFFIELRKKRKNSSRKPKVEN 175 >gi|225378688|ref|ZP_03755909.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM 16841] gi|225209525|gb|EEG91879.1| hypothetical protein ROSEINA2194_04358 [Roseburia inulinivorans DSM 16841] Length = 161 Score = 41.2 bits (95), Expect = 0.22, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 47/146 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A+ G+ S +P+ AC++ D ++ G Y G P Sbjct: 10 SWDEYFMGVAML-----TGMRSKDPNTQVGACIVSADHKILSMG---YNGLPTGCSDDEF 61 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 H+E+ A L G G+T YV+L PC+ CA+ II+ Sbjct: 62 PWGREGAPLENKYLFTTHSELNAILNYRGGSLEGSTIYVSLFPCNE------CAKAIIQA 115 Query: 96 GIRRVVVCVDD----PDVRVSGRGLQ 117 GI+R+V D P V S R L+ Sbjct: 116 GIKRIVYDSDKYDGTPSVVASKRMLK 141 >gi|238750377|ref|ZP_04611878.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380] gi|238711308|gb|EEQ03525.1| tRNA-specific adenosine deaminase [Yersinia rohdei ATCC 43380] Length = 195 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 54 VGAILVLDNQVIGEGWNRPIRNNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPCVM 113 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G L L G+ Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 150 >gi|304384459|ref|ZP_07366862.1| competence protein ComEB [Prevotella marshii DSM 16973] gi|304334453|gb|EFM00743.1| competence protein ComEB [Prevotella marshii DSM 16973] Length = 147 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 47/119 (39%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V L+VKD ++I G Y G P Sbjct: 10 LDLRY----LRMARIWAENSYCQRRKVGALVVKDKMIISDG---YNGTPSGFENICEDED 62 Query: 54 --------HAEVQA---LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A L + + +T YVT PC C++ II+ GI+RVV Sbjct: 63 NTTKPYVLHAEANAITKLARSSNNSDNSTLYVTASPCIE------CSKLIIQAGIKRVV 115 >gi|282897517|ref|ZP_06305518.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein [Raphidiopsis brookii D9] gi|281197612|gb|EFA72507.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein [Raphidiopsis brookii D9] Length = 185 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 18/112 (16%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQAL 60 + +MS AL+ ++ + + V C+IV G +IG+G HAE+ A+ Sbjct: 16 YHQGWMSEALKLAQ--IAGDAGEVPVGCIIVNSQGDLIGQGENRKQRDQDPTAHAEIVAI 73 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A + T YVTLEPC P CA II ++ +V VDDP Sbjct: 74 RSAARTLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDP 119 >gi|117919687|ref|YP_868879.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3] gi|117612019|gb|ABK47473.1| tRNA-adenosine deaminase [Shewanella sp. ANA-3] Length = 222 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 15/98 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK G I G ++ + C HAE+Q L AG+ T YVTLEPC+ Sbjct: 81 VGAVLVKGGQQIAAGYNLSISEHDPCAHAEIQCLRAAGQTIENYRLLDTTLYVTLEPCAM 140 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 CA ++ I RVV D +G L L Sbjct: 141 ------CAGAMVHSRIARVVFGAKDEKTGAAGTVLNLL 172 >gi|320547592|ref|ZP_08041877.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC 9812] gi|320447667|gb|EFW88425.1| tRNA-specific adenosine deaminase [Streptococcus equinus ATCC 9812] Length = 168 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVKDG +IGRG A HAE+ A+ EA E Sbjct: 12 FMREALKEAQ--KSLEKEEIPIGCVIVKDGEIIGRGHNAREEQQKAILHAEIMAINEANE 69 Query: 66 EARG-----ATAYVTLEPC 79 + +VT+EPC Sbjct: 70 NEGNWRLLDSMLFVTIEPC 88 >gi|304413544|ref|ZP_07395017.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1] gi|304284387|gb|EFL92780.1| CMP/dCMP deaminase [Candidatus Regiella insecticola LSR1] Length = 181 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 16/94 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L++++ I IG G + + HAE+ AL +AG++ + AT YVTLEPC Sbjct: 49 PVGAVLVLQNKI-IGEGWNQPIIHHDPSAHAEIMALRQAGQQQKNYRLPDATLYVTLEPC 107 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA +I I R+V +D + G Sbjct: 108 VM------CAGAMIHSRISRLVYGANDNKIGAVG 135 >gi|218132702|ref|ZP_03461506.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC 43243] gi|217992428|gb|EEC58431.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC 43243] Length = 160 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 23/126 (18%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-------TAYGGCPHAEVQA 59 D ++M A++ +R + + + C+IV +I RG T G HAE+ A Sbjct: 9 DEKYMKEAIKQARKAYKIGES--PIGCVIVYQNKIIARGYNRRNIDKTTLG---HAEITA 63 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + +A + T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 64 IRKASKVIGDWRLEDCTIYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGCAGS 117 Query: 115 GLQWLS 120 L L Sbjct: 118 VLNLLE 123 >gi|126729047|ref|ZP_01744861.1| deoxycytidylate deaminase [Sagittula stellata E-37] gi|126710037|gb|EBA09089.1| deoxycytidylate deaminase [Sagittula stellata E-37] Length = 152 Score = 41.2 bits (95), Expect = 0.23, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 28/111 (25%) Query: 21 HVGLTSTNPS--VACLIVKDG---IVIG-----RGV-----------TAYGGCPHAEVQA 59 HV S +PS V C++V + + +G RGV T Y HAE A Sbjct: 21 HVATASRDPSTKVGCILVDEQRRLVGMGYNGFPRGVVDLPERYEDRPTKYLMVQHAEANA 80 Query: 60 -LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 L+ G+TAY+T PCS+ CA +I+ G++RVV +PD+ Sbjct: 81 VLQSPSNSLAGSTAYLTAPPCSN------CAGLLIQAGVKRVVSLGCNPDL 125 >gi|46143725|ref|ZP_00134574.2| COG0590: Cytosine/adenosine deaminases [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208056|ref|YP_001053281.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae L20] gi|126096848|gb|ABN73676.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 189 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + + P A L+ ++G +IG G + HAE Sbjct: 27 LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 85 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ R T YVTLEPC+ CA I+ +RR+V D Sbjct: 86 MLAIRQAGKVQRNYRLLDCTLYVTLEPCT------MCAGAILHSRLRRLVFGASD 134 >gi|297572271|ref|YP_003698045.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium haemolyticum DSM 20595] gi|296932618|gb|ADH93426.1| CMP/dCMP deaminase zinc-binding protein [Arcanobacterium haemolyticum DSM 20595] Length = 143 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 46/112 (41%), Gaps = 16/112 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE- 65 M A+ +R G P A ++ DG VIGRG C HAEV AL EA Sbjct: 1 MHEAMEIAR-RAGADGDVPVGAVILGPDGGVIGRGWNTREADADPCGHAEVNALREAARA 59 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 G T VTLEPC+ CA I+ + RVV D +G Sbjct: 60 LGRWNLSGCTLVVTLEPCTM------CAGAIVNSRVSRVVFGAWDAKAGAAG 105 >gi|218438113|ref|YP_002376442.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424] gi|218170841|gb|ACK69574.1| CMP/dCMP deaminase zinc-binding [Cyanothece sp. PCC 7424] Length = 147 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA+ +R GL + ++VKDG ++GRG V HAE+ L AG Sbjct: 8 FMQAAIAEARQ--GLQEGGIPIGSVLVKDGKILGRGHNKRVQDNDPVTHAEIDCLRNAGR 65 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + Y TL PC CA +++ GI++V+ Sbjct: 66 VGQYQDTILYSTLMPCY------LCAGAVVQFGIKKVIA 98 >gi|328952357|ref|YP_004369691.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans DSM 11109] gi|328452681|gb|AEB08510.1| CMP/dCMP deaminase zinc-binding protein [Desulfobacca acetoxidans DSM 11109] Length = 167 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 16/113 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 + D +M A+ ++ L P A +I K G +IG+G + ++ HAE+ A Sbjct: 17 EAIDQAYMCLAIGEAKKASSLQEV-PVGAVVIDKAGKIIGQGHNQPIASHDPSAHAEIVA 75 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 L +A +R T YVTLEPC C +++ +RR+V DDP Sbjct: 76 LRQASACSRNYRLPDCTMYVTLEPCIM------CIGAVLQARLRRLVYGADDP 122 >gi|257058547|ref|YP_003136435.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8802] gi|256588713|gb|ACU99599.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8802] Length = 181 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D+KKL++ L +G +L ++GG V SF+ L+D II+ R I++G+G Sbjct: 94 DIKKLISQLNQKGYNNLYIDGGQ-VIQSFLQEDLIDEIIITRVPIILGQG 142 >gi|153952715|ref|YP_001393480.1| hypothetical protein CKL_0054 [Clostridium kluyveri DSM 555] gi|219853386|ref|YP_002470508.1| hypothetical protein CKR_0043 [Clostridium kluyveri NBRC 12016] gi|146345596|gb|EDK32132.1| TadA [Clostridium kluyveri DSM 555] gi|219567110|dbj|BAH05094.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 145 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK+ +I R T HAE+ A+ A + + + YVTLEPC Sbjct: 23 VGAVVVKNNNIISRAYNLKETLKDSTAHAEILAIRSASKVVKNWRLKDCSMYVTLEPC-- 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 P CA I++C I R+ + DP Sbjct: 81 ----PMCAGAILQCRISRLYIGTFDP 102 >gi|325286502|ref|YP_004262292.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM 7489] gi|324321956|gb|ADY29421.1| CMP/dCMP deaminase zinc-binding protein [Cellulophaga lytica DSM 7489] Length = 146 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 38/139 (27%), Positives = 56/139 (40%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR ++ W V +IVKD ++I G Y G P Sbjct: 14 KYDEAYLRMAQEWGKLSYCKRKQVGAIIVKDRMIISDG---YNGTPTGFENICEDEEGYT 70 Query: 54 -----HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+TL PC C++ I + GI RVV Sbjct: 71 KWYVLHAEANAISKVASSTQSCTGATLYITLSPCKE------CSKLIHQSGIVRVVY--- 121 Query: 106 DPDVRVSGRGLQWLSQKGI 124 + GL++L + GI Sbjct: 122 -QNAYKDDSGLKFLEKAGI 139 >gi|294669183|ref|ZP_06734263.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308815|gb|EFE50058.1| tRNA-specific adenosine deaminase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 246 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 56/124 (45%), Gaps = 23/124 (18%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC-------PH 54 P + ARFM AL + + V ++V++G V+ TA+ C H Sbjct: 87 PPAEEAARFMQLALH--QAEAAAAAGEVPVGAVVVRNGEVLS---TAHNRCVADCDIGSH 141 Query: 55 AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE++AL EAG + G Y+TLEPC+ CA +I+ + RVV +P Sbjct: 142 AELRALAEAGRQTGSYRLDGCDVYITLEPCAM------CASALIQARVARVVYGAAEPKS 195 Query: 110 RVSG 113 +G Sbjct: 196 GAAG 199 >gi|296123852|ref|YP_003631630.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus DSM 3776] gi|296016192|gb|ADG69431.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus DSM 3776] Length = 166 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 46/108 (42%), Gaps = 17/108 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64 R+M AL ++ + +IVKD +IG HAE+ A+ +A Sbjct: 18 RWMRQALDLAQ--QAFAEEEVPIGAVIVKDDQIIGAAWNQREQLKDPTAHAEIVAITQAA 75 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 E T YVTLEPC P CA I++ I RVV + DP Sbjct: 76 EVIGDWRLEDCTLYVTLEPC------PMCAGAIVQARIPRVVYGITDP 117 >gi|206603205|gb|EDZ39685.1| Putative zinc-binding cytidine/deoxycytidylate deaminase [Leptospirillum sp. Group II '5-way CG'] Length = 162 Score = 41.2 bits (95), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 16/118 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D R+M+ AL ++ + P A L+ +G V+GRG + + HAE+ AL Sbjct: 10 NMDERWMTEALSEAKTAMKKNEI-PIGALLVDGNGTVLGRGHNQRIGSMDPTAHAEIVAL 68 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +G + G T YVT+EPC C ++E + VV + +P V+G Sbjct: 69 RSSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREPRWGVTG 120 >gi|324324011|gb|ADY19271.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 166 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R + K+ K+ S++N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166 >gi|313889859|ref|ZP_07823501.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus pseudoporcinus SPIN 20026] gi|313121904|gb|EFR45001.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus pseudoporcinus SPIN 20026] Length = 174 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG A HAE+ A+ EA Sbjct: 12 FMREALKEA--EKSLVKAEIPIGCVIVKDGKIIGRGHNAREELNQAIMHAEIMAINEANA 69 Query: 66 EARG-----ATAYVTLEPC 79 + + +VT+EPC Sbjct: 70 HEKNWRLLETSLFVTIEPC 88 >gi|17541138|ref|NP_502546.1| hypothetical protein JC8.4 [Caenorhabditis elegans] gi|6425182|emb|CAB05231.1| C. elegans protein JC8.4, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 176 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 20/117 (17%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG--GCP--HAEVQ 58 +S+ D F+ A + L V C+ V +G IGRG G P HAE+ Sbjct: 6 LSAEDTAFLEKAFELA--QEALDEDEVPVGCVFVVNGTEIGRGRNRVNETGDPTRHAEMV 63 Query: 59 ALEEAGEEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A+ E +E + +T YV+LEPC C+ + + GIR++V ++P Sbjct: 64 AVTEMWKEHGTGCEDLLKKSTLYVSLEPCIM------CSSAMYQLGIRKMVYGAENP 114 >gi|238762806|ref|ZP_04623775.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC 33638] gi|238699111|gb|EEP91859.1| tRNA-specific adenosine deaminase [Yersinia kristensenii ATCC 33638] Length = 194 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G G HAE+ AL + G+ + AT YVTLEPC Sbjct: 52 VGAILVLDNQVIGEGWNRSIGDNDPTAHAEIMALRQGGQAVQNYRLIDATLYVTLEPCVM 111 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 112 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 148 >gi|332519190|ref|ZP_08395657.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4] gi|332045038|gb|EGI81231.1| CMP/dCMP deaminase, zinc-binding [Lacinutrix algicola 5H-3-7-4] Length = 143 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 60/144 (41%), Gaps = 36/144 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 ++ A LR ++ W V LIVKD ++I G + G P Sbjct: 8 KYDKAYLRIAQEWGKLSHCKRKQVGALIVKDRMIISDG---FNGTPTGFENPCEDEEGYT 64 Query: 54 -----HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+TL PC C++ I + GI RVV Sbjct: 65 KWYVLHAEANAILKVASSTQSCNGATLYITLSPCKE------CSKLIHQAGIIRVVYKEG 118 Query: 106 DPDVRVSGRGLQWLSQKGIIVDRM 129 D GL++L + GI ++R+ Sbjct: 119 YKD----DSGLRFLEKAGIEIERI 138 >gi|313900948|ref|ZP_07834438.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] gi|312954368|gb|EFR36046.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] Length = 151 Score = 41.2 bits (95), Expect = 0.25, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 17/107 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 +M AALR + + + C+IVKD +I RG T HAE+ A+++A + Sbjct: 5 YMRAALREAEKAKKIDEV--PIGCVIVKDDKIIARGHNLRETKQQSINHAEIIAIQKACK 62 Query: 66 EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + YVTLEPC CA I++ IR V+ DP Sbjct: 63 KVGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGTADP 103 >gi|120600291|ref|YP_964865.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1] gi|120560384|gb|ABM26311.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1] Length = 497 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 43/99 (43%), Gaps = 14/99 (14%) Query: 46 VTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 +T YG HAE++AL A G GAT Y T PC + CA+ I+ G+ +VV Sbjct: 337 ITEYGRAVHAEMEALMSAARTGISVLGATLYTTTFPCHN------CAKHIVAAGVGKVVF 390 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 P + L I VDR E K+ + + Sbjct: 391 IEPYPKSFATK-----LHSDSIKVDRFNGDETKVHFYPF 424 >gi|306834459|ref|ZP_07467572.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC 700338] gi|304423261|gb|EFM26414.1| tRNA-specific adenosine deaminase [Streptococcus bovis ATCC 700338] Length = 168 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVK+G +IGRG A HAE+ A+++A E Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDANE 69 Query: 66 EARG-----ATAYVTLEPC 79 +T +VT+EPC Sbjct: 70 NEGNWRLLDSTLFVTIEPC 88 >gi|227486589|ref|ZP_03916905.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172] gi|227235407|gb|EEI85422.1| nucleoside deaminase [Anaerococcus lactolyticus ATCC 51172] Length = 158 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEE 62 D FM+ A+ ++ + P A ++ D IV GRG Y G HAE+ AL+E Sbjct: 9 DKFFMTEAINEAKLAKSIDEV-PIGAVVVCGDRIV-GRGHNFTYKGKSALNHAEIYALKE 66 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 AG+ T YVTLEPC CA I+ ++R+V+ DP Sbjct: 67 AGKNIGDFRLEECTMYVTLEPCLM------CAGAIMHSRVKRLVIACKDP 110 >gi|307153713|ref|YP_003889097.1| bifunctional deaminase-reductase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983941|gb|ADN15822.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 7822] Length = 227 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 42/195 (21%), Positives = 76/195 (38%), Gaps = 13/195 (6%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202 KR H + +A++ D I + KN + AQ DA+L G GT+ A Sbjct: 2 KRPHTLVVLAMTADGKIADKHSSAARFGSDADKNHLETQIAQVDAVLFGAGTLRAYHTSF 61 Query: 203 --DDPE-LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 +PE L R + P+ I+ L+ + + + + L ++ T + Sbjct: 62 PISNPELLQWRKQQHKPPQPVHIVCSASGNLNPEMRFFRQS-LPRWLLTTHRGENTWQQT 120 Query: 260 FRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + I+ D D + K G+ L + GG + S + + L+D L Sbjct: 121 NSEGFERILKADDLDNRINWLKAFEQFTTLGLEKLAILGGGGLVASLLEAALIDEFYLTL 180 Query: 316 SQIVIGEGGIPSPLE 330 +++G P+P+E Sbjct: 181 CPLLLGGTDAPTPVE 195 >gi|60688555|gb|AAX30382.1| SJCHGC03167 protein [Schistosoma japonicum] gi|226479958|emb|CAX73275.1| putative 6030466N05Rik protein [Schistosoma japonicum] Length = 98 Score = 41.2 bits (95), Expect = 0.26, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%) Query: 54 HAEVQALEEAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 HAE+ A+ E +RG T Y T+ PC+ CA+ II+ GI+ VV D + S Sbjct: 15 HAELNAVLNRNEAHSRGCTLYSTMFPCNE------CAKVIIQAGIKEVVYHSDKKNRTAS 68 Query: 113 GRGLQWLSQKGIIVDR 128 + ++L +K I R Sbjct: 69 NQAAKYLFKKAGISMR 84 >gi|325860320|ref|ZP_08173442.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A] gi|325482199|gb|EGC85210.1| putative dCMP deaminase [Prevotella denticola CRIS 18C-A] Length = 170 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 35/130 (26%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQA- 59 W V L+VK+ ++I G Y G P HAE A Sbjct: 35 WAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDEAGVTKSYVLHAEANAI 91 Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 L +G + G+T YVT PC CA+ II+ GI RVV R++ G+ Sbjct: 92 TKLARSGNNSEGSTLYVTASPC------IECAKLIIQAGISRVVYA---EKYRLTD-GID 141 Query: 118 WLSQKGIIVD 127 L + GI V+ Sbjct: 142 LLKRAGIEVE 151 >gi|238926636|ref|ZP_04658396.1| dCMP deaminase [Selenomonas flueggei ATCC 43531] gi|238885582|gb|EEQ49220.1| dCMP deaminase [Selenomonas flueggei ATCC 43531] Length = 158 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 42/157 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM AL FS + S +P AC++ +D ++G G Y G P Sbjct: 4 SWDEYFMGVAL-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDHEY 55 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A +G Y +L PC+ C + II+ G Sbjct: 56 PWGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 IR V+ D S + + + + R ME+E Sbjct: 110 IREVIYLSDKYATADSTKASKRMLASANVTCRRMETE 146 >gi|228472740|ref|ZP_04057498.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga gingivalis ATCC 33624] gi|228275791|gb|EEK14557.1| cytidine/deoxycytidylate deaminase family protein [Capnocytophaga gingivalis ATCC 33624] Length = 150 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 65/159 (40%), Gaps = 38/159 (23%) Query: 1 MPVSSFDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------ 53 +P R+ A +R ++ W S V +IVKD ++I G Y G P Sbjct: 2 LPDMEKQERYDRAYMRMAQEWAKLSYSQRKQVGAIIVKDRMIISDG---YNGTPTGFDNC 58 Query: 54 -------------HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGI 97 HAE A+ + + GAT Y+T+ PC C++ I + GI Sbjct: 59 CEDAQGDTLWYVLHAEANAILKVAASTQSCAGATLYITMSPCRE------CSKLIHQAGI 112 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME--SEG 134 RVV D G+++L + G+ + + E SEG Sbjct: 113 VRVVY----KDSYRDTSGIEFLEKAGVEILHLPETSSEG 147 >gi|161485975|ref|NP_738399.2| hypothetical protein CE1789 [Corynebacterium efficiens YS-314] gi|259507401|ref|ZP_05750301.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314] gi|259165026|gb|EEW49580.1| riboflavin specific deaminase [Corynebacterium efficiens YS-314] Length = 235 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 9/132 (6%) Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 LRA SD +LVG TV A+D R Q+ P ++ L S+ Sbjct: 56 LRAWSDVVLVGASTVRAEDYGGVVIGEAGREARRRRGQQPVPPIAVISSSLDLDPGSRFF 115 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A AP IIVT+N DP + I+ + ++ L G + EGGA+ Sbjct: 116 TEAAAAP-IIVTDNTDPSRLAGLQAAGARILQVGTLGVGLVVDKLRQEGFARISCEGGAS 174 Query: 298 VAHSFINSRLVD 309 V I++ ++D Sbjct: 175 VYAQMIDAGVID 186 >gi|88813490|ref|ZP_01128725.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231] gi|88789280|gb|EAR20412.1| zinc-binding domain protein [Nitrococcus mobilis Nb-231] Length = 181 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 19/127 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 VS D FM+ AL +R V ++V+ V+G G + HAE++ Sbjct: 22 VSDQDQAFMARALELARR--AQAHGEVPVGAVVVQRERVVGEGYNRPIATRDPTAHAEIE 79 Query: 59 ALEEAGEEARGA------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL AG+ A GA T YVTLEPC+ C +I + R+V DP Sbjct: 80 ALRAAGQ-ALGAYRLPATTLYVTLEPCAM------CVGALIHARVARLVFGAHDPKTGAC 132 Query: 113 GRGLQWL 119 G L+ + Sbjct: 133 GGALRLI 139 >gi|325577729|ref|ZP_08148004.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC 33392] gi|325160474|gb|EGC72600.1| tRNA-specific adenosine deaminase [Haemophilus parainfluenzae ATCC 33392] Length = 172 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D +FM AL + L P A L+ +G ++G G + HAE+ A Sbjct: 3 SDLDEKFMQHALMLADRAEALGEI-PVGAVLVGDEGNILGEGWNLSIIENDPTAHAEIVA 61 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L A + + T YVTLEPC+ CA I+ I+R+V D Sbjct: 62 LRNAAQNIQNYRLLNTTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 107 >gi|237748635|ref|ZP_04579115.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13] gi|229379997|gb|EEO30088.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes OXCC13] Length = 171 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V DG +I RG +TA+ HAE+ AL A YVTLEPCS Sbjct: 25 VGAVVVLDGQIIARGFNQPITAHDPTAHAEIVALRNAARFCGNYRLPDCELYVTLEPCSM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 C +I ++RV+ +P G + +Q + + ++E+E + Sbjct: 85 ------CVGAMIHARLKRVIFGAKEPRTGACGSIIDLFAQNELNHHTTVTGGVLENESSV 138 Query: 137 FLHAYL 142 L + Sbjct: 139 LLKTFF 144 >gi|229009532|ref|ZP_04166761.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048] gi|229131029|ref|ZP_04259944.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196] gi|228652424|gb|EEL08346.1| hypothetical protein bcere0014_100 [Bacillus cereus BDRD-ST196] gi|228751743|gb|EEM01540.1| hypothetical protein bmyco0001_110 [Bacillus mycoides DSM 2048] Length = 164 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 4 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ I+RVV DP +G + Sbjct: 62 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S N Sbjct: 116 LLTDERFNHQCEVVPGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164 >gi|165975988|ref|YP_001651581.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149887|ref|YP_001968412.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307247548|ref|ZP_07529592.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307252128|ref|ZP_07534027.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256596|ref|ZP_07538377.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307261030|ref|ZP_07542712.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307263211|ref|ZP_07544831.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|165876089|gb|ABY69137.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189915018|gb|ACE61270.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306855913|gb|EFM88072.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860428|gb|EFM92442.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865006|gb|EFM96908.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306869332|gb|EFN01127.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871428|gb|EFN03152.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 196 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + + P A L+ ++G +IG G + HAE Sbjct: 34 LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ R T YVTLEPC+ CA I+ +RR+V D Sbjct: 93 MLAIRQAGKVQRNYRLLDCTLYVTLEPCTM------CAGAILHSRLRRLVFGASD 141 >gi|307154712|ref|YP_003890096.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822] gi|306984940|gb|ADN16821.1| CMP/dCMP deaminase zinc-binding protein [Cyanothece sp. PCC 7822] Length = 147 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 14/99 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM AA+ ++ GL + ++VKDG ++GRG V HAE+ L AG Sbjct: 8 FMQAAIAEAKQ--GLQEGGIPIGSVLVKDGQIVGRGHNKRVQDNDPVTHAEIDCLRNAGR 65 Query: 66 EARGATA--YVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + Y TL PC CA +++ GI+RV+ Sbjct: 66 IGQYGDSILYSTLMPCY------LCAGAVVQFGIKRVIA 98 >gi|329889978|ref|ZP_08268321.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC 11568] gi|328845279|gb|EGF94843.1| tRNA-specific adenosine deaminase [Brevundimonas diminuta ATCC 11568] Length = 154 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 34/88 (38%), Positives = 44/88 (50%), Gaps = 17/88 (19%) Query: 31 VACLIVKD--GIVIGRG----VTAYGGCPHAEVQALEEAGEEARGA-----TAYVTLEPC 79 V +IV + G V+GRG +TA+ HAE+ AL +A + + T YVTLEPC Sbjct: 17 VGAVIVDENTGEVLGRGQNGPITAHDPSAHAEIVALRDAAAKLQNYRLTDLTLYVTLEPC 76 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + CA I I RVV DDP Sbjct: 77 AM------CAGAISHARIGRVVWGADDP 98 >gi|328768239|gb|EGF78286.1| hypothetical protein BATDEDRAFT_26851 [Batrachochytrium dendrobatidis JAM81] Length = 156 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 8/95 (8%) Query: 51 GCPHAEVQALEEAG------EEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVC 103 G HAE L +A + R A Y T+EPCS + PC +I+ GI +V++ Sbjct: 54 GNTHAEQVCLIKASHAGLDLDRMRDAIMYTTMEPCSLRLSGNLPCVNRLIDAGISKVLIG 113 Query: 104 V-DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 + + P++ + G+Q L+ GI V + +G+ F Sbjct: 114 ILEPPNLVENCSGVQMLTDAGIQVVHLTGFQGRSF 148 >gi|304390572|ref|ZP_07372525.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326328|gb|EFL93573.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 180 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57 +SS + R + A R ++ G P A ++ +GIV G G+ Y HAE+ Sbjct: 29 LSSAEVRALDTAYRLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL EA +G T TLEPC+ CA I+ I R++ DP Sbjct: 88 VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141 Query: 113 G 113 G Sbjct: 142 G 142 >gi|126666387|ref|ZP_01737366.1| bifunctional deaminase-reductase-like protein [Marinobacter sp. ELB17] gi|126629188|gb|EAZ99806.1| bifunctional deaminase-reductase-like protein [Marinobacter sp. ELB17] Length = 301 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/149 (24%), Positives = 73/149 (48%), Gaps = 10/149 (6%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +H +RA SDA++VG GT +AD+P+LT R +P+R+++D ++ + T Sbjct: 114 HLHRIRALSDAVVVGAGTAVADNPQLTVRRT--SGDNPVRVVIDRRRRVPASHHLF-TDN 170 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEG 294 AP + + D + +++ C ++L +L G+ + +EG Sbjct: 171 AAPTLRLVAGDYQPGPKPKLQGLTSVLEVPCLGHNQQPVCPAQILAVLADFGLHKIFIEG 230 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G +F+ ++L+D + + + ++IG G Sbjct: 231 GGVTVSAFLRAQLLDRLHVMVAPMIIGSG 259 >gi|114562317|ref|YP_749830.1| CMP/dCMP deaminase, zinc-binding [Shewanella frigidimarina NCIMB 400] gi|114333610|gb|ABI70992.1| tRNA-adenosine deaminase [Shewanella frigidimarina NCIMB 400] Length = 189 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D ++M A++ + L P V ++VKD ++I G + + HAE++ + Sbjct: 30 AIDEKWMRLAMQLAE-QAELKGEVP-VGAVLVKDDVLIASGCNLSIVNHDPTAHAEMECI 87 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +AG E R T YVTLEPC+ CA ++ I RVV DD +G Sbjct: 88 RQAGKVLENYRMLDTTLYVTLEPCTM------CAGAMVHSRITRVVYGADDLKTGAAGSV 141 Query: 116 LQWLSQ 121 + L Sbjct: 142 INLLQH 147 >gi|315657779|ref|ZP_07910659.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491576|gb|EFU81187.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 180 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57 +SS + R + A R ++ G P A ++ +GIV G G+ Y HAE+ Sbjct: 29 LSSAEVRALDTAYRLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87 Query: 58 QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL EA +G T TLEPC+ CA I+ I R++ DP Sbjct: 88 VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141 Query: 113 G 113 G Sbjct: 142 G 142 >gi|169824845|ref|YP_001692456.1| putative deaminase [Finegoldia magna ATCC 29328] gi|167831650|dbj|BAG08566.1| putative deaminase [Finegoldia magna ATCC 29328] Length = 155 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 21/158 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +FM A+ +R + V C+IVK+G +I + T HAE++A+ + Sbjct: 5 DEKFMIKAIEQAR--IAFDMDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC C ++ I +VV D G L Sbjct: 63 ATQVIGNFRLDDCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLLS 116 Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151 +G I V +ME E + ++ R EK + Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154 >gi|303243154|ref|ZP_07329591.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2] gi|302589304|gb|EFL59115.1| CMP/dCMP deaminase zinc-binding [Acetivibrio cellulolyticus CD2] Length = 154 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 17/113 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGE 65 FM AL+ ++ T V +IVKDG++I RG P HAE+ A+++A + Sbjct: 7 FMKEALKEAKKAYKKDET--PVGAVIVKDGVIISRGHNEKEMKNDPTLHAEISAIKKACK 64 Query: 66 E-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + YVTLEPC+ CA II+ + R+ + DP G Sbjct: 65 KLNTWRLNDCDLYVTLEPCAM------CAGAIIQARVGRLFIGTPDPKAGAVG 111 >gi|71907824|ref|YP_285411.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB] gi|71847445|gb|AAZ46941.1| tRNA-adenosine deaminase [Dechloromonas aromatica RCB] Length = 146 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 20/132 (15%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V +G ++GRG + G HAE+ AL +A G +VTLEPC+ Sbjct: 19 VGAVVVLNGEIVGRGFNSPIGESDPTAHAEIAALRDAARVLGNYRLPGCELFVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR-----GLQWLSQKGIIVDRMMESEGKI 136 CA I+ I RV+ DP V G G++ L+ + ++ E Sbjct: 79 ------CAGAIMHSRISRVIYGARDPKTGVHGSVVDLFGVERLNHHATVEGGVLAEECST 132 Query: 137 FLHAYLTRQVEK 148 L + + +K Sbjct: 133 LLSGFFASRRKK 144 >gi|124516363|gb|EAY57871.1| putative zinc-binding cytidine/deoxycytidylate deaminase [Leptospirillum rubarum] Length = 164 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 55/118 (46%), Gaps = 16/118 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 + D R+M+ AL ++ + P A L+ +G V+GRG V + HAE+ AL Sbjct: 10 NMDERWMTEALSEAKTAMEKNEI-PIGAILVDANGTVLGRGHNQRVGSTDPTAHAEIVAL 68 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +G + G T YVT+EPC C ++E + VV + +P V+G Sbjct: 69 RTSGLHVKNYRLPGTTLYVTVEPCLM------CFGALLEARVETVVFGIREPRWGVTG 120 >gi|306826204|ref|ZP_07459538.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431480|gb|EFM34462.1| tRNA-specific adenosine deaminase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 155 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAG- 64 FM ALR + + L + C+IVKD +IGRG A HAE+ A+E A Sbjct: 11 FMREALREA--EIALEHDEIPIGCVIVKDREIIGRGHNAREELQRAVMHAEIMAIENANV 68 Query: 65 -EEAR---GATAYVTLEPC 79 EE+ T +VT+EPC Sbjct: 69 SEESWRLLDCTLFVTIEPC 87 >gi|284046137|ref|YP_003396477.1| bifunctional deaminase-reductase domain protein [Conexibacter woesei DSM 14684] gi|283950358|gb|ADB53102.1| bifunctional deaminase-reductase domain protein [Conexibacter woesei DSM 14684] Length = 250 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 48/195 (24%), Positives = 81/195 (41%), Gaps = 14/195 (7%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAG-CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R +R + + A + D I + G G++ G LR Q+DA+LVG GT+ A Sbjct: 27 RAPAERPFVAVNFAATVDGRIALGGRSGAIGDDG--DTEVFRRLRTQADALLVGTGTLAA 84 Query: 203 DD---PELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE--ND 252 + P L +E P +++ +L L+ + + A I+ TE + Sbjct: 85 EQYSRPIRRAELRAAREAIGLAPVPPLVVIARSGRLPLEIPLFQDPD-AHAIVYTEVATE 143 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 P + + I+ + L + GV SLL EGG + ++ LVD + Sbjct: 144 PPAVPARVELQRIDPAAGEPTLTAALRHLRREHGVRSLLCEGGPQLLSGLLHEGLVDELF 203 Query: 313 LYRSQIVIGEGGIPS 327 L + + G GG P+ Sbjct: 204 LTVAPQLAGGGGEPT 218 >gi|238486578|ref|XP_002374527.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357] gi|317144152|ref|XP_001819938.2| cytosine deaminase [Aspergillus oryzae RIB40] gi|220699406|gb|EED55745.1| cytosine deaminase, putative [Aspergillus flavus NRRL3357] Length = 148 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I ++RVV+ + + G ++L +G + + E K + Sbjct: 84 M------CTGACILYKVKRVVIGENKSFM----GGEEYLKNRGKELVVLNNEECKQLMEK 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FMKEKPE 140 >gi|83767797|dbj|BAE57936.1| unnamed protein product [Aspergillus oryzae] Length = 142 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C I ++RVV+ + + G ++L +G + + E K + Sbjct: 84 M------CTGACILYKVKRVVIGENKSFM----GGEEYLKNRGKELVVLNNEECKQLMEK 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FMKEKPE 140 >gi|295702259|ref|YP_003595334.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319] gi|294799918|gb|ADF36984.1| tRNA-specific adenosine deaminase [Bacillus megaterium DSM 319] Length = 156 Score = 40.8 bits (94), Expect = 0.29, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 52/108 (48%), Gaps = 17/108 (15%) Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ R AT YVTLEPC P CA I+ ++RVV DP Sbjct: 53 HAELLAIDEACKKLRTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPK 106 Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151 +G L L + + +V M+E E L + R++ +R Sbjct: 107 GGCAGTLLNLLKFEKFNHQAEVVGGMLEEECGSLLTTFF-RELRQRKK 153 >gi|134098685|ref|YP_001104346.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338] gi|291003628|ref|ZP_06561601.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338] gi|133911308|emb|CAM01421.1| cytosine deaminase [Saccharopolyspora erythraea NRRL 2338] Length = 156 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 47/104 (45%), Gaps = 16/104 (15%) Query: 29 PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 P A L+ +DG V+GRG G P H E A AG + G T TL PC + Sbjct: 31 PIGAALVGRDGEVLGRGHNRRVQDGDPSVHGETSAFRAAGRQRSYAGTTMVTTLSPCWY- 89 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C+ + + GI RVV+ + R G WL++ G+ V Sbjct: 90 -----CSGLVRQFGISRVVIG----EARNFHGGHDWLAEHGVEV 124 >gi|229053868|ref|ZP_04195305.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603] gi|228721478|gb|EEL72995.1| hypothetical protein bcere0026_110 [Bacillus cereus AH603] Length = 164 Score = 40.8 bits (94), Expect = 0.30, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 4 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ I+RVV DP +G + Sbjct: 62 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S N Sbjct: 116 LLTDERFNHQCEVVAGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164 >gi|304437889|ref|ZP_07397836.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369111|gb|EFM22789.1| competence protein ComEB [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 158 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 42/157 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM AL FS + S +P AC++ +D ++G G Y G P Sbjct: 4 SWDEYFMGVAL-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDHEY 55 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A +G Y +L PC+ C + II+ G Sbjct: 56 PWGRTGEFAEQKYPYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 IR V+ D S + + + + R ME+E Sbjct: 110 IREVIYLSDKYAAADSTKASKRMLASANVTCRRMETE 146 >gi|288554625|ref|YP_003426560.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4] gi|288545785|gb|ADC49668.1| CMP/dCMP deaminase zinc-binding protein [Bacillus pseudofirmus OF4] Length = 162 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKDG VI R + HAE+ A++EA + G T YVTLEPC Sbjct: 27 IGAVIVKDGEVIAAAHNRRECDHQAIAHAELLAIKEACDVLGSWRLSGCTLYVTLEPC-- 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKI 136 P CA I++ I VV DP +G + L + + ++ +E+E Sbjct: 85 ----PMCAGAIVQSRIDLVVYGAADPKAGCAGTLMNLLDDPRFNHRAEVISGCLETECGE 140 Query: 137 FLHAYLTRQVEKRS 150 L A+ + KR Sbjct: 141 RLTAFFRKLRAKRK 154 >gi|139473043|ref|YP_001127758.1| deaminase [Streptococcus pyogenes str. Manfredo] gi|134271289|emb|CAM29505.1| putative deaminase [Streptococcus pyogenes str. Manfredo] Length = 157 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EIMAINEANAHEGNWRLLDTTLFVTIEPC 87 >gi|254429334|ref|ZP_05043041.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Alcanivorax sp. DG881] gi|196195503|gb|EDX90462.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Alcanivorax sp. DG881] Length = 150 Score = 40.8 bits (94), Expect = 0.31, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V L+V+D ++G+G + A HAE+ A+ A + R G+T YVTLEPC+ Sbjct: 25 VGALVVRDNRLLGKGYNQPIIASDPSAHAEIVAMRSAAQAERNYRLSGSTLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 C ++ I R+V +P V LQ S + M+ EG + Sbjct: 85 ------CFGAMVHARIGRLVYGASEPRAGVCESQLQLPSVD--FYNHRMDVEGGVL 132 >gi|312279157|gb|ADQ63814.1| Cytidine/deoxycytidylate deaminase family protein, putative [Streptococcus thermophilus ND03] Length = 172 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDKEIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|171777570|ref|ZP_02919258.1| hypothetical protein STRINF_00093 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283179|gb|EDT48603.1| hypothetical protein STRINF_00093 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 168 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVK+G +IGRG A HAE+ A+++A E Sbjct: 12 FMREALKEAQ--KSLAKEEIPIGCVIVKNGDIIGRGHNAREERQKAILHAEIMAIDDANE 69 Query: 66 EARG-----ATAYVTLEPC 79 +T +VT+EPC Sbjct: 70 NEGSWRLLDSTLFVTIEPC 88 >gi|313680072|ref|YP_004057811.1| tRNA(ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] gi|313152787|gb|ADR36638.1| tRNA(Ile)-lysidine synthetase [Oceanithermus profundus DSM 14977] Length = 522 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V++G +G A HAE+ AL A E A GAT YVTLEPC Sbjct: 402 IGAVVVREGEELGASANAVEARVNATAHAELLALRAAQERAGEKVLPGATLYVTLEPC-- 459 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 P C +IE + RVV ++P Sbjct: 460 ----PMCLGALIEARVGRVVWATENP 481 >gi|50312303|ref|XP_456184.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645320|emb|CAG98892.1| KLLA0F24794p [Kluyveromyces lactis] Length = 597 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67 +FM A+ +R + G T T +V L+V ++ G + G HAE AL++ ++ Sbjct: 447 KFMELAIDEAR-NCGETQTAFNVGALLVNGTDILSTGYSRELPGNTHAEQCALDKYFTKS 505 Query: 68 RGATA------YVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSGR-GLQ 117 GA Y T+EPCS + PC II+ I+ V V V +PD+ V Sbjct: 506 EGAKLPDGTIIYTTMEPCSLRLSGNLPCVDRIIQTTGAIKTVFVGVMEPDIFVKNNTSYH 565 Query: 118 WLSQKGI 124 L+Q GI Sbjct: 566 KLAQYGI 572 >gi|71066051|ref|YP_264778.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4] gi|71039036|gb|AAZ19344.1| tRNA-adenosine deaminase [Psychrobacter arcticus 273-4] Length = 195 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 18/125 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62 D ++M+ AL+ ++ G V ++V + +IG+G G C HAE+ AL E Sbjct: 38 DIKWMTEALKLAK--QGAEREEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVALRE 95 Query: 63 AGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A + T YVTLEPC+ C +I + R+V ++P + G + Sbjct: 96 ACAHLKNYRLPLQTTLYVTLEPCTM------CIGALIHARVDRLVYSTNEPRAGMVGSQM 149 Query: 117 QWLSQ 121 +Q Sbjct: 150 NLAAQ 154 >gi|229027869|ref|ZP_04184026.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271] gi|228733445|gb|EEL84270.1| Uncharacterized deaminase yaaJ [Bacillus cereus AH1271] Length = 166 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV +G VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S++N Sbjct: 118 LLTDERFNHQCEVVAGVLEKECGTLLTNFF-RELRKKRKAIKKLEKSKEN 166 >gi|222099239|ref|YP_002533807.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359] gi|221571629|gb|ACM22441.1| Deoxycytidylate deaminase [Thermotoga neapolitana DSM 4359] Length = 199 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ ++ GI+RVV D PD Sbjct: 126 HAEQNALMQAAKFGIAVNGATIYVTHKPCS------ICARLLVNAGIKRVVYEKDYPD 177 >gi|254473540|ref|ZP_05086936.1| cytosine deaminase [Pseudovibrio sp. JE062] gi|211957252|gb|EEA92456.1| cytosine deaminase [Pseudovibrio sp. JE062] Length = 148 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 53/125 (42%), Gaps = 17/125 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI----GRGVTAYGGCPHAEVQALE 61 ++ FM AL +R + C++VKDG V+ R + HAEV A+ Sbjct: 1 MNSTFMDMALNEAR--AAEARGEVPIGCVVVKDGKVLSAAGNRTLELNDPTAHAEVLAIR 58 Query: 62 EAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 EAG++ G YVTLEPC P CA I IRR+ D G+ Sbjct: 59 EAGKQLNSQRLEGCDLYVTLEPC------PMCAAAISFARIRRLYYGAGDAKGGGVDHGV 112 Query: 117 QWLSQ 121 ++ S Sbjct: 113 RFYSS 117 >gi|296276694|ref|ZP_06859201.1| putative tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus MR1] Length = 156 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP S + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSSSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|193636783|ref|XP_001945167.1| PREDICTED: deoxycytidylate deaminase-like [Acyrthosiphon pisum] Length = 220 Score = 40.8 bits (94), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 51/131 (38%), Gaps = 44/131 (33%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM+ A V S +P AC++ D ++G G Y G P Sbjct: 48 SWDDFFMATAFL-----VAKRSKDPVTQVGACIVTPDKKIVGTG---YNGMPIGCNDDNF 99 Query: 54 ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 HAE+ A L + + R T YV L PC+ CA+ II+ Sbjct: 100 PWGKNNPSKLENKYFYVCHAEMNAVLNKNSMDVRNCTIYVALFPCNE------CAKIIIQ 153 Query: 95 CGIRRVVVCVD 105 GI+ VV D Sbjct: 154 SGIKEVVYLSD 164 >gi|283131444|dbj|BAI63444.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 183 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 9 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 67 EMMAINEANAHEGNWRLLDTTMFVTIEPC 95 >gi|303258084|ref|ZP_07344092.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales bacterium 1_1_47] gi|330998703|ref|ZP_08322432.1| cytidine and deoxycytidylate deaminase zinc-binding region [Parasutterella excrementihominis YIT 11859] gi|302859103|gb|EFL82186.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales bacterium 1_1_47] gi|329576442|gb|EGG57954.1| cytidine and deoxycytidylate deaminase zinc-binding region [Parasutterella excrementihominis YIT 11859] Length = 281 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A ++ K+G +IGRG V + HAE+ AL+ A + + T YVTLEPC Sbjct: 148 PVGAVVVDKEGKIIGRGHNLVVAGHDPSGHAEIIALKNASQNLKNYRLDNCTIYVTLEPC 207 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 P C+ II + R+V D Sbjct: 208 ------PMCSGAIIGARLARLVYGAKD 228 >gi|223984558|ref|ZP_03634689.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM 12042] gi|223963486|gb|EEF67867.1| hypothetical protein HOLDEFILI_01984 [Holdemania filiformis DSM 12042] Length = 160 Score = 40.8 bits (94), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 6/55 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 T Y HAE+ A+ + + G T YV+L PC+ CA+ II+ GIR++V Sbjct: 70 TKYAFVVHAELNAILNSTRDLHGCTLYVSLFPCNE------CAKAIIQSGIRKIV 118 >gi|331701735|ref|YP_004398694.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri NRRL B-30929] gi|329129078|gb|AEB73631.1| CMP/dCMP deaminase zinc-binding protein [Lactobacillus buchneri NRRL B-30929] Length = 165 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D+RFM AAL L P + ++V DG ++GRG G HAE+ A++E Sbjct: 5 DSRFMKAAL-IEANKAYLIGEVP-IGAVVVHDGTIVGRGHNLREHLNDGTAHAEILAIQE 62 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A R YVT+EPC CA II I V DP Sbjct: 63 ACRTLRSWRLIDCDLYVTIEPC------LMCAGAIINSRIENVCFGSRDP 106 >gi|71909993|ref|YP_281543.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS5005] gi|60416281|sp|P68999|TADA_STRP1 RecName: Full=tRNA-specific adenosine deaminase gi|71852775|gb|AAZ50798.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS5005] Length = 171 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87 >gi|310826939|ref|YP_003959296.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612] gi|308738673|gb|ADO36333.1| hypothetical protein ELI_1347 [Eubacterium limosum KIST612] Length = 159 Score = 40.8 bits (94), Expect = 0.34, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 57/142 (40%), Gaps = 46/142 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM AL ++ S +P AC++ D ++ G Y G P Sbjct: 8 SWDEYFMGIALLAAK-----RSKDPGTQVGACIVSPDNKILTMG---YNGMPTGCHDDNM 59 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE A L G +GAT Y TL PC+ CA+ II+ Sbjct: 60 PWEREGDPLETKYLYVCHAEFNAILNNGGRSLKGATLYATLFPCNE------CAKAIIQS 113 Query: 96 GIRRVVVCVD---DPDVRVSGR 114 GI++V+ D D D ++ + Sbjct: 114 GIQKVIYMEDKYADTDAVIASK 135 >gi|146416895|ref|XP_001484417.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 150 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 52/125 (41%), Gaps = 18/125 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA----RGATAYVTLEPCS 80 P LI +DG V+GRG H E+ LE AG + T Y TL PCS Sbjct: 26 PIGGALISEDGTVLGRGHNLRFQKDSATLHGEISTLENAGRLKGSVYKNCTMYTTLSPCS 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C+ I G++RVVV ++ + W+ + GI V + E K + Sbjct: 86 M------CSGACIMYGVKRVVVGENETFMGAE----DWIRKLGIEVVNLNNQECKDLMAK 135 Query: 141 YLTRQ 145 ++ + Sbjct: 136 FIKER 140 >gi|223983492|ref|ZP_03633678.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM 12042] gi|223964664|gb|EEF68990.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM 12042] Length = 181 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 17/113 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D FM A++ +R L + ++V DG ++ RG HAE+ A Sbjct: 7 SKNDEYFMRQAIKEARKAEALDEV--PIGAVLVHDGKILARGHNLREKKQSSLAHAEIVA 64 Query: 60 LEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 +E+A + YVTLEPC P CA I++ I +VV DP Sbjct: 65 IEKACRKTGSWRLEDCVLYVTLEPC------PMCAGAILQSRIAKVVYGAADP 111 >gi|55823732|ref|YP_142173.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus thermophilus CNRZ1066] gi|55739717|gb|AAV63358.1| cytidine/deoxycytidylate deaminase family protein, putative [Streptococcus thermophilus CNRZ1066] Length = 172 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|322412766|gb|EFY03674.1| putative cytidine/deoxycytidylate deaminase family protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 175 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG A HAE+ A+ EA Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTMFVTIEPC 87 >gi|256545480|ref|ZP_05472842.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC 51170] gi|256398876|gb|EEU12491.1| tRNA-specific adenosine deaminase [Anaerococcus vaginalis ATCC 51170] Length = 157 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRGVT-AYGG---CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + C+IVKD +I R Y G HAE+ A+++A + T YVT+EPCS Sbjct: 25 IGCVIVKDEKIIARSHNYTYKGKSALKHAEILAIDKASKYVGDFRLEDCTMYVTMEPCS- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 CA II I+R+V+ + D Sbjct: 84 -----MCAGAIINSRIKRLVIGLAD 103 >gi|289208495|ref|YP_003460561.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp. K90mix] gi|288944126|gb|ADC71825.1| CMP/dCMP deaminase zinc-binding protein [Thioalkalivibrio sp. K90mix] Length = 175 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 39/94 (41%), Gaps = 15/94 (15%) Query: 33 CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPP 87 CL V IG + HAE++ L AG+ G T YVTLEPCS Sbjct: 60 CLAVAHNAPIGE----HDATAHAEIRVLRRAGKRCSNYRLTGTTLYVTLEPCSM------ 109 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA +I + R+V DP +G + L Sbjct: 110 CAGAMIHARVERLVFAASDPRTGAAGGAIDLLHH 143 >gi|331028070|ref|YP_004421784.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1] gi|301341533|gb|ADK73417.1| deoxycytidylate deaminase [Roseobacter phage RDJL Phi 1] Length = 154 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 6/49 (12%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE+ A+ A G T Y T PCSH CA II+ GI+RVV Sbjct: 73 HAELNAILNASRSVVGWTLYATTHPCSH------CAGAIIQAGIKRVVA 115 >gi|312196151|ref|YP_004016212.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] gi|311227487|gb|ADP80342.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] Length = 250 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 41/185 (22%), Positives = 85/185 (45%), Gaps = 19/185 (10%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD----- 204 +H+ + D + G S + G + H LR +D +LVG GT A++ Sbjct: 32 AHVRANFVSAADGAAEVGGR-SAALGGPGDRQIFHTLRWLADVVLVGAGTARAENYGPAI 90 Query: 205 ---PELTCRLN-GLQEHSPMRIILDPHFKLSLD--SKIIKTALLAPVIIVTENDDPVLAL 258 P R+ GL P+ ++ L++D +++ A+ +++T PV + Sbjct: 91 VPPPRQEARIAAGLAPVPPIAVV---SGSLAIDPGARLFGAAVRP--LLLTAASAPVERV 145 Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + ++ +++ C + +L+ +L L GRG++ +L EGG + + L+D + L + Sbjct: 146 SALREVADVVVCGDEQVELELVLGALAGRGLSRVLTEGGPMLHAQLAGAGLLDELCLTVA 205 Query: 317 QIVIG 321 ++ G Sbjct: 206 PLLAG 210 >gi|330999408|ref|ZP_08323122.1| ComE operon protein 2 family protein [Parasutterella excrementihominis YIT 11859] gi|329574834|gb|EGG56393.1| ComE operon protein 2 family protein [Parasutterella excrementihominis YIT 11859] Length = 138 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%) Query: 30 SVACLIVKDGIVIGRGV----TAYGGC---------------PHAEVQA---LEEAGEEA 67 V C+IVK+ +I G T Y C HAE+ A L + G + Sbjct: 27 KVGCIIVKNHSIISFGWNGMPTGYDNCCEYEVDGKLVTRPEVQHAELNAIAKLAQNGYSS 86 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GA ++T PC H C+ I +CGI V + D G+Q+L + GI V+ Sbjct: 87 NGAKIFITHSPCIH------CSLLIQKCGINEVYYHENYRD----DAGIQFLKKAGIKVE 136 Query: 128 RM 129 ++ Sbjct: 137 QL 138 >gi|282918346|ref|ZP_06326083.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427] gi|282317480|gb|EFB47852.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C427] Length = 156 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARANNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEDCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|50913560|ref|YP_059532.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10394] gi|71902843|ref|YP_279646.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS6180] gi|94987813|ref|YP_595914.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS9429] gi|94989691|ref|YP_597791.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10270] gi|94991689|ref|YP_599788.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS2096] gi|94993570|ref|YP_601668.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10750] gi|306828137|ref|ZP_07461400.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC 10782] gi|50902634|gb|AAT86349.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10394] gi|71801938|gb|AAX71291.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS6180] gi|94541321|gb|ABF31370.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS9429] gi|94543199|gb|ABF33247.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10270] gi|94545197|gb|ABF35244.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS2096] gi|94547078|gb|ABF37124.1| tRNA-specific adenosine deaminase [Streptococcus pyogenes MGAS10750] gi|304429674|gb|EFM32720.1| cytidine/deoxycytidylate deaminase [Streptococcus pyogenes ATCC 10782] Length = 179 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 9 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95 >gi|309390267|gb|ADO78147.1| tRNA-adenosine deaminase [Halanaerobium praevalens DSM 2228] Length = 154 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D ++M AL +R + ++V + V+GRG HAE+ AL E Sbjct: 4 DIKYMKMALAEAR--KAYQRAEVPIGAVVVCNDQVVGRGFNLREQTQDPTTHAEIIALRE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A YVTLEPC P CA I++ I+R+V DP Sbjct: 62 AASNKVSWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYGASDP 105 >gi|166031359|ref|ZP_02234188.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC 27755] gi|166028764|gb|EDR47521.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC 27755] Length = 157 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A++ ++ + + C+IV +I RG HAE+QA+ + Sbjct: 4 DEKYMREAIKQAKKAYAIGEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELQAIRK 61 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC C+ I++ + RVVV +P +G L Sbjct: 62 ASKKMEDWRLEECTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGCAGSILN 115 Query: 118 WLS 120 L Sbjct: 116 LLQ 118 >gi|229165011|ref|ZP_04292809.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621] gi|228618463|gb|EEK75490.1| hypothetical protein bcere0007_110 [Bacillus cereus AH621] Length = 164 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 4 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ I+RV+ DP +G + Sbjct: 62 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVIYGASDPKGGCAGTLMN 115 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S N Sbjct: 116 LLTDERFNHQCEVVPGVLEEECGTLLTIFF-RELRKKRKEVKKLEKSNGN 164 >gi|311993209|ref|YP_004010075.1| dCMP deaminase [Enterobacteria phage CC31] gi|284178047|gb|ADB81713.1| dCMP deaminase [Enterobacteria phage CC31] Length = 188 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 96 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 142 >gi|253795669|ref|YP_003038765.1| putative riboflavin biosynthesis protein RibD [Candidatus Hodgkinia cicadicola Dsem] gi|253739977|gb|ACT34312.1| putative riboflavin biosynthesis protein RibD [Candidatus Hodgkinia cicadicola Dsem] Length = 305 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 V + N V CL ++ TA GG PHAE A + + +V+L PCS Sbjct: 15 VATAAVNQRVVCLWRVARWLLASS-TASGGRPHAETLCSSTACRD-DATSVFVSLAPCSG 72 Query: 82 YGRSPPC 88 +G++PPC Sbjct: 73 FGKTPPC 79 >gi|251783385|ref|YP_002997690.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392017|dbj|BAH82476.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 175 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG A HAE+ A+ EA Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTMFVTIEPC 87 >gi|220932912|ref|YP_002509820.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168] gi|219994222|gb|ACL70825.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168] Length = 159 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL +R + L + ++V +G ++G G T HAE+ A+ + Sbjct: 4 DEDFMELALEEARKALALEEV--PIGAVVVCNGEIVGSGHNLKETENDPTAHAEIVAIRD 61 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A + YVT+EPC P CA I++ ++RVV DP V+G Sbjct: 62 AARKLSSWRLNECQLYVTIEPC------PMCAGAIMQARLQRVVYGAVDPKAGVAG 111 >gi|157363614|ref|YP_001470381.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO] gi|157314218|gb|ABV33317.1| CMP/dCMP deaminase zinc-binding [Thermotoga lettingae TMO] Length = 186 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ ++ GI RVV + PD Sbjct: 106 HAEQNALMQAAKFGISTNGATMYVTTKPCS------VCARLLVNAGITRVVYVQEYPD 157 >gi|29469223|gb|AAO65336.1| putative bifunctional enzyme deaminase/reductase [Streptomyces murayamaensis] Length = 226 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 17/190 (8%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L AVS D + + ++ ++V RA +DAILVG T+ D+P L Sbjct: 4 RPYVVLSAAVSLDGRLDDTSRDRLVLSNRRDLDRVDDERAAADAILVGATTLRRDNPRLL 63 Query: 209 CRLN---------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 G+ EH P+++ + +++ V V D L A Sbjct: 64 VASADRRARRVALGMPEH-PLKVTVTGSAEVNTSYAFWHCGGEKLVFTV----DGALLRA 118 Query: 260 FRKKN--INIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 R +++ D LL L RGV LLVEGG V + L D + L + Sbjct: 119 RRTVGDLADVVSTGPALDWHLLLDELGRRGVERLLVEGGGTVHTQLLAQDLADELHLVVA 178 Query: 317 QIVIGEGGIP 326 +++GE G P Sbjct: 179 PLLVGEAGAP 188 >gi|21909689|ref|NP_663957.1| putative cytidine/deoxycytidylate deaminase family protein [Streptococcus pyogenes MGAS315] gi|56807966|ref|ZP_00365780.1| COG0590: Cytosine/adenosine deaminases [Streptococcus pyogenes M49 591] gi|73921034|sp|Q8K8Q9|TADA_STRP3 RecName: Full=tRNA-specific adenosine deaminase gi|73921083|sp|Q5XE14|TADA_STRP6 RecName: Full=tRNA-specific adenosine deaminase gi|21903872|gb|AAM78760.1| putative cytidine/deoxycytidylate deaminase family protein [Streptococcus pyogenes MGAS315] Length = 171 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87 >gi|331005351|ref|ZP_08328736.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium IMCC1989] gi|330420848|gb|EGG95129.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium IMCC1989] Length = 158 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 21/136 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++VKD +IG G ++ HAE+QAL A AT YVTLEPC Sbjct: 28 VGAVVVKDNEIIGSGFNQPISLCDPTAHAEIQALRNAANHIGNYRLNSATLYVTLEPCGM 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEGKI 136 CA I+ I R+V +P V Q +L+ K + + E Sbjct: 88 ------CAGAIVHSRIARLVYGATEPKAGVIVSQTQQLDKAYLNHKVLYQGGVCAEECSE 141 Query: 137 FLHAYLT-RQVEKRSH 151 + + + R+ EK++H Sbjct: 142 IISVFFSRRRAEKKAH 157 >gi|320586926|gb|EFW99589.1| cytosine deaminase [Grosmannia clavigera kw1407] Length = 170 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 55/124 (44%), Gaps = 18/124 (14%) Query: 32 ACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAGEEA----RGATAYVTLEPCSHYG 83 A L+ DG ++G+G G P H E L G + +G+T Y TL PC Sbjct: 35 AALVSADGTLMGKGRNQRVQLGSPIHHGETSTLYNTGRLSASAYKGSTMYTTLSPCDM-- 92 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143 C I GI+RVV+ + R G +L Q+GI V + SE + + A++ Sbjct: 93 ----CTGACILYGIKRVVIGEN----RTFLGGEAYLKQRGIDVVVLDNSECRELMEAFIA 144 Query: 144 RQVE 147 + E Sbjct: 145 KSPE 148 >gi|218895158|ref|YP_002443569.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus G9842] gi|218541226|gb|ACK93620.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus G9842] Length = 166 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEEMQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S N Sbjct: 118 LLTDERFNHQCEVVTGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNGN 166 >gi|319775162|ref|YP_004137650.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047] gi|329122920|ref|ZP_08251491.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC 11116] gi|317449753|emb|CBY85960.1| tRNA-specific adenosine deaminase [Haemophilus influenzae F3047] gi|327471851|gb|EGF17291.1| tRNA-specific adenosine deaminase [Haemophilus aegyptius ATCC 11116] Length = 173 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 47/112 (41%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S FD + M AL + L P A L+ G +IG G + HAE+ A Sbjct: 8 SEFDEKMMRYALELADKAEALGEI-PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIA 66 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + + +T YVTLEPC+ CA I+ IRR+V D Sbjct: 67 LRNGAKNIQNYRLLNSTLYVTLEPCTM------CAGAILHSRIRRLVFGASD 112 >gi|242796726|ref|XP_002482861.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces stipitatus ATCC 10500] gi|218719449|gb|EED18869.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces stipitatus ATCC 10500] Length = 341 Score = 40.4 bits (93), Expect = 0.38, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 35/185 (18%) Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDDP-- 254 DD E+ R + H P II+DP + SKII+ AP +I+ ++ P Sbjct: 146 DDEEMIIRKRQEKLHQPRPIIIDPKARWVPQETSKIIELVRQGRGKAPFVIIAKSTSPPQ 205 Query: 255 ------------VLALAFRKKNINIIYCDCR---DLKKLLTILVGR-GVTSLLVEGGAAV 298 +AL +IN + D +L +L + + S+++EGG ++ Sbjct: 206 HGRDLLEKYGGKFIALDTVASDINDENGETHRHFDWHDILHVLATKENIRSIMIEGGGSI 265 Query: 299 AHSFIN----SRLVDSIILYRSQIVIGEGG-IPSPL----EEGYL--EKNFMCVRRDYFG 347 +S ++ S L+DS+I+ + +G+GG + SP E GY V+ FG Sbjct: 266 INSLLSEQKFSGLIDSVIVTIAPTWLGQGGVVVSPKRRVDEHGYAIPASRLTDVKWYPFG 325 Query: 348 SDVCL 352 DV L Sbjct: 326 EDVVL 330 >gi|227873068|ref|ZP_03991362.1| dCMP deaminase [Oribacterium sinus F0268] gi|227841049|gb|EEJ51385.1| dCMP deaminase [Oribacterium sinus F0268] Length = 173 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 11/68 (16%) Query: 54 HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV----VCVDDPD 108 HAE+ A L G GAT YVTL PC+ CA+ II+ GI+ +V + D P Sbjct: 91 HAELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIKTLVYWEDIYADTPA 144 Query: 109 VRVSGRGL 116 V+ S R L Sbjct: 145 VKASKRML 152 >gi|312173235|emb|CBX81490.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC BAA-2158] Length = 166 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M ALR +R W G V ++V D VIG G + + HAE+ AL Sbjct: 6 DEYWMRHALRLARRAWDEGEVP----VGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 61 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA +I I R+V D +G Sbjct: 62 RQGGKMIENYRLLDTTLYVTLEPCVM------CAGAMIHSRIGRLVYGARDAKTGAAGSL 115 Query: 116 LQWLSQKGI 124 L L G+ Sbjct: 116 LDVLGHPGM 124 >gi|322434989|ref|YP_004217201.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp. MP5ACTX9] gi|321162716|gb|ADW68421.1| CMP/dCMP deaminase zinc-binding protein [Acidobacterium sp. MP5ACTX9] Length = 292 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 21/143 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V + +I RG + HAE+ AL EAG Y TLEPC+ Sbjct: 26 VGAVLVLNNEIIARGRNRVILDSDPTAHAEIVALREAGRILGNYRLENCDLYTTLEPCAM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK------GIIVDRMMESEGK 135 CA I+ IRR++ DP G L ++ + V + E G+ Sbjct: 86 ------CAGAILHARIRRLIYAAADPKAGACGSALDVMNHPRLNHRMEVAVGLLAEECGE 139 Query: 136 IFLHAYLTRQVEKRSHITLKIAV 158 + + TR+++ + + I + Sbjct: 140 MLTSFFRTRRLKNKENAASAIGI 162 >gi|111018655|ref|YP_701627.1| hypothetical protein RHA1_ro01656 [Rhodococcus jostii RHA1] gi|110818185|gb|ABG93469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus jostii RHA1] Length = 245 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 25/193 (12%) Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLAD--------DPELTCRLN--GLQEHSPMRI 222 P++ + + +RA +D +LVG GTV A+ + + RL GL P+ + Sbjct: 47 PLSDPVDHQLLRAMRAYADVVLVGAGTVRAETYGPVQLTEEQARYRLERWGLDAPPPIAV 106 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRDLKKLLTI 281 + + DS + + P+++ T A +I + D ++ L+ Sbjct: 107 VTR-TGNVPPDSPLFAGGV-RPIVVTTRRVAETRGAALGESADIVVAGDDSVEMPALMAA 164 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------------PL 329 L RG +L EGG + H + LVD + L + + G +P+ L Sbjct: 165 LRDRGFGRILCEGGPTLLHDLVTHDLVDEMCLTLAPRLAGPQTLPASSGPTVQAPRTLSL 224 Query: 330 EEGYLEKNFMCVR 342 E + +F+ +R Sbjct: 225 EHALINDDFLYLR 237 >gi|55821816|ref|YP_140258.1| cytidine/deoxycytidylate deaminase family protein [Streptococcus thermophilus LMG 18311] gi|55737801|gb|AAV61443.1| cytidine/deoxycytidylate deaminase family protein, putative [Streptococcus thermophilus LMG 18311] Length = 172 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|330466554|ref|YP_004404297.1| hypothetical protein VAB18032_12915 [Verrucosispora maris AB-18-032] gi|328809525|gb|AEB43697.1| hypothetical protein VAB18032_12915 [Verrucosispora maris AB-18-032] Length = 248 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 81/199 (40%), Gaps = 24/199 (12%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---------L 201 + + S D + + G S ++G K LLR DA+LV GT+ L Sbjct: 35 QLRMNFVTSVDGAVSLDGY-SAGLSGEPDKRVFRLLRMVCDALLVAAGTLRHEGYRALRL 93 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPVLALAF 260 + R +GL E+ + ++ + SLD + A APV + D A Sbjct: 94 DEQRRAWRRRHGLAEYPTLVVVSN-----SLDLDPTQAAFADAPVRPMVLTRDGAPAAPG 148 Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++++C D DL L L RG +L EGG + + + LVD + L + + Sbjct: 149 LAAVADLVHCGTDEVDLAVGLAELRRRGFDQVLCEGGPHLFGALTAADLVDEVCLSVAPL 208 Query: 319 VIGEG------GIPSPLEE 331 + G G G PSP + Sbjct: 209 LAGAGAGRITAGTPSPARQ 227 >gi|218245509|ref|YP_002370880.1| bifunctional deaminase-reductase domain-containing protein [Cyanothece sp. PCC 8801] gi|218165987|gb|ACK64724.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8801] Length = 176 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 20/50 (40%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D+KKL++ L +G +L ++GG V SF+ L+D II+ R I++G+G Sbjct: 94 DIKKLISQLNQKGYKNLYIDGGQ-VIQSFLQEDLIDEIIITRVPIILGKG 142 >gi|281357825|ref|ZP_06244311.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548] gi|281315772|gb|EFA99799.1| dCMP deaminase [Victivallis vadensis ATCC BAA-548] Length = 159 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 65/167 (38%), Gaps = 49/167 (29%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRGVTAY--------- 49 P S+D FM A HV T +N S VA ++V+D +I G Sbjct: 7 PRPSWDQYFMDIA------HVAATRSNCSRRQVAAVLVRDCRIISTGYNGTPRGVRNCSD 60 Query: 50 GGCP------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPC 88 GGCP HAE A+ +A G +GAT Y T PC C Sbjct: 61 GGCPRCNSDAPSGTNLHQCVCSHAEENAIVQAAYHGIAVKGATLYTTFSPCL------LC 114 Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 A+ II GI VV + + L + G+IV R +E E K Sbjct: 115 AKMIINAGIVEVVY---HQHYSIDDVSMGLLHEAGVIV-RPLEKEMK 157 >gi|90021123|ref|YP_526950.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40] gi|89950723|gb|ABD80738.1| tRNA-adenosine deaminase [Saccharophagus degradans 2-40] Length = 176 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 17/116 (14%) Query: 31 VACLIVKDGIVIGRGV-TAYGGC---PHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+D ++G G T GC HAE+ AL +A + AT YVT+EPC+ Sbjct: 30 VGAVVVRDNKILGSGFNTPISGCDPTAHAEITALRQAAKNEHNYRLPDATLYVTIEPCTM 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 C I+ + RVV +P V W Q+G + +E G + Sbjct: 90 ------CLGAIMHARVARVVYGATEPKAGVIYSNPVW--QQGGFFNHQVEWCGGVL 137 >gi|293394841|ref|ZP_06639131.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582] gi|291422592|gb|EFE95831.1| tRNA-specific adenosine deaminase [Serratia odorifera DSM 4582] Length = 179 Score = 40.4 bits (93), Expect = 0.39, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V L+V D VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 39 VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 98 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V D +G + L G+ Sbjct: 99 ------CAGAMVHSRIRRLVYGASDEKTGAAGSLVDILRHPGM 135 >gi|49482788|ref|YP_040012.1| deaminase [Staphylococcus aureus subsp. aureus MRSA252] gi|257424672|ref|ZP_05601099.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257427340|ref|ZP_05603739.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus 65-1322] gi|257429977|ref|ZP_05606361.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257432678|ref|ZP_05609038.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257435582|ref|ZP_05611630.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876] gi|282903146|ref|ZP_06311037.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus C160] gi|282904936|ref|ZP_06312794.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus Btn1260] gi|282907886|ref|ZP_06315721.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910199|ref|ZP_06318003.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus WBG10049] gi|282913391|ref|ZP_06321180.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus M899] gi|282923308|ref|ZP_06330988.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101] gi|283957356|ref|ZP_06374809.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|293500437|ref|ZP_06666288.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus 58-424] gi|293509382|ref|ZP_06668093.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809] gi|293523969|ref|ZP_06670656.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus M1015] gi|295427097|ref|ZP_06819733.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590551|ref|ZP_06949190.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus MN8] gi|49240917|emb|CAG39584.1| putative deaminase [Staphylococcus aureus subsp. aureus MRSA252] gi|257272242|gb|EEV04365.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 55/2053] gi|257275533|gb|EEV07006.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus 65-1322] gi|257279174|gb|EEV09775.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257282093|gb|EEV12228.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257284773|gb|EEV14892.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M876] gi|282314176|gb|EFB44566.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus C101] gi|282322423|gb|EFB52745.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus M899] gi|282325591|gb|EFB55899.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus WBG10049] gi|282328270|gb|EFB58548.1| ComE operon protein 2 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331761|gb|EFB61272.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596101|gb|EFC01062.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus C160] gi|283790807|gb|EFC29622.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus A017934/97] gi|290920932|gb|EFD97993.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus aureus subsp. aureus M1015] gi|291095442|gb|EFE25703.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus 58-424] gi|291467479|gb|EFF09994.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus M809] gi|295128885|gb|EFG58515.1| tRNA-adenosine deaminase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576850|gb|EFH95565.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus MN8] gi|312439022|gb|ADQ78093.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus TCH60] gi|315193922|gb|EFU24316.1| putative deaminase [Staphylococcus aureus subsp. aureus CGS00] Length = 156 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I KD VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAAQLGEV--PIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEDCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|262276493|ref|ZP_06054302.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP 101886] gi|262220301|gb|EEY71617.1| tRNA-specific adenosine-34 deaminase [Grimontia hollisae CIP 101886] Length = 174 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 17/128 (13%) Query: 43 GRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGI 97 R + + HAE+ AL +AG++ + A YVTLEPC P CA ++ I Sbjct: 45 NRLIGQHDATAHAEMMALRQAGKKLQNYRLLEAVLYVTLEPC------PMCASAMVHSRI 98 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL-TRQVEKRSH 151 +VV D +G + LS G+ ++E E + L A+ R+ EK++ Sbjct: 99 GKVVFGAPDYKTGAAGSVMNLLSYDGVNHHVQFQGGVLEEECREQLQAFFRRRRQEKKAE 158 Query: 152 ITLKIAVS 159 + AV Sbjct: 159 KEARKAVQ 166 >gi|322515941|ref|ZP_08068882.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis ATCC 49124] gi|322125615|gb|EFX96945.1| tRNA-specific adenosine deaminase [Streptococcus vestibularis ATCC 49124] Length = 172 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|292489080|ref|YP_003531967.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430] gi|291554514|emb|CBA22074.1| tRNA-specific adenosine deaminase [Erwinia amylovora CFBP1430] Length = 159 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M ALR +R W G V ++V D VIG G + + HAE+ AL Sbjct: 6 DEYWMRHALRLARRAWDEGEVP----VGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 61 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA +I I R+V D +G Sbjct: 62 RQGGKMIENYRLLDTTLYVTLEPCV------MCAGAMIHSRIGRLVYGARDAKTGAAGSL 115 Query: 116 LQWLSQKGI 124 L L G+ Sbjct: 116 LDVLGHPGM 124 >gi|209558752|ref|YP_002285224.1| Cytosine deaminase [Streptococcus pyogenes NZ131] gi|209539953|gb|ACI60529.1| Cytosine deaminase [Streptococcus pyogenes NZ131] Length = 171 Score = 40.4 bits (93), Expect = 0.40, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87 >gi|253988801|ref|YP_003040157.1| tRNA -specific adenosine deaminase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780251|emb|CAQ83412.1| similar to ecoli yfhc protein, tRNA-specific adenosine deaminase [Photorhabdus asymbiotica] Length = 169 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D +I G + A+ HAEV AL + GE+ + T YVTLEPC+ Sbjct: 29 VGAVLVADNEIIAEGWNQSIIAHDPSAHAEVIALRKGGEQLQNYRLLNTTLYVTLEPCA- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA +I I+R+V D +G Sbjct: 88 -----MCAGAMIHSRIQRLVYGASDMKTGAAG 114 >gi|325288211|ref|YP_004264392.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271] gi|324963612|gb|ADY54391.1| tRNA-adenosine deaminase [Syntrophobotulus glycolicus DSM 8271] Length = 148 Score = 40.4 bits (93), Expect = 0.41, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 61/147 (41%), Gaps = 22/147 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGE 65 +M AL+ + L + +IVK+G ++ T HAE+ A++ A + Sbjct: 6 WMRLALKQAE--TALEKDEVPIGAVIVKNGEILALAHNEKETNQDPTAHAEMLAIKRAAQ 63 Query: 66 EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL---- 116 + GAT YVTLEPC P CA II+ I +V DD G L Sbjct: 64 KLGAWRLSGATLYVTLEPC------PMCAGAIIQSRIETLVYGADDSKGGAVGSVLNVLQ 117 Query: 117 -QWLSQKGIIVDRMMESEGKIFLHAYL 142 Q + K I+ ++E E L + Sbjct: 118 HQLWNHKVEIITGILEEESARLLKGFF 144 >gi|326790135|ref|YP_004307956.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum DSM 5427] gi|326540899|gb|ADZ82758.1| CMP/dCMP deaminase zinc-binding protein [Clostridium lentocellum DSM 5427] Length = 175 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 49/123 (39%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL + T + +IV VIGRG T HAEV A+ E Sbjct: 4 DIEFMKQALIEA--EKAFTLDEAPIGAVIVYKEQVIGRGHNRRNTDKNALAHAEVMAINE 61 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + + T Y+TLEPC P C+ I++ + RVV P G L Sbjct: 62 ACKHIKDWRLEECTIYITLEPC------PMCSGAIVQARLPRVVFGARSPKAGFGGSVLN 115 Query: 118 WLS 120 L Sbjct: 116 ILQ 118 >gi|229067785|ref|ZP_04201104.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185] gi|228715338|gb|EEL67195.1| hypothetical protein bcere0025_110 [Bacillus cereus F65185] Length = 166 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L ++ +KR I Sbjct: 142 LLTSFFRELRKKRKAI 157 >gi|227824625|ref|ZP_03989457.1| CMP/dCMP deaminase [Acidaminococcus sp. D21] gi|226905124|gb|EEH91042.1| CMP/dCMP deaminase [Acidaminococcus sp. D21] Length = 153 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++V+DG VI R A+ HAE+ + EA E+ R +T YVT+EPC Sbjct: 30 VGAILVQDGRVIARNHNRRERAHDATAHAEILVIREACEKLRRWRLADSTLYVTMEPC-- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 P CA I I RVV D Sbjct: 88 ----PMCAGAIYNARIGRVVFGASD 108 >gi|310779654|ref|YP_003967987.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM 2926] gi|309748977|gb|ADO83639.1| CMP/dCMP deaminase zinc-binding protein [Ilyobacter polytropus DSM 2926] Length = 165 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 65/157 (41%), Gaps = 37/157 (23%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP-------- 53 +D FM AL ++ S +PS AC++ K+ ++G G + GC Sbjct: 11 WDEYFMGIALLSAK-----RSKDPSTQVGACIVNKENKIVGVGYNGFPKGCSDDNFPWDR 65 Query: 54 -------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE A+ + ++ T YV L PC CA+ II+ GI+ V Sbjct: 66 EGEFLETKYPFVMHAEQNAILNSIKKLSDCTIYVGLFPCHE------CAKSIIQSGIKEV 119 Query: 101 VVCVDDPDVRVSGRGLQWL-SQKGIIVDRMMESEGKI 136 V D D S + + + G++ ++ SE KI Sbjct: 120 VFLSDKYDGTDSNKASKMMFDSSGVVYRKLNLSEIKI 156 >gi|283131328|dbj|BAI63333.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 183 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 9 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 67 EMMAINEANAHEGNWRLLDTTLFVTIEPC 95 >gi|116628523|ref|YP_821142.1| cytidine/deoxycytidylate deaminase family protein, putative [Streptococcus thermophilus LMD-9] gi|116101800|gb|ABJ66946.1| tRNA-adenosine deaminase [Streptococcus thermophilus LMD-9] Length = 172 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|30260212|ref|NP_842589.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Bacillus anthracis str. Ames] gi|47525273|ref|YP_016622.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183056|ref|YP_026308.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Bacillus anthracis str. Sterne] gi|49481561|ref|YP_034377.1| cytidine/deoxycytidylate deaminase family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|65317484|ref|ZP_00390443.1| COG0590: Cytosine/adenosine deaminases [Bacillus anthracis str. A2012] gi|118475795|ref|YP_892946.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam] gi|165873229|ref|ZP_02217840.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0488] gi|167635069|ref|ZP_02393386.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0442] gi|167642053|ref|ZP_02400280.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0193] gi|170688894|ref|ZP_02880096.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0465] gi|170707544|ref|ZP_02897997.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0389] gi|177655687|ref|ZP_02937012.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0174] gi|190569336|ref|ZP_03022228.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis Tsiankovskii-I] gi|196036359|ref|ZP_03103756.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus W] gi|196041943|ref|ZP_03109230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus NVH0597-99] gi|196047685|ref|ZP_03114889.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus 03BB108] gi|218901223|ref|YP_002449057.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH820] gi|225862074|ref|YP_002747452.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus 03BB102] gi|227812695|ref|YP_002812704.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. CDC 684] gi|228912760|ref|ZP_04076409.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228925275|ref|ZP_04088373.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931524|ref|ZP_04094432.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228943828|ref|ZP_04106215.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229089154|ref|ZP_04220437.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42] gi|229119684|ref|ZP_04248947.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201] gi|229182416|ref|ZP_04309669.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1] gi|229604522|ref|YP_002864673.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0248] gi|254686610|ref|ZP_05150469.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. CNEVA-9066] gi|254724163|ref|ZP_05185948.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A1055] gi|254737002|ref|ZP_05194707.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Western North America USA6153] gi|254744200|ref|ZP_05201881.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Kruger B] gi|254751191|ref|ZP_05203230.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Vollum] gi|254761661|ref|ZP_05213679.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Australia 94] gi|30253533|gb|AAP24075.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Ames] gi|47500421|gb|AAT29097.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49176983|gb|AAT52359.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. Sterne] gi|49333117|gb|AAT63763.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415020|gb|ABK83439.1| tRNA-adenosine deaminase [Bacillus thuringiensis str. Al Hakam] gi|164711027|gb|EDR16593.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0488] gi|167509987|gb|EDR85406.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0193] gi|167529543|gb|EDR92293.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0442] gi|170127540|gb|EDS96414.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0389] gi|170667118|gb|EDT17879.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0465] gi|172080027|gb|EDT65127.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0174] gi|190559558|gb|EDV13551.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis Tsiankovskii-I] gi|195990989|gb|EDX54960.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus W] gi|196021470|gb|EDX60173.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus 03BB108] gi|196027198|gb|EDX65818.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus NVH0597-99] gi|218537868|gb|ACK90266.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH820] gi|225787894|gb|ACO28111.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus 03BB102] gi|227005774|gb|ACP15517.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. CDC 684] gi|228601062|gb|EEK58629.1| Uncharacterized deaminase yaaJ [Bacillus cereus BGSC 6E1] gi|228663775|gb|EEL19352.1| Uncharacterized deaminase yaaJ [Bacillus cereus 95/8201] gi|228694177|gb|EEL47857.1| Uncharacterized deaminase yaaJ [Bacillus cereus Rock3-42] gi|228815852|gb|EEM62086.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828142|gb|EEM73868.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228834389|gb|EEM79928.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228846887|gb|EEM91890.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229268930|gb|ACQ50567.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus anthracis str. A0248] Length = 166 Score = 40.4 bits (93), Expect = 0.42, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV +G VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGAGDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S +N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166 >gi|303257995|ref|ZP_07344004.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales bacterium 1_1_47] gi|302859338|gb|EFL82420.1| cytidine/deoxycytidylate deaminase family protein [Burkholderiales bacterium 1_1_47] Length = 138 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 32/122 (26%) Query: 30 SVACLIVKDGIVIGRGV----TAYGGC---------------PHAEVQA---LEEAGEEA 67 V C+IVK+ +I G T Y C HAE+ A L + G + Sbjct: 27 KVGCVIVKNHSIISFGWNGMPTGYDNCCEYEVDGKLVTRPEVQHAELNAIAKLAQNGYSS 86 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GA ++T PC H C+ I +CGI V + D G+Q+L + GI V+ Sbjct: 87 NGAKIFITHSPCIH------CSLLIQKCGINEVYYHENYRD----DAGIQFLKKAGIKVE 136 Query: 128 RM 129 ++ Sbjct: 137 QL 138 >gi|78043781|ref|YP_361468.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995896|gb|ABB14795.1| cytidine/deoxycytidylate deaminase family protein [Carboxydothermus hydrogenoformans Z-2901] Length = 153 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 17/107 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +FM+ AL+ + L P V ++V +G +IGRG T HAE+ AL+EA Sbjct: 5 KFMAEALKEAE-KAALQGEVP-VGAVVVYNGEIIGRGHNLRETFSDPTAHAEIVALKEAA 62 Query: 65 EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + + T YVT+EPC P CA I + I+ +V D Sbjct: 63 SKLKNWQLKDCTLYVTVEPC------PMCAGAIYQARIKTLVYGAPD 103 >gi|238788214|ref|ZP_04632009.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC 33641] gi|238723801|gb|EEQ15446.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC 33641] Length = 191 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G + AT YVTLEPC Sbjct: 54 VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGRAVQNYRLIDATLYVTLEPCVM 113 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G L L G+ Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 150 >gi|206972670|ref|ZP_03233610.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH1134] gi|228950569|ref|ZP_04112705.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229077294|ref|ZP_04209977.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2] gi|229176621|ref|ZP_04304027.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W] gi|206732390|gb|EDZ49572.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH1134] gi|228606851|gb|EEK64266.1| hypothetical protein bcere0005_100 [Bacillus cereus 172560W] gi|228706017|gb|EEL58322.1| hypothetical protein bcere0023_200 [Bacillus cereus Rock4-2] gi|228809112|gb|EEM55595.1| hypothetical protein bthur0006_110 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 166 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 60/136 (44%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L ++ +KR I Sbjct: 142 LLTSFFRELRKKRKAI 157 >gi|292900205|ref|YP_003539574.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946] gi|291200053|emb|CBJ47178.1| tRNA-specific adenosine deaminase [Erwinia amylovora ATCC 49946] Length = 164 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 54/129 (41%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M ALR +R W G V ++V D VIG G + + HAE+ AL Sbjct: 11 DEYWMRHALRLARRAWDEG----EVPVGAVLVLDNQVIGEGWNRPIGHHDPTAHAEMMAL 66 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA +I I R+V D +G Sbjct: 67 RQGGKMIENYRLLDTTLYVTLEPCV------MCAGAMIHSRIGRLVYGARDAKTGAAGSL 120 Query: 116 LQWLSQKGI 124 L L G+ Sbjct: 121 LDVLGHPGM 129 >gi|167855119|ref|ZP_02477891.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755] gi|167853754|gb|EDS24996.1| hypothetical protein HPS_06809 [Haemophilus parasuis 29755] Length = 157 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ K G +IG R + HAE+QA+ AG++ + T YVTLEPC Sbjct: 18 PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQQLQNYRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 + CA I+ I R+V D Sbjct: 78 T------MCAGAILHSRIGRLVFGASD 98 >gi|145355155|ref|XP_001421833.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582072|gb|ABP00127.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 125 Score = 40.4 bits (93), Expect = 0.43, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 40/126 (31%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FMS A ++ S +P+ AC++ KD +++G G + GCP Sbjct: 6 SWDDYFMSVAFLSAQ-----RSKDPNKQVGACIVGKDKLILGVGYNGFPRGCPDNALPWS 60 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A + + G + +VT+ PC+ CA+ +I+ Sbjct: 61 KKSANDDPLETKYAYVCHAEMNAIMNKNSASVAGGSLFVTMYPCNE------CAKLVIQA 114 Query: 96 GIRRVV 101 GI+ VV Sbjct: 115 GIKEVV 120 >gi|312862370|ref|ZP_07722613.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus vestibularis F0396] gi|311102013|gb|EFQ60213.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus vestibularis F0396] Length = 172 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FMS AL+ + L + C+IVKD ++GRG A HAEV A++EA Sbjct: 12 FMSEALKEA--QKSLDKAEIPIGCVIVKDREIVGRGHNAREELNQAIMHAEVMAIQEANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TVGNWRLLDCTLFVTIEPC 88 >gi|228898775|ref|ZP_04063059.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL 4222] gi|228860867|gb|EEN05243.1| hypothetical protein bthur0014_110 [Bacillus thuringiensis IBL 4222] Length = 166 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 21/146 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L + R++ K+ K+ S N Sbjct: 142 LLTNFF-RELRKKRKAIKKLEKSNGN 166 >gi|109899420|ref|YP_662675.1| CMP/dCMP deaminase, zinc-binding [Pseudoalteromonas atlantica T6c] gi|109701701|gb|ABG41621.1| tRNA-adenosine deaminase [Pseudoalteromonas atlantica T6c] Length = 162 Score = 40.4 bits (93), Expect = 0.44, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKD ++G G +T HAE+ A+ +AG + T YVTLEPC+ Sbjct: 28 VGAVLVKDQKIVGEGWNQSITLNDPSAHAEMLAIRQAGINVKNYRLIDTTLYVTLEPCTM 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I+R+V D +G Sbjct: 88 ------CAGLLVHSRIKRLVFGAYDAKTGAAG 113 >gi|292669313|ref|ZP_06602739.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541] gi|292649154|gb|EFF67126.1| deoxycytidylate deaminase [Selenomonas noxia ATCC 43541] Length = 158 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 63/157 (40%), Gaps = 42/157 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A+ FS + S +P AC++ +D ++G G Y G P Sbjct: 4 SWDEYFMGVAI-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDSVY 55 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A +G YV+L PC+ C + II+ G Sbjct: 56 PWGRTGDFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSG 109 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 IR VV D S + + + + R ME++ Sbjct: 110 IREVVYLSDKYAATDSTKASKRMLASAGVTCRRMETD 146 >gi|260913765|ref|ZP_05920241.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325] gi|260632304|gb|EEX50479.1| tRNA-specific adenosine deaminase [Pasteurella dagmatis ATCC 43325] Length = 170 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D ++M AL + L P A L+ ++G V+G G + HAE+ A Sbjct: 3 SDLDEKWMRYALELADKAEQLGEI-PVGAVLVDEEGNVLGEGWNLSIIESDPTAHAEIVA 61 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + G+ + T YVTLEPC+ CA I+ I+R+V D Sbjct: 62 LRQGGKTLQNYRLVNTTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 107 >gi|70990810|ref|XP_750254.1| cytosine deaminase [Aspergillus fumigatus Af293] gi|119496775|ref|XP_001265161.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181] gi|66847886|gb|EAL88216.1| cytosine deaminase, putative [Aspergillus fumigatus Af293] gi|119413323|gb|EAW23264.1| cytosine deaminase, putative [Neosartorya fischeri NRRL 181] gi|159130729|gb|EDP55842.1| cytosine deaminase, putative [Aspergillus fumigatus A1163] Length = 148 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 38/82 (46%), Gaps = 14/82 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMSALENSGRLPASAYEGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVV 102 C I ++RVV+ Sbjct: 84 M------CTGACILYKVKRVVI 99 >gi|313894732|ref|ZP_07828293.1| cytidine and deoxycytidylate deaminase zinc-binding region [Selenomonas sp. oral taxon 137 str. F0430] gi|320531057|ref|ZP_08032086.1| cytidine and deoxycytidylate deaminase zinc-binding region [Selenomonas artemidis F0399] gi|312976641|gb|EFR42095.1| cytidine and deoxycytidylate deaminase zinc-binding region [Selenomonas sp. oral taxon 137 str. F0430] gi|320136639|gb|EFW28592.1| cytidine and deoxycytidylate deaminase zinc-binding region [Selenomonas artemidis F0399] Length = 159 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 42/157 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 ++D FM A+ FS + S +P AC++ +D ++G G Y G P Sbjct: 4 TWDEYFMGIAI-FSAYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCDDSEY 55 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A +G YV+L PC+ C + II+ G Sbjct: 56 PWGRTGEFADQKYPYVVHAELNAILNASTSLKGCRIYVSLFPCNE------CCKAIIQSG 109 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 IR VV D S + + + +V R ME++ Sbjct: 110 IREVVYLSDKYAATDSTKASKRMLASAGVVCRRMETD 146 >gi|269121089|ref|YP_003309266.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC 33386] gi|268614967|gb|ACZ09335.1| CMP/dCMP deaminase zinc-binding protein [Sebaldella termitidis ATCC 33386] Length = 164 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 37/160 (23%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGV--------------- 46 S++ FM AL G S +P+ AC+I +D ++G G Sbjct: 9 SWNEYFMGLALL-----SGKRSKDPTTQVGACIIDEDKKIVGIGYNGFPLGSSDDNMPWG 63 Query: 47 -------TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 T Y HAE+ A+ + + +G T YVT PC+ CA+ I++ I R Sbjct: 64 KQGDFLETKYPYVVHAELNAILNSIKSLKGCTVYVTHFPCNE------CAKAIVQSKISR 117 Query: 100 VVVCVDDPDVRVSGRGLQW-LSQKGIIVDRMMESEGKIFL 138 V+ D + S + + L GI ++++ KI L Sbjct: 118 VIYLSDKHKDKDSFKASKRILENAGIKIEKISFGSKKIIL 157 >gi|219870714|ref|YP_002475089.1| tRNA-adenosine deaminase [Haemophilus parasuis SH0165] gi|219690918|gb|ACL32141.1| tRNA-adenosine deaminase, cytosine/adenosine deaminases [Haemophilus parasuis SH0165] Length = 157 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ K G +IG R + HAE+QA+ AG++ + T YVTLEPC Sbjct: 18 PVGAVLVDKTGNIIGEGWNRAIILSDPTAHAEIQAIRMAGQQIQNYRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 + CA I+ I R+V D Sbjct: 78 T------MCAGAILHSRIGRLVFGASD 98 >gi|320539250|ref|ZP_08038920.1| putative cytidine and deoxycytidylate deaminase zinc-binding protein [Serratia symbiotica str. Tucson] gi|320030642|gb|EFW12651.1| putative cytidine and deoxycytidylate deaminase zinc-binding protein [Serratia symbiotica str. Tucson] Length = 170 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V L+V D VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 29 VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V D +G + L G+ Sbjct: 89 ------CAGAMVHSRIRRLVYGTADEKTGAAGSLMDILRHPGM 125 >gi|313206574|ref|YP_004045751.1| cmp/dcmp deaminase zinc-binding protein [Riemerella anatipestifer DSM 15868] gi|312445890|gb|ADQ82245.1| CMP/dCMP deaminase zinc-binding protein [Riemerella anatipestifer DSM 15868] gi|315023430|gb|EFT36438.1| tRNA-specific adenosine-34 deaminase [Riemerella anatipestifer RA-YM] gi|325335978|gb|ADZ12252.1| Cytosine/adenosine deaminase [Riemerella anatipestifer RA-GD] Length = 143 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 35/109 (32%), Positives = 46/109 (42%), Gaps = 17/109 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D FM A F + V C+IV + VI RG T HAE+Q++ Sbjct: 4 DEYFMRMA--FQEALIAFEKDEVPVGCVIVHNERVIARGYNLTETLNDVTAHAEMQSITS 61 Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A G+ + T YVTLEPC+ CA + I RVV+ D Sbjct: 62 AANALGGKYLKDCTMYVTLEPCT------MCAGALFWSQISRVVIGARD 104 >gi|120554632|ref|YP_958983.1| CMP/dCMP deaminase, zinc-binding [Marinobacter aquaeolei VT8] gi|120324481|gb|ABM18796.1| tRNA-adenosine deaminase [Marinobacter aquaeolei VT8] Length = 167 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 V ++V+DG +G G A GC HAE++AL +A GAT YVTLEPC+ Sbjct: 30 VGAIVVRDGKELGVGYNAPITGCDPTAHAEIRALRDASARVGNYRLTGATLYVTLEPCTM 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 C I+ I R+V +P Sbjct: 90 ------CVGAIVHSRISRLVYGAREP 109 >gi|228918972|ref|ZP_04082353.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840687|gb|EEM85947.1| hypothetical protein bthur0011_100 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 166 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 21/146 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDN 162 L + R++ K+ K+ + +N Sbjct: 142 LLTNFF-RELRKKRKAIKKLGGNTEN 166 >gi|283131399|dbj|BAI63401.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 175 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG A HAE+ A+ EA Sbjct: 11 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87 >gi|223939608|ref|ZP_03631483.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514] gi|223891766|gb|EEF58252.1| CMP/dCMP deaminase zinc-binding [bacterium Ellin514] Length = 168 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 37/169 (21%) Query: 7 DARFMSAALR-----FSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57 D FM ALR + R V + +IV++G +I R T HAE+ Sbjct: 12 DNYFMGEALRQAVKAYDREEV-------PIGAVIVREGRIIARAFNQVETLKDATAHAEM 64 Query: 58 QALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 A+ +A E A G T YVT EPC P CA I+ + RVV + DP Sbjct: 65 LAITQA-EAAVGDWRLNECTLYVTKEPC------PMCAGAIVHVRLSRVVFGLSDPKGGG 117 Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 +G + L+ + I + E E + L + + E+R+ L+ Sbjct: 118 AGGAMNLLQFPTLNHRAEITHGVREQECRSLLQQFFS---EQRAQAKLR 163 >gi|85059758|ref|YP_455460.1| tRNA-specific adenosine deaminase [Sodalis glossinidius str. 'morsitans'] gi|84780278|dbj|BAE75055.1| conserved hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 169 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V +G +IG G + + HAE+ AL + G++A AT YVTLEPC Sbjct: 29 VGAVLVLNGAIIGEGWNRSIGHHDPTAHAEIMALRQGGQQAGNYRLLKATLYVTLEPCVM 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I R+V D +G + L G+ Sbjct: 89 ------CAGAMIHARIGRLVFGARDEKTGAAGSLMDVLGHPGM 125 >gi|117617810|ref|YP_857319.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559217|gb|ABK36165.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 179 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 51/116 (43%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D R+M A+ + G+ V ++V G V+G G ++ + C HAEV A+ Sbjct: 16 DERWMRHAMALAARAEGIGEI--PVGAVLVLGGEVVGEGWNRSISEHDACAHAEVMAIRA 73 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AG + T YVTLEPC CA +I ++RVV D +G Sbjct: 74 AGVRLQNYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAAG 123 >gi|53804620|ref|YP_113769.1| cytosine deaminase [Methylococcus capsulatus str. Bath] gi|53758381|gb|AAU92672.1| cytosine deaminase [Methylococcus capsulatus str. Bath] Length = 145 Score = 40.4 bits (93), Expect = 0.49, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 16/101 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 ++ AA+ +R GL + ++V DG ++GRG V HAE+ LE AG Sbjct: 4 YLQAAIAEAR--KGLEEGGIPIGSVLVIDGEIVGRGRNRRVQKGSAILHAEMDCLENAGR 61 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 E R AT Y TL PC C+ I+ GI RVV Sbjct: 62 LSAAEYRRATLYSTLSPCDM------CSGAILLYGIPRVVA 96 >gi|77361256|ref|YP_340831.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis TAC125] gi|76876167|emb|CAI87389.1| tRNA-specific adenosine deaminase [Pseudoalteromonas haloplanktis TAC125] Length = 168 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEE 62 D +M AL +++ L V ++VKD ++ R +T HAE+ A+ + Sbjct: 7 DNYWMQQALTYAKQAEQLDEI--PVGAILVKDNQLVAAGYNRSITDNDPSAHAEMMAVRK 64 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G+ T YVTLEPCS CA ++ I+R+V D +G + Sbjct: 65 GGKALNNYRLIDCTLYVTLEPCSM------CAGLLVHSRIKRLVFGAADAKTGSAGSIMN 118 Query: 118 WLSQ 121 L + Sbjct: 119 LLQE 122 >gi|297623312|ref|YP_003704746.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] gi|297164492|gb|ADI14203.1| tRNA(Ile)-lysidine synthetase [Truepera radiovictrix DSM 17093] Length = 556 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 17/109 (15%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEV 57 P DAR+M AL +R V ++V+ G V+GRG T G P HAE+ Sbjct: 398 PAPDEDARWMRLALNEAR--RAAERGELPVGAVVVRGGAVLGRGHNTTRESGDPSAHAEL 455 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 A+ +A G T +VTLEPC P C ++ + RVV Sbjct: 456 HAIRQAAAALGDWRLAGCTLFVTLEPC------PMCFGALLSAHLPRVV 498 >gi|283131386|dbj|BAI63389.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 183 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG A HAE+ A+ EA Sbjct: 19 FMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANA 76 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 77 HEGNWRLLDTTLFVTIEPC 95 >gi|51245291|ref|YP_065175.1| hypothetical protein DP1439 [Desulfotalea psychrophila LSv54] gi|50876328|emb|CAG36168.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 166 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 17/120 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 + + DA +M AL + G P V ++V+DG +I G +T HAE+ Sbjct: 6 IEARDALWMGYALDEAA-RAGANGEVP-VGAVLVQDGELIATGLNGMITHNDPSAHAEIV 63 Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL +AG+ AT YVTLEPC C II+ I+R+V D +G Sbjct: 64 ALRQAGQVLNNYRFPEATLYVTLEPCIM------CMGAIIQARIKRLVFAAFDTKTGAAG 117 >gi|118397|sp|P00814|DCTD_BPT2 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP deaminase Length = 188 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150 >gi|19745357|ref|NP_606493.1| hypothetical protein spyM18_0196 [Streptococcus pyogenes MGAS8232] gi|73921072|sp|Q8P2R7|Y196_STRP8 RecName: Full=Uncharacterized deaminase spyM18_0196 gi|19747462|gb|AAL96992.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232] Length = 159 Score = 40.0 bits (92), Expect = 0.50, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEAE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EMMAINEANAHEGNWRLLDTTLFVTIEPC 87 >gi|288931740|ref|YP_003435800.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM 10642] gi|288893988|gb|ADC65525.1| CMP/dCMP deaminase zinc-binding protein [Ferroglobus placidus DSM 10642] Length = 149 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 61/158 (38%), Gaps = 49/158 (31%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 S D FM A ++ T +V +IVKD ++ T Y G P Sbjct: 4 SLDEYFMEIAKVVAKRS---TCLRQNVGAVIVKDKRILS---TGYNGAPMGLPHCLDIGC 57 Query: 54 -------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQF 91 HAE A+ +A G +GAT Y T +PC CA+ Sbjct: 58 LREELNVPSGERHELCRAVHAEQNAIIQAAVHGVSIKGATLYTTHQPCIM------CAKM 111 Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 II GI RVV D RGL++L + GI +D + Sbjct: 112 IINAGIVRVVYGKRYAD----ERGLEFLKEAGIKIDYL 145 >gi|78776348|ref|YP_392663.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM 1251] gi|78496888|gb|ABB43428.1| CMP/dCMP deaminase, zinc-binding [Sulfurimonas denitrificans DSM 1251] Length = 145 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 51/125 (40%), Gaps = 42/125 (33%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------------- 53 D F++ A+ ++ + V +IVKDG ++ G Y G P Sbjct: 4 DENFINIAIEIAK---ASKCVSKQVGAVIVKDGRILSTG---YNGTPAGYINCREHWEDK 57 Query: 54 --------------HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A + AT YVTLEPCS C++ II G Sbjct: 58 YTHEHHEWSKTYEIHAEMNAIIWAARKGISIENATIYVTLEPCS------ECSKNIIASG 111 Query: 97 IRRVV 101 I+R+V Sbjct: 112 IQRIV 116 >gi|257453281|ref|ZP_05618580.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R] gi|257467124|ref|ZP_05631435.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563] gi|315918255|ref|ZP_07914495.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563] gi|317059814|ref|ZP_07924299.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R] gi|313685490|gb|EFS22325.1| deoxycytidylate deaminase [Fusobacterium sp. 3_1_5R] gi|313692130|gb|EFS28965.1| deoxycytidylate deaminase [Fusobacterium gonidiaformans ATCC 25563] Length = 160 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 42/172 (24%), Positives = 67/172 (38%), Gaps = 58/172 (33%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 ++D FM AL + S +P+ AC++ D +IG G Y G P Sbjct: 8 TWDEYFMGVALL-----SAMRSKDPNTQVGACIVSPDKKIIGLG---YNGLPKGCEDDEF 59 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ + + + T YV L PC C++ II+ G Sbjct: 60 PWEREGEFLETKYPYVCHAELNAILNSTQSLKNCTIYVALFPCHE------CSKAIIQSG 113 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148 IR +V D ++ I RM++S G ++ R++EK Sbjct: 114 IREIVYLSDKYAE----------TESNIASKRMLDSAGVVY------RKLEK 149 >gi|160914266|ref|ZP_02076487.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991] gi|158433893|gb|EDP12182.1| hypothetical protein EUBDOL_00276 [Eubacterium dolichum DSM 3991] Length = 170 Score = 40.0 bits (92), Expect = 0.51, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A+ + +G + YV+L PC+ CA+ II+ GIRRVV D Sbjct: 79 TKYPYVVHAELNAILNSSTNLQGCSIYVSLFPCNE------CAKAIIQSGIRRVVYESD 131 >gi|330858731|ref|YP_004415106.1| putative deoxycytidylate deaminase [Shigella phage Shfl2] gi|327397665|gb|AEA73167.1| putative deoxycytidylate deaminase [Shigella phage Shfl2] Length = 193 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150 >gi|237745836|ref|ZP_04576316.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS] gi|229377187|gb|EEO27278.1| tRNA-specific adenosine deaminase [Oxalobacter formigenes HOxBLS] Length = 150 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AAL + + + V ++V +G VI G ++ + HAE+ AL Sbjct: 3 DDVFMRAAL--DQAALAKEAGEVPVGAVVVLEGRVIASGFNCPISRHDPTAHAEIMALRN 60 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVTLEPCS CA +I ++RVV DP G + Sbjct: 61 AAKICGNYRLPACELYVTLEPCSM------CAGAMIHARLKRVVFGAFDPKTGACGSVVD 114 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEK 148 QK + + +++ E + L + + +K Sbjct: 115 LFGQKELNHHTTVTSGVLQDECSLLLKMFFAERRKK 150 >gi|111224596|ref|YP_715390.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a] gi|111152128|emb|CAJ63855.1| Putative riboflavin/cytosine deaminase [Frankia alni ACN14a] Length = 187 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 69 GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y +LEPCS P C + I+ GI RVV +P + V G + L+ G+ V Sbjct: 109 GATVYSSLEPCSARASRPWTCTELILAAGIGRVVFAWREPSLFVDCDGAERLAAAGVEV 167 >gi|2493560|sp|P78594|FCA1_CANAL RecName: Full=Cytosine deaminase; AltName: Full=Cytosine aminohydrolase gi|1762320|gb|AAC15782.1| cytosine deaminase [Candida albicans] Length = 150 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 24/111 (21%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P +C+I D V+G+G + + H E+ ALE AG + + T Y TL PCS Sbjct: 26 PIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLPGKTYKDCTIYTTLSPCS 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 C I+ G +RVV+ G + +L + ++++ +E Sbjct: 86 M------CTGAILLYGFKRVVM----------GENVNFLGNEKLLIENGVE 120 >gi|312864368|ref|ZP_07724601.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus downei F0415] gi|311100089|gb|EFQ58300.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus downei F0415] Length = 157 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVKDG +IGRG A HAE+ A+ +A + Sbjct: 12 FMQEALKEAQ--KSLAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEIMAINQANQ 69 Query: 66 EARG-----ATAYVTLEPC 79 + +VT+EPC Sbjct: 70 TEGNWRLLDSALFVTIEPC 88 >gi|289675579|ref|ZP_06496469.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 37/170 (21%) Query: 199 TVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 TVLAD LT R + L +P+R+++D ++ LD+ + ++V Sbjct: 2 TVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQAG---SALVV 58 Query: 249 T-----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T E +LALA ++ DL++L+ L RGV +LVE G Sbjct: 59 TCAAASARGRYQEEGHEMLALADSAGHV--------DLRRLMGELAARGVNEVLVEAGPR 110 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEE--GYLEKNFMCVR 342 +A +F LVD L+ + +G P PL + LE N M +R Sbjct: 111 LAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIMEMR 160 >gi|229823590|ref|ZP_04449659.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271] gi|229787034|gb|EEP23148.1| hypothetical protein GCWU000282_00889 [Catonella morbi ATCC 51271] Length = 178 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + L+VKDG+++ + HAE+ A+E A + G T YVTLEPC Sbjct: 37 IGALLVKDGVLLASAYNLREVNHQATAHAELLAIEAANQALGAWRLEGCTLYVTLEPC-- 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 P CA ++ + +VV DP Sbjct: 95 ----PMCAGALVLSRVDQVVYGASDP 116 >gi|104780171|ref|YP_606669.1| deoxycytidylate deaminase [Pseudomonas entomophila L48] gi|95109158|emb|CAK13855.1| putative deoxycytidylate deaminase [Pseudomonas entomophila L48] Length = 575 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 20/115 (17%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPP 87 VA LI GI + +T YG HAE++AL G A +T Y T PC + Sbjct: 414 VAPLIKDSGI---KDITEYGRVVHAEMEALLSSSRVGVSAVDSTLYCTTYPCHN------ 464 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 CA+ II G+ RVV P + Q I ++R S +F A++ Sbjct: 465 CAKHIIAAGVERVVYVEPYPKSKA-----QKFHSDSISLER---SRKGVFFDAFI 511 >gi|331086590|ref|ZP_08335668.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410423|gb|EGG89855.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 163 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A+R ++ L + C+IV +I RG HAE+ A+++ Sbjct: 4 DEKYMKEAIRQAKKAYALKEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A + T YVTLEPC C+ I++ +++VVV +P +G Sbjct: 62 ASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 111 >gi|238753915|ref|ZP_04615275.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473] gi|238707903|gb|EEQ00261.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473] Length = 171 Score = 40.0 bits (92), Expect = 0.52, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 22/170 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD---GIVIGRGVTAYGGCPHAEV 57 M D +M AL ++ P A L++ + GI R + + HAE+ Sbjct: 1 MSTEYNDEYWMRQALELAQ-RAQEEGEVPVGAVLVLDNQAIGIGWNRPIVHHDPTAHAEM 59 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL + G+ + AT YVTLEPC CA ++ IRR+V +D + Sbjct: 60 MALRQGGQALQNYRLLNATLYVTLEPCVM------CAGAMVHSRIRRLVYGANDIKTGAA 113 Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 G L L G+ I ++ E L + ++ E++ TLK+A Sbjct: 114 GSLLDILRHPGMNHQVEITAGVLAEECSQTLSTFFRQRREQQK--TLKLA 161 >gi|116326433|ref|YP_803153.1| dCMP deaminase [Enterobacteria phage RB32] gi|228861145|ref|YP_002854168.1| dCMP deaminase [Enterobacteria phage RB51] gi|228861526|ref|YP_002854547.1| dCMP deaminase [Enterobacteria phage RB14] gi|115344026|gb|ABI95035.1| dCMP deaminase [Enterobacteria phage RB32] gi|227438542|gb|ACP30855.1| dCMP deaminase [Enterobacteria phage RB14] gi|227438819|gb|ACP31131.1| dCMP deaminase [Enterobacteria phage RB51] gi|291290435|dbj|BAI83230.1| dCMP deaminase [Enterobacteria phage AR1] Length = 193 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150 >gi|9632715|ref|NP_049828.1| Cd dCMP deaminase [Enterobacteria phage T4] gi|118398|sp|P16006|DCTD_BPT4 RecName: Full=Deoxycytidylate deaminase; AltName: Full=dCMP deaminase; Short=dCD gi|5354339|gb|AAD42546.1|AF158101_133 Cd dCMP deaminase [Enterobacteria phage T4] gi|215838|gb|AAA32489.1| deoxycytidylate deaminase (EC 3.5.4.12) [Enterobacteria phage T4] gi|299780576|gb|ADJ39938.1| deoxycytidylate deaminase [Enterobacteria phage T4T] Length = 193 Score = 40.0 bits (92), Expect = 0.53, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARNGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYC 150 >gi|228963119|ref|ZP_04124290.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar sotto str. T04001] gi|228796575|gb|EEM44012.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar sotto str. T04001] Length = 195 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 20/170 (11%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 L + +KR I N+ S F N++ +L Sbjct: 142 LLTNFFRELRKKRKAIKNWRKAMGTNVFAFYKETSYTDNAFNEGNRILVL 191 >gi|254463267|ref|ZP_05076683.1| cytosine deaminase [Rhodobacterales bacterium HTCC2083] gi|206679856|gb|EDZ44343.1| cytosine deaminase [Rhodobacteraceae bacterium HTCC2083] Length = 157 Score = 40.0 bits (92), Expect = 0.54, Method: Compositional matrix adjust. Identities = 37/107 (34%), Positives = 49/107 (45%), Gaps = 17/107 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGC---PHAEVQALEEA-- 63 FM AAL +R + + V ++VKDG +IGRG A GC HAE+ A+ EA Sbjct: 14 FMEAALVEAR--LAEAAGEVPVGAVVVKDGAIIGRGRNATRTGCDPSAHAEILAIREACA 71 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + YVTLEPC+ CA I + R+ DP Sbjct: 72 VLGQDRLVDCDLYVTLEPCAM------CAGAIAHARVARLYYGASDP 112 >gi|313205464|ref|YP_004044121.1| cmp/dcmp deaminase zinc-binding protein [Paludibacter propionicigenes WB4] gi|312444780|gb|ADQ81136.1| CMP/dCMP deaminase zinc-binding protein [Paludibacter propionicigenes WB4] Length = 141 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+M R +R W V L+VK+ ++I G Y G P Sbjct: 8 LDNRYM----RMARIWAENSYCERRKVGALLVKNQMIISDG---YNGTPSGFENKCEDEN 60 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + + + AT YVT PC CA+ II+ GI+RVV Sbjct: 61 NVSKPYVLHAEANAISKIARSHNSSDNATLYVTASPCIE------CAKLIIQAGIKRVV 113 >gi|329117262|ref|ZP_08245979.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus parauberis NCFD 2020] gi|326907667|gb|EGE54581.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus parauberis NCFD 2020] Length = 169 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM ALR + L + C+IVKDG +IGRG A HAE+ A+ +A Sbjct: 11 FMREALREA--EKSLAKEEIPIGCVIVKDGQIIGRGHNAREELNQAIMHAEMMAISQANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLETTMFVTIEPC 87 >gi|296271673|ref|YP_003654304.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis DSM 7299] gi|296095848|gb|ADG91798.1| CMP/dCMP deaminase zinc-binding protein [Arcobacter nitrofigilis DSM 7299] Length = 144 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 43/101 (42%), Gaps = 39/101 (38%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63 V +IVKDG ++ G Y G P HAE+ A+ A Sbjct: 25 VGAVIVKDGRILSTG---YNGTPAGYVNCKEHWNDSYTKEHHDWSKTYEIHAEMNAIIWA 81 Query: 64 GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + GAT YVTLEPCS C++ +I GI+R+V Sbjct: 82 ARKGISIEGATIYVTLEPCS------ECSKNLIAAGIQRIV 116 >gi|296136215|ref|YP_003643457.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12] gi|295796337|gb|ADG31127.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12] Length = 187 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 33/155 (21%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D FM AL ++ W +G V +IVKDG VI G + + HAE+ AL Sbjct: 12 DRAFMRLALDQAQNAWLLGEVP----VGAVIVKDGKVIATGYNRPIGDHDPTAHAEIVAL 67 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A T YVTLEPC+ CA ++ RVV DP +G Sbjct: 68 RQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAAGS- 120 Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 +VD + +E ++ H +T ++E+ + Sbjct: 121 ---------VVD--LFAEPRLNHHCDITPEIEQEA 144 >gi|147676360|ref|YP_001210575.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI] gi|146272457|dbj|BAF58206.1| cytosine/adenosine deaminases [Pelotomaculum thermopropionicum SI] Length = 156 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 17/123 (13%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63 A +M AL ++ GL V ++V+DG +IGRG T HAE+ A+ EA Sbjct: 7 AGYMREALAEAKKAYGLGEV--PVGAVVVRDGEIIGRGHNLRETLKDSTAHAEILAMREA 64 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G Y T+EPC+ CA II+ + +V DP +G + Sbjct: 65 ARIVGDWRLNGTVLYSTIEPCAM------CAGAIIQFRVATLVYGAADPKAGAAGSVIDV 118 Query: 119 LSQ 121 + Q Sbjct: 119 IGQ 121 >gi|94310515|ref|YP_583725.1| tRNA-adenosine deaminase [Cupriavidus metallidurans CH34] gi|93354367|gb|ABF08456.1| tRNA-specific adenosine deaminase [Cupriavidus metallidurans CH34] Length = 189 Score = 40.0 bits (92), Expect = 0.55, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M+AAL +R + + V ++V D +I RG + + HAE+QAL Sbjct: 14 DRFYMAAALDEAR--LAEAAGEVPVGAVVVWDDKIIARGHNLPIRSVDPSAHAEMQALRA 71 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVTLEPC P C+ I+ +R VV DP +G + Sbjct: 72 AAKVLGNYRMPECEIYVTLEPC------PMCSGAILHARLRHVVFGATDPKTGAAGSVVD 125 Query: 118 WLSQ 121 +Q Sbjct: 126 LFAQ 129 >gi|294635160|ref|ZP_06713669.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685] gi|291091465|gb|EFE24026.1| tRNA-specific adenosine deaminase [Edwardsiella tarda ATCC 23685] Length = 182 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G +T + HAE+ AL++ G + AT YVTLEPC Sbjct: 38 VGAVLVLDDQVIGEGWNRPITRHDPTAHAEIMALQQGGAVLQNYRLLEATLYVTLEPCVM 97 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V D +G L L G+ Sbjct: 98 ------CAGAMVHSRIRRLVYGASDLKTGAAGSLLDVLGHPGM 134 >gi|156564196|ref|YP_001429706.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36] gi|154622893|gb|ABS83773.1| deoxycytidylate deaminase [Bacillus phage 0305phi8-36] Length = 255 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 54/130 (41%), Gaps = 41/130 (31%) Query: 6 FDARFMSAALRFSRWHVGL--TSTNPSVACLIVKDGIVIGRGVTAYGGCP---------- 53 +D F+ AL HV T + V C++VK+ VI T Y G P Sbjct: 116 WDQYFIEQAL-----HVAERGTCSRARVGCVLVKENRVIA---TGYNGSPKGMPHCDDIG 167 Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE AL + G + GATAYVT EPC + C + + + GI+ Sbjct: 168 HLMKDGHCVRTNHAEENALLQCARLGISSEGATAYVTHEPCLY------CTRQLNQAGIK 221 Query: 99 RVVVCVDDPD 108 R+V P+ Sbjct: 222 RIVYVKPYPN 231 >gi|224475714|ref|YP_002633320.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300] gi|222420321|emb|CAL27135.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300] Length = 159 Score = 40.0 bits (92), Expect = 0.56, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 20/133 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++VK+G VI R T HAE A+E+A E T YVTLEPC Sbjct: 26 IGAIVVKEGEVIARAHNLRETVQQPTAHAEHIAIEKAAEAVGSWRLEDCTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 C+ I+ I RVV DP SG + L + + +V ++E+E Sbjct: 86 ------CSGAIVMSRIPRVVYGASDPKGGCSGSLMDLLQEPRFNHRAEVVSGVLENECGA 139 Query: 137 FLHAYLTRQVEKR 149 L ++ + EK+ Sbjct: 140 ILKSFFKQLREKK 152 >gi|167742541|ref|ZP_02415315.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14] gi|167821693|ref|ZP_02453373.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91] Length = 60 Score = 40.0 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 27/56 (48%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 S D M+ ALR + + T NP V C+I + +G G G PHAEV A Sbjct: 5 SDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHA 60 >gi|118618636|ref|YP_906968.1| hypothetical protein MUL_3305 [Mycobacterium ulcerans Agy99] gi|118570746|gb|ABL05497.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium ulcerans Agy99] Length = 260 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 48/173 (27%), Positives = 74/173 (42%), Gaps = 20/173 (11%) Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTALLA 243 LLR +D ILVG GTV + R ++ R + P ++ +S + L Sbjct: 75 LLRELADVILVGAGTVRIEGYSGAQRGVAERQQRQARGQSEVPQLAIATNSGQLDRDL-- 132 Query: 244 PVIIVTENDDPVLALA-----FRKKNIN---IIYCDCRDLKK-----LLTILVGRGVTSL 290 PV TE VL A R++ ++ C +D + LL L GRG+ + Sbjct: 133 PVFTRTEVPPLVLTAAAAVYDTRRRLTGLAEVVGCSGKDPHRVDEGLLLARLAGRGMRCI 192 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCV 341 L EGG + S I L+D + L + +V+ GG+P + G L+ C Sbjct: 193 LTEGGPTLFGSLIEQDLLDELCLTIAPVVV--GGLPRRIASGPGQLQTRMHCA 243 >gi|283131371|dbj|BAI63375.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] gi|283131431|dbj|BAI63432.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 183 Score = 40.0 bits (92), Expect = 0.57, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 9 MPYSLEEQTYFMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 66 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 67 EMMAINEANAYEGNWRLLDTTMFVTIEPC 95 >gi|220919666|ref|YP_002494969.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacterium nodulans ORS 2060] gi|219952086|gb|ACL62477.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacterium nodulans ORS 2060] Length = 240 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 7/112 (6%) Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKK 277 + + +DPH ++ + + V +++E R+ ++ ++ D DL++ Sbjct: 88 LAVAIDPHGRVHYGQDHVLGDHV--VAVLSEAVSDAYLAELREDGVSYLFAGPDGTDLRR 145 Query: 278 LLTILVGR--GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 + L G+ GV ++L++GGA++ +F+ RL+D I L + G G+PS Sbjct: 146 AMDAL-GQTFGVETILLQGGASINGAFLKQRLIDEISLLIQPAIDGLAGVPS 196 >gi|217972561|ref|YP_002357312.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS223] gi|217497696|gb|ACK45889.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS223] Length = 175 Score = 40.0 bits (92), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L EAG E R AT YVTLEPC+ Sbjct: 35 VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 94 -----MCAGAMVHSRIARVVFGARDEKTGAAG 120 >gi|304410027|ref|ZP_07391646.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183] gi|307302260|ref|ZP_07582018.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175] gi|304351436|gb|EFM15835.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS183] gi|306914298|gb|EFN44719.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica BA175] Length = 175 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L EAG E R AT YVTLEPC+ Sbjct: 35 VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCA- 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 94 -----MCAGAMVHSRIARVVFGARDEKTGAAG 120 >gi|152981408|ref|YP_001353698.1| hypothetical protein mma_2008 [Janthinobacterium sp. Marseille] gi|151281485|gb|ABR89895.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 159 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 51/127 (40%), Gaps = 21/127 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 DA FM AL +R W +G V ++VKDG VI G + + HAE+ AL Sbjct: 3 DAIFMRQALDQARNAWTLGEVP----VGAVVVKDGEVIATGFNQPIGTHDPTAHAEIMAL 58 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A G +VTLEPC C+ ++ + RVV DP G Sbjct: 59 RAAASILGNYRLPGCELFVTLEPCVM------CSGAMMHARLARVVFGAPDPKTGACGSV 112 Query: 116 LQWLSQK 122 + Q Sbjct: 113 VNLFEQN 119 >gi|255712643|ref|XP_002552604.1| KLTH0C08756p [Lachancea thermotolerans] gi|238933983|emb|CAR22166.1| KLTH0C08756p [Lachancea thermotolerans] Length = 610 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 11/115 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGEEA 67 ++M A+ ++ G T+T SV ++ V+ G + G HAE ALE+ E++ Sbjct: 459 KYMEMAINEAK-KCGPTTTAFSVGAVLTNSDKVLSTGFSRELPGNTHAEQCALEKYFEQS 517 Query: 68 ------RGATAYVTLEPCS-HYGRSPPCAQFIIEC--GIRRVVVCVDDPDVRVSG 113 G+ Y T+EPCS + PC II+ IR V V V +PD V Sbjct: 518 GNRSVPPGSVLYTTMEPCSFRLSGNKPCVDRIIDASKSIRTVFVGVMEPDTFVKN 572 >gi|167748009|ref|ZP_02420136.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662] gi|167652586|gb|EDR96715.1| hypothetical protein ANACAC_02746 [Anaerostipes caccae DSM 14662] Length = 152 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + C+IV DG +I R HAE+ A+E+A ++ T Y+TLEPC Sbjct: 26 IGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 CA I++ I +VV+ +P +G L L ++ Sbjct: 86 ------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQRE 120 >gi|154482616|ref|ZP_02025064.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC 27560] gi|149736516|gb|EDM52402.1| hypothetical protein EUBVEN_00283 [Eubacterium ventriosum ATCC 27560] Length = 163 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 44/131 (33%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A L S +P+ AC++ D ++ G Y G P Sbjct: 11 SWDEYFMGVASL-----AALRSKDPNTQVGACIVSDDNKILSMG---YNGLPVGCSDDEF 62 Query: 54 ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 H+E+ A L G GA YVTL PC+ CA+ II+ Sbjct: 63 PWNRESDDPYDNKYFYTTHSELNAILNYRGGSLEGAKIYVTLFPCNE------CAKAIIQ 116 Query: 95 CGIRRVVVCVD 105 CGI++V+ D Sbjct: 117 CGIKKVIYGDD 127 >gi|146341264|ref|YP_001206312.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp. ORS278] gi|146194070|emb|CAL78088.1| putative cytidine/deoxycytidylate deaminase [Bradyrhizobium sp. ORS278] Length = 165 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTA--YGGCPHAE 56 MP D FM A++ + + +P + C+IV D + R A + HAE Sbjct: 1 MPNLKTDEHFMQEAIKIATQDGADPALSP-IGCVIVLGSDIVAAERNHVAAKHDATAHAE 59 Query: 57 VQALEEAGE-----EARGATAYVTLEPC 79 ++A+ AG E RGAT Y TL+PC Sbjct: 60 IEAIRAAGRGFDDGELRGATLYTTLQPC 87 >gi|323128130|gb|ADX25427.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 175 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 31/89 (34%), Positives = 40/89 (44%), Gaps = 12/89 (13%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHA 55 MP S FM AL+ + L + C+IVKDG +IGRG A HA Sbjct: 1 MPYSLEEQTYFMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHA 58 Query: 56 EVQALEEAGEEARG-----ATAYVTLEPC 79 E+ A+ EA T +VT+EPC Sbjct: 59 EMMAINEANAYEGNWRLLDTTMFVTIEPC 87 >gi|238796745|ref|ZP_04640251.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969] gi|238719476|gb|EEQ11286.1| tRNA-specific adenosine deaminase [Yersinia mollaretii ATCC 43969] Length = 181 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 41 VGAVLVLDNQVIGEGWNRSIRDNDPTAHAEIMALRQGGQAVQNYRLLEATLYVTLEPC-- 98 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 99 ----VMCAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 137 >gi|160876246|ref|YP_001555562.1| zinc-binding CMP/dCMP deaminase [Shewanella baltica OS195] gi|160861768|gb|ABX50302.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS195] gi|315268435|gb|ADT95288.1| CMP/dCMP deaminase zinc-binding protein [Shewanella baltica OS678] Length = 175 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L EAG E R AT YVTLEPC+ Sbjct: 35 VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCAM 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 95 ------CAGAMVHSRIARVVFGARDEKTGAAG 120 >gi|261208197|ref|ZP_05922870.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6] gi|289566587|ref|ZP_06447008.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF] gi|294615830|ref|ZP_06695673.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636] gi|260077454|gb|EEW65172.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6] gi|289161632|gb|EFD09511.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF] gi|291591320|gb|EFF22986.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636] Length = 171 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V DG V+GRG T HAE+ A++EA E+ AT +VTLEPC Sbjct: 33 IGAVVVLDGKVVGRGYNLRETTQDATTHAEMLAIKEACEKVGSWRLEDATLFVTLEPC-- 90 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C+ +I + V DP +G Sbjct: 91 ----PMCSGAMILSRVAEVYFGAYDPKGGTAG 118 >gi|156372900|ref|XP_001629273.1| predicted protein [Nematostella vectensis] gi|156216269|gb|EDO37210.1| predicted protein [Nematostella vectensis] Length = 208 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 61/147 (41%), Gaps = 48/147 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FMS A ++ S +PS AC++ K+ ++G G Y G P Sbjct: 48 SWDDYFMSVAFLSAQ-----RSKDPSSQVGACIVNKERKIVGIG---YNGMPNGCSDDEL 99 Query: 54 ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 HAE+ A L + + +G T YV L PC+ C++ II+ Sbjct: 100 PWNRHADDELDTKYPYVCHAEMNAILNKNSADVKGCTVYVALFPCNE------CSKIIIQ 153 Query: 95 CGIRRVVVCV----DDPDVRVSGRGLQ 117 G++ VV D P ++ S R L Sbjct: 154 AGLKEVVFVSDKYHDKPSMKASRRLLD 180 >gi|75676735|ref|YP_319156.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Nitrobacter winogradskyi Nb-255] gi|74421605|gb|ABA05804.1| tRNA-adenosine deaminase [Nitrobacter winogradskyi Nb-255] Length = 148 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 44/99 (44%), Gaps = 15/99 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81 + C+IV+DG +I R +T HAEV AL A E G YVTLEPC+ Sbjct: 25 IGCVIVRDGEIIAAAGNRTLTDRDPTAHAEVLALRAAAHVLGSERLTGCDLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 CA I IRR+ DP G+++ + Sbjct: 85 ------CAAAISFARIRRLYYGASDPKGGAVEYGVRFFA 117 >gi|317473697|ref|ZP_07932984.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Anaerostipes sp. 3_2_56FAA] gi|316898818|gb|EFV20845.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 152 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + C+IV DG +I R HAE+ A+E+A ++ T Y+TLEPC Sbjct: 26 IGCVIVLDGKIIARAYNQRNKRKTTLAHAELLAIEKASKKTGDWRLEECTMYITLEPCQM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 CA I++ I +VV+ +P +G L L ++ Sbjct: 86 ------CAGAIVQARIPKVVIGAMNPKAGCAGSILNILQRE 120 >gi|317049171|ref|YP_004116819.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b] gi|316950788|gb|ADU70263.1| CMP/dCMP deaminase zinc-binding protein [Pantoea sp. At-9b] Length = 165 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M ALR +R W G V ++V+ VIG G + + HAE+ AL Sbjct: 6 DEYWMRHALRLARLAWEQG----EVPVGAVLVQGDTVIGEGWNRPIGQHDPTAHAEIMAL 61 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA ++ I R+V D +G Sbjct: 62 RQGGKVLENYRLLDTTLYVTLEPCVM------CAGAMVHSRITRLVYGAKDEKTGAAGSL 115 Query: 116 LQWLSQKGI 124 L + G+ Sbjct: 116 LDVIGHPGM 124 >gi|119476440|ref|ZP_01616791.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine gamma proteobacterium HTCC2143] gi|119450304|gb|EAW31539.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [marine gamma proteobacterium HTCC2143] Length = 159 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 68/150 (45%), Gaps = 35/150 (23%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AA++ ++ G P A +++ D VIG G ++ HAE+ A+++ Sbjct: 6 DHHYMEAAIKLAQ-KAGALGEVPVGAVVVLNDK-VIGEGFNQPISLSDPTAHAEMVAIKD 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + + AT YVT+EPC+ CA ++ ++RVV + Sbjct: 64 AAKALQNYRLPEATLYVTIEPCTM------CAGAMVHARVKRVVYGATE----------- 106 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147 S+ G+ ES G +F + YL +VE Sbjct: 107 --SKSGV-----AESNGCLFDNTYLNHKVE 129 >gi|255283094|ref|ZP_05347649.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM 14469] gi|255266396|gb|EET59601.1| putative deoxycytidylate deaminase [Bryantella formatexigens DSM 14469] Length = 160 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM A+ G+ S +P+ AC++ D ++ G + GC Sbjct: 9 SWDEYFMGVAML-----SGMRSKDPNTQVGACIVSSDNKILSMGYNGFPIGCSDDDFPWE 63 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 H+E+ A L G GAT YV+L PC+ CA+ II+ GI+ Sbjct: 64 REGEALDTKYLYTTHSELNAILNYRGGSLDGATLYVSLFPCNE------CAKAIIQAGIK 117 Query: 99 RVVVCVD 105 ++V D Sbjct: 118 QIVYDCD 124 >gi|209886356|ref|YP_002290213.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5] gi|209874552|gb|ACI94348.1| tRNA-specific adenosine deaminase [Oligotropha carboxidovorans OM5] Length = 181 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 52/121 (42%), Gaps = 17/121 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64 FM ALR + + + C++V++G VI R +T HAE+ AL EA Sbjct: 39 FMDLALR--QAQNAEANGEVPIGCVVVQNGTVIAAAGNRTITDRDPTAHAEMLALREAAS 96 Query: 65 ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E YVTLEPC+ CA I IRR+ DP G+++ + Sbjct: 97 KLGRERLADCDLYVTLEPCTM------CAGAISHARIRRLYYGALDPKGGAIDSGVRFFA 150 Query: 121 Q 121 Q Sbjct: 151 Q 151 >gi|93006499|ref|YP_580936.1| CMP/dCMP deaminase, zinc-binding [Psychrobacter cryohalolentis K5] gi|92394177|gb|ABE75452.1| tRNA-adenosine deaminase [Psychrobacter cryohalolentis K5] Length = 197 Score = 40.0 bits (92), Expect = 0.62, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 69/166 (41%), Gaps = 24/166 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62 D ++M+ AL+ ++ G V ++V + +IG+G G C HAE+ AL + Sbjct: 40 DIKWMTEALKLAK--QGAEKEEVPVGAVLVHNQQIIGQGFNEPIGRCDATAHAEIVALRD 97 Query: 63 AGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A T YVTLEPC+ C +I + R+V +P V G + Sbjct: 98 ACTRLNNYRLPLKTTLYVTLEPCTM------CMGAMIHARVDRLVYAAHEPRAGVLGSQM 151 Query: 117 QWLSQKGIIVDRMMESEGKIFLHAY-----LTRQVEKRSHITLKIA 157 L+++ RM G H+ RQ K + + KI+ Sbjct: 152 N-LAEQPFYNHRMQVDAGLCREHSSQMLKDFFRQRRKVAKVNRKIS 196 >gi|227513704|ref|ZP_03943753.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577] gi|227522506|ref|ZP_03952555.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290] gi|227083023|gb|EEI18335.1| possible guanine deaminase [Lactobacillus buchneri ATCC 11577] gi|227090328|gb|EEI25640.1| possible guanine deaminase [Lactobacillus hilgardii ATCC 8290] Length = 157 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 D RFM AL L P + +I +DG +IGRG G HAE+ A+EE Sbjct: 6 DERFMKMAL-IEAQKAYLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAIEE 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A R YVT+EPC C+ I+ I RVV D Sbjct: 64 ACRYLRSWRLVDCELYVTIEPC------LMCSGAIVNSRIDRVVFGARDK 107 >gi|157961143|ref|YP_001501177.1| zinc-binding CMP/dCMP deaminase [Shewanella pealeana ATCC 700345] gi|157846143|gb|ABV86642.1| CMP/dCMP deaminase zinc-binding [Shewanella pealeana ATCC 700345] Length = 163 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG V+ G G HAE+Q L +AG+ + T YVTLEPC+ Sbjct: 19 VGAVLVKDGEVVSAGFNFSIGLHDPSAHAEMQCLRQAGQIMQNYRLLDTTLYVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA I+ I R+V D +G Sbjct: 79 ------CAGAIVHSRINRLVFGARDEKTGAAG 104 >gi|326336121|ref|ZP_08202293.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691630|gb|EGD33597.1| cytidine/deoxycytidylate deaminase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 150 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 36/139 (25%) Query: 9 RFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------- 53 R+ A +R ++ W S V +IVKD ++I G Y G P Sbjct: 6 RYDRAYMRMAQEWAKLSYSQRKQVGAIIVKDRMIISDG---YNGTPTGFDNCCEDEQGQT 62 Query: 54 -----HAEVQALEEAGEEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE A+ + + GAT Y+T+ PC C++ I + GI RVV Sbjct: 63 LWYVLHAEANAILKVAASTQSCAGATLYITMSPC------KECSKLIHQAGIIRVVY--- 113 Query: 106 DPDVRVSGRGLQWLSQKGI 124 + GL +L++ G+ Sbjct: 114 -KEAYKDTSGLDFLAKAGV 131 >gi|295094398|emb|CBK83489.1| Cytosine/adenosine deaminases [Coprococcus sp. ART55/1] Length = 169 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + C+IV D +I RG HAE+ A+E+A ++ T YVTLEPC Sbjct: 39 IGCVIVHDDRIIARGFNKRNLKKTTLAHAEILAIEQASKKLGDWRLEECTMYVTLEPCQM 98 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 CA I++ I VV+ +P +G + L K Sbjct: 99 ------CAGAIVQARIPNVVIGCMNPKAGCAGSIINLLDMK 133 >gi|52841949|ref|YP_095748.1| deaminase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52629060|gb|AAU27801.1| deaminase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 141 Score = 39.7 bits (91), Expect = 0.65, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 29 PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ KD + +GR V P HAE++A+ +A + T YVTLEPC Sbjct: 18 PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133 CA ++ I+R+V D +G L L+ +I + +M++E Sbjct: 78 ------VMCAGLMVHARIKRLVFATRDFKTGAAGSMFNVLHALNHSVLIDEGIMQAE 128 >gi|312195561|ref|YP_004015622.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c] gi|311226897|gb|ADP79752.1| CMP/dCMP deaminase zinc-binding protein [Frankia sp. EuI1c] Length = 161 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Query: 69 GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y +LEPCS P C + + GI RVV +P + V +G + L+ G+ V Sbjct: 83 GATLYSSLEPCSARASRPRTCTELTLAAGIGRVVFAWREPALFVDCQGAELLAAAGVTV 141 >gi|220930799|ref|YP_002507708.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10] gi|220001127|gb|ACL77728.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10] Length = 152 Score = 39.7 bits (91), Expect = 0.66, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 + +FM AA++ ++ + V +IVK+G +I G HAE++AL++ Sbjct: 5 NEQFMLAAIQQAK--EAYKNGESPVGAVIVKNGEIIAYGCNRREEKLDVTSHAEIEALKK 62 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A +E G YVTLEPC P CA II+ I+ + + D +G Sbjct: 63 AAKEIGTWKLDGCDMYVTLEPC------PMCAGAIIQSRIKTLYIGAMDKKSGSAG 112 >gi|32455578|ref|NP_862061.1| putative reductase [Streptomyces lividans] gi|28883229|gb|AAO61162.1| putative reductase [Streptomyces lividans] gi|89357154|gb|ABD72320.1| pQC542.16 [Streptomyces lividans] Length = 226 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 46/202 (22%), Positives = 78/202 (38%), Gaps = 49/202 (24%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 R ++ L A S D + + ++ ++V +RA+SDAIL+G T+ D+P L Sbjct: 4 RPYVILSAATSVDGYLDDTSPDRLRLSNEADFDRVDQVRAESDAILIGATTMRRDNPRLL 63 Query: 209 C--------RLNGLQEHSPMRIILDPHFKLSLDSKI------------------IKTAL- 241 R+ + P+++ + LS D K ++T L Sbjct: 64 VNSEQRRAQRVAAGKPEYPLKVTVTASGDLSADLKFWHHGGQKLVLTVDGAAEKVRTTLD 123 Query: 242 -LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LA + V D VLAL L RG+ L+VEGG + Sbjct: 124 GLADTVSVGPEFDWVLALEE---------------------LGRRGIKRLMVEGGGTIHT 162 Query: 301 SFINSRLVDSIILYRSQIVIGE 322 + L D + L + +++G+ Sbjct: 163 QLMAQNLADEVHLAIAPLLVGQ 184 >gi|242794450|ref|XP_002482376.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500] gi|218718964|gb|EED18384.1| cytosine deaminase, putative [Talaromyces stipitatus ATCC 10500] Length = 186 Score = 39.7 bits (91), Expect = 0.67, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 52/117 (44%), Gaps = 21/117 (17%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAG 64 RFM AL + + T V C++V +G +IG G+ + G HAE A+EEA Sbjct: 21 RFMKEALLMGEKALAVGET--PVGCVLVLNGKIIGSGMNDTNRSMNGTRHAEFLAIEEAL 78 Query: 65 EEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGRG 115 + R YVT+EPC CA + + I RV C ++ R G G Sbjct: 79 QTYPRSIFREVDLYVTVEPCVM------CASLLRQYNICRVFFGCANE---RFGGTG 126 >gi|126175184|ref|YP_001051333.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS155] gi|125998389|gb|ABN62464.1| tRNA-adenosine deaminase [Shewanella baltica OS155] Length = 175 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L EAG E R AT YVTLEPC+ Sbjct: 35 VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLREAGRLVENYRLLDATLYVTLEPCAM 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 95 ------CAGAMVHSRIARVVFGARDEKTGAAG 120 >gi|153006601|ref|YP_001380926.1| CMP/dCMP deaminase [Anaeromyxobacter sp. Fw109-5] gi|152030174|gb|ABS27942.1| CMP/dCMP deaminase zinc-binding [Anaeromyxobacter sp. Fw109-5] Length = 150 Score = 39.7 bits (91), Expect = 0.68, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V + V +G V+GRG A + HAE+ A+++A G T YVTLEPC+ Sbjct: 19 VGAVAVFEGRVVGRGANAREAAHDPTAHAELLAIQDAARALGRWRLTGVTVYVTLEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 CA ++ I R+V DP Sbjct: 79 ------CAGAMVLARIDRLVYAASDP 98 >gi|160936895|ref|ZP_02084259.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC BAA-613] gi|158440085|gb|EDP17832.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 39.7 bits (91), Expect = 0.69, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 17/122 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D FM ALR ++ + + C+IV+ +I RG HAE+ ++++ Sbjct: 95 DEGFMREALRQAQKAAAIGDV--PIGCVIVRGDKIIARGYNRRNADKSVLSHAEIISIKK 152 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC P CA I++ I R+ V +P +G L Sbjct: 153 ACKKIGDWRLEDCTMYVTLEPC------PMCAGAIVQARIPRIAVGCMNPKAGCAGSVLD 206 Query: 118 WL 119 L Sbjct: 207 ML 208 >gi|304558173|gb|ADM40837.1| tRNA-specific adenosine-34 deaminase [Edwardsiella tarda FL6-60] Length = 170 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEA 63 D+ +M AL+ + P A L++ D ++ R +T + HAE+ AL++ Sbjct: 6 DSDWMRHALQLAE-KARAQGEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQG 64 Query: 64 GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA ++ IRR+V D +G L Sbjct: 65 GAIMQNYRLLEATLYVTLEPCVM------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDV 118 Query: 119 LSQKGI 124 L G+ Sbjct: 119 LGHPGM 124 >gi|83591205|ref|YP_431214.1| CMP/dCMP deaminase, zinc-binding [Moorella thermoacetica ATCC 39073] gi|83574119|gb|ABC20671.1| CMP/dCMP deaminase, zinc-binding protein [Moorella thermoacetica ATCC 39073] Length = 135 Score = 39.7 bits (91), Expect = 0.70, Method: Compositional matrix adjust. Identities = 41/144 (28%), Positives = 56/144 (38%), Gaps = 41/144 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPH--------- 54 +D F+ A + + T +V ++VKD + G T Y G PH Sbjct: 3 KEWDEYFLDIAFQVAS---RSTCNRLAVGAVVVKDKRIKG---TGYNGAPHGLPHCLEVG 56 Query: 55 -------------AEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 AE+ AL E EE +GAT YVT PC CA I++ GI+R+ Sbjct: 57 CLMEGEHCLRTIHAEINALLECSPEERQGATMYVTDYPCER------CALVIVQSGIKRL 110 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI 124 V R WL + GI Sbjct: 111 VY------ARPYHVNHDWLLEAGI 128 >gi|238784197|ref|ZP_04628210.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970] gi|238714906|gb|EEQ06905.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970] Length = 181 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 41 VGAVLVLDNQVIGEGWNRSICDSDPTAHAEIMALRQGGQVVQNYRLLDATLYVTLEPCVM 100 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G L L G+ Sbjct: 101 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLLDILRHPGM 137 >gi|268318039|ref|YP_003291758.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM 4252] gi|262335573|gb|ACY49370.1| CMP/dCMP deaminase zinc-binding protein [Rhodothermus marinus DSM 4252] Length = 158 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 46/102 (45%), Gaps = 17/102 (16%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA- 63 R+M AALR + V ++VKD ++GRG HAE+ A+ A Sbjct: 12 RWMEAALREA--EQAFEEGEVPVGAVVVKDDRIVGRGHNCVEQLKDPTAHAEMLAITAAC 69 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + RG T YVTLEPC P CA I+ + RVV Sbjct: 70 ATLDTKYLRGCTLYVTLEPC------PMCAGAIVWARLDRVV 105 >gi|42779100|ref|NP_976347.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Bacillus cereus ATCC 10987] gi|42735015|gb|AAS38955.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus ATCC 10987] Length = 166 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 17/119 (14%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ AT YVTLEPC P CA I+ ++RVV DP Sbjct: 55 HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 108 Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 +G + L+ + +V ++E E L + R + K+ K+ S++N Sbjct: 109 GGCAGTLMNLLTDERFNHQCEVVAGVLEEECGTLLTNFF-RALRKKRKAIKKLEKSKEN 166 >gi|21673220|ref|NP_661285.1| cytosine deaminase, putative [Chlorobium tepidum TLS] gi|21646303|gb|AAM71627.1| cytosine deaminase, putative [Chlorobium tepidum TLS] Length = 152 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 33/94 (35%), Positives = 43/94 (45%), Gaps = 15/94 (15%) Query: 29 PSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPC 79 P A ++ +G++IGRG T HAE+ AL A + G T VTLEPC Sbjct: 25 PVGAVVLDPNGLIIGRGYNQVETLSDATAHAEMIALTSAMATIGSKYLEGCTLAVTLEPC 84 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I+ I RVV DP + +G Sbjct: 85 ------PMCAGAIVLSKISRVVFGAWDPKMGAAG 112 >gi|261188372|ref|XP_002620601.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081] gi|239593201|gb|EEQ75782.1| cytosine deaminase [Ajellomyces dermatitidis SLH14081] gi|239609343|gb|EEQ86330.1| cytosine deaminase [Ajellomyces dermatitidis ER-3] gi|327354444|gb|EGE83301.1| cytosine deaminase [Ajellomyces dermatitidis ATCC 18188] Length = 143 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 48/106 (45%), Gaps = 18/106 (16%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P ACL+ +DG ++GRG V H E+ ALE +G GAT Y T+ PC Sbjct: 25 PIGACLVARDGKILGRGHNMRVQKGSATLHGEIAALENSGRLPASTYVGATMYTTMSPCD 84 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 C + ++RVVV + G G Q+L +G+ V Sbjct: 85 M------CTGACVLYKLKRVVV---GENTTFMG-GEQYLINRGVEV 120 >gi|183982058|ref|YP_001850349.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium marinum M] gi|183175384|gb|ACC40494.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium marinum M] Length = 260 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 71/176 (40%), Gaps = 26/176 (14%) Query: 185 LLRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 LLR +D ILVG GTV + E R Q P I +L D + Sbjct: 75 LLRELADVILVGAGTVRIEGYSGAQLGVAERQQRQARGQSEVPQLAIATNSGQLDRDLPV 134 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNIN----IIYCDCRDLKK-----LLTILVGRGV 287 + P+++ A+ ++ + ++ C +D + LL L GRG+ Sbjct: 135 FTRTEVPPLVLTA-----AAAVYDTRRRLTGLAEVVDCSGKDPHRVDEGLLLARLAGRGM 189 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE--GYLEKNFMCV 341 +L EGG + S I L+D + L + +V+ GG+P + G L+ C Sbjct: 190 RRILTEGGPTLFGSLIEQDLLDELCLTIAPVVV--GGLPRRIASGPGQLQTRMHCA 243 >gi|56418551|ref|YP_145869.1| hypothetical protein GK0016 [Geobacillus kaustophilus HTA426] gi|261417515|ref|YP_003251197.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61] gi|297528391|ref|YP_003669666.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3] gi|319765173|ref|YP_004130674.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52] gi|56378393|dbj|BAD74301.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261373972|gb|ACX76715.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61] gi|297251643|gb|ADI25089.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3] gi|317110039|gb|ADU92531.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52] Length = 165 Score = 39.7 bits (91), Expect = 0.71, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV+DG VI R T HAE+ A++EA AT YVTLEPC+ Sbjct: 26 IGAVIVQDGRVIARAHNLRETEQRAIAHAEILAIDEACRATGSWRLERATLYVTLEPCAM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA I+ I RVV DP +G + L + +V ++ E Sbjct: 86 ------CAGAIVLSRIERVVFGAFDPKGGCAGTLMNLLQESRFNHQVKVVSGVLADECGS 139 Query: 137 FLHAYLTRQVEKRSHI 152 L + R E++ ++ Sbjct: 140 LLSQFFRRLREQKRNV 155 >gi|313901005|ref|ZP_07834493.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] gi|312953963|gb|EFR35643.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] Length = 164 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 G T Y HAE+ A+ + + +G + YV+L PC+ CA+ II+ GI R+V Sbjct: 68 GNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121 Query: 105 D 105 D Sbjct: 122 D 122 >gi|313885505|ref|ZP_07819255.1| cytidine and deoxycytidylate deaminase zinc-binding region [Eremococcus coleocola ACS-139-V-Col8] gi|312619235|gb|EFR30674.1| cytidine and deoxycytidylate deaminase zinc-binding region [Eremococcus coleocola ACS-139-V-Col8] Length = 175 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V G ++GRG + HAE+ A+E A ++ A+ YVTLEPC Sbjct: 37 IGAVLVYQGQIVGRGHNVRESQERALGHAELMAIETANQQLGHWRLEEASLYVTLEPC-- 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 P CA ++ C I+ V+ D Sbjct: 95 ----PMCAGALMNCRIKEVIYGASD 115 >gi|332654745|ref|ZP_08420487.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae bacterium D16] gi|332516088|gb|EGJ45696.1| cytidine/deoxycytidylate deaminase family protein [Ruminococcaceae bacterium D16] Length = 152 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 39/79 (49%), Gaps = 15/79 (18%) Query: 31 VACLIVKDGIVIGRGVT---AYG-GCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81 V C+IVKDG ++G G +G HAE++A+ +A G T YVTLEPC Sbjct: 25 VGCVIVKDGKIVGEGRNRREEHGDATAHAELEAIRDACARLGSWRLHGCTLYVTLEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRV 100 P CA II I V Sbjct: 83 ----PMCAGGIINSRIETV 97 >gi|206889673|ref|YP_002249189.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741611|gb|ACI20668.1| cytosine deaminase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 154 Score = 39.7 bits (91), Expect = 0.73, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 17/116 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M ++D FM AL+ + V LIV +G +I + T + HAE Sbjct: 1 MDQLAYDEYFMKEALKEA--EKAYEKGEIPVGALIVVNGEIISKAHNIKETTFDPTAHAE 58 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + A+ EA AT YVT EPC C+ I+ I+R+V +DP Sbjct: 59 ILAIREAARILGAWRLTDATLYVTKEPCIM------CSGAIVNSRIKRLVYGCNDP 108 >gi|317120920|ref|YP_004100923.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885] gi|315590900|gb|ADU50196.1| tRNA-adenosine deaminase [Thermaerobacter marianensis DSM 12885] Length = 207 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEA-----GEEARGATAYVTLEPCSH 81 V + V DG +I RG + G P HAE+ L EA G G T YVTLEPC Sbjct: 67 VGAVAVHDGRIIARGHNLRERLGDPTAHAEILVLREAAARLGGWRLEGVTLYVTLEPC-- 124 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I+ + R+V DP +G Sbjct: 125 ----PMCAGAIVLARVPRLVYGAPDPKAGAAG 152 >gi|307610417|emb|CBW99987.1| hypothetical protein LPW_17441 [Legionella pneumophila 130b] Length = 147 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%) Query: 29 PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ KD + +GR V P HAE++A+ +A + T YVTLEPC Sbjct: 24 PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESEGKI 136 CA ++ I+R+V D +G L L+ +I + +M++E Sbjct: 84 ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAECSQ 137 Query: 137 FLHAYLTR 144 L + + Sbjct: 138 LLSDFFRK 145 >gi|148359260|ref|YP_001250467.1| deaminase [Legionella pneumophila str. Corby] gi|296107307|ref|YP_003619007.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy] gi|148281033|gb|ABQ55121.1| deaminase [Legionella pneumophila str. Corby] gi|295649208|gb|ADG25055.1| Cytosine/adenosine deaminase [Legionella pneumophila 2300/99 Alcoy] Length = 147 Score = 39.7 bits (91), Expect = 0.74, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 29 PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ KD + +GR V P HAE++A+ +A + T YVTLEPC Sbjct: 24 PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133 CA ++ I+R+V D +G L L+ +I + +M++E Sbjct: 84 ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAE 134 >gi|293390603|ref|ZP_06634937.1| tRNA-specific adenosine deaminase [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951137|gb|EFE01256.1| tRNA-specific adenosine deaminase [Aggregatibacter actinomycetemcomitans D7S-1] Length = 175 Score = 39.7 bits (91), Expect = 0.75, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 + D +FM AL + L P A L+ + G +IG G + HAE+ A Sbjct: 6 THLDEKFMRHALMLAGKAEALGEI-PVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAEIVA 64 Query: 60 LEEAGEEARGA-----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + G++ + T YVTLEPC+ CA I+ I+R+V D Sbjct: 65 LRQGGQKLQNYRLLNITLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110 >gi|328950667|ref|YP_004368002.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] gi|328450991|gb|AEB11892.1| tRNA(Ile)-lysidine synthase [Marinithermus hydrothermalis DSM 14884] Length = 528 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 15/85 (17%) Query: 31 VACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA----GEEA-RGATAYVTLEPCSH 81 + ++V+DG V+ A HAE+ AL A GE+ GAT YVTLEPC Sbjct: 406 IGAVLVRDGAVLAEAANAVEASRDATAHAELLALRTALRRVGEKVLPGATLYVTLEPC-- 463 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDD 106 P C I+E + RVV V++ Sbjct: 464 ----PMCYGAILEARVARVVYGVEN 484 >gi|327313504|ref|YP_004328941.1| putative dCMP deaminase [Prevotella denticola F0289] gi|326946111|gb|AEA21996.1| putative dCMP deaminase [Prevotella denticola F0289] Length = 170 Score = 39.7 bits (91), Expect = 0.76, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 52/130 (40%), Gaps = 35/130 (26%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP-------------------HAEVQA- 59 W V L+VK+ ++I G Y G P HAE A Sbjct: 35 WAENSYCKRRQVGALVVKNKMIISDG---YNGTPSGFENVCEDEAGVTKSYVLHAEANAI 91 Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 L +G + G+T YVT PC CA+ II+ GI RVV R++ G+ Sbjct: 92 TKLARSGNNSEGSTLYVTASPC------IECAKLIIQAGICRVVYA---EKYRLTD-GID 141 Query: 118 WLSQKGIIVD 127 L + GI V+ Sbjct: 142 LLKRAGIEVE 151 >gi|332295153|ref|YP_004437076.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178256|gb|AEE13945.1| CMP/dCMP deaminase zinc-binding protein [Thermodesulfobium narugense DSM 14796] Length = 154 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 11/60 (18%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A+++A + +G+T Y +LEPC CA IIEC I+ V+ CV + Sbjct: 51 HAEILAIKKAIQRYNRWYIQGSTIYCSLEPC------LMCAGAIIECKIKNVIFCVSSKN 104 >gi|323143534|ref|ZP_08078213.1| cytidine and deoxycytidylate deaminase zinc-binding region [Succinatimonas hippei YIT 12066] gi|322416695|gb|EFY07350.1| cytidine and deoxycytidylate deaminase zinc-binding region [Succinatimonas hippei YIT 12066] Length = 175 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 16/116 (13%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIG--RGVTAYGGCPHAEVQALEE 62 D FMS AL +R W +G +V K+ + +G R + C HAE+ AL Sbjct: 6 DEYFMSLALSQARHAWDLGEIPVG-AVIVNAAKEIVSVGCNRTIIDNDPCAHAEIVALRN 64 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AG+ T YVTLEPC C+ +I ++R+V DP G Sbjct: 65 AGKILDTYRLTDLTMYVTLEPCCM------CSGALIHARLKRLVYGAKDPKTGACG 114 >gi|282162767|ref|YP_003355152.1| hypothetical protein MCP_0097 [Methanocella paludicola SANAE] gi|282155081|dbj|BAI60169.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 162 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 32/83 (38%), Positives = 38/83 (45%), Gaps = 13/83 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G GAT Y T +PC C + II C I RVV PD Sbjct: 80 HAEQNAIIQAAIHGVSIEGATVYCTHQPCI------LCTKMIINCKINRVVFQNGYPD-- 131 Query: 111 VSGRGLQWLSQKGIIVDRMMESE 133 L++L Q GI V RM E Sbjct: 132 --EMSLKFLKQAGIDVLRMPSKE 152 >gi|224367573|ref|YP_002601736.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium autotrophicum HRM2] gi|223690289|gb|ACN13572.1| putative cytidine/deoxycytidylate deaminase [Desulfobacterium autotrophicum HRM2] Length = 181 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 36/114 (31%), Positives = 51/114 (44%), Gaps = 21/114 (18%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP----HAEVQ 58 DA +M AL + V +IV DG V+ +G A G P HAE++ Sbjct: 10 DAYYMELAL--ASAQKAFDQGEFPVGAVIVCDGRVVAQGHRVGTGALTGRPSEIDHAEMR 67 Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 AL+E G + GA + T+EPC C II GI+++V +DP Sbjct: 68 ALKELEGLPLGFDPAGAVIFSTMEPCLM------CFSAIILSGIKKIVYAYEDP 115 >gi|15964553|ref|NP_384906.1| putative deaminase protein [Sinorhizobium meliloti 1021] gi|307314743|ref|ZP_07594339.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C] gi|307320037|ref|ZP_07599458.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83] gi|15073731|emb|CAC45372.1| Putative tRNA-specific adenosine deaminase [Sinorhizobium meliloti 1021] gi|306894252|gb|EFN25017.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti AK83] gi|306898967|gb|EFN29613.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium meliloti BL225C] Length = 149 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 53/122 (43%), Gaps = 17/122 (13%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63 ARFM AAL+ +R + ++V DG +I R HAE++A+ A Sbjct: 5 ARFMQAALQEARKAAARGEV--PIGAVVVLDGKMIAAAGNRTRELNDITAHAEIEAIRHA 62 Query: 64 G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E GA YVTLEPC+ CA I IRR+ +DP G+++ Sbjct: 63 AAAVGDERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDNGVRF 116 Query: 119 LS 120 + Sbjct: 117 YA 118 >gi|319427113|gb|ADV55187.1| CMP/dCMP deaminase zinc-binding protein [Shewanella putrefaciens 200] Length = 169 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 17/122 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M + D +M A++ + + V ++VKDG I G ++ + HAE Sbjct: 1 MEQTELDEYWMQVAMQMAE--KAEAAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAE 58 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + L AG++ AT Y+TLEPC+ CA ++ I RVV D Sbjct: 59 ILCLRSAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGA 112 Query: 112 SG 113 +G Sbjct: 113 AG 114 >gi|330933338|ref|XP_003304140.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1] gi|311319472|gb|EFQ87774.1| hypothetical protein PTT_16586 [Pyrenophora teres f. teres 0-1] Length = 293 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 25/145 (17%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 ++ FM A+ + + L S V C+ VKDG +IGRG+ G HAE A+ Sbjct: 66 AYHEGFMREAIAMAE--LALKSDETPVGCVFVKDGHIIGRGMNETNRTLNGTRHAEFVAI 123 Query: 61 EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112 AG ++ + YVT+EPC CA + + GIR V C ++ R Sbjct: 124 --AGILSKHPISILNETDLYVTVEPCVM------CASMLRQYGIRAVYFGCWNE---RFG 172 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137 G G VD+ G IF Sbjct: 173 GTGGVLNIHSDPSVDKPYPVTGGIF 197 >gi|301090647|ref|XP_002895529.1| deoxycytidylate deaminase [Phytophthora infestans T30-4] gi|262097843|gb|EEY55895.1| deoxycytidylate deaminase [Phytophthora infestans T30-4] Length = 122 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 12/82 (14%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L + + +G + YV L PC+ CA+ II+ GI RVV D Sbjct: 33 TKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQSGIARVVYYSD 86 Query: 106 DPDVRVSGR-----GLQWLSQK 122 + S R G+Q+ K Sbjct: 87 NWKFVASRRLLDMAGVQYTQHK 108 >gi|239623208|ref|ZP_04666239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522174|gb|EEQ62040.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 164 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 58/146 (39%), Gaps = 44/146 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 ++D FM AL G S +PS AC++ +D ++ G + GC Sbjct: 10 TWDEYFMGVALL-----SGRRSKDPSTQVGACIVSQDNKILSMGYNGFPKGCSDDEFPWG 64 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 H+E+ A L G G+ YVTL PC+ CA+ II+ Sbjct: 65 KEKQEEDPYNSKYFYSTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQA 118 Query: 96 GIRRVVVCVDD----PDVRVSGRGLQ 117 GI+ ++ D P VR S R L Sbjct: 119 GIKTIIYGEDKYAETPAVRASKRMLN 144 >gi|145224494|ref|YP_001135172.1| hypothetical protein Mflv_3913 [Mycobacterium gilvum PYR-GCK] gi|315444825|ref|YP_004077704.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp. Spyr1] gi|145216980|gb|ABP46384.1| bifunctional deaminase-reductase domain protein [Mycobacterium gilvum PYR-GCK] gi|315263128|gb|ADT99869.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp. Spyr1] Length = 257 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 14/151 (9%) Query: 186 LRAQSDAILVGIGTVLADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 LR +D I+VG TV ++D L + G E P+ +L +L D+K+ Sbjct: 72 LRELADVIVVGAQTVRSEDYSGVRLSASARLARQQRGQSEVPPI-AVLTRSGRLDRDAKL 130 Query: 237 IKTALLAPVIIVTEN--DDP--VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + P+I+ + DD +L + + D D + LT+L RG+ +L Sbjct: 131 FTRTDVPPLILTSTRALDDTRRLLGSVAEVLDASGAQPDSVDPAQALTLLAERGLRRVLT 190 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 EGG + F + LVD + + + +++G G Sbjct: 191 EGGPGILGMFTDDDLVDELCVTVAPLLLGGG 221 >gi|123441377|ref|YP_001005364.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122088338|emb|CAL11129.1| putative zinc-binding protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 161 Score = 39.7 bits (91), Expect = 0.80, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 19 VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 79 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 115 >gi|54294609|ref|YP_127024.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens] gi|53754441|emb|CAH15925.1| hypothetical protein lpl1685 [Legionella pneumophila str. Lens] Length = 149 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 18/128 (14%) Query: 29 PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ KD + +GR V P HAE++A+ +A + T YVTLEPC Sbjct: 26 PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 85 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESEGKI 136 CA ++ I+R+V D +G L L+ +I + +M++E Sbjct: 86 ------VMCAGLMVHARIKRLVFATRDFKAGAAGSIFNVLHALNHSVLIDEGIMQAECSQ 139 Query: 137 FLHAYLTR 144 L + + Sbjct: 140 LLSDFFRK 147 >gi|89094120|ref|ZP_01167063.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92] gi|89081595|gb|EAR60824.1| hypothetical protein MED92_16295 [Oceanospirillum sp. MED92] Length = 168 Score = 39.7 bits (91), Expect = 0.81, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 17/136 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M S D +M AL + L V L+V DG V+G G ++ HAE Sbjct: 1 MDTSKTDLHWMERALELADRAEQLNEV--PVGALVVLDGEVVGEGWNHPISGNDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL A ++ GA +VT+EPC+ C+ I+ I+RV+ + Sbjct: 59 MMALRAAAQKVGNYRLVGAELFVTIEPCTM------CSGAIVHARIKRVIYGATEAKSGA 112 Query: 112 SGRGLQWLSQKGIIVD 127 Q SQ I D Sbjct: 113 VDSNCQLFSQPWINHD 128 >gi|302873177|ref|YP_003841810.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B] gi|307688659|ref|ZP_07631105.1| CMP/dCMP deaminase zinc-binding protein [Clostridium cellulovorans 743B] gi|302576034|gb|ADL50046.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulovorans 743B] Length = 169 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 20/94 (21%) Query: 27 TNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEE----------ARGATA 72 T P A ++ DG ++ +G T HAEV A+ +AG + T Sbjct: 24 TYPIGAVIVDDDGNIVSKGRNRVFTESDCTAHAEVDAIRKAGHKLLDIPNKRFVKNNLTL 83 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 Y T EPC P C I+ GI+RVV DD Sbjct: 84 YTTCEPC------PMCTCTILLSGIKRVVWAADD 111 >gi|188584656|ref|YP_001916201.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349343|gb|ACB83613.1| tRNA-adenosine deaminase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 158 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55 MP ++ D +M A+ ++ + + +IVKD +I G T+ HA Sbjct: 1 MPSHNNTDKYWMQQAIDQAK--LAYNKGEVPIGAVIVKDEQLIATGFNKRETSQDATSHA 58 Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 E+ A++ A G T YVT+EPC P CA I++ I ++V +DP Sbjct: 59 EIIAIQSACNYLGGWRLLDCTLYVTIEPC------PMCAGAILQSRITKLVFGTEDP 109 >gi|54297635|ref|YP_124004.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris] gi|53751420|emb|CAH12838.1| hypothetical protein lpp1686 [Legionella pneumophila str. Paris] Length = 149 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 18/117 (15%) Query: 29 PSVACLIVKDGIV--IGRGVTAYGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ KD + +GR V P HAE++A+ +A + T YVTLEPC Sbjct: 26 PVGAVLVSKDNQLLGVGRNVIEKSHDPSDHAEIRAIRQASRKLNNHRLLDTTLYVTLEPC 85 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG---RGLQWLSQKGIIVDRMMESE 133 CA ++ I+R+V D +G L L+ +I + +M++E Sbjct: 86 ------VMCAGLMVHARIKRLVFATRDFKAGAAGSMFNVLHALNHSVLIDEGIMQAE 136 >gi|301051758|ref|YP_003789969.1| putative cytidine/deoxycytidylate deaminase family protein [Bacillus anthracis CI] gi|300373927|gb|ADK02831.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus cereus biovar anthracis str. CI] Length = 166 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV +G VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISAAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ + RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVNRVVYGAGDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ K+ S +N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKKLEKSNEN 166 >gi|296819611|ref|XP_002849875.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480] gi|238840328|gb|EEQ29990.1| tRNA specific adenosine deaminase [Arthroderma otae CBS 113480] Length = 190 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65 FM AL+ + L + V C++V G VIG G+ + G HAE A+EEA Sbjct: 14 FMKMALKMA--ETALAAGETPVGCVLVNKGRVIGSGMNDTNKSLNGTRHAEFLAIEEALR 71 Query: 66 EA-----RGATAYVTLEPC 79 R YVT+EPC Sbjct: 72 SHPRSIFRETDLYVTVEPC 90 >gi|229917437|ref|YP_002886083.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b] gi|229468866|gb|ACQ70638.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b] Length = 166 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D RFM A+ ++ + + C+IVK VI G T HAE+ A+E Sbjct: 4 DERFMQLAIEEAKKAEAIGEV--PIGCVIVKGDQVIATGHNRRETDRLAAAHAEMIAIET 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A E YVTLEPC P CA I+ ++RV+ DP Sbjct: 62 ANETLGNWRLEDCELYVTLEPC------PMCAGAIVLSRVKRVIFGAHDP 105 >gi|307245435|ref|ZP_07527523.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254389|ref|ZP_07536227.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258848|ref|ZP_07540580.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853776|gb|EFM85993.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862688|gb|EFM94644.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867199|gb|EFM99055.1| tRNA-specific adenosine deaminase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 196 Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 + +S D FM AL + + P A L+ ++G +IG G + HAE Sbjct: 34 LTISEQDIHFMRYALELADRAEAIGEI-PVGAVLVDQEGNIIGEGWNQVIQLSDPSAHAE 92 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + A+ +AG+ R T Y TLEPC+ CA I+ +RR+V D Sbjct: 93 MLAIRQAGKVQRNYRLLDCTLYATLEPCTM------CAGAILHSRLRRLVFGASD 141 >gi|333025914|ref|ZP_08453978.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071] gi|332745766|gb|EGJ76207.1| putative cytidine/deoxycytidine deaminase [Streptomyces sp. Tu6071] Length = 163 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 20/102 (19%) Query: 54 HAEVQALEEAGE---EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAEV AL A E R G T VTLEPC P CA + + + RVV DP Sbjct: 67 HAEVLALRRAAAVRGEWRLTGCTLVVTLEPC------PMCAGALTQSRVERVVYGARDP- 119 Query: 109 VRVSGRGLQW-------LSQKGIIVDRMMESEGKIFLHAYLT 143 + G QW L+ + +V+ ++ E L A+ T Sbjct: 120 -KAGAAGSQWDLLRDRRLNHRAEVVEGVLAPESTALLDAFFT 160 >gi|167623310|ref|YP_001673604.1| zinc-binding CMP/dCMP deaminase [Shewanella halifaxensis HAW-EB4] gi|167353332|gb|ABZ75945.1| CMP/dCMP deaminase zinc-binding [Shewanella halifaxensis HAW-EB4] Length = 163 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 55/129 (42%), Gaps = 20/129 (15%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG V+ G G HAE+Q L +AG+ + T YVTLEPC+ Sbjct: 19 VGAVLVKDGEVLSAGFNFSIGLHDPSAHAEMQCLRQAGQIMQNYRLLDTTLYVTLEPCA- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA I+ I R+V D +G + + + ++ESE Sbjct: 78 -----MCAGAIVHSRIGRLVFGAKDEKTGAAGTVIDIVRHSAFNHQVEVSSGVLESECSE 132 Query: 137 FLHAYLTRQ 145 L A+ R+ Sbjct: 133 QLSAFFKRR 141 >gi|167520965|ref|XP_001744821.1| hypothetical protein [Monosiga brevicollis MX1] gi|163776435|gb|EDQ90054.1| predicted protein [Monosiga brevicollis MX1] Length = 143 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 31/103 (30%) Query: 28 NPSVACLIVK-DGIVIGRGVTAYG-GCP----------------------HAEVQALEEA 63 N V C I+ DGIV+ G + GC HAE+ A+ Sbjct: 27 NTQVGCTIINPDGIVVSMGYNGFPIGCSDQELPWQKHSANPLETKFPYVCHAEMNAILNT 86 Query: 64 GEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 +E+ RG T Y TL PC+ CA+ II+ GI VV D Sbjct: 87 NDESVRGCTLYATLFPCNE------CAKMIIQAGIVEVVYLCD 123 >gi|324503290|gb|ADY41431.1| Deoxycytidylate deaminase [Ascaris suum] Length = 284 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 7/63 (11%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L E +G+T Y L PC+ CA+ II+ GI VV D Sbjct: 173 TKYPFVCHAEMNAILNRNCESVKGSTIYTVLFPCNE------CAKLIIQAGISEVVYKRD 226 Query: 106 DPD 108 PD Sbjct: 227 KPD 229 >gi|261367117|ref|ZP_05980000.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM 15176] gi|282571240|gb|EFB76775.1| tRNA-specific adenosine deaminase [Subdoligranulum variabile DSM 15176] Length = 153 Score = 39.3 bits (90), Expect = 0.85, Method: Compositional matrix adjust. Identities = 43/158 (27%), Positives = 62/158 (39%), Gaps = 23/158 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D + M AL +R L V +I KDG ++ R HAE+ A++ Sbjct: 3 DEQLMQVALEEARIAAALGEV--PVGAVIAKDGEIVARAHNLRERGKNATYHAELLAIDA 60 Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G +VTLEPC P C+ II +RRVV DP G GL Sbjct: 61 ACKALGGWRLWQCELFVTLEPC------PMCSGAIINSRLRRVVYGARDPKAGCCG-GLT 113 Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 L + +I +++ + + L + EKR Sbjct: 114 DLFALPFNHHPVIEQGLLQEDAQALLQDFFVMLREKRK 151 >gi|325662866|ref|ZP_08151435.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470918|gb|EGC74147.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium 4_1_37FAA] Length = 163 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M A+R ++ L + C+IV +I RG HAE+ A+ + Sbjct: 4 DEKYMKEAIRQAKKAYALKEV--PIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAIRK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A + T YVTLEPC C+ I++ +++VVV +P +G Sbjct: 62 ASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 111 >gi|228937324|ref|ZP_04099972.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970210|ref|ZP_04130871.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228976780|ref|ZP_04137194.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407] gi|228782942|gb|EEM31106.1| hypothetical protein bthur0002_100 [Bacillus thuringiensis Bt407] gi|228789511|gb|EEM37429.1| hypothetical protein bthur0003_100 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228822349|gb|EEM68329.1| hypothetical protein bthur0008_110 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937814|gb|AEA13710.1| cytosine deaminase [Bacillus thuringiensis serovar chinensis CT-43] Length = 166 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|255084043|ref|XP_002508596.1| ytidine and deoxycytidylated deaminase zinc-binding protein [Micromonas sp. RCC299] gi|226523873|gb|ACO69854.1| ytidine and deoxycytidylated deaminase zinc-binding protein [Micromonas sp. RCC299] Length = 443 Score = 39.3 bits (90), Expect = 0.86, Method: Compositional matrix adjust. Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 7/49 (14%) Query: 54 HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE+ A + + + GAT YVT+ PC+ CA+ II+ GIR VV Sbjct: 226 HAEMNAIMNKNSQSLHGATVYVTMYPCNE------CAKLIIQSGIREVV 268 >gi|297170608|gb|ADI21634.1| cytosine/adenosine deaminases [uncultured myxobacterium HF0130_06F04] Length = 159 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 49/116 (42%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M AA F+ V L++ + V+GRG T + HAE+ A+ E Sbjct: 4 DESWMQAA--FAEAEKARALGEVPVGALVIYEDRVVGRGFNRRETDHDPLAHAEILAIGE 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A + G YVTLEPC P CA I+ + R+V DP +G Sbjct: 62 AAKTLGRWRLSGCELYVTLEPC------PMCAGAIVNSRLDRLVFGATDPRAGAAG 111 >gi|318062198|ref|ZP_07980919.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actG] gi|318079391|ref|ZP_07986723.1| cytidine/deoxycytidine deaminase [Streptomyces sp. SA3_actF] Length = 163 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 20/102 (19%) Query: 54 HAEVQALEEAGE---EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAEV AL A E R G T VTLEPC P CA + + + RVV DP Sbjct: 67 HAEVLALRRAAAVRGEWRLTGCTLVVTLEPC------PMCAGALTQSRVERVVYGARDP- 119 Query: 109 VRVSGRGLQW-------LSQKGIIVDRMMESEGKIFLHAYLT 143 + G QW L+ + +V+ ++ E L A+ T Sbjct: 120 -KAGAAGSQWDLLRDRRLNHRAEVVEGVLAPESTALLDAFFT 160 >gi|291287100|ref|YP_003503916.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290884260|gb|ADD67960.1| CMP/dCMP deaminase zinc-binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 158 Score = 39.3 bits (90), Expect = 0.87, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + ++V +G VIGRG + HAE+ A+E+A + T YVTLEPC Sbjct: 30 IGAVVVSEGAVIGRGSNKKNSGKSALNHAEIIAIEDASSKIGDWRLDECTLYVTLEPC-- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 CA II IR V+ +P Sbjct: 88 ----LMCAGAIIHARIRNVIFGTTEP 109 >gi|283131456|dbj|BAI63455.1| tRNA-specific adenosine deaminase [Streptococcus dysgalactiae subsp. equisimilis] Length = 183 Score = 39.3 bits (90), Expect = 0.88, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVKDG +IGRG + HAE+ A+ EA Sbjct: 19 FMQEALKEA--EKSLQKAEIPIGCVIVKDGEIIGRGHNVREESNQAIMHAEMMAINEANA 76 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 77 HEGNWRLLDTTMFVTIEPC 95 >gi|301169624|emb|CBW29225.1| tRNA-specific adenosine deaminase [Haemophilus influenzae 10810] Length = 173 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 34/112 (30%), Positives = 47/112 (41%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S FD + M AL + L P A L+ G +IG G + HAE+ A Sbjct: 8 SEFDEKMMRYALELADKAEALGEI-PVGAVLVDDAGNIIGEGWNLSIVQSDPTAHAEIIA 66 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + + +T YVTLEPC+ CA I+ I+R+V D Sbjct: 67 LRNGAKNIQNYRLLNSTLYVTLEPCTM------CAGAILHSRIKRLVFGASD 112 >gi|228905818|ref|ZP_04069717.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200] gi|228853826|gb|EEM98584.1| hypothetical protein bthur0013_110 [Bacillus thuringiensis IBL 200] Length = 166 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A++EA ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVTGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|332162680|ref|YP_004299257.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666910|gb|ADZ43554.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860305|emb|CBX70619.1| tRNA-specific adenosine deaminase [Yersinia enterocolitica W22703] Length = 196 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 54 VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 113 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 114 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 150 >gi|323704821|ref|ZP_08116398.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] gi|323535747|gb|EGB25521.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] Length = 172 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G + AT YV+ PCS CA+ II GI+RVV D PD Sbjct: 101 HAEQNAIIQAALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD-- 152 Query: 111 VSGRGLQWLSQKGIIVDRM 129 ++L + + V +M Sbjct: 153 --NLSFEYLKEASVEVVKM 169 >gi|254438319|ref|ZP_05051813.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Octadecabacter antarcticus 307] gi|198253765|gb|EDY78079.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Octadecabacter antarcticus 307] Length = 509 Score = 39.3 bits (90), Expect = 0.89, Method: Compositional matrix adjust. Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 9/59 (15%) Query: 46 VTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 +T YG HAE+ ++ +A G +GAT +VT PC + CA+ II GI R+V Sbjct: 366 ITEYGRMVHAEMNSISDAARLGRRIQGATMHVTTFPCHN------CAKHIIAAGISRLV 418 >gi|285018425|ref|YP_003376136.1| cytidine / deoxycytidylate deaminase [Xanthomonas albilineans GPE PC73] gi|283473643|emb|CBA16146.1| putative cytidine / deoxycytidylate deaminase protein [Xanthomonas albilineans] Length = 165 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 48/116 (41%), Gaps = 15/116 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D R+M AL + P A L+ + V+G G + + HAE+ AL + Sbjct: 11 DERWMRHALALAERAEREFDEIPVGAVLVSAEDAVLGEGWNLNIAEHDPSAHAEIVALRQ 70 Query: 63 AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AG G+T YVTLEPC+ CA ++ + +V DP G Sbjct: 71 AGRRLGNHRLPGSTLYVTLEPCAM------CAMALVHARVAELVYAAADPKTGACG 120 >gi|50086283|ref|YP_047793.1| putative cytidine / deoxycytidylate deaminase family protein [Acinetobacter sp. ADP1] gi|49532259|emb|CAG69971.1| putative cytidine / deoxycytidylate deaminase family protein [Acinetobacter sp. ADP1] Length = 519 Score = 39.3 bits (90), Expect = 0.90, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 9/71 (12%) Query: 44 RGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 + +T YG HAE+ AL + +GAT +VT PC + CA+ II GI +V Sbjct: 361 KKITEYGRVVHAEMDALLSCSRSNISTQGATLFVTTFPCHN------CAKHIISAGIEKV 414 Query: 101 VVCVDDPDVRV 111 V P + Sbjct: 415 VFVEPYPKSKA 425 >gi|311898589|dbj|BAJ30997.1| putative truncated riboflavin-specific deaminase/reductase [Kitasatospora setae KM-6054] Length = 100 Score = 39.3 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 30/56 (53%) Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 D D +L L RGV L+VEGG + F++ L D I L + +++G+ G P Sbjct: 6 DTVDFGLMLEDLAARGVQRLMVEGGGQIHTQFLSLGLADEIHLAVAPLLVGDAGAP 61 >gi|284036841|ref|YP_003386771.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74] gi|283816134|gb|ADB37972.1| CMP/dCMP deaminase zinc-binding protein [Spirosoma linguale DSM 74] Length = 186 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ A G E G+T YVTL PC CA+ I I RVV + + Sbjct: 93 HAEQNAILYAAKNGSEIEGSTIYVTLSPCIA------CARIIYSMKIARVVFLNSYAEYK 146 Query: 111 --VSGRGLQWLSQKGIIVDRMMESEG 134 S G+ +L + G+ V+R + S G Sbjct: 147 GIPSDEGVDFLRRFGVTVERYVSSSG 172 >gi|229188306|ref|ZP_04315357.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876] gi|228595174|gb|EEK52942.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 10876] Length = 166 Score = 39.3 bits (90), Expect = 0.91, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 16/109 (14%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ AT YVTLEPC P CA I+ ++RVV DP Sbjct: 55 HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 108 Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHI 152 +G + L+ + +V ++E E L ++ +KR I Sbjct: 109 GGCAGTLMNLLTDERFNHQCEVVSGVLEEECGTLLTSFFRELRKKRKAI 157 >gi|291569301|dbj|BAI91573.1| putative cytidine/deoxycytidylate deaminase [Arthrospira platensis NIES-39] Length = 157 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 16/117 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEV 57 P + + +M AL+ G P A ++ + G +I +G P HAE+ Sbjct: 3 PTYTTHSHWMQQALKLGA-AAGEAGEVPVGALIVNQQGKLIAQGENRRERDPDPTAHAEI 61 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AL +A + T YVTLEPC P CA I++ I +V VDDP Sbjct: 62 IALRQASQVLGDWHLNTCTLYVTLEPC------PMCAGAILQARIGLLVYGVDDPKT 112 >gi|169335874|ref|ZP_02863067.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM 17244] gi|169258612|gb|EDS72578.1| hypothetical protein ANASTE_02307 [Anaerofustis stercorihominis DSM 17244] Length = 145 Score = 39.3 bits (90), Expect = 0.92, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 40/100 (40%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81 V LIVKD +I + + HAE+ A+ EA G + YVTLEPC Sbjct: 21 VGALIVKDDKIISKAHNEVIKNNDPTAHAEILAIREACSILDSYNLSGCSIYVTLEPC-- 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA II I +VV D D G L Sbjct: 79 ----PMCAGAIINAKIDKVVYGAMDMDYGACGSKYNLLED 114 >gi|238918820|ref|YP_002932334.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella ictaluri 93-146] gi|238868388|gb|ACR68099.1| cytidine and deoxycytidylate deaminase family protein [Edwardsiella ictaluri 93-146] Length = 170 Score = 39.3 bits (90), Expect = 0.93, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 24/150 (16%) Query: 29 PSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCS 80 P A L++ D ++ R +T + HAE+ AL++ G + AT YVTLEPC Sbjct: 27 PVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQGGAVMQNYRLLEATLYVTLEPCV 86 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 CA ++ IRR+V D +G L L G+ + +E G + A Sbjct: 87 M------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDVLGHPGM--NHRIEVCGGVLADA 138 Query: 141 --------YLTRQVEKRSHITLKIAVSQDN 162 + R+ +KR+ + + D+ Sbjct: 139 CAAQLSDFFRQRRAQKRAERDARRSAHSDD 168 >gi|332186892|ref|ZP_08388634.1| ribD C-terminal domain protein [Sphingomonas sp. S17] gi|332013225|gb|EGI55288.1| ribD C-terminal domain protein [Sphingomonas sp. S17] Length = 228 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 6/99 (6%) Query: 244 PVIIVTEND--DPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAV 298 P+++V D D LA R ++ I+ DL+ + IL GV +LLVEGG Sbjct: 99 PIVVVLTKDVADSHLA-GLRADGVSYIFAGAETIDLRAVPEILNRELGVKTLLVEGGGTA 157 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 F+ + L+D I + V G G PS G E N Sbjct: 158 NGEFLRAGLIDEISMALCPAVDGGAGAPSLFHSGDAEAN 196 >gi|210614123|ref|ZP_03290059.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787] gi|210150824|gb|EEA81832.1| hypothetical protein CLONEX_02272 [Clostridium nexile DSM 1787] Length = 162 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 42/141 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVA---CLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM A+ G+ S +PS C++ +D ++ G + GC Sbjct: 10 SWDEYFMGVAML-----SGMRSKDPSTQVGCCIVSQDNKILSMGYNGFPIGCSDDEFPWE 64 Query: 54 ---------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 H+E+ A L +G GA YV+L PC+ CA+ II+ GI Sbjct: 65 REGDDPLETKYLYSTHSELNAILNYSGGSLAGAKLYVSLFPCNE------CAKAIIQSGI 118 Query: 98 RRVVV----CVDDPDVRVSGR 114 R V+ D P V S R Sbjct: 119 REVIYDCDKYADTPSVIASKR 139 >gi|119775487|ref|YP_928227.1| cytidine/deoxycytidylate deaminase family protein [Shewanella amazonensis SB2B] gi|119767987|gb|ABM00558.1| tRNA-adenosine deaminase [Shewanella amazonensis SB2B] Length = 190 Score = 39.3 bits (90), Expect = 0.94, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V++G+VI G G HAE+Q L EAG T YVTLEPC+ Sbjct: 49 VGAVLVREGLVIATGYNHNIGLNDPSAHAEMQCLREAGRMLGNYRLLDTTLYVTLEPCAM 108 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I R+V D +G Sbjct: 109 ------CAGVMVHSRIERLVFGAKDEKTGAAG 134 >gi|318606786|emb|CBY28284.1| tRNA-specific adenosine-34 deaminase [Yersinia enterocolitica subsp. palearctica Y11] Length = 183 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 41 VGAILVLDNQVIGEGWNRPIRDNDPTAHAEIMALRQGGQVVQNYRLIDATLYVTLEPCVM 100 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 101 ------CAGAMVHSRIRRLVYGANDLKTGAAGSLVDILRHPGM 137 >gi|90416322|ref|ZP_01224254.1| cytidine/deoxycytidylate deaminase family protein [marine gamma proteobacterium HTCC2207] gi|90332047|gb|EAS47261.1| cytidine/deoxycytidylate deaminase family protein [marine gamma proteobacterium HTCC2207] Length = 160 Score = 39.3 bits (90), Expect = 0.95, Method: Compositional matrix adjust. Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 17/112 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 S D FM A+ + H V L+VK+G VIG G +T+ HAE+ A+ Sbjct: 2 SLDEEFMGRAMELA--HQAAAVGEVPVGALVVKEGRVIGEGYNQPITSCDPTGHAEIIAM 59 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A + G YVT+EPC+ C ++ I ++V +P Sbjct: 60 RNAAQTLGNYRLSGCDLYVTIEPCTM------CVGAMVHARIGKIVFGAKEP 105 >gi|229542244|ref|ZP_04431304.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1] gi|229326664|gb|EEN92339.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1] Length = 169 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 16/106 (15%) Query: 47 TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 T HAE+ A+E+A E A YVTLEPC P C+ +++ I+RVV Sbjct: 47 TTQRAAAHAELLAIEKACEVTGSWRLENAELYVTLEPC------PMCSGAVLQSRIKRVV 100 Query: 102 VCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 DP +G + L + + +V ++E+E L ++ Sbjct: 101 YGAKDPKAGCAGSLMNLLEDGRFNHRSEVVSGVLETECGELLRSFF 146 >gi|227820996|ref|YP_002824966.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium fredii NGR234] gi|227339995|gb|ACP24213.1| putative cytidine and deoxycytidylate deaminase [Sinorhizobium fredii NGR234] Length = 150 Score = 39.3 bits (90), Expect = 0.96, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 62/154 (40%), Gaps = 32/154 (20%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG---------RGVTAYGGCPHAEVQA 59 R+M AAL +R + ++V DG V+ R +TA HAE++A Sbjct: 7 RYMDAALDEARKAAARGEV--PIGAVVVLDGEVVAAAGNRTRELRDITA-----HAEIEA 59 Query: 60 LEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + +A E GA YVTLEPC+ CA I IRR+ +DP Sbjct: 60 IRQAAAAVGDERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVEN 113 Query: 115 GLQWLSQKGI-----IVDRMMESEGKIFLHAYLT 143 G+++ + + E E L A+ T Sbjct: 114 GVRFYGSPTCHHVPDVYSGLAEREAADLLRAFFT 147 >gi|308814577|ref|YP_003934851.1| dCMP deaminase [Shigella phage SP18] gi|308206169|gb|ADO19568.1| dCMP deaminase [Shigella phage SP18] Length = 193 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARMGSSIEGATMYVTLSPC------PDCAKAISQSGIKKLVYC 150 >gi|242058805|ref|XP_002458548.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor] gi|241930523|gb|EES03668.1| hypothetical protein SORBIDRAFT_03g035540 [Sorghum bicolor] Length = 228 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY------------ 49 S+D FM+ A + S +P+ ACL+ ++GI++G G + Sbjct: 69 SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123 Query: 50 ----GGCP---------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 G P HAEV A L A G YVT+ PC+ CA+ II+ Sbjct: 124 KKSANGNPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177 Query: 96 GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 G+ V+ V+ D V + LS GI V + +I Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGIKVRKHQPQMAQI 221 >gi|89898061|ref|YP_515171.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56] gi|89331433|dbj|BAE81026.1| cytosine/adenosine deaminases [Chlamydophila felis Fe/C-56] Length = 157 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 51/123 (41%), Gaps = 20/123 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D FM ALR +R V C+IVKD +I RG HAE+ + Sbjct: 6 DIFFMKQALREAR--QAYDEDEVPVGCVIVKDNKIIARGHNTIEKLQDPTAHAEILCIGA 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + Y TLEPC CA I + +RR+V PD+R+ G G Sbjct: 64 AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARVRRIVWAA--PDLRL-GAGGS 114 Query: 118 WLS 120 W++ Sbjct: 115 WIN 117 >gi|150019816|ref|YP_001312070.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB 8052] gi|149906281|gb|ABR37114.1| CMP/dCMP deaminase, zinc-binding [Clostridium beijerinckii NCIMB 8052] Length = 149 Score = 39.3 bits (90), Expect = 0.98, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V +IV D +IGR T HAE+ A++EA + A YVTLEPC Sbjct: 23 VGAVIVLDDKIIGRAHNLKETLNDSTAHAEILAIKEASKFIGDWRLNRAEMYVTLEPC-- 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA II+ I +V + + D+ G Sbjct: 81 ----PMCAGAIIQSRISKVYIGTFNKDMGACG 108 >gi|309778050|ref|ZP_07672990.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium 3_1_53] gi|308914187|gb|EFP59987.1| probable deoxycytidylate deaminase [Erysipelotrichaceae bacterium 3_1_53] Length = 164 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%) Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 G T Y HAE+ A+ + + +G + YV+L PC+ CA+ II+ GI R+V Sbjct: 68 GNTKYPYVVHAELNAILNSKHDLKGCSIYVSLFPCNE------CAKAIIQSGISRIVYES 121 Query: 105 D 105 D Sbjct: 122 D 122 >gi|56751392|ref|YP_172093.1| hypothetical protein syc1383_d [Synechococcus elongatus PCC 6301] gi|56686351|dbj|BAD79573.1| hypothetical protein [Synechococcus elongatus PCC 6301] Length = 161 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 15/104 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D RFM A+ SR + T C+I ++G +I G +T HAE+ A+ + Sbjct: 6 DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAEIAAIRQ 65 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 A + + G T Y + EPC P CA + + R+V Sbjct: 66 ACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLERLV 103 >gi|227356250|ref|ZP_03840639.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906] gi|227163714|gb|EEI48630.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906] Length = 176 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D +I +G + HAE+ AL + G+ + AT Y+TLEPC Sbjct: 29 VGAVLVADNKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA I+ ++RVV D +G + L G+ Sbjct: 88 -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125 >gi|188533151|ref|YP_001906948.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99] gi|188028193|emb|CAO96051.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99] Length = 186 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M AL+ +R W+ G V ++V DG VIG G + + HAE+ AL Sbjct: 26 DEYWMRHALQLARRAWNEG----EVPVGAVLVLDGQVIGEGWNRPIGHHDPTAHAEMMAL 81 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA ++ + R+V D +G Sbjct: 82 RQGGKVIENYRLMDTTLYVTLEPCVM------CAGAMVHGRVGRLVYGARDAKTGAAGSL 135 Query: 116 LQWLSQKGI 124 L L G+ Sbjct: 136 LDVLGHPGM 144 >gi|225028456|ref|ZP_03717648.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353] gi|224954206|gb|EEG35415.1| hypothetical protein EUBHAL_02730 [Eubacterium hallii DSM 3353] Length = 159 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 33/155 (21%) Query: 5 SFDARFMSAAL------RFSRWHVGLTSTNPSVACLIV-KDGIVIG----------RGV- 46 S+DA FM AL + + VG NP L + +G+ G +G Sbjct: 8 SWDAYFMGVALLSAQRSKDNNTQVGSCIVNPHNKILSMGYNGMPTGCNDDRMPWERKGTP 67 Query: 47 --TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 T Y HAE+ A L +G RGA Y TL PC+ C + II+ GI V+ Sbjct: 68 LDTKYLYVCHAELNAILNYSGGSLRGARIYTTLFPCNE------CTKAIIQAGITEVIYY 121 Query: 104 VD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 D D D ++ + + L GI R + EGK Sbjct: 122 SDKYADTDSTIAAKRM--LDMVGITY-RQYQKEGK 153 >gi|296117773|ref|ZP_06836357.1| riboflavin biosynthesis protein RibD protein [Corynebacterium ammoniagenes DSM 20306] gi|295969504|gb|EFG82745.1| riboflavin biosynthesis protein RibD protein [Corynebacterium ammoniagenes DSM 20306] Length = 251 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 6/133 (4%) Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR ++D I+VG GTV +D +P+ ++ + F + SK + A+ P Sbjct: 64 LRERADVIVVGSGTVSIEDYGGAQPTKERPTPAPIAVVTN-SFNVDPQSKFVTEAITPPF 122 Query: 246 IIVTEN--DDPVLA---LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I + + P A A ++ + I +++ L +G+ ++ EGG + Sbjct: 123 VIANDKSMNSPEYAEKREALKQAGVEFINSGTGSANEIVQALSAKGLNKIVCEGGPGLFG 182 Query: 301 SFINSRLVDSIIL 313 FI VD + L Sbjct: 183 LFIADHAVDQMYL 195 >gi|39934239|ref|NP_946515.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris CGA009] gi|192289765|ref|YP_001990370.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1] gi|39648087|emb|CAE26607.1| possible cytidine and deoxycytidylate deaminase [Rhodopseudomonas palustris CGA009] gi|192283514|gb|ACE99894.1| CMP/dCMP deaminase zinc-binding [Rhodopseudomonas palustris TIE-1] Length = 148 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81 + C+IV+DG+VI R +T HAE+ A+ EA E YVTLEPC+ Sbjct: 25 IGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIREAAAKLGSERLVDCDLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I IRR+ DP G+++ Q Sbjct: 85 ------CAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQ 118 >gi|295694717|ref|YP_003587955.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912] gi|295410319|gb|ADG04811.1| CMP/dCMP deaminase zinc-binding protein [Bacillus tusciae DSM 2912] Length = 174 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 17/126 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 MP + D ++M AL+ + + G P + ++V G ++G G HAE Sbjct: 1 MPDAPRDLQYMERALQLAA-YAGEMGEVP-IGAVVVAGGKILGEGCNLREMWNDPTAHAE 58 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +A G G T YVTLEPC+ C + + RVV DP Sbjct: 59 MVALRQAAQAVGGWRLSGTTLYVTLEPCAM------CVGAAVLARVERVVFGAPDPKAGA 112 Query: 112 SGRGLQ 117 G LQ Sbjct: 113 CGSVLQ 118 >gi|254823485|ref|ZP_05228486.1| CMP/dCMP deaminase, zinc-binding protein [Mycobacterium intracellulare ATCC 13950] Length = 143 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 16/125 (12%) Query: 29 PSVACLIVKDGIVIGRGVT--AYGGCP--HAEVQALEEAGEEA--RGATAYVTLEPCSHY 82 P A L DG+++GRG G P HAEV A AG + R TL PC + Sbjct: 19 PIGAALFTADGVLLGRGRNRRVQQGDPSLHAEVDAFRAAGRQRDYRSTVMVTTLSPCWY- 77 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 C+ + + I +VV + R G +WL+Q G+ V + + + A++ Sbjct: 78 -----CSGLVRQFNIGALVVG----ESRTFTGGHEWLAQHGVTVTVVDDPRCTQMMSAFI 128 Query: 143 TRQVE 147 E Sbjct: 129 AEHPE 133 >gi|304439146|ref|ZP_07399064.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372278|gb|EFM25866.1| tRNA-specific adenosine deaminase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 147 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V G V+G G T HAE++AL+ A + G Y TLEPC+ Sbjct: 19 VGAVVVLHGKVVGYGYNLKETLNDATEHAELRALKMAAKTLGTYHLEGTKMYTTLEPCA- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I ++++ P + +G L L ++G Sbjct: 78 -----MCAGAMILFRIDKLIIGAKSPRMGAAGSNLNILDREGF 115 >gi|283469850|emb|CAQ49061.1| tRNA-specific adenosine deaminase [Staphylococcus aureus subsp. aureus ST398] Length = 156 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 54/135 (40%), Gaps = 21/135 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ A+ ++ L + +I K VI R T HAE A+E Sbjct: 4 DIYFMTLAIEEAKKAARLGEV--PIGAVITKGDEVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC CA I+ I RVV DDP SG + Sbjct: 62 AAKVLGSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMN 115 Query: 118 WLSQKGI----IVDR 128 L Q IVD+ Sbjct: 116 LLQQSNFNHRAIVDK 130 >gi|269138128|ref|YP_003294828.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202] gi|267983788|gb|ACY83617.1| tRNA-specific adenosine deaminase [Edwardsiella tarda EIB202] Length = 180 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEVQALEEA 63 D+ +M AL+ + P A L++ D ++ R +T + HAE+ AL++ Sbjct: 16 DSDWMRHALQLAE-KARAQGEVPVGAVLVLNDRVIGEGWNRPITRHDPTAHAEIMALQQG 74 Query: 64 GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA ++ IRR+V D +G L Sbjct: 75 GAIMQNYRLLEATLYVTLEPCVM------CAGAMVHSRIRRLVYGAPDLKTGAAGSLLDV 128 Query: 119 LSQKGI 124 L G+ Sbjct: 129 LGHPGM 134 >gi|323342858|ref|ZP_08083090.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463970|gb|EFY09164.1| competence protein comEB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 159 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 6/56 (10%) Query: 46 VTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 T Y HAE+ A+ A + +G T YV+L PC+ C++ II+ GI+ +V Sbjct: 70 TTKYAYVVHAELNAILNATQSLQGCTIYVSLFPCNE------CSKAIIQSGIKEIV 119 >gi|119485470|ref|ZP_01619798.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya sp. PCC 8106] gi|119457226|gb|EAW38352.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Lyngbya sp. PCC 8106] Length = 161 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 11/59 (18%) Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ L +AG++ + T YVTLEPC P CA I++ I+ +V VDDP Sbjct: 57 HAEILVLRQAGQKLKDWHLNQCTLYVTLEPC------PMCAGAIVQARIQLLVYGVDDP 109 >gi|291614449|ref|YP_003524606.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans lithotrophicus ES-1] gi|291584561|gb|ADE12219.1| CMP/dCMP deaminase zinc-binding protein [Sideroxydans lithotrophicus ES-1] Length = 148 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 17/112 (15%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66 M AAL +R + V ++V+DG++IG G A + HAE+ AL +A + Sbjct: 1 MRAALDLARQ--AAQAGEVPVGAVVVRDGLIIGHGCNAPISRHDPSAHAEIAALRDAAQH 58 Query: 67 ARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +VTLEPC C + I RVV DP +G Sbjct: 59 IGNYRLVDCELFVTLEPCV------MCVGAMFHARIARVVFGAQDPKTGAAG 104 >gi|229015424|ref|ZP_04172427.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273] gi|229021629|ref|ZP_04178217.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272] gi|228739675|gb|EEL90083.1| hypothetical protein bcere0029_110 [Bacillus cereus AH1272] gi|228745866|gb|EEL95865.1| hypothetical protein bcere0030_220 [Bacillus cereus AH1273] Length = 164 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 17/119 (14%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ AT YVTLEPC P CA I+ ++RVV DP Sbjct: 53 HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 106 Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 +G + L+ + +V ++E E L + R++ K+ K+ S N Sbjct: 107 GGCAGTLMNLLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKEAKKLEKSNTN 164 >gi|313848259|emb|CBY17260.1| putative cytidine/deoxycytidylate deaminase family protein [Chlamydophila psittaci RD1] gi|328914938|gb|AEB55771.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila psittaci 6BC] Length = 157 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 20/123 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D FM+ AL+ +R V C+IVKD +I RG HAE+ + Sbjct: 6 DIFFMNQALKEAR--QAYDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGA 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + Y TLEPC CA I + IRR+V PD+R+ G G Sbjct: 64 AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQQARIRRIVWAA--PDLRL-GAGGS 114 Query: 118 WLS 120 W++ Sbjct: 115 WIN 117 >gi|254479893|ref|ZP_05093141.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [marine gamma proteobacterium HTCC2148] gi|214039455|gb|EEB80114.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [marine gamma proteobacterium HTCC2148] Length = 153 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 15/90 (16%) Query: 31 VACLIVKDGIVIGRG---VTAYGG-CPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVKDG ++G G V A+ HAEV A+ +A + G+T YVTLEPC+ Sbjct: 29 IGAVIVKDGQLLGEGWNSVIAFKDPTAHAEVVAMRDAAQMTGNYRLPGSTVYVTLEPCTM 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 CA +I + +V +P V Sbjct: 89 ------CAGAMIHARVAELVFAAKEPKAGV 112 >gi|150024385|ref|YP_001295211.1| cytosine/adenosine deaminase [Flavobacterium psychrophilum JIP02/86] gi|149770926|emb|CAL42391.1| Probable cytosine/adenosine deaminase [Flavobacterium psychrophilum JIP02/86] Length = 146 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 28/141 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEV 57 D FM AL+ +V V ++V + +I + VTA HAE+ Sbjct: 7 DEYFMRKALQ--EAYVAFDKEEIPVGAIVVINNRIIAKSHNLTELLNDVTA-----HAEM 59 Query: 58 QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 QA+ + G+ YVTLEPC CA + I ++V DP + Sbjct: 60 QAITASANFLGGKYLTNCILYVTLEPCQM------CAGALYWSQISKIVFGASDPQRGFT 113 Query: 113 GRGLQWLSQKGIIVDRMMESE 133 G Q L K I+V+ ++ESE Sbjct: 114 KMGTQ-LHPKTIVVNGILESE 133 >gi|332185432|ref|ZP_08387180.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Sphingomonas sp. S17] gi|332014410|gb|EGI56467.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Sphingomonas sp. S17] Length = 164 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 10/82 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62 D R+M AL+ +R ST+P + C+IV+ G V+ P HAE+ A+ Sbjct: 6 DERWMRLALQVARSKGSDPSTSP-LGCVIVRGGQVLAAERNQTHELPDATAHAEMMAIRR 64 Query: 63 AGE-----EARGATAYVTLEPC 79 A E E R AT Y TL+PC Sbjct: 65 ACESVGDLELRDATLYSTLQPC 86 >gi|323701686|ref|ZP_08113358.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323533459|gb|EGB23326.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 144 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V +G ++GRG + HAE+ A+ EA ++ AT YVT+EPC+ Sbjct: 19 IGAVVVAEGAIVGRGHDLRESLCDASAHAEILAMREAAKQLGDWRLNHATLYVTVEPCAM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 CA I++ +RR+V +P Sbjct: 79 ------CAGAIVQFRVRRLVYGAPNP 98 >gi|294496892|ref|YP_003560592.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551] gi|294346829|gb|ADE67158.1| tRNA-specific adenosine deaminase [Bacillus megaterium QM B1551] Length = 156 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 17/107 (15%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ AT YVTLEPC P CA I+ ++RVV DP Sbjct: 53 HAELLAIDEACKKLGTWRLEDATLYVTLEPC------PMCAGAIVLSRVKRVVFGAYDPK 106 Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 +G L L + + +V M+E E L + R++ +R Sbjct: 107 GGCAGTLLNLLEFEKFNHQAQVVGGMLEEECGSLLTTFF-RELRQRK 152 >gi|213964528|ref|ZP_03392728.1| riboflavin biosynthesis protein RibD C- domain protein [Corynebacterium amycolatum SK46] gi|213952721|gb|EEB64103.1| riboflavin biosynthesis protein RibD C- domain protein [Corynebacterium amycolatum SK46] Length = 256 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 21/160 (13%) Query: 184 HLLRAQSDAILVGIGTVLADD------PEL--TCRLN-GLQEHSPMRIILDPHFKLSLDS 234 + LRA +D + VG GT+ A+ PE T R G +H M L L + S Sbjct: 55 NTLRALADVVFVGTGTIAAEGYGPVEIPEYLETVRQKLGRSKHVAMST-LSRSLDLDIKS 113 Query: 235 KIIKTALLAPVIIVTENDDPV----LALAFRKKNINIIYCDCR-------DLKKLLTILV 283 A + P II T+ +D A + K + R +K L L Sbjct: 114 DFFANAEVNPPIIFTQTEDAFNDEEAKTAHKDKARKMESAGARVVKLPDPSVKAALAWLA 173 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G ++VEGG + + VD + L S + +G G Sbjct: 174 EHGYRDIVVEGGPTMYREAFENGCVDELFLTLSPMWVGNG 213 >gi|110801506|ref|YP_698456.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101] gi|110682007|gb|ABG85377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101] Length = 166 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM AL ++ S +P+ AC++ D ++G G + GC Sbjct: 10 SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE+ A L G+ + Y TL PC+ CA+ II+ GI Sbjct: 65 NKGEFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118 Query: 99 RVVVCVD 105 V+ D Sbjct: 119 EVIYLSD 125 >gi|224011555|ref|XP_002295552.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335] gi|209583583|gb|ACI64269.1| dCMP deaminase [Thalassiosira pseudonana CCMP1335] Length = 176 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 7/53 (13%) Query: 54 HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAEV A L + RGAT YV L PC+ C++ II+ GIR VV D Sbjct: 92 HAEVNAILNKCSASVRGATIYVALFPCNE------CSKVIIQSGIREVVYLND 138 >gi|189204912|ref|XP_001938791.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187985890|gb|EDU51378.1| tRNA-specific adenosine deaminase subunit TAD2 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 234 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 25/145 (17%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 ++ FM A+ + + L S V C+ VKDG +IGRG+ G HAE A+ Sbjct: 7 AYHEGFMREAIAMA--ELALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAI 64 Query: 61 EEAGEEARGATA-------YVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112 AG ++ + YVT+EPC CA + + GIR V C ++ R Sbjct: 65 --AGILSKHPISILNETDLYVTVEPCVM------CASMLRQYGIRAVYFGCWNE---RFG 113 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIF 137 G G VD+ G IF Sbjct: 114 GTGGVLNIHSDPSVDKPYPVTGGIF 138 >gi|291544028|emb|CBL17137.1| tRNA-adenosine deaminase [Ruminococcus sp. 18P13] Length = 151 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 47/111 (42%), Gaps = 19/111 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTA----YGGCPHAEVQAL 60 D +M A+ + L V L+V+D G V+GRG + HAEV A+ Sbjct: 3 DFAYMRQAMELAEQAAALGEI--PVGALVVQDATGEVLGRGYNRREVDHDPTAHAEVLAI 60 Query: 61 EEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 +A G T YVTLEPC P C II +RRVV D Sbjct: 61 RQAALAIGSWRLSGCTLYVTLEPC------PMCCGTIINARVRRVVFGAYD 105 >gi|167749860|ref|ZP_02421987.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702] gi|167657172|gb|EDS01302.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702] Length = 150 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 46/104 (44%), Gaps = 16/104 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M+ + ++ P A ++ KDG +IG G HAE+ A+E+ Sbjct: 4 DEEYMTLCIELAK-KAAEKGECPVGAIVVDKDGRIIGEGYNMREAEQMPTAHAEIIAIEQ 62 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 A + T YVTLEPC P CA II I+R+V Sbjct: 63 AAKAMNSWRLTECTLYVTLEPC------PMCAGAIINSRIKRLV 100 >gi|206978348|ref|ZP_03239222.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus H3081.97] gi|217957598|ref|YP_002336140.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH187] gi|222093791|ref|YP_002527839.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus Q1] gi|228983277|ref|ZP_04143492.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229136865|ref|ZP_04265494.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26] gi|229153801|ref|ZP_04281933.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342] gi|206743440|gb|EDZ54873.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus H3081.97] gi|217065488|gb|ACJ79738.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus AH187] gi|221237837|gb|ACM10547.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus Q1] gi|228629670|gb|EEK86365.1| Uncharacterized deaminase yaaJ [Bacillus cereus ATCC 4342] gi|228646600|gb|EEL02805.1| Uncharacterized deaminase yaaJ [Bacillus cereus BDRD-ST26] gi|228776457|gb|EEM24808.1| Uncharacterized deaminase yaaJ [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 166 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 44/170 (25%), Positives = 73/170 (42%), Gaps = 23/170 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV +G VI T HAE+ A++E Sbjct: 6 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLNGEVISVAHNLRETEQRSIAHAELLAIDE 63 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ ++RVV DP +G + Sbjct: 64 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMN 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L+ + +V ++E E L + R++ K+ + S++N Sbjct: 118 LLTDERFNHQCEVVAGVLEEECGTLLTNFF-RELRKKRKAIKNLEKSKEN 166 >gi|157371891|ref|YP_001479880.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568] gi|157323655|gb|ABV42752.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568] Length = 170 Score = 38.9 bits (89), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 53/127 (41%), Gaps = 17/127 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M ALR + V L+V D VIG G + + HAE+ AL + Sbjct: 6 DEYWMRQALRLAL--RAQEEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 63 Query: 63 AG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G + R AT YVTLEPC CA ++ IRR+V D +G + Sbjct: 64 GGAVLQNYRLLNATLYVTLEPCVM------CAGAMVHSRIRRLVYGAADVKTGAAGSLVD 117 Query: 118 WLSQKGI 124 L G+ Sbjct: 118 ILRHPGM 124 >gi|302379537|ref|ZP_07268022.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna ACS-171-V-Col3] gi|302312444|gb|EFK94440.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna ACS-171-V-Col3] Length = 155 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 64/158 (40%), Gaps = 21/158 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +FM A+ ++ L V C+IVK+G +I + T HAE++A+ + Sbjct: 5 DEKFMIKAIEQAKIAFDLDEV--PVGCVIVKNGEIIAQAYNSVETDNNATMHAELKAINQ 62 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC C ++ I +VV D G + Sbjct: 63 ATKVIGNFRLDDCTMYVTLEPCVM------CTGALVYSRIPKVVFGAFDKKRGACGSLIS 116 Query: 118 WLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151 +G I V +ME E + ++ R EK + Sbjct: 117 LNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNKN 154 >gi|288575144|ref|ZP_06393501.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570885|gb|EFC92442.1| CMP/dCMP deaminase zinc-binding [Dethiosulfovibrio peptidovorans DSM 11002] Length = 162 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 44/93 (47%), Gaps = 17/93 (18%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARGA------TAYVTLEPCS 80 V ++V VIGRG + HAE+ A+ +A + ARG+ YVTLEPC Sbjct: 25 VGAVVVYKNDVIGRGRNLRRIDHDPTAHAEIVAIRQAAK-ARGSWNLSGCEIYVTLEPC- 82 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ I +VV DP SG Sbjct: 83 -----PMCAGAIVQSRIAKVVYGCTDPKAGASG 110 >gi|332638741|ref|ZP_08417604.1| dCMP deaminase [Weissella cibaria KACC 11862] Length = 161 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 32/113 (28%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP------------ 53 M AA+ SR T T V ++VKDG +I G VT C Sbjct: 13 MMQAAMLASR----STCTRLHVGAVVVKDGRIIASGYNGSVTGTPHCTEVGDLLVDGHCI 68 Query: 54 ---HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 HAE AL + G A GA YVT PC H C +F+++ GI+++ Sbjct: 69 RAVHAEQNALMQLAKMGIAAEGAEIYVTDFPCVH------CTKFLLQAGIKKI 115 >gi|314121791|ref|YP_004063910.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7] gi|313151548|gb|ADR32604.1| deoxycytidylate deaminase [Enterobacteria phage vB_EcoM-VR7] Length = 193 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G GAT YVTL PC P CA+ I + GI+++V C Sbjct: 104 HAELNAILFAARMGSSIEGATMYVTLSPC------PDCAKAISQSGIKKLVYC 150 >gi|115388491|ref|XP_001211751.1| cytosine deaminase [Aspergillus terreus NIH2624] gi|114195835|gb|EAU37535.1| cytosine deaminase [Aspergillus terreus NIH2624] Length = 148 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 37/82 (45%), Gaps = 14/82 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ KDG ++GRG V HAE+ ALE +G GAT Y TL PC Sbjct: 24 PIGAALVSKDGKILGRGHNMRVQKGSATLHAEMAALENSGRLPASAYAGATMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVV 102 C I I RVV+ Sbjct: 84 M------CTGACILYKINRVVI 99 >gi|110801187|ref|YP_695768.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] gi|168215286|ref|ZP_02640911.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens CPE str. F4969] gi|110675834|gb|ABG84821.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] gi|170713327|gb|EDT25509.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens CPE str. F4969] Length = 166 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM AL ++ S +P+ AC++ D ++G G + GC Sbjct: 10 SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE+ A L G+ + Y TL PC+ CA+ II+ GI Sbjct: 65 NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118 Query: 99 RVVVCVD 105 V+ D Sbjct: 119 EVIYLSD 125 >gi|260654860|ref|ZP_05860348.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1] gi|260630362|gb|EEX48556.1| tRNA-specific adenosine deaminase [Jonquetella anthropi E3_33 E1] Length = 166 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 20/137 (14%) Query: 29 PSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA-----GEEARGATAYVTLEPC 79 P A ++ + G +IGRG HAE+ AL EA G G + +VTLEPC Sbjct: 19 PVGAVVVDEKGNIIGRGYNLRAALHDPTAHAEIVALREAAQALGGWNLSGCSLFVTLEPC 78 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134 P CA +++ I RVV D G L+ + + + +M E Sbjct: 79 ------PMCAGALVQARIARVVFGCRDERAGACGSLYSILRDGRLNHRCDVAEGLMADEC 132 Query: 135 KIFLHAYLTRQVEKRSH 151 + L ++ EK+ Sbjct: 133 RSLLQSFFLAAREKKRQ 149 >gi|299115986|emb|CBN75987.1| conserved unknown protein [Ectocarpus siliculosus] Length = 284 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 53/127 (41%), Gaps = 38/127 (29%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP-------- 53 +D FMS A + + S +PS AC++ +D ++G G + GC Sbjct: 128 WDDYFMSVA-----FLSAMRSKDPSTQVGACIVNEDKRIVGIGYNGFPMGCSDDDLPWAR 182 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE+ A L + + +G YV L PC+ CA+ II+ GIR Sbjct: 183 QADDELDTKYPYVCHAEMNAILNKNSADVKGCLIYVALFPCNE------CAKLIIQSGIR 236 Query: 99 RVVVCVD 105 VV D Sbjct: 237 EVVYLSD 243 >gi|296195104|ref|XP_002745234.1| PREDICTED: deoxycytidylate deaminase-like [Callithrix jacchus] Length = 178 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GIR V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSTDVKGCTMYVALFPCNE------CAKLIIQAGIREVIFMSD 130 Query: 106 ---DPDVRVSGR 114 D D + R Sbjct: 131 KYHDSDEATAAR 142 >gi|229828779|ref|ZP_04454848.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM 14600] gi|229793373|gb|EEP29487.1| hypothetical protein GCWU000342_00853 [Shuttleworthia satelles DSM 14600] Length = 154 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 17/121 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66 M A+R +R + + C+I ++G +I RG + HAE+ A+++A + Sbjct: 1 MKEAIRQARKAEAIEEV--PIGCVIEREGKIIARGYNRRNIDHSVLKHAEITAIQKACRK 58 Query: 67 A-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 T YVTLEPC CA I++ I RVV+ +P +G + L Sbjct: 59 LGDWRLEDCTLYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKAGSAGSVINLLQM 112 Query: 122 K 122 + Sbjct: 113 R 113 >gi|228989231|ref|ZP_04149225.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM 12442] gi|228995414|ref|ZP_04155085.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17] gi|229003028|ref|ZP_04160886.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4] gi|228758228|gb|EEM07415.1| hypothetical protein bmyco0002_210 [Bacillus mycoides Rock1-4] gi|228764340|gb|EEM13216.1| hypothetical protein bmyco0003_200 [Bacillus mycoides Rock3-17] gi|228770506|gb|EEM19076.1| hypothetical protein bpmyx0001_110 [Bacillus pseudomycoides DSM 12442] Length = 165 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 16/99 (16%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A++EA ++ AT YVTLEPC P CA I+ ++RVV DP Sbjct: 53 HAELLAIDEACKKLGTWRLENATLYVTLEPC------PMCAGGIVLSRVKRVVYGASDPK 106 Query: 109 VRVSGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G + L+ + +V +ME E + L + Sbjct: 107 GGCAGTLMNLLTDERFNHQCEVVSGVMEEECGMLLTNFF 145 >gi|150395640|ref|YP_001326107.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419] gi|150027155|gb|ABR59272.1| CMP/dCMP deaminase zinc-binding [Sinorhizobium medicae WSM419] Length = 149 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 25/127 (19%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG--------CPHAEVQA 59 A FM AAL+ +R + +IV +G V V A G HAE++A Sbjct: 5 APFMQAALQEARKAAARGEV--PIGAVIVHEGEV----VAAAGNRTRELNDITAHAEIEA 58 Query: 60 LEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + A GE GA YVTLEPC+ CA I IRR+ +DP Sbjct: 59 IRMAATAIGGERLSGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDN 112 Query: 115 GLQWLSQ 121 G+++ S Sbjct: 113 GVRFYSS 119 >gi|18310048|ref|NP_561982.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens str. 13] gi|18144727|dbj|BAB80772.1| deoxycytidylate deaminase [Clostridium perfringens str. 13] Length = 166 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM AL ++ S +P+ AC++ D ++G G + GC Sbjct: 10 SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE+ A L G+ + Y TL PC+ CA+ II+ GI Sbjct: 65 NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118 Query: 99 RVVVCVD 105 V+ D Sbjct: 119 EVIYLSD 125 >gi|291460249|ref|ZP_06599639.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417196|gb|EFE90915.1| putative deoxycytidylate deaminase [Oribacterium sp. oral taxon 078 str. F0262] Length = 166 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 44/145 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S++ FM A +R S +PS AC++ +D ++ G + GC Sbjct: 12 SWEEYFMGVAEMSAR-----RSKDPSTQVGACIVSRDNKILSMGYNGFPRGCSDDLFPWT 66 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A L G GA YVTL PC+ CA+ +I+ Sbjct: 67 KIHVSDDPYNAKYFYSTHAELNAILNYRGGSLEGAKLYVTLFPCNE------CAKALIQA 120 Query: 96 GIRRVVV----CVDDPDVRVSGRGL 116 GI+ +V D P++R S R L Sbjct: 121 GIKTLVYREDKYADTPELRASRRML 145 >gi|332973009|gb|EGK10948.1| cytidine/deoxycytidylate deaminase [Psychrobacter sp. 1501(2011)] Length = 207 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 24/160 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D + M AAL ++ G + V ++V++G +IG G + HAE+ AL Sbjct: 53 DVKCMQAALELAQQ--GASKEEVPVGAVLVQEGNIIGEGFNQPILTCDPTAHAEIVALRS 110 Query: 63 AG---EEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A E R T YVTLEPC+ C +I + R+V +P + G L Sbjct: 111 ACSALENYRLPANTTLYVTLEPCTM------CLGALIHARLSRLVFATQEPRAGMVGSQL 164 Query: 117 Q-----WLSQKGIIVDRMMESEGKIFLHAYL-TRQVEKRS 150 + + K + +++++ + L ++ R+ +K++ Sbjct: 165 NLVEMDFYNHKIAVNYGLLQADSQQILKSFFKARRTKKKN 204 >gi|296157007|ref|ZP_06839844.1| bifunctional deaminase-reductase domain protein [Burkholderia sp. Ch1-1] gi|295892893|gb|EFG72674.1| bifunctional deaminase-reductase domain protein [Burkholderia sp. Ch1-1] Length = 225 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274 I +DP +++ S TAL + VI ++TE DD + L ++I + Y D Sbjct: 84 ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTGID 136 Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 L K++ L GV L+VEGG+ V+ +F+N+ LVD + + +V G PS E Sbjct: 137 LDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSAHPSSFE 193 >gi|238021048|ref|ZP_04601474.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147] gi|237868028|gb|EEP69034.1| hypothetical protein GCWU000324_00945 [Kingella oralis ATCC 51147] Length = 238 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 44/99 (44%), Gaps = 16/99 (16%) Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+QAL AG+ YV+LEPC+ CA +I+ + RVV +P Sbjct: 142 HAEIQALAAAGQVLGNYRLNECDVYVSLEPCAM------CASAMIQARVARVVFAAHEPK 195 Query: 109 VRVSGRGL-----QWLSQKGIIVDRMMESEGKIFLHAYL 142 +G L L+Q ++ ++ E K L A+ Sbjct: 196 TGAAGSVLNLFSNNQLNQHTAMLGGLLADEAKQQLQAFF 234 >gi|299820898|ref|ZP_07052787.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601] gi|299817919|gb|EFI85154.1| tRNA-specific adenosine deaminase [Listeria grayi DSM 20601] Length = 173 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 17/113 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 FM A++ +R L + ++V D +IGRG T HAE+ A++ A + Sbjct: 19 FMEEAIKEARKAQALGEV--PIGAVVVLDNEIIGRGHNLRETTQNAITHAEILAIQAACQ 76 Query: 66 EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A YVTLEPC P C+ I+ +++V DP +G Sbjct: 77 NRESWRLSEAEIYVTLEPC------PMCSGAILLSRLKKVYYGAPDPKAGTAG 123 >gi|189502659|ref|YP_001958376.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus 5a2] gi|189498100|gb|ACE06647.1| hypothetical protein Aasi_1340 [Candidatus Amoebophilus asiaticus 5a2] Length = 160 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 14/92 (15%) Query: 50 GGCP---HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 GGC HAE A+ A GAT Y+TL PC PCA+ I GI+RVV Sbjct: 68 GGCSLAIHAEQNAILYALSNQAAVTGATLYITLSPCL------PCARIIFTVGIKRVVYV 121 Query: 104 VDDPDVRVSGR--GLQWLSQKGIIVDRMMESE 133 + + GL++L G+ V+ +S Sbjct: 122 QSYAAYKGLSKEEGLEFLDSFGVKVEAYQQSN 153 >gi|226366259|ref|YP_002784042.1| hypothetical protein ROP_68500 [Rhodococcus opacus B4] gi|226244749|dbj|BAH55097.1| hypothetical protein [Rhodococcus opacus B4] Length = 262 Score = 38.9 bits (89), Expect = 1.2, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 83/201 (41%), Gaps = 31/201 (15%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L+AY R I + S D + G++G P + + LR +D +L Sbjct: 32 LYAYPAET--PRPWIRVNFVSSIDGAVSVDGVSGALGTPADALVFET----LRELADVVL 85 Query: 195 VGIGTVLADD-------PELTCR--LNGLQEHSPMRII-----LDPHFKLSLDSKIIKTA 240 VG GTV A++ E R +G+ E P+ ++ LDPH +L D+++ Sbjct: 86 VGAGTVRAENYGGARIGAEGRGRRVASGMPEVPPIAVVSARAHLDPHARLFTDTEV---- 141 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAV 298 AP+++ + DP I+ + + L+ L G+ +L EGG ++ Sbjct: 142 --APIVVTCADADPARIRDLAAAGARIVTAGEVQITSEGLIAALDDLGLRRVLCEGGPSL 199 Query: 299 AHSFINSRLVDSIILYRSQIV 319 I VD + L + ++ Sbjct: 200 FGQLIADDSVDEVCLTTAPVL 220 >gi|27467245|ref|NP_763882.1| Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC 12228] gi|27314788|gb|AAO03924.1|AE016745_23 Cu binding protein (Mn oxidation [Staphylococcus epidermidis ATCC 12228] gi|329734672|gb|EGG70979.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus epidermidis VCU028] Length = 168 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVK+G VI R T HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA II I +VV DP SG + L Q + + ++E E Sbjct: 86 ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRATVEKGILEEECAE 139 Query: 137 FLHAYLTRQVEKRS 150 L ++ EK+ Sbjct: 140 LLRSFFKEIREKKK 153 >gi|329729486|gb|EGG65889.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus epidermidis VCU144] Length = 168 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVK+G VI R T HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKEGQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA II I +VV DP SG + L Q + + ++E E Sbjct: 86 ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRATVEKGILEEECAE 139 Query: 137 FLHAYLTRQVEKRS 150 L ++ EK+ Sbjct: 140 LLRSFFKEIREKKK 153 >gi|329928171|ref|ZP_08282117.1| guanine deaminase [Paenibacillus sp. HGF5] gi|328938048|gb|EGG34447.1| guanine deaminase [Paenibacillus sp. HGF5] Length = 188 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%) Query: 34 LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79 ++VKDG VIGRG VTA HAEVQA+ EA + +G T Y + EPC Sbjct: 61 IVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREACLHLEDFQLKGCTIYTSCEPC 115 >gi|89092520|ref|ZP_01165473.1| putative cytosine deaminase [Oceanospirillum sp. MED92] gi|89083032|gb|EAR62251.1| putative cytosine deaminase [Oceanospirillum sp. MED92] Length = 188 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 19/102 (18%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 AAL + VG + CL V V +G + G HAE+ L++ EAR Sbjct: 39 AALEEGNYGVGAVLLDRQGECLAVGSNQVFSQGFNSAG---HAEMNLLDDF--EARYDDY 93 Query: 69 ----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 G T V+LEPC P C I+ GI RV+ V+D Sbjct: 94 PDRAGLTLLVSLEPC------PMCTARILAAGIGRVIYLVED 129 >gi|270264772|ref|ZP_06193037.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13] gi|270041455|gb|EFA14554.1| hypothetical protein SOD_i01890 [Serratia odorifera 4Rx13] Length = 168 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V L+V D VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 28 VGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQGGAVLQNYRLLNATLYVTLEPCVM 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V D +G + L G+ Sbjct: 88 ------CAGAMVHSRIRRLVYGAADVKTGAAGSLVDILRHPGM 124 >gi|228469636|ref|ZP_04054616.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas uenonis 60-3] gi|228308829|gb|EEK17530.1| cytidine/deoxycytidylate deaminase family protein [Porphyromonas uenonis 60-3] Length = 162 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 40/144 (27%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V LIV + ++I G Y G P Sbjct: 19 LDRRY----LRMARIWAENSYCQRRQVGALIVHNQMIISDG---YNGTPSGFENVCEDDE 71 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE A+ + +G GAT Y+T PC CA+ II+ IRRVV Sbjct: 72 GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVVY 125 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIV 126 R++ GL+ L + G+ V Sbjct: 126 ---GEQYRLTD-GLELLKRAGVEV 145 >gi|261407450|ref|YP_003243691.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] gi|261283913|gb|ACX65884.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] Length = 159 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 9/55 (16%) Query: 34 LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79 ++VKDG VIGRG VTA HAEVQA+ EA + +G T Y + EPC Sbjct: 32 IVVKDGQVIGRGRNLVTALNDPTAHAEVQAIREACLHLEDFQLKGCTIYTSCEPC 86 >gi|258510212|ref|YP_003183646.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476938|gb|ACV57257.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 151 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 31/127 (24%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTA--YG-------GCP----------HAEVQALEEA-- 63 T T V C++V+D +I G +G GC HAE AL + Sbjct: 26 TCTRLQVGCVVVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCAR 85 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G A GA YVT PC C + +I+ GIRRV + + R ++ LS+ Sbjct: 86 FGIAAEGADLYVTHTPC------LTCTKSLIQAGIRRVFY---EFEYRPDPYAMELLSKA 136 Query: 123 GIIVDRM 129 G++V+++ Sbjct: 137 GVVVEQV 143 >gi|168207992|ref|ZP_02633997.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] gi|168210758|ref|ZP_02636383.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] gi|168217464|ref|ZP_02643089.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] gi|169342382|ref|ZP_02863448.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] gi|182626202|ref|ZP_02953960.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens D str. JGS1721] gi|169299502|gb|EDS81566.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] gi|170660714|gb|EDT13397.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] gi|170711173|gb|EDT23355.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] gi|177908466|gb|EDT70999.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens D str. JGS1721] gi|182380416|gb|EDT77895.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] Length = 166 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM AL ++ S +P+ AC++ D ++G G + GC Sbjct: 10 SWDEYFMGVALISAK-----RSKDPNTQVGACIVDNDNKIVGIGYNGFPKGCSDDDLPWG 64 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE+ A L G+ + Y TL PC+ CA+ II+ GI Sbjct: 65 NKGDFLETKYPYACHAELNAILNSTGKNVKNCRVYATLFPCNE------CAKAIIQAGIT 118 Query: 99 RVVVCVD 105 V+ D Sbjct: 119 EVIYLSD 125 >gi|310639569|ref|YP_003944327.1| cmp/dcmp deaminase zinc-binding protein [Paenibacillus polymyxa SC2] gi|309244519|gb|ADO54086.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus polymyxa SC2] Length = 165 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 17/101 (16%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80 + +IVKD +IGRG T HAE+ A+ +A E GA YVTLEPC Sbjct: 28 IGAVIVKDNEIIGRGYNLRETDTDPTAHAEMVAIRQASEHL-GAWRLLDCRLYVTLEPC- 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ + ++ DP +G + L + Sbjct: 86 -----PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNLLQE 121 >gi|295099508|emb|CBK88597.1| Deoxycytidylate deaminase [Eubacterium cylindroides T2-87] Length = 164 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 36/124 (29%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP----- 53 V S+D FMS A ++ S +PS AC++ V+G G + GC Sbjct: 6 VLSWDEYFMSMAHLSAK-----RSKDPSTQVGACIVNSQKRVVGLGYNGFPKGCDDNEFP 60 Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 HAE+ A+ + ++ G T YV+L PC+ CA+ II+ GI Sbjct: 61 WARDGEFLDTKYPYVVHAELNAILNSIQDLNGCTIYVSLFPCNE------CAKAIIQSGI 114 Query: 98 RRVV 101 + VV Sbjct: 115 KCVV 118 >gi|257437839|ref|ZP_05613594.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii A2-165] gi|257199499|gb|EEU97783.1| putative deoxycytidylate deaminase [Faecalibacterium prausnitzii A2-165] Length = 168 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 29/72 (40%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L A +GA YVTL PC+ CA+ II+ GI VV D Sbjct: 79 TKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CAKAIIQSGISEVVYYGD 132 Query: 106 ---DPDVRVSGR 114 D D V+ R Sbjct: 133 KYHDSDSSVAAR 144 >gi|254173880|ref|ZP_04880551.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp. AM4] gi|214032129|gb|EEB72960.1| carbon-monoxide dehydrogenase, catalytic subunit [Thermococcus sp. AM4] Length = 632 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 3/108 (2%) Query: 34 LIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91 LI +D +V+G G + +A++ AG + + + PC H G C++ Sbjct: 469 LIKRDVLVVGTGCWSIAAAMEGLMSPKAVDLAGPGLKKICEALNIPPCLHMGSCVDCSRI 528 Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 +I G + VD D+ +G +W+S+K + + + G +F H Sbjct: 529 LIALGALADALGVDISDLPAAGSAPEWMSEKAVSIGTYFVASG-VFTH 575 >gi|162447679|ref|YP_001620811.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A] gi|161985786|gb|ABX81435.1| deoxycytidylate deaminase [Acholeplasma laidlawii PG-8A] Length = 158 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 51/129 (39%), Gaps = 42/129 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A + S L S +P+ AC+I D ++ G Y G P Sbjct: 8 SWDQYFMGVA-KLS----ALRSKDPNTQVGACIINPDRRIVAIG---YNGLPMGLSDDED 59 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE A+ A + AT YVTL PC+ C + +++ G Sbjct: 60 FWQKNEDYSKSKYAYVVHAEANAILNATTSLKDATLYVTLFPCNE------CMKLLVQAG 113 Query: 97 IRRVVVCVD 105 ++ +V D Sbjct: 114 VKEIVYMSD 122 >gi|149248448|ref|XP_001528611.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146448565|gb|EDK42953.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 271 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 55/121 (45%), Gaps = 18/121 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 P S +FM+ AL F + L + P VAC++ + +I G G HAE Sbjct: 3 PDLSQHFKFMAVAL-FVGYKALLKNETP-VACVVTRGCQIISIGYNHTNITLNGTKHAEF 60 Query: 58 QALEEAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVSGR 114 AL E + + T YVT+EPC CA ++ + G++ V+ C +D R G Sbjct: 61 IALGRLKEPVDYKNLTLYVTVEPCIM------CASYLRQLGLKNVIYGCGND---RFGGA 111 Query: 115 G 115 G Sbjct: 112 G 112 >gi|291526381|emb|CBK91968.1| Deoxycytidylate deaminase [Eubacterium rectale DSM 17629] gi|291526826|emb|CBK92412.1| Deoxycytidylate deaminase [Eubacterium rectale M104/1] Length = 161 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 35/125 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM A+ G+ S +P+ AC++ + ++ G + GC Sbjct: 12 SWDEYFMGIAML-----SGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWA 66 Query: 54 ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 H+E+ A L G GAT YVTL PC+ CA+ II+ GIR V Sbjct: 67 REGEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREV 120 Query: 101 VVCVD 105 V D Sbjct: 121 VYDCD 125 >gi|50555826|ref|XP_505321.1| YALI0F12199p [Yarrowia lipolytica] gi|49651191|emb|CAG78128.1| YALI0F12199p [Yarrowia lipolytica] Length = 605 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 11/91 (12%) Query: 29 PSVACL---IVKDGIVIGRGVT-AYGGCPHAEVQALEE------AGEEARGATAYVTLEP 78 PS C+ +VKDG V+ G + G HAE ALE+ + Y T+EP Sbjct: 475 PSAFCVGAVLVKDGQVLETGFSRELPGNTHAEQCALEKYFAKNNVSDVPENTVIYTTMEP 534 Query: 79 CSH-YGRSPPCAQFIIECGIRRVVVCVDDPD 108 CS + PC I+ I+ V V V +PD Sbjct: 535 CSERLSGNLPCVDRILNSSIKTVFVGVLEPD 565 >gi|291545680|emb|CBL18788.1| Pyrimidine reductase, riboflavin biosynthesis [Ruminococcus sp. SR1/5] Length = 116 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 4/70 (5%) Query: 265 INIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + IYC D DLKKL+T L RG+ S+L+EGG + S + + +V + + + + Sbjct: 3 VETIYCPDEKDQIDLKKLMTDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKLF 62 Query: 321 GEGGIPSPLE 330 G +P+E Sbjct: 63 GGVAGKTPVE 72 >gi|227510688|ref|ZP_03940737.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189809|gb|EEI69876.1| possible guanine deaminase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 157 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 D +FM AL L P + +I +DG +IGRG G HAE+ A+EE Sbjct: 6 DEKFMKMAL-IEAQKAYLIGEVP-IGAVITQDGQIIGRGHNLREHLNDGVAHAEIMAIEE 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A R YVT+EPC C+ I+ I RVV D Sbjct: 64 ACRYLRSWRLVDCELYVTIEPC------LMCSGAIVNSRIDRVVFGARDK 107 >gi|115725150|ref|XP_781375.2| PREDICTED: similar to MGC81193 protein [Strongylocentrotus purpuratus] gi|115958553|ref|XP_001190940.1| PREDICTED: similar to MGC81193 protein [Strongylocentrotus purpuratus] Length = 205 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GIR++V D Sbjct: 129 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKVIIQSGIRKIVFLSD 182 >gi|294340450|emb|CAZ88831.1| tRNA-specific adenosine deaminase [Thiomonas sp. 3As] Length = 187 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 66/155 (42%), Gaps = 33/155 (21%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D FM AL ++ W +G V +IVKDG VI G + + HAE+ A+ Sbjct: 12 DRAFMRLALDQAQNAWLLGEVP----VGAVIVKDGKVIATGYNRPIGDHDPTAHAEIVAI 67 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A T YVTLEPC+ CA ++ RVV DP +G Sbjct: 68 RQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAAGS- 120 Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 +VD + +E ++ H +T ++E+ + Sbjct: 121 ---------VVD--LFAEPRLNHHCDITPEIEQEA 144 >gi|313886183|ref|ZP_07819913.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I] gi|332299700|ref|YP_004441621.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas asaccharolytica DSM 20707] gi|312924362|gb|EFR35141.1| dCMP deaminase [Porphyromonas asaccharolytica PR426713P-I] gi|332176763|gb|AEE12453.1| CMP/dCMP deaminase zinc-binding protein [Porphyromonas asaccharolytica DSM 20707] Length = 161 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 36/119 (30%) Query: 6 FDARFMSAALRFSR-WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----------- 53 D R+ LR +R W V LIV + ++I G Y G P Sbjct: 18 LDRRY----LRMARIWAENSYCRRRQVGALIVHNQMIISDG---YNGTPSGFENVCEDDE 70 Query: 54 --------HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ + +G GAT Y+T PC CA+ II+ IRRVV Sbjct: 71 GITKPYVLHAEANAITKVAASGNNCTGATIYITASPCLE------CAKLIIQSRIRRVV 123 >gi|302342017|ref|YP_003806546.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM 2075] gi|301638630|gb|ADK83952.1| CMP/dCMP deaminase zinc-binding protein [Desulfarculus baarsii DSM 2075] Length = 171 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 11/76 (14%) Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ L +A G+T YV+LEPC P CA I+ +RRVV DP Sbjct: 63 HAEMLVLRQAAAAMGNYRLVGSTLYVSLEPC------PMCAGAIVWARVRRVVYGAADPK 116 Query: 109 VRVSGRGLQWLSQKGI 124 G L Q G+ Sbjct: 117 AGALGSALDLSRQPGL 132 >gi|121714253|ref|XP_001274737.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Aspergillus clavatus NRRL 1] gi|119402891|gb|EAW13311.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Aspergillus clavatus NRRL 1] Length = 191 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 52/123 (42%), Gaps = 21/123 (17%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58 V A FM AL + + T V C++V+DG +IG G+ + G HAE Sbjct: 14 VDPTHAYFMKQALLMGEKALEIGET--PVGCVLVRDGQLIGSGMNDTNKSMNGTRHAEFI 71 Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV-CVDDPDVRVS 112 A+EE R YVT+EPC CA + + IR V C ++ R Sbjct: 72 AIEEMLRSHPRSLLRSTDLYVTVEPCVM------CASALRQYQIRSVYFGCANE---RFG 122 Query: 113 GRG 115 G G Sbjct: 123 GTG 125 >gi|163938030|ref|YP_001642914.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4] gi|163860227|gb|ABY41286.1| CMP/dCMP deaminase zinc-binding [Bacillus weihenstephanensis KBAB4] Length = 164 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM A+ ++ + + +IV DG VI T HAE+ A++E Sbjct: 4 DIYFMQLAIEEAKKAEAIQEV--PIGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ AT YVTLEPC P CA I+ I+RVV DP +G + Sbjct: 62 ACKKLGTWRLEDATLYVTLEPC------PMCAGGIVLSRIKRVVYGASDPKGGCAGTLMN 115 Query: 118 WLSQK 122 L+ + Sbjct: 116 LLTDE 120 >gi|302390668|ref|YP_003826489.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646] gi|302201296|gb|ADL08866.1| tRNA-adenosine deaminase [Thermosediminibacter oceani DSM 16646] Length = 152 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 47/113 (41%), Gaps = 17/113 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65 FM AL+ +R V +I +G +I R + HAEV A++ A E Sbjct: 9 FMREALKEAR--KAFEQDEVPVGAVIAYEGSIIARAHNLRERSQDATAHAEVLAIKAACE 66 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 G + YVTLEPC P CA II + RVV DP +G Sbjct: 67 AMGTWRLTGCSLYVTLEPC------PMCAGAIILARLDRVVFGAPDPKAGAAG 113 >gi|251788710|ref|YP_003003431.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591] gi|247537331|gb|ACT05952.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591] Length = 168 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+ G VIG G + + HAE+ AL++ G+ + T Y+TLEPC Sbjct: 29 VGAVLVQGGNVIGEGWNRPIGRHDPTAHAEIMALQQGGQTLQNYRLLDTTLYITLEPCVM 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I R+V D +G + L GI Sbjct: 89 ------CAGAMIHSRISRLVYGAADAKTGAAGSLVDILRHPGI 125 >gi|254490420|ref|ZP_05103607.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Methylophaga thiooxidans DMS010] gi|224464386|gb|EEF80648.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Methylophaga thiooxydans DMS010] Length = 149 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V +IV + +IG G ++A HAE+ AL +A + GA Y+TLEPC+ Sbjct: 26 VGAVIVLNNEIIGEGWNQPISANDATAHAEIIALRQACQLMNNYRLPGADMYITLEPCAM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I +VV +P +G Sbjct: 86 ------CAGALVHARINKVVYATAEPKTGAAG 111 >gi|81298931|ref|YP_399139.1| cytosine/adenosine deaminase-like [Synechococcus elongatus PCC 7942] gi|81167812|gb|ABB56152.1| Cytosine/adenosine deaminases-like [Synechococcus elongatus PCC 7942] Length = 161 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 15/104 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D RFM A+ SR + T C+I ++G +I G +T HAE+ A+ + Sbjct: 6 DERFMRRAIALSRQAGLIDCTGGPFGCVITRNGEIIAEGFNQVLTERDPTWHAEIAAIRQ 65 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 A + + G T Y + EPC P CA + + R+V Sbjct: 66 ACQHLQTVDLSGCTLYTSAEPC------PMCAAAVYWAKLDRLV 103 >gi|296532454|ref|ZP_06895178.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957] gi|296267229|gb|EFH13130.1| deoxycytidylate deaminase [Roseomonas cervicalis ATCC 49957] Length = 201 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 HAE AL AG ARG AYV +P + CA +I+ G++RVV Sbjct: 82 HAEQNALLHAGHNARGCDAYVVGKPVCNT-----CATLLIQAGVKRVVAAA 127 >gi|238922541|ref|YP_002936054.1| dCMP deaminase [Eubacterium rectale ATCC 33656] gi|238874213|gb|ACR73920.1| dCMP deaminase [Eubacterium rectale ATCC 33656] Length = 161 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 53/125 (42%), Gaps = 35/125 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM A+ G+ S +P+ AC++ + ++ G + GC Sbjct: 12 SWDEYFMGIAML-----SGMRSKDPNTQVGACIVDPEHKILSMGYNGFPLGCSDDEFTWA 66 Query: 54 ------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 H+E+ A L G GAT YVTL PC+ CA+ II+ GIR V Sbjct: 67 REGEDNKYFYSTHSELNAILNYRGGSLEGATIYVTLFPCNE------CAKAIIQSGIREV 120 Query: 101 VVCVD 105 V D Sbjct: 121 VYDCD 125 >gi|312891108|ref|ZP_07750631.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM 18603] gi|311296416|gb|EFQ73562.1| CMP/dCMP deaminase zinc-binding [Mucilaginibacter paludis DSM 18603] Length = 159 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 43/93 (46%), Gaps = 21/93 (22%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGG 51 +P S D FM AL+ +R + L + L+V G +IGRG V+A Sbjct: 10 IPAISPDDFFMKEALKEAR--LALAEDEIPIGALVVCKGQIIGRGHNLTERLNDVSA--- 64 Query: 52 CPHAEVQALEEAGEEARGA-----TAYVTLEPC 79 HAE+QAL A G T YVT+EPC Sbjct: 65 --HAEMQALTAATNYTGGKYLPDCTLYVTMEPC 95 >gi|307297235|ref|ZP_07577041.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium mesG1.Ag.4.2] gi|306916495|gb|EFN46877.1| CMP/dCMP deaminase zinc-binding [Thermotogales bacterium mesG1.Ag.4.2] Length = 168 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE A+ +A G G+T YVT PCS CA+ II GI+RVV PD Sbjct: 98 HAEQNAIAQAAKFGIATNGSTIYVTHRPCS------VCARLIINAGIKRVVFSEGYPD 149 >gi|310790867|gb|EFQ26400.1| cytidine and deoxycytidylate deaminase zinc-binding region [Glomerella graminicola M1.001] Length = 149 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 18/127 (14%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ DG ++GRG V H E AL +G + +G+T Y TL PC Sbjct: 24 PIGAALVSADGKLLGRGHNRRVQMGSAIHHGETDALFNSGRLPGKAYKGSTMYTTLSPCD 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA 140 C + GI RVV+ + R G +L Q+G+ V + +E K + Sbjct: 84 M------CTGACLLYGISRVVI----GENRTFLGGEAYLKQRGVEVVVLDSAECKALMDK 133 Query: 141 YLTRQVE 147 ++ + E Sbjct: 134 FIAEKPE 140 >gi|319793607|ref|YP_004155247.1| cmp/dcmp deaminase zinc-binding protein [Variovorax paradoxus EPS] gi|315596070|gb|ADU37136.1| CMP/dCMP deaminase zinc-binding protein [Variovorax paradoxus EPS] Length = 368 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/93 (34%), Positives = 42/93 (45%), Gaps = 17/93 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA------RGATAYVTLEPCS 80 V ++VKDG VI G V + HAE+ AL AG A G +VTLEPC+ Sbjct: 27 VGAVLVKDGQVIATGRNTPVAQHDPSAHAEINALR-AGASALGNYRLDGCELFVTLEPCA 85 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ + RVV DP +G Sbjct: 86 M------CAGAMLHSRLARVVFGATDPKTGAAG 112 >gi|293194557|ref|ZP_06610019.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309] gi|292819677|gb|EFF78695.1| tRNA-specific adenosine deaminase [Actinomyces odontolyticus F0309] Length = 332 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/95 (36%), Positives = 45/95 (47%), Gaps = 17/95 (17%) Query: 29 PSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARGA------TAYVTLEP 78 P A ++ ++G +IGRG + HAE+ AL EAG ARG T VTLEP Sbjct: 18 PVGAVIVDENGRIIGRGWNCREANHDPAGHAEIVALREAGR-ARGTWRLTGCTLIVTLEP 76 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C+ CA I+ I RVV DP +G Sbjct: 77 CTM------CAGAILASRIDRVVFGAWDPKAGAAG 105 >gi|325679150|ref|ZP_08158742.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] gi|324109155|gb|EGC03379.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] Length = 159 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A+ + + +G+ YV+L PC+ CA+ II+ GI+ V+ D Sbjct: 71 TKYPFVCHAELNAILNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123 >gi|269468375|gb|EEZ80040.1| cytosine/adenosine deaminase [uncultured SUP05 cluster bacterium] Length = 156 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 17/142 (11%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---GRGVTAYGGCPHAEVQAL 60 SS D ++M AL +R+ P A L+ D ++ + ++ HAE+Q L Sbjct: 5 SSLDEKWMKIALEQARFAQAKNEV-PVGAILVKNDQLIASAHNQPISNNDPTAHAEIQLL 63 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AG+ T YVTLEPC+ C +I + RVV D V G Sbjct: 64 RVAGKRLNNYRLPNTTLYVTLEPCTM------CLGAMIHARVSRVVFGAYDKKTGVCGSC 117 Query: 116 LQWLSQKGIIVDRMMESEGKIF 137 ++ K + ++++G I Sbjct: 118 QDLVTSK--CFNHQLQAQGGIL 137 >gi|253581046|ref|ZP_04858307.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847709|gb|EES75678.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 163 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 41/143 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM A+ G+ S +P+ AC++ +D ++ G + GC Sbjct: 12 SWDEYFMGVAMM-----SGMRSKDPNSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWA 66 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 H+E+ A L G GA YV+L PC+ CA+ II+ GI+ Sbjct: 67 REGDSLHTKYFYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIK 120 Query: 99 RVVV----CVDDPDVRVSGRGLQ 117 +V D P V S R L Sbjct: 121 TIVYDCDKYADTPAVIASKRMLD 143 >gi|183601156|ref|ZP_02962649.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827] gi|188019501|gb|EDU57541.1| hypothetical protein PROSTU_04786 [Providencia stuartii ATCC 25827] Length = 154 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 13/122 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 D +F+ A+ ++ +V + +IV+DG V+ GV HAE+ AL + Sbjct: 3 DKQFLQQAISLAKENV--KAGGRPFGAVIVRDGAVVATGVNQMLELNDPTAHAELMALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIE---CGIRRVVVCVDDPDVRVSGRGLQWL 119 AGE + LE C Y PC + GI R+V + D G + + Sbjct: 61 AGETLK----RTRLEDCVVYASGQPCPMCLAAMRMAGISRIVYAYSNQDAEPFGLSTEAI 116 Query: 120 SQ 121 +Q Sbjct: 117 AQ 118 >gi|227355681|ref|ZP_03840074.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906] gi|227164000|gb|EEI48897.1| deaminase-reductase domain protein [Proteus mirabilis ATCC 29906] Length = 190 Score = 38.5 bits (88), Expect = 1.5, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+ ++T L +G L ++GG V SF+N L+D +I+ R I++G GG P Sbjct: 108 ELQDIITELNAKGFNELYIDGGVTV-QSFLNEDLIDQMIITRFPILLG-GGTP 158 >gi|311694940|gb|ADP97813.1| cytidine/deoxycytidylate deaminase family protein [marine bacterium HP15] Length = 167 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 49/110 (44%), Gaps = 17/110 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA-YGGC---PHAEVQALEE 62 D R+M+ AL+ + V ++V DG IG G A GC HAE++AL + Sbjct: 8 DERWMNRALQLA--GEAAAKGEVPVGAVVVLDGKEIGAGFNAPISGCDPTAHAEIRALRD 65 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A AT YVTLEPC+ C I+ I R+V +P Sbjct: 66 AAARVGNYRLPDATLYVTLEPCTM------CVGAIVHGRISRLVYGAREP 109 >gi|304317923|ref|YP_003853068.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779425|gb|ADL69984.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 147 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE A+ +A G + AT YV+ PCS CA+ II GI+RVV D PD Sbjct: 77 HAEQNAIIQAALNGVSTKDATIYVSASPCSM------CAKMIINAGIKRVVYEGDYPD 128 >gi|148643446|ref|YP_001273959.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061] gi|261349766|ref|ZP_05975183.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374] gi|148552463|gb|ABQ87591.1| cytosine deaminase [Methanobrevibacter smithii ATCC 35061] gi|288860550|gb|EFC92848.1| cytosine deaminase [Methanobrevibacter smithii DSM 2374] Length = 158 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 70/164 (42%), Gaps = 22/164 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D F++ AL+ ++ L + ++VKDG +I RG + HAE+ +E Sbjct: 4 DTYFINEALKEAK--KSLAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIEN 61 Query: 63 AG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG E+ + Y TL PC P C+ I+ I +V++ + + G + Sbjct: 62 AGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVIIGEN-----TTLMGAEC 110 Query: 119 LSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L +K G+ V + E K Y+ E ++ K+ S D Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154 >gi|78777832|ref|YP_394147.1| cytosine deaminase [Sulfurimonas denitrificans DSM 1251] gi|78498372|gb|ABB44912.1| Cytosine deaminase [Sulfurimonas denitrificans DSM 1251] Length = 145 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 10/80 (12%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +F+ AA+ ++ GL + ++V DG ++GRG V HAE+ LE AG Sbjct: 3 KFLQAAIEEAK--KGLKEGGIPIGSVLVIDGKIVGRGHNRRVQDSSAILHAEMDCLENAG 60 Query: 65 E----EARGATAYVTLEPCS 80 E + A Y TL PCS Sbjct: 61 RMAASEYKKAILYSTLSPCS 80 >gi|124266938|ref|YP_001020942.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1] gi|124259713|gb|ABM94707.1| tRNA-adenosine deaminase [Methylibium petroleiphilum PM1] Length = 205 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 29/143 (20%) Query: 1 MPVSSFDARFMSAALRFS------RWHVGLTSTNPSVACLIVK--DGI--VIGRG----V 46 M S+ AR AA+R + W VG V +IV+ DG+ V+ G + Sbjct: 1 MSDSAEQARKDEAAMRLALDQAQNAWLVG----EVPVGAVIVREVDGVHQVVATGYNRPI 56 Query: 47 TAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 T + HAE+ AL A + YVTLEPC+ CA ++ +RVV Sbjct: 57 TTHDPTAHAEIVALRHAAQLLGNYRLPDCELYVTLEPCAM------CAMALVHARFKRVV 110 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI 124 DP +G + +Q+ + Sbjct: 111 YAAADPKTGAAGSVIDLFAQRQL 133 >gi|308066929|ref|YP_003868534.1| hypothetical protein PPE_00098 [Paenibacillus polymyxa E681] gi|305856208|gb|ADM67996.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 163 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 17/101 (16%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEARGATA------YVTLEPCS 80 + +IVKD +IGRG T HAE+ A+ +A E GA YVTLEPC Sbjct: 25 IGAVIVKDNEIIGRGYNLRETDADPTAHAEMVAIRQASEHL-GAWRLLDCRLYVTLEPC- 82 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 P CA I++ + ++ DP +G + L + Sbjct: 83 -----PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNLLQE 118 >gi|300865868|ref|ZP_07110611.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506] gi|300336131|emb|CBN55769.1| tRNA-adenosine deaminase [Oscillatoria sp. PCC 6506] Length = 169 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 50/115 (43%), Gaps = 16/115 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57 P+ ++MS A++ ++ G P A ++ G +I +G HAE+ Sbjct: 13 PIYLTHCQWMSRAIKLAQ-EAGEAGEVPVGAAIVDSQGKLIAQGQNRRERDCDPTAHAEI 71 Query: 58 QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 AL AG T YVTLEPC P CA I++ I +V VDDP Sbjct: 72 LALRGAGIALQNWHLNACTLYVTLEPC------PMCAGAIVQARIGLLVYGVDDP 120 >gi|159028687|emb|CAO88158.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 143 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 29 PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 P A ++ K G +I +G + HAE+ A+ A + G T YVTLEPC Sbjct: 18 PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAASQVLGNWHLNGCTLYVTLEPC 77 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 P CA II+ + +V DDP V Sbjct: 78 ------PMCAGAIIQARLGLLVYGADDPKTGV 103 >gi|260886275|ref|ZP_05897538.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC 35185] gi|330839740|ref|YP_004414320.1| dCMP deaminase [Selenomonas sputigena ATCC 35185] gi|260863994|gb|EEX78494.1| putative deoxycytidylate deaminase [Selenomonas sputigena ATCC 35185] gi|329747504|gb|AEC00861.1| dCMP deaminase [Selenomonas sputigena ATCC 35185] Length = 163 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 39/157 (24%), Positives = 63/157 (40%), Gaps = 42/157 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM AL FS++ S +P AC++ +D ++G G Y G P Sbjct: 4 SWDEYFMGIAL-FSKYR----SKDPHTQVGACIVNEDKHIVGVG---YNGMPNGCSDAEF 55 Query: 54 -----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 HAE+ A+ A +G Y +L PC+ C + II+ G Sbjct: 56 PWGSTGEFGDKKYAYVVHAELNAILNASTSLKGCRIYTSLFPCNE------CCKAIIQSG 109 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 I+ V+ D S R + + + R +E++ Sbjct: 110 IKEVIYLSDKYAATDSTRASKRMFAAAGVHYRRLETD 146 >gi|255320509|ref|ZP_05361690.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens SK82] gi|262378401|ref|ZP_06071558.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] gi|255302481|gb|EET81717.1| tRNA-specific adenosine deaminase [Acinetobacter radioresistens SK82] gi|262299686|gb|EEY87598.1| conserved hypothetical protein [Acinetobacter radioresistens SH164] Length = 163 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 19/128 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M FD + L + + + + V +IV + VIG G + + HAE Sbjct: 1 MQQHEFDDHYW-MQLAYEQAALAASKGEVPVGAVIVSNNQVIGVGHNQPIFKHDPTAHAE 59 Query: 57 VQALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV- 109 +QAL EA + + T YVTLEPC+ C +I ++RVV +P Sbjct: 60 IQALREACQLTQNYRLPDDTTLYVTLEPCTM------CVGALIHARVQRVVFGATEPKAG 113 Query: 110 -RVSGRGL 116 VS R L Sbjct: 114 SLVSARRL 121 >gi|302691412|ref|XP_003035385.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8] gi|300109081|gb|EFJ00483.1| hypothetical protein SCHCODRAFT_51868 [Schizophyllum commune H4-8] Length = 163 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 3/69 (4%) Query: 68 RGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG--I 124 R Y TLEPCS PCA +I G+RR + V +PD V G + L G I Sbjct: 86 RQVDVYTTLEPCSIRTSGLAPCADALIAAGVRRCFIGVGEPDDFVQCEGARKLKDAGVEI 145 Query: 125 IVDRMMESE 133 + + ME E Sbjct: 146 VWLKGMEEE 154 >gi|282899006|ref|ZP_06306988.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein [Cylindrospermopsis raciborskii CS-505] gi|281196146|gb|EFA71061.1| Cytidine/deoxycytidylate deaminase, zinc-binding region protein [Cylindrospermopsis raciborskii CS-505] Length = 154 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 49/107 (45%), Gaps = 18/107 (16%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTA----YGGCPHAEVQALEEAGE 65 MS AL+ ++ + + V C+IV G +IG+G HAE+ A+ A Sbjct: 1 MSEALKLAQ--IAGDAGEVPVGCVIVNPQGNLIGQGENRKQRDQDPTAHAEIIAIRSAAR 58 Query: 66 EARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + T YVTLEPC P CA II ++ +V VDDP Sbjct: 59 TLQNWHLDQCTLYVTLEPC------PMCAGAIIHARLQTLVYAVDDP 99 >gi|261868753|ref|YP_003256675.1| tRNA-specific adenosine deaminase [Aggregatibacter actinomycetemcomitans D11S-1] gi|261414085|gb|ACX83456.1| tRNA-specific adenosine deaminase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 175 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 16/112 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 + D +FM AL + L P A L+ + G +IG G + HAE+ Sbjct: 6 TQLDEKFMHHALMLAGKAEALGEI-PVGAVLVSEAGEIIGEGWNLSIIHSDPTAHAEIVT 64 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L + G++ + T YVTLEPC+ CA I+ I+R+V D Sbjct: 65 LRQGGQKLQNYRLLNTTLYVTLEPCT------MCAGAILHSRIKRLVFGAAD 110 >gi|46199478|ref|YP_005145.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] gi|61217297|sp|Q72IF6|TILS_THET2 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|46197104|gb|AAS81518.1| putative cell cycle protein mesJ-like protein [Thermus thermophilus HB27] Length = 507 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 19/26 (73%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPC 79 HAE+ L EAG EARG YVTLEPC Sbjct: 420 HAEMLLLREAGPEARGGRLYVTLEPC 445 >gi|118483842|gb|ABK93812.1| unknown [Populus trichocarpa] Length = 229 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++GI++G G + GC HAEV A L Sbjct: 95 ACLVSQNGIILGIGYNGFPRGCSDDKLPWAKKSKSGDPLETKYPYVCHAEVNAILNTNHA 154 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ II+ G+ V+ V+ Sbjct: 155 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188 >gi|55981511|ref|YP_144808.1| cell cycle protein MesJ [Thermus thermophilus HB8] gi|61217197|sp|Q5SI38|TILS_THET8 RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|55772924|dbj|BAD71365.1| probable cell cycle protein MesJ [Thermus thermophilus HB8] Length = 507 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/26 (69%), Positives = 19/26 (73%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPC 79 HAE+ L EAG EARG YVTLEPC Sbjct: 420 HAEMLLLREAGPEARGGRLYVTLEPC 445 >gi|259907686|ref|YP_002648042.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96] gi|224963308|emb|CAX54793.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae Ep1/96] gi|310764806|gb|ADP09756.1| tRNA-specific adenosine deaminase [Erwinia sp. Ejp617] Length = 166 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 53/126 (42%), Gaps = 21/126 (16%) Query: 10 FMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA 63 +M ALR +R W G V ++V DG IG G + + HAE+ AL + Sbjct: 9 WMRHALRLARRAWDEG----EVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQG 64 Query: 64 G---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G E R T YVTLEPC CA +I + R+V D +G L Sbjct: 65 GKVIENYRLLDTTLYVTLEPCV------MCAGAMIHGRVGRLVYGARDAKTGAAGSLLDV 118 Query: 119 LSQKGI 124 L G+ Sbjct: 119 LGHAGM 124 >gi|224136175|ref|XP_002322258.1| predicted protein [Populus trichocarpa] gi|222869254|gb|EEF06385.1| predicted protein [Populus trichocarpa] Length = 229 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++GI++G G + GC HAEV A L Sbjct: 95 ACLVSQNGIILGIGYNGFPRGCSDDKLPWAKKSKSGDPLETKYPYVCHAEVNAILNTNHA 154 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ II+ G+ V+ V+ Sbjct: 155 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188 >gi|118444046|ref|YP_879269.1| cytidine/deoxycytidylate deaminase family protein, pytative [Clostridium novyi NT] gi|118134502|gb|ABK61546.1| cytidine/deoxycytidylate deaminase family protein, pytative [Clostridium novyi NT] Length = 147 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 17/117 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 D +FM AL ++ + V +IVK+G VI T HAE+ A++ Sbjct: 1 MDKKFMEIALDEAK--IAALKDEVPVGAVIVKNGEVIASAHNLRETLNDPTAHAEILAIK 58 Query: 62 EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +A + YVTLEPC P C+ I++ IR++ + DP + G Sbjct: 59 KASSILKNWRLNECEMYVTLEPC------PMCSGAILQSRIRKLYIGTIDPSMGCCG 109 >gi|325679436|ref|ZP_08159020.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] gi|324108864|gb|EGC03096.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] Length = 159 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A+ + + +G+ YV+L PC+ CA+ II+ GI+ V+ D Sbjct: 71 TKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123 >gi|260221448|emb|CBA30021.1| hypothetical protein Csp_A15070 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 408 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 49/116 (42%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVTAYGGCP--HAEVQALEE 62 D FMS AL L P V +IVK G VI GR T P HAEV AL+E Sbjct: 7 DEYFMSLALE-QAIEAELAGEVP-VGAVIVKGGQVIAKGRNRTIEWNDPSAHAEVVALKE 64 Query: 63 AG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A G +VTLEPC+ C+ I I RVV DP +G Sbjct: 65 AARACGTHRLSGLQLFVTLEPCA------MCSGAIFHGRIERVVFGAADPKTGCAG 114 >gi|169825638|ref|YP_001695796.1| hypothetical protein Bsph_0024 [Lysinibacillus sphaericus C3-41] gi|168990126|gb|ACA37666.1| Hypothetical yaaJ protein [Lysinibacillus sphaericus C3-41] Length = 170 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 17/115 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M + D FM AL ++ L + ++V DG +I R T HAE Sbjct: 1 MDIFETDRLFMKQALEEAKKAAILGEV--PIGAVLVYDGEIIARAHNLRETTQNATTHAE 58 Query: 57 VQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + ++EA ++ T YVTLEPC P CA I++ + RVV D Sbjct: 59 LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARD 107 >gi|226328060|ref|ZP_03803578.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198] gi|225203764|gb|EEG86118.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198] Length = 176 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D +I +G + HAE+ AL + G+ + AT Y+TLEPC Sbjct: 29 VGAVLVVDNKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA I+ ++RVV D +G + L G+ Sbjct: 88 -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125 >gi|329902676|ref|ZP_08273230.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium IMCC9480] gi|327548648|gb|EGF33298.1| tRNA-specific adenosine-34 deaminase [Oxalobacteraceae bacterium IMCC9480] Length = 161 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 21/126 (16%) Query: 7 DARFMSAAL--RFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D+ FM A+ + W +G V ++VKDG VI G + + HAE+ AL Sbjct: 3 DSVFMRLAMDQAHNAWALG----EVPVGAVLVKDGQVIATGFNQSIGTHDPTAHAEIMAL 58 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 G YVTLEPC+ CA ++ + RVV DP G Sbjct: 59 RAGASLLGNYRLPGCELYVTLEPCAM------CAGAMMHARLARVVYGASDPKTGCCGSV 112 Query: 116 LQWLSQ 121 L Q Sbjct: 113 LDLFGQ 118 >gi|89255310|ref|NP_660001.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CFN 42] gi|218674568|ref|ZP_03524237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli GR56] gi|89213264|gb|AAM55014.2| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CFN 42] gi|327191679|gb|EGE58686.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CNPAF512] Length = 233 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279 +I+D +L D I+ A L V+ ++ DD LA + ++ I D DLK L Sbjct: 90 VIVDKDGRLRWDKSDIEGAHLV-VLTGSDVDDAYLA-GLTQAGVSYIVSEKDGVDLKNAL 147 Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 +L GV L++EGGA F+ + LVD + L + G+ P+ E G Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSNTPAIFEGG 201 >gi|62185341|ref|YP_220126.1| putative cytidine/deoxycytidylate deaminase family protein [Chlamydophila abortus S26/3] gi|62148408|emb|CAH64175.1| putative cytidine/deoxycytidylate deaminase family protein [Chlamydophila abortus S26/3] Length = 157 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/123 (31%), Positives = 51/123 (41%), Gaps = 20/123 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D FM+ AL+ +R V C+IVKD +I RG HAE+ + Sbjct: 6 DIFFMNQALKEAR--QAYDEDEVPVGCVIVKDNKIIARGHNTTEKLQDPTAHAEILCIGA 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + Y TLEPC CA I IRR+V PD+R+ G G Sbjct: 64 AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAA--PDLRL-GAGGS 114 Query: 118 WLS 120 WL+ Sbjct: 115 WLN 117 >gi|160900241|ref|YP_001565823.1| CMP/dCMP deaminase [Delftia acidovorans SPH-1] gi|160365825|gb|ABX37438.1| CMP/dCMP deaminase zinc-binding [Delftia acidovorans SPH-1] Length = 475 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGVTA--YGGCP--HAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IVKDG ++G+G A G P HAEV AL +A T YVTLEPC+ Sbjct: 55 VGAVIVKDGAIVGQGRNAPVAQGDPTAHAEVLALRDAAARLGNYRLDDCTLYVTLEPCTM 114 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C+ ++ + RVV +P +G Sbjct: 115 ------CSGAMLHARLGRVVYGAAEPRTGAAG 140 >gi|282600107|ref|ZP_05973017.2| tRNA-specific adenosine deaminase [Providencia rustigianii DSM 4541] gi|282566416|gb|EFB71951.1| tRNA-specific adenosine deaminase [Providencia rustigianii DSM 4541] Length = 176 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V L+VKD +I G + + HAE+ L++AG+ + T YVTLEPC Sbjct: 38 VGALLVKDNQLIATGWNHSIEQHDPTAHAEIITLQQAGKILKNYRLLDTTLYVTLEPC-- 95 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D G + + Q G+ Sbjct: 96 ----IMCAGAMIHSRIGRVVYGAKDFKTGACGSFINIMGQAGL 134 >gi|321478485|gb|EFX89442.1| hypothetical protein DAPPUDRAFT_190827 [Daphnia pulex] Length = 217 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + RG T YV L PC+ CA+ II+ GI++VV D Sbjct: 119 TKYMYVCHAEMNAIMNKNTADLRGCTLYVALFPCNE------CAKLIIQAGIKQVVYMSD 172 Query: 106 DPDVRVSGRGLQWL-SQKGIIVDRMMESEGKIFL 138 + S + + S G+ + + KI + Sbjct: 173 KHKNKPSTEASKMMFSMAGVKCQQFVPKNSKIVI 206 >gi|291548233|emb|CBL21341.1| Deoxycytidylate deaminase [Ruminococcus sp. SR1/5] Length = 164 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 37/127 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM A+ G+ S +P AC++ +D ++ G + GC Sbjct: 13 SWDEYFMGVAML-----SGMRSKDPHSQVGACIVSEDNKILSMGYNGFPKGCSDDEFPWG 67 Query: 54 --------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 H+E+ A L G GA YV+L PC+ CA+ II+ GIR Sbjct: 68 REGDPLDTKYLYVTHSELNAILNYRGGSLEGAKLYVSLFPCNE------CAKAIIQAGIR 121 Query: 99 RVVVCVD 105 +V D Sbjct: 122 TIVYDCD 128 >gi|301111742|ref|XP_002904950.1| deoxycytidylate deaminase [Phytophthora infestans T30-4] gi|262095280|gb|EEY53332.1| deoxycytidylate deaminase [Phytophthora infestans T30-4] Length = 252 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 53/130 (40%), Gaps = 40/130 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FMS A + S +PS AC++ + ++G G + GC Sbjct: 94 SWDDYFMSVAFL-----SAMRSKDPSTQVGACIVNPERKIVGIGYNGFPNGCGDDELPWA 148 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A L + + +G + YV L PC+ CA+ II+ Sbjct: 149 RETATNSPLDTKYPYVCHAEMNAILNKNSTDVKGCSIYVALFPCNE------CAKLIIQS 202 Query: 96 GIRRVVVCVD 105 GI RVV D Sbjct: 203 GIARVVYFSD 212 >gi|190894029|ref|YP_001984323.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CIAT 652] gi|190699690|gb|ACE93773.1| probable 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CIAT 652] Length = 233 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 5/114 (4%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLL 279 +I+D +L D I+ A L V+ ++ DD LA + ++ I D DLK L Sbjct: 90 VIVDKDGRLRWDKSDIEGAHLV-VLTGSDVDDAYLA-GLTQAGVSYIVSEKDGVDLKNAL 147 Query: 280 TILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 +L GV L++EGGA F+ + LVD + L + G+ P+ E G Sbjct: 148 DLLGTEFGVKRLMLEGGAQTNGHFLKAGLVDEVSLVIFPAIGGKSSTPAIFEGG 201 >gi|294495182|ref|YP_003541675.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii DSM 5219] gi|292666181|gb|ADE36030.1| CMP/dCMP deaminase zinc-binding protein [Methanohalophilus mahii DSM 5219] Length = 147 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 20/146 (13%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +FM A+ + G + ++V+DG++IGRG V HAE+ + +AG Sbjct: 3 QFMKEAI--NEAMAGRDKGGIPIGSVLVRDGMIIGRGHNLRVQNDDPLAHAEISCMRDAG 60 Query: 65 EEARGATA--YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-WLSQ 121 A Y TL PC CA +++ GI++VVV + + G Q +L Sbjct: 61 RIGSYADTVLYSTLMPCY------LCAGAVVQFGIKKVVVGESE-----TFEGAQDFLRS 109 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVE 147 KG+ V + SE K + ++ E Sbjct: 110 KGVEVVDLGLSECKTLMKEFIREYPE 135 >gi|229039926|ref|ZP_04189692.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676] gi|228727416|gb|EEL78607.1| hypothetical protein bcere0027_100 [Bacillus cereus AH676] Length = 166 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|229083334|ref|ZP_04215694.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44] gi|228699981|gb|EEL52606.1| hypothetical protein bcere0022_180 [Bacillus cereus Rock3-44] Length = 165 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG V+ T HAE+ A++EA ++ AT YVTLEPC Sbjct: 26 IGAVIVLDGEVVSVAHNLRETEQRSIAHAELLAIDEACKKLGTWRLENATLYVTLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V +ME E Sbjct: 84 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVMEEECGT 139 Query: 137 FLHAYL 142 L + Sbjct: 140 LLTNFF 145 >gi|225181888|ref|ZP_03735323.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1] gi|225167402|gb|EEG76218.1| CMP/dCMP deaminase zinc-binding [Dethiobacter alkaliphilus AHT 1] Length = 158 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 17/109 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 D FM AL+ + + + ++V+DG +I R HAE+ L E Sbjct: 3 DQDFMREALKEA--QLAFEKGEIPIGAVLVRDGNIIARDHNRREELDDPTAHAEILVLRE 60 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 AG G T YVT+EPC P CA +++ + RVV D Sbjct: 61 AGRTLGGWRLPNTTLYVTIEPC------PMCAGGLVQARVARVVYGAAD 103 >gi|262370390|ref|ZP_06063716.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] gi|262314732|gb|EEY95773.1| conserved hypothetical protein [Acinetobacter johnsonii SH046] Length = 166 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 32/167 (19%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 V D+ +M AL + + + V +IV +IG G +T HAEVQ Sbjct: 4 VLKIDSEWMQLALE--QAAIAASKGEVPVGAVIVSQNKIIGSGFNAPITLNDPTAHAEVQ 61 Query: 59 ALEEAGEEARG------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV--R 110 AL +A + + A YVTLEPC+ C ++ + +VV +P Sbjct: 62 ALRDACQNTQNYRLPDDAVMYVTLEPCTM------CVGALVHARVSKVVFGATEPKAGSL 115 Query: 111 VSGRGL--------QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149 +S R L Q+L + G + ++ + H + R+ +KR Sbjct: 116 ISARKLFETGYYNHQFLVESGCLHEQCSQQ----LSHFFKMRREQKR 158 >gi|222445686|ref|ZP_03608201.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii DSM 2375] gi|222435251|gb|EEE42416.1| hypothetical protein METSMIALI_01327 [Methanobrevibacter smithii DSM 2375] Length = 158 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 42/164 (25%), Positives = 69/164 (42%), Gaps = 22/164 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D F++ AL ++ L + ++VKDG +I RG + HAE+ +E Sbjct: 4 DTYFINEALNEAK--KSLAEGGIPIGAVLVKDGKIISRGHNRLIQNDSVILHAEIDTIEN 61 Query: 63 AG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG E+ + Y TL PC P C+ I+ I +VV+ + + G + Sbjct: 62 AGRLNHEDYLQSVLYTTLSPC------PMCSGAILLYNIPKVVIGEN-----TTLMGAEC 110 Query: 119 LSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L +K G+ V + E K Y+ E ++ K+ S D Sbjct: 111 LLEKNGVEVVVLNNLECKKLFEKYVEENPESWNNELSKVGNSTD 154 >gi|167766023|ref|ZP_02438076.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1] gi|167712103|gb|EDS22682.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1] Length = 161 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 + ++M A++ ++ + P + C+IV+D +I R HAE+ A+++ Sbjct: 4 EEKYMKEAIKQAK-KAAVIGDVP-IGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAIQK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T Y+TLEPC CA I++ I +VV+ +P +G L Sbjct: 62 ASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSVLN 115 Query: 118 WLS 120 L Sbjct: 116 ILQ 118 >gi|145298514|ref|YP_001141355.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp. salmonicida A449] gi|142851286|gb|ABO89607.1| cytosine/adenosine deaminase [Aeromonas salmonicida subsp. salmonicida A449] Length = 199 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 15/115 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---GRGVTAYGGCPHAEVQALEEA 63 D R+M A+ + G+ P A L++ D +V R ++ + C HAE+ A+ A Sbjct: 36 DERWMRHAMALAARAEGIGEI-PVGAVLVLGDEVVGEGGNRSISEHDACAHAEIMAIRAA 94 Query: 64 G---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 G E R YVTLEPC CA +I ++RVV D +G Sbjct: 95 GARLENYRLIDTVLYVTLEPCC------MCAGALIHSRVKRVVFGARDLKTGAAG 143 >gi|321254677|ref|XP_003193159.1| hypothetical protein CGB_C9470W [Cryptococcus gattii WM276] gi|317459628|gb|ADV21372.1| hypothetical protein CNC00250 [Cryptococcus gattii WM276] Length = 1858 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 68 RGATAYVTLEPCSHYGRS-PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 + A Y TLEPCS+ P CA ++ G+R V + V++P V G++ L G+ V Sbjct: 1780 KDAVCYATLEPCSYRTSGGPSCALELVRAGVRAVYLGVEEPPDFVECEGVRILQDGGVRV 1839 Query: 127 DRMM 130 R + Sbjct: 1840 VRAV 1843 >gi|297587228|ref|ZP_06945873.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516] gi|297575209|gb|EFH93928.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516] Length = 155 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 11/82 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D +FM A+ ++ + V C+IVKDG +I + + HAE++A+ + Sbjct: 5 DEKFMMKAIEQAKIAYDMDEV--PVGCVIVKDGEIIAQAYNSVEKDKNATMHAELKAINQ 62 Query: 63 AGE-----EARGATAYVTLEPC 79 A E YVTLEPC Sbjct: 63 ATEFIGNFRLDDCIMYVTLEPC 84 >gi|226503799|ref|NP_001152254.1| deoxycytidylate deaminase [Zea mays] gi|195654307|gb|ACG46621.1| deoxycytidylate deaminase [Zea mays] gi|223948705|gb|ACN28436.1| unknown [Zea mays] Length = 228 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM+ A + S +P+ ACL+ ++GI++G G + GC Sbjct: 69 SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAEV A L A G YVT+ PC+ CA+ II+ Sbjct: 124 KKSASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177 Query: 96 GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 G+ V+ V+ D V + LS G+ V + +I Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQI 221 >gi|323702624|ref|ZP_08114286.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum nigrificans DSM 574] gi|323532443|gb|EGB22320.1| CMP/dCMP deaminase zinc-binding protein [Desulfotomaculum nigrificans DSM 574] Length = 149 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G +G+T YVT +PC CA+ I+ GI++VV D PD Sbjct: 77 HAEQNALLQAAVHGIAIQGSTIYVTHQPCV------LCAKMIVNAGIKKVVFAGDYPD 128 >gi|297172082|gb|ADI23064.1| cytosine/adenosine deaminases [uncultured gamma proteobacterium HF0770_07M15] Length = 150 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 55/135 (40%), Gaps = 25/135 (18%) Query: 31 VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEA------RGATAYVTLEPCS 80 V ++V++G VI R HAE+ AL A E A G T YVT EPC Sbjct: 19 VGAVVVREGAVIARAWNQVELLKDATAHAEMIALT-AAEAAVGDWRLTGCTLYVTKEPC- 76 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGK 135 P CA ++ C I RVV DP +G + L + I +ME + + Sbjct: 77 -----PMCAGALVHCRIDRVVFGATDPRGGAAGGAMNLLQFPTLNHACDITGGVMEPDCR 131 Query: 136 IFLHAYLTRQVEKRS 150 L + EKR Sbjct: 132 NLLQTFFK---EKRK 143 >gi|317403100|gb|EFV83631.1| zinc-binding hydrolase [Achromobacter xylosoxidans C54] Length = 163 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 53/121 (43%), Gaps = 16/121 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ DA FM+ AL +R + P A ++ G ++GRG + + HAE+ Sbjct: 6 PWTAQDADFMTLALDEARAAYDIGEV-PVGALVVSAQGDILGRGYNRTIIDHDPTAHAEI 64 Query: 58 QALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL A E R G T YVTLEPC C ++ + RVV DP Sbjct: 65 VALRGAARALENYRLPGITVYVTLEPCVM------CIGAMLHARLARVVFGAYDPKTGAC 118 Query: 113 G 113 G Sbjct: 119 G 119 >gi|256823046|ref|YP_003147009.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069] gi|256796585|gb|ACV27241.1| CMP/dCMP deaminase zinc-binding [Kangiella koreensis DSM 16069] Length = 159 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 48/127 (37%), Gaps = 17/127 (13%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59 + FD M A F + V ++ KDG + G + HAE+ Sbjct: 5 TDFDQHCMQRA--FDLASIAEEKGEVPVGAVLAKDGEIKTEGFNQPIFNHDPTAHAEMVV 62 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 L AG++ T YVTLEPC+ CA ++ + RVV DP +G Sbjct: 63 LRAAGQKLDNYRLVDTTLYVTLEPCAM------CAMAMVHARVSRVVFATTDPRTGAAGS 116 Query: 115 GLQWLSQ 121 L L Sbjct: 117 VLNILQN 123 >gi|184157936|ref|YP_001846275.1| cytosine/adenosine deaminase [Acinetobacter baumannii ACICU] gi|332872773|ref|ZP_08440739.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6014059] gi|183209530|gb|ACC56928.1| Cytosine/adenosine deaminase [Acinetobacter baumannii ACICU] gi|322508255|gb|ADX03709.1| Putative deaminase [Acinetobacter baumannii 1656-2] gi|323517881|gb|ADX92262.1| cytosine/adenosine deaminase [Acinetobacter baumannii TCDC-AB0715] gi|332739070|gb|EGJ69931.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6014059] Length = 167 Score = 38.1 bits (87), Expect = 1.9, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|218290658|ref|ZP_03494749.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] gi|218239323|gb|EED06521.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] Length = 151 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 31/127 (24%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTA--YG-------GCP----------HAEVQALEEA-- 63 T T V C+IV+D +I G +G GC HAE AL + Sbjct: 26 TCTRLQVGCVIVRDKRIIASGYNGSIHGDEHCVDVGCKVVDGHCVRAIHAEQNALLQCAR 85 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G A GA YVT PC C + +I+ GIRRV + + R + LS+ Sbjct: 86 FGIAAEGADLYVTHTPC------LTCTKSLIQAGIRRVFY---EFEYRPDPYATELLSKA 136 Query: 123 GIIVDRM 129 G++V+++ Sbjct: 137 GVVVEQV 143 >gi|229491248|ref|ZP_04385074.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus erythropolis SK121] gi|229321787|gb|EEN87582.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus erythropolis SK121] Length = 249 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 12/153 (7%) Query: 180 KNQVHLLRAQSDAILVGIGTVLA---------DDPELTCRLNGLQEHSPMRIILDPHFKL 230 K+ +LR D ++VG GT A D+ +GL P+ +++ H + Sbjct: 57 KSVFGILRELCDVVVVGAGTARAENYGGVQVSDEARARRTADGLAPVPPI-LVVSAHASI 115 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVT 288 +S++++ + P+++V + D A R + D ++ + L R + Sbjct: 116 DSESRLLRDTEVPPILVVGRDADSAAISALRSAGAQVEVTDSPNVTSGDIDRALSARKLR 175 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +L EGG ++ I VD + + S ++G Sbjct: 176 RVLCEGGPSLFGQLIEDNAVDELCITTSPQLVG 208 >gi|319655047|ref|ZP_08009117.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2] gi|317393271|gb|EFV74039.1| cytidine/deoxycytidylate deaminase [Bacillus sp. 2_A_57_CT2] Length = 178 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 19/118 (16%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPH 54 M +SF D +M A++ ++ GL + +IV +G +I R H Sbjct: 1 MRQASFTEDELYMQEAIKEAKLAEGLEEV--PIGAVIVLEGEIIARAHNLREVNQTAIAH 58 Query: 55 AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 AE+ A+++A + A YVTLEPC P C+ II I++VV DP Sbjct: 59 AELLAIDQACKNLGTWRLENAVLYVTLEPC------PMCSGSIILSRIKKVVYGAKDP 110 >gi|317499420|ref|ZP_07957687.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lachnospiraceae bacterium 5_1_63FAA] gi|316893292|gb|EFV15507.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lachnospiraceae bacterium 5_1_63FAA] Length = 161 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 17/123 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 + ++M A++ ++ + P + C+IV+D +I R HAE+ A+++ Sbjct: 4 EEKYMKEAIKQAK-KAAVIGDVP-IGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAIQK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T Y+TLEPC CA I++ I +VV+ +P +G L Sbjct: 62 ASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSVLN 115 Query: 118 WLS 120 L Sbjct: 116 ILQ 118 >gi|146293740|ref|YP_001184164.1| CMP/dCMP deaminase, zinc-binding [Shewanella putrefaciens CN-32] gi|145565430|gb|ABP76365.1| tRNA-adenosine deaminase [Shewanella putrefaciens CN-32] Length = 164 Score = 38.1 bits (87), Expect = 2.0, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L AG++ AT Y+TLEPC+ Sbjct: 24 VGAVLVKDGQQIATGYNLSISQHDPTAHAEILCLRSAGKKLENYRLLDATLYITLEPCAM 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 84 ------CAGAMVHSRIARVVYGARDEKTGAAG 109 >gi|332528366|ref|ZP_08404366.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624] gi|332042237|gb|EGI78563.1| CMP/dCMP deaminase [Hylemonella gracilis ATCC 19624] Length = 375 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 11/76 (14%) Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+QAL AG T YVTLEPC P CA ++ ++RVV DP Sbjct: 59 HAEMQALRAAGSVLGNYRLDDCTLYVTLEPC------PMCAGAMLHARLKRVVYGAADPK 112 Query: 109 VRVSGRGLQWLSQKGI 124 +G L + + + Sbjct: 113 TGAAGSVLDLFAHRQL 128 >gi|300724136|ref|YP_003713453.1| TadA, tRNA -specific adenosine deaminase [Xenorhabdus nematophila ATCC 19061] gi|297630670|emb|CBJ91335.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus nematophila ATCC 19061] Length = 170 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 22/139 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V D ++ G +T + HAE+ AL + G + T YVTLEPC Sbjct: 35 VGAILVADNEILAEGFNLPITYHDPTAHAEIIALRQGGSRLQNYRLLNTTLYVTLEPCVM 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 CA ++ I+R+V D +G + L G+ I+ ++ E Sbjct: 95 ------CAGAMVHSRIKRLVYGASDMKTGAAGSLIDILRHPGMNHQIEIIGGVLAEECST 148 Query: 137 FLHAYLTRQVEKRSHITLK 155 L ++ ++ E+ H LK Sbjct: 149 MLSSFFKQRREQ--HKALK 165 >gi|73541535|ref|YP_296055.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134] gi|72118948|gb|AAZ61211.1| tRNA-adenosine deaminase [Ralstonia eutropha JMP134] Length = 177 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 53/124 (42%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D R++ AA+ +R + + V ++V + +I RG + + HAE+QAL Sbjct: 13 DERYLRAAMDEAR--LAEAAGEVPVGAVVVWNDAIIARGHNLPIKSMDPSAHAEMQALRA 70 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVTLEPC+ C+ I+ +R VV DP +G + Sbjct: 71 AAQVLGNYRMPECELYVTLEPCAM------CSGAILHARLRHVVFGASDPKTGAAGSVVN 124 Query: 118 WLSQ 121 Q Sbjct: 125 LFEQ 128 >gi|30018294|ref|NP_829925.1| cytosine deaminase [Bacillus cereus ATCC 14579] gi|229125538|ref|ZP_04254572.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4] gi|29893834|gb|AAP07126.1| Cytosine deaminase [Bacillus cereus ATCC 14579] gi|228657922|gb|EEL13726.1| hypothetical protein bcere0015_100 [Bacillus cereus BDRD-Cer4] Length = 166 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|237748387|ref|ZP_04578867.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] gi|229379749|gb|EEO29840.1| conserved hypothetical protein [Oxalobacter formigenes OXCC13] Length = 241 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 4/120 (3%) Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-- 270 G E + M I++DP K+ S I + ++++ E+ R+ I+ ++ Sbjct: 82 GTCETARMCIVMDPKGKIRYSSDRIMGENI--IVVLGESVSQSYLEHLRELGISYLFAGR 139 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL K L L G+ ++++GG + SF+ + L+D + L + G GIP+ E Sbjct: 140 HGNDLNKALETLGEFGLRKIMLQGGGIINGSFLKAGLIDELSLLIYPGIDGRAGIPAVFE 199 >gi|195627622|gb|ACG35641.1| deoxycytidylate deaminase [Zea mays] Length = 228 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 65/164 (39%), Gaps = 43/164 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM+ A + S +P+ ACL+ ++GI++G G + GC Sbjct: 69 SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 123 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAEV A L A G YVT+ PC+ CA+ II+ Sbjct: 124 KKSASGDPLETKFPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 177 Query: 96 GIRRVVVCVD---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 G+ V+ V+ D V + LS G+ V + +I Sbjct: 178 GVSEVIYFVEKKIDNSAHVYVASHKLLSMAGVKVRKHQPQMAQI 221 >gi|308813003|ref|XP_003083808.1| cytidine/deoxycytidylate deaminase family protein (ISS) [Ostreococcus tauri] gi|116055690|emb|CAL57775.1| cytidine/deoxycytidylate deaminase family protein (ISS) [Ostreococcus tauri] Length = 290 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 40/126 (31%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FMS A ++ S +P+ AC++ +D +++G G + GC Sbjct: 99 SWDDYFMSVAFLSAQ-----RSKDPNKQVGACIVGEDKLILGVGYNGFPRGCADSALPWA 153 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A + + G T YVT+ PC+ CA+ II+ Sbjct: 154 KKSTNGDELETKYPYVCHAEMNAIMNKNSASVAGGTLYVTMYPCNE------CAKLIIQA 207 Query: 96 GIRRVV 101 GIR VV Sbjct: 208 GIREVV 213 >gi|120598186|ref|YP_962760.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1] gi|120558279|gb|ABM24206.1| tRNA-adenosine deaminase [Shewanella sp. W3-18-1] Length = 164 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VKDG I G ++ + HAE+ L AG++ AT Y+TLEPC+ Sbjct: 24 VGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLRSAGKKLENYRLLDATLYITLEPCAM 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I RVV D +G Sbjct: 84 ------CAGAMVHSRIARVVYGARDEKTGAAG 109 >gi|229142827|ref|ZP_04271271.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24] gi|229148430|ref|ZP_04276688.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550] gi|296500855|ref|YP_003662555.1| cytosine deaminase [Bacillus thuringiensis BMB171] gi|228635039|gb|EEK91610.1| hypothetical protein bcere0011_100 [Bacillus cereus m1550] gi|228640641|gb|EEK97027.1| hypothetical protein bcere0012_100 [Bacillus cereus BDRD-ST24] gi|296321907|gb|ADH04835.1| cytosine deaminase [Bacillus thuringiensis BMB171] Length = 166 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|28895070|ref|NP_801420.1| hypothetical protein SPs0158 [Streptococcus pyogenes SSI-1] gi|28810315|dbj|BAC63253.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1] Length = 160 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 9/58 (15%) Query: 31 VACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 + C+IVKDG +IGRG A HAE+ A+ EA T +VT+EPC Sbjct: 19 IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPC 76 >gi|261364637|ref|ZP_05977520.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996] gi|288567233|gb|EFC88793.1| tRNA-specific adenosine deaminase [Neisseria mucosa ATCC 25996] Length = 243 Score = 38.1 bits (87), Expect = 2.1, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 66/154 (42%), Gaps = 23/154 (14%) Query: 4 SSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQ 58 +SF+ FM AAL + + V ++V D +I V+ + HAE++ Sbjct: 91 TSFEMETFMRAALVQAEQSARIGEI--PVGAVVVADNQIIAAAHNTCVSDHDISRHAEIR 148 Query: 59 ALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL AG + Y+TLEPC+ CA II+ +RRV+ +P +G Sbjct: 149 ALAVAGAALQNYRLDECDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGAAG 202 Query: 114 RGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142 + L++ I ++E E K L A+ Sbjct: 203 SVVNLFANPLLNKHTAIKGGILEDECKDVLQAFF 236 >gi|319941641|ref|ZP_08015965.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B] gi|319804871|gb|EFW01725.1| cytosine deaminase [Sutterella wadsworthensis 3_1_45B] Length = 328 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/109 (36%), Positives = 47/109 (43%), Gaps = 17/109 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEV----- 57 D FM AL ++ G+ P V ++V DG VI RG T G P HAE+ Sbjct: 163 DRSFMRMALEEAQ-EAGMAGEIP-VGAVVVADGKVIARGGNETLRSGDPTAHAEIVALRA 220 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A A T YVTLEPC P CA I E RR+V D Sbjct: 221 AAAALANHRLTNTTLYVTLEPC------PMCAGAIAEARCRRIVYGAGD 263 >gi|307202968|gb|EFN82184.1| Deoxycytidylate deaminase [Harpegnathos saltator] Length = 181 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 44/137 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 ++D FM+ A ++ S +P AC++ D +IG G Y G P Sbjct: 14 AWDEYFMAVAFLSAQ-----RSKDPYTQVGACIVNNDNKIIGIG---YNGMPIGCSDDVF 65 Query: 54 ------------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 HAEV A L + + + T YV L PC+ CA+ II+ Sbjct: 66 PWNKGSYSSLDSKYLYVCHAEVNAVLNKNSSDCKDCTIYVALFPCNE------CAKVIIQ 119 Query: 95 CGIRRVVVCVDDPDVRV 111 GIR V+ D +V Sbjct: 120 SGIRTVIYMSDKSSDKV 136 >gi|154248745|ref|YP_001409570.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1] gi|154152681|gb|ABS59913.1| CMP/dCMP deaminase zinc-binding [Fervidobacterium nodosum Rt17-B1] Length = 170 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE AL +A G GAT YVT +PCS CA+ II GI++VV PD Sbjct: 96 HAEQNALIQAAKFGISTDGATIYVTHKPCS------VCARLIINAGIKKVVYIEGYPD 147 >gi|42561111|ref|NP_975562.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492608|emb|CAE77204.1| dCMP deaminase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|256384072|gb|ACU78642.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384904|gb|ACU79473.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455570|gb|ADH21805.1| deoxycytidylate deaminase (dCMP deaminase) [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|301320471|gb|ADK69114.1| cytidine and deoxycytidylate deaminase zinc-binding region [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 160 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 Y HAE+ A+ + + YVTL PC+ CA+ II+ GI+R+ D Sbjct: 72 NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 124 >gi|58389825|ref|XP_317305.2| AGAP008158-PA [Anopheles gambiae str. PEST] gi|55237525|gb|EAA12688.2| AGAP008158-PA [Anopheles gambiae str. PEST] Length = 180 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 33/107 (30%) Query: 26 STNPSV---ACLIVKDGIVIGRGVTAY-GGCP----------------------HAEVQA 59 S +PS AC++ +D ++G G + GC HAEV A Sbjct: 44 SKDPSTQVGACIVNEDNRIVGIGYNGFPKGCSDDEFPWSKTSDNPLETKYLYVCHAEVNA 103 Query: 60 -LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 L + + R T YV L PC+ CA+ II+ IR VV D Sbjct: 104 ILNKNSTDVRNCTMYVALFPCNE------CAKIIIQSAIREVVYMSD 144 >gi|301756412|ref|XP_002914055.1| PREDICTED: deoxycytidylate deaminase-like [Ailuropoda melanoleuca] Length = 178 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFISD 130 Query: 106 ---DPDVRVSGRGL 116 D D + R L Sbjct: 131 KYHDSDEMTAARRL 144 >gi|316932708|ref|YP_004107690.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris DX-1] gi|315600422|gb|ADU42957.1| CMP/dCMP deaminase zinc-binding protein [Rhodopseudomonas palustris DX-1] Length = 148 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81 + C+IV+DG+VI R +T HAE+ A+ +A E YVTLEPC+ Sbjct: 25 IGCVIVRDGVVIAKAGNRTLTDRDPTAHAELLAIRQASAKLGSERLVDCDLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I IRR+ DP G+++ Q Sbjct: 85 ------CAGAISFARIRRLYFGAFDPKGGAVESGVRFYGQ 118 >gi|313665291|ref|YP_004047162.1| cytidine and deoxycytidylate deaminase zinc-binding region [Mycoplasma leachii PG50] gi|312949249|gb|ADR23845.1| cytidine and deoxycytidylate deaminase zinc-binding region [Mycoplasma leachii PG50] Length = 160 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 Y HAE+ A+ + + YVTL PC+ CA+ II+ GI+R+ D Sbjct: 72 NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 124 >gi|298345726|ref|YP_003718413.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063] gi|298235787|gb|ADI66919.1| nucleoside deaminase [Mobiluncus curtisii ATCC 43063] Length = 180 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57 +SS + R + A ++ G P A ++ +GIV G G+ Y HAE+ Sbjct: 29 LSSAEVRALDTAYGLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL EA +G T TLEPC+ CA I+ I R++ DP Sbjct: 88 VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141 Query: 113 G 113 G Sbjct: 142 G 142 >gi|269986813|gb|EEZ93091.1| CMP/dCMP deaminase zinc-binding protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 159 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 9/51 (17%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE A+ +A G G+TAYVT+EPC CA+ +++ G++RVV Sbjct: 80 HAEQNAITQAAKFGVSLDGSTAYVTMEPCF------VCAKMLVQVGVKRVV 124 >gi|223944391|gb|ACN26279.1| unknown [Zea mays] Length = 154 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 35/134 (26%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++GI++G G + GC HAEV A L Sbjct: 20 ACLVSQEGIILGIGYNGFPRGCSDDKLPWAKKSASGDPLETKFPYVVHAEVNAILNTNHA 79 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD---DPDVRVSGRGLQWLSQK 122 A G YVT+ PC+ CA+ II+ G+ V+ V+ D V + LS Sbjct: 80 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVEKKIDNSAHVYVASHKLLSMA 133 Query: 123 GIIVDRMMESEGKI 136 G+ V + +I Sbjct: 134 GVKVRKHQPQMAQI 147 >gi|57866115|ref|YP_187800.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus epidermidis RP62A] gi|242241897|ref|ZP_04796342.1| deaminase [Staphylococcus epidermidis W23144] gi|251809981|ref|ZP_04824454.1| deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|282874984|ref|ZP_06283859.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus epidermidis SK135] gi|57636773|gb|AAW53561.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus epidermidis RP62A] gi|242234675|gb|EES36987.1| deaminase [Staphylococcus epidermidis W23144] gi|251806524|gb|EES59181.1| deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|281296312|gb|EFA88831.1| cytidine and deoxycytidylate deaminase zinc-binding region [Staphylococcus epidermidis SK135] Length = 168 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVK+ VI R T HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA II I +VV DP SG + L Q + I+ ++E E Sbjct: 86 ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRAIVEKGILEEECAE 139 Query: 137 FLHAYLTRQVEKRS 150 L ++ EK+ Sbjct: 140 LLRSFFKEIREKKK 153 >gi|330837260|ref|YP_004411901.1| dCMP deaminase [Spirochaeta coccoides DSM 17374] gi|329749163|gb|AEC02519.1| dCMP deaminase [Spirochaeta coccoides DSM 17374] Length = 161 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 36/126 (28%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAY-GGCP------- 53 S+D FM AL + S +PS AC++ + ++G G + GC Sbjct: 9 SWDEYFMGVAL-----LSAMRSKDPSTQVGACIVSPEKRIVGVGYNGFPSGCNDDDLPWE 63 Query: 54 --------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 HAE+ A+ + +G++ YV L PC+ CA+ II+ GI Sbjct: 64 REGAFLETKYPFVCHAELNAILNSSGNLKGSSLYVALFPCNE------CAKAIIQAGIVE 117 Query: 100 VVVCVD 105 +V D Sbjct: 118 IVYLSD 123 >gi|325292072|ref|YP_004277936.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3] gi|325059925|gb|ADY63616.1| cytidine and deoxycytidylate deaminase [Agrobacterium sp. H13-3] Length = 152 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 48/105 (45%), Gaps = 25/105 (23%) Query: 31 VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALE---EAGEEAR--GATAYVTL 76 + ++V DG VI R VTA HAE+ + EA E+ R GA YVTL Sbjct: 26 IGAVLVMDGRVIARSGNRTRELNDVTA-----HAEIAVIRMACEALEQERLPGADLYVTL 80 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EPC+ CA I IRR+ +DP G+++ SQ Sbjct: 81 EPCTM------CAAAISFARIRRLYYGAEDPKGGAVHSGVRFFSQ 119 >gi|283796628|ref|ZP_06345781.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1] gi|291076051|gb|EFE13415.1| putative deoxycytidylate deaminase [Clostridium sp. M62/1] gi|295092489|emb|CBK78596.1| Deoxycytidylate deaminase [Clostridium cf. saccharolyticum K10] gi|295115332|emb|CBL36179.1| Deoxycytidylate deaminase [butyrate-producing bacterium SM4/1] Length = 176 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 56/145 (38%), Gaps = 44/145 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 ++D FM A + S +PS AC++ D ++ G + GC Sbjct: 22 TWDEYFMGVAKL-----AAMRSKDPSTQVGACIVSSDNKILSMGYNGFPIGCSDDEFPWG 76 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 H+E+ A L G G+ YVTL PC+ CA+ II+ Sbjct: 77 KEHETDDPYNAKYLYTTHSELNAILNYRGGSLEGSKLYVTLFPCNE------CAKAIIQA 130 Query: 96 GIRRVVV----CVDDPDVRVSGRGL 116 GIR +V D P VR S R L Sbjct: 131 GIRTLVYDSDKYQDTPSVRASKRML 155 >gi|329897048|ref|ZP_08271820.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium IMCC3088] gi|328921488|gb|EGG28874.1| tRNA-specific adenosine-34 deaminase [gamma proteobacterium IMCC3088] Length = 159 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V C+IV+DG +I G +++ HAE+ AL AG A+ YVTLEPC Sbjct: 26 VGCVIVRDGSLIASGHNVVISSADPSAHAEIVALRHAGSRIGNYRLVDASLYVTLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 C ++ ++R++ +P Sbjct: 84 ----LMCVGAMVHARVQRLIFAATEP 105 >gi|326798488|ref|YP_004316307.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21] gi|326549252|gb|ADZ77637.1| CMP/dCMP deaminase zinc-binding protein [Sphingobacterium sp. 21] Length = 156 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 29/157 (18%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM ALR ++ + + +IV DG +I RG T HAE+QA Sbjct: 15 DEFFMKEALREAQ--KAFDADEVPIGAVIVHDGKIIARGHNLTETLNDVTAHAEMQAFTA 72 Query: 63 A-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G+ + T YVT+EPC CA I+R+V D RG Sbjct: 73 AANYIGGKYLKDCTLYVTIEPC------VMCAGASYWSQIKRIVFGARD-----EKRGYA 121 Query: 118 WLSQ-----KGIIVDRMMESEGKIFLHAYLTRQVEKR 149 +S+ K +V +ME + + + Q+++R Sbjct: 122 TISKDIVHPKTTVVSGIMEETCRELMQRFF--QLKRR 156 >gi|319399688|gb|EFV87937.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Staphylococcus epidermidis FRI909] Length = 168 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 41/134 (30%), Positives = 54/134 (40%), Gaps = 20/134 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + +IVK+ VI R T HAE A+E A E T YVTLEPC Sbjct: 26 IGAVIVKEDQVIARAHNLRETLQQPTAHAEHIAIERASEVVGSWRLEECTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 CA II I +VV DP SG + L Q + I+ ++E E Sbjct: 86 ------CAGTIIMSRIPKVVYGATDPKGGCSGSLMNLLEQPQFNHRAIVEKGILEEECAE 139 Query: 137 FLHAYLTRQVEKRS 150 L ++ EK+ Sbjct: 140 LLRSFFKEIREKKK 153 >gi|224013458|ref|XP_002296393.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968745|gb|EED87089.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 543 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 25/157 (15%) Query: 144 RQVEKRSHITLKIAVSQDNMIGM---------AGCGSVPITGFISKNQVHLLRAQSDAIL 194 R +R ITL A + D MI ++ ++ S H LR DAIL Sbjct: 128 RVARRRPFITLAYAQTLDGMIAAKTSNDKSKATTTSNMRLSSPQSTVLTHQLRNMHDAIL 187 Query: 195 VGIGTVLADDPELTCRL----NGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 VG T L D P L RL N + P+ ++LD H L+ +++ +L P + Sbjct: 188 VGGSTFLVDAPRLNVRLQPDTNKMDSMTQQPIPVVLDTH--LNALQQVLWGEVLPP--LA 243 Query: 249 TENDDP---VLALAFRKKNI---NIIYCDCRDLKKLL 279 ++DD VL + NI N + C D K+ Sbjct: 244 ADHDDEEELVLPQEMQVDNIRANNPVICCSSDAAKVF 280 >gi|224371400|ref|YP_002605564.1| Cdh2 [Desulfobacterium autotrophicum HRM2] gi|223694117|gb|ACN17400.1| Cdh2 [Desulfobacterium autotrophicum HRM2] Length = 626 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +A ++AG+ +G + L P H G ++ + C + VD D+ V+G + Sbjct: 491 EAADQAGDGLKGVCKALGLPPVLHMGSCVDISRILTVCAAVANALGVDISDLPVAGAAPE 550 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVPITG 176 W+S+K + + + S G IF QV +T + ++++G A + P+ G Sbjct: 551 WMSEKAVSIGAYVVSSG-IFTVLGTVPQVLGSPFVTEILTKIANDVVGAAFAVETDPVKG 609 Query: 177 FISKNQVHLLRAQSDA 192 HL+ A DA Sbjct: 610 ------AHLMIAHMDA 619 >gi|126652937|ref|ZP_01725079.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus sp. B14905] gi|126590267|gb|EAZ84389.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus sp. B14905] Length = 170 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 17/115 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M + D FM AL ++ + P + ++V DG +I R T HAE Sbjct: 1 MDIFETDRLFMKQALEEAK-KAAILGEVP-IGAVLVYDGEIIARAHNLRETTQNATTHAE 58 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 + ++EA ++ T YVTLEPC P CA I++ + RVV D Sbjct: 59 LMVIQEACQKIGSWRLEKTTLYVTLEPC------PMCAGAILQSRVPRVVYGARD 107 >gi|290978118|ref|XP_002671783.1| predicted protein [Naegleria gruberi] gi|284085355|gb|EFC39039.1| predicted protein [Naegleria gruberi] Length = 214 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 23/110 (20%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D +M AL ++ L V C+IV D ++GRG HAE++A +E Sbjct: 18 DEIYMREALNMAQ--KALEELEVPVGCVIVHDNKIVGRGYNKTNQKKNATRHAELEAFDE 75 Query: 63 AGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 E + T YVT+EPC CA +I I RVV Sbjct: 76 ITENYSEELNNNVNFFKECTLYVTVEPCV------MCASALILLKIGRVV 119 >gi|281354625|gb|EFB30209.1| hypothetical protein PANDA_001894 [Ailuropoda melanoleuca] Length = 182 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 82 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFISD 135 Query: 106 ---DPDVRVSGRGL 116 D D + R L Sbjct: 136 KYHDSDEMTAARRL 149 >gi|237733437|ref|ZP_04563918.1| tRNA-adenosine deaminase [Mollicutes bacterium D7] gi|229383472|gb|EEO33563.1| tRNA-adenosine deaminase [Coprobacillus sp. D7] Length = 152 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 15/80 (18%) Query: 31 VACLIVKDGIVI--GRGV--TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IVKDG +I GR + T+ HAE+ A+EEA T YVTLEPC Sbjct: 26 VGAVIVKDGKIIACGRNLRETSKRATAHAEIIAIEEACRTLNSWYLDECTLYVTLEPCVM 85 Query: 82 YGRSPPCAQFIIECGIRRVV 101 C+ II I+RVV Sbjct: 86 ------CSGAIINSRIQRVV 99 >gi|115440135|ref|NP_001044347.1| Os01g0765000 [Oryza sativa Japonica Group] gi|57899567|dbj|BAD87146.1| deoxycytidylate deaminase-like [Oryza sativa Japonica Group] gi|113533878|dbj|BAF06261.1| Os01g0765000 [Oryza sativa Japonica Group] gi|215678846|dbj|BAG95283.1| unnamed protein product [Oryza sativa Japonica Group] Length = 248 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 40/130 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM+ A ++ S +P+ ACL+ ++GI++G G + GC Sbjct: 75 SWDDYFMAIAFLSAK-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDNKLPWA 129 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAEV A L A G YVT+ PC+ CA+ II+ Sbjct: 130 KKSAKGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 183 Query: 96 GIRRVVVCVD 105 G+ V+ V+ Sbjct: 184 GVSEVIYFVE 193 >gi|78045157|ref|YP_361349.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans Z-2901] gi|77997272|gb|ABB16171.1| putative comE operon protein 2 [Carboxydothermus hydrogenoformans Z-2901] Length = 170 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE A+ +A G G+T Y+T +PCS CA+ +I G+ RVV D PD Sbjct: 99 HAEQNAIIQAAVYGVSTSGSTIYITHQPCS------LCAKMLINAGVERVVYKGDYPD 150 >gi|325678499|ref|ZP_08158114.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] gi|324109810|gb|EGC04011.1| cytidine and deoxycytidylate deaminase zinc-binding region [Ruminococcus albus 8] Length = 248 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A+ + + +G+ YV+L PC+ CA+ II+ GI+ V+ D Sbjct: 71 TKYPFVCHAELNAVLNSNHDLKGSRIYVSLFPCNE------CAKAIIQSGIKEVIYTCD 123 >gi|163816077|ref|ZP_02207447.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759] gi|158448887|gb|EDP25882.1| hypothetical protein COPEUT_02257 [Coprococcus eutactus ATCC 27759] Length = 159 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 43/160 (26%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 S+D FM A+ + S +PS AC++ K+ ++ G Y G P Sbjct: 8 SWDQYFMGIAMMSAE-----RSKDPSTQVGACIVDKNNRILSMG---YNGMPAGCDDDAM 59 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ + L G + A Y TL PC+ CA+ II+C Sbjct: 60 PWGKVGNPLDNKYFYVCHAELNSILNYRGGNLKDAIIYSTLFPCNE------CAKAIIQC 113 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 GI+ VV D S + + + R ES+GK Sbjct: 114 GIKEVVYMSDKYASTDSTIASKRMFDMAGVKYRQFESKGK 153 >gi|153207852|ref|ZP_01946429.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat Q177'] gi|154706920|ref|YP_001424041.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway 5J108-111] gi|161830554|ref|YP_001596549.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331] gi|165918843|ref|ZP_02218929.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334] gi|212212896|ref|YP_002303832.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212] gi|212219141|ref|YP_002305928.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154] gi|215919009|ref|NP_819652.2| zinc-binding domain-containing protein [Coxiella burnetii RSA 493] gi|120576278|gb|EAX32902.1| tRNA-specific adenosine deaminase [Coxiella burnetii 'MSU Goat Q177'] gi|154356206|gb|ABS77668.1| tRNA-specific adenosine deaminase [Coxiella burnetii Dugway 5J108-111] gi|161762421|gb|ABX78063.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 331] gi|165917475|gb|EDR36079.1| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 334] gi|206583894|gb|AAO90166.2| tRNA-specific adenosine deaminase [Coxiella burnetii RSA 493] gi|212011306|gb|ACJ18687.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuG_Q212] gi|212013403|gb|ACJ20783.1| tRNA-specific adenosine deaminase [Coxiella burnetii CbuK_Q154] Length = 148 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM AL ++ + + ++VK+ ++G G +T HAE+ AL Sbjct: 3 DELFMHEALALAK--KANENNEVPIGAVLVKENEIVGHGFNEPITLNDPTAHAEILALRN 60 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC+ C +I+ I+R+V DP Q Sbjct: 61 AAKRVGNYRLVDTTLYVTLEPCAM------CVGAMIQARIKRLVFGAFDPRAGAVESVFQ 114 Query: 118 WLSQ 121 L++ Sbjct: 115 LLNE 118 >gi|194335892|ref|YP_002017686.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme BU-1] gi|194308369|gb|ACF43069.1| CMP/dCMP deaminase zinc-binding [Pelodictyon phaeoclathratiforme BU-1] Length = 155 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 27/155 (17%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA-- 63 F A F R V P A ++ +G VIGRG HAE+ AL A Sbjct: 12 FREAIKAFERKEV------PVGAVVLDSNGHVIGRGYNQVEALCDSTAHAEMIALTSAMA 65 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RG 115 + T VTLEPC P CA I+ + RV+ DP + +G G Sbjct: 66 TLGSKYLNDCTLAVTLEPC------PMCAGAIVNAKVGRVIFGAYDPKMGAAGTVMNVTG 119 Query: 116 LQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 + L+ + + +ME++ + L + R++ K S Sbjct: 120 SRQLNHQPEVFGGIMENKCRNLLQDFF-RELRKGS 153 >gi|301510605|ref|ZP_07235842.1| putative deaminase [Acinetobacter baumannii AB058] Length = 167 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|329903280|ref|ZP_08273412.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327548444|gb|EGF33120.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 228 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Query: 274 DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL K++ +L G L+VEGG V+ SF+N+ LVD + + ++ G G P+ E Sbjct: 139 DLAKVVALLADELGTKRLIVEGGPHVSGSFVNAGLVDEVSVLVLPLIDGRGDHPASFE 196 >gi|169796135|ref|YP_001713928.1| putative deaminase [Acinetobacter baumannii AYE] gi|301597400|ref|ZP_07242408.1| putative deaminase [Acinetobacter baumannii AB059] gi|169149062|emb|CAM86939.1| putative deaminase [Acinetobacter baumannii AYE] Length = 167 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|15827698|ref|NP_301961.1| hypothetical protein ML1340 [Mycobacterium leprae TN] gi|221230175|ref|YP_002503591.1| hypothetical protein MLBr_01340 [Mycobacterium leprae Br4923] gi|2065234|emb|CAB08270.1| hypothetical protein MLC1351.23 [Mycobacterium leprae] gi|13093249|emb|CAC31721.1| possible reductase [Mycobacterium leprae] gi|219933282|emb|CAR71435.1| possible reductase [Mycobacterium leprae Br4923] Length = 268 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/155 (25%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 184 HLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++LR +D I+VG GTV ++ + R Q P I+ +L D Sbjct: 82 NMLRELADVIVVGAGTVRIENYSGAHLPVTKRQQRQARGQSEVPQLAIVTNSGRLDRDMA 141 Query: 236 IIKTALLAPVIIV-TENDDPVLALAFRKKNINIIY---CDCRDLKKL-----LTILVGRG 286 + +AP+++ TE A R + ++ Y C D K+ L L RG Sbjct: 142 VFTRTEIAPLVLTCTET-----AKKLRTRLADLAYVVSCSGDDPSKVDETVVLATLQTRG 196 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + +L EGG + SFI ++D + L + +++G Sbjct: 197 LRRVLTEGGPMLLGSFIQHGMLDELCLTIAPLIVG 231 >gi|152973870|ref|YP_001373387.1| CMP/dCMP deaminase zinc-binding [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022622|gb|ABS20392.1| CMP/dCMP deaminase zinc-binding [Bacillus cytotoxicus NVH 391-98] Length = 164 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 20/135 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + ++V DG VI T HAE+ A+++A + AT YVTLEPC Sbjct: 26 IGAVLVLDGKVISSAHNLRETEQRSIAHAELLAIDKACKALGTWRLEHATLYVTLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V +ME E Sbjct: 84 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVMEEECGA 139 Query: 137 FLHAYLTRQVEKRSH 151 L ++ KR Sbjct: 140 LLTSFFRELRRKRKE 154 >gi|229107707|ref|ZP_04237345.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15] gi|228675747|gb|EEL30953.1| hypothetical protein bcere0018_100 [Bacillus cereus Rock1-15] Length = 166 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGA 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|90422427|ref|YP_530797.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris BisB18] gi|90104441|gb|ABD86478.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisB18] Length = 148 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 17/123 (13%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEA 63 A FM AL+ + + + C+IV + VI R +T HAEV A+ +A Sbjct: 4 ASFMDLALKAA--ETAQNAGEVPIGCVIVLNNAVIASAGNRTLTDRDPTAHAEVLAIRQA 61 Query: 64 G-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E G YVTLEPC+ CA I IRR+ DP G+++ Sbjct: 62 AAALGSERLSGCDLYVTLEPCTM------CAGAISFARIRRLYYGAADPKGGAVESGVRF 115 Query: 119 LSQ 121 +Q Sbjct: 116 FAQ 118 >gi|194212324|ref|XP_001917931.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase) [Equus caballus] Length = 178 Score = 37.7 bits (86), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQTGIKEVIFMSD 130 Query: 106 ---DPDVRVSGRGL 116 D D + R L Sbjct: 131 KYHDSDEATAARLL 144 >gi|255540237|ref|XP_002511183.1| deoxycytidylate deaminase, putative [Ricinus communis] gi|223550298|gb|EEF51785.1| deoxycytidylate deaminase, putative [Ricinus communis] Length = 224 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++G+++G G + GC HAEV A L Sbjct: 88 ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSKTGNPLETKYPYVCHAEVNAILNTNHA 147 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ II+ G+ V+ V+ Sbjct: 148 SAAGQKLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 181 >gi|149742700|ref|XP_001492380.1| PREDICTED: dCMP deaminase [Equus caballus] Length = 178 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130 Query: 106 ---DPDVRVSGRGL 116 D D + R L Sbjct: 131 KYHDSDEATAARLL 144 >gi|220919906|ref|YP_002495209.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS 2060] gi|219952326|gb|ACL62717.1| CMP/dCMP deaminase zinc-binding [Methylobacterium nodulans ORS 2060] Length = 160 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 15/112 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +FM+ A+ S + S C+IV+DG ++ G V H E++A+ + Sbjct: 5 DKKFMARAIELSEKTSLVESAGGVFGCVIVQDGEILAEGANRVVAENDPTWHGEIEAIRK 64 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 A + + R AT Y + EPC P C GI+ + + D Sbjct: 65 ACKAQGSFKLRDATLYTSAEPC------PMCMAAAYWAGIKAIYYAATNEDA 110 >gi|282856349|ref|ZP_06265628.1| cytidine and deoxycytidylate deaminase family protein [Pyramidobacter piscolens W5455] gi|282585720|gb|EFB91009.1| cytidine and deoxycytidylate deaminase family protein [Pyramidobacter piscolens W5455] Length = 166 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 45/106 (42%), Gaps = 18/106 (16%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAEV AL EA G + YVTLEPC P CA +++ + R+V DP Sbjct: 55 HAEVVALREAARNLGVWNLNGCSLYVTLEPC------PMCAGALVQARVSRLVYGCTDPK 108 Query: 109 VRVSGRGLQWLSQKGIIVDRM------MESEGKIFLHAYLTRQVEK 148 G L L++ + R+ ME E + L + EK Sbjct: 109 AGACGT-LYDLTRDTRLFHRLQVVPGVMEQECRALLQDFFRECREK 153 >gi|157736310|ref|YP_001488993.1| dCMP deaminase, putative [Arcobacter butzleri RM4018] gi|315635442|ref|ZP_07890708.1| CMP/dCMP deaminase [Arcobacter butzleri JV22] gi|157698164|gb|ABV66324.1| dCMP deaminase, putative [Arcobacter butzleri RM4018] gi|315480200|gb|EFU70867.1| CMP/dCMP deaminase [Arcobacter butzleri JV22] Length = 147 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 39/101 (38%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63 V +IVKDG ++ G Y G P HAE+ A+ A Sbjct: 25 VGAVIVKDGRILSTG---YNGTPAGYINCSEHWKGEYTKDHHEWSKTYEIHAEMNAIIWA 81 Query: 64 GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + G T YVTLEPCS C++ +I GI+R+V Sbjct: 82 ARKGISIEGGTIYVTLEPCS------ECSKNLIASGIKRIV 116 >gi|228956462|ref|ZP_04118260.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803219|gb|EEM50039.1| hypothetical protein bthur0005_100 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 166 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG +I T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEIISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ + +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDERFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|332980851|ref|YP_004462292.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1 BON] gi|332698529|gb|AEE95470.1| CMP/dCMP deaminase zinc-binding protein [Mahella australiensis 50-1 BON] Length = 170 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 13/78 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G + AT Y+T +PC+ CA+ II GI R+V D PD Sbjct: 77 HAEQNAIAQAAMMGISVKDATIYITTQPCA------ICAKMIINAGITRIVYKGDYPD-- 128 Query: 111 VSGRGLQWLSQKGIIVDR 128 + L + GI V R Sbjct: 129 --ALAMDLLREAGIEVAR 144 >gi|91779380|ref|YP_554588.1| putative pyrimidine reductase [Burkholderia xenovorans LB400] gi|91692040|gb|ABE35238.1| putative pyrimidine reductase [Burkholderia xenovorans LB400] Length = 225 Score = 37.7 bits (86), Expect = 2.6, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274 I +DP +++ S TAL + VI ++TE DD + L ++I + Y D Sbjct: 84 ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTGID 136 Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 L K++ L GV L+VEGG+ V+ +F+N+ LVD + + +V G PS E Sbjct: 137 LDKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193 >gi|309775004|ref|ZP_07670019.1| cytidine/deoxycytidylate deaminase family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917222|gb|EFP62947.1| cytidine/deoxycytidylate deaminase family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 162 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + C+IVKD +I RG + HAE+ A+++A ++ YVTLEPC Sbjct: 35 IGCVIVKDDKIIARGHNLRESKQQSINHAEIIAIQKACKKIGSWRLEDCDLYVTLEPCCM 94 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 CA I++ IR V+ DP Sbjct: 95 ------CAGAILQSRIRTVIYGASDP 114 >gi|260806557|ref|XP_002598150.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae] gi|229283422|gb|EEN54162.1| hypothetical protein BRAFLDRAFT_82934 [Branchiostoma floridae] Length = 200 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L + + +G T YV L PC+ CA+ +I+ GIR +V D Sbjct: 94 TKYPYVCHAELNAILNKNSADVKGCTMYVALFPCNE------CAKLVIQSGIREIVFMSD 147 >gi|187919113|ref|YP_001888144.1| bifunctional deaminase-reductase domain-containing protein [Burkholderia phytofirmans PsJN] gi|187717551|gb|ACD18774.1| bifunctional deaminase-reductase domain protein [Burkholderia phytofirmans PsJN] Length = 225 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 15/117 (12%) Query: 222 IILDPHFKLSLDSKIIKTALLAPVI-IVTEN--DDPVLALAFRKKNINIIYC----DCRD 274 I +DP +++ S TAL + VI ++TE DD + L ++I + Y D Sbjct: 84 ISIDPQGRVAWKSN---TALKSHVIEVLTEQVADDYLAYL----QSIGVSYVFGGKTELD 136 Query: 275 LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 L K++ L GV L+VEGG+ V+ +F+N+ LVD + + +V G PS E Sbjct: 137 LGKVVQTLARELGVKKLIVEGGSHVSGAFVNAGLVDEVSVLILPLVDGRSEHPSSFE 193 >gi|91202838|emb|CAJ72477.1| similar to dCMP deaminase [Candidatus Kuenenia stuttgartiensis] Length = 158 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ AL +A G + GAT Y T PCS CA+ ++ GI+R+V D PD Sbjct: 79 HAEMNALIQAARYGIKISGATLYSTTCPCSL------CAKMLVNAGIKRIVAISDYPD 130 >gi|218234516|ref|YP_002364872.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus B4264] gi|218162473|gb|ACK62465.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus cereus B4264] Length = 166 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 20/136 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +IV DG VI T HAE+ A+++A ++ AT YVTLEPC Sbjct: 28 IGAVIVLDGEVISVAHNLRETEQRSIAHAELLAIDDACKKLGTWRLEDATLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESEGKI 136 P CA I+ ++RVV DP +G + L+ +V ++E E Sbjct: 86 ----PMCAGGIVLSRVKRVVYGASDPKGGCAGTLMNLLTDDRFNHQCEVVSGVLEEECGT 141 Query: 137 FLHAYLTRQVEKRSHI 152 L + +KR I Sbjct: 142 LLTNFFRELRKKRKAI 157 >gi|62955247|ref|NP_001017639.1| deoxycytidylate deaminase [Danio rerio] gi|62202187|gb|AAH92809.1| DCMP deaminase [Danio rerio] Length = 201 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 14/97 (14%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G + YV L PC+ CA+ II+ GI+ V+ D Sbjct: 92 TKYPYVCHAELNAIMNKNSADVKGCSIYVALFPCNE------CAKLIIQAGIKDVIYLSD 145 Query: 106 D----PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138 P++ S R L+ G+ + +G+I + Sbjct: 146 KYHDTPEMTASRR---LLNLAGVTYKQFKPKQGRIVI 179 >gi|46370356|gb|AAS89964.1| deaminase [Agrobacterium vitis] Length = 149 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 42/133 (31%), Positives = 58/133 (43%), Gaps = 31/133 (23%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHA 55 + RFM AL +R G P + ++VKDG+++ + VTA HA Sbjct: 2 TLTTRFMDVALEEARL-AGARGEVP-IGAVLVKDGVILAQAGNETRALQDVTA-----HA 54 Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 E+ A+ A E GA YVTLEPC+ CA I IRR+ PD + Sbjct: 55 EILAIRRACTILEDERLAGADLYVTLEPCTM------CAAAISFARIRRLYYGA--PDEK 106 Query: 111 VSG--RGLQWLSQ 121 G G ++ SQ Sbjct: 107 GGGVDHGARFYSQ 119 >gi|92118638|ref|YP_578367.1| CMP/dCMP deaminase, zinc-binding [Nitrobacter hamburgensis X14] gi|91801532|gb|ABE63907.1| tRNA-adenosine deaminase [Nitrobacter hamburgensis X14] Length = 148 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 51/126 (40%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81 + C+IV+DG VI R +T HAEV AL A E YVTLEPC+ Sbjct: 25 IGCVIVRDGEVIAAAGNRTLTDRDPTAHAEVLALRAAAHAIGSERLTDCDLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-----QKGIIVDRMMESEGKI 136 CA I IRR+ DP G+++ + + + + ESE Sbjct: 85 ------CAGAISFARIRRLYYGAPDPKGGAVDSGVRFFAAPTCHHRPEVYPAVGESEAAT 138 Query: 137 FLHAYL 142 L + Sbjct: 139 LLRDFF 144 >gi|83319549|ref|YP_424377.1| deoxycytidylate deaminase [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283435|gb|ABC01367.1| probable deoxycytidylate deaminase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 153 Score = 37.7 bits (86), Expect = 2.7, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Query: 49 YGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 Y HAE+ A+ + + YVTL PC+ CA+ II+ GI+R+ D Sbjct: 67 YAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 117 >gi|332851789|ref|ZP_08433714.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6013150] gi|332865831|ref|ZP_08436615.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6013113] gi|332729796|gb|EGJ61131.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6013150] gi|332735043|gb|EGJ66128.1| cytidine and deoxycytidylate deaminase zinc-binding region [Acinetobacter baumannii 6013113] Length = 170 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|260555185|ref|ZP_05827406.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606] gi|260411727|gb|EEX05024.1| cytosine/adenosine deaminase [Acinetobacter baumannii ATCC 19606] Length = 167 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|326203924|ref|ZP_08193786.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM 2782] gi|325986022|gb|EGD46856.1| CMP/dCMP deaminase zinc-binding [Clostridium papyrosolvens DSM 2782] Length = 151 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 + +FM A++ ++ V ++VKDG +I G HAE++AL++ Sbjct: 5 NEQFMQEAIKQAK--EAYAKGESPVGAIVVKDGELIASGCNQKEEKQDVTSHAEIEALKK 62 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A ++ G YVTLEPC+ CA II+ I+ + + D +G Sbjct: 63 AAKKLGTWRLDGCDMYVTLEPCAM------CAGAIIQSRIKTLYIGAMDKKAGAAG 112 >gi|162135105|ref|YP_001595846.1| hypothetical protein [Pseudomonas phage YuA] gi|161513952|emb|CAO77778.1| hypothetical protein [Pseudomonas phage YuA] Length = 153 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 10/78 (12%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 HAEV AL G A G T Y + PC P C + E G++RV V D +G Sbjct: 72 HAEVNALNFLGSPATGFTLYTSF-PC-----CPNCMEAAGEAGVKRVAFPVID----YAG 121 Query: 114 RGLQWLSQKGIIVDRMME 131 R W+++ +D +E Sbjct: 122 RDPGWVAEWNQRIDEALE 139 >gi|257056391|ref|YP_003134223.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora viridis DSM 43017] gi|256586263|gb|ACU97396.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora viridis DSM 43017] Length = 258 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 18/167 (10%) Query: 180 KNQVHLLRAQSDAILVGIGTVLAD---------DPELTCRLNGLQEHSPMRIILDPHFKL 230 K L R +D ILVG GT A+ R GL E P+ ++ L Sbjct: 65 KRVFGLGRDLADVILVGAGTARAERYRGVKAHELRLERRRRLGLSELPPIAVVTG-RCDL 123 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVT 288 + D ++ ++ P+++ T+ A + ++++ + D + L L RG+ Sbjct: 124 TPDDPLVTDTIVPPLVLTTQRAPRHRKDALTEAGVDVVEAGEETVDPRLALAALDERGLR 183 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG------GIPSPL 329 + EGG + + + + LVD + L + ++ G G G+PSPL Sbjct: 184 RVDCEGGPRLFAALVAADLVDQLCLTIAPLLAGAGADRIVTGVPSPL 230 >gi|89100955|ref|ZP_01173801.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus sp. NRRL B-14911] gi|89084326|gb|EAR63481.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Bacillus sp. NRRL B-14911] Length = 180 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 17/131 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M ++ D +M A+ ++ G P + ++V DG +I R + HAE Sbjct: 6 MNITYNDDDYMKEAIEEAK-KAGELGEVP-IGAVVVLDGKIISRAHNLRESNQNAVAHAE 63 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+EEA A YVTLEPC+ C+ II I+RVV DP Sbjct: 64 LLAIEEACGMLGTWRLEDAALYVTLEPCAM------CSGAIILSRIKRVVYGAADPKGGC 117 Query: 112 SGRGLQWLSQK 122 +G + L + Sbjct: 118 AGTFMNLLQDE 128 >gi|326522122|dbj|BAK04189.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 233 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 45/158 (28%), Positives = 66/158 (41%), Gaps = 47/158 (29%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM+ A + S +P+ ACL+ ++GI++G G + GC Sbjct: 72 SWDDYFMAIAFLSAE-----RSKDPNRQVGACLVSQEGIILGIGYNGFPRGCSDDKLPWA 126 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAEV A L A G YVT+ PC+ CA+ II+ Sbjct: 127 KKSARGDPLETKYPYVVHAEVNAILNTNHASAAGQKLYVTMFPCNE------CAKIIIQS 180 Query: 96 GIRRVVVCV----DDPD-VRVSGRGLQWLSQKGIIVDR 128 G+ V+ V D+ D V V+ L LS G+ V + Sbjct: 181 GVSEVIYFVEKRIDNSDHVYVASHNL--LSMAGVKVRK 216 >gi|169633380|ref|YP_001707116.1| putative deaminase [Acinetobacter baumannii SDF] gi|169152172|emb|CAP01075.1| putative deaminase [Acinetobacter baumannii] Length = 166 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 28 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 87 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 88 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 119 >gi|15842209|ref|NP_337246.1| hypothetical protein MT2745 [Mycobacterium tuberculosis CDC1551] gi|13882497|gb|AAK47060.1| riboflavin-specific deaminase-related protein [Mycobacterium tuberculosis CDC1551] Length = 239 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 22/172 (12%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQE 216 G +G + P F+ +LLR +D I+VG+GTV + + R Q Sbjct: 38 GTSGAMAGPGDRFV----FNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQS 93 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD 274 P I+ +L D + +AP+++ T DD LA + +I C D Sbjct: 94 EVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAE---VIACSGDD 150 Query: 275 LKK-----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L++ L RG+ +L EGG + +F+ ++D + L + V+G Sbjct: 151 PGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVG 202 >gi|331703568|ref|YP_004400255.1| deoxycytidylate deaminase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328802123|emb|CBW54277.1| Deoxycytidylate deaminase (dCMP deaminase) [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 146 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%) Query: 47 TAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 Y HAE+ A+ + + YVTL PC+ CA+ II+ GI+R+ D Sbjct: 58 NKYAYVAHAELNAIVSSRSDLSNCDLYVTLFPCNE------CAKIIIQAGIKRIYYAND 110 >gi|238793763|ref|ZP_04637384.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909] gi|238726827|gb|EEQ18360.1| tRNA-specific adenosine deaminase [Yersinia intermedia ATCC 29909] Length = 181 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 55/135 (40%), Gaps = 23/135 (17%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPS---VACLIVKDGIVIGRG----VTAYGGCPH 54 P D +M AL + L + N V ++V VIG G + H Sbjct: 14 PAEYSDEYWMQRALTLA-----LRAQNEGEVPVGAVLVLGNQVIGEGWNKSIRDNDPTAH 68 Query: 55 AEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ AL + G+ + AT YVTLEPC CA +I IRR+V +D Sbjct: 69 AEIMALRQGGQVVQNYRLLEATLYVTLEPCVM------CAGAMIHSRIRRLVYGANDLKT 122 Query: 110 RVSGRGLQWLSQKGI 124 +G + L G+ Sbjct: 123 GAAGSLVDILHHPGM 137 >gi|38640200|ref|NP_944156.1| Cd dCMP deaminase [Aeromonas phage Aeh1] gi|33414885|gb|AAQ17928.1| Cd dCMP deaminase [Aeromonas phage Aeh1] Length = 182 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 17/79 (21%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE+ A+ G+ GAT Y T+ PC P CA+ I + I+ +V C D Sbjct: 91 HAEMNAILFAAHGGKSIEGATMYCTMAPC------PECAKTIAQAKIKTLVYCED----- 139 Query: 111 VSGRGLQW---LSQKGIIV 126 +G W L++ GI V Sbjct: 140 YNGSNADWAETLTRSGIKV 158 >gi|327400004|ref|YP_004340843.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus SNP6] gi|327315512|gb|AEA46128.1| CMP/dCMP deaminase zinc-binding protein [Archaeoglobus veneficus SNP6] Length = 159 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 13/79 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G G T Y T +PC CA+ II GI++VV D Sbjct: 81 HAEQNAIIQAAVHGVSIVGGTLYTTHQPCIM------CAKMIINAGIKKVVYGRRYAD-- 132 Query: 111 VSGRGLQWLSQKGIIVDRM 129 GRGL++L + GI V M Sbjct: 133 --GRGLEFLKEAGIEVVYM 149 >gi|110833682|ref|YP_692541.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax borkumensis SK2] gi|110646793|emb|CAL16269.1| cytidine/deoxycytidylate deaminase family protein [Alcanivorax borkumensis SK2] Length = 152 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 17/120 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AL +R V L+V+ G ++G+G +TA HAE+ A+ Sbjct: 3 DQDWMQQALMLARQAADQGEV--PVGALVVRGGQLLGQGYNQPITANDPSAHAEIIAMRS 60 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + G T YVTLEPC+ C ++ I R+V +P V LQ Sbjct: 61 ASLAEKNYRLSGCTLYVTLEPCTM------CFGAMVHARIGRLVYGASEPRAGVCESQLQ 114 >gi|73979520|ref|XP_849027.1| PREDICTED: similar to Deoxycytidylate deaminase (dCMP deaminase) isoform 1 [Canis familiaris] Length = 178 Score = 37.7 bits (86), Expect = 2.9, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130 Query: 106 ---DPDVRVSGRGL 116 D D + R L Sbjct: 131 KYHDSDEMTAARLL 144 >gi|167755137|ref|ZP_02427264.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402] gi|167705187|gb|EDS19766.1| hypothetical protein CLORAM_00641 [Clostridium ramosum DSM 1402] Length = 177 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 40/80 (50%), Gaps = 15/80 (18%) Query: 31 VACLIVKDGIVI--GRGV--TAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V +IVKDG +I GR + T+ HAE+ A+EEA T YVTLEPC Sbjct: 51 VGAVIVKDGKIIACGRNLRETSKRATAHAEIIAIEEACRTLNSWYLDECTLYVTLEPCVM 110 Query: 82 YGRSPPCAQFIIECGIRRVV 101 C+ II I+RVV Sbjct: 111 ------CSGAIINSRIQRVV 124 >gi|34495582|ref|NP_899797.1| cytidine deaminase [Chromobacterium violaceum ATCC 12472] gi|34101437|gb|AAQ57806.1| probable Cytidine deaminase [Chromobacterium violaceum ATCC 12472] Length = 499 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 44 RGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 + +T YG HAE+ A+ G G T Y T PC + CA+ +I GI+RV Sbjct: 335 KDITEYGRVVHAEMDAILNCARNGTPTLGTTLYCTTFPCHN------CAKHLIASGIKRV 388 Query: 101 V 101 V Sbjct: 389 V 389 >gi|218674406|ref|ZP_03524075.1| CMP/dCMP deaminase zinc-binding protein [Rhizobium etli GR56] Length = 157 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQA 59 RFM AL +R G P + ++V D I + R VTA HAE+ A Sbjct: 11 RFMEMALEEARA-AGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTA-----HAEIAA 63 Query: 60 L----EEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + E G+E GA YVTLEPC+ CA I IRR+ +DP Sbjct: 64 IRLACEALGQERLAGADLYVTLEPCTM------CAAAISFARIRRLYYGAEDPKGGAVDN 117 Query: 115 GLQWLSQ 121 G+++ +Q Sbjct: 118 GVRFYAQ 124 >gi|332376376|gb|AEE63328.1| unknown [Dendroctonus ponderosae] Length = 222 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 46/130 (35%) Query: 32 ACLIVKDGIVIGRGVTAYGGCP--------------------------HAEVQA-LEEAG 64 AC++ +D +++G G Y G P HAE+ A L + Sbjct: 44 ACIVNEDNVIVGIG---YNGMPKNCSDDEFPWSKGSKSDLDNKYLYVCHAELNAILNKNS 100 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + R T YV L PC+ CA+ II+ G+++++ D G++ Q I Sbjct: 101 VDVRNCTMYVGLFPCNE------CAKVIIQSGVKQIIYMSD-------KHGMK---QSTI 144 Query: 125 IVDRMMESEG 134 RM+++ G Sbjct: 145 ASKRMLDAAG 154 >gi|315652209|ref|ZP_07905204.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986] gi|315485515|gb|EFU75902.1| deoxycytidylate deaminase [Eubacterium saburreum DSM 3986] Length = 164 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%) Query: 54 HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV----CVDDPD 108 H+E+ A L G G+ YVTL PC+ CA+ II+ GI+ ++ D P Sbjct: 82 HSELNAILNYRGGSLEGSKIYVTLFPCNE------CAKAIIQAGIKTIIYEDDKYADSPS 135 Query: 109 VRVSGRGLQ 117 VR S R L Sbjct: 136 VRASKRMLN 144 >gi|320106996|ref|YP_004182586.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis SP1PR4] gi|319925517|gb|ADV82592.1| CMP/dCMP deaminase zinc-binding protein [Terriglobus saanensis SP1PR4] Length = 171 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 20/148 (13%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPC 79 P A ++ G ++ RG + + HAE+ AL AG E R G + YVTLEPC Sbjct: 27 PVGAIVVSPTGEILSRGQNRVIRDHDPSGHAEMVALRAAGVALENYRLTGCSLYVTLEPC 86 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-----WLSQKGIIVDRMMESEG 134 + CA I+ I R+V DP G L+ L+ + +V ++ E Sbjct: 87 AM------CAGAILHARIARLVYAAPDPKAGACGSALEVMNHPRLNHRCEVVAGVLADEC 140 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L + + S + + + S+ N Sbjct: 141 STLLQTFFRSRRAGPSTLLEESSASETN 168 >gi|29840517|ref|NP_829623.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila caviae GPIC] gi|29834866|gb|AAP05501.1| cytidine/deoxycytidylate deaminase family protein [Chlamydophila caviae GPIC] Length = 157 Score = 37.7 bits (86), Expect = 3.0, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 53/123 (43%), Gaps = 20/123 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEE 62 D FM+ AL+ +R V C+IVKD +I RG T P HAE+ + Sbjct: 6 DIFFMNQALKEAR--QAYDQDEVPVGCVIVKDNKIIARGHNTTEKFQDPTAHAEILCIGA 63 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + Y TLEPC CA I IRR+V PD+R+ G G Sbjct: 64 AAQYLENWRLVDTVLYCTLEPCLM------CAGAIQLARIRRIVWAA--PDLRL-GAGGS 114 Query: 118 WLS 120 W++ Sbjct: 115 WIN 117 >gi|300172852|ref|YP_003772017.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811] gi|299887230|emb|CBL91198.1| ComE operon protein 2 [Leuconostoc gasicomitatum LMG 18811] Length = 160 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 39/167 (23%) Query: 5 SFDARFMSAALRFS------RWHVGL----------TSTNPSVA----CLIVKDGIVIGR 44 S+D F++ A S R HVG + N SV+ C V D IV G Sbjct: 7 SWDQYFIAQAAILSTRSTCTRLHVGAVIVQNNRIISSGYNGSVSGTPHCTDVGDLIVDGH 66 Query: 45 GVTAYGGCPHAEVQALEEAGE---EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + A HAE AL +A + GA YVT PC H C + +++ GI+++ Sbjct: 67 CIRAV----HAEQNALMQAAQMGISVDGAEVYVTDVPCVH------CTKLLLQAGIQKIN 116 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE---GKIFLHAYLTRQ 145 D + L+QK +I+ ++ SE +I LH +++ + Sbjct: 117 FM---RDYHNDSFAEELLAQKHVILKQVPFSEQTASQIDLHQFISYE 160 >gi|18309013|ref|NP_560947.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens str. 13] gi|18143688|dbj|BAB79737.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 143 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVKDG +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|222153804|ref|YP_002562981.1| deaminase [Streptococcus uberis 0140J] gi|222114617|emb|CAR43628.1| putative deaminase [Streptococcus uberis 0140J] Length = 167 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVK+G +IGRG A HAE+ A+ EA Sbjct: 11 FMREALKEAK--KSLDKGEIPIGCVIVKEGRIIGRGHNAREERNQAIMHAEIMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 TVGNWRLLDTTLFVTIEPC 87 >gi|149182698|ref|ZP_01861165.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus sp. SG-1] gi|148849608|gb|EDL63791.1| probable cytidine/deoxycytidylate deaminase family protein [Bacillus sp. SG-1] Length = 173 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 21/126 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V DG VI T HAE+ A+EEA ++ A YVTLEPC Sbjct: 27 IGAVVVLDGEVIASAHNLRETTQNAVTHAELLAIEEACKKLGTWRLENAELYVTLEPC-- 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS------QKGIIVDRMMESEGK 135 P C+ II I+ VV DP +G + L Q ++ + E G+ Sbjct: 85 ----PMCSGAIILSRIKTVVYGAPDPKAGCAGTLMNLLEDDRFNHQCEVVPGVLQEECGQ 140 Query: 136 IFLHAY 141 + H + Sbjct: 141 LLTHFF 146 >gi|315654318|ref|ZP_07907226.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333] gi|315491353|gb|EFU80970.1| cytidine/deoxycytidylate deaminase [Mobiluncus curtisii ATCC 51333] Length = 180 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-----AYGGCPHAEV 57 +SS + R + A ++ G P A ++ +GIV G G+ Y HAE+ Sbjct: 29 LSSAEVRALETAYGLAQ-KAGRAGDIPVGAVVLTPEGIVAGLGLNQRENPPYDPSAHAEI 87 Query: 58 QALEEAG-----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL EA +G T TLEPC+ CA I+ I R++ DP Sbjct: 88 VALREAAGRLERWNLKGCTLVATLEPCTM------CAGAIVNARISRLIFGAWDPKAGAC 141 Query: 113 G 113 G Sbjct: 142 G 142 >gi|168210507|ref|ZP_02636132.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] gi|170711409|gb|EDT23591.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens B str. ATCC 3626] Length = 143 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVKDG +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLNGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|83647619|ref|YP_436054.1| cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396] gi|83635662|gb|ABC31629.1| Cytosine/adenosine deaminases [Hahella chejuensis KCTC 2396] Length = 156 Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust. Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 9/58 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79 V ++V+DG V+G G + ++ HAE+ A+ +A A G+T YVTLEPC Sbjct: 19 VGAILVRDGQVLGEGWNQPIRSHDPTAHAEISAIRKASAVAGNYRLPGSTLYVTLEPC 76 >gi|110798954|ref|YP_694504.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] gi|169343373|ref|ZP_02864377.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] gi|182625368|ref|ZP_02953141.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str. JGS1721] gi|110673601|gb|ABG82588.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens ATCC 13124] gi|169298459|gb|EDS80545.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens C str. JGS1495] gi|177909365|gb|EDT71817.1| tRNA-specific adenosine deaminase [Clostridium perfringens D str. JGS1721] Length = 143 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVKDG +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKDGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|15609808|ref|NP_217187.1| hypothetical protein Rv2671 [Mycobacterium tuberculosis H37Rv] gi|31793843|ref|NP_856336.1| hypothetical protein Mb2690 [Mycobacterium bovis AF2122/97] gi|121638546|ref|YP_978770.1| hypothetical protein BCG_2684 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662512|ref|YP_001284035.1| hypothetical protein MRA_2699 [Mycobacterium tuberculosis H37Ra] gi|148823860|ref|YP_001288615.1| hypothetical protein TBFG_12686 [Mycobacterium tuberculosis F11] gi|167970105|ref|ZP_02552382.1| hypothetical protein MtubH3_19568 [Mycobacterium tuberculosis H37Ra] gi|215404634|ref|ZP_03416815.1| hypothetical protein Mtub0_13300 [Mycobacterium tuberculosis 02_1987] gi|215412467|ref|ZP_03421209.1| hypothetical protein Mtub9_14005 [Mycobacterium tuberculosis 94_M4241A] gi|215428096|ref|ZP_03426015.1| hypothetical protein MtubT9_17568 [Mycobacterium tuberculosis T92] gi|215431611|ref|ZP_03429530.1| hypothetical protein MtubE_13253 [Mycobacterium tuberculosis EAS054] gi|215446927|ref|ZP_03433679.1| hypothetical protein MtubT_13677 [Mycobacterium tuberculosis T85] gi|218754408|ref|ZP_03533204.1| hypothetical protein MtubG1_13689 [Mycobacterium tuberculosis GM 1503] gi|219558677|ref|ZP_03537753.1| hypothetical protein MtubT1_15772 [Mycobacterium tuberculosis T17] gi|224991038|ref|YP_002645727.1| hypothetical protein JTY_2678 [Mycobacterium bovis BCG str. Tokyo 172] gi|253798247|ref|YP_003031248.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis KZN 1435] gi|254232778|ref|ZP_04926105.1| bifunctional enzyme riboflavin biosynthesis protein ribD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis C] gi|254365333|ref|ZP_04981378.1| bifunctional enzyme riboflavin biosynthesis protein ribD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|254551722|ref|ZP_05142169.1| hypothetical protein Mtube_14899 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260187688|ref|ZP_05765162.1| hypothetical protein MtubCP_16894 [Mycobacterium tuberculosis CPHL_A] gi|260201799|ref|ZP_05769290.1| hypothetical protein MtubT4_17295 [Mycobacterium tuberculosis T46] gi|260205981|ref|ZP_05773472.1| hypothetical protein MtubK8_16955 [Mycobacterium tuberculosis K85] gi|289444212|ref|ZP_06433956.1| riboflavin biosynthesis protein RibD domain-containing protein [Mycobacterium tuberculosis T46] gi|289448325|ref|ZP_06438069.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis CPHL_A] gi|289553544|ref|ZP_06442754.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis KZN 605] gi|289570844|ref|ZP_06451071.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis T17] gi|289575368|ref|ZP_06455595.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis K85] gi|289746470|ref|ZP_06505848.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis 02_1987] gi|289751321|ref|ZP_06510699.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis T92] gi|289754772|ref|ZP_06514150.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289758798|ref|ZP_06518176.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289762841|ref|ZP_06522219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis GM 1503] gi|294994236|ref|ZP_06799927.1| hypothetical protein Mtub2_06908 [Mycobacterium tuberculosis 210] gi|297635279|ref|ZP_06953059.1| hypothetical protein MtubK4_14205 [Mycobacterium tuberculosis KZN 4207] gi|297732275|ref|ZP_06961393.1| hypothetical protein MtubKR_14354 [Mycobacterium tuberculosis KZN R506] gi|298526140|ref|ZP_07013549.1| RibD [Mycobacterium tuberculosis 94_M4241A] gi|306776951|ref|ZP_07415288.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu001] gi|306780853|ref|ZP_07419190.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu002] gi|306785476|ref|ZP_07423798.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu003] gi|306790074|ref|ZP_07428396.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu004] gi|306794157|ref|ZP_07432459.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu005] gi|306798576|ref|ZP_07436878.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu006] gi|306804435|ref|ZP_07441103.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu008] gi|306807527|ref|ZP_07444195.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu007] gi|306968729|ref|ZP_07481390.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu009] gi|306973064|ref|ZP_07485725.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu010] gi|307080772|ref|ZP_07489942.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu011] gi|307085364|ref|ZP_07494477.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu012] gi|313659608|ref|ZP_07816488.1| hypothetical protein MtubKV_14359 [Mycobacterium tuberculosis KZN V2475] gi|1550712|emb|CAB02325.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD: DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE (RIBOFLAVIN-SPECIFIC DEAMINASE) + 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP REDUCTASE) [Mycobacterium tuberculosis H37Rv] gi|31619437|emb|CAD94875.1| POSSIBLE BIFUNCTIONAL ENZYME RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBD: DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE (RIBOFLAVIN-SPECIFIC DEAMINASE) + 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE (HTP REDUCTASE) [Mycobacterium bovis AF2122/97] gi|121494194|emb|CAL72672.1| Possible bifunctional enzyme riboflavin biosynthesis protein ribD: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124601837|gb|EAY60847.1| bifunctional enzyme riboflavin biosynthesis protein ribD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis C] gi|134150846|gb|EBA42891.1| bifunctional enzyme riboflavin biosynthesis protein ribD : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|148506664|gb|ABQ74473.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis H37Ra] gi|148722387|gb|ABR07012.1| bifunctional enzyme riboflavin biosynthesis protein ribD: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis F11] gi|224774153|dbj|BAH26959.1| putative hypothetical protein [Mycobacterium bovis BCG str. Tokyo 172] gi|253319751|gb|ACT24354.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis KZN 1435] gi|289417131|gb|EFD14371.1| riboflavin biosynthesis protein RibD domain-containing protein [Mycobacterium tuberculosis T46] gi|289421283|gb|EFD18484.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis CPHL_A] gi|289438176|gb|EFD20669.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis KZN 605] gi|289539799|gb|EFD44377.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis K85] gi|289544598|gb|EFD48246.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis T17] gi|289686998|gb|EFD54486.1| bifunctional enzyme riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis 02_1987] gi|289691908|gb|EFD59337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis T92] gi|289695359|gb|EFD62788.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289710347|gb|EFD74363.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mycobacterium tuberculosis GM 1503] gi|289714362|gb|EFD78374.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298495934|gb|EFI31228.1| RibD [Mycobacterium tuberculosis 94_M4241A] gi|308214608|gb|EFO74007.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu001] gi|308326253|gb|EFP15104.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu002] gi|308329858|gb|EFP18709.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu003] gi|308333424|gb|EFP22275.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu004] gi|308337491|gb|EFP26342.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu005] gi|308341164|gb|EFP30015.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu006] gi|308346123|gb|EFP34974.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu007] gi|308348919|gb|EFP37770.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu008] gi|308353691|gb|EFP42542.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu009] gi|308357538|gb|EFP46389.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu010] gi|308361486|gb|EFP50337.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu011] gi|308365093|gb|EFP53944.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis SUMu012] gi|323718731|gb|EGB27892.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis CDC1551A] gi|326904285|gb|EGE51218.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis W-148] gi|328458020|gb|AEB03443.1| bifunctional riboflavin biosynthesis protein ribD [Mycobacterium tuberculosis KZN 4207] Length = 258 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 22/172 (12%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PELTCRLNGLQE 216 G +G + P F+ +LLR +D I+VG+GTV + + R Q Sbjct: 57 GTSGAMAGPGDRFV----FNLLRELADVIVVGVGTVRIEGYSGVRMGVVQRQHRQARGQS 112 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD 274 P I+ +L D + +AP+++ T DD LA + +I C D Sbjct: 113 EVPQLAIVTRSGRLDRDMAVFTRTEMAPLVLTTTAVADDTRQRLAGLAE---VIACSGDD 169 Query: 275 LKK-----LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 L++ L RG+ +L EGG + +F+ ++D + L + V+G Sbjct: 170 PGTVDEAVLVSQLAARGLRRILTEGGPTLLGTFVERDVLDELCLTIAPYVVG 221 >gi|226330324|ref|ZP_03805842.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198] gi|225201119|gb|EEG83473.1| hypothetical protein PROPEN_04238 [Proteus penneri ATCC 35198] Length = 177 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +L+ ++T L +G L ++GG V +F+N L+D +I+ R I++G GG P Sbjct: 95 ELQNIITELNAKGFNELYIDGGVTV-QNFLNEDLIDQMIITRFPILLG-GGTP 145 >gi|172056061|ref|YP_001812521.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15] gi|171988582|gb|ACB59504.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15] Length = 169 Score = 37.4 bits (85), Expect = 3.3, Method: Compositional matrix adjust. Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + C+IVK VI G T + HAE+ A+EEA + G YVTLEPC Sbjct: 27 IGCVIVKGDEVIATGYNHRETNHQATAHAELLAIEEACNKLANWRLEGCELYVTLEPC-- 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 P CA I+ I V+ DP Sbjct: 85 ----PMCAGAIMLSRIEHVIFGAVDP 106 >gi|307721944|ref|YP_003893084.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica DSM 16294] gi|306980037|gb|ADN10072.1| CMP/dCMP deaminase zinc-binding protein [Sulfurimonas autotrophica DSM 16294] Length = 145 Score = 37.4 bits (85), Expect = 3.4, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 42/101 (41%), Gaps = 39/101 (38%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63 V +IVKDG ++ G Y G P HAE+ A+ A Sbjct: 25 VGAVIVKDGRILSTG---YNGTPAGYTNCCDHWNDEYTKEHHEWSKTYEIHAEMNAIIWA 81 Query: 64 GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + AT YVTLEPCS C++ +I GI+R+V Sbjct: 82 ARKGISIEDATIYVTLEPCS------ECSKNLIASGIKRIV 116 >gi|331092011|ref|ZP_08340842.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402212|gb|EGG81783.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 17/105 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D ++M A++ ++ + + C+IV + +I RG T HAE+ A+++ Sbjct: 4 DEKYMREAIKQAKKAYEINEV--PIGCVIVCEDKIISRGYNRRTTDKNPLAHAEMIAIKK 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 A ++ T YVTLEPC C+ I++ +++VVV Sbjct: 62 ASKKVGDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVV 100 >gi|311106622|ref|YP_003979475.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8] gi|310761311|gb|ADP16760.1| tRNA-specific adenosine deaminase [Achromobacter xylosoxidans A8] Length = 163 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 16/121 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 P ++ DA FM AL+ ++ + P A ++ G ++GRG + + HAE+ Sbjct: 6 PWTAQDASFMELALQEAQAAYDIGEV-PVGALVVSAQGDILGRGYNRTIIDHDPTAHAEI 64 Query: 58 QALEEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL A E R G T YVTLEPC C ++ + RVV DP Sbjct: 65 VALRGAARALENYRLPGITVYVTLEPCVM------CIGAMLHARLARVVFGAYDPKTGAC 118 Query: 113 G 113 G Sbjct: 119 G 119 >gi|282856020|ref|ZP_06265309.1| ComE operon protein 2 [Pyramidobacter piscolens W5455] gi|282586139|gb|EFB91418.1| ComE operon protein 2 [Pyramidobacter piscolens W5455] Length = 180 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/81 (38%), Positives = 36/81 (44%), Gaps = 10/81 (12%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPP 87 CL K GI G G HAE+ A+ +A G GA+ Y T PCS Sbjct: 58 TGCLRTKLGIPSGERHEICRG-SHAEMNAIAQAASVGVSTAGASLYCTHSPCSF------ 110 Query: 88 CAQFIIECGIRRVVVCVDDPD 108 C + II GIRRVV PD Sbjct: 111 CTKAIINAGIRRVVYLYSYPD 131 >gi|213157131|ref|YP_002319176.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057] gi|215483589|ref|YP_002325810.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB307-0294] gi|239502187|ref|ZP_04661497.1| putative deaminase [Acinetobacter baumannii AB900] gi|301345934|ref|ZP_07226675.1| putative deaminase [Acinetobacter baumannii AB056] gi|213056291|gb|ACJ41193.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB0057] gi|213987060|gb|ACJ57359.1| tRNA-specific adenosine deaminase [Acinetobacter baumannii AB307-0294] Length = 158 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 19 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 78 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 79 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 110 >gi|167748501|ref|ZP_02420628.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662] gi|167652493|gb|EDR96622.1| hypothetical protein ANACAC_03245 [Anaerostipes caccae DSM 14662] Length = 170 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 12/97 (12%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L G GA YVTL PC+ CA+ II+ G++ V+ D Sbjct: 81 TKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEVIYMQD 134 Query: 106 ---DPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 D D+ V+ + + G+ + + I LH Sbjct: 135 KYADDDMTVASKRM--FDMAGVKYRKFEPKDQTIELH 169 >gi|160931212|ref|ZP_02078614.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753] gi|156869767|gb|EDO63139.1| hypothetical protein CLOLEP_00049 [Clostridium leptum DSM 753] Length = 163 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 33/92 (35%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVI--GRGVTAYG--GCPHAEVQALEEA-----GEEARGATAYVTLEPCSH 81 V +IVKDG++I GR G HAE++A++ A G YVTLEPC Sbjct: 33 VGAVIVKDGVLISAGRNRRELGKNALYHAELEAIDGACKALGGWRLWQCDLYVTLEPC-- 90 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C II IRR+ DP G Sbjct: 91 ----PMCTGAIINARIRRLCYGAKDPKAGSCG 118 >gi|56961816|ref|YP_173538.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16] gi|56908050|dbj|BAD62577.1| cytosine/adenosine deaminase [Bacillus clausii KSM-K16] Length = 165 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + +I+K+G +I + HAE+ A+E+A ++ G T YVTLEPC Sbjct: 28 IGAVIIKEGKLIASAYNLREANHSALAHAELLAIEQANKKLGAWRLEGCTLYVTLEPC-- 85 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P CA I++ I VV D +G + L ++ Sbjct: 86 ----PMCAGAIVQSRIPTVVYGAQDQKAGCAGTLMNLLQEQ 122 >gi|325981113|ref|YP_004293515.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212] gi|325530632|gb|ADZ25353.1| CMP/dCMP deaminase zinc-binding protein [Nitrosomonas sp. AL212] Length = 152 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V+ G+++GRG ++ HAE+ A+ +AG YVTLEPC Sbjct: 19 VGAVVVQHGVIVGRGYNRPISTADPSAHAEIMAMRDAGGHMANYRLLDCVLYVTLEPCVM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C I I+R+V DP G Sbjct: 79 ------CIGAIFHARIQRLVYAAADPKTGACG 104 >gi|225456327|ref|XP_002283817.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297734422|emb|CBI15669.3| unnamed protein product [Vitis vinifera] Length = 229 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++G+++G G + GC HAEV A L Sbjct: 95 ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSKTGDPLETKYPYVCHAEVNAILNTNHA 154 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ II+ G+ V+ V+ Sbjct: 155 SAAGQRLYVTMFPCNE------CAKIIIQSGVSEVIYFVE 188 >gi|111221547|ref|YP_712341.1| hypothetical protein FRAAL2113 [Frankia alni ACN14a] gi|111149079|emb|CAJ60762.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (Riboflavin biosynthesis protein ribD) [Frankia alni ACN14a] Length = 282 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 24/172 (13%) Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD-------PELTCRLN--GLQEHS 218 G S P+ G + LLR SD +LVG GTV ++ PE R GL Sbjct: 85 GGRSGPLGGEADRRVFQLLRWLSDVVLVGAGTVRHENYGPVIVPPERRDRRQAAGLAAVP 144 Query: 219 PMRII-----LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--D 271 P+ +I LDP +L D+++ P+++ + P A ++ C Sbjct: 145 PIAVITATAGLDPGARL-FDAEV------RPIVLTCDAAPPAKRQAL-AAVAEVVLCGET 196 Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D L L RG+T +L EGG + + L+D + L + ++ G G Sbjct: 197 TVDPAAALAALAERGMTRVLTEGGPLLHAQLAGAGLLDELCLTVAPMLAGPG 248 >gi|295102170|emb|CBK99715.1| Deoxycytidylate deaminase [Faecalibacterium prausnitzii L2-6] Length = 159 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 55/142 (38%), Gaps = 46/142 (32%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP-------- 53 ++D FM AL + S +PS AC++ + ++ G Y G P Sbjct: 8 NWDEYFMGIALL-----TAMRSKDPSSQVGACIVSPENKILSLG---YNGMPIGCDDDAM 59 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAE+ A L A +GA YVTL PC+ C + II+ Sbjct: 60 PWEREGEPLNTKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQS 113 Query: 96 GIRRVVVCVD---DPDVRVSGR 114 GI VV D D D V+ R Sbjct: 114 GIAEVVYYSDKYHDTDSSVAAR 135 >gi|261855229|ref|YP_003262512.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus neapolitanus c2] gi|261835698|gb|ACX95465.1| CMP/dCMP deaminase zinc-binding protein [Halothiobacillus neapolitanus c2] Length = 153 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 57/160 (35%), Gaps = 25/160 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQA 59 SS D +F+ AL ++ V ++V+ G VI G A HAE+ A Sbjct: 5 SSVDRQFIQQAL--DEANLAAADGEVPVGAVVVRQGKVIATGRNAPIRLNDPSAHAEILA 62 Query: 60 LEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 L AG T YVTLEPC P C I I RVV DP G Sbjct: 63 LRAAGMALANYRLDDCTLYVTLEPC------PMCMAAISHARIARVVFAAPDPRAGACGG 116 Query: 115 GLQ-----WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149 + W ++ E E L + EKR Sbjct: 117 AIDLNRAPWHHHSVVVDTGPCEQEAAELLRHFFQ---EKR 153 >gi|256372768|ref|YP_003110592.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM 10331] gi|256009352|gb|ACU54919.1| CMP/dCMP deaminase zinc-binding [Acidimicrobium ferrooxidans DSM 10331] Length = 156 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 52/114 (45%), Gaps = 17/114 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQ 58 +S+ D R++ A + T+ P V ++V+ G V+G + HAE+ Sbjct: 2 LSADDRRWLDVAFGLAE-DAARTAEVP-VGAVVVRSGRVLGARHNETIERRSSLAHAELL 59 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 AL +A +A GA YVTLEPC+ CA ++ RRVV DP Sbjct: 60 ALSDALADAGDGYVLGADVYVTLEPCAM------CAGALVLARARRVVFAAWDP 107 >gi|255659416|ref|ZP_05404825.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544] gi|260848379|gb|EEX68386.1| tRNA-specific adenosine deaminase [Mitsuokella multacida DSM 20544] Length = 169 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 16/109 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 DA +M AL ++ L P A L+ ++G V+ RG + HAE+ A+ E Sbjct: 4 DAYYMRLALEEAQKAYDLEEV-PIGAVLVDREGEVVARGHNMREVWHDATAHAEMIAIRE 62 Query: 63 A-GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 A +E R G T YVT+EPC P CA I+ + RVV D Sbjct: 63 ACAKEGRWRLSGLTLYVTIEPC------PMCAGAIVMSRVDRVVYGSTD 105 >gi|157157409|ref|YP_001463881.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A] gi|193064070|ref|ZP_03045155.1| tRNA-specific adenosine deaminase [Escherichia coli E22] gi|194427252|ref|ZP_03059802.1| tRNA-specific adenosine deaminase [Escherichia coli B171] gi|293446913|ref|ZP_06663335.1| yfhC [Escherichia coli B088] gi|309794388|ref|ZP_07688811.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 145-7] gi|157079439|gb|ABV19147.1| tRNA-specific adenosine deaminase [Escherichia coli E24377A] gi|192929305|gb|EDV82914.1| tRNA-specific adenosine deaminase [Escherichia coli E22] gi|194414573|gb|EDX30845.1| tRNA-specific adenosine deaminase [Escherichia coli B171] gi|195183132|dbj|BAG66679.1| putative deaminase [Escherichia coli O111:H-] gi|291323743|gb|EFE63171.1| yfhC [Escherichia coli B088] gi|308121844|gb|EFO59106.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 145-7] gi|323159237|gb|EFZ45226.1| tRNA-specific adenosine deaminase [Escherichia coli E128010] Length = 178 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDVLHHPGM 137 >gi|114705782|ref|ZP_01438685.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi HTCC2506] gi|114538628|gb|EAU41749.1| CMP/dCMP deaminase, zinc-binding protein [Fulvimarina pelagi HTCC2506] Length = 148 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 49/122 (40%), Gaps = 17/122 (13%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEA- 63 RFM AL +R T V +IV+DG +I + A HAE+ A+ A Sbjct: 4 RFMDEALEEARR--AATRGEVPVGAVIVRDGEIIAKAGNETRAAKDPTAHAELLAIRRAC 61 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E YVTLEPC+ CA I IRR+ DP G ++ Sbjct: 62 LALEAERLTDCDLYVTLEPCAM------CAGAISFARIRRLYFGAADPKGGAVENGARFF 115 Query: 120 SQ 121 SQ Sbjct: 116 SQ 117 >gi|317471969|ref|ZP_07931301.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Anaerostipes sp. 3_2_56FAA] gi|316900373|gb|EFV22355.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Anaerostipes sp. 3_2_56FAA] Length = 170 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L G GA YVTL PC+ CA+ II+ G++ V+ D Sbjct: 81 TKYFYVCHAELNAILNYGGGSLYGARVYVTLFPCNE------CAKAIIQSGMKEVIYMQD 134 Query: 106 ---DPDVRVSGRGL 116 D D+ V+ + + Sbjct: 135 KYADDDMTVASKKM 148 >gi|256848137|ref|ZP_05553581.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN] gi|256715197|gb|EEU30174.1| tRNA-adenosine deaminase [Lactobacillus coleohominis 101-4-CHN] Length = 169 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 17/116 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 MP + A FM AA+ + H + +IVKDG +IG G HAE Sbjct: 3 MPNYTEPADFMRAAI--NEAHQAELLGEVPIGAVIVKDGQIIGAGHNMREKYQQSIYHAE 60 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + A+ EA + YVTLEPC C+ II +R+V DP Sbjct: 61 ILAIMEACDALHSWRLEDCDLYVTLEPCI------MCSGAIIHSRLRQVYYAAPDP 110 >gi|150387879|ref|YP_001317928.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens QYMF] gi|149947741|gb|ABR46269.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens QYMF] Length = 151 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 +A +MS AL ++ L + +I+++ VI + + HAE+ A++ Sbjct: 1 MEAYYMSLALEEAKKAYELGEV--PIGAIILRENKVIAAAHNLRESHHDATAHAEIIAIQ 58 Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A G +T +VT+EPC P CA I++ I RVV+ DP G + Sbjct: 59 AACRRLGGWRLTNSTLFVTIEPC------PMCAGAILQSRIDRVVIGAMDPKAGACGSII 112 Query: 117 QWLSQK 122 L+ Sbjct: 113 NLLNNN 118 >gi|20089035|ref|NP_615110.1| dCMP deaminase [Methanosarcina acetivorans C2A] gi|19913892|gb|AAM03590.1| dCMP deaminase [Methanosarcina acetivorans C2A] Length = 150 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 13/77 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G GAT Y T +PC+ CA+ II I++VV DPD Sbjct: 79 HAEQNAIIQAAIHGVSIAGATIYCTQQPCTL------CAKMIINSNIKKVVYSTPDPDT- 131 Query: 111 VSGRGLQWLSQKGIIVD 127 L++ G+ V+ Sbjct: 132 ---DSLEFFRSAGVEVE 145 >gi|9631183|ref|NP_047965.1| gp20 [Streptomyces phage phiC31] gi|3947493|emb|CAA07144.1| gp20 [Streptomyces phage phiC31] Length = 117 Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 49 YGGC--PHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 Y C HAE A+ A E GAT Y T EPC P C I GIRRVV Sbjct: 60 YANCVADHAERNAIRHAPSAELAGATLYTTREPC------PACWTLIRAAGIRRVV 109 >gi|108758559|ref|YP_630178.1| cytidine and deoxycytidylate deaminase zinc-binding domain-containing protein [Myxococcus xanthus DK 1622] gi|108462439|gb|ABF87624.1| cytidine and deoxycytidylate deaminase zinc-binding domain protein [Myxococcus xanthus DK 1622] Length = 154 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 17/116 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEE 62 D FM AL +R L V + V +G V+G G HAE+ A++ Sbjct: 3 DEAFMQQALSLAREAAELGEV--PVGAVAVLNGEVVGAGFNRREVDRNPLAHAEMLAMDA 60 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A + G T YVTLEPC+ CA +++ + R+V DP G Sbjct: 61 AARKIGAWRLSGVTLYVTLEPCAM------CAGGLVQSRVTRLVFGAFDPKAGAVG 110 >gi|220927719|ref|YP_002504628.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10] gi|219998047|gb|ACL74648.1| CMP/dCMP deaminase zinc-binding [Clostridium cellulolyticum H10] Length = 145 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 38/79 (48%), Gaps = 13/79 (16%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A G GAT YVT +PC CA+ I GI R+V D PD Sbjct: 77 HAEQNAIVQAAYSGTSVSGATLYVTNQPCV------LCAKLAINAGIVRIVFNGDYPD-- 128 Query: 111 VSGRGLQWLSQKGIIVDRM 129 + LS+ GI V R+ Sbjct: 129 --ELSMTLLSEAGIEVVRL 145 >gi|313115327|ref|ZP_07800802.1| cytidine and deoxycytidylate deaminase zinc-binding region [Faecalibacterium cf. prausnitzii KLE1255] gi|310622358|gb|EFQ05838.1| cytidine and deoxycytidylate deaminase zinc-binding region [Faecalibacterium cf. prausnitzii KLE1255] Length = 159 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 10/72 (13%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L A +GA YVTL PC+ C + II+ GI VV D Sbjct: 70 TKYMYVCHAELNAILNSAHNNLKGARVYVTLFPCNE------CTKAIIQSGIAEVVYYGD 123 Query: 106 ---DPDVRVSGR 114 D D V+ R Sbjct: 124 KYHDSDSSVAAR 135 >gi|294795071|ref|ZP_06760206.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family protein [Veillonella sp. 3_1_44] gi|294454433|gb|EFG22807.1| LOW QUALITY PROTEIN: cytidine/deoxycytidylate deaminase family protein [Veillonella sp. 3_1_44] Length = 164 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M S D FM AL + H + ++V++ +I R + HAE Sbjct: 13 MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 V + EA + + G T YVT+EPC P CA II I RVV D Sbjct: 71 VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 119 >gi|283477539|emb|CAY73455.1| tRNA-specific adenosine deaminase [Erwinia pyrifoliae DSM 12163] Length = 157 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 21/125 (16%) Query: 11 MSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 M ALR +R W G V ++V DG IG G + + HAE+ AL + G Sbjct: 1 MRHALRLARRAWDEG----EVPVGAVLVLDGQAIGEGWNRPIGQHDPTAHAEMMALRQGG 56 Query: 65 ---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E R T YVTLEPC CA +I + R+V D +G L L Sbjct: 57 KVIENYRLLDTTLYVTLEPCV------MCAGAMIHGRVGRLVYGARDAKTGAAGSLLDVL 110 Query: 120 SQKGI 124 G+ Sbjct: 111 GHAGM 115 >gi|323978411|gb|EGB73496.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli TW10509] Length = 167 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 30 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 89 -----MCAGAMIHSRISRVVFGARDAKTGAAGSLMDVLHHPGM 126 >gi|193077204|gb|ABO11996.2| putative deaminase [Acinetobacter baumannii ATCC 17978] Length = 158 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 43/98 (43%), Gaps = 18/98 (18%) Query: 31 VACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEEARG------ATAYVTLEPCS 80 V +IV +IG G A G HAE+QA+ A E + AT YVTLEPC+ Sbjct: 19 VGAVIVSQNKLIGAGFNAPIGLSDPTAHAEIQAIRAACESLKNYRLPEDATLYVTLEPCT 78 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDV--RVSGRGL 116 C ++ I+ VV +P VS R L Sbjct: 79 M------CVGALVHARIKHVVFGTTEPKAGSLVSARQL 110 >gi|237736005|ref|ZP_04566486.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817] gi|229421886|gb|EEO36933.1| deoxycytidylate deaminase [Fusobacterium mortiferum ATCC 9817] Length = 163 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 42/131 (32%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP--------- 53 +D FM AL G S +P+ AC++ ++ ++G G Y G P Sbjct: 9 WDEYFMGVALL-----SGKRSKDPNTQVGACIVNEEKKIVGVG---YNGLPIGCSDDEYP 60 Query: 54 ----------------HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 HAE+ A+ + + + T YV L PC C++ II+ GI Sbjct: 61 WEREGEFLETKYPFVCHAELNAILNSTKSLKNCTIYVALFPCHE------CSKAIIQSGI 114 Query: 98 RRVVVCVDDPD 108 R +V D D Sbjct: 115 RELVYLSDKYD 125 >gi|163758411|ref|ZP_02165499.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea phototrophica DFL-43] gi|162284700|gb|EDQ34983.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Hoeflea phototrophica DFL-43] Length = 148 Score = 37.4 bits (85), Expect = 3.9, Method: Compositional matrix adjust. Identities = 35/105 (33%), Positives = 45/105 (42%), Gaps = 25/105 (23%) Query: 31 VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALEEAG-----EEARGATAYVTL 76 V +IV DG VI R VTA HAE+ A+ +A E GA YVTL Sbjct: 25 VGAVIVLDGEVIARAGNRTRELNDVTA-----HAEILAIRQAAMQLSSERLIGADLYVTL 79 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EPC+ CA I +RR+ DD G+++ Q Sbjct: 80 EPCTM------CAAAISFARLRRLYYAADDEKGGAVTSGVRFFDQ 118 >gi|313902173|ref|ZP_07835582.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM 13965] gi|313467573|gb|EFR63078.1| CMP/dCMP deaminase zinc-binding [Thermaerobacter subterraneus DSM 13965] Length = 186 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 45/151 (29%) Query: 6 FDARFMSAALRFSRWHVGLTSTNP--SVACLIVKDGIVIGRGVTAYGGCP---------- 53 +DA FM A +R ST P V ++V+D ++ T Y G P Sbjct: 44 WDAYFMELAEVVAR-----RSTCPRRHVGAVLVRDRRILA---TGYNGAPPGFPHCTEAG 95 Query: 54 ------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 HAE A+ +A G +G+T Y T PC H CA+ +I G+ Sbjct: 96 CLMQDGHCVRTIHAEANAILQAALHGVTVKGSTLYTTATPCLH------CAKLLIGAGVV 149 Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 RVV PD R +++L + GI ++ M Sbjct: 150 RVVYRDWYPDP----RAVEFLERAGIPLEPM 176 >gi|282849118|ref|ZP_06258503.1| cytidine and deoxycytidylate deaminase zinc-binding region [Veillonella parvula ATCC 17745] gi|282580822|gb|EFB86220.1| cytidine and deoxycytidylate deaminase zinc-binding region [Veillonella parvula ATCC 17745] Length = 181 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M S D FM AL + H + ++V++ +I R + HAE Sbjct: 13 MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 70 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 V + EA + + G T YVT+EPC P CA II I RVV D Sbjct: 71 VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 119 >gi|289547972|ref|YP_003472960.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM 14484] gi|289181589|gb|ADC88833.1| CMP/dCMP deaminase zinc-binding protein [Thermocrinis albus DSM 14484] Length = 156 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 15/98 (15%) Query: 21 HVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV----QALEEAGEE-ARGAT 71 H V C++VK+G +I R + HAE+ +AL++ GE G T Sbjct: 17 HRAFRKGEIPVGCVVVKEGRIIARAHNRTIALKDPTAHAEILAIRKALKKLGESFLYGCT 76 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 YVTLEPC+ CA ++ + +V+ D + Sbjct: 77 LYVTLEPCAM------CAYALVLARVDKVIFLAQDEKL 108 >gi|51246206|ref|YP_066090.1| cytosine deaminase [Desulfotalea psychrophila LSv54] gi|50877243|emb|CAG37083.1| probable cytosine deaminase [Desulfotalea psychrophila LSv54] Length = 145 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 16/102 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +F + A+ +R G+ + + ++V DG ++GRG V HAE+ LE AG Sbjct: 3 KFFAVAVAEAR--KGMATGGIPIGSVLVIDGQIVGRGHNQRVQRGSVVLHAEMDCLENAG 60 Query: 65 E----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + R AT Y TL PC C+ ++ GI RVV+ Sbjct: 61 RIKAADYRRATLYSTLSPCDM------CSGAVLLYGIPRVVI 96 >gi|312215394|emb|CBX95346.1| similar to cytosine deaminase [Leptosphaeria maculans] Length = 152 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 18/109 (16%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTN-PSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 +SS D F AAL +R G + P ACL+ G ++GRG + HAE+ Sbjct: 1 MSSADIGFQ-AALEEAR--TGSSEGGLPIGACLVSAQGKILGRGHNMRIQRGSATLHAEI 57 Query: 58 QALEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 ALE AG + AT Y TL PC C I ++RVV+ Sbjct: 58 SALERAGRLPASAYQDATMYTTLSPCDM------CTGACILYKVKRVVI 100 >gi|197285737|ref|YP_002151609.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320] gi|194683224|emb|CAR43904.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320] Length = 176 Score = 37.0 bits (84), Expect = 4.2, Method: Compositional matrix adjust. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V + +I +G + HAE+ AL + G+ + AT Y+TLEPC Sbjct: 29 VGAVLVAENKIIAKGWNHSIIDNDPTAHAEIMALRKGGKHLQNYRLLDATLYITLEPCV- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA I+ ++RVV D +G + L G+ Sbjct: 88 -----MCAGAIVHSRVKRVVYGASDLKTGAAGSFIDILQHPGM 125 >gi|225867781|ref|YP_002743729.1| deaminase [Streptococcus equi subsp. zooepidemicus] gi|225701057|emb|CAW97859.1| putative deaminase [Streptococcus equi subsp. zooepidemicus] Length = 164 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVK G +IGRG A HAE+ A+ EA Sbjct: 11 FMREALKEAE--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87 >gi|316971587|gb|EFV55344.1| tRNA-specific adenosine deaminase 2 [Trichinella spiralis] Length = 311 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%) Query: 31 VACLIVKDGIVIGRG---VTAY-GGCPHAEVQALEEAGEEARG-----------ATAYVT 75 V C+++ + ++IGRG V Y C HAE++A +EA + T +VT Sbjct: 26 VGCVLLYENVIIGRGHNRVNFYKNACRHAEMEAFDEAFLWCKANCFSFNDVFLKTTLFVT 85 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 EPC CA I + ++RVV P+ R G G Sbjct: 86 CEPCMM------CAALICKMQLKRVVYGC--PNDRFGGFG 117 >gi|317123562|ref|YP_004097674.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043] gi|315587650|gb|ADU46947.1| tRNA-adenosine deaminase [Intrasporangium calvum DSM 43043] Length = 190 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/88 (40%), Positives = 40/88 (45%), Gaps = 15/88 (17%) Query: 29 PSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGEEA-----RGATAYVTLEPC 79 P A +I DG+VIGRG V G P HAEV AL A GAT VTLEPC Sbjct: 40 PVGAVVIGSDGLVIGRGRNVREELGDPTGHAEVIALRSAAAAVGTWRLDGATLAVTLEPC 99 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDP 107 CA I + R+V DP Sbjct: 100 VM------CAGAAIAARVERIVFGAWDP 121 >gi|194044048|ref|XP_001925118.1| PREDICTED: deoxycytidylate deaminase-like [Sus scrofa] Length = 178 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130 >gi|170019158|ref|YP_001724112.1| tRNA-specific adenosine deaminase [Escherichia coli ATCC 8739] gi|169754086|gb|ACA76785.1| CMP/dCMP deaminase zinc-binding [Escherichia coli ATCC 8739] Length = 167 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 30 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 89 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHSGM 126 >gi|254252116|ref|ZP_04945434.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158] gi|124894725|gb|EAY68605.1| Cytidine/deoxycytidylate deaminase [Burkholderia dolosa AUO158] Length = 206 Score = 37.0 bits (84), Expect = 4.3, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 50/121 (41%), Gaps = 17/121 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV 57 PVS+ DA FM L + + V ++V+ VI RG + + HAE+ Sbjct: 39 PVSARDAHFMR--LAQAAAEEARAAGEVPVGAVLVRGDEVIARGFNHPIGGHDPSAHAEM 96 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL A + + G YVTLEPC CA I+ I RVV DP Sbjct: 97 AALRMAAQRLQNYRMPGCELYVTLEPCLM------CAGAIMHARIARVVYGAPDPKTGAC 150 Query: 113 G 113 G Sbjct: 151 G 151 >gi|218461412|ref|ZP_03501503.1| putative nitrogen fixation symbiosis related protein [Rhizobium etli Kim 5] Length = 157 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 40/127 (31%), Positives = 56/127 (44%), Gaps = 27/127 (21%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---------VTAYGGCPHAEVQA 59 RFM AL +R G P + ++V D I + R VTA HAE+ A Sbjct: 11 RFMEMALEEARA-AGERGEVP-IGAVVVIDDIAVSRSGNRTRELNDVTA-----HAEIAA 63 Query: 60 L----EEAGEEA-RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 + E G+E GA YVTLEPC+ CA I +RR+ +DP Sbjct: 64 IRLACEALGQERLAGADLYVTLEPCTM------CAAAISFARVRRLYYGAEDPKGGAVDN 117 Query: 115 GLQWLSQ 121 G+++ +Q Sbjct: 118 GVRFYAQ 124 >gi|193068331|ref|ZP_03049294.1| tRNA-specific adenosine deaminase [Escherichia coli E110019] gi|260845189|ref|YP_003222967.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str. 12009] gi|192958283|gb|EDV88723.1| tRNA-specific adenosine deaminase [Escherichia coli E110019] gi|257760336|dbj|BAI31833.1| tRNA-specific adenosine deaminase [Escherichia coli O103:H2 str. 12009] Length = 167 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 30 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 89 -----MCAGAMIHSRIGRVVFGAHDAKTGAAGSLMDVLHHPGM 126 >gi|170290377|ref|YP_001737193.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174457|gb|ACB07510.1| carbon-monoxide dehydrogenase, catalytic subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 640 Score = 37.0 bits (84), Expect = 4.4, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 61/153 (39%), Gaps = 9/153 (5%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHA--EVQALEEAGEEARGATA 72 +R HV +T LI D +V+G G A H + +A E AG R Sbjct: 464 VRHDSSHVAITKE------LIANDILVVGTGCWAIAMSKHGFFKPEAAEMAGPGLREVCK 517 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES 132 + + P H G C++ +I + VD D+ +G +W S+K + + + Sbjct: 518 ALGIPPALHMGSCVDCSRMLIALAALADHLGVDISDLPAAGSAPEWYSEKAVSIGSYFVA 577 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 G + +H QV + + ++++G Sbjct: 578 SG-LLVHLGTIPQVLGSKRVVELLTKDAESLVG 609 >gi|320165206|gb|EFW42105.1| deoxycytidylate deaminase [Capsaspora owczarzaki ATCC 30864] Length = 192 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 11/73 (15%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A L + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 99 TKYMYVCHAELNAVLNKNASDVKGCTIYVALFPCNE------CAKIIIQSGIKEVIYKSD 152 Query: 106 D----PDVRVSGR 114 P+ VS R Sbjct: 153 KYHDRPEFVVSRR 165 >gi|225869728|ref|YP_002745675.1| deaminase [Streptococcus equi subsp. equi 4047] gi|225699132|emb|CAW92326.1| putative deaminase [Streptococcus equi subsp. equi 4047] Length = 164 Score = 37.0 bits (84), Expect = 4.5, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVK G +IGRG A HAE+ A+ EA Sbjct: 11 FMREALKEAE--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAINEANA 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87 >gi|237845333|ref|XP_002371964.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49] gi|211969628|gb|EEB04824.1| hypothetical protein TGME49_000420 [Toxoplasma gondii ME49] Length = 180 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 10/81 (12%) Query: 52 CPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 C HAE AL EAG + A T YVT PC CA+ +++ IR VV + D Sbjct: 94 CIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLVVQSAIRTVVYAEEYDD-- 145 Query: 111 VSGRGLQWLSQKGIIVDRMME 131 SG L L++ G+ V R + Sbjct: 146 KSG-ALDLLTRMGVSVRRFAD 165 >gi|161502277|ref|YP_001569389.1| tRNA-specific adenosine deaminase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863624|gb|ABX20247.1| hypothetical protein SARI_00307 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 176 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R T YVTLEPC Sbjct: 41 VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRRVV D +G + L G+ Sbjct: 100 -----MCAGAMVHSRIRRVVFGARDAKTGAAGSLIDVLHHPGM 137 >gi|155372299|ref|NP_001094762.1| deoxycytidylate deaminase [Bos taurus] gi|151555965|gb|AAI49762.1| DCTD protein [Bos taurus] gi|296472434|gb|DAA14549.1| dCMP deaminase [Bos taurus] Length = 178 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A + + + +G T YV L PC+ CA+ II+ GI+ V+ D Sbjct: 77 TKYPYVCHAELNAIMNKNSADVKGCTMYVALFPCNE------CAKLIIQAGIKEVIFMSD 130 >gi|225013101|ref|ZP_03703515.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A] gi|225002759|gb|EEG40741.1| CMP/dCMP deaminase zinc-binding [Flavobacteria bacterium MS024-2A] Length = 154 Score = 37.0 bits (84), Expect = 4.6, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 44/101 (43%), Gaps = 20/101 (19%) Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+QA+ A G+ G T YVTLEPC CA ++ RVV D Sbjct: 63 HAEMQAITAAANYLNGKYLVGCTLYVTLEPCV------MCAGALVWSQFDRVVFGASD-- 114 Query: 109 VRVSGRGLQW----LSQKGIIVDRMMESEGKIFLHAYLTRQ 145 S RG Q L K I+ ++ E K L A+ ++ Sbjct: 115 ---SKRGFQQANLDLHPKTILSGGVLAEEAKALLDAFFAKK 152 >gi|195977341|ref|YP_002122585.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195974046|gb|ACG61572.1| tRNA-specific adenosine-34 deaminase [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 164 Score = 37.0 bits (84), Expect = 4.7, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ ++ L + C+IVK G +IGRG A HAE+ A+ EA Sbjct: 11 FMREALKEAK--KSLLKDEIPIGCVIVKAGHIIGRGHNAREERNQAIMHAEIMAISEANV 68 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 69 HEGNWRLLDTTLFVTIEPC 87 >gi|308187798|ref|YP_003931929.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1] gi|308058308|gb|ADO10480.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1] Length = 163 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 21/129 (16%) Query: 7 DARFMSAALRFSR--WHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQAL 60 D +M AL +R W G V ++V++ VIG G + + HAE+ AL Sbjct: 5 DEYWMRHALSLARRAWEQG----EVPVGAVLVQNDRVIGEGWNRPIGQHDPTAHAEIMAL 60 Query: 61 EEAG---EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G E R T YVTLEPC CA ++ I R+V D +G Sbjct: 61 RQGGKVLENYRLLDTTLYVTLEPCV------MCAGAMVHSRISRLVYGAHDIKSGAAGSL 114 Query: 116 LQWLSQKGI 124 L L G+ Sbjct: 115 LDVLGHPGM 123 >gi|299134221|ref|ZP_07027414.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2] gi|298590968|gb|EFI51170.1| CMP/dCMP deaminase zinc-binding [Afipia sp. 1NLS2] Length = 148 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 45/107 (42%), Gaps = 17/107 (15%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64 FM AL+ + + + + C++V DG VI R + HAE+ AL EA Sbjct: 6 FMDLALK--QAEIAASGGEVPIGCVVVHDGAVIAQAGNRTLADRDPTAHAEMVALREAAR 63 Query: 65 ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 E YVTLEPC+ CA I IRR+ DP Sbjct: 64 KLGRERLTDCDLYVTLEPCTM------CAGAISHARIRRLYYGALDP 104 >gi|157376253|ref|YP_001474853.1| cytidine/deoxycytidylate deaminase family protein [Shewanella sediminis HAW-EB3] gi|157318627|gb|ABV37725.1| cytidine/deoxycytidylate deaminase family protein [Shewanella sediminis HAW-EB3] Length = 177 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKD V+ G + + HAE+Q L EAG E R T YVTLEPC+ Sbjct: 29 VGAVLVKDDKVVAVGSNDCIGQHDPSAHAEMQCLREAGRLVENYRLLDTTLYVTLEPCAM 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ + R+V D +G Sbjct: 89 ------CAGAMVHSRVSRLVFGAKDEKTGAAG 114 >gi|23097839|ref|NP_691305.1| hypothetical protein OB0384 [Oceanobacillus iheyensis HTE831] gi|22776063|dbj|BAC12340.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831] Length = 159 Score = 37.0 bits (84), Expect = 4.8, Method: Compositional matrix adjust. Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG---VTAYGG-CPHAEVQALEEAGE 65 FMS A+ + ++ +I+KD +I G VT Y HAEVQA+ +A E Sbjct: 10 FMSKAIELAV--SNISQGGGPFGAVIIKDNKIIAEGTNQVTNYNDPTAHAEVQAIRQACE 67 Query: 66 -----EARGATAYVTLEPC 79 E +G T Y + EPC Sbjct: 68 KLSTFELKGCTLYTSCEPC 86 >gi|269797481|ref|YP_003311381.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM 2008] gi|269094110|gb|ACZ24101.1| CMP/dCMP deaminase zinc-binding protein [Veillonella parvula DSM 2008] Length = 169 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 17/115 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M S D FM AL + H + ++V++ +I R + HAE Sbjct: 1 MDERSRDEYFMGFALEEA--HKAYALGEIPIGAILVQNNTIISRHHNRRELDHDATAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 V + EA + + G T YVT+EPC P CA II I RVV D Sbjct: 59 VLVIREACDVLKRWRLTGCTLYVTIEPC------PMCAGAIINSRIDRVVYGASD 107 >gi|24378807|ref|NP_720762.1| putative deaminase [Streptococcus mutans UA159] gi|24376681|gb|AAN58068.1|AE014879_5 putative deaminase [Streptococcus mutans UA159] Length = 156 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65 FM AL+ ++ + L + C+IVKDG +IG G A HAE+ A+ +A Sbjct: 12 FMGEALKEAQ--LSLQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TQESWRLLDCTLFVTIEPC 88 >gi|270159636|ref|ZP_06188292.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968] gi|289165578|ref|YP_003455716.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150] gi|269987975|gb|EEZ94230.1| tRNA-specific adenosine deaminase [Legionella longbeachae D-4968] gi|288858751|emb|CBJ12656.1| tRNA-specific adenosine deaminase [Legionella longbeachae NSW150] Length = 149 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 15/87 (17%) Query: 29 PSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPC 79 P A L+ + ++G G ++ HAE+QA+ +A + + T YVTLEPC Sbjct: 24 PVGAILVSNENQLLGAGRNLIQKSHDPSSHAEIQAIRQASQRLQNHRLLDTTLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDD 106 + CA ++ I R+V D Sbjct: 84 A------MCAGLMVHARISRLVFATRD 104 >gi|168187922|ref|ZP_02622557.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str. Eklund] gi|169294234|gb|EDS76367.1| tRNA-specific adenosine deaminase [Clostridium botulinum C str. Eklund] Length = 147 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 17/108 (15%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 +FM AL ++ + + V +IV++G +I T HAE+ A+++A Sbjct: 4 KFMDIALDEAK--LAMEKDEVPVGAVIVRNGEIIASAHNLRETLNDPTAHAEMLAIKKAS 61 Query: 65 EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + YVTLEPC P CA II+ IR++ + DP Sbjct: 62 SVLKNWRLNECEMYVTLEPC------PMCAGAIIQSRIRKIYIGTIDP 103 >gi|159037136|ref|YP_001536389.1| hypothetical protein Sare_1500 [Salinispora arenicola CNS-205] gi|157915971|gb|ABV97398.1| bifunctional deaminase-reductase domain protein [Salinispora arenicola CNS-205] Length = 248 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 81/200 (40%), Gaps = 22/200 (11%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV-------- 200 R H+ + S D + + G S ++G K LLR D ++V GT+ Sbjct: 33 RPHLRVNFVTSVDGAVTVDGY-SAGLSGEPDKRVFGLLRMLCDGLVVAGGTMRHERYRPI 91 Query: 201 -LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 L + R +GL ++ P +++ L A + PV++ LA Sbjct: 92 RLDERRRAWRREHGLPQY-PTLVVVSGSLNLDPAQAAFVDAPVRPVVLTHAAATAPPGLA 150 Query: 260 FRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + +++ C D DL L L RG+ LL EGG + + + LVD + L + Sbjct: 151 ---EVADVVECGDDRVDLTAGLAELRRRGLGQLLCEGGPHLFGALTAADLVDEVCLTLAP 207 Query: 318 IVIGEG------GIPSPLEE 331 ++ G G G PSP+ Sbjct: 208 LLAGPGPGRITAGGPSPVRH 227 >gi|53802428|ref|YP_112823.1| zinc-binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53756189|gb|AAU90480.1| zinc-binding domain protein [Methylococcus capsulatus str. Bath] Length = 137 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 25 TSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVT 75 T+ + ++VK+G ++G G ++ + HAE+ AL AG T YVT Sbjct: 8 TAGEVPIGAVLVKNGEILGEGHNQPISTHDPTAHAEIVALRAAGARLGNYRLVDTTLYVT 67 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 LEPC+ C I+ + R+V DP Sbjct: 68 LEPCAM------CMGAILHARVGRLVFGAADP 93 >gi|27382607|ref|NP_774136.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110] gi|27355779|dbj|BAC52761.1| nitrogen fixation protein [Bradyrhizobium japonicum USDA 110] Length = 152 Score = 37.0 bits (84), Expect = 4.9, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 17/121 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG- 64 FM AL+ + + G P + C++V++ VI R +T Y HAE+ AL EA Sbjct: 10 FMDLALKTAE-NAGKAGEVP-IGCVVVRNYEVIATAANRTLTDYDPTAHAEIVALREAAK 67 Query: 65 ----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E YVTLEPC+ CA I +RR+ DP G+++ + Sbjct: 68 KIGSERLVDCDLYVTLEPCTM------CAGAISFARVRRLYYGAADPKGGAVESGVRFFA 121 Query: 121 Q 121 Sbjct: 122 S 122 >gi|332522875|ref|ZP_08399127.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus porcinus str. Jelinkova 176] gi|332314139|gb|EGJ27124.1| cytidine and deoxycytidylate deaminase zinc-binding region [Streptococcus porcinus str. Jelinkova 176] Length = 176 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE 65 FM AL+ + L + C+IVK+G +IGRG A HAE+ A+ EA Sbjct: 11 FMREALKEAE--KSLVKAEIPIGCVIVKEGKIIGRGHNAREELNQAIMHAEIMAINEANV 68 Query: 66 EARG-----ATAYVTLEPC 79 + +VT+EPC Sbjct: 69 HEGNWRLLETSLFVTIEPC 87 >gi|257456686|ref|ZP_05621876.1| dCMP deaminase [Treponema vincentii ATCC 35580] gi|257445879|gb|EEV20932.1| dCMP deaminase [Treponema vincentii ATCC 35580] Length = 163 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%) Query: 54 HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A + GAT Y + PC CA II CGI+RV+ + Sbjct: 84 HAEQNAICQAAKRGISIDGATLYCKMTPCR------TCAMLIINCGIKRVIA---EKRYH 134 Query: 111 VSGRGLQWLSQKGIIVDRMMES 132 S + Q G+I++ + ++ Sbjct: 135 DSADSIAMFKQAGVILEHLNDT 156 >gi|88604201|ref|YP_504379.1| CMP/dCMP deaminase, zinc-binding [Methanospirillum hungatei JF-1] gi|88189663|gb|ABD42660.1| CMP/dCMP deaminase, zinc-binding protein [Methanospirillum hungatei JF-1] Length = 274 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 14/103 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALE 61 D FM AA++ + G + ++V+DG++IGRG V HAE+ L+ Sbjct: 130 LDDPFMEAAIQEAE--KGKEEGGIPIGSVLVRDGVIIGRGHNRRVQNNDPMVHAEIDCLQ 187 Query: 62 EAGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 AG + Y TL PC CA +++ I RV+V Sbjct: 188 NAGRIGSYQDCILYSTLMPCFL------CAGAVVQFHIPRVIV 224 >gi|299542082|ref|ZP_07052398.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1] gi|298725397|gb|EFI66045.1| hypothetical protein BFZC1_24048 [Lysinibacillus fusiformis ZC1] Length = 171 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 17/110 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 M + D FM AL ++ L P + ++V +G +I R T HAE Sbjct: 1 MDIFDADRLFMKQALEEAQ-QAALLGEVP-IGAVLVYEGKIIARAHNLRETTQNATTHAE 58 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + ++EA ++ T YVTLEPC P CA I++ + RVV Sbjct: 59 LLVIQEACKKIGSWRLEDTTLYVTLEPC------PMCAGAILQSRVPRVV 102 >gi|224476697|ref|YP_002634303.1| putative deaminase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421304|emb|CAL28118.1| putative deaminase similar to ComEB [Staphylococcus carnosus subsp. carnosus TM300] Length = 153 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 48/122 (39%), Gaps = 31/122 (25%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAY---------GGCP----------HAEVQAL---EE 62 T T SV IVKD +I G GC HAE+ AL + Sbjct: 22 TCTRLSVGATIVKDNRIIAGGYNGSVAGEVHCIDEGCLMEDNHCIRTIHAEMNALLQCTK 81 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G GAT YVT PC C + II+ GI+R+ D + + +Q L Q Sbjct: 82 QGVSTEGATIYVTHFPC------LNCTKSIIQAGIKRIYYAQDYHNHEYA---IQLLKQS 132 Query: 123 GI 124 GI Sbjct: 133 GI 134 >gi|325295641|ref|YP_004282155.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066089|gb|ADY74096.1| CMP/dCMP deaminase zinc-binding protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 155 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 33/112 (29%), Positives = 47/112 (41%), Gaps = 17/112 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60 D F+ AL+ ++ L + +IVKD +I R HAE+ A+ Sbjct: 2 ELDHLFLLEALKEAKKAFKLGEV--PIGAIIVKDRKIISRAFNRKEFLQDPTAHAELLAI 59 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 +EA + G T Y T+EPC C II+ I R+V V DP Sbjct: 60 KEASRKLNSWRLNGCTLYSTVEPCIM------CCGVIIQSRIDRLVYSVPDP 105 >gi|224122016|ref|XP_002318729.1| predicted protein [Populus trichocarpa] gi|222859402|gb|EEE96949.1| predicted protein [Populus trichocarpa] Length = 225 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 40/130 (30%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYG-GCP------- 53 S+D FM+ AL + S +P+ ACL+ K+GI++G G + GC Sbjct: 68 SWDDYFMAIALLSAE-----RSKDPNRQVGACLVSKNGIILGIGYNGFPRGCSDDDLPWA 122 Query: 54 -----------------HAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 HAEV A L A G YVT+ PC+ CA+ II Sbjct: 123 KKSKSGDPLETKYPYVCHAEVNAILNTNHASAVGQRLYVTMFPCNE------CAKIIILS 176 Query: 96 GIRRVVVCVD 105 G+ V+ ++ Sbjct: 177 GVSEVIYFIE 186 >gi|254442522|ref|ZP_05055998.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] gi|198256830|gb|EDY81138.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] Length = 177 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 24/126 (19%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNP---------SVACLIVKDGIVIG----RGVTA 48 P F+ R+ SA R R+++ L + +I G V+G R + Sbjct: 9 PDCPFEKRYPSALQRNDRYYMELAYNQAIEAWRENEVPIGAVIEYKGEVVGSAHNRVEST 68 Query: 49 YGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ +A + AT YVT EPC P C+ + ++RVV Sbjct: 69 NDPTAHAEMLAITQASSAIKNWRLNEATLYVTKEPC------PMCSGASMMSRLKRVVYA 122 Query: 104 VDDPDV 109 V DP + Sbjct: 123 VPDPKM 128 >gi|150388180|ref|YP_001318229.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens QYMF] gi|149948042|gb|ABR46570.1| CMP/dCMP deaminase, zinc-binding [Alkaliphilus metalliredigens QYMF] Length = 146 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 9/58 (15%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE A+ +A G E +G T YVTL+PC CA+ +I G++R+V PD Sbjct: 77 HAEQNAIIQAAYHGVEIQGTTLYVTLQPCV------LCAKMLINAGVKRLVFKGQYPD 128 >gi|221480648|gb|EEE19095.1| deoxycytidylate deaminase, putative [Toxoplasma gondii GT1] gi|221501404|gb|EEE27182.1| deoxycytidylate deaminase, putative [Toxoplasma gondii VEG] Length = 180 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 40/81 (49%), Gaps = 10/81 (12%) Query: 52 CPHAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 C HAE AL EAG + A T YVT PC CA+ +++ IR VV + D Sbjct: 94 CIHAEANALLEAGRDRAMNGTLYVTCLPCLG------CAKLVVQSAIRTVVYAEEYDD-- 145 Query: 111 VSGRGLQWLSQKGIIVDRMME 131 SG L L++ G+ V R + Sbjct: 146 KSG-ALDLLNRMGVSVRRFAD 165 >gi|218706062|ref|YP_002413581.1| tRNA -specific adenosine deaminase [Escherichia coli UMN026] gi|293406001|ref|ZP_06649993.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412] gi|298381801|ref|ZP_06991400.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302] gi|300898326|ref|ZP_07116674.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 198-1] gi|218433159|emb|CAR14055.1| tRNA-specific adenosine deaminase [Escherichia coli UMN026] gi|284922509|emb|CBG35596.1| tRNA-specific adenosine deaminase [Escherichia coli 042] gi|291428209|gb|EFF01236.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1412] gi|298279243|gb|EFI20757.1| tRNA-specific adenosine deaminase [Escherichia coli FVEC1302] gi|300357988|gb|EFJ73858.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 198-1] Length = 178 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|154508436|ref|ZP_02044078.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC 17982] gi|153798070|gb|EDN80490.1| hypothetical protein ACTODO_00935 [Actinomyces odontolyticus ATCC 17982] Length = 435 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 15/91 (16%) Query: 32 ACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSHY 82 A ++ ++G +IGRG + HAE+ AL EAG G T VTLEPC+ Sbjct: 21 AVVVDENGRIIGRGWNCREANHDPAGHAEIVALREAGRSRGTWRLTGCTLIVTLEPCTM- 79 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA I+ I RVV DP +G Sbjct: 80 -----CAGAILASRIDRVVFGAWDPKAGAAG 105 >gi|146321900|ref|YP_001201611.1| cytosine/adenosine deaminase [Streptococcus suis 98HAH33] gi|145692706|gb|ABP93211.1| Cytosine/adenosine deaminase [Streptococcus suis 98HAH33] Length = 141 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 9/55 (16%) Query: 34 LIVKDGIVIGRGVTAY----GGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 +IVKDG +IGRG A HAEV A++EA +T +VT+EPC Sbjct: 1 MIVKDGQIIGRGHNAREELNQAIMHAEVMAIQEANNVEGNWRLLDSTLFVTIEPC 55 >gi|258593876|emb|CBE70217.1| Cytosine deaminase (Cytosine aminohydrolase) [NC10 bacterium 'Dutch sediment'] Length = 154 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 14/100 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI--GRGVTAYGGCP--HAEVQALEEAG 64 RF+ AA F + + ++V++ VI G G P H E+ L +AG Sbjct: 10 RFIRAA--FEQARKSYNEGGLPIGAVMVENSTVIAVGHNRRVQDGDPTAHGEMDCLRQAG 67 Query: 65 EEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 R G T Y TL PC C+ +++ GI+RVV+ Sbjct: 68 RRPRYDGITLYTTLSPCMM------CSGTVLQFGIKRVVI 101 >gi|218929978|ref|YP_002347853.1| tRNA-specific adenosine deaminase [Yersinia pestis CO92] gi|115348589|emb|CAL21531.1| putative zinc-binding protein [Yersinia pestis CO92] Length = 159 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 11/76 (14%) Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ AL + G+ + AT YVTLEPC CA ++ IRR+V +D Sbjct: 46 HAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM------CAGAMVHSRIRRLVYGANDVK 99 Query: 109 VRVSGRGLQWLSQKGI 124 +G + L G+ Sbjct: 100 TGAAGSLVDILRHPGM 115 >gi|255067649|ref|ZP_05319504.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256] gi|255048123|gb|EET43587.1| tRNA-specific adenosine deaminase [Neisseria sicca ATCC 29256] Length = 243 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P SS FM AAL + + V ++V + +I V+ + HAE Sbjct: 89 FPTSSEMETFMRAALTQAEQSASIGEI--PVGAVVVSNNQIIAAAHNTCVSDHDISRHAE 146 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 ++AL AG + G Y+TLEPC+ CA II+ +RRV+ +P Sbjct: 147 IRALAAAGAALQNYRLDGCDLYITLEPCAM------CASAIIQARVRRVIYGAAEPKTGA 200 Query: 112 SGRGLQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142 +G + L++ I ++E E K L A+ Sbjct: 201 AGSVVNLFANPLLNKHTAIKGGILEDECKAVLQAFF 236 >gi|170767485|ref|ZP_02901938.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627] gi|170123819|gb|EDS92750.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627] Length = 178 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|24113886|ref|NP_708396.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301] gi|30063946|ref|NP_838117.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T] gi|82545011|ref|YP_408958.1| tRNA-specific adenosine deaminase [Shigella boydii Sb227] gi|89109365|ref|AP_003145.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. W3110] gi|157162036|ref|YP_001459354.1| tRNA-specific adenosine deaminase [Escherichia coli HS] gi|187730453|ref|YP_001881338.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94] gi|188496019|ref|ZP_03003289.1| tRNA-specific adenosine deaminase [Escherichia coli 53638] gi|209920038|ref|YP_002294122.1| tRNA-specific adenosine deaminase [Escherichia coli SE11] gi|218547914|ref|YP_002381705.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 35469] gi|218555084|ref|YP_002387997.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1] gi|218696186|ref|YP_002403853.1| tRNA-specific adenosine deaminase [Escherichia coli 55989] gi|254162534|ref|YP_003045642.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606] gi|256017292|ref|ZP_05431157.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|293410974|ref|ZP_06654550.1| tRNA-specific adenosine deaminase [Escherichia coli B354] gi|300817664|ref|ZP_07097879.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 107-1] gi|300820763|ref|ZP_07100913.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 119-7] gi|300904258|ref|ZP_07122117.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 84-1] gi|300920727|ref|ZP_07137133.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 115-1] gi|300927064|ref|ZP_07142816.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 182-1] gi|300927685|ref|ZP_07143253.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 187-1] gi|300951723|ref|ZP_07165542.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 116-1] gi|300958800|ref|ZP_07170912.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 175-1] gi|301022068|ref|ZP_07185995.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 196-1] gi|301024846|ref|ZP_07188483.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 69-1] gi|301302925|ref|ZP_07209053.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 124-1] gi|301330339|ref|ZP_07222986.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 78-1] gi|301648323|ref|ZP_07248063.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 146-1] gi|312973195|ref|ZP_07787367.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70] gi|331643182|ref|ZP_08344317.1| tRNA-specific adenosine deaminase [Escherichia coli H736] gi|331664126|ref|ZP_08365036.1| tRNA-specific adenosine deaminase [Escherichia coli TA143] gi|331669308|ref|ZP_08370156.1| tRNA-specific adenosine deaminase [Escherichia coli TA271] gi|331678554|ref|ZP_08379229.1| tRNA-specific adenosine deaminase [Escherichia coli H591] gi|331684208|ref|ZP_08384804.1| tRNA-specific adenosine deaminase [Escherichia coli H299] gi|332278286|ref|ZP_08390699.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|296183|emb|CAA51064.1| unnamed protein product [Escherichia coli] gi|987637|dbj|BAA10909.1| YFHC-ECOLI protein [Escherichia coli K-12] gi|1033148|gb|AAA79821.1| alternate name yfhC; orf178 of GenBank Accession Number X72336 [Escherichia coli str. K-12 substr. MG1655] gi|24052985|gb|AAN44103.1| putative deaminase [Shigella flexneri 2a str. 301] gi|30042202|gb|AAP17927.1| putative deaminase [Shigella flexneri 2a str. 2457T] gi|81246422|gb|ABB67130.1| putative deaminase [Shigella boydii Sb227] gi|85675450|dbj|BAE76735.1| tRNA-specific adenosine deaminase [Escherichia coli str. K12 substr. W3110] gi|157067716|gb|ABV06971.1| tRNA-specific adenosine deaminase [Escherichia coli HS] gi|187427445|gb|ACD06719.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94] gi|188491218|gb|EDU66321.1| tRNA-specific adenosine deaminase [Escherichia coli 53638] gi|209913297|dbj|BAG78371.1| putative deaminase [Escherichia coli SE11] gi|218352918|emb|CAU98717.1| tRNA-specific adenosine deaminase [Escherichia coli 55989] gi|218355455|emb|CAQ88064.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 35469] gi|218361852|emb|CAQ99452.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1] gi|253974435|gb|ACT40106.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606] gi|253978602|gb|ACT44272.1| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)] gi|281601959|gb|ADA74943.1| tRNA-specific adenosine deaminase [Shigella flexneri 2002017] gi|291471442|gb|EFF13926.1| tRNA-specific adenosine deaminase [Escherichia coli B354] gi|299881373|gb|EFI89584.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 196-1] gi|300314548|gb|EFJ64332.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 175-1] gi|300396377|gb|EFJ79915.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 69-1] gi|300403791|gb|EFJ87329.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 84-1] gi|300412298|gb|EFJ95608.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 115-1] gi|300416948|gb|EFK00259.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 182-1] gi|300449007|gb|EFK12627.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 116-1] gi|300464238|gb|EFK27731.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 187-1] gi|300526516|gb|EFK47585.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 119-7] gi|300529652|gb|EFK50714.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 107-1] gi|300841860|gb|EFK69620.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 124-1] gi|300843673|gb|EFK71433.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 78-1] gi|301073599|gb|EFK88405.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 146-1] gi|309702891|emb|CBJ02222.1| tRNA-specific adenosine deaminase [Escherichia coli ETEC H10407] gi|310331790|gb|EFP99025.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70] gi|315137183|dbj|BAJ44342.1| tRNA-specific adenosine deaminase [Escherichia coli DH1] gi|315256586|gb|EFU36554.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 85-1] gi|315615821|gb|EFU96453.1| tRNA-specific adenosine deaminase [Escherichia coli 3431] gi|320196395|gb|EFW71019.1| tRNA-specific adenosine-34 deaminase [Escherichia coli WV_060327] gi|323156217|gb|EFZ42376.1| tRNA-specific adenosine deaminase [Escherichia coli EPECa14] gi|323170158|gb|EFZ55811.1| tRNA-specific adenosine deaminase [Escherichia coli LT-68] gi|323177311|gb|EFZ62899.1| tRNA-specific adenosine deaminase [Escherichia coli 1180] gi|323184561|gb|EFZ69935.1| tRNA-specific adenosine deaminase [Escherichia coli 1357] gi|324020017|gb|EGB89236.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 117-3] gi|325496361|gb|EGC94220.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ECD227] gi|331039980|gb|EGI12200.1| tRNA-specific adenosine deaminase [Escherichia coli H736] gi|331059925|gb|EGI31902.1| tRNA-specific adenosine deaminase [Escherichia coli TA143] gi|331064502|gb|EGI36413.1| tRNA-specific adenosine deaminase [Escherichia coli TA271] gi|331075014|gb|EGI46334.1| tRNA-specific adenosine deaminase [Escherichia coli H591] gi|331079160|gb|EGI50362.1| tRNA-specific adenosine deaminase [Escherichia coli H299] gi|332100638|gb|EGJ03984.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|333000545|gb|EGK20124.1| tRNA-specific adenosine deaminase [Shigella flexneri VA-6] Length = 178 Score = 37.0 bits (84), Expect = 5.2, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|290581189|ref|YP_003485581.1| putative deaminase [Streptococcus mutans NN2025] gi|254998088|dbj|BAH88689.1| putative deaminase [Streptococcus mutans NN2025] Length = 156 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEAGE 65 FM AL+ ++ + L + C+IVKDG +IG G A HAE+ A+ +A Sbjct: 12 FMGEALKEAQ--LSLQKEEIPIGCVIVKDGQIIGCGHNAREEENLAIMHAEIMAINQANR 69 Query: 66 EARG-----ATAYVTLEPC 79 T +VT+EPC Sbjct: 70 TQESWRLLDCTLFVTIEPC 88 >gi|15803084|ref|NP_289115.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 EDL933] gi|15832679|ref|NP_311452.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. Sakai] gi|82777934|ref|YP_404283.1| tRNA-specific adenosine deaminase [Shigella dysenteriae Sd197] gi|91211884|ref|YP_541870.1| tRNA-specific adenosine deaminase [Escherichia coli UTI89] gi|110642721|ref|YP_670451.1| tRNA-specific adenosine deaminase [Escherichia coli 536] gi|117624781|ref|YP_853694.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1] gi|187775816|ref|ZP_02798525.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4196] gi|189009982|ref|ZP_02803540.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4076] gi|189405037|ref|ZP_02812923.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC869] gi|189405736|ref|ZP_02823945.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC508] gi|191172647|ref|ZP_03034186.1| tRNA-specific adenosine deaminase [Escherichia coli F11] gi|194432153|ref|ZP_03064442.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012] gi|218559479|ref|YP_002392392.1| tRNA-specific adenosine deaminase [Escherichia coli S88] gi|218690674|ref|YP_002398886.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a] gi|237705067|ref|ZP_04535548.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA] gi|291283784|ref|YP_003500602.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str. CB9615] gi|293415828|ref|ZP_06658471.1| tRNA-specific adenosine deaminase [Escherichia coli B185] gi|300935691|ref|ZP_07150661.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 21-1] gi|300974171|ref|ZP_07172489.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 200-1] gi|309784689|ref|ZP_07679322.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617] gi|331648252|ref|ZP_08349342.1| tRNA-specific adenosine deaminase [Escherichia coli M605] gi|331653994|ref|ZP_08354995.1| tRNA-specific adenosine deaminase [Escherichia coli M718] gi|331658703|ref|ZP_08359647.1| tRNA-specific adenosine deaminase [Escherichia coli TA206] gi|12516972|gb|AAG57673.1|AE005486_4 putative deaminase [Escherichia coli O157:H7 str. EDL933] gi|13362896|dbj|BAB36848.1| putative deaminase [Escherichia coli O157:H7 str. Sakai] gi|81242082|gb|ABB62792.1| putative deaminase [Shigella dysenteriae Sd197] gi|91073458|gb|ABE08339.1| putative deaminase [Escherichia coli UTI89] gi|110344313|gb|ABG70550.1| hypothetical protein YfhC [Escherichia coli 536] gi|115513905|gb|ABJ01980.1| tRNA-specific adenosine deaminase [Escherichia coli APEC O1] gi|187770595|gb|EDU34439.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4196] gi|189003519|gb|EDU72505.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4076] gi|189372298|gb|EDU90714.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC869] gi|189378592|gb|EDU97008.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC508] gi|190907120|gb|EDV66720.1| tRNA-specific adenosine deaminase [Escherichia coli F11] gi|194419682|gb|EDX35762.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1012] gi|209762958|gb|ACI79791.1| putative deaminase [Escherichia coli] gi|209762960|gb|ACI79792.1| putative deaminase [Escherichia coli] gi|209762962|gb|ACI79793.1| putative deaminase [Escherichia coli] gi|209762964|gb|ACI79794.1| putative deaminase [Escherichia coli] gi|209762966|gb|ACI79795.1| putative deaminase [Escherichia coli] gi|218366248|emb|CAR03995.1| tRNA-specific adenosine deaminase [Escherichia coli S88] gi|218428238|emb|CAR09014.1| tRNA-specific adenosine deaminase [Escherichia coli ED1a] gi|222034264|emb|CAP77005.1| tRNA-specific adenosine deaminase [Escherichia coli LF82] gi|226901433|gb|EEH87692.1| tRNA-specific adenosine deaminase [Escherichia sp. 3_2_53FAA] gi|290763657|gb|ADD57618.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str. CB9615] gi|291433476|gb|EFF06455.1| tRNA-specific adenosine deaminase [Escherichia coli B185] gi|294489520|gb|ADE88276.1| tRNA-specific adenosine deaminase [Escherichia coli IHE3034] gi|300308910|gb|EFJ63430.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 200-1] gi|300459125|gb|EFK22618.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 21-1] gi|307625893|gb|ADN70197.1| tRNA-specific adenosine deaminase [Escherichia coli UM146] gi|308927059|gb|EFP72533.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 1617] gi|315288035|gb|EFU47437.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 110-3] gi|315300515|gb|EFU59744.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 16-3] gi|323188326|gb|EFZ73618.1| tRNA-specific adenosine deaminase [Escherichia coli RN587/1] gi|323949213|gb|EGB45104.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli H252] gi|324013577|gb|EGB82796.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 60-1] gi|326345048|gb|EGD68792.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str. 1044] gi|327252269|gb|EGE63941.1| tRNA-specific adenosine deaminase [Escherichia coli STEC_7v] gi|330912330|gb|EGH40840.1| tRNA-specific adenosine-34 deaminase [Escherichia coli AA86] gi|331043112|gb|EGI15252.1| tRNA-specific adenosine deaminase [Escherichia coli M605] gi|331048843|gb|EGI20919.1| tRNA-specific adenosine deaminase [Escherichia coli M718] gi|331054368|gb|EGI26395.1| tRNA-specific adenosine deaminase [Escherichia coli TA206] Length = 178 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|332670626|ref|YP_004453634.1| bifunctional deaminase-reductase domain-containing protein [Cellulomonas fimi ATCC 484] gi|332339664|gb|AEE46247.1| bifunctional deaminase-reductase domain protein [Cellulomonas fimi ATCC 484] Length = 274 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 20/186 (10%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH----LLRAQSDAILVGIGTVLADDPE 206 H+ + S D A G+ +G I+ H +LRA +D +LVG GTV A+ Sbjct: 52 HVRANMVSSLDG----AATGADRRSGSINDPADHRVFRVLRALADVVLVGGGTVRAEHYS 107 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSL--DSKIIKTALL---APVIIVTENDDPVLALAFR 261 GL+E + P +L++ + ALL P I++T + P L Sbjct: 108 ALEVPAGLEEAR-RALGRSPEIELAVVTAGADLPGALLDGPRPPIVITTSQSPGLDQVRD 166 Query: 262 K---KNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + + + + D DL+ L L RG++ +L EGG ++ + + LVD + Sbjct: 167 RVGPERVIVTESDTPGVVDLRVALAALGARGLSHVLAEGGPSLLGQLLEADLVDELCATS 226 Query: 316 SQIVIG 321 S +++G Sbjct: 227 SPVLVG 232 >gi|315647606|ref|ZP_07900708.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] gi|315277045|gb|EFU40386.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] Length = 159 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 9/55 (16%) Query: 34 LIVKDGIVIGRG---VTAYGG-CPHAEVQALEEA-----GEEARGATAYVTLEPC 79 ++VK+G VIGRG VTA HAEVQA+ EA + +G T Y + EPC Sbjct: 32 IVVKEGKVIGRGRNLVTALNDPTAHAEVQAIREACLHMEDFQLKGCTIYTSCEPC 86 >gi|218701072|ref|YP_002408701.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39] gi|218371058|emb|CAR18885.1| tRNA-specific adenosine deaminase [Escherichia coli IAI39] Length = 178 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|26248923|ref|NP_754963.1| tRNA-specific adenosine deaminase [Escherichia coli CFT073] gi|227887593|ref|ZP_04005398.1| tRNA-specific adenosine deaminase [Escherichia coli 83972] gi|300982262|ref|ZP_07175973.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 45-1] gi|301047197|ref|ZP_07194289.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 185-1] gi|312965474|ref|ZP_07779706.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75] gi|26109329|gb|AAN81531.1|AE016764_213 Hypothetical protein yfhC [Escherichia coli CFT073] gi|227835943|gb|EEJ46409.1| tRNA-specific adenosine deaminase [Escherichia coli 83972] gi|300300874|gb|EFJ57259.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 185-1] gi|300408816|gb|EFJ92354.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 45-1] gi|307554578|gb|ADN47353.1| tRNA-specific adenosine deaminase [Escherichia coli ABU 83972] gi|312289894|gb|EFR17782.1| tRNA-specific adenosine deaminase [Escherichia coli 2362-75] gi|315292466|gb|EFU51818.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 153-1] gi|324008467|gb|EGB77686.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 57-2] Length = 178 Score = 37.0 bits (84), Expect = 5.4, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|74313082|ref|YP_311501.1| tRNA-specific adenosine deaminase [Shigella sonnei Ss046] gi|73856559|gb|AAZ89266.1| putative deaminase [Shigella sonnei Ss046] gi|323169455|gb|EFZ55128.1| tRNA-specific adenosine deaminase [Shigella sonnei 53G] Length = 178 Score = 36.6 bits (83), Expect = 5.5, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|329851126|ref|ZP_08265883.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Asticcacaulis biprosthecum C19] gi|328839972|gb|EGF89544.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Asticcacaulis biprosthecum C19] Length = 154 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 11/75 (14%) Query: 52 CPHAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 C HAE+ AL AG+ G YVTLEPC+ CA I I RV+ D Sbjct: 54 CAHAEILALRAAGQAIGNYRLGGLWLYVTLEPCAM------CAGAISHARIARVIYGAPD 107 Query: 107 PDVRVSGRGLQWLSQ 121 P G ++ +Q Sbjct: 108 PKGGAVAHGPKFFAQ 122 >gi|291336300|gb|ADD95862.1| hypothetical protein [uncultured organism MedDCM-OCT-S12-C54] Length = 212 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 39/117 (33%), Positives = 50/117 (42%), Gaps = 27/117 (23%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--------KD-GIVIGRGVTAYGGC 52 P SS D +M A S+ ++ V C IV KD G VI GV + Sbjct: 30 PASSADENYMDLAFLLSQ----SSTATGRVGCAIVSGVRDGAAKDQGSVIVCGVNSGLYS 85 Query: 53 P-----HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 P HAE A+ E+ G RGAT YV+ PC+H C + GI R+V Sbjct: 86 PLKADCHAEANAIAESAASGWPLRGATCYVSKPPCNH------CFSLLAVSGIARIV 136 >gi|254281607|ref|ZP_04956575.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B] gi|219677810|gb|EED34159.1| tRNA-specific adenosine deaminase [gamma proteobacterium NOR51-B] Length = 164 Score = 36.6 bits (83), Expect = 5.6, Method: Compositional matrix adjust. Identities = 36/113 (31%), Positives = 48/113 (42%), Gaps = 17/113 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGR-GVTAYGGC---PHAEVQA 59 S FD MS AL + + V ++V DG V+ G G C HAE+ A Sbjct: 5 SDFDREMMSLALE--KAAMAAAQGEVPVGAVVVMDGKVVATAGNGQIGDCDPTAHAEILA 62 Query: 60 LEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 L +A R GAT Y TLEPC+ C ++ I R+V +P Sbjct: 63 LRDAARAIRNYRLAGATLYATLEPCTM------CCGALVHARIGRLVYGALEP 109 >gi|311897119|dbj|BAJ29527.1| putative deaminase [Kitasatospora setae KM-6054] Length = 179 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 36/98 (36%), Positives = 44/98 (44%), Gaps = 15/98 (15%) Query: 25 TSTNPSVACLIVKDGIVIGRG--VTAYGGCP--HAEVQALEEAGEEA-----RGATAYVT 75 T P A ++ DG V+GRG V G P HAEV A+ A E G T VT Sbjct: 50 TGDVPVGAFVLGPDGTVLGRGHNVREAVGDPTGHAEVVAIRAAAAEVGEWRLSGCTLVVT 109 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 LEPC+ CA I+ + RVV DP +G Sbjct: 110 LEPCTM------CAGAIVLSRLARVVFGAYDPKAGAAG 141 >gi|163792400|ref|ZP_02186377.1| putative nucleotide deaminase [alpha proteobacterium BAL199] gi|159182105|gb|EDP66614.1| putative nucleotide deaminase [alpha proteobacterium BAL199] Length = 156 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 16/125 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D + + A+ S+ + + P ++V+DG+++G G +T + HAEV A+ Sbjct: 3 DEKHLRRAIELSQGNAEAATGGP-FGAVVVRDGMIVGEGANRVITDFDPTAHAEVVAIRA 61 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + GA Y + EPC P C I+ I R+V D G Sbjct: 62 ACRQLGTYDLSGAVIYTSCEPC------PMCLAAILWARIDRMVYANTRADAAAIGFDDA 115 Query: 118 WLSQK 122 W ++ Sbjct: 116 WFYEQ 120 >gi|42565719|ref|NP_190423.2| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|91806546|gb|ABE66000.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|332644907|gb|AEE78428.1| dCMP deaminase [Arabidopsis thaliana] Length = 232 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++G+++G G + GC HAEV A L Sbjct: 92 ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ I++ G+ V+ V+ Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185 >gi|281179608|dbj|BAI55938.1| putative deaminase [Escherichia coli SE15] Length = 178 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 41 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 100 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 137 >gi|210631978|ref|ZP_03297143.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279] gi|210159780|gb|EEA90751.1| hypothetical protein COLSTE_01034 [Collinsella stercoris DSM 13279] Length = 647 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 35/112 (31%), Positives = 45/112 (40%), Gaps = 17/112 (15%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60 + D RFMS AL +R + + ++V +G VI R HAE A+ Sbjct: 6 AVDERFMSMALEEARAAASIGEV--PIGAVVVHEGRVIARAHNRREADEDPSAHAEFAAM 63 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 EA G T YVTLEPC CA ++ I R V DP Sbjct: 64 MEASRALGRWRLTGCTVYVTLEPCLM------CAGLMVNARIDRCVFGAYDP 109 >gi|170023497|ref|YP_001720002.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis YPIII] gi|169750031|gb|ACA67549.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis YPIII] Length = 187 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 47 VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143 >gi|149408294|ref|YP_001294573.1| hypothetical protein ORF065 [Pseudomonas phage M6] Length = 153 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 10/78 (12%) Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 HAE+ AL G A G T Y + PC P C + + G++RV P + +G Sbjct: 72 HAEINALNFLGSPATGFTLYTSF-PC-----CPNCMEAAGKAGVKRVAF----PGIDYAG 121 Query: 114 RGLQWLSQKGIIVDRMME 131 R W+++ +D +E Sbjct: 122 RDPGWVAEWNQRIDETLE 139 >gi|45442315|ref|NP_993854.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Microtus str. 91001] gi|108808356|ref|YP_652272.1| tRNA-specific adenosine deaminase [Yersinia pestis Antiqua] gi|108811379|ref|YP_647146.1| tRNA-specific adenosine deaminase [Yersinia pestis Nepal516] gi|145599538|ref|YP_001163614.1| tRNA-specific adenosine deaminase [Yersinia pestis Pestoides F] gi|149365378|ref|ZP_01887413.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125] gi|229838506|ref|ZP_04458665.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895510|ref|ZP_04510681.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A] gi|229899076|ref|ZP_04514220.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar Orientalis str. India 195] gi|229901629|ref|ZP_04516751.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516] gi|45437179|gb|AAS62731.1| putative zinc-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|108775027|gb|ABG17546.1| tRNA-adenosine deaminase [Yersinia pestis Nepal516] gi|108780269|gb|ABG14327.1| tRNA-adenosine deaminase [Yersinia pestis Antiqua] gi|145211234|gb|ABP40641.1| tRNA-adenosine deaminase [Yersinia pestis Pestoides F] gi|149291791|gb|EDM41865.1| tRNA-specific adenosine deaminase [Yersinia pestis CA88-4125] gi|229681558|gb|EEO77652.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Nepal516] gi|229688021|gb|EEO80093.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar Orientalis str. India 195] gi|229694872|gb|EEO84919.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701316|gb|EEO89344.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis Pestoides A] gi|320016065|gb|ADV99636.1| tRNA-specific adenosine-34 deaminase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 187 Score = 36.6 bits (83), Expect = 5.7, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 47 VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143 >gi|321313686|ref|YP_004205973.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5] gi|320019960|gb|ADV94946.1| tRNA specific adenosine deaminase [Bacillus subtilis BSn5] Length = 161 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 P A L+V D I I R T HAE+ ++EA + GAT YVTLEPC Sbjct: 25 PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVMDEACKALGTWRLEGATLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEG 134 P CA ++ + +VV DP SG + L + + +V ++E E Sbjct: 84 ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEEC 137 Query: 135 KIFLHAYL 142 L A+ Sbjct: 138 GGMLSAFF 145 >gi|311070665|ref|YP_003975588.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942] gi|310871182|gb|ADP34657.1| tRNA specific adenosine deaminase [Bacillus atrophaeus 1942] Length = 161 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 33/102 (32%), Positives = 45/102 (44%), Gaps = 14/102 (13%) Query: 29 PSVACLIVKDGIVI---GRGVTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCS 80 P A L++ D IV T HAE+ A++EA GA+ YVTLEPC Sbjct: 25 PIGAVLVMNDDIVARAHNLRETEQRSIAHAEMLAIDEACRTLGTWRLEGASLYVTLEPC- 83 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P CA ++ + RVV DP SG + L ++ Sbjct: 84 -----PMCAGAVVLSRVDRVVFGAFDPKGGCSGTLMNLLQEE 120 >gi|283786173|ref|YP_003366038.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168] gi|282949627|emb|CBG89246.1| tRNA-specific adenosine deaminase [Citrobacter rodentium ICC168] Length = 180 Score = 36.6 bits (83), Expect = 5.8, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 43 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLIDATLYVTLEPCV- 101 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ I RVV D +G + L G+ Sbjct: 102 -----MCAGAMVHSRISRVVFGARDAKTGAAGSLIDVLHHPGM 139 >gi|310722526|ref|YP_003969349.1| Cd dCMP deaminase [Aeromonas phage phiAS5] gi|306021369|gb|ADM79903.1| Cd dCMP deaminase [Aeromonas phage phiAS5] Length = 182 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 9/53 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ G+ GAT Y T+ PC P CA+ I + IR +V C Sbjct: 91 HAEMNAILFAARGGKSIEGATMYCTMAPC------PDCAKMIAQSRIRTLVYC 137 >gi|51597197|ref|YP_071388.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP 32953] gi|186896294|ref|YP_001873406.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis PB1/+] gi|51590479|emb|CAH22119.1| putative zinc-binding protein [Yersinia pseudotuberculosis IP 32953] gi|186699320|gb|ACC89949.1| CMP/dCMP deaminase zinc-binding [Yersinia pseudotuberculosis PB1/+] Length = 187 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 47 VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 106 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 107 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 143 >gi|42521730|ref|NP_967110.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio bacteriovorus HD100] gi|39574260|emb|CAE77764.1| cytidine/deoxycytidylate deaminase family protein [Bdellovibrio bacteriovorus HD100] Length = 155 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 + FM A+ SR ++ + P +IVKDG +IG G ++ HAEV A+ + Sbjct: 2 NKEFMLRAIELSRNNMRAGAGGP-FGAVIVKDGKIIGEGWNKVTSSNDPTAHAEVSAIRD 60 Query: 63 A-----GEEARGATAYVTLEPC 79 A E GA Y + EPC Sbjct: 61 ACSKISNFELAGAEIYTSCEPC 82 >gi|153948638|ref|YP_001400126.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP 31758] gi|152960133|gb|ABS47594.1| tRNA-specific adenosine deaminase [Yersinia pseudotuberculosis IP 31758] Length = 200 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 60 VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 119 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 120 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 156 >gi|297620926|ref|YP_003709063.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU 86-1044] gi|297376227|gb|ADI38057.1| tRNA-specific adenosine deaminase [Waddlia chondrophila WSU 86-1044] Length = 176 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 57/127 (44%), Gaps = 22/127 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ--AL 60 D +M AAL+ W + P V ++VK+G VI RG HAE+ + Sbjct: 19 DETYMLAALK-EAWKAFVKGEVP-VGAILVKEGKVIARGHNQVEMLRDATAHAEMLCITV 76 Query: 61 EEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV-DDPDVRVSGRGL 116 EA E+ GAT Y T+EPCS CA ++ + RV V PD+R G Sbjct: 77 AEAAEDNWRLNGATLYCTIEPCSM------CAGAML---LSRVSTLVWGAPDIRHGANG- 126 Query: 117 QWLSQKG 123 W++ G Sbjct: 127 SWVNLFG 133 >gi|82701254|ref|YP_410820.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Nitrosospira multiformis ATCC 25196] gi|82409319|gb|ABB73428.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Nitrosospira multiformis ATCC 25196] Length = 489 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 19/84 (22%) Query: 45 GVTAYGGCPHAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV- 100 ++ YG HAE++A+ A RG+T Y T PC + CA+ I+ GI +V Sbjct: 329 NISEYGRAVHAEMEAIISAARNGISIRGSTLYSTTYPCHN------CAKHIVAAGISKVR 382 Query: 101 ---------VVCVDDPDVRVSGRG 115 + + + + +GRG Sbjct: 383 YIEPYPKSYAIKLHEDSIEANGRG 406 >gi|148262140|ref|YP_001228846.1| CMP/dCMP deaminase, zinc-binding [Geobacter uraniireducens Rf4] gi|146395640|gb|ABQ24273.1| tRNA-adenosine deaminase [Geobacter uraniireducens Rf4] Length = 176 Score = 36.6 bits (83), Expect = 5.9, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 51/120 (42%), Gaps = 17/120 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 V D +M +A+R + + +IV+DG +I RG G HAE+ Sbjct: 18 VEKDDVWWMGSAIREA--EKAAERGEVPIGAVIVRDGKIISRGYNLREGKQDPAAHAELI 75 Query: 59 ALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A ++ G T YVTLEPC C I+ + +VV DP +G Sbjct: 76 AIRKAAKKLGNWRLAGTTLYVTLEPCIM------CMGAILLARVEKVVFGCYDPKGGAAG 129 >gi|326575668|gb|EGE25591.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis CO72] Length = 181 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 18/118 (15%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQA 59 S D M+ AL ++ G V ++V +G ++G G +T HAE+ A Sbjct: 22 SMHDVEMMNRALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVA 79 Query: 60 LEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A E +G YVTLEPC+ C +I I RVV +P V Sbjct: 80 VRRACETLNNYRLPKGCILYVTLEPCTM------CFGTLIHARISRVVFGAFEPKAGV 131 >gi|116831274|gb|ABK28591.1| unknown [Arabidopsis thaliana] Length = 233 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++G+++G G + GC HAEV A L Sbjct: 92 ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ I++ G+ V+ V+ Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185 >gi|90108580|pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli gi|90108581|pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From Escherichia Coli Length = 168 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 31 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 89 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 90 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 127 >gi|22125207|ref|NP_668630.1| tRNA-specific adenosine deaminase [Yersinia pestis KIM 10] gi|162421541|ref|YP_001607945.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola] gi|165928230|ref|ZP_02224062.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. F1991016] gi|165939213|ref|ZP_02227763.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. IP275] gi|166008235|ref|ZP_02229133.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. E1979001] gi|166212350|ref|ZP_02238385.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. B42003004] gi|167399598|ref|ZP_02305122.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421139|ref|ZP_02312892.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423684|ref|ZP_02315437.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467717|ref|ZP_02332421.1| tRNA-specific adenosine deaminase [Yersinia pestis FV-1] gi|270489818|ref|ZP_06206892.1| cytidine and deoxycytidylate deaminase zinc-binding region [Yersinia pestis KIM D27] gi|294504520|ref|YP_003568582.1| deaminase [Yersinia pestis Z176003] gi|21958073|gb|AAM84881.1|AE013733_2 putative deaminase [Yersinia pestis KIM 10] gi|162354356|gb|ABX88304.1| tRNA-specific adenosine deaminase [Yersinia pestis Angola] gi|165912813|gb|EDR31440.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. IP275] gi|165919737|gb|EDR37070.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992617|gb|EDR44918.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. E1979001] gi|166206281|gb|EDR50761.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960628|gb|EDR56649.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167052102|gb|EDR63510.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057854|gb|EDR67600.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262362488|gb|ACY59209.1| deaminase [Yersinia pestis D106004] gi|262366507|gb|ACY63064.1| deaminase [Yersinia pestis D182038] gi|270338322|gb|EFA49099.1| cytidine and deoxycytidylate deaminase zinc-binding region [Yersinia pestis KIM D27] gi|294354979|gb|ADE65320.1| deaminase [Yersinia pestis Z176003] Length = 200 Score = 36.6 bits (83), Expect = 6.0, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++V VIG G + HAE+ AL + G+ + AT YVTLEPC Sbjct: 60 VGAVLVLGNKVIGEGWNRPIRDNDPTAHAEIMALRQGGQAVQNYRLLDATLYVTLEPCVM 119 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ IRR+V +D +G + L G+ Sbjct: 120 ------CAGAMVHSRIRRLVYGANDVKTGAAGSLVDILRHPGM 156 >gi|238897621|ref|YP_002923300.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465378|gb|ACQ67152.1| CMP/dCMP deaminase; zinc-binding [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 168 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 47/116 (40%), Gaps = 18/116 (15%) Query: 2 PVSSFDARF-MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAE 56 P S D + M AL + S + ++V + IG G V + HAE Sbjct: 9 PDSELDHHYWMRHALSLAE--QAQASGEVPIGAVVVVNNQSIGEGWNQSVMCHDPTAHAE 66 Query: 57 VQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 + AL +AG + AT YVTLEPC C I+ IR +V DP Sbjct: 67 IIALRQAGRHQKNYRLVNATLYVTLEPCMM------CVGAIMHSRIRGLVYGAPDP 116 >gi|62858897|ref|NP_001016265.1| dCMP deaminase [Xenopus (Silurana) tropicalis] gi|89266721|emb|CAJ83844.1| deoxycytidylate deaminase [Xenopus (Silurana) tropicalis] Length = 190 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 11/71 (15%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV- 104 T Y HAE+ A + + + +G T YV L PC+ CA+ +I+ GI+ V+ Sbjct: 88 TKYPYVCHAELNAIMNKNTADVKGCTMYVALFPCNE------CAKLVIQAGIKEVIFMSD 141 Query: 105 ---DDPDVRVS 112 D PD++ + Sbjct: 142 KYHDSPDMKAA 152 >gi|332707760|ref|ZP_08427787.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L] gi|332353463|gb|EGJ32976.1| tRNA-adenosine deaminase [Lyngbya majuscula 3L] Length = 163 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 16/108 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAG 64 ++M+ A+ ++ G P A ++ +G +I G HAE+ AL AG Sbjct: 16 KWMTVAIEIAQ-KAGEAGEVPVGAVIVDNEGKLIATGENRRERDKDPTAHAEILALRAAG 74 Query: 65 EEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 ++ + T YVTLEPC P CA II + +V VDDP Sbjct: 75 QQLQSWHLNHCTLYVTLEPC------PMCAGAIILARLGLLVYGVDDP 116 >gi|237732543|ref|ZP_04563024.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2] gi|226908082|gb|EEH94000.1| tRNA-specific adenosine deaminase [Citrobacter sp. 30_2] Length = 182 Score = 36.6 bits (83), Expect = 6.1, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 47 VGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCV- 105 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ I RVV D +G + L G+ Sbjct: 106 -----MCAGAMVHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 143 >gi|312219914|emb|CBX99856.1| hypothetical protein [Leptosphaeria maculans] Length = 259 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 43/100 (43%), Gaps = 17/100 (17%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE 65 FM A+ + + L S V C+ VKDG +IGRG+ G HAE A+ Sbjct: 62 FMREAIAMAE--LALKSDETPVGCVFVKDGEIIGRGMNETNRTLNGTRHAEFVAIASILS 119 Query: 66 EA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 + YVT+EPC CA + + GI+ V Sbjct: 120 KHPISILNETDLYVTVEPCVM------CASMLRQYGIKAV 153 >gi|146339390|ref|YP_001204438.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium sp. ORS278] gi|146192196|emb|CAL76201.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium sp. ORS278] Length = 239 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%) Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHS 301 V+++TE R + ++ I+ DL ++L IL GV LL+EGG V + Sbjct: 104 VVVLTEAVSDAHLAGLRSEGVSYIFAGATSIDLPRVLDILSRELGVKRLLLEGGGHVNGT 163 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP 326 F+ + LVD + L V G G P Sbjct: 164 FLRAGLVDELNLVLCPAVDGAKGAP 188 >gi|115522956|ref|YP_779867.1| CMP/dCMP deaminase, zinc-binding [Rhodopseudomonas palustris BisA53] gi|115516903|gb|ABJ04887.1| tRNA-adenosine deaminase [Rhodopseudomonas palustris BisA53] Length = 148 Score = 36.6 bits (83), Expect = 6.3, Method: Compositional matrix adjust. Identities = 31/100 (31%), Positives = 44/100 (44%), Gaps = 15/100 (15%) Query: 31 VACLIVKDGIVIG----RGVTAYGGCPHAEVQALEEAG-----EEARGATAYVTLEPCSH 81 + C+IV+DG VI R ++ HAE+ A+ +A E YVTLEPC+ Sbjct: 25 IGCVIVRDGEVIATAHNRTLSDRDPTAHAEILAIRQAAASLGSERLVDCDLYVTLEPCTM 84 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 CA I IRR+ DP G ++ +Q Sbjct: 85 ------CAGAISLARIRRLYYGASDPKGGAVESGARFFAQ 118 >gi|291085019|ref|ZP_06351792.2| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220] gi|291071670|gb|EFE09779.1| tRNA-specific adenosine deaminase [Citrobacter youngae ATCC 29220] Length = 154 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 19 VGAVLVHNNRVIGEGWNRPIGHHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCV- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA ++ I RVV D +G + L G+ Sbjct: 78 -----MCAGAMVHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 115 >gi|86608124|ref|YP_476886.1| cytidine and deoxycytidylate deaminase family protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|86556666|gb|ABD01623.1| cytidine and deoxycytidylate deaminase family protein [Synechococcus sp. JA-2-3B'a(2-13)] Length = 171 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ AL +AG+ + +G YVTLEPC P CA I + + +V+ DDP Sbjct: 66 HAEILALRQAGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPK 119 Query: 109 V 109 Sbjct: 120 A 120 >gi|312262684|gb|ADQ52979.1| Cd dCMP deaminase [Aeromonas phage PX29] Length = 182 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 9/55 (16%) Query: 54 HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 HAE+ A+ +G+ GAT Y T+ PC P CA+ I + I+ +V C D Sbjct: 91 HAEMNAILFAANSGKPIEGATMYCTMAPC------PECAKTIAQAKIKTLVYCED 139 >gi|303289711|ref|XP_003064143.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Micromonas pusilla CCMP1545] gi|226454459|gb|EEH51765.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Micromonas pusilla CCMP1545] Length = 371 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%) Query: 47 TAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 T Y HAE+ A + + + GAT YVT+ PC+ C++ II+ GI VV Sbjct: 199 TKYAYVCHAEMNAIMNKNSQSLNGATMYVTMYPCNE------CSKLIIQSGITEVV 248 >gi|88803350|ref|ZP_01118876.1| guanine deaminase [Polaribacter irgensii 23-P] gi|88780916|gb|EAR12095.1| guanine deaminase [Polaribacter irgensii 23-P] Length = 157 Score = 36.6 bits (83), Expect = 6.4, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 10/80 (12%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 FMSAA++ + + P C+IVKDG +IG G + HAEV A+ +A Sbjct: 6 EFMSAAVKAALKGMNNNEGGP-FGCIIVKDGAIIGSGNNKVTSTNDPTAHAEVTAIRDAC 64 Query: 65 E-----EARGATAYVTLEPC 79 + + G Y + EPC Sbjct: 65 KNIGSFQLDGCIIYTSCEPC 84 >gi|325273807|ref|ZP_08139995.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51] gi|324101066|gb|EGB98724.1| CMP/dCMP deaminase zinc-binding protein [Pseudomonas sp. TJI-51] Length = 159 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 57/139 (41%), Gaps = 18/139 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEV--- 57 S D +M AL + L V ++V+ G VIG+G + HAE+ Sbjct: 9 SRDQEYMRLALSLAAEGAALGEV--PVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66 Query: 58 --QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A + G+T YVTLEPCS CA I+ + RVV +P + Sbjct: 67 RAAAKAASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVMRVVFGALEPKAGIVQSQ 120 Query: 116 LQWLSQKGIIVDRMMESEG 134 Q+ Q G + R+M G Sbjct: 121 GQFFGQ-GFLNHRVMVEGG 138 >gi|145698301|ref|NP_417054.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. MG1655] gi|170082169|ref|YP_001731489.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. DH10B] gi|170682913|ref|YP_001744748.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5] gi|191167978|ref|ZP_03029780.1| tRNA-specific adenosine deaminase [Escherichia coli B7A] gi|194437606|ref|ZP_03069702.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1] gi|238901724|ref|YP_002927520.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952] gi|253772543|ref|YP_003035374.1| tRNA-specific adenosine deaminase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|256021756|ref|ZP_05435621.1| tRNA-specific adenosine deaminase [Escherichia sp. 4_1_40B] gi|260856653|ref|YP_003230544.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str. 11368] gi|260869246|ref|YP_003235648.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str. 11128] gi|297516926|ref|ZP_06935312.1| tRNA-specific adenosine deaminase [Escherichia coli OP50] gi|307139195|ref|ZP_07498551.1| tRNA-specific adenosine deaminase [Escherichia coli H736] gi|307313870|ref|ZP_07593486.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W] gi|150421688|sp|P68398|TADA_ECOLI RecName: Full=tRNA-specific adenosine deaminase gi|150421691|sp|P68397|TADA_SHIFL RecName: Full=tRNA-specific adenosine deaminase gi|145693172|gb|AAC75612.2| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. MG1655] gi|169890004|gb|ACB03711.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. DH10B] gi|170520631|gb|ACB18809.1| tRNA-specific adenosine deaminase [Escherichia coli SMS-3-5] gi|190901985|gb|EDV61732.1| tRNA-specific adenosine deaminase [Escherichia coli B7A] gi|194423412|gb|EDX39403.1| tRNA-specific adenosine deaminase [Escherichia coli 101-1] gi|238863717|gb|ACR65715.1| tRNA-specific adenosine deaminase [Escherichia coli BW2952] gi|253323587|gb|ACT28189.1| CMP/dCMP deaminase zinc-binding [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|257755302|dbj|BAI26804.1| tRNA-specific adenosine deaminase [Escherichia coli O26:H11 str. 11368] gi|257765602|dbj|BAI37097.1| tRNA-specific adenosine deaminase [Escherichia coli O111:H- str. 11128] gi|260448361|gb|ACX38783.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli DH1] gi|306906371|gb|EFN36886.1| CMP/dCMP deaminase zinc-binding [Escherichia coli W] gi|313651052|gb|EFS15452.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T] gi|313848716|emb|CAQ32934.2| tRNA-specific adenosine deaminase monomer, subunit of tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)] gi|315061878|gb|ADT76205.1| tRNA-specific adenosine deaminase [Escherichia coli W] gi|320186358|gb|EFW61092.1| tRNA-specific adenosine-34 deaminase [Shigella flexneri CDC 796-83] gi|320200123|gb|EFW74712.1| tRNA-specific adenosine-34 deaminase [Escherichia coli EC4100B] gi|323377541|gb|ADX49809.1| CMP/dCMP deaminase zinc-binding protein [Escherichia coli KO11] gi|323936299|gb|EGB32590.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli E1520] gi|323941178|gb|EGB37363.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli E482] gi|323944616|gb|EGB40684.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli H120] gi|323961174|gb|EGB56787.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli H489] gi|323971115|gb|EGB66362.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli TA007] gi|324113086|gb|EGC07062.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia fergusonii B253] gi|324118231|gb|EGC12127.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli E1167] gi|332092598|gb|EGI97670.1| tRNA-specific adenosine deaminase [Shigella boydii 3594-74] gi|332344434|gb|AEE57768.1| tRNA-specific adenosine deaminase [Escherichia coli UMNK88] gi|332756134|gb|EGJ86485.1| tRNA-specific adenosine deaminase [Shigella flexneri 2747-71] gi|332765914|gb|EGJ96125.1| tRNA-specific adenosine deaminase monomer [Shigella flexneri 2930-71] gi|333002351|gb|EGK21915.1| tRNA-specific adenosine deaminase [Shigella flexneri K-272] gi|333016173|gb|EGK35505.1| tRNA-specific adenosine deaminase [Shigella flexneri K-227] gi|333016472|gb|EGK35803.1| tRNA-specific adenosine deaminase [Shigella flexneri K-304] Length = 167 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 30 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 89 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 126 >gi|332754174|gb|EGJ84543.1| tRNA-specific adenosine deaminase [Shigella flexneri K-671] Length = 156 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 19 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 78 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 115 >gi|21229604|ref|NP_635521.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766481|ref|YP_241243.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris str. 8004] gi|21111078|gb|AAM39445.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571813|gb|AAY47223.1| deoxycytidylate deaminase [Xanthomonas campestris pv. campestris str. 8004] Length = 150 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 39/124 (31%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSV---ACLIVKDGIVIGRGVTAYGGCP------ 53 + +D RF A S W S +P+ A L K G G Y G P Sbjct: 1 MQKWDVRFCDLARYISAW-----SKDPNAKVGAVLFSKKG---GNVSIGYNGFPIGVEDS 52 Query: 54 ---------------HAEVQALEEAGEEARGATAYVTLEP-CSHYGRSPPCAQFIIECGI 97 HAEV A+ AG A G+T YV +P C+ CA II+ GI Sbjct: 53 AERLTDKDVKLELVVHAEVNAIIAAGVRAEGSTIYVWGKPICAR------CAGPIIQAGI 106 Query: 98 RRVV 101 +RVV Sbjct: 107 KRVV 110 >gi|86607357|ref|YP_476120.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Synechococcus sp. JA-3-3Ab] gi|86555899|gb|ABD00857.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Synechococcus sp. JA-3-3Ab] Length = 174 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 11/61 (18%) Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ AL +AG+ + +G YVTLEPC P CA I + + +V+ DDP Sbjct: 72 HAEILALRQAGQRLGDWQLQGCRLYVTLEPC------PMCAGAISQSRLAQVIYGADDPK 125 Query: 109 V 109 Sbjct: 126 A 126 >gi|169350292|ref|ZP_02867230.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552] gi|169293075|gb|EDS75208.1| hypothetical protein CLOSPI_01036 [Clostridium spiroforme DSM 1552] Length = 241 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 16/212 (7%) Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I +M +GKI T++ ++ S +IA ++ G S +T + Sbjct: 7 IFCHMLMSLDGKIVGKYMDTKECDEPSEQFYEIAFGKNAYYKHQGWLSGRVTTDDNFTMY 66 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTAL 241 + A +V G +AD +S + +DP KL S + +T Sbjct: 67 RKPKLDKTAPIVPSGDFIADG-----------NYSMYYVSIDPLGKLGWQSNTLTYETTT 115 Query: 242 LAPVIIVTENDDPVLALAFRKKNIN--IIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 + ++TE RK NI+ I+ D D K L+ L + + +L++ GG + Sbjct: 116 AHVLEVLTEKASSAYKAMLRKLNISYVIVGKDELDYKLLMEKLYHKFNIKTLMLGGGGVL 175 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 SFI + L D + L + + G PS E Sbjct: 176 NWSFIQTGLCDELSLVMAPVADGASQSPSIFE 207 >gi|332800258|ref|YP_004461757.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1] gi|332697993|gb|AEE92450.1| CMP/dCMP deaminase zinc-binding protein [Tepidanaerobacter sp. Re1] Length = 160 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 20/119 (16%) Query: 1 MPVSSF---DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCP 53 MP + D FM A++ ++ + + + +IVK VI R T Sbjct: 1 MPTLEYQKDDFFFMRQAIQEAKRAMEIDEV--PIGAVIVKADEVIARAHNLRETLQDATA 58 Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A+ +A E G T YVTLEPC P CA +I + R+V DP Sbjct: 59 HAELLAIRKACEVLGTWRLEGCTLYVTLEPC------PMCAGAVILSRVDRLVFGAKDP 111 >gi|297819466|ref|XP_002877616.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] gi|297323454|gb|EFH53875.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] Length = 232 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 32/100 (32%) Query: 32 ACLIVKDGIVIGRGVTAYG-GCP------------------------HAEVQA-LEEAGE 65 ACL+ ++G+++G G + GC HAEV A L Sbjct: 92 ACLVSQNGVILGIGYNGFPRGCSDDKLPWAKKSRTGDPLETKYPYVCHAEVNAILNTNHA 151 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 A G YVT+ PC+ CA+ I++ G+ V+ V+ Sbjct: 152 SAAGQKLYVTMFPCNE------CAKIILQSGVAEVIYFVE 185 >gi|311746929|ref|ZP_07720714.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp. PR1] gi|126578621|gb|EAZ82785.1| cytidine/deoxycytidylate deaminase family protein [Algoriphagus sp. PR1] Length = 160 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 28/83 (33%), Positives = 38/83 (45%), Gaps = 11/83 (13%) Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ A G+T YVTL PC CA+ I GI +VV + + Sbjct: 75 HAEQNAILYAVKNNTSVEGSTLYVTLAPC------LACARIIFSMGISKVVYLFSYAEYK 128 Query: 111 VSG--RGLQWLSQKGIIVDRMME 131 G G+ +L + GI VDR + Sbjct: 129 GIGTDEGVDFLRKFGIKVDRYTK 151 >gi|319943546|ref|ZP_08017828.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599] gi|319743361|gb|EFV95766.1| tRNA-specific adenosine deaminase [Lautropia mirabilis ATCC 51599] Length = 206 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 V ++VK G VI G + ++ HAE++ L A E+ +T YVTLEPC Sbjct: 43 VGAVLVKAGQVIATGYNHPIGSHDPTAHAEIRTLRMAAEQLGNYRVGESTLYVTLEPCMM 102 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C ++ I RVV DP V G Sbjct: 103 ------CLGAMLHARISRVVFGAPDPKTGVCG 128 >gi|168757783|ref|ZP_02782790.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4401] gi|168768660|ref|ZP_02793667.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4486] gi|188024727|ref|ZP_02773396.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4113] gi|189403941|ref|ZP_02786184.2| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4501] gi|195936706|ref|ZP_03082088.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4024] gi|208806459|ref|ZP_03248796.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4206] gi|208812941|ref|ZP_03254270.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4045] gi|208820370|ref|ZP_03260690.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4042] gi|209400171|ref|YP_002272033.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4115] gi|215487903|ref|YP_002330334.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str. E2348/69] gi|217327122|ref|ZP_03443205.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. TW14588] gi|254794508|ref|YP_003079345.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. TW14359] gi|261223005|ref|ZP_05937286.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. FRIK2000] gi|261259444|ref|ZP_05951977.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. FRIK966] gi|306814377|ref|ZP_07448539.1| tRNA-specific adenosine deaminase [Escherichia coli NC101] gi|150421686|sp|Q8XA44|TADA_ECO57 RecName: Full=tRNA-specific adenosine deaminase gi|150421687|sp|Q8FF24|TADA_ECOL6 RecName: Full=tRNA-specific adenosine deaminase gi|188017152|gb|EDU55274.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4113] gi|189355294|gb|EDU73713.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4401] gi|189362211|gb|EDU80630.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4486] gi|189368357|gb|EDU86773.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4501] gi|208726260|gb|EDZ75861.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4206] gi|208734218|gb|EDZ82905.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4045] gi|208740493|gb|EDZ88175.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4042] gi|209161571|gb|ACI39004.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. EC4115] gi|215265975|emb|CAS10384.1| tRNA-specific adenosine deaminase [Escherichia coli O127:H6 str. E2348/69] gi|217319489|gb|EEC27914.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. TW14588] gi|254593908|gb|ACT73269.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. TW14359] gi|305851771|gb|EFM52223.1| tRNA-specific adenosine deaminase [Escherichia coli NC101] gi|312947130|gb|ADR27957.1| tRNA-specific adenosine deaminase [Escherichia coli O83:H1 str. NRG 857C] gi|320180559|gb|EFW55490.1| tRNA-specific adenosine-34 deaminase [Shigella boydii ATCC 9905] gi|320188900|gb|EFW63559.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str. EC1212] gi|320640908|gb|EFX10396.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. G5101] gi|320646350|gb|EFX15277.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str. 493-89] gi|320651530|gb|EFX19917.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H- str. H 2687] gi|320657241|gb|EFX25050.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662847|gb|EFX30179.1| tRNA-specific adenosine deaminase [Escherichia coli O55:H7 str. USDA 5905] gi|320667651|gb|EFX34566.1| tRNA-specific adenosine deaminase [Escherichia coli O157:H7 str. LSU-61] gi|323955795|gb|EGB51553.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli H263] gi|323968007|gb|EGB63419.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli M863] gi|326340365|gb|EGD64169.1| tRNA-specific adenosine-34 deaminase [Escherichia coli O157:H7 str. 1125] gi|332088011|gb|EGI93136.1| tRNA-specific adenosine deaminase [Shigella boydii 5216-82] gi|332089781|gb|EGI94882.1| tRNA-specific adenosine deaminase [Shigella dysenteriae 155-74] Length = 167 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++V + VIG G + + HAE+ AL + G + R AT YVTLEPC Sbjct: 30 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCV- 88 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 CA +I I RVV D +G + L G+ Sbjct: 89 -----MCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGM 126 >gi|83588899|ref|YP_428908.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073] gi|83571813|gb|ABC18365.1| tRNA-adenosine deaminase [Moorella thermoacetica ATCC 39073] Length = 150 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 48/110 (43%), Gaps = 19/110 (17%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE 65 +M AL +R L + +IV G +I R T HAE+ AL A Sbjct: 6 YMGEALDEARKAFDLGEV--PIGAVIVAGGEIIARAGNRRETLADPTAHAEIIALRAAAR 63 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 GAT YVTLEPC P CA +++ IR++V PD+R Sbjct: 64 VRGDWRLTGATLYVTLEPC------PMCAGALVQARIRQLVYGA--PDLR 105 >gi|255021639|ref|ZP_05293681.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC 51756] gi|254968899|gb|EET26419.1| tRNA-specific adenosine-34 deaminase [Acidithiobacillus caldus ATCC 51756] Length = 178 Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 16/110 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D +M AL +R L P A L+ G ++ R + C HAE+ L E Sbjct: 24 DRHWMGLALEQARC-ASLVGEVPVGAVLLSASGALLARAHNRPIAMQDPCAHAEILVLRE 82 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A G T YVTLEPC+ CA +++ + ++V DP Sbjct: 83 AARALGNYRLLGTTLYVTLEPCAM------CAGAMLQARVAQLVFAARDP 126 >gi|326792204|ref|YP_004310025.1| dCMP deaminase [Clostridium lentocellum DSM 5427] gi|326542968|gb|ADZ84827.1| dCMP deaminase [Clostridium lentocellum DSM 5427] Length = 169 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 7/60 (11%) Query: 47 TAYGGCPHAEVQALEEA-GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVD 105 T Y HAE+ A+ A G+ GA YV L PC+ C + II+CGI+ V+ D Sbjct: 77 TKYPFVVHAELNAILNARGKSLVGARIYVALFPCNE------CCKAIIQCGIKEVIYLSD 130 >gi|126668408|ref|ZP_01739365.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17] gi|126627117|gb|EAZ97757.1| hypothetical protein MELB17_14743 [Marinobacter sp. ELB17] Length = 167 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 15/86 (17%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 V ++V DG +G G +++ HAE+ AL +A GAT YVTLEPC+ Sbjct: 34 VGAVVVIDGQEVGAGFNKPISSCDPTAHAEICALRQAATYLNNYRLSGATLYVTLEPCTM 93 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDP 107 C I+ I RVV +P Sbjct: 94 ------CVGAIVHSRISRVVYGATEP 113 >gi|269986852|gb|EEZ93129.1| dihydrofolate reductase region [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 171 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 5/98 (5%) Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + +K+ N+I D + K+++ I+ +G +S +V GGA +A SF+ LV+ I L Sbjct: 74 IKLKKEWKNVIVTDKKP-KEIIRIIEEKGYSSAMVAGGA-LATSFLKENLVNEIYLNIEP 131 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEY 354 + +G+ GIP E + EK ++ F D V L Y Sbjct: 132 LALGK-GIPLFSNENF-EKKLKLLQVKRFSKDEVRLHY 167 >gi|254567633|ref|XP_002490927.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to urac [Pichia pastoris GS115] gi|238030724|emb|CAY68647.1| Cytosine deaminase, zinc metalloenzyme that catalyzes the hydrolytic deamination of cytosine to urac [Pichia pastoris GS115] gi|328352537|emb|CCA38936.1| cytosine deaminase [Pichia pastoris CBS 7435] Length = 150 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 14/82 (17%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCS 80 P A L+ +DG V+G G + HAE+ ALE AG + + T Y TL PC Sbjct: 26 PIGAALVSEDGTVLGVGHNLRIQKGSSVFHAEMSALENAGRLPGKTYKNCTMYTTLSPCH 85 Query: 81 HYGRSPPCAQFIIECGIRRVVV 102 C+ + GI+RVV+ Sbjct: 86 M------CSGACLMYGIKRVVL 101 >gi|219120746|ref|XP_002181105.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407821|gb|EEC47757.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 693 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 56/192 (29%), Positives = 74/192 (38%), Gaps = 39/192 (20%) Query: 28 NPSV-ACLIVKDGIVIG-----------RGVTAYGG---CPHAEVQALEEAGEEARG--- 69 P+V A L+ DG ++G R A G P +E + E+ R Sbjct: 125 KPTVGAVLVADDGRILGKARSDFRNDAVRAAIAQAGLEVTPLSEWCVSWPSSEQLRKDLE 184 Query: 70 -ATAYVTLEPCSHYGRS--PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +T YVTLEP S + PP Q I GI RVV+ DP +G L GI V Sbjct: 185 TSTLYVTLEPSSEREGTALPPITQLIELVGIPRVVIGCADPIQERHSKGAAALHSAGIEV 244 Query: 127 DRM---MESEGKIFLHAYLTRQVEK-----RSHITLK---------IAVSQDNMIGMAGC 169 RM +E E + + AY K R+H L V DN+ A Sbjct: 245 -RMGSVLEEECENLIVAYAQLANSKLHKMARTHFNLFGRPLGFLHCSVVDSDNIEAFARQ 303 Query: 170 GSVPITGFISKN 181 G+ T F +N Sbjct: 304 GNAFGTKFGGQN 315 >gi|193212272|ref|YP_001998225.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327] gi|193085749|gb|ACF11025.1| CMP/dCMP deaminase zinc-binding [Chlorobaculum parvum NCIB 8327] Length = 148 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D FM+ AL +R V ++V++G +I G V H E+ + + Sbjct: 4 DREFMALALEQAR--KSYEEGGVPVGAVMVENGKLIAAGHNQRVQNADPIAHGEMDCIRK 61 Query: 63 AGEEAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG AR T Y TL PC CA I++ GI RVVV D R ++L Sbjct: 62 AGRRARYDTVTLYTTLSPCMM------CAGAIVQFGIGRVVVGED----RNFKGNAEFLR 111 Query: 121 QKGIIVDRMMESEG 134 + G+ V +++ EG Sbjct: 112 EHGVEV-TLLDDEG 124 >gi|186684043|ref|YP_001867239.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] gi|186466495|gb|ACC82296.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] Length = 161 Score = 36.6 bits (83), Expect = 7.1, Method: Compositional matrix adjust. Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 30/106 (28%) Query: 54 HAEVQALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD-- 106 HAE+ AL+ A + T YVTLEPC P CA I++ + ++V VDD Sbjct: 61 HAEILALKTAATTLQNWHLNECTLYVTLEPC------PMCAGAILQARVGQLVYGVDDTK 114 Query: 107 ----------PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 PD S GLQ ++ ++ES + L A+ Sbjct: 115 TGAIRTVINIPDSAASNHGLQ-------VIGGILESACREQLQAWF 153 >gi|303232398|ref|ZP_07319090.1| cytidine and deoxycytidylate deaminase zinc-binding region [Atopobium vaginae PB189-T1-4] gi|302481482|gb|EFL44550.1| cytidine and deoxycytidylate deaminase zinc-binding region [Atopobium vaginae PB189-T1-4] Length = 164 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 + ++V +G +I R + HAE A++ A E + G T YVTLEPC Sbjct: 40 IGAVVVYNGAIIARAHNTREESTNPAGHAEFLAMQHAAETLQRWRLFGCTVYVTLEPCLM 99 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ I R V DP G Sbjct: 100 ------CAGLMLNARIDRCVYAASDPKAGAVG 125 >gi|120403479|ref|YP_953308.1| hypothetical protein Mvan_2490 [Mycobacterium vanbaalenii PYR-1] gi|119956297|gb|ABM13302.1| bifunctional deaminase-reductase domain protein [Mycobacterium vanbaalenii PYR-1] Length = 264 Score = 36.2 bits (82), Expect = 7.2, Method: Compositional matrix adjust. Identities = 37/150 (24%), Positives = 62/150 (41%), Gaps = 12/150 (8%) Query: 186 LRAQSDAILVGIGTVLADD--------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 LR +D I+VG TV ++ E R Q P +L L D+K+ Sbjct: 72 LRDLADVIVVGAATVRVENYSGVQLGAAERLARQRRGQAEVPPVAVLTRSGLLDRDAKLF 131 Query: 238 KTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + P+I+ + E+ L + + D DL+ L +L RG+ +L E Sbjct: 132 HLTDVPPLILTSSDAVEDTRQRLGAVAEVVDASGPAPDSVDLRTALDLLAERGLVRVLTE 191 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GG + F L+D + L + +++G G Sbjct: 192 GGPGILGMFTEQDLLDELCLTVAPLLLGGG 221 >gi|301165417|emb|CBW24988.1| putative nucleotide deaminase [Bacteriovorax marinus SJ] Length = 158 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 11/61 (18%) Query: 52 CPHAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 C HAE+ A+ EA ++ G T YVTLEPC P C +I+ + ++V D Sbjct: 55 CGHAEIIAIREACKKRGDWRLSGCTIYVTLEPC------PMCLSAMIQARVDKLVFAAYD 108 Query: 107 P 107 P Sbjct: 109 P 109 >gi|239833547|ref|ZP_04681875.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301] gi|239821610|gb|EEQ93179.1| CMP/dCMP deaminase zinc-binding [Ochrobactrum intermedium LMG 3301] Length = 173 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 40/91 (43%), Gaps = 25/91 (27%) Query: 31 VACLIVKDGIVIGRG---------VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTL 76 + +IV G +I R VTA HAEV A+ EAGE + G YVTL Sbjct: 50 IGAVIVHQGTIIARAGNRTRELNDVTA-----HAEVLAIREAGETLQSERLVGCDLYVTL 104 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 EPC+ CA I IRR+ DP Sbjct: 105 EPCAM------CAAAISFARIRRLYYGATDP 129 >gi|290558972|gb|EFD92355.1| CMP/dCMP deaminase zinc-binding [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 159 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 35/137 (25%), Positives = 51/137 (37%), Gaps = 47/137 (34%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP------- 53 M S+D F + S T AC+IVK+ ++ G Y G P Sbjct: 1 MSRPSWDEYFTEITKKVSERS---TCDRGHAACVIVKENRILATG---YAGSPKGMPHCD 54 Query: 54 -------------------------HAEVQALEEA---GEEARGATAYVTLEPCSHYGRS 85 HAE A+ +A G +TAY+T+EPC Sbjct: 55 DVGHLLRKQYDNETGEITVHCLRTVHAEQNAITQAAKFGVSLSDSTAYITMEPCF----- 109 Query: 86 PPCAQFIIECGIRRVVV 102 CA+ +++ GI+RVV Sbjct: 110 -TCAKMLVQVGIKRVVA 125 >gi|255994428|ref|ZP_05427563.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium saphenum ATCC 49989] gi|255993141|gb|EEU03230.1| cytidine/deoxycytidylate deaminase family protein [Eubacterium saphenum ATCC 49989] Length = 155 Score = 36.2 bits (82), Expect = 7.4, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 13/76 (17%) Query: 54 HAEVQALEE---AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ + +G+ GAT Y+T +PC C++ II GI+R+VV PD Sbjct: 83 HAEQNAIIQCAMSGQNIEGATIYITHQPCI------ICSKMIINAGIKRIVVREGYPD-- 134 Query: 111 VSGRGLQWLSQKGIIV 126 Q LS+ G+ + Sbjct: 135 --NLAKQILSEAGLSI 148 >gi|291482388|dbj|BAI83463.1| hypothetical protein BSNT_00036 [Bacillus subtilis subsp. natto BEST195] Length = 161 Score = 36.2 bits (82), Expect = 7.5, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 55/128 (42%), Gaps = 21/128 (16%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 P A L+V D I I R T HAE+ ++EA + GAT YVTLEPC Sbjct: 25 PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEG 134 P CA ++ + +VV DP SG + L + + +V ++E E Sbjct: 84 ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEEC 137 Query: 135 KIFLHAYL 142 L A+ Sbjct: 138 GGMLSAFF 145 >gi|302534595|ref|ZP_07286937.1| gp20 [Streptomyces sp. C] gi|302443490|gb|EFL15306.1| gp20 [Streptomyces sp. C] Length = 117 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Query: 49 YGGCP--HAEVQALEEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 Y C HAE A+ A + RG+T YVT PC P C I GIRRVV Sbjct: 66 YSNCAAVHAEANAIHHADPTQLRGSTLYVTRMPC------PACTTLIRSAGIRRVV 115 >gi|312113039|ref|YP_004010635.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii ATCC 17100] gi|311218168|gb|ADP69536.1| CMP/dCMP deaminase zinc-binding protein [Rhodomicrobium vannielii ATCC 17100] Length = 157 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 59/140 (42%), Gaps = 20/140 (14%) Query: 28 NPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEP 78 P A ++ DG + GRG ++ HAE++A+ +A E + G YVTLEP Sbjct: 17 TPVGAVVVAPDGSIAGRGHNLVISVRDPFGHAEMRAIRQACEAVQSERLPGYDLYVTLEP 76 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-----IVDRMMESE 133 C+ CA I IRR+ D G+++ S I + ++E Sbjct: 77 CTM------CAAAISFARIRRLYFGAWDEKGGAVENGVRFFSAATCHHAPEIYGGIAQAE 130 Query: 134 GKIFLHAYLTRQVEKRSHIT 153 L A+ + ++R+ + Sbjct: 131 AAALLRAFFQERRDERAQVN 150 >gi|254457747|ref|ZP_05071175.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1] gi|207086539|gb|EDZ63823.1| deoxycytidylate deaminase [Campylobacterales bacterium GD 1] Length = 147 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 39/101 (38%) Query: 31 VACLIVKDGIVIGRGVTAYGGCP---------------------------HAEVQALEEA 63 V +IVKDG ++ G Y G P HAE+ A+ A Sbjct: 25 VGAVIVKDGRILSTG---YNGTPAGFTNCCDHWNGEYTPDHHEWSKTYEIHAEMNAIIWA 81 Query: 64 GEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + GA+ +VTLEPCS C++ +I GI+R+V Sbjct: 82 ARKGISIEGASIFVTLEPCS------ECSKNLIASGIKRIV 116 >gi|164686927|ref|ZP_02210955.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM 16795] gi|164604030|gb|EDQ97495.1| hypothetical protein CLOBAR_00529 [Clostridium bartlettii DSM 16795] Length = 150 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 15/81 (18%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + +IVKD +IGRG T HAE+ A+++A E G YVT+EPC Sbjct: 25 IGAVIVKDSEIIGRGHNLTETLRDSTAHAEMLAIKDASETLGGWRLTDCDLYVTMEPC-- 82 Query: 82 YGRSPPCAQFIIECGIRRVVV 102 C+ I+ I+ +++ Sbjct: 83 ----IMCSGAIVNSRIKNIII 99 >gi|77917942|ref|YP_355757.1| putative deaminase [Pelobacter carbinolicus DSM 2380] gi|77544025|gb|ABA87587.1| tRNA-adenosine deaminase [Pelobacter carbinolicus DSM 2380] Length = 159 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 34/92 (36%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V ++VKDG++IGRG T+ HAE+ A+ +A G T YVTLEPC Sbjct: 19 VGAVVVKDGMIIGRGHNLRETSNDPTTHAEMIAIRQAAAAIDSWRLIGCTLYVTLEPCVM 78 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C II I R+V DP V G Sbjct: 79 ------CMGAIILARIPRLVFGSRDPRVGAVG 104 >gi|291518542|emb|CBK73763.1| Pyrimidine reductase, riboflavin biosynthesis [Butyrivibrio fibrisolvens 16/4] Length = 107 Score = 36.2 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 1/57 (1%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 DL +L+ L G+ S+L+EGG + +S + S++VD I ++ + + G G SP+E Sbjct: 19 DLNELMGKLGSLGIDSVLLEGGGTLNYSALESKIVDEIHIHIAPKIFG-GSSKSPVE 74 >gi|166368572|ref|YP_001660845.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa NIES-843] gi|166090945|dbj|BAG05653.1| cytidine and deoxycytidylate deaminase [Microcystis aeruginosa NIES-843] Length = 162 Score = 36.2 bits (82), Expect = 7.6, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 15/92 (16%) Query: 29 PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 P A ++ K G +I +G + HAE+ A+ A + T YVTLEPC Sbjct: 37 PVGAVIVDKQGHLIAQGANCKEKHHDPTAHAEILAIRAASQVLGNWHLNDCTLYVTLEPC 96 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 P CA II+ + +V DDP V Sbjct: 97 ------PMCAGAIIQARLGLLVYGADDPKTGV 122 >gi|163961159|gb|ABY50083.1| cytosine deaminase [Candida tropicalis] Length = 120 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 14/77 (18%) Query: 34 LIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG----EEARGATAYVTLEPCSHYGRS 85 +I DG V+G+G + H E+ ALE+AG + + T Y TL PC+ Sbjct: 1 IISSDGKVLGKGHNERIQKGSAILHGEMSALEDAGRLPGKAYKDCTIYTTLSPCNM---- 56 Query: 86 PPCAQFIIECGIRRVVV 102 C I+ GI+RVV+ Sbjct: 57 --CTGAILLYGIKRVVM 71 >gi|16077086|ref|NP_387899.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. subtilis str. 168] gi|221307827|ref|ZP_03589674.1| hypothetical protein Bsubs1_00090 [Bacillus subtilis subsp. subtilis str. 168] gi|221312149|ref|ZP_03593954.1| hypothetical protein BsubsN3_00090 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317082|ref|ZP_03598376.1| hypothetical protein BsubsJ_00090 [Bacillus subtilis subsp. subtilis str. JH642] gi|221321345|ref|ZP_03602639.1| hypothetical protein BsubsS_00090 [Bacillus subtilis subsp. subtilis str. SMY] gi|112703|sp|P21335|TADA_BACSU RecName: Full=tRNA-specific adenosine deaminase gi|40011|emb|CAA36389.1| unnamed protein product [Bacillus subtilis subsp. subtilis str. 168] gi|467408|dbj|BAA05254.1| unknown [Bacillus subtilis] gi|2632285|emb|CAB11794.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. subtilis str. 168] gi|227231|prf||1617102A 17kD protein Length = 161 Score = 36.2 bits (82), Expect = 7.7, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 20/126 (15%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPCSH 81 + ++V +G +I R T HAE+ ++EA + GAT YVTLEPC Sbjct: 26 IGAVLVINGEIIARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC-- 83 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ-----KGIIVDRMMESEGKI 136 P CA ++ + +VV DP SG + L + + +V ++E E Sbjct: 84 ----PMCAGAVVLSRVEKVVFGAFDPKGGCSGTLMNLLQEERFNHQAEVVSGVLEEECGG 139 Query: 137 FLHAYL 142 L A+ Sbjct: 140 MLSAFF 145 >gi|254520799|ref|ZP_05132855.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA] gi|226914548|gb|EEH99749.1| CMP/dCMP deaminase [Clostridium sp. 7_2_43FAA] Length = 147 Score = 36.2 bits (82), Expect = 7.8, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 11/70 (15%) Query: 53 PHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A+EEA ++ G YVTLEPC P CA I + I R+ + + Sbjct: 48 AHAEILAIEEACKKLNNWRLSGCEMYVTLEPC------PMCAAAIAQSRISRLFIGTFNK 101 Query: 108 DVRVSGRGLQ 117 D+ G + Sbjct: 102 DMGACGSTIN 111 >gi|50730877|ref|XP_417059.1| PREDICTED: similar to protein kinase NYD-SP15 [Gallus gallus] Length = 495 Score = 36.2 bits (82), Expect = 8.0, Method: Compositional matrix adjust. Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%) Query: 17 FSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCP----HAEVQALEEAGEEARGAT 71 FS W ST + K G+V+ + +T G C HA AL + G + + Sbjct: 45 FSLWMELFPSTEQRKKSQVKKSGLVVVKNMTIIGLHCSSTDLHAGQIALIKHGSKLKNCD 104 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 Y + +PCS C + I+ G+ R+ DP++ + Sbjct: 105 LYFSRKPCS------TCLKMIVNAGVNRISYWPADPEISLQNEA 142 >gi|326803497|ref|YP_004321315.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a] gi|326650126|gb|AEA00309.1| ComE operon protein 2 [Aerococcus urinae ACS-120-V-Col10a] Length = 170 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 50/122 (40%), Gaps = 31/122 (25%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT---------AYGGCP--- 53 +D F+S AL S + T V +IV+D VI G + GGC Sbjct: 6 WDQYFLSQALVLS---MRSTCDRLMVGAVIVRDNRVIAGGYNGSVSGETHCSEGGCYLED 62 Query: 54 -------HAEVQAL---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 HAE+ A+ + G GA YVT PC PC + II+ GI++V Sbjct: 63 GHCVRTIHAEMNAIIQCAKFGVSTEGAEIYVTHFPC------LPCTKQIIQAGIKKVSYL 116 Query: 104 VD 105 D Sbjct: 117 YD 118 >gi|257899803|ref|ZP_05679456.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15] gi|293571142|ref|ZP_06682180.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980] gi|257837715|gb|EEV62789.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com15] gi|291608755|gb|EFF38039.1| tRNA-specific adenosine deaminase [Enterococcus faecium E980] Length = 165 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 15/101 (14%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V +G VIG+G T HAE+ A++EA E+ A+ +VTLEPC Sbjct: 33 IGAVVVLEGEVIGKGYNLRETTQDATTHAEMLAIKEACEKVGSWRLENASLFVTLEPC-- 90 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P C+ +I + V DP +G + L + Sbjct: 91 ----PMCSGAMILSRVAEVYFGAYDPKGGTAGTLMNLLEDE 127 >gi|212635213|ref|YP_002311738.1| dihydrofolate reductase [Shewanella piezotolerans WP3] gi|212556697|gb|ACJ29151.1| Dihydrofolate reductase, putative [Shewanella piezotolerans WP3] Length = 186 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +L L+ L G ++GGA + SF+N +L++ II+ R+ +++GEG Sbjct: 104 ELTALIAKLESEGHQHAYIDGGATI-QSFLNLKLINEIIITRAPVILGEG 152 >gi|171911154|ref|ZP_02926624.1| cytidine/deoxycytidylate deaminase family protein [Verrucomicrobium spinosum DSM 4136] Length = 176 Score = 36.2 bits (82), Expect = 8.2, Method: Compositional matrix adjust. Identities = 37/125 (29%), Positives = 50/125 (40%), Gaps = 27/125 (21%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M ALR +R + +IV +I R T HAE+ AL + Sbjct: 13 DEHYMREALRQAR--KAARQDEVPIGAVIVHGSQIIARAWNQVETLKDATAHAEMIALTQ 70 Query: 63 AGEEARGATA---------YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A +GA YVT EPC P CA I+ C +RRV+ PD++ Sbjct: 71 A----QGALGDWRLNECDLYVTKEPC------PMCAGAIMHCRVRRVIFGC--PDLKGGA 118 Query: 114 RGLQW 118 G W Sbjct: 119 AGGYW 123 >gi|209527530|ref|ZP_03276032.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328] gi|209492018|gb|EDZ92371.1| CMP/dCMP deaminase zinc-binding [Arthrospira maxima CS-328] Length = 157 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 34/117 (29%), Positives = 48/117 (41%), Gaps = 16/117 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57 P + + +M AL+ G P A ++ + G +I +G HAE+ Sbjct: 3 PTYTTHSHWMRQALKLGA-AAGEAGEVPVGAVIVNQQGKLIAQGENRRERDRDPTAHAEI 61 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AL +A + T YVTLEPC P CA II+ I +V DDP Sbjct: 62 IALRQASQVLGDWHLDTCTLYVTLEPC------PMCAGAIIQARIGLLVYGADDPKT 112 >gi|326564207|gb|EGE14443.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 12P80B1] Length = 184 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 18/115 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D M+ AL ++ G V ++V +G ++G G +T HAE+ A+ Sbjct: 28 DVEMMNHALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 85 Query: 63 AGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 A E +G YVTLEPC+ C +I I RVV +P V Sbjct: 86 ACETLNNYRLPKGCILYVTLEPCTM------CFGALIHARISRVVFGAFEPKAGV 134 >gi|254411343|ref|ZP_05025120.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181844|gb|EDX76831.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Microcoleus chthonoplastes PCC 7420] Length = 143 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 14/99 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG 64 FM+AA+ ++ GL + ++VK+G +IG+G V HAE+ L AG Sbjct: 3 EFMAAAIAQAKQ--GLREGGIPIGSVLVKEGQIIGQGYNKRVQDNDPVTHAEIDCLRHAG 60 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 Y TL PC CA +++ GI++V+ Sbjct: 61 RIGNYNDTILYSTLMPCY------LCAGAVVQFGIKKVI 93 >gi|74317234|ref|YP_314974.1| tRNA-adenosine deaminase [Thiobacillus denitrificans ATCC 25259] gi|74056729|gb|AAZ97169.1| probable cytosine/adenosine deaminases [Thiobacillus denitrificans ATCC 25259] Length = 151 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 41/82 (50%), Gaps = 19/82 (23%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-------GATAYVTLEPC 79 V L+V G ++GRG ++++ HAEV AL +A AR G T YVT+EPC Sbjct: 19 VGALVVCGGEIVGRGYNRPISSFDPTAHAEVMALRDAA--ARLGNYRLVGCTLYVTMEPC 76 Query: 80 SHYGRSPPCAQFIIECGIRRVV 101 CA I+ I RVV Sbjct: 77 VM------CAGAILHARIARVV 92 >gi|299753369|ref|XP_001833230.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis cinerea okayama7#130] gi|298410269|gb|EAU88503.2| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Coprinopsis cinerea okayama7#130] Length = 170 Score = 36.2 bits (82), Expect = 8.6, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 3/56 (5%) Query: 73 YVTLEPCS--HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 Y TLEPCS G SP CA +I+ +RR ++ V++P V G L GI V Sbjct: 98 YTTLEPCSIRTSGLSP-CADALIKAKVRRCIIGVNEPPDFVKCEGADRLKAAGIEV 152 >gi|162450858|ref|YP_001613225.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56'] gi|161161440|emb|CAN92745.1| putative zinc-binding hydrolase [Sorangium cellulosum 'So ce 56'] Length = 177 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 27/59 (45%), Gaps = 11/59 (18%) Query: 54 HAEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAEV AL A GAT Y TLEPC P CA ++ I R+V DP Sbjct: 75 HAEVDALRAAARRLGHWRLEGATVYATLEPC------PMCAGALVNARIARLVYGCPDP 127 >gi|111023823|ref|YP_706795.1| hypothetical protein RHA1_ro06865 [Rhodococcus jostii RHA1] gi|110823353|gb|ABG98637.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus jostii RHA1] Length = 262 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 45/210 (21%), Positives = 82/210 (39%), Gaps = 29/210 (13%) Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI---GMAGCGSVPITGFISKNQVHLLR 187 ES Y R + + S D + G++G P + + LR Sbjct: 23 ESTANALRDLYAYPAETPRPWVRVNFVSSIDGAVSVDGVSGALGTPADRLVFET----LR 78 Query: 188 AQSDAILVGIGTVLADD-------PELTCR--LNGLQEHSPMRII-----LDPHFKLSLD 233 +D +LVG GTV ++ E R +G+ E P+ ++ LDP +L D Sbjct: 79 ELADVVLVGAGTVRVENYGGARIHAEGRRRRVASGMPEVPPIAVVSARAHLDPQSRLFTD 138 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLL 291 +++ AP+++ + DP A I+ + L+ L G+ +L Sbjct: 139 TEV------APIVVTCTDADPGRVRALADAGARIVTAGDGQISGDGLIAALEHLGLRRVL 192 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 EGG ++ +VD + L + +++G Sbjct: 193 CEGGPSLFGRLTADDVVDEVCLTTAPVLVG 222 >gi|227552392|ref|ZP_03982441.1| nucleoside deaminase [Enterococcus faecium TX1330] gi|257888367|ref|ZP_05668020.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733] gi|257896743|ref|ZP_05676396.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12] gi|293378075|ref|ZP_06624251.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium PC4.1] gi|227178480|gb|EEI59452.1| nucleoside deaminase [Enterococcus faecium TX1330] gi|257824421|gb|EEV51353.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,141,733] gi|257833308|gb|EEV59729.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium Com12] gi|292643330|gb|EFF61464.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium PC4.1] Length = 171 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEEA-----RGATAYVTLEPCSH 81 + ++V +G VIG+G T HAE+ A++EA E+ A+ +VTLEPC Sbjct: 33 IGAVVVLEGEVIGKGYNLRETTQDATTHAEMLAIKEACEKVGSWRLENASLFVTLEPC-- 90 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P C+ +I + V DP +G Sbjct: 91 ----PMCSGAMILSRVAEVYFGAYDPKGGTAG 118 >gi|118580679|ref|YP_901929.1| CMP/dCMP deaminase [Pelobacter propionicus DSM 2379] gi|118503389|gb|ABK99871.1| tRNA-adenosine deaminase [Pelobacter propionicus DSM 2379] Length = 181 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81 + C+IV+D +I RG ++ HAE+ A+ +A + T YVTLEPC+ Sbjct: 37 IGCVIVRDNRIIARGHNLRESSQDPSAHAEMIAIRKAARKLSSWRLLDTTLYVTLEPCTM 96 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 C II I RVV DP +G Sbjct: 97 ------CMGAIILSRIPRVVFGCLDPKGGAAG 122 >gi|91792629|ref|YP_562280.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217] gi|91714631|gb|ABE54557.1| CMP/dCMP deaminase, zinc-binding [Shewanella denitrificans OS217] Length = 177 Score = 36.2 bits (82), Expect = 8.9, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 45/103 (43%), Gaps = 15/103 (14%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VKD ++ G ++ + HAE+ + AG E R T YVTLEPC Sbjct: 43 VGAVLVKDNQLLATGFNLSISEHDCSAHAEMACIRAAGTLIENYRLLDTTLYVTLEPC-- 100 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 P CA ++ I R+V D +G + L G+ Sbjct: 101 ----PMCAGAMVHARIARLVFGATDLKTGAAGSVMNLLQHPGL 139 >gi|307544260|ref|YP_003896739.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581] gi|307216284|emb|CBV41554.1| CMP/dCMP deaminase, zinc-binding [Halomonas elongata DSM 2581] Length = 155 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 33/128 (25%) Query: 29 PSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEEA-----RGATAYVTLEPC 79 P A ++ + G ++G G A + HAE++AL +AG G T +VTLEPC Sbjct: 25 PVGAVVVDRAGEIVGSGFNAPVSDHDPSAHAEIRALRDAGTRLGNYRLDGCTLFVTLEPC 84 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 C II + RVV +P SG M+ES +F Sbjct: 85 LM------CTGAIIHARLARVVYGAAEPR---SG---------------MVESRANLFAQ 120 Query: 140 AYLTRQVE 147 + +VE Sbjct: 121 PWYNHRVE 128 >gi|296332941|ref|ZP_06875399.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672716|ref|YP_003864387.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149905|gb|EFG90796.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410959|gb|ADM36077.1| tRNA specific adenosine deaminase [Bacillus subtilis subsp. spizizenii str. W23] Length = 161 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 46/103 (44%), Gaps = 16/103 (15%) Query: 29 PSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGE-----EARGATAYVTLEPC 79 P A L+V D I I R T HAE+ ++EA + GAT YVTLEPC Sbjct: 25 PIGAVLVVNDEI-IARAHNLRETEQRSIAHAEMLVIDEACKALGTWRLEGATLYVTLEPC 83 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 P CA ++ + +VV DP SG + L ++ Sbjct: 84 ------PMCAGAVVLSRVEKVVFGAFDPKGGCSGTIMNLLQEE 120 >gi|313902768|ref|ZP_07836165.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965] gi|313466888|gb|EFR62405.1| tRNA-adenosine deaminase [Thermaerobacter subterraneus DSM 13965] Length = 200 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Query: 54 HAEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ L EA G G T YVTLEPC P CA I+ + R+V DP Sbjct: 77 HAEILVLREAAARLGGWRLEGVTLYVTLEPC------PMCAGAIVLARVPRLVYGARDPK 130 Query: 109 VRVSG 113 +G Sbjct: 131 AGAAG 135 >gi|311743456|ref|ZP_07717262.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium marinum DSM 15272] gi|311312586|gb|EFQ82497.1| riboflavin biosynthesis protein RibD domain protein [Aeromicrobium marinum DSM 15272] Length = 250 Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust. Identities = 35/167 (20%), Positives = 75/167 (44%), Gaps = 13/167 (7%) Query: 167 AGCGSVPITGFIS----KNQVHLLRAQSDAILVGIGTVLADD-PELTCRLNGLQEH---- 217 A G ++G IS ++ + +R +D +L+G GT+ + +T R + Q+ Sbjct: 48 AAAGPDGLSGSISSPEDRDVLVAVRRHADVVLIGAGTLRGERYSPMTARASDAQQRHEAG 107 Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 +P +L L D + + PV++ ++ DP +A + + +++ Sbjct: 108 QRSAPTLAVLSGSLDLPWDLPVWAGSTHRPVVLSRDDADPG-RIATARTHADLVLLPDLA 166 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++ LV RG+ ++ EGG ++ + + LVD + S + +G Sbjct: 167 PATIIGALVERGLRRIVCEGGPSLLRELMVAGLVDEADITVSPLFVG 213 >gi|110803707|ref|YP_697380.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101] gi|110684208|gb|ABG87578.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens SM101] Length = 143 Score = 35.8 bits (81), Expect = 9.4, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVK+G +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|326560079|gb|EGE10469.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 46P47B1] gi|326561665|gb|EGE12002.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 103P14B1] gi|326565806|gb|EGE15968.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC1] gi|326570459|gb|EGE20499.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC8] gi|326573436|gb|EGE23404.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 101P30B1] Length = 181 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 48/115 (41%), Gaps = 18/115 (15%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPHAEVQALEE 62 D M+ AL ++ G V ++V +G ++G G +T HAE+ A+ Sbjct: 25 DVEMMNRALEIAKQ--GAKFGEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIVAVRR 82 Query: 63 AGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 A E +G YVTLEPC+ C +I I RVV +P V Sbjct: 83 ACETLNNYRLPKGCILYVTLEPCTM------CFGALIHARISRVVFGAFEPKAGV 131 >gi|168217743|ref|ZP_02643368.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] gi|182380212|gb|EDT77691.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens NCTC 8239] Length = 143 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVK+G +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLNGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|160871633|ref|ZP_02061765.1| tRNA-specific adenosine deaminase [Rickettsiella grylli] gi|159120432|gb|EDP45770.1| tRNA-specific adenosine deaminase [Rickettsiella grylli] Length = 160 Score = 35.8 bits (81), Expect = 9.6, Method: Compositional matrix adjust. Identities = 32/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV---IGRGVTAYGGCPHAEV 57 + VS D +M AL + H + P A L+ D ++ + +T HAE+ Sbjct: 6 IAVSQRDTAYMQLALNQAA-HAKRSHEVPIGAILVWNDHVIATAYNQTLTRCDPTAHAEI 64 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 L+E ++ + AT YVTLEPC C +I+ I+R+V D Sbjct: 65 VVLQETAKQLKNHRLLDATLYVTLEPC------LMCVGAMIQARIKRLVFGAYD 112 >gi|320451012|ref|YP_004203108.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] gi|320151181|gb|ADW22559.1| tRNA(Ile)-lysidine synthase [Thermus scotoductus SA-01] Length = 514 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 45/104 (43%), Gaps = 10/104 (9%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP--HAEVQALEE 62 S + R+M+ AL +R P A L+V + + P HAE+ L E Sbjct: 377 SEEERYMALALEEAR-QAFQEGEVPVGAVLVVGERVYRAHNQVEATRDPTAHAEMLLLRE 435 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 G ARG YVTLEPC C + E G+ VV V++ Sbjct: 436 VGRGARGGRLYVTLEPCRM------CHHALREAGV-EVVYGVEN 472 >gi|42527696|ref|NP_972794.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC 35405] gi|41818524|gb|AAS12713.1| deoxycytidylate deaminase, putative [Treponema denticola ATCC 35405] Length = 165 Score = 35.8 bits (81), Expect = 9.7, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 12/82 (14%) Query: 54 HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A + GAT Y + PC CA II CGI RVV + Sbjct: 86 HAEQNAICQAAKRGISIDGATLYCKMTPCR------TCAMLIINCGIVRVVA---EKRYH 136 Query: 111 VSGRGLQWLSQKGIIVDRMMES 132 S ++ + GII++ + +S Sbjct: 137 DSADTIEMFKKAGIILEHISDS 158 >gi|291003336|ref|ZP_06561309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] Length = 250 Score = 35.8 bits (81), Expect = 9.8, Method: Compositional matrix adjust. Identities = 43/193 (22%), Positives = 80/193 (41%), Gaps = 15/193 (7%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y + +R + + S D + + G S ++ + + L+R SD +LVG+ T Sbjct: 21 YAYPEALERPWVRVNFVSSLDGAVTIKG-RSRGLSAPEDQRVLGLIRDLSDVVLVGVSTA 79 Query: 201 LADD----------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 + + E RL GL P+ ++ L +DS ++ L+ P+++ + Sbjct: 80 VLEGYRGVKRTEVRSERRSRL-GLSPVPPIALVTR-SCSLPVDSPLLTDTLVPPIVLTCQ 137 Query: 251 NDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 A +++ + DL L L RG+ + EGG + S + S LV Sbjct: 138 AAPADRRAALADAGADVVVAGDEQVDLPAALAALDERGLRRIGCEGGPTLFGSLVESDLV 197 Query: 309 DSIILYRSQIVIG 321 D + L S ++ G Sbjct: 198 DELCLTMSPLLAG 210 >gi|328948242|ref|YP_004365579.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens DSM 2489] gi|328448566|gb|AEB14282.1| CMP/dCMP deaminase zinc-binding protein [Treponema succinifaciens DSM 2489] Length = 165 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 12/82 (14%) Query: 54 HAEVQALEEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 HAE A+ +A + GAT Y + PC CA II CGI+RVV + Sbjct: 86 HAEQNAICQAAKRGISIDGATVYCKMTPCR------TCAMLIINCGIKRVVC---EKHYH 136 Query: 111 VSGRGLQWLSQKGIIVDRMMES 132 ++ ++ GI ++ + +S Sbjct: 137 DEEDSMKMFAEAGIKIEHLEDS 158 >gi|168206176|ref|ZP_02632181.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] gi|170662306|gb|EDT14989.1| cytidine/deoxycytidylate deaminase family protein [Clostridium perfringens E str. JGS1987] Length = 143 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEAR-----GATAYVTLEPCSH 81 V +IVK+G +I R T HAE+ A+ EA + G YVTLEPC Sbjct: 20 VGAVIVKNGEIIARAHNLKETLKDPTAHAEILAIREACNKLNNWRLHGCEMYVTLEPC-- 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 P CA I++ + ++ + D +G Sbjct: 78 ----PMCAGAILQSRLSKIYIGTFDDTTGAAG 105 >gi|170725917|ref|YP_001759943.1| zinc-binding CMP/dCMP deaminase [Shewanella woodyi ATCC 51908] gi|169811264|gb|ACA85848.1| CMP/dCMP deaminase zinc-binding [Shewanella woodyi ATCC 51908] Length = 169 Score = 35.8 bits (81), Expect = 10.0, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 15/92 (16%) Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAG---EEAR--GATAYVTLEPCSH 81 V ++VK+ VI G + ++ HAE+Q L +AG E R T YVTLEPC+ Sbjct: 29 VGAILVKNDEVISAGFNFCIGSHDPSAHAEMQCLRQAGKVIENYRLLDTTLYVTLEPCA- 87 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 CA ++ + R+V D +G Sbjct: 88 -----MCAGAMVHSRVSRLVFGASDAKTGAAG 114 Searching..................................................done Results from round 2 >gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] gi|254040025|gb|ACT56821.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] Length = 364 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 364/364 (100%), Positives = 364/364 (100%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL Sbjct: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS Sbjct: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK Sbjct: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA Sbjct: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH Sbjct: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC Sbjct: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 Query: 361 LQEL 364 LQEL Sbjct: 361 LQEL 364 >gi|315122228|ref|YP_004062717.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495630|gb|ADR52229.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 367 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 268/363 (73%), Positives = 313/363 (86%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M +SS D RFMS ALRFS W GLT TNPSVACLIVKDGI++GRGVTAYGG PHAE QAL Sbjct: 1 MSLSSLDERFMSVALRFSCWGTGLTGTNPSVACLIVKDGIIVGRGVTAYGGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EEAGE ARGATAYVTLEPCSHYG++PPCA+FI+E GI RVVVCV DPDVRVSGRGLQWLS Sbjct: 61 EEAGERARGATAYVTLEPCSHYGQAPPCAKFIVEAGISRVVVCVIDPDVRVSGRGLQWLS 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 QKGI+VD+++E EG+ L AYLTRQV+ RSH+ LK+A+SQDNMIG+ GCG+V ITG IS+ Sbjct: 121 QKGIVVDKVLEREGERVLGAYLTRQVKNRSHVILKLALSQDNMIGIVGCGNVSITGLISR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVHLLRAQSDAILVGIGTV++D+PELTCRL+GL++ SP+RIILDPH K+SL S+I++TA Sbjct: 181 KQVHLLRAQSDAILVGIGTVISDNPELTCRLDGLKDRSPIRIILDPHLKISLSSRIMQTA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 LAPVIIVTE +D LAL+ +KKN++I++C+CRDLKKLL IL RG+TSLLVEGGA VA Sbjct: 241 SLAPVIIVTEKNDCNLALSIKKKNVDIVHCNCRDLKKLLAILADRGITSLLVEGGARVAR 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SF+ S VDSIILY+SQ +IG GI SPLEE ++E NFMCVRRD FGSDVC EY+ KN C Sbjct: 301 SFMMSGFVDSIILYKSQKIIGTSGIASPLEEEFIENNFMCVRRDGFGSDVCFEYVRKNFC 360 Query: 361 LQE 363 LQE Sbjct: 361 LQE 363 >gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mahella australiensis 50-1 BON] gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Mahella australiensis 50-1 BON] Length = 363 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 134/359 (37%), Positives = 192/359 (53%), Gaps = 9/359 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL +R G T+ NP V +IVK G +IG G G PHAE+ AL EAGE A Sbjct: 4 EIFMQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREAGEGA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG+T YVTLEPCSH+GR+PPCA +++ G++ VV+ ++DP+ RV+GRG+ L Q GI ++ Sbjct: 64 RGSTVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKVI 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +ME E + ++ + K A++ D I A S IT +S+ VH Sbjct: 124 TGIMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVHWW 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + A+L GIGTVLADDP LT RL + E P+RII D K LDS ++ + Sbjct: 184 RYRVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAPTI 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + + DP F+ K ++I D + DL +L+ L R + S+L+EGG +A S Sbjct: 244 MATSWSADPSKIETFKSKGADVIITDGKDKVDLVQLMRELHKREIDSVLIEGGPTLAASA 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGK 357 I LVD +++ + +IG G+ + G V F DV +E K Sbjct: 304 IEEGLVDKAMVFIAPKLIGGKGLSALSGNGIARMADAWQLSGVSVKRFEDDVLIEGYLK 362 >gi|126207866|ref|YP_001053091.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae L20] gi|1173516|gb|AAA86522.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae] gi|126096658|gb|ABN73486.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 410 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 46 TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 105 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G Sbjct: 106 KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 165 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + +V+ +++ E + KR ++ +K A++ D I S ITG ++ + Sbjct: 166 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 225 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 226 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 283 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG+++ Sbjct: 284 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 343 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L+ Sbjct: 344 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 403 Query: 354 YI 355 Y+ Sbjct: 404 YV 405 >gi|331270609|ref|YP_004397101.1| riboflavin biosynthesis protein RibD [Clostridium botulinum BKT015925] gi|329127159|gb|AEB77104.1| riboflavin biosynthesis protein RibD [Clostridium botulinum BKT015925] Length = 372 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 196/372 (52%), Gaps = 14/372 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M A+ S+ +G T NP V +IVKD +IG G Y G HAE+ AL+ E Sbjct: 1 MDLRYMKRAINLSKLGIGHTYPNPLVGAVIVKDNKIIGEGYHQYFGENHAEINALKNVKE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYG++PPCA I++ GI++V++ + DP+ V+GRG++ L GI Sbjct: 61 DVNGATMYVTLEPCSHYGKTPPCANAIVKSGIKKVIIGMRDPNSLVAGRGIRILKNNGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++E E K ++ K LK A++ D I S I+ IS+ VH Sbjct: 121 VIQGVLEEEIKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEISRQYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + I+VGIGT+L D+P LT RLN + RII+D ++ ++SK++ A Sbjct: 181 EIRHKVAGIMVGIGTILKDNPSLTTRLNNKKGRDSTRIIIDSKGRIPVESKVLNLESEAN 240 Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 IIVT R K +I D DLK L+ L R + S+L+EGGA + Sbjct: 241 TIIVTTELASREKIEVIRSKGAEVIITPLCDDRVDLKYLMRELGERNIDSVLLEGGAELN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353 +S +N +VD +I + S +IG +P+ N ++ F D+ +E Sbjct: 301 YSALNEGIVDKVISFISPKIIGGKEAKTPVGGVGKSAISECVNLENIKVSQFEEDIVIEG 360 Query: 354 YIG--KNLCLQE 363 YI K LC QE Sbjct: 361 YIKGEKKLCSQE 372 >gi|150388845|ref|YP_001318894.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens QYMF] gi|149948707|gb|ABR47235.1| riboflavin biosynthesis protein RibD [Alkaliphilus metalliredigens QYMF] Length = 366 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 128/361 (35%), Positives = 200/361 (55%), Gaps = 12/361 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A+ ++ G T+ NP V +IVK+ VIG G Y G PHAEV A A E+ + Sbjct: 4 QYMRKAIELAKKGTGHTNPNPLVGAVIVKNNKVIGEGYHHYYGGPHAEVDAFNNATEDVK 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I+E GI +VV+ + DP+ V+G G+ L + GI ++ Sbjct: 64 GATMYVTLEPCSHYGKTPPCAKAIVEKGIAQVVIAMRDPNPLVAGNGIGILRESGIEVIS 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ESE K ++ + LK A++ D I A S IT S+ VH +R Sbjct: 124 EVLESEAKNLNEIFVKYITTEMPFCILKTAMTLDGKIATATGDSKWITNEESRQYVHEIR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q +I+VGIGTVL DDP+LT RL+ + P+R+I+D K L +++++ + II Sbjct: 184 HQVSSIMVGIGTVLVDDPQLTTRLHNQEGSDPIRVIVDTEAKTPLWAQVLQLSSKVRTII 243 Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE DP A +K +I + DLK L+ L +G+ S+L+EGGA + S Sbjct: 244 ATTEKADPNKIKALEEKGAEVIIIPLKNNQVDLKCLIQQLGAKGIDSVLIEGGATLNDSA 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 + +VD ++ + + ++G +P+ ++ ++ FG D+ +E Y+G Sbjct: 304 LQEGIVDKVVSFIAPKIVGGAKAKTPVGGDGIKYMKDAIQLTDIQVRKFGQDIMIEGYLG 363 Query: 357 K 357 K Sbjct: 364 K 364 >gi|8039802|sp|P50853|RIBD_ACTPL RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase Length = 376 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 12 TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 71 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G Sbjct: 72 KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 131 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + +V+ +++ E + KR ++ +K A++ D I S ITG ++ + Sbjct: 132 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 192 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 249 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG+++ Sbjct: 250 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 309 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L+ Sbjct: 310 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 369 Query: 354 YI 355 Y+ Sbjct: 370 YV 371 >gi|261493709|ref|ZP_05990228.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494376|ref|ZP_05990870.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310025|gb|EEY11234.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310709|gb|EEY11893.1| riboflavin biosynthesis protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 403 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 185/364 (50%), Gaps = 12/364 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + + D ++M+ A+ + G TS NP V C+IVK+G +I G G HAE A+ Sbjct: 35 IKMHMTDVQYMAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAI 94 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E+ GATAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L Sbjct: 95 LNCEEDLTGATAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLR 154 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI +V+ M +E + KR ++ LK ++ D I S ITG + Sbjct: 155 AAGIEVVEDFMRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAA 214 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V R + AI+VG+ TVLADDP L R+ P+RI+ D + LDS++++T Sbjct: 215 RANVQKSRHEYSAIMVGVETVLADDPMLNSRME--NAKQPVRIVCDSQLRTPLDSQLVQT 272 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 A II T N+D + + I+ R DL LL L G+ SLL+EGG Sbjct: 273 ARQYRTIIATLNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGG 332 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDV 350 + + S + LV+ + Y + +IG +P+ + + V+ + G D+ Sbjct: 333 SQLNFSVLEQGLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDI 392 Query: 351 CLEY 354 L+Y Sbjct: 393 LLDY 396 >gi|313114897|ref|ZP_07800395.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf. prausnitzii KLE1255] gi|310622774|gb|EFQ06231.1| riboflavin biosynthesis protein RibD [Faecalibacterium cf. prausnitzii KLE1255] Length = 374 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 190/367 (51%), Gaps = 12/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + KR ++++K A++ D I S ITG I++N V Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPYVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG + S Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + S +V + Y + + G +P+E + R + G D +E Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360 Query: 357 KNLCLQE 363 + CL E Sbjct: 361 EYPCLPE 367 >gi|303252625|ref|ZP_07338788.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302648593|gb|EFL78786.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 379 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 12/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 15 TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 74 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G Sbjct: 75 KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 134 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + +V+ +++ E + KR ++ +K A++ D I S ITG ++ + Sbjct: 135 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 194 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 195 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 252 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG+++ Sbjct: 253 YRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L+ Sbjct: 313 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 372 Query: 354 YI 355 Y+ Sbjct: 373 YV 374 >gi|160944654|ref|ZP_02091881.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii M21/2] gi|158443838|gb|EDP20842.1| hypothetical protein FAEPRAM212_02168 [Faecalibacterium prausnitzii M21/2] Length = 374 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 189/367 (51%), Gaps = 12/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + KR +++K A++ D I S ITG I++N V Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG + S Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + S +V + Y + + G +P+E + R + G D +E Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360 Query: 357 KNLCLQE 363 + CL E Sbjct: 361 EYPCLPE 367 >gi|190149675|ref|YP_001968200.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914806|gb|ACE61058.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 379 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 191/362 (52%), Gaps = 12/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 15 TMTDLDYMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHC 74 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q G Sbjct: 75 KEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAG 134 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + +V+ +++ E + KR ++ +K A++ D I S ITG ++ + Sbjct: 135 VEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARAR 194 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 195 VQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAKE 252 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I T DD FR + ++ C R DL+ LL L + SLL+EGG+++ Sbjct: 253 YRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSL 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L+ Sbjct: 313 NFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILLD 372 Query: 354 YI 355 Y+ Sbjct: 373 YV 374 >gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509] Length = 367 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TV+ADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ + +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQSGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli HS] gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS] Length = 367 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|238921881|ref|YP_002935395.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium eligens ATCC 27750] gi|238873553|gb|ACR73261.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium eligens ATCC 27750] Length = 373 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 114/363 (31%), Positives = 180/363 (49%), Gaps = 11/363 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M A+ ++ G + NP V +IVKD +IG G G HAE AL Sbjct: 8 NFSKQDEFYMRRAIELAKNGTGWVNPNPLVGAVIVKDDRIIGEGWHRKYGELHAERDALS 67 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ GAT YVTLEPC H+G+ PPC + +++ GI RVV+ DP+ VSG+G+++L + Sbjct: 68 RCMEDTSGATIYVTLEPCCHHGKQPPCTEALVQAGISRVVIGSMDPNPLVSGKGVKYLEE 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + E + + K ++ +K A + D I S ITG ++ Sbjct: 128 HGIKVEGCVCNEECLAMNYVFFHYIRNKEPYVVMKTAQTLDGKIATYKGLSKWITGEQAR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKIIKT 239 VH R + AI+VG+GTV+AD+P L CR + H+P+RII D + LDS+I+K+ Sbjct: 188 ENVHADRHRYAAIMVGVGTVIADNPMLDCRSTAISNPHNPVRIICDSRLRTPLDSRIVKS 247 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295 A P II T + D + +I DLK+L+ IL +G+ S+++EGG Sbjct: 248 AGQIPTIIATCSTDSDRKSLYENAGCEVIITKESEQHVDLKELMNILGEKGIDSVILEGG 307 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 + S + + +V+ + Y + + G + +E + G D+ Sbjct: 308 GTLNFSALQAGIVNRVQTYIAPKIFGGVDSKTAVEGQGIANVDEAYRLRNKTVRLLGDDI 367 Query: 351 CLE 353 +E Sbjct: 368 LIE 370 >gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042] Length = 367 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|307249603|ref|ZP_07531590.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858458|gb|EFM90527.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 364 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 191/363 (52%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + K ++ +K A++ D I S ITG ++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|295104352|emb|CBL01896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Faecalibacterium prausnitzii SL3/3] Length = 374 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 188/367 (51%), Gaps = 12/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVVKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I++ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILDAGIHRVVVGSADPNPLVAGKGIAILRAHGIDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + KR +++K A++ D I S ITG I +N V Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIVRNHVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG + S Sbjct: 241 ILATCCGDPEKQAAYQQAGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + S +V + Y + + G +P+E + R + G D +E Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360 Query: 357 KNLCLQE 363 + CL E Sbjct: 361 EYPCLPE 367 >gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88] Length = 367 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|317131626|ref|YP_004090940.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense YUAN-3] gi|315469605|gb|ADU26209.1| riboflavin biosynthesis protein RibD [Ethanoligenens harbinense YUAN-3] Length = 367 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VKDG VIG G G HAE AL E Sbjct: 3 DETYMKLALEYAEKGCGWVNPNPMVGAVVVKDGRVIGTGWHRRYGELHAERNALASCTEP 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG++PPC I+E GI RVVV DP+ V+G+G++ L Q+GI + Sbjct: 63 PQGATLYVTLEPCCHYGKTPPCTDAILESGIHRVVVGSVDPNPLVAGKGIRILRQRGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ + + ++ +K A++ D I S ITG ++ + Sbjct: 123 AEGVLGDACTGINEVFFHFIRTRMPYVVMKYAMTMDGKIATCSGQSKWITGETARRRTQE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + I+VGIGTVL DDP LTCRL +P+RI+ D + L+++I++ AP Sbjct: 183 DRHRYSGIMVGIGTVLTDDPLLTCRLP--DGRNPVRIVCDSRLRTPLNAQIVRITGEAPT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+VT + D LA +R ++ + DL+ L+T L +G+ S+L+EGG A+ S Sbjct: 241 ILVTCSRDEALAYPYRDAGCEVLTLPAKDGHVDLRALMTALGKKGIDSVLLEGGGALNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356 + S +V+ + Y + + G SP+ +E R G D+ LE Sbjct: 301 ALQSGIVNKVQAYVAPKLFGGINAKSPVAGMGVESPEQAFRLASPQVTRLGEDILLESEV 360 Query: 357 KNLCLQE 363 + C QE Sbjct: 361 LS-CSQE 366 >gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019] gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli SE11] gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli IAI1] gi|260853634|ref|YP_003227525.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O26:H11 str. 11368] gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O111:H- str. 11128] gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088] gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7] gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1] gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1] gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271] gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019] gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11] gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli IAI1] gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O26:H11 str. 11368] gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O111:H- str. 11128] gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088] gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1] gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7] gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1] gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1] gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14] gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli 1357] gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120] gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3] gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271] Length = 367 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella boydii CDC 3083-94] gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94] Length = 367 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|46143613|ref|ZP_00134868.2| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247384|ref|ZP_07529431.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307260857|ref|ZP_07542543.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306856081|gb|EFM88237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306869424|gb|EFN01215.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 364 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 194/363 (53%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I S ITG ++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|307262983|ref|ZP_07544605.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871609|gb|EFN03331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 364 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 192/363 (52%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I S ITG ++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|166030622|ref|ZP_02233451.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC 27755] gi|166029624|gb|EDR48381.1| hypothetical protein DORFOR_00288 [Dorea formicigenerans ATCC 27755] Length = 377 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 19/375 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G T+ NP V +IVKDG +IG G A G HAE A+ E Sbjct: 5 DQDYMKRAIELAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHARCGELHAERNAIASLTES 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + I+E I++VV+ DP+ +V+G+G + L G+ + Sbjct: 65 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIKKVVIGSRDPNPKVAGKGAKILRDAGVAV 124 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M + + K ++ +K A++ D I S IT ++ +V Sbjct: 125 VEDFMRDKCDELNPIFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITQEAARREVQY 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R + I+VGIGTVLADDP L R+ GL SP+RII D ++ LDS+I+K+A Sbjct: 185 MRHRYMGIMVGIGTVLADDPMLNVRVEGL--KSPVRIICDSKLRIPLDSQIVKSAREYRT 242 Query: 246 IIVTENDDPV--LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + V + + I++C +LK L+ L + S+L+EGG + Sbjct: 243 IVAYADLENVEKKKEILQTMGVEIVFCPDMKKHVNLKHLMEYLGKENIDSILLEGGGTLN 302 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDV---- 350 S + + +V + + + + G G +P++ +E G D+ Sbjct: 303 DSALRAGVVQEVQAFIAPKIFGGAGSRTPVDGIGIELPSQAAVLKFKDICQIGEDLKITC 362 Query: 351 -CLEYIGKNLCLQEL 364 L + LCLQEL Sbjct: 363 QVLRKEQEELCLQEL 377 >gi|303249744|ref|ZP_07335948.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251932|ref|ZP_07533833.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302651311|gb|EFL81463.1| riboflavin biosynthesis protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860624|gb|EFM92636.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 364 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 192/363 (52%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSNLLIERGIKKVFIGSSDPNPLVAGRGANQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + K ++ +K A++ D I S ITG ++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKCPYVLMKYAMTADGKIATGSGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 ++ S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LSFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|260893814|ref|YP_003239911.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4] gi|260865955|gb|ACX53061.1| riboflavin biosynthesis protein RibD [Ammonifex degensii KC4] Length = 370 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 137/367 (37%), Positives = 192/367 (52%), Gaps = 12/367 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D FM AL + G TS NP V ++VK+G VI G G PHAE++AL Sbjct: 1 MENLKEDEFFMRRALELALKARGRTSPNPMVGAVLVKEGRVIAEGYHRRAGMPHAEIEAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGEEARGAT YV LEPC H GR+ PC + II GI+RVVV ++DP+ V+G+G++ L Sbjct: 61 RAAGEEARGATLYVNLEPCCHVGRTGPCTEAIIAAGIKRVVVAMEDPNPLVAGKGIKILR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ + ++E E + ++ + + LK+A++ D I + + ITG + Sbjct: 121 EAGLEVTVGVLEQEARRLNEVFVKFITTREPFVVLKVAMTLDGKIATSTGEARWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LR DAILVG GTVL DDP LT RL G P+R+IL L L ++++ Sbjct: 181 RAYVHELRDTYDAILVGKGTVLKDDPSLTARLPGA--RDPVRVILSSLADLPLSARVLNL 238 Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGG 295 AP + VTE P A + K ++ C DLK LL L R +T +LVEGG Sbjct: 239 NSSAPTWVAVTEQAPPSRIKALQGKGAEVLVCGPGPQVDLKLLLKELGRREITGVLVEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDV 350 V SF+ +RLVD +I + + G P P+ +E +R G+D Sbjct: 299 GTVNASFLANRLVDKVIWMVAPKIFGGTKAPGPVGGEGVEHPDRALRLKDLTVKKLGADF 358 Query: 351 CLEYIGK 357 C E + Sbjct: 359 CFEGYPE 365 >gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253] Length = 367 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ +F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A] gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7] gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A] gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7] gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli EC4100B] Length = 367 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVILMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia fergusonii ECD227] Length = 367 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ +F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1] Length = 367 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UMN026] gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412] gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302] gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1] gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli UMN026] gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412] gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302] gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1] Length = 367 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G I LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|295102179|emb|CBK99724.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Faecalibacterium prausnitzii L2-6] Length = 374 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 187/367 (50%), Gaps = 12/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++ K+G +IG+G G HAE AL E+ Sbjct: 3 DKEYMRLALQLAKKGCGWTSPNPMVGAVVAKEGRIIGQGWHQRYGQAHAERNALASCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC HYG+ PPC I+ GI RVVV DP+ V+G+G+ L GI + Sbjct: 63 PQGATLYVTLEPCCHYGKQPPCVDAILGAGIHRVVVGSADPNPLVAGKGITILRAHGIDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +++ E + KR +++K A++ D I S ITG I++N V Sbjct: 123 TENVLQEECDALNKVFFHYITTKRPFVSMKYAMTMDGKIATYTGASKWITGEIARNHVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + I+VG+GT+LADDP LTCR+ G P+RII D H + L S+++ TA P Sbjct: 183 QRHRFRGIMVGVGTILADDPLLTCRIEG--GRDPVRIICDTHLRTPLQSQVVMTAKQVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T DP A+++ ++ +C +L +L+ L + S+L+EGG + S Sbjct: 241 ILATCCGDPEKQAAYQQDGCRVLCLEAHCGHVNLLQLMEQLGQEQIDSILLEGGGTLNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + S +V + Y + + G +P+E + R + G D +E Sbjct: 301 ALESGIVQQVQAYIAPKLFGGRDAKAPIEGAGVPLPDAAFRLKNSRLEQLGKDFLIESEV 360 Query: 357 KNLCLQE 363 + CL E Sbjct: 361 EYPCLPE 367 >gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863] gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v] Length = 367 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TV+ADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDNQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ + +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQSGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADVPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1] gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1] Length = 367 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W] gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W] gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli W] gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11] gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167] Length = 367 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D ++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia fergusonii ATCC 35469] gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia fergusonii ATCC 35469] Length = 367 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRSLLIPEHNGHLDLVLLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ +F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC 29220] gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC 29220] Length = 367 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 190/367 (51%), Gaps = 20/367 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP+LT R L E P+RI+LD H +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ IV DD ++I + + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIVRTQDD-TRHWPESVRSIKVPEHNGHLDLVVLMMQLGKQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G + LE+ +F G Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGP 358 Query: 349 DVCLEYI 355 DVCL I Sbjct: 359 DVCLHLI 365 >gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143] gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143] Length = 367 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|134299939|ref|YP_001113435.1| riboflavin biosynthesis protein RibD [Desulfotomaculum reducens MI-1] gi|134052639|gb|ABO50610.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfotomaculum reducens MI-1] Length = 376 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 134/375 (35%), Positives = 194/375 (51%), Gaps = 15/375 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL + G TS NP V ++VKDG V+G+G A G HAEV AL +AG Sbjct: 2 DQDRHYMNMALELAAKARGRTSPNPMVGAVLVKDGEVVGKGFHAKAGGAHAEVVALADAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A+GAT YVTLEPC H+G++ PC + + + G++RVV + DP+ V+G+GL L GI Sbjct: 62 DRAKGATVYVTLEPCCHHGKTGPCTEALKKAGVKRVVAAMTDPNPLVAGKGLNILKDAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E K ++ K I LK A S D I A S ITG ++N Sbjct: 122 EVVSGLLEEEAKELNEVFIKYITTKIPFIVLKAATSLDGKIATASGESKWITGDTARNYG 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DAILVG+ TVLADDP LT RL + P+RII+D + +KI+ A Sbjct: 182 HRLRDAYDAILVGVNTVLADDPSLTARLPEGRGKDPLRIIVDSMSRTPTSAKILTQESAA 241 Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 II T PV A +I DLKKL+ +L + ++S+L+EGG + Sbjct: 242 HTIIATTQAAPVERRASLMAAGAEVIVVPGEGPGVDLKKLMVLLGEKQISSVLIEGGGKI 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 + S +N+ +VD + + + +IG P P+ ++ V G+D+ + Sbjct: 302 SGSALNAGIVDKVAWFIAPKIIGGDLAPGPVRGEGIQFLKDATKLYKVTVQNLGADILIT 361 Query: 354 YI----GKNLCLQEL 364 G + L EL Sbjct: 362 GYTSKGGDKISLLEL 376 >gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354] gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354] Length = 367 Score = 384 bits (987), Expect = e-105, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D M S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G I LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|153855732|ref|ZP_01996746.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814] gi|149751955|gb|EDM61886.1| hypothetical protein DORLON_02764 [Dorea longicatena DSM 13814] Length = 378 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 120/377 (31%), Positives = 186/377 (49%), Gaps = 22/377 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + IIE I++VV+ DP+ +V+G+G Q L + GI + Sbjct: 63 AEGATIYVTLEPCCHYGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGAQILRESGITV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 123 VQDFMREECDCLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEPARQEVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R + I+ GIGTVLADDP L R+ G SP+RI+ D ++ LDS+I+++A Sbjct: 183 MRHRYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSSLRIPLDSQIVRSAKEYRT 240 Query: 246 IIVTENDDP-----VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 I+ + K ++ + C DLKKL+T L G+ S+L+EGG Sbjct: 241 IVAYAGREENEEITEKIERLHAKGVDTVCCPDEKGQIDLKKLMTYLGNEGIDSILLEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + S + + +V + + + + G +P++ + C G D+ Sbjct: 301 TLNDSALRAGIVKEVHCFIAPKLFGGKNSKTPVQGIGIGLPSEALKLKCTDICRIGEDIR 360 Query: 352 L-----EYIGKNLCLQE 363 + E + CLQE Sbjct: 361 IICQVCEKEQEGPCLQE 377 >gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 55989] gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli 55989] Length = 367 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D ++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299] gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299] Length = 367 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G P LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|307245212|ref|ZP_07527303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307254158|ref|ZP_07536003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258621|ref|ZP_07540356.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306853856|gb|EFM86070.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306862858|gb|EFM94807.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867278|gb|EFM99131.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 361 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 193/362 (53%), Gaps = 14/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I + S ITG +++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EY 354 +Y Sbjct: 357 DY 358 >gi|307256427|ref|ZP_07538209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865057|gb|EFM96958.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 364 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 195/363 (53%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I S ITG +++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR ++++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli E24377A] gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A] Length = 367 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D ++ + Sbjct: 182 RQRAQSYAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1] gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1] Length = 367 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431] Length = 367 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I+ G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|295399034|ref|ZP_06809016.1| riboflavin biosynthesis protein RibD [Geobacillus thermoglucosidasius C56-YS93] gi|312110361|ref|YP_003988677.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1] gi|294978500|gb|EFG54096.1| riboflavin biosynthesis protein RibD [Geobacillus thermoglucosidasius C56-YS93] gi|311215462|gb|ADP74066.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y4.1MC1] Length = 361 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 127/359 (35%), Positives = 191/359 (53%), Gaps = 9/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V ++V G ++G G G PHAEV A+ AGE+ Sbjct: 4 DEQYMRLAIEMAKAGIGQTSPNPIVGAVVVNSGEIVGFGAHLKAGEPHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA +I+ G+RRVV+ DP+ V+G+G++ L GI + Sbjct: 64 AKGATVYVTLEPCSHYGKTPPCADLLIDAGVRRVVIATTDPNPLVAGKGIEKLRNAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 KLGVLKEEADELNRVFFHYIATKTPFVTLKYASSLDGKIATATGESKWITSEAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DAILVG+ TV+AD+P LT RL G +P+RI+LD H + L++ I++ Sbjct: 184 YRAVHDAILVGVDTVIADNPSLTVRLPG-SGKNPIRIVLDTHLRTPLEANILQDGQAETW 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I + KN+ +I ++ +LL +L R +TSL VEGG+ V SF+ Sbjct: 243 LIAGSGVSGEKKKRYESKNVQVISMSTPHINIDELLHVLGERRITSLFVEGGSRVHDSFV 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357 + V+ I+ Y + +IG P+P+ R + G D+ + I K Sbjct: 303 RAGAVNEIVAYFAPKLIGGKQAPTPIGGIGFASMADVMQLQIRRVETIGPDIKIVAIPK 361 >gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli ATCC 8739] gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638] gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1] gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli B str. REL606] gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1] gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70] gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739] gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638] gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1] gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli BL21(DE3)] gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli B str. REL606] gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BL21(DE3)] gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1] gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70] gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489] gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007] Length = 367 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|239827589|ref|YP_002950213.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70] gi|239807882|gb|ACS24947.1| riboflavin biosynthesis protein RibD [Geobacillus sp. WCH70] Length = 361 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 127/359 (35%), Positives = 192/359 (53%), Gaps = 9/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V ++VKDG ++G G G HAEV A+ AGE+ Sbjct: 4 DEQYMRLAIEIAKAGIGQTSPNPVVGAVVVKDGEIVGFGAHLKAGELHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G+T YVTLEPCSHYG++PPCA ++E G++RVV+ DP+ V+G+G++ L GI + Sbjct: 64 AKGSTVYVTLEPCSHYGKTPPCADLLVETGVQRVVIATTDPNPLVAGKGIEKLRSAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +TLK A S D I S IT ++ VH Sbjct: 124 KLGVLKEEADELNRVFFHYIAAKTPFVTLKYASSLDGKIATTTGESKWITSEAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DAILVG+ TV+AD+P LT RL +P+RI+LD H + LD+ I+ Sbjct: 184 YRAVHDAILVGVNTVIADNPSLTVRLPEG-GKNPIRIVLDTHLRTPLDANILNDGQAETW 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+V + K+N+ II D+ +LL +L + +TSL VEGG+ V SF+ Sbjct: 243 IVVGSEISVEKRKRYEKENVQIISMKKPHIDIDELLRVLGEKRITSLFVEGGSHVHDSFV 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 ++ V+ I+ Y + +IG P+P+ R + G D+ + I K Sbjct: 303 RAKAVNEIVAYFAPKIIGGKQAPTPIGGIGFAGMADVMQLEIRRVETIGPDIKIVAIPK 361 >gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. MG1655] gi|89107284|ref|AP_001064.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. W3110] gi|170080000|ref|YP_001729320.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. DH10B] gi|238899702|ref|YP_002925498.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BW2952] gi|256023969|ref|ZP_05437834.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia sp. 4_1_40B] gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1] gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1] gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1] gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1] gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736] gi|140252|sp|P25539|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12] gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli] gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. MG1655] gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli] gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K12 substr. W3110] gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli str. K-12 substr. DH10B] gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli BW2952] gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1] gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1] gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1] gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1] gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1] gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407] gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli DH1] gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520] gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482] gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736] Length = 367 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|253578467|ref|ZP_04855739.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850785|gb|EES78743.1| riboflavin biosynthesis protein [Ruminococcus sp. 5_1_39BFAA] Length = 375 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 185/364 (50%), Gaps = 12/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M AL ++ +G T+ NP V +IVK G VIG+G G PHAE +AL Sbjct: 8 EKDRQYMKMALELAQKGMGFTAPNPMVGAVIVKRGKVIGQGYHRKYGEPHAEREALASCT 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA+ YVTLEPC HYG+ PPC I+E GIRRV++ DP+ VSG+G++ L + GI Sbjct: 68 EQPEGASIYVTLEPCCHYGKQPPCVNAILESGIRRVIIGSSDPNPLVSGKGIRILKEHGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +++ E A+ ++ ++ +K A++ D I S +TG ++ V Sbjct: 128 EVTENVLKEECDKLNEAFFYYIQNQKPYVVMKYAMTMDGKIATYTGASRWVTGEAARMHV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R + I+ G+GTVLADDP LTCRL +P+RII D H + L+S+I+KTA Sbjct: 188 QKQRLKYTGIMAGVGTVLADDPMLTCRLE--NGRNPVRIICDSHLRTPLNSRIVKTASTI 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 P I T + D + ++ + DL +L+ +L + S+L+EGG + Sbjct: 246 PTIFATSSKDQQKIKNYEDMGCKVLDVPEKNGHIDLNRLMELLGAAKIDSILLEGGGTLN 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354 S + S +V + Y + + G +P+E + G D +E Sbjct: 306 WSALESGIVQKVQTYIAPKLFGGESAKTPIEGKGFPDPASAILLKNSEIIRIGDDFLIES 365 Query: 355 IGKN 358 K+ Sbjct: 366 EVKS 369 >gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp. 30_2] gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp. 30_2] Length = 367 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 186/364 (51%), Gaps = 18/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEVEQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP+LT R + L E P+RI+LD +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ IV DDP + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWIVRTEDDPRSWPETVRSLKVPEHNGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G + LE+ +F G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPD 359 Query: 350 VCLE 353 VCL Sbjct: 360 VCLH 363 >gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591] gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591] Length = 367 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++ LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|165975842|ref|YP_001651435.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875943|gb|ABY68991.1| riboflavin-specific deaminase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 364 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 193/363 (53%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLFGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGAGQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I S ITG +++ Sbjct: 119 GVEVVEGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVCDDLQKVEQFRPLGVEVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|33152274|ref|NP_873627.1| riboflavin biosynthesis protein RibD [Haemophilus ducreyi 35000HP] gi|33148497|gb|AAP96016.1| riboflavin-specific deaminase [Haemophilus ducreyi 35000HP] Length = 368 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 12/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A+ + G T+ NP V C+IVK+ +I G G HAE A+ ++ Sbjct: 3 DVDYMARAIALAEQARGWTNPNPLVGCVIVKNDQIIAEGYHQKVGEWHAERNAILNCQQD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GATAYVTLEPC H+GR+PPC +IE GI +V V DP+ V+G+G++ L GI + Sbjct: 63 LTGATAYVTLEPCCHHGRTPPCTDLLIERGINKVFVGSRDPNPLVTGKGIKQLQAAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + M + ++ LK A++ D I A S I+G +++ V + Sbjct: 123 ITDFMREACDQLNPIFFHYMQTTSPYVLLKYAMTADGKIATATGESKWISGELARQNVQI 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R Q AI+VG+GTVLAD+P L R+ P+R++ D H + L ++++TA P Sbjct: 183 TRHQYSAIMVGVGTVLADNPMLNSRMP--NAKQPIRVVCDSHLRTPLACQLVQTARQYPT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T + D + + II C DL LL L + S+L+EGG+ + S Sbjct: 241 IIATASTDSTKIAQLKAFGVQIIQCKVANKQVDLVDLLAKLGAMQIDSVLLEGGSTLNFS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 + + +V+ I Y + ++G SP+ + + N Y G D+ L+Y Sbjct: 301 ALKAGVVNRIHCYIAPKLLGGSTAKSPIGGAGILQLAEAVNLTLKSTQYIGDDILLDY 358 >gi|153811505|ref|ZP_01964173.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174] gi|317501334|ref|ZP_07959537.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 8_1_57FAA] gi|149832246|gb|EDM87331.1| hypothetical protein RUMOBE_01897 [Ruminococcus obeum ATCC 29174] gi|316897298|gb|EFV19366.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 8_1_57FAA] Length = 395 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 19/374 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+ GIGTVLADDP L R+ G SP+RI+ D ++ S+I+K+A Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 260 Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + + IYC DLKKL+ L RG+ S+L+EGG + Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 S + + +V + + + + G +P+E +E V Y G D+ ++ Sbjct: 321 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380 Query: 355 -----IGKNLCLQE 363 + CLQE Sbjct: 381 QVCDKKQEESCLQE 394 >gi|307244664|ref|ZP_07526768.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis DSM 17678] gi|306492045|gb|EFM64094.1| riboflavin biosynthesis protein RibD [Peptostreptococcus stomatis DSM 17678] Length = 372 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 198/374 (52%), Gaps = 18/374 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 + ++MS A+ ++ G T+ NP V +IVKDG V+G+G + GC HAE +AL++ Sbjct: 1 MEEKYMSMAIELAKKACGYTNPNPMVGAVIVKDGQVLGKGYHTWCGCLHAEREALKDCQS 60 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G GAT YVTLEPC HYG++PPC + IIE GI +VVV DP+ +V+G+G+Q L Sbjct: 61 RGVTVTGATMYVTLEPCCHYGKTPPCTEAIIENGIAKVVVGSLDPNPKVAGKGIQILKDH 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V +ME E ++ K+ + +K A++ D I S ITG ++ Sbjct: 121 GINVVTGVMEKECDDLNEVFMHYIKNKKPFVVMKYAMTADGKIATRTGKSQWITGPEARG 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH R + I+VGIGTVLADDP L CRL SP RII D ++ +DS I++TA Sbjct: 181 QVHKDRHRYAGIMVGIGTVLADDPTLNCRLE--DGLSPTRIICDTSLRIPMDSNIVRTAK 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 II T + D ++ + I+ D DL L+ + G+ S+L+EGG Sbjct: 239 TYDTIIATRSKDNEKIRKLKEASCQILVQDGQADRIDLVDLMDKVGSMGLDSVLLEGGGQ 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 + S + + +V+ + +Y + G SP+ ++ K + FG D+ + Sbjct: 299 LNWSALEAGIVNKVQVYIGNKIFGGNDAKSPVGGYGVDLPDQAKRLKLTGLEKFGPDLLI 358 Query: 353 EYIGKN---LCLQE 363 EY +N C QE Sbjct: 359 EYRVENEVVECSQE 372 >gi|256020381|ref|ZP_05434246.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella sp. D9] gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shigella sp. D9] gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shigella sp. D9] Length = 367 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|323705867|ref|ZP_08117439.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium xylanolyticum LX-11] gi|323534863|gb|EGB24642.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium xylanolyticum LX-11] Length = 360 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 13/361 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL+ ++ VG T+ NP V +I+KDG +IG G Y G PHAE+ AL+ A E+ Sbjct: 2 EKYMKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT YVTLEPC H+G++PPC +I+ GI+ V + ++DP+ V+GRG++ L + G+ + Sbjct: 62 NGATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVY 121 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E + ++ + ++ LK A++ D I S IT S+ VH + Sbjct: 122 TGLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKV 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R AI+VGI TV+ D+P LT RL G +P+R+I+D H ++ LD+ +I +I Sbjct: 182 RGSVMAIMVGINTVIKDNPHLTVRLQGY--KNPLRVIVDSHGRIPLDANVIIDKSAKTLI 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T+ A + ++++ + +D L KL+ L RG+ S+L+EGG + +S Sbjct: 240 ATTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 + +VD ++ Y + +IG +P+E + + F D+ +E YI Sbjct: 300 LKEGIVDKVMFYIAPKIIGGSNSLTPVEGDGIALIKDAIMIEKIDIKKFDDDILIEGYIK 359 Query: 357 K 357 K Sbjct: 360 K 360 >gi|118479310|ref|YP_896461.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis str. Al Hakam] gi|229186356|ref|ZP_04313521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1] gi|118418535|gb|ABK86954.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis str. Al Hakam] gi|228597150|gb|EEK54805.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BGSC 6E1] Length = 379 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|47568170|ref|ZP_00238874.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241] gi|47555160|gb|EAL13507.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9241] Length = 370 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 193/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ K + G D+ + ++ Sbjct: 302 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARS 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTECLQEL 370 >gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella dysenteriae CDC 74-1112] Length = 367 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ V+ Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVD 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIHHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|218437502|ref|YP_002375831.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424] gi|218170230|gb|ACK68963.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7424] Length = 362 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 123/356 (34%), Positives = 191/356 (53%), Gaps = 8/356 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SSFD M + +R G TS NP V +IVKDG VIG G G PHAEV AL++A Sbjct: 3 SSFDREMMQHCINLARQAAGKTSPNPMVGAVIVKDGQVIGEGFHPKAGQPHAEVFALKQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+A+GAT Y++LEPC+HYGR+PPC + +IE + +VV+ + DPD RVSG G++ L + G Sbjct: 63 AEQAKGATIYISLEPCNHYGRTPPCTEALIEAQVNKVVIGMIDPDPRVSGSGVKRLQEAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + E + ++ R + K+ LK A++ D I S ITG S+ Sbjct: 123 IEVVVGVEEDACRRLNEGFIHRVLSKKPFGILKYAMTLDGKIATTSGHSAWITGEASRRL 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA+++G TV D+P LT G+ H+P+R+++ L L++ + +T+ + Sbjct: 183 VHHLRASCDAVIIGGNTVRQDNPHLTSH--GVSSHNPLRVVMSRSLNLPLEAHLWETSQV 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ E +P L K+ + +I +++ L RG +S+L E G +A Sbjct: 241 PTLVFTQEGMNPALQKQLLKRQVEVIELKSLSPSEVMHHLYERGFSSVLWECGGILAARA 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I +V ++ + + +IG PSP+ + LEK V +D +E Sbjct: 301 IAEGMVQKVMAFIAPKIIGGNTAPSPVGDLGLEKMTEALQLEKVTFHQIENDFVIE 356 >gi|15614117|ref|NP_242420.1| riboflavin specific deaminase [Bacillus halodurans C-125] gi|10174171|dbj|BAB05273.1| riboflavin specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus halodurans C-125] Length = 368 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 129/358 (36%), Positives = 183/358 (51%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G TS NP V ++VKDG ++G G G PHAEV A+ AGE+ Sbjct: 3 DEQYMKLALALAESARGQTSPNPLVGAVVVKDGQIVGMGAHLKAGEPHAEVHAIRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSHYG++PPCA +IE G+ RVV+ +DP +VSGRG++ L Q GI + Sbjct: 63 AKGATAYVTLEPCSHYGKTPPCADLLIEAGVARVVIATEDPFPKVSGRGIRKLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E + KR ++T+K A + D S IT ++ VH Sbjct: 123 EVGICKQEALDLNRIFFHFVRTKRPYVTIKSATTLDGKTATVQGNSKWITSEQAREDVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + DAILVG+GTVLAD+P LT RL +P+R+ILD + LD +I Sbjct: 183 YRHEHDAILVGVGTVLADNPSLTTRLAAG-GLNPVRVILDRRLRTPLDRNVITDGKAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I E D A +K + + ++ +L L + + S+ VEGGA V SF+ + Sbjct: 242 IFTEERADKAKKKALEEKGVQVFSLPNVSVEAVLETLREKNILSVFVEGGATVNGSFVKA 301 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGKN 358 VD +I Y + V G P+ + + F G DV + K Sbjct: 302 GTVDQVITYLAPKVFGGAAAPTAIGGDGVIAVADALPFEVQEVIQIGPDVKIVARAKE 359 >gi|302875673|ref|YP_003844306.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] gi|307688111|ref|ZP_07630557.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] gi|302578530|gb|ADL52542.1| riboflavin biosynthesis protein RibD [Clostridium cellulovorans 743B] Length = 364 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 190/364 (52%), Gaps = 16/364 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 +M AL ++ G S NP V +IVK+G +IG G G PHAEV A+ + Sbjct: 3 ESYMRRALELAKLGAGRVSPNPMVGAVIVKNGEIIGEGYHKQYGGPHAEVNAIASVSDNG 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E G+T YVTLEPC HYG++PPC + II+ I+ VV+ DP+ V+G+G++ L +GI Sbjct: 63 ELEGSTIYVTLEPCCHYGKTPPCTKAIIDNKIKTVVIGTLDPNPLVAGKGVEILRAEGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++E E +++ K + +K A++ D I + S IT S+ VH Sbjct: 123 VIVGVLEEECLKINESFMKYIKTKTPFVIMKAAMTLDGKIATSTGDSKWITNEESRINVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVL DDPELTCRL G SP RII+D K+ L++K++ Sbjct: 183 KLRNKVSGIMVGINTVLKDDPELTCRLEG--GASPKRIIVDSGLKIPLNAKVLNAKDKVE 240 Query: 245 VIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 VI+ T D ++ + +I + +LKKL+ L V S+L+EGG + Sbjct: 241 VIVATTRKADESKVEVLERQGVKVIIVPEKEQKVNLKKLMEELGNLKVDSVLLEGGGTLC 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353 S + ++D + Y + +IG +P+E + K N +R FG D+ +E Sbjct: 301 FSALEEGIIDKVQFYIAPKIIGGENSKTPVEGVGINKIKDAINVKDLRVSTFGGDILIEG 360 Query: 354 YIGK 357 YI K Sbjct: 361 YIRK 364 >gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella boydii Sb227] gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Shigella boydii Sb227] gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella flexneri CDC 796-83] gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74] Length = 367 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ E Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWGE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|295108673|emb|CBL22626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Ruminococcus obeum A2-162] Length = 375 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 187/374 (50%), Gaps = 19/374 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+ GIGTVLADDP L R+ G SP+RI+ D ++ S+I+K+A Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 240 Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + + IYC DLKKL+ L RG+ S+L+EGG + Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 S + + +V + + + + G +P+E +E V Y G D+ ++ Sbjct: 301 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360 Query: 355 -----IGKNLCLQE 363 + CLQE Sbjct: 361 QVCDKKQEESCLQE 374 >gi|228916750|ref|ZP_04080315.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842937|gb|EEM88020.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 379 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 311 QAKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|323702710|ref|ZP_08114371.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans DSM 574] gi|323532373|gb|EGB22251.1| riboflavin biosynthesis protein RibD [Desulfotomaculum nigrificans DSM 574] Length = 375 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 124/359 (34%), Positives = 185/359 (51%), Gaps = 11/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D FM AL +R G TS NP V ++VKDG V+G+G A G HAEV AL +AG Sbjct: 2 DQDKHFMQMALELARKARGRTSPNPMVGAVVVKDGQVVGQGWHAKAGTAHAEVVALADAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ARGAT YVTLEPC H+GR+ PC + +++ G++RVV + DP+ V+G+GL L G+ Sbjct: 62 EQARGATVYVTLEPCCHHGRTGPCTEALLKAGVKRVVAAMTDPNPLVAGKGLAILRDAGV 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ESE + ++ R + LK A S D I A S ITG ++ + Sbjct: 122 EVQVGVLESEARQLNEIFIKYITTGRPFVVLKAATSLDGKIATATGESKWITGAAARTEG 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DAILVG+ T+LADDP LT RL + P+R+++D + ++++ A Sbjct: 182 HRLRDIYDAILVGVNTILADDPALTTRLPEGRGKDPIRVVVDSTARTPTSARVLIQQSAA 241 Query: 244 PVIIVTENDDPVLALA-FRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298 II T P A ++ DL KL+ +L R +TS+L+EGG + Sbjct: 242 HTIIATTEAAPAERRASLMAAGAEVLVVPGQGPRVDLVKLMELLGQRQITSVLIEGGGKI 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 S + + +VD + + + +IG P P+ + V G D+ + Sbjct: 302 NGSALAAGIVDKVAWFLAPKIIGGDAAPGPVRGAGIMSLNDATKLYNVSLQRVGEDILI 360 >gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1] gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1] gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1] gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1] Length = 367 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GA AYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D ++ + Sbjct: 182 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|42783225|ref|NP_980472.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987] gi|42739153|gb|AAS43080.1| riboflavin biosynthesis protein RibD [Bacillus cereus ATCC 10987] Length = 370 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVYALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG S+ VH Sbjct: 123 TTGVLEAEAILLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEESRADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V D ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IFVGNGVDKKKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARS 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTECLQEL 370 >gi|332652827|ref|ZP_08418572.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium D16] gi|332517973|gb|EGJ47576.1| riboflavin biosynthesis protein RibD [Ruminococcaceae bacterium D16] Length = 368 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 125/357 (35%), Positives = 181/357 (50%), Gaps = 12/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R +G TS NP V ++VKDG +IG+G G HAE +AL+ Sbjct: 3 DTDYMNLALELARRGMGWTSPNPMVGAVLVKDGEIIGQGWHTRYGELHAEREALKNCTGS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G T YVTLEPC H GR PPC Q I++ GI RVVV DDP+ V+G+GL+ L + GI + Sbjct: 63 PAGTTLYVTLEPCCHQGRQPPCTQAILDAGITRVVVGSDDPNPLVAGKGLELLREHGIQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + +R ++ LK A++ D I S +TG ++ +VH Sbjct: 123 ETGVCKQACDALNQVFFHFITTRRPYVVLKYAMTMDGKIATRTGASKWVTGETARKRVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AIL G+GTVLADDP LTCR+ G +P+R+I D H + L+S+I++TA P Sbjct: 183 DRHRYRAILAGVGTVLADDPLLTCRMEG--GRNPIRVICDTHLRTPLESQIVRTAQEVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ T + + + R DL L+ L + S+L+EGG + S Sbjct: 241 ILATACPEEARRFPYEAAGCRVWVLPERKGHVDLAALMDRLGAENIDSVLLEGGGTLNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 + LV + Y + + G G SP+E +E VR G D LE Sbjct: 301 ALEQGLVQKVQAYIAPKLFGGGAAKSPVEGLGVEIPDQAVRLIHTTITPLGDDFLLE 357 >gi|196047192|ref|ZP_03114408.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108] gi|225866095|ref|YP_002751473.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102] gi|196021941|gb|EDX60632.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB108] gi|225786227|gb|ACO26444.1| riboflavin biosynthesis protein RibD [Bacillus cereus 03BB102] Length = 370 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGTDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|147678096|ref|YP_001212311.1| pyrimidine reductase and pyrimidine deaminase [Pelotomaculum thermopropionicum SI] gi|146274193|dbj|BAF59942.1| pyrimidine reductase and Pyrimidine deaminase [Pelotomaculum thermopropionicum SI] Length = 376 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 197/362 (54%), Gaps = 10/362 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL + G TS NP V ++VK+G+V+G+G G PHAE+ AL+EAG Sbjct: 2 DDRYYMNMALELAARARGRTSPNPMVGAVLVKNGVVVGQGYHMKAGTPHAEIIALKEAGN 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 EARGAT YV LEPC HYGR+ PCA +IE G+ RVV + DP+ V+G GL+ + + G+ Sbjct: 62 EARGATLYVNLEPCCHYGRTGPCADAVIEAGVARVVAAMADPNPLVAGGGLKKIKEAGLE 121 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +ME E + A++ +R + K A+S D I S ITG ++ VH Sbjct: 122 VTLGVMEDEARELNEAFIKYVTTRRPFVLAKAALSLDGKIAARTGRSKWITGPAARAYVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DAILVGIGT+LADDP LT RL G P+R+ILD + L++++IK AP Sbjct: 182 QLRDWYDAILVGIGTILADDPSLTARLPGGGGRDPVRVILDSLARTPLNARVIKQKSKAP 241 Query: 245 VII-VTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I VT P A ++ ++ DL +L+ IL + +TS+L+EGGA V Sbjct: 242 TVIAVTAGAPPGRVKALQEAGAQVVVVNSGPRVDLPELMRILAEKEITSVLIEGGAEVHG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 S + +VD + + + +IG P P+ ++ ++ D+C+E Sbjct: 302 SAFAAGIVDKVAWFIAPKIIGGRDAPGPVGGEGVDDPGGALELERIKVSRLDQDICIEGY 361 Query: 356 GK 357 K Sbjct: 362 VK 363 >gi|229146686|ref|ZP_04275053.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24] gi|228636856|gb|EEK93319.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST24] Length = 379 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +K +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIKIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|228987304|ref|ZP_04147425.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772533|gb|EEM20978.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 379 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVANARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|39996788|ref|NP_952739.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA] gi|39983676|gb|AAR35066.1| riboflavin biosynthesis protein RibD [Geobacter sulfurreducens PCA] gi|307634902|gb|ADI84522.2| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter sulfurreducens KN400] Length = 369 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 132/369 (35%), Positives = 199/369 (53%), Gaps = 12/369 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++SF M AL +R +G TS NP V C+IV++G+V+G G G PHAEV AL E Sbjct: 1 MTSFHENMMRRALSLARKGIGKTSPNPVVGCVIVREGVVVGEGWHRKAGTPHAEVHALRE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGA YVTLEPCSH+GR+PPCA ++ G+ RV V + DP+ V G+G+ L Sbjct: 61 AGPLARGADVYVTLEPCSHFGRTPPCADALVAAGVARVFVGMVDPNPTVCGKGITRLEAV 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ E ++ ++ +TLK A++ D A S IT S+ Sbjct: 121 GIQVITGVLGKECRLINEPFVKHVSTGLPFLTLKSALTLDGKTATALGDSRWITNDKSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG+GT+LAD+PELT R ++ +P+RII+D K+ +S+++ L Sbjct: 181 YVHQLRAEVDAVMVGVGTLLADNPELTVR--HVKGKNPLRIIVDSSLKIPNESRVLGDDL 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 II T +DD + +I C DL+ L+ L +G+ S+L+EGG+ Sbjct: 239 ARGTIIATTSDDQERIGFLETRGAQVIRCASDKGRVDLRDLMQRLGAKGIQSILLEGGSE 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +A + + L+D IL+ + IV+G +E+ R FG DV + Sbjct: 299 LAGAALRQGLIDKFILFYAPIVLGGAAGIGLFGGKSVERMGRAFRLETARVRRFGGDVMI 358 Query: 353 EYIGKNLCL 361 E + C Sbjct: 359 EAYPEEACS 367 >gi|255658129|ref|ZP_05403538.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM 20544] gi|260849436|gb|EEX69443.1| riboflavin biosynthesis protein RibD [Mitsuokella multacida DSM 20544] Length = 363 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 123/341 (36%), Positives = 177/341 (51%), Gaps = 4/341 (1%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G TS NP V +IV+ G ++ G G PHAE+ AL AGE Sbjct: 2 QDEEFMREALELARNAEGRTSPNPMVGAVIVQGGRIVAAGWHRKAGTPHAEIHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A+GAT YVTLEPCSHYGR+ PCA+ ++E GI+R V+ + DP+ V+GRG++ L G+ Sbjct: 62 LAKGATLYVTLEPCSHYGRTGPCAKAVVEAGIKRCVIAMKDPNPLVAGRGIKILEDAGVE 121 Query: 126 V-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E + +L EK + LK A++ D I S IT S+ +VH Sbjct: 122 TVCGVLEEEARRLNEVFLKWVPEKIPFVALKTAMTLDGKIATRTGESQWITNETSRRRVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + D I VGIGTVL DDP LT RL +P+RII+D + L +K++ Sbjct: 182 EYRDRYDGIFVGIGTVLHDDPSLTTRLPDGTGKNPVRIIVDSQARTPLTAKVVCDGQAKT 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ VTE A + ++ DL+ L+ +L R + S+ VEGG V S Sbjct: 242 IVAVTEQAPAERCEALEAAGVEVVRAGKGAHVDLRALMQMLGQREICSVFVEGGGRVNFS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 + + LVD + + + +IG +P+E CV Sbjct: 302 LLRAGLVDKVYAFIAPKLIGGSEALTPVEGEGFAALKDCVE 342 >gi|254361993|ref|ZP_04978124.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mannheimia haemolytica PHL213] gi|153093540|gb|EDN74520.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mannheimia haemolytica PHL213] Length = 359 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 180/354 (50%), Gaps = 12/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ A+ + G TS NP V C+IVK+G +I G G HAE A+ E+ GA Sbjct: 1 MAYAITLAEKARGWTSPNPLVGCVIVKNGNIIAEGYHQKAGSWHAERNAILNCEEDLTGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC H+GR+PPC++ +IE GI++V + DP+ VSG+G L GI +V+ Sbjct: 61 TAYVTLEPCCHHGRTPPCSELLIERGIKKVFIGSRDPNPLVSGKGAAQLRAAGIEVVEDF 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M +E + KR ++ LK ++ D I S ITG ++ V R + Sbjct: 121 MRTECDALNPIFFHYIQTKRPYVLLKYGMTADGKIATYTGNSKWITGEAARANVQKSRHE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TVLADDP L R+ P+RI+ D + LDS++++TA II T Sbjct: 181 YSAIMVGVETVLADDPMLNSRME--NAKQPVRIVCDSQLRTPLDSQLVQTARQYRTIIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 N+D + + I+ R DL LL L G+ SLL+EGG+ + S + Sbjct: 239 LNNDAKKQAEYTACGVEILVTGERDKRVDLADLLQKLGELGIDSLLIEGGSQLNFSVLEQ 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354 LV+ + Y + +IG +P+ + + V+ + G D+ L+Y Sbjct: 299 GLVNRVHCYIAPKLIGGKAAKTPIGGKGIGELAQAVKLRLKSTELLGEDILLDY 352 >gi|196038826|ref|ZP_03106134.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] gi|196030549|gb|EDX69148.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] Length = 370 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H K S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLKTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGTDVNQEKIASYESKNITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|229123633|ref|ZP_04252828.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201] gi|228659768|gb|EEL15413.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 95/8201] Length = 379 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGTDVNQEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|229086682|ref|ZP_04218850.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44] gi|228696629|gb|EEL49446.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-44] Length = 379 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + G TS NP V ++VKDG ++G G G HAEV A+ AG++ Sbjct: 12 DQEYMNIALQLAESTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHAIHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI + Sbjct: 72 AYGSTVYVTLEPCSHFGKTPPCCDLLIEKRVKRVVIATLDCNPLVSGSGARRLQEAGISV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I + S ITG +++ VH Sbjct: 132 TTGVLEEEATTLNRYFFHYMKTKLPFVTIKTAMSLDGKIATSTGESKWITGEDARDDVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT RL P+RIILD H + L S II + Sbjct: 192 YRHTHDAILVGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHIITDGIAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ D + + I++ + ++++ L++L + + SL VEGG +V SF+ Sbjct: 251 IIVGKDVDKGKITTYESQGISVFQMKTKQIEIREFLSLLGEKQILSLFVEGGQSVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 EAKCFNEIVTYISPKLIGGKDAPTMFGGTGFNKLQHAISLQIQEMKQIGDDIKIVATVRN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVPACLQEL 379 >gi|300855387|ref|YP_003780371.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM 13528] gi|300435502|gb|ADK15269.1| riboflavin biosynthesis protein RibD [Clostridium ljungdahlii DSM 13528] Length = 372 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 207/370 (55%), Gaps = 12/370 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D ++M AL+ + G + NP V +IVK+G +IG+G + G HAEV AL Sbjct: 1 MEKENTDEKYMKEALKLALLGKGFVNPNPLVGAVIVKNGKIIGKGYHRFFGGAHAEVYAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ A+GA YVTLEPCSHYG++PPCA+ I+E GI++VV+ DP+ VSGRG++ L Sbjct: 61 REAGDNAQGADLYVTLEPCSHYGKTPPCAKAIVEAGIKKVVIGSVDPNPLVSGRGVKILR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + I +V +ME E +++ K + LK V+ D I S ITG S Sbjct: 121 DENIEVVTGVMEREAVKINEIFMSYIKSKLPFVILKSGVTLDGKIATVSGESKWITGEKS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VH +R + AI+VG+GTV+ DDP LT RL + SP +I+D ++ ++S+I KT Sbjct: 181 RLKVHKMRNRVMAIMVGVGTVILDDPLLTTRLEE-KCKSPKAVIVDSKLRVPVESQIFKT 239 Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293 + +II TE D V A + + +NI+ C DLK L L G+ S+LVE Sbjct: 240 SREREIIIACTEKFDKVKAESLKAMGVNIVVCTENKEGRVDLKYLTKKLGEMGIDSVLVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GG+ + S + S +V+ +I + + ++G + +E + ++ D+C E Sbjct: 300 GGSELNFSALKSGIVNKVIYFIAPKILGGKNAKTSVEGYGIGNLSDSIKLK----DICAE 355 Query: 354 YIGKNLCLQE 363 +G+++ +Q Sbjct: 356 NVGEDIMIQA 365 >gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola sp. JR] gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR] Length = 385 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 145/366 (39%), Positives = 203/366 (55%), Gaps = 11/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D ++M AL + G TS NP V +IVKDG VIG+G G PHAEV AL E Sbjct: 1 MIKTDVKYMRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALRE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE +RGAT YVTLEPCSHYGR+PPC++ +I G+ RVVV ++DP+ VSG+G+Q + + Sbjct: 61 AGELSRGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME E + ++ +R + +K A++ D I A S ITG ++ Sbjct: 121 GIQVEVGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VHL R+ DAILVGIGTVL D+P LTCRL Q +P+RIILD +L +D ++KT Sbjct: 181 LVHLWRSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIE 240 Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 APVI+V+ P K ++ R DL LL L R +TSL VEGGA Sbjct: 241 QAPVIVVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351 V SF+ +RL D + + + ++G P P+ + ++ N + G D+ Sbjct: 301 TVNASFLKNRLADKTVWFVAPKIVGGPQAPGPVGDMGIQFMDECLNIKNMSVQDIGPDLL 360 Query: 352 LEYIGK 357 + Sbjct: 361 ITGYPD 366 >gi|83589766|ref|YP_429775.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Moorella thermoacetica ATCC 39073] gi|83572680|gb|ABC19232.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Moorella thermoacetica ATCC 39073] Length = 376 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 141/374 (37%), Positives = 204/374 (54%), Gaps = 15/374 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + DA FM+ AL +R +G TS NP+V +IV+DG V+G G G PHAE+ AL Sbjct: 1 MQPQDAIFMARALELARQGLGRTSPNPTVGAVIVRDGQVVGEGYHQKAGTPHAEIHALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARGAT YVTLEPC HYGR+PPC + II GI+RVV + DP+ RV+G G + LSQ Sbjct: 61 AGEKARGATLYVTLEPCCHYGRTPPCTEAIIAAGIKRVVAAMADPNPRVAGGGFRALSQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E + A++ R +TLK+A++ D I + ITG ++ Sbjct: 121 GIEVETGLLADEARRLNEAFIKYITTGRPWVTLKMALTLDGKIATRTGAARWITGPAARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 + H LR DAILVGIGTVLADDPELT RL + +R+ILD H +L L ++++ Sbjct: 181 RAHELRDIHDAILVGIGTVLADDPELTTRLPDGRGRDAIRVILDSHLRLPLSARVVNLQS 240 Query: 242 LAPVIIVTENDDPVLALA-FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 AP ++VT P A + + ++ D + LL L R VTS+LVEGGA Sbjct: 241 EAPTLVVTTPSAPAAARENLAARGVEVLVLPEEDGRVAWQPLLAELARRQVTSILVEGGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351 V + + + +VD ++ + + + G P+P+ + + + G D+ Sbjct: 301 EVNATALAAGIVDKVVAFIAPKIFGGREAPAPVGGLGVADPATAWKLEKLAVERCGEDIM 360 Query: 352 LEY----IGKNLCL 361 L G+ CL Sbjct: 361 LSGYLLKRGEEPCL 374 >gi|317497909|ref|ZP_07956219.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 5_1_63FAA] gi|316894890|gb|EFV17062.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 5_1_63FAA] Length = 366 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 122/356 (34%), Positives = 184/356 (51%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+ Sbjct: 3 EEYMRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDP 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GA YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI + Sbjct: 63 KGAEIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETE 122 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + + + LK A++ D I A S ITG ++ VH L Sbjct: 123 TGILEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R Q AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA P I Sbjct: 183 RHQYAAIMAGIGTVLADDPMLNARIEH--GNDPIRVICDSNLRISEGSNIVKTAREIPTI 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T + D +K I+ +D +K++L L + S+LVEGG + S Sbjct: 241 IATISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESL 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I + V + Y + + G +P+E +E+ F ++ G+D+ LE Sbjct: 301 IKNDCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 356 >gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str. 1873] gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str. 1873] Length = 372 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 194/372 (52%), Gaps = 14/372 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ S+ +G T NP V +IVKD +IG G G HAE+ AL+ A E Sbjct: 1 MDLSYMKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYG++PPC II+ GI++V++ + DP+ V+GRG + L GI Sbjct: 61 DVSGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E K ++ K LK A++ D I S I+ +S+ VH Sbjct: 121 VVEGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + I+VGIGT++ D+P LT R+ + RII+D ++ +++K++ A Sbjct: 181 EIRHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAK 240 Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 IIVT + R K +I DLK L+ L R + S+L+EGGA + Sbjct: 241 TIIVTTELANREKIEVIRDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAELN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353 +S +N +VD +I + S +IG +P+E N ++ F D+ +E Sbjct: 301 YSVLNKGIVDKVISFISPKIIGGKEAKTPVEGLGKSTISEGINLENIKVSRFQEDIVIEG 360 Query: 354 YIG--KNLCLQE 363 YI + LC QE Sbjct: 361 YIKGEEKLCSQE 372 >gi|229093172|ref|ZP_04224290.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42] gi|228690146|gb|EEL43940.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-42] Length = 379 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|223041905|ref|ZP_03612090.1| riboflavin biosynthesis protein [Actinobacillus minor 202] gi|223017259|gb|EEF15686.1| riboflavin biosynthesis protein [Actinobacillus minor 202] Length = 364 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 189/363 (52%), Gaps = 14/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ FD +M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+ Sbjct: 1 MTDFD--YMARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILN 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + RGATAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L Sbjct: 59 SSADLRGATAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQDA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V M E + KR ++ LK A++ D I + S ITG +++ Sbjct: 119 GIEVVTDFMREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSTGESKWITGELARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ P+RI+ D + LD ++++TA Sbjct: 179 KVQETRHQYSAIMVGVETVLADNPMLNSRMP--NAKQPVRIVCDSSLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 II T +DD F+ ++++ C + DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTIIATVSDDLQKIAQFQPLGVDVLVCKAKDKRVDLQDLLQKLGEMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + S + + +V+ + Y + ++G +P+ + + G D+ L Sbjct: 297 LNFSALQAGVVNRVHCYIAPKLVGGETAKTPIGGEGIGVLSQAVKLQLQSTELIGEDILL 356 Query: 353 EYI 355 +Y+ Sbjct: 357 DYV 359 >gi|229104716|ref|ZP_04235378.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28] gi|228678780|gb|EEL32995.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-28] Length = 379 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIKV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S II L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHIITNTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|322514846|ref|ZP_08067864.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC 25976] gi|322119150|gb|EFX91295.1| riboflavin biosynthesis protein RibD [Actinobacillus ureae ATCC 25976] Length = 361 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 193/362 (53%), Gaps = 14/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M A+ ++ +G T+ NP V C+IVK+G ++ G G HAE A+ Sbjct: 1 MTDLD--YMRRAIVLAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAILH 58 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ ATAYVTLEPC H+GR+PPC+ +IE GI++V + DP+ V+GRG L Q Sbjct: 59 CKEDLSEATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGASQLRQA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V+ +++ E + KR ++ +K A++ D I + S ITG ++ Sbjct: 119 GVEVVEGLLKDECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATSTGESKWITGESARA 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R Q AI+VG+ TVLAD+P L R+ + P+RI+ D + LD ++++TA Sbjct: 179 RVQQTRHQYSAIMVGVDTVLADNPMLNSRMPNV--KQPVRIVCDSQLRTPLDCQLVQTAK 236 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 +I T +DD FR + ++ C R DL+ LL L + SLL+EGG++ Sbjct: 237 EYRTVIATVSDDLQKIEQFRPPGVEVLVCKARNKRVDLQDLLQKLGDMQIDSLLLEGGSS 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 + S + S +V+ + Y + ++G +P+ +++ V+ + G D+ L Sbjct: 297 LNFSALESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDILL 356 Query: 353 EY 354 +Y Sbjct: 357 DY 358 >gi|229157695|ref|ZP_04285770.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342] gi|228625652|gb|EEK82404.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 4342] Length = 379 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +++ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATLYVTLEPCSHFGKTPPCCDLLLKKGVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTVVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEDARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNPEKIASYESENITIFQIKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 311 QTKHFNEIVTYISPKLIGGSNAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVANARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|327440271|dbj|BAK16636.1| pyrimidine deaminase [Solibacillus silvestris StLB046] Length = 371 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 191/362 (52%), Gaps = 11/362 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G T+ NP V +IVKDG+++G G+ G PHAEV A+ AGE Sbjct: 4 DQDYMQLALELAASARGNTNPNPLVGAVIVKDGVIVGTGLHRKAGEPHAEVHAVNMAGEH 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + AT YVTLEPCSHYG++PPCA+ + E G +RVVV +DP+ V+GRG++ L GI + Sbjct: 64 TKDATIYVTLEPCSHYGKTPPCAKLLKESGFKRVVVATEDPNPEVAGRGIRLLRDAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + ++ + +R + K A++ D I S ITG ++ VH Sbjct: 124 EVGVLQEEAQKLNERFIHNMLTERPFVVAKFAMTLDGKIATYNGHSQWITGEEARADVHE 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + D ILVG+ TVL D+P+LT RLN Q +P+R++LD K +D+ I T Sbjct: 184 LRHEVDGILVGVQTVLNDNPKLTTRLNDDRQGRNPIRVVLDSTLKTPVDAHIADTTDART 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I+ + + D A + + II D ++ +L L +G+T LLVEGG V Sbjct: 244 IIVTSLDSDEEKAQQLERNGVEIIRVDKEKTGLHIEDMLKALYKKGITHLLVEGGGNVNA 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF+ +D I+Y + V+G +P +E L + G D+ + Sbjct: 304 SFLRGGFIDQYIVYIAPKVLGGKNSITPFTGTDVETIDLANQLEFGEVTHVGEDLRIIAY 363 Query: 356 GK 357 K Sbjct: 364 PK 365 >gi|153814754|ref|ZP_01967422.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756] gi|145847785|gb|EDK24703.1| hypothetical protein RUMTOR_00969 [Ruminococcus torques ATCC 27756] Length = 395 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 23 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 82 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 83 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 142 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 143 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 202 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+ GIGTVLADDP L R+ G SP+RI+ D ++ S+I+K+A Sbjct: 203 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 260 Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + + IYC DLKKL+ L RG+ S+L+EGG + Sbjct: 261 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 320 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 S + +V + + + + G +P+E +E V Y G D+ ++ Sbjct: 321 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 380 Query: 355 -----IGKNLCLQE 363 + CLQE Sbjct: 381 QVCDKKQEESCLQE 394 >gi|126650091|ref|ZP_01722324.1| riboflavin specific deaminase [Bacillus sp. B14905] gi|126593263|gb|EAZ87225.1| riboflavin specific deaminase [Bacillus sp. B14905] Length = 375 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 190/366 (51%), Gaps = 10/366 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A Sbjct: 5 TMTNKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE A+ AT YVTLEPCSH+G++PPCA + E G+ RVVV + DP+ V+GRG+Q L Sbjct: 65 MAGEHAKNATLYVTLEPCSHFGKTPPCANLVKESGVSRVVVAMQDPNPTVAGRGIQLLRD 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E + + ++ + KR + K A++ D I S +TG ++ Sbjct: 125 AGIAVEVGVLEQQARRLNERFIHNMLTKRPFVISKFAMTVDGKIATHTGHSKWVTGDAAR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ + T Sbjct: 185 EDVHHIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRSPLDANVFNTE 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGA 296 +++ + +F K + ++ + +L ++L L G+T +L+EGG+ Sbjct: 245 EAPTILVCSNEVSQEKVDSFTDKGLTVLPIEKNELGLNIDEMLARLYEHGITDILLEGGS 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 V SF+ +D ++Y + V+G +P + D G D+ Sbjct: 305 KVNASFLQQGAIDKYVIYVAPKVLGGNLSLTPFAGDNPSFMNEAWDIEFASFDKIGEDLR 364 Query: 352 LEYIGK 357 + K Sbjct: 365 IIAYPK 370 >gi|218283800|ref|ZP_03489723.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989] gi|218215606|gb|EEC89144.1| hypothetical protein EUBIFOR_02317 [Eubacterium biforme DSM 3989] Length = 389 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 189/374 (50%), Gaps = 19/374 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 17 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTES 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE I++VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 77 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIKKVVIGSRDPNPKVAGKGVQMLRKAGVTV 136 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S IT S+ +V Sbjct: 137 VEDFMGEECDRLNPVFFHYITMKTPYVVMKYAMTLDGKIATKTGASKWITSLASRKEVQH 196 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+VGIGTVL DDP L R+ G SP+RI+ D ++ LDS+I+K+A Sbjct: 197 MRHQYMGIMVGIGTVLEDDPMLNVRVEGW--KSPVRIVCDSKLRIQLDSQIVKSAKKYRT 254 Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + + + IYC DLK+L+ L RG+ S+L+EGG + Sbjct: 255 IVAYADQKNTGEKIKILHTRGVETIYCPDEKNQIDLKRLMIDLGNRGIDSILLEGGGTLN 314 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL-- 352 S + + +V + + + + G +P+E ++ V Y G D+ + Sbjct: 315 DSALRAGIVKEVQAFVAPKLFGGVAGKTPVEGVGVKFPSEAVELKYTDICQIGQDIRIRC 374 Query: 353 ---EYIGKNLCLQE 363 E + CLQE Sbjct: 375 QVCEKKQEESCLQE 388 >gi|238925477|ref|YP_002938994.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656] gi|238877153|gb|ACR76860.1| riboflavin biosynthesis protein [Eubacterium rectale ATCC 33656] Length = 394 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 9 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 69 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 128 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++++ E + +R ++ +K A++ D I S ITG ++ V Sbjct: 129 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P Sbjct: 189 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 246 Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276 I+ TE D + I I+Y + DL Sbjct: 247 IVAVSERYHETAQSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 306 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E + Sbjct: 307 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 366 Query: 337 NFMCV-----RRDYFGSDVCLE 353 V + G D +E Sbjct: 367 PAHAVMLGNSKVTKLGDDFLIE 388 >gi|291524228|emb|CBK89815.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium rectale DSM 17629] Length = 386 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 63 PQGADMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++++ E + +R ++ +K A++ D I S ITG ++ V Sbjct: 123 VTQVLKDECDRLNDVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240 Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276 I+ TE D + I I+Y + DL Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E + Sbjct: 301 DLMQKLGERNIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360 Query: 337 NFMCV-----RRDYFGSDVCLE 353 V + G D +E Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382 >gi|222085509|ref|YP_002544039.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase protein [Agrobacterium radiobacter K84] gi|221722957|gb|ACM26113.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase protein [Agrobacterium radiobacter K84] Length = 371 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 191/367 (52%), Positives = 247/367 (67%), Gaps = 11/367 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D RFM+AA+R SRWH+GLTSTNPSV C+IVKDG VIGRGVTA GG PHAE QAL Sbjct: 3 MTRRPDDERFMAAAIRLSRWHLGLTSTNPSVGCVIVKDGAVIGRGVTAVGGRPHAETQAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGATAYVTLEPCSHYG++PPC++ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 63 ADAGEAARGATAYVTLEPCSHYGKTPPCSEALIAYGVARVVISVTDPDQRVSGRGIAMLR 122 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E EG+ L YL RQ R ++TLK+AVS D MIG G G V ITG ++ Sbjct: 123 DAGIEVDIGILEEEGRHSLAGYLMRQTRNRPYVTLKLAVSTDGMIGKTGTGQVRITGDVA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + QV ++RA+SDAILVGIGT +ADDPELTCRL GL++ +P+RI++D +L L SK++KT Sbjct: 183 RAQVQVVRAESDAILVGIGTAIADDPELTCRLPGLEDRTPLRIVIDDQLQLPLGSKLVKT 242 Query: 240 ALLAPVIIVTENDDP----------VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 A PVI V + P A + ++ + + +LL L RG++S Sbjct: 243 ARQYPVITVAGHPPPFDENTDKALMARRAALDDAGVEVLQSNSNEPGELLEALGTRGISS 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 LLVEGGA VA F+++ LVD I+L++ IGEGGI SP+ + + +F +R FG D Sbjct: 303 LLVEGGARVAQRFLDADLVDRILLFQGPDAIGEGGIESPVTKTNIPPSFRHIRASQFGDD 362 Query: 350 VCLEYIG 356 C E+ Sbjct: 363 RCDEFER 369 >gi|226324277|ref|ZP_03799795.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758] gi|225206725|gb|EEG89079.1| hypothetical protein COPCOM_02056 [Coprococcus comes ATCC 27758] Length = 370 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 18/364 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DEFYMRRAIELAKKGRGWTNPNPMVGAVIVKDGSIIGEGYHEKCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ +VSG+G + L + G+ + Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPKVSGKGAKILREAGVRV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E + ++ +K A++ D I S I+G +++ VH Sbjct: 123 EEDFLREECDALNPVFFHYITTGLPYVVMKYAMTADGKIATKTGASKWISGEEARSLVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R AI+ GIGTVLADDP L RL G + SP+RII D ++ LDS+I +TA Sbjct: 183 MRHDYMAIMAGIGTVLADDPMLNVRLEG--KKSPVRIICDSMLRIPLDSQICQTAGRYRT 240 Query: 246 IIVTENDD------PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 I+ + + K + ++ +L+ L+ L G+ S+L+EGG Sbjct: 241 IVAYAGEKGNAICLEEKKHSLEKLGVVLLSVPSEKGEINLQLLMRKLGELGIDSVLIEGG 300 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 + + S +V+ + + + + G G +P+E +EK +R G D+ Sbjct: 301 GTLNEDALQSGIVNEVKAFIAPKIFGGRGGKTPVEGFGVEKVDDAIKLQLMRISQVGEDI 360 Query: 351 CLEY 354 EY Sbjct: 361 LAEY 364 >gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli IAI39] gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli IAI39] Length = 367 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|52141386|ref|YP_085445.1| riboflavin biosynthesis protein [Bacillus cereus E33L] gi|51974855|gb|AAU16405.1| riboflavin biosynthesis protein [Bacillus cereus E33L] Length = 370 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAIVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|291527733|emb|CBK93319.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Eubacterium rectale M104/1] Length = 388 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 37/382 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M A+ ++ +G TS NP V +IVKDG +IG G G HAE AL+ E Sbjct: 3 DEQYMRRAIELAKRGMGYTSPNPMVGAVIVKDGRIIGEGWHERYGELHAERNALKHCKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H+G+ PPC + +IE GI+RV V DDP+ V+G G++ L + GI + Sbjct: 63 PQGAEMYVTLEPCCHHGKQPPCVEAVIEAGIKRVYVGSDDPNPLVAGGGIKILKEHGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++++ E + +R ++ +K A++ D I S ITG ++ V Sbjct: 123 VTQVLKDECDRLNEVFFYFIQTRRPYVAMKYAMTMDGKIATYSGLSKWITGEKAREHVQN 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + AI+ GIGTVLADDP LTCR+ G +P+RII D H KL L+S+I+ TA P Sbjct: 183 LRHRYKAIMAGIGTVLADDPLLTCRIEG--GVNPIRIICDTHLKLPLESQIVNTAKEVPT 240 Query: 246 IIV----------------TENDDPV---------LALAFRKKNINIIYCDCR----DLK 276 I+ TE D + I I+Y + DL Sbjct: 241 IVAVSERYRETAHSEALPDTEKDSIEENNNYQKNRKITRLEENGIEILYVAEKNGHIDLN 300 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 L+ L R + S+L+EGG + S + S +V+ + Y + + G +P+E + Sbjct: 301 DLMQKLGERSIDSILLEGGGILNWSALKSGIVNKVYAYIAPKLFGGADAKTPIEGMGTDS 360 Query: 337 NFMCV-----RRDYFGSDVCLE 353 V + G D +E Sbjct: 361 PAHAVMLGNSKVTKLGDDFLIE 382 >gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O127:H6 str. E2348/69] gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75] gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O127:H6 str. E2348/69] gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75] Length = 367 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|49480339|ref|YP_038170.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331895|gb|AAT62541.1| riboflavin biosynthesis protein [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 370 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ GI RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCDLLIKKGITRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|228929160|ref|ZP_04092187.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947830|ref|ZP_04110117.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228811817|gb|EEM58151.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830450|gb|EEM76060.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 379 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 311 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|229098580|ref|ZP_04229521.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29] gi|228684902|gb|EEL38839.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock3-29] Length = 379 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I AL Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDALAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|331088370|ref|ZP_08337289.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 3_1_46FAA] gi|330408614|gb|EGG88080.1| riboflavin biosynthesis protein RibD [Lachnospiraceae bacterium 3_1_46FAA] Length = 375 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGKIIGEGYHKKYGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTEAIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGESARKEVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+ GIGTVLADDP L R+ G SP+RI+ D ++ S+I+K+A Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPGSQIVKSAEKYRT 240 Query: 246 II--VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ + + + IYC DLKKL+ L RG+ S+L+EGG + Sbjct: 241 IVAYAEQKNAKEKIKILHTMGVETIYCPDEKNQIDLKKLMADLGNRGIDSILLEGGGTLN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 S + +V + + + + G +P+E +E V Y G D+ ++ Sbjct: 301 DSALRVGIVKEVQAFVAPKLFGGVAGKTPVEGIGVELPSEAVELKYTDICQIGEDIRIKC 360 Query: 355 -----IGKNLCLQE 363 + CLQE Sbjct: 361 QVCDKKQEESCLQE 374 >gi|169827319|ref|YP_001697477.1| riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus C3-41] gi|168991807|gb|ACA39347.1| Riboflavin biosynthesis protein ribD [Lysinibacillus sphaericus C3-41] Length = 375 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 190/366 (51%), Gaps = 10/366 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +++ D ++M AL + G T+ NP V +IVK+ I++G G+ G PHAEV A Sbjct: 5 TMTTKDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNDIIVGTGLHRKAGEPHAEVHAFR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE A+ AT YVTLEPCSH+G++PPCA + + G+ RVVV + DP+ V+GRG+Q L Sbjct: 65 MAGEHAQNATLYVTLEPCSHFGKTPPCANLVKDSGVSRVVVAMQDPNPTVAGRGIQLLRD 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E + + ++ + KR I K A++ D I S +TG ++ Sbjct: 125 AGITVEVGVLEQQARRLNERFIHNMLTKRPFIISKFAMTVDGKIATHTGHSKWVTGKAAR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH +R + D ILVG+GTV+AD+P LT RL+ +P RII+D + LD+ ++ T Sbjct: 185 EDVHRIRHEVDGILVGVGTVIADNPSLTTRLSEGYGKNPTRIIMDSLLRTPLDANVLNTE 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGA 296 +++ + + K + ++ + ++ ++L L G+T +L+EGG+ Sbjct: 245 EAPTILVCSNDVSQEKIDLLINKGLTVLPIEKDERGLNIDEMLARLYEHGITDILLEGGS 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 V SF+ +D ++Y + V+G +P D G D+C Sbjct: 305 KVNASFLQQGAIDKYVIYIAPKVLGGNLSLTPFAGSNPSLMNEAWQVEFASFDKIGEDLC 364 Query: 352 LEYIGK 357 + K Sbjct: 365 IIAYPK 370 >gi|302392186|ref|YP_003828006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Acetohalobium arabaticum DSM 5501] gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Acetohalobium arabaticum DSM 5501] Length = 371 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 193/368 (52%), Gaps = 11/368 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M AL + G TS NP V +IVKDG ++G+G G PHAEV AL Sbjct: 1 MADYNRDIDYMRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 ++A ++ AT YVTLEPCSHYG++PPC + +I G+ RVV + DP+ +V+GRGLQ L+ Sbjct: 61 QDAADKTEDATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLA 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E E K A++ +R + LK A++ D I S I+G S Sbjct: 121 DAGIEVESGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEES 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LR + D ILVGIGTVL+D+P LT RL P+RI+LD ++ LDS ++ Sbjct: 181 RRYVHRLRDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQ 240 Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 A ++ E D A + + +I+ + DL LL L + SLLVEG Sbjct: 241 ESEAKTVVAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEG 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSD 349 G+ + SF+ + LVD I+ + + +IG + ++K + G+D Sbjct: 301 GSRINTSFLFTELVDKILYFIAPKLIGGSEAVQAVGGQGVDKVADGIELGDYELSTIGND 360 Query: 350 VCLEYIGK 357 + + Sbjct: 361 ILIVGYPD 368 >gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16] gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16] Length = 366 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 195/354 (55%), Gaps = 9/354 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI + Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +T+K A S D I A S IT ++ VH Sbjct: 124 EVGILKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TV+AD+P+LT R+ G Q +P+R+ILD + LD+ ++ Sbjct: 184 LRAQHDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETW 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 II A + + + I+ D++++L +L + +TSL VEGG+ + SF+ Sbjct: 243 IITGSGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL 352 S +V+ ++ Y + +IG P+P+ + + D G D+ + Sbjct: 303 RSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 356 >gi|228935432|ref|ZP_04098250.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824184|gb|EEM69998.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 379 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEETCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD + + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTNLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+V + + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IMVGRDVNKEKIASYESENITIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S +IG P+ + G D+ + +N Sbjct: 311 QTKYFNEIITYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli WV_060327] Length = 367 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|229075817|ref|ZP_04208794.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18] gi|228707369|gb|EEL59565.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-18] Length = 379 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|30264187|ref|NP_846564.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames] gi|47529628|ref|YP_020977.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames Ancestor'] gi|49187016|ref|YP_030268.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Sterne] gi|165871134|ref|ZP_02215784.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0488] gi|167633706|ref|ZP_02392030.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0442] gi|167639402|ref|ZP_02397673.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0193] gi|170687109|ref|ZP_02878327.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0465] gi|170705665|ref|ZP_02896128.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0389] gi|177652658|ref|ZP_02935074.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0174] gi|190566211|ref|ZP_03019130.1| riboflavin biosynthesis protein RibD [Bacillus anthracis Tsiankovskii-I] gi|196035025|ref|ZP_03102432.1| riboflavin biosynthesis protein RibD [Bacillus cereus W] gi|218905249|ref|YP_002453083.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820] gi|227816888|ref|YP_002816897.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC 684] gi|229603428|ref|YP_002868410.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0248] gi|254683878|ref|ZP_05147738.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CNEVA-9066] gi|254721713|ref|ZP_05183502.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A1055] gi|254736225|ref|ZP_05193931.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Western North America USA6153] gi|254744115|ref|ZP_05201798.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Kruger B] gi|254754105|ref|ZP_05206140.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Vollum] gi|254758204|ref|ZP_05210231.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Australia 94] gi|30258832|gb|AAP28050.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Ames] gi|47504776|gb|AAT33452.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. 'Ames Ancestor'] gi|49180943|gb|AAT56319.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. Sterne] gi|164713053|gb|EDR18580.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0488] gi|167512461|gb|EDR87836.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0193] gi|167531112|gb|EDR93799.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0442] gi|170129205|gb|EDS98069.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0389] gi|170668726|gb|EDT19471.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0465] gi|172081993|gb|EDT67061.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0174] gi|190563130|gb|EDV17096.1| riboflavin biosynthesis protein RibD [Bacillus anthracis Tsiankovskii-I] gi|195992564|gb|EDX56525.1| riboflavin biosynthesis protein RibD [Bacillus cereus W] gi|218537200|gb|ACK89598.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH820] gi|227005412|gb|ACP15155.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. CDC 684] gi|229267836|gb|ACQ49473.1| riboflavin biosynthesis protein RibD [Bacillus anthracis str. A0248] Length = 370 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSTLQDALSLEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|229140846|ref|ZP_04269391.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26] gi|228642636|gb|EEK98922.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST26] Length = 379 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +T+K A+S D S IT ++ VH Sbjct: 132 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 311 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVMECLQEL 379 >gi|164687268|ref|ZP_02211296.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM 16795] gi|164603692|gb|EDQ97157.1| hypothetical protein CLOBAR_00909 [Clostridium bartlettii DSM 16795] Length = 370 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 11/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ +G + NP V C+IVKDG VIG G G PHAEV A+ A E+ Sbjct: 10 DNYYMKKALELAKLGIGAVNPNPLVGCIIVKDGKVIGEGYHMKFGEPHAEVNAINSAKED 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPCSH+G++PPCA ++ ++RVV+C +DP+ V+G G++ L GI + Sbjct: 70 IEGATVYVTLEPCSHFGKTPPCADNLVRHKVKRVVICNNDPNPLVAGNGIKKLQNAGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E EG + + + K A+S D I S I+ + H Sbjct: 130 TTGILEEEGLKLNEVFFHYIKNNKPLVISKTAISMDGKIATKHMESQWISNESCREMTHE 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VGI TVL D+P LT R+ + +P+RI++D + K+ ++S ++ + Sbjct: 190 YRNKYMAIMVGINTVLKDNPSLTSRIKNKKTRNPIRIVIDTNLKIPMNSNLVNDN-KSKT 248 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T N+D ++K++++ C DL ++ L + S+LVEGGA + S Sbjct: 249 IIFTCNNDLKKINLLKEKDVDVHICPKKEEGVDLNFVIEKLGELKIDSVLVEGGATLNDS 308 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + LVD + ++ + +IG PS + +EK SD+ +E Sbjct: 309 LFRNNLVDKVKIFMAPKIIGGKDAPSFVSGCGIEKLSEATKLEIKNTTMIDSDILIE 365 >gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UTI89] gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli APEC O1] gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli S88] gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia sp. 3_2_53FAA] gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UTI89] gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC O1] gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli S88] gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia sp. 3_2_53FAA] gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034] gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3] gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252] gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263] Length = 367 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli 1180] Length = 361 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|217961603|ref|YP_002340173.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187] gi|222097559|ref|YP_002531616.1| riboflavin biosynthesis protein ribd [Bacillus cereus Q1] gi|217063616|gb|ACJ77866.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH187] gi|221241617|gb|ACM14327.1| riboflavin biosynthesis protein RibD [Bacillus cereus Q1] Length = 370 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVMECLQEL 370 >gi|206976286|ref|ZP_03237194.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97] gi|206745482|gb|EDZ56881.1| riboflavin biosynthesis protein RibD [Bacillus cereus H3081.97] Length = 370 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTFGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 302 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVMECLQEL 370 >gi|229198234|ref|ZP_04324942.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293] gi|228585253|gb|EEK43363.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1293] Length = 373 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 66 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S IT ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ +P ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 245 IIVGKDVNPEKIASYESENIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + ++ Sbjct: 305 QTKYFNEIVTYISPKLIGGKNAPTLFGGNGFSTLQDALSLEIQEMKQVGDDIKIVAHARS 364 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 365 EVMECLQEL 373 >gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 356 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 111/358 (31%), Positives = 195/358 (54%), Gaps = 13/358 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ ++ +G T+ NP V +IVK+G +IG G Y G PHAE+ AL+ E+ GA Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKEDVIGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC HYG++PPC I++ GI+ V + ++DP+ VSG+G++ L + G+ + + Sbjct: 61 QLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVYTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + ++ K+ ++ LK A++ D I S IT S+ VH++R Sbjct: 121 LKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIMRGC 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ D+P LT R++G +P+R+++D ++ L++ ++ ++ T Sbjct: 181 VMAIMVGVNTVIKDNPYLTARIDGF--KNPLRVVVDSRGRIPLEANVVIDKSAKTIVATT 238 Query: 250 ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + A R +++ D DLKKL+ +L RG+ S+++EGG + +S + Sbjct: 239 DMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSALKE 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIGK 357 +VD ++ Y + +IG +P+E ++ + F D+ +E YI K Sbjct: 299 GIVDKVMFYIAPKIIGGSNSLTPVEGKGIDLIKDAIMIEKLDVKRFDDDILIEGYIKK 356 >gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli CFT073] gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11] gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli ED1a] gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 83972] gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1] gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1] gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605] gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073] gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11] gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli ED1a] gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82] gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 83972] gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15] gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1] gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1] gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O83:H1 str. NRG 857C] gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1] gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2] gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1] gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli AA86] gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|114566748|ref|YP_753902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337683|gb|ABI68531.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 133/361 (36%), Positives = 192/361 (53%), Gaps = 12/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D RFM AL + G TS NP V ++VKDG ++G G G PHAE+ AL A Sbjct: 3 NNDDQRFMQRALELAARARGRTSPNPLVGAVLVKDGQILGEGYHQRAGTPHAEINALNTA 62 Query: 64 G-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G E A+GA+ YV LEPCSHYGR+ PCA ++E G+ VV+ DP+ +VSGRG+Q L + Sbjct: 63 GRERAKGASIYVNLEPCSHYGRTAPCALALVEAGVAEVVIATLDPNPQVSGRGVQILQEA 122 Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ +E + + R ++LK+A++ D I + S ITG S+ Sbjct: 123 GIKTRVGVLTAEARELNEFFFKYIQGGRPFVSLKVAMTLDGKIASSNGDSRWITGTASRE 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR D I+VGIGTVL DDP L RL + P+RII+D + LDS I +T Sbjct: 183 YVHQLRNIYDGIMVGIGTVLKDDPRLNTRLELEGKRDPVRIIIDGRLDMPLDSNIARTGH 242 Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 ++ T EN D A + R+ + II D ++++ L IL + SLL+EGGA Sbjct: 243 EQRTLVFTAENADQEKANSLRECGLEIIKLGGNPDRLNIEEALDILGKMEIMSLLLEGGA 302 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351 + I +LVD + + + +IG PSPL ++ V +F D+ Sbjct: 303 EINSYMIEKQLVDKLYWFIAPKIIGGRSSPSPLGGEGIKIMNQAIKLKSVTTRHFDDDIL 362 Query: 352 L 352 + Sbjct: 363 I 363 >gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LR+QS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|228998898|ref|ZP_04158483.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17] gi|228760914|gb|EEM09875.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock3-17] Length = 370 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI + Sbjct: 63 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I S ITG +++ VH Sbjct: 123 TTSVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT RL P+RIILD H + L S +I + Sbjct: 183 YRHTHDAILIGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHVITDEMAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + + ++++ +++ LL +L + + SL VEGG +V SF+ Sbjct: 242 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ K + G D+ + +N Sbjct: 302 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVPACLQEL 370 >gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella dysenteriae Sd197] gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617] gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae Sd197] gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E H P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|65321502|ref|ZP_00394461.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Bacillus anthracis str. A2012] Length = 370 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +P+R+ILD H + S +I +L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GQNPIRVILDTHLRTPPSSHVITDSLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV + + ++ KNI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IIVGTDVNQEKIASYESKNIAIFQMKTKQIEIQDVLHLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ + G D+ + +N Sbjct: 302 QTKYFNEIVTYISPKLIGGSKAPTLFGGNGFSXLQDALSXEIQEMKQIGDDIKIVAHARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206] gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3] gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206] Length = 367 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GAT YVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1] gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1] Length = 367 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|313895132|ref|ZP_07828689.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 137 str. F0430] gi|312976027|gb|EFR41485.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 137 str. F0430] Length = 386 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 194/362 (53%), Gaps = 7/362 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AG Sbjct: 23 ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRAAGEPHAEIHALRMAG 82 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI Sbjct: 83 ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 142 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +L V KR +TLK A++ D S ITG ++ +V Sbjct: 143 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARMRV 202 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R DAILVGIGTVLAD+P LT RL +P+R++LD + D+K++ Sbjct: 203 HEWRDAHDAILVGIGTVLADNPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 262 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I V+E P + ++ + D+ L+ L +TS+ VEGGA+V S Sbjct: 263 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 322 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+++ LVD + + + +++G P+ + E +R D +E +G ++ + Sbjct: 323 FLSAGLVDKVRAFIAPMLMGGADAPTAVGGAGFESPQAALRLT----DTTVERVGADILM 378 Query: 362 QE 363 Sbjct: 379 TG 380 >gi|229117606|ref|ZP_04246978.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3] gi|228665926|gb|EEL21396.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-3] Length = 379 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 194/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAKGTSGQTSPNPMVGAVVVKDGNIVGMGAHLCAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++R+V+ D + VSG G + L + GI + Sbjct: 72 AKNATVYVTLEPCSHFGKTPPCCELLIEKGVKRIVIATLDCNPLVSGNGKKKLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLETEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGAEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ +HS +R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNGGKHS-IRVILDTHLRTPPSSHVITDTLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ KNI I + +++ +L +L + + SL +EGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESKNIAIFQMKTKQIEIQDVLDLLGEKQILSLFIEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG G P+ K + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKGAPTLFGGNGFSKLQDSLSLKIQEMKQIGDDIKIVATARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|219871320|ref|YP_002475695.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165] gi|219691524|gb|ACL32747.1| riboflavin biosynthesis protein RibD [Haemophilus parasuis SH0165] Length = 363 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 115/355 (32%), Positives = 187/355 (52%), Gaps = 12/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A+ + G T+ NP V C+IVKDG +I G G HAE A+ E+ G Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKDGKIIAEGYHQRYGEWHAERNAILHCQEDLSG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPC H+G +PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI +++ Sbjct: 66 ATAYVTLEPCCHHGWTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M++E + KR ++ +K A++ D I A + ITG ++ V R Sbjct: 126 VMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQCTRH 185 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 Q AI+VG+ TVLAD+P L R+ P+RI+ D + L+ ++++TA II Sbjct: 186 QYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSRLRTPLECQLVQTAKTYRTIIA 243 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +DD F+ + ++ C + DL LL L +G+ SLL+EGG+++ S +N Sbjct: 244 TVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFSALN 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354 + +V+ + Y + ++G +P+ + + G D+ ++Y Sbjct: 304 AGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDY 358 >gi|167855405|ref|ZP_02478171.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755] gi|167853471|gb|EDS24719.1| formyltetrahydrofolate deformylase [Haemophilus parasuis 29755] Length = 363 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 115/355 (32%), Positives = 189/355 (53%), Gaps = 12/355 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM+ A+ + G T+ NP V C+IVKDG ++ G G HAE +A+ E+ G Sbjct: 6 FMARAIELAELGRGWTNPNPLVGCVIVKDGNIVAEGYHQRYGEWHAERKAILHCQEDLSG 65 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPC H+GR+PPC+ +IE GI+ VV+ DP+ V+G+G+ L Q GI +++ Sbjct: 66 ATAYVTLEPCCHHGRTPPCSDLLIERGIKTVVIGSSDPNPLVAGKGVAQLRQAGIEVIEN 125 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M++E + KR ++ +K A++ D I A + ITG ++ V R Sbjct: 126 VMKAECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATATGEAKWITGEQARANVQCTRH 185 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 Q AI+VG+ TVLAD+P L R+ P+RI+ D + L+ ++++TA II Sbjct: 186 QYSAIMVGVDTVLADNPMLNSRMP--NAKQPVRIVCDSRLRTPLECQLVQTAKTYRTIIA 243 Query: 249 TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 T +DD F+ + ++ C + DL LL L +G+ SLL+EGG+++ S +N Sbjct: 244 TVSDDLQKIAQFQPLGVEVLVCKAKDKRIDLADLLQKLGDQGIDSLLLEGGSSLNFSALN 303 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354 + +V+ + Y + ++G +P+ + + G D+ ++Y Sbjct: 304 AGIVNRVHCYIAPKLVGGVTAKTPIGGEGIGVLANAVQLKNAKIRQIGEDLLIDY 358 >gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella sonnei Ss046] gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Shigella sonnei Ss046] Length = 367 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|320529850|ref|ZP_08030927.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399] gi|320137868|gb|EFW29773.1| riboflavin biosynthesis protein RibD [Selenomonas artemidis F0399] Length = 369 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 131/362 (36%), Positives = 194/362 (53%), Gaps = 7/362 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL + + G TS NP V +IV+DGIV+G G G PHAE+ AL AG Sbjct: 6 ARDEHFMWEALHLAEFARGRTSPNPLVGAVIVRDGIVVGSGWHRVAGEPHAEIHALRMAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+ PCA+ +I GI RVV + DP+ V+G G++ L GI Sbjct: 66 ELARGATLYVTLEPCSHHGRTGPCAEAVIAAGIARVVTALSDPNPVVAGHGIERLRAAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +L V KR +TLK A++ D S ITG ++ +V Sbjct: 126 EVTTGVLSEEARRQNEVFLKWVVTKRPFVTLKTAMTLDGKTASRTGASQWITGAEARTRV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R DAILVGIGTVLADDP LT RL +P+R++LD + D+K++ Sbjct: 186 HEWRDAHDAILVGIGTVLADDPSLTVRLPHRTGKNPVRVVLDSTARTPHDAKLLTDGAAR 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I V+E P + ++ + D+ L+ L +TS+ VEGGA+V S Sbjct: 246 TIIAVSERAAPKRTALLQACGAEVVTFGRERVDIPALMDFLGREELTSVFVEGGASVHWS 305 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+++ LVD + + + +++G P+ + E +R D +E +G ++ + Sbjct: 306 FLSAGLVDKVCAFIAPMLMGGADAPTAVGGAGFESPQTALRLT----DTTVEQVGADILM 361 Query: 362 QE 363 Sbjct: 362 TG 363 >gi|168187451|ref|ZP_02622086.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str. Eklund] gi|169294672|gb|EDS76805.1| riboflavin biosynthesis protein RibD [Clostridium botulinum C str. Eklund] Length = 372 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 131/369 (35%), Positives = 190/369 (51%), Gaps = 14/369 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A+ S+ G T NP V +IVKD +IG+G G HAEV AL+ A E+ Sbjct: 4 KFMKKAIELSKLGAGYTYPNPLVGAVIVKDNKIIGQGYHERFGGLHAEVNALKNATEDVT 63 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI + Sbjct: 64 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVTV 123 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E K ++ K+ LK A++ D I S I+ IS+ VH +R Sbjct: 124 GIFEEEIKKINEIFIKYITTKKPFCILKTAMTLDGKIATVTGDSKWISNEISRQYVHKIR 183 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + I+VGIGTVL DDP LT RL RII+D ++ L+SK++ II Sbjct: 184 HRVAGIMVGIGTVLKDDPSLTTRLKEKAGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 243 Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T D +KK +I + DL+ L+ L + S+L+EGG + +S Sbjct: 244 ATTKLADKEKIDEIKKKGAEVIITPIKNGKVDLRFLMNELGKINIDSILLEGGGTLNYSA 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 +N +VD +I + S +IG +P+ ++ F + F DV +E YI Sbjct: 304 LNEGIVDKVISFISPKIIGGQDAKTPVAGEGIKNISDAVTFHNIEISRFEEDVVIEGYIK 363 Query: 357 KN--LCLQE 363 K +C QE Sbjct: 364 KENKVCSQE 372 >gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185] gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185] Length = 367 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|295704047|ref|YP_003597122.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319] gi|294801706|gb|ADF38772.1| riboflavin biosynthesis protein RibD [Bacillus megaterium DSM 319] Length = 363 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 125/356 (35%), Positives = 199/356 (55%), Gaps = 10/356 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ +R G T NP V +IV D ++G G G PHAE+ AL AGE+A Sbjct: 5 EFYMNIALQNARSTKGQTEPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI ++ Sbjct: 65 KGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVEILKNAGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E + + V K+ ++LK A++ D I A S IT ++ VH L Sbjct: 125 TGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ ILVG+ TV+ D+PELT R+ G SP+RI++D ++ L+SK+ +L I Sbjct: 185 RHETAGILVGVNTVIKDNPELTTRIEG--GRSPIRIVMDSKLRMPLESKLATDSLAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ K+ + + D L+ +L+IL + V+SLL+EGG V +F+ Sbjct: 243 FTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFL 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 +RL+D ++LY + + G P+ LE +EK + V + + IGK+ Sbjct: 303 ENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERL----SVTSIGKDF 354 >gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli SMS-3-5] gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1] gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5] gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1] Length = 367 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG +G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ DD + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQDDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|17227578|ref|NP_484126.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120] gi|17135060|dbj|BAB77606.1| riboflavin biosynthesis protein [Nostoc sp. PCC 7120] Length = 396 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G+ L G Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVGGGGIARLRGAG 154 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ + + + ++ R V K+ LK A++ D I S +T ++ + Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRIVHKKPLGILKYAMTLDGKIATTSGHSAWVTNPSARGE 214 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT G+ H+P+R+++ L LD+ + +T Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQMDLPLDAHLWETVEA 272 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ +P ++K + I+ + +++ L RG S+L E G +A S Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPETVMSYLYDRGFCSVLWECGGTLAASA 332 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 I V I+ + + +IG P+P+ + + VR GSD +E Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392 Query: 358 NL 359 +L Sbjct: 393 SL 394 >gi|302390233|ref|YP_003826054.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermosediminibacter oceani DSM 16646] gi|302200861|gb|ADL08431.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermosediminibacter oceani DSM 16646] Length = 373 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 136/371 (36%), Positives = 203/371 (54%), Gaps = 15/371 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D FM AL ++ G TS NP V ++VKDG ++G G G PHAEV+AL +A Sbjct: 2 ERDVFFMRRALDLAKKGRGTTSPNPMVGAVVVKDGEIVGEGYHRKAGEPHAEVEALAQAA 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGA YV LEPC HYGR+PPCA II G++RVV + DP+ V+G+G++ L + GI Sbjct: 62 ERARGAELYVNLEPCCHYGRTPPCADTIIRAGVKRVVAAMADPNPLVAGKGIKRLKEAGI 121 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E ++ + + + KIA S D I MA S ITG ++ + Sbjct: 122 EVVVGVLEEEAKKLNEVFIKYIITGKPFVVAKIAQSFDGKIAMASGESRWITGEPARVKA 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR+ DAI+VG+GTV+ADDP LTCRL + +P+RI++D ++ D+++++ Sbjct: 182 HELRSWYDAIMVGVGTVMADDPLLTCRLPE-KRKNPVRIVVDSGARMPPDARMLRCEGGR 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ TE D A +++ + +I DL +L+ IL G G+TS+LVEGG+ + Sbjct: 241 VILATTERADSERVSALKERGVEVIKVPPAEGRVDLSRLMEILGGMGITSVLVEGGSTLT 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYI 355 S I LVD ++++ + +VIG GI S ++ F D G D+ LE Sbjct: 301 SSLIKGNLVDKLLVFVAPVVIGGEGIDSVGKLHVDRLSQAPRFKFHSIDAIGGDLLLEAY 360 Query: 356 G-----KNLCL 361 ++ CL Sbjct: 361 PDLKREEDSCL 371 >gi|186680558|ref|YP_001863754.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102] gi|186463010|gb|ACC78811.1| riboflavin biosynthesis protein RibD [Nostoc punctiforme PCC 73102] Length = 407 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 188/374 (50%), Gaps = 17/374 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD+R M L +R +G TS NP V +IVKDG ++G G G PHAEV AL+ A Sbjct: 36 TDFDSRMMLRCLELARRALGRTSPNPLVGAVIVKDGEIVGEGFHPRAGEPHAEVFALQAA 95 Query: 64 G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 G ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VVV + DP+ V+G G Sbjct: 96 GVGAASPQENRARGATIYVNLEPCNHYGRTPPCSEGLIQAGVAKVVVGMVDPNPLVAGGG 155 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L GI ++ + ES A++ R + KR LK A++ D I S + Sbjct: 156 IARLRAAGIEVLVGVEESACHQLNEAFVHRILYKRPLGILKYAMTLDGKIATTSGHSAWV 215 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T ++++VH LRA DAI+VG TV D+P LT L+ H+P+R+++ H L + Sbjct: 216 TSQEARSEVHQLRAACDAIIVGGNTVRQDNPYLTSH--HLEAHNPLRVVMSRHLNLPESA 273 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + KTA +++ + +P + + I+ + L RG S+L E Sbjct: 274 HLWKTADAPTLVLTQKGANPDFQELLLNQGVEIVELTSLTPDNAMAYLYERGFCSVLWEC 333 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349 G +A S I V ++ + + +IG P+P+ + + VR GSD Sbjct: 334 GGTLAASAIAQGAVQKVLAFIAPKIIGGSIAPTPVGDLGFTTMTEALSLERVRWRVVGSD 393 Query: 350 VCLE-YIGKNLCLQ 362 +E Y + Q Sbjct: 394 CLVEGYFSQKANSQ 407 >gi|228909942|ref|ZP_04073763.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 200] gi|228849777|gb|EEM94610.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 200] Length = 379 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|299538422|ref|ZP_07051705.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis ZC1] gi|298726009|gb|EFI66601.1| riboflavin biosynthesis protein ribD [Lysinibacillus fusiformis ZC1] Length = 370 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 191/365 (52%), Gaps = 10/365 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D ++M AL + G T+ NP V +IVK+G+++G G+ G PHAEV A Sbjct: 1 MMNVDEKYMQLALDLAASAKGNTNPNPLVGAVIVKNGVIVGTGLHRKAGEPHAEVHAFRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GAT YVTLEPCSHYG++PPCA + E G+ RVVV + DP+ V+GRG+Q L Sbjct: 61 AGEHAMGATLYVTLEPCSHYGKTPPCANLVKESGVSRVVVAMQDPNPAVAGRGIQLLQDA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI+V+ ++E + + ++ + R + K A++ D I S +TG ++ Sbjct: 121 GIVVEVGVLEQQARRLNERFIHNMLTHRPFVISKFAMTLDGKIATHTGHSKWVTGEAARE 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + D ILVG+GTV+AD+P LT RL +P RII+D + ++ ++ T Sbjct: 181 DVHNIRHEIDGILVGVGTVIADNPSLTTRLKQGYGKNPTRIIMDSSLRTPDNANVLNTED 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 +++ +++ F +K + ++ + + ++L L G+T +L+EGG+ Sbjct: 241 APTILVCSDDVSQEKIHLFTEKGVTVLPVQKNEYGLQIDEMLEKLYMHGITDILLEGGSK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352 + SF+ +D ++Y + V+G +P N D G D+ + Sbjct: 301 INASFLQQGAIDKYVVYIAPKVLGGKLSLTPFAGYNPSLMDEAWNVEFASFDKIGEDLRI 360 Query: 353 EYIGK 357 K Sbjct: 361 IAYPK 365 >gi|210621234|ref|ZP_03292540.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275] gi|210154845|gb|EEA85851.1| hypothetical protein CLOHIR_00483 [Clostridium hiranonis DSM 13275] Length = 384 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 182/364 (50%), Gaps = 11/364 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL ++ VG + NP V +IVK+G +IG G G HAE AL E + Sbjct: 23 KYMQLALENAKKGVGFVNPNPMVGAVIVKNGKIIGEGYHKKYGGLHAERNALNNCSENPK 82 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 AT YVTLEPC HYG++PPC IIE I++VV+ DP+ ++SG+ L L ++GI + Sbjct: 83 DATMYVTLEPCCHYGKTPPCTDAIIENKIKKVVIASLDPNPKMSGKSLDILKKRGIKVEK 142 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+EG + K+ + K A++ D I S ITG ++ V R Sbjct: 143 GLLENEGDKLNETFRKFITTKKPFVLFKYAMTMDGKIATKINESKWITGEEARLNVQKTR 202 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + I+VG+ TV+ D+P L C++ +P+RII D + + + SKI+ TA P II Sbjct: 203 HKYSGIMVGVDTVIIDNPMLNCKIE--NGLNPIRIICDTNLRTPIGSKIVSTAKEIPTII 260 Query: 248 VTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T +DD + + +K I+ DL+ L++ L + + S+L+EGGA +A S Sbjct: 261 ATCSDDEIKKEQYIEKGCEILQIKIKKKKIDLQDLMSKLGEKKIDSILLEGGATLAWSAF 320 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGKNL 359 +VD I Y + + G G + L EG FG D +E Sbjct: 321 ERGIVDKIQAYIAPKIFGGNGKTAVLGEGIDFPKDAIMLKNSEIFRFGDDFMIESDVTYK 380 Query: 360 CLQE 363 C QE Sbjct: 381 CSQE 384 >gi|323693355|ref|ZP_08107571.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673] gi|323502599|gb|EGB18445.1| riboflavin biosynthesis protein [Clostridium symbiosum WAL-14673] Length = 370 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 11/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H G+ PPC + I+ GI RVVV DP+ V G+G++ L + G+ + Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILRAGISRVVVGSADPNPLVGGKGIRILREHGVSV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + + + +K A++ D I S ITG +++ V Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + AI+ G+GTV++DDP LTCR +P+RII D + ++++ TA AP Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCR-GVRGGKNPVRIICDTRLRTPPAARVVATAGQAPT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I T DDP + +++ +++ + DL++L+ L +G+ S+L+EGG + + Sbjct: 243 VIATCCDDPERHMVYQEAGCSVLTVKEKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + S +V Y + ++G +P+E R G D +E Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359 >gi|229152312|ref|ZP_04280505.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550] gi|228631274|gb|EEK87910.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus m1550] Length = 379 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|148264237|ref|YP_001230943.1| riboflavin biosynthesis protein RibD [Geobacter uraniireducens Rf4] gi|146397737|gb|ABQ26370.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Geobacter uraniireducens Rf4] Length = 368 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 13/370 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + F + M A+ ++ +G T+ NP+V C+IVKDG V+G G G PHAEV AL + Sbjct: 1 MEHFHEKMMKRAIVLAKRGIGRTAPNPTVGCVIVKDGAVVGEGWHKKAGTPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGA YVTLEPC+H+G++PPCA +I + RV + + DP+ RV G G+ L Sbjct: 61 AGEMARGADVYVTLEPCAHFGKTPPCADALIAAKVCRVHIGMVDPNPRVCGEGISMLRSA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++E + ++ + LK A++ D AG S IT S+ Sbjct: 121 GIEVVVSVLEDNCRSLNEPFIKHMTTGLPFVILKSAMTLDGKTATAGKDSKWITSDKSRQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DAI+VG+GTV+ADDP LT R+ P+R+I+D ++ L S+++ Sbjct: 181 YVHKLRAKLDAIMVGVGTVMADDPLLTSRIPA--GRDPLRVIVDSTLRIPLSSQVLHVDS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 A +I T +DD A +++ C DL L L G GV SLL+EGG A Sbjct: 239 PAKTVIATISDDEAQAARITASGADVLRCRQKNGRVDLHDLFVKLGGLGVQSLLLEGGGA 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +A + L+D + + + ++G G+ P +E + GSD+ + Sbjct: 299 LAGEALRCGLIDKCMFFYAPKLVGGEGL-GPFSGKGVELMADAITLKNISITKIGSDILV 357 Query: 353 EYIGKNLCLQ 362 + +N CLQ Sbjct: 358 QGYPENACLQ 367 >gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Shigella boydii ATCC 9905] Length = 367 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LR+QS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 182 RLRSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|228922861|ref|ZP_04086159.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836916|gb|EEM82259.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 379 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 132 TTGILEAEALLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKAKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|228992853|ref|ZP_04152778.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM 12442] gi|228766902|gb|EEM15540.1| RibD (Riboflavin-specific deaminase) [Bacillus pseudomycoides DSM 12442] Length = 373 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 6 DQEYMRIALQLAQSTAGQTSPNPMVGAVVVKDGNIVGMGAHLLAGEEHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YVTLEPCSH+G++PPC +IE ++RVV+ D + VSG G + L + GI + Sbjct: 66 ANGSTVYVTLEPCSHFGKTPPCCDLLIEKKVKRVVIATLDCNPLVSGSGAKRLQKAGISV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + K +T+K A+S D I S ITG +++ VH Sbjct: 126 TTGVLEEEATALNRYFFHYMKTKLPFVTIKTAMSLDGKIATTTGESKWITGEVARTDVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT RL P+RIILD H + L S +I + Sbjct: 186 YRHTHDAILIGVNTVIADNPSLTTRLPNG-GKHPIRIILDTHLRTPLSSHVITDEMAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + + ++++ +++ LL +L + + SL VEGG +V SF+ Sbjct: 245 IIVGKDVNKEKIAGYESQAVSVLQMKTSQIEIRDLLLLLGEKQILSLFVEGGQSVHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + I+ Y S +IG P+ K + G D+ + +N Sbjct: 305 ETKCFNEIVTYISPKLIGGKDAPTMFGGTGFIKLQDAISLQIQEMKQIGDDIKIVASVRN 364 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 365 EVPACLQEL 373 >gi|167768613|ref|ZP_02440666.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1] gi|167710137|gb|EDS20716.1| hypothetical protein CLOSS21_03172 [Clostridium sp. SS2/1] Length = 361 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 183/353 (51%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ ++ G T+ NP V +IVKD VIG G G HAE AL+ E+ +GA Sbjct: 1 MRRAIELAKKGCGYTNPNPLVGAVIVKDQKVIGEGYHEKIGGLHAERNALKNCIEDPKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPC HYG++PPC + +IE GI++V V DP+ +V+G G++ L+ GI + + Sbjct: 61 EIYVTLEPCCHYGKTPPCTEALIEAGIKKVYVGNLDPNPKVAGGGIKILNDHGIETETGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + + + LK A++ D I A S ITG ++ VH LR Q Sbjct: 121 LEEECRQLNDIFFHYIQNDIPYTALKYAMTLDGKIATATGESKWITGEEARRHVHTLRHQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+ GIGTVLADDP L R+ + P+R+I D + ++S S I+KTA P II T Sbjct: 181 YAAIMAGIGTVLADDPMLNARIEH--GNDPIRVICDSNLRISEGSNIVKTAREIPTIIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + D +K I+ +D +K++L L + S+LVEGG + S I + Sbjct: 239 ISKDQEKIAKLEQKGCKILKTSEQDGKVNVKEVLKQLRNMEIDSVLVEGGGILNESLIKN 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 V + Y + + G +P+E +E+ F ++ G+D+ LE Sbjct: 299 DCVHKVYAYIAPKLFGGEKAKTPVEGKGIERIQEALVFDELKATPLGNDILLE 351 >gi|307153764|ref|YP_003889148.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822] gi|306983992|gb|ADN15873.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7822] Length = 369 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 190/356 (53%), Gaps = 8/356 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+FD M + +R +G TS NP V +IV++ ++G G G PHAEV AL A Sbjct: 10 SAFDREMMQRCITLARKALGATSPNPMVGAVIVREQEIVGEGFHPGAGQPHAEVFALSVA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+A+GAT Y+ LEPC+HYGR+PPC + +I+ GI +V+V + DPD RVSG+G++ L++ G Sbjct: 70 AEKAKGATIYINLEPCNHYGRTPPCTEALIKAGIAKVMVGMIDPDPRVSGKGIERLTEAG 129 Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E E ++ R + +R LK A++ D I S +TG S+ Sbjct: 130 IEVVAGIEEEACRRLNEGFIHRVLYQRPFGILKYAMTLDGKIAATSGHSAWVTGEASRRI 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA+++G TV D+P LT G+ H+P+R+++ L L++ + +T + Sbjct: 190 VHQLRAACDAVIIGGNTVRQDNPHLTTH--GVSSHNPLRVVMSRSLNLPLEANLWETDKV 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V+ E +P L K+ + +I + +++ L RG S+L E G +A S Sbjct: 248 PTVVFTEEGINPPLQKQLLKRKVEVIELEVLTPTQVMQHLYQRGFCSVLWECGGTLAASA 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I +V ++ + + +IG PSP+ + L+K V +D +E Sbjct: 308 ITEGMVQKVMAFIAPKIIGGESAPSPVGDLGLDKMSNALQLQRVALQRVDNDFVIE 363 >gi|229081368|ref|ZP_04213871.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2] gi|228701990|gb|EEL54473.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock4-2] Length = 373 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 365 EVTKCLQEL 373 >gi|296503905|ref|YP_003665605.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] gi|296324957|gb|ADH07885.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] Length = 365 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L+D +ILY + +IG PS + + K + D+ +GK+ Sbjct: 303 ENKLMDKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 353 >gi|78222833|ref|YP_384580.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Geobacter metallireducens GS-15] gi|78194088|gb|ABB31855.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Geobacter metallireducens GS-15] Length = 370 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 199/371 (53%), Gaps = 14/371 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M VS + M AL +R G TS NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MDVSP--EKIMKRALALARRGKGKTSPNPAVGCVIVRDGAIVGEGWHRKAGTPHAEVHAL 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGA YVTLEPCSH+G++PPCA ++E G+ RV V + DP+ +VSGRG++ L Sbjct: 59 RQAGELARGADVYVTLEPCSHFGKTPPCADALVEAGVGRVFVGMVDPNPKVSGRGIERLR 118 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI +V + E+E + ++ + LK A++ D A S IT S Sbjct: 119 VAGIEVVTGIREAECRRLNEPFVKHVTTGLPFVILKSAMTMDGKTATASGDSRWITNEKS 178 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LR+ DAI+VG+GTVLADDP+LT R+ + P+R+++D ++ ++++ Sbjct: 179 RRYVHKLRSMVDAIMVGVGTVLADDPQLTARIP--RGKDPVRVVVDSSLRIPSGARMLHQ 236 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 A ++ T ++D + ++ C DL+ LL L RGV S+L+EGG Sbjct: 237 ESPATTVVATVSEDRNRIVKLESAGAEVLRCHAVMGRIDLRDLLARLGARGVQSILLEGG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 + +A + + L+D +L+ + +G E+ V FG DV Sbjct: 297 SELAGEALRAGLIDKCVLFYAPKFLGGAAGLGLFGGPSAERMDGCCRLKDVSVRRFGDDV 356 Query: 351 CLEYIGKNLCL 361 +E ++LCL Sbjct: 357 MIEAYPEDLCL 367 >gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus Ab9] gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus Ab9] Length = 360 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 118/329 (35%), Positives = 179/329 (54%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ Sbjct: 2 EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G+T +VTLEPCSHYG++PPC + II+ GI++V + ++DP+ +VSG G++ L + GI V Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 MME E + + K + LK A+S D I S IT S+ H + Sbjct: 122 VGMMEKEARKLNEIFFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G +P+RII+D ++ L+S +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLNSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNKRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 +VD ++ + S +IG +P+E Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|320538258|ref|ZP_08038144.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421] gi|320144885|gb|EFW36615.1| riboflavin biosynthesis protein RibD [Treponema phagedenis F0421] Length = 362 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 121/353 (34%), Positives = 180/353 (50%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+F++ G TS NP V +IVK+G +IG G G PHAE AL E GA Sbjct: 1 MRTALQFAKKGAGWTSPNPMVGAVIVKNGKIIGSGFHERYGEPHAERNALRACTETPAGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H+G+ PPC ++E GI RVV+ DP+ V G+G++ L + GI + + + Sbjct: 61 TLYVTLEPCCHHGKQPPCVDAVLESGITRVVIGSADPNPLVGGKGVRRLKESGIEVSENI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + KR + +K A++ D I S IT ++ VHL R + Sbjct: 121 LKEECDRLNEVFFHYIQTKRPFVVMKYAMTMDGKIAAVTGNSKWITEEKAREHVHLQRHR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+GTVLADDP LTCR+ +P+RII D + + L ++II+TA P II T Sbjct: 181 YTAIMVGVGTVLADDPLLTCRI--KDGKNPIRIICDTNLRTPLSAQIIRTAKKVPTIIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + A+ I+ + DL+ L+ +L + SLL+EGG + + + S Sbjct: 239 CCTEKEKQFAYLHAGCRILTVPEKNGRVDLQNLMPMLGEEKIDSLLLEGGGTLNWAALES 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 +V + Y + ++G +P+E VR G D +E Sbjct: 299 GIVQKVHAYIAPKLLGGQSAKTPVEGIGFHSPDSSVRLINSSITQLGEDFLIE 351 >gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis serovar finitimus YBT-020] Length = 370 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R+ILD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V ++ + ++ +NI I + +++ +L +L + + SL VEGG V SF+ Sbjct: 242 IFVGKDVNKEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ + G D+ + ++ Sbjct: 302 QTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVAHAQS 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTECLQEL 370 >gi|75907679|ref|YP_321975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Anabaena variabilis ATCC 29413] gi|75701404|gb|ABA21080.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Anabaena variabilis ATCC 29413] Length = 396 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 117/362 (32%), Positives = 188/362 (51%), Gaps = 8/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD R M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 35 NDFDVRMMQRCLELARRALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 94 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ V G G++ L G Sbjct: 95 GELARGATVYVNLEPCNHYGRTPPCSEGLIAAGVAKVVVGMVDPNPLVGGGGIERLRGAG 154 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ + + + ++ R + K+ LK A++ D I S +T ++ + Sbjct: 155 VEVLVGVEMAACQQLNEGFVHRILHKKPLGILKYAMTLDGKIATVSGHSAWVTNPSARGE 214 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT G+ H+P+R+++ L +D+ + +TA Sbjct: 215 VHQLRAACDAVIVGGNTVRRDNPYLTSHQEGV--HNPLRVVMSRQLDLPVDAHLWETAEA 272 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ +P ++K + I+ + +++ L RG S+L E G +A S Sbjct: 273 PTLVLTQVGANPDFQKLLQQKGVEIVELASLTPEFVMSHLYDRGFCSVLWECGGTLAASA 332 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 I V I+ + + +IG P+P+ + + VR GSD +E Sbjct: 333 IAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFDTMTEALILERVRWRVVGSDCLVEGYLP 392 Query: 358 NL 359 +L Sbjct: 393 SL 394 >gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514] gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561] gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513] gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514] gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561] gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513] Length = 360 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 120/329 (36%), Positives = 181/329 (55%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E Sbjct: 2 EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 MME E + ++ K + LK A+S D I S IT S+ H + Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G +P+RII+D ++ LDS +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +VD ++ + S +IG +P+E Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli OP50] Length = 361 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LLRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|228954395|ref|ZP_04116421.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805327|gb|EEM51920.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 373 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 6 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 66 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 126 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTALSLDGKTATVTGESKWITGEEARADVHQ 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 186 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 245 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 305 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 364 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 365 EVTKCLQEL 373 >gi|206971231|ref|ZP_03232182.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] gi|206734003|gb|EDZ51174.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] Length = 370 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|30022196|ref|NP_833827.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|228960377|ref|ZP_04122030.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pakistani str. T13001] gi|229111585|ref|ZP_04241136.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15] gi|229129391|ref|ZP_04258362.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4] gi|29897753|gb|AAP11028.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|228653996|gb|EEL09863.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-Cer4] gi|228671967|gb|EEL27260.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus Rock1-15] gi|228799401|gb|EEM46365.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar pakistani str. T13001] Length = 379 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1] gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1] Length = 367 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D ++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|229163049|ref|ZP_04291005.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803] gi|228620455|gb|EEK77325.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus R309803] Length = 379 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVQRVVIATLDCNPLVSGNGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGILEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPSSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ +NI I + ++ +L +L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYEFENIAIFQMKTKQIEVQDILDLLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ + G D+ + +N Sbjct: 311 QTNNFNEIVTYISPKLIGGKDAPTLFGGNGFATLQDALSLEIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|307137057|ref|ZP_07496413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli H736] Length = 361 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LLRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|229192323|ref|ZP_04319287.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876] gi|228591103|gb|EEK48958.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus ATCC 10876] Length = 379 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGIGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEQARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAIL+G+ TV+AD+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILIGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280] gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280] Length = 367 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ ++D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTHEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355] Length = 367 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ D Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I L ++ + D + + DL L+ +L R + S+ VE Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + I + LVD +I+Y + ++G + L + F G DV Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDIRQVGDDV 360 Query: 351 CLEYIGK 357 L + Sbjct: 361 RLTLTPQ 367 >gi|260438155|ref|ZP_05791971.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM 2876] gi|292809343|gb|EFF68548.1| riboflavin biosynthesis protein RibD [Butyrivibrio crossotus DSM 2876] Length = 360 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 125/360 (34%), Positives = 185/360 (51%), Gaps = 12/360 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V +IVKDG +IG G A G HAE A++ + Sbjct: 3 DRDYMLRAISLAKKGTGYTSPNPLVGAVIVKDGRIIGEGYHAIYGDLHAERNAIKNLTVD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPC HYG+ PPC + I+ GI +VV+ DP+ VSGRG +L GI + Sbjct: 63 AKGATIYVTLEPCCHYGKQPPCTEAILAAGITKVVIGSRDPNPLVSGRGADFLRSHGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ M E + EK ++ +K A+S D I S +T S+N+V Sbjct: 123 IEDFMREECDELNPIFFHYITEKTPYVVMKYAMSMDGKIATRTGSSRYVTNEFSRNEVQK 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R + I+ GIGTVLADDP L R+ GL SP+RII D ++ L+S+I +TA Sbjct: 183 MRHKYRGIMAGIGTVLADDPMLNTRIEGL--RSPVRIICDSELRIPLNSRICQTAGEYET 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II N A I ++ +L +L+ +L + S+L+EGG + S Sbjct: 241 IIACGNAPQNRISALEALGITVLQVPDETGKVNLTELMYVLHDMKIDSILLEGGGTLNES 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + + LV+ I ++ + VIG SP+E ++ F + + F D+ LEY Sbjct: 301 MLQADLVNEIKVFIAPKVIGGALAKSPVEGLGIDDIKDAVVFKLINVEKFDDDILLEYRR 360 >gi|260588249|ref|ZP_05854162.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583] gi|260541387|gb|EEX21956.1| riboflavin biosynthesis protein RibD [Blautia hansenii DSM 20583] Length = 362 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 185/353 (52%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ ++ G TS NP V +IVK+G +IG+G G HAE AL E +GA Sbjct: 1 MKIALQLAKKGCGFTSPNPMVGAVIVKEGRIIGQGWHEKYGEAHAERNALAACTENPKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC HYG+ PPC I+E GI RVV+ DP+ VSG+G+Q L ++GI + + + Sbjct: 61 TMYVTLEPCCHYGKQPPCINAIMEAGIERVVIGSGDPNPLVSGKGIQILKKQGILVTEHI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + + + KR + +K A++ D I S +TG ++ V R + Sbjct: 121 LQEDCERLNEVFFHYIQTKRPFVVMKYAMTMDGKISTKTGASKWVTGETARRHVAQQRHR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+ GIGT+L DDP+LTCR+ G +P+RII D ++ L + ++ TA P II T Sbjct: 181 YAAIMAGIGTILTDDPQLTCRIEG--GKNPIRIICDTTLRIPLSANVVSTAKQIPTIIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 D + KK +++ + R DL++L+ +L + + S+L+EGG + + ++S Sbjct: 239 CCRDAERCALYEKKGCHVLLVEERNGHVDLEQLMYLLGEKQIDSILLEGGGTLNWAALSS 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353 +V + Y + + G +P+E + R G D +E Sbjct: 299 GIVQKVQAYIAPKLFGGQAAKTPIEGEGICYPTAAFRLKNSCVLPLGEDFLIE 351 >gi|209527094|ref|ZP_03275608.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328] gi|209492434|gb|EDZ92775.1| riboflavin biosynthesis protein RibD [Arthrospira maxima CS-328] Length = 388 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 119/363 (32%), Positives = 184/363 (50%), Gaps = 8/363 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL Sbjct: 8 SVSEFDRQMMRNCLNLAKEGLGKTAPNPLVGCVIVRDDQIIGEGFHPGPGQPHAEIFALR 67 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L Q Sbjct: 68 SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLRQ 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ + ES A++ R + K++ LK A++ D I S +TG I++ Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGILKYAMTLDGKIATDTGHSAWVTGAIAR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH LR DA++VG TV D+P LT G E +P+R+++ L +++ T+ Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHLTTH--GQGEPNPLRVVMSRSLDLPSSARLWDTS 245 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 A ++ P RKK + ++ K+++ R S+L E G +A Sbjct: 246 EAATIVFTEVGSRPDFQEHLRKKGVEVLEFAPLTPAKVMSYFYERQFLSVLWECGGRLAS 305 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 I V I+ + + +IG PSP+ + + V GSD +E Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTEALSLEAVSLRAIGSDYLIEGY 365 Query: 356 GKN 358 N Sbjct: 366 LSN 368 >gi|296504605|ref|YP_003666305.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] gi|296325657|gb|ADH08585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis BMB171] Length = 370 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALSLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|323484047|ref|ZP_08089417.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum WAL-14163] gi|323402489|gb|EGA94817.1| hypothetical protein HMPREF9474_01166 [Clostridium symbiosum WAL-14163] Length = 370 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 11/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL +R GL + NP V +IVK+G VIGRG G PHAE AL E Sbjct: 4 DEKYMRMALSLARKGCGLAAPNPMVGAVIVKEGRVIGRGYHQKYGGPHAEQNALSSCTEP 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GA YVTLEPC H G+ PPC + I++ I RVVV DP+ V G+G++ L + G+ + Sbjct: 64 PQGAVMYVTLEPCCHSGKQPPCVKAILQAEISRVVVGSADPNPLVGGKGIRILREHGVSV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + + + +K A++ D I S ITG +++ V Sbjct: 124 TEDILREECAKLNEVFFHYIRTEHPFVVMKYAMTMDGKIAAVTGESKWITGEAARHHVQK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + AI+ G+GTV++DDP LTCR +P+RII D + ++++ TA AP Sbjct: 184 LRHRYTAIMAGVGTVISDDPLLTCR-GVRGGKNPVRIICDTRLRTPPAARVVATAGQAPT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I T DDP + ++K +++ + DL++L+ L +G+ S+L+EGG + + Sbjct: 243 VIATCCDDPERHMVYQKAGCSVLTVREKNGHVDLRELMRKLGKQGIDSILLEGGGTLNWA 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + S +V Y + ++G +P+E R G D +E Sbjct: 303 ALESGIVQKTEAYIAPKLLGGETSKTPVEGAGFLSPGDGIVLKNSRIIRLGEDFLIE 359 >gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103] gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103] Length = 367 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DERYMARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMAGDR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ D Sbjct: 183 LRAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I L ++ + D + + DL L+ +L R + S+ VE Sbjct: 243 KLI--EQLGETWLMRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + I + LVD +I+Y + ++G + L + F G DV Sbjct: 301 GATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDLRQVGDDV 360 Query: 351 CLEYIGK 357 L + Sbjct: 361 RLTLTPQ 367 >gi|212638856|ref|YP_002315376.1| riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus flavithermus WK1] gi|212560336|gb|ACJ33391.1| Riboflavin-specific pyrimidine reductase/deaminase [Anoxybacillus flavithermus WK1] Length = 358 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 130/355 (36%), Positives = 191/355 (53%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL+ ++ G TS NP V ++VK G ++G G G PHAEV AL AGE Sbjct: 1 MDEQYMRFALQLAQSARGQTSPNPLVGAVVVKHGEIVGFGAHLKAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GAT YVTLEPCSHYGR+PPCA +IE ++RVVV DP+ V+G+G++ L + GI Sbjct: 61 KAEGATVYVTLEPCSHYGRTPPCADLLIEKKVKRVVVATTDPNPLVAGKGIEKLKRAGID 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +++ E + K ++TLK A+S D I S IT ++ VH Sbjct: 121 VTVGVLKEEADALNEMFFHYISTKTPYVTLKYAMSLDGKIATKTGESKWITSEDARRDVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAI+VG+GT+LADDP LT R G + P+RI+LD H + L + ++ Sbjct: 181 RERRMHDAIVVGVGTILADDPSLTVRF-GYEGKQPIRIVLDTHLRTPLHANVVTDQKAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+V ++ + ++II + D+ LL L R V S+ VEGGA V SF Sbjct: 240 WIVVGQHVTEEQIKPYEHAGVHIIRMNENKIDIPFLLHELGKRNVMSIFVEGGAHVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 ++SR V +I Y + ++IG PS + + +R + GSD+ + Sbjct: 300 LHSRSVQQVIAYIAPMLIGGNEAPSAIGGEGFGRMMDALRLQVKHVERIGSDIKI 354 >gi|152976519|ref|YP_001376036.1| riboflavin biosynthesis protein RibD [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025271|gb|ABS23041.1| riboflavin biosynthesis protein RibD [Bacillus cytotoxicus NVH 391-98] Length = 370 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VK+G ++G G G HAEV AL AG Sbjct: 3 DQEYMKIALQLAQSTAGQTSPNPMVGAVVVKNGKIVGMGAHLRAGEEHAEVHALRMAGAH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC +I+ ++RVV+ D + V+G G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCNLLIQKKVKRVVIATLDSNPLVAGNGKKKLEEAGIYV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +TLK A+S D I S ITG +++ VH Sbjct: 123 TTGILEEEARSLNRYFFHYMKTKRPFVTLKTAMSLDGKIATTTGESKWITGDAARDDVHH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ T++AD+P LT RL +P+RIILD H + L S ++ + Sbjct: 183 YRHTHDAILVGVNTIIADNPSLTTRLPNG-GKNPIRIILDTHLRTPLLSHVVTDRVAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV +N L + +++++ + +++ LL++L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKNVQKDQILQYESEHVSVFQMNRGRIEIQDLLSLLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ G+++ G+D+ + +N Sbjct: 302 EANGFNEIVTYISPKLIGGKDAPTWFGGTGFIQLQDALSLQFQEITQIGNDIKVIARKRN 361 Query: 359 ---LCLQE 363 C QE Sbjct: 362 EVPSCSQE 369 >gi|229047804|ref|ZP_04193384.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676] gi|228723596|gb|EEL74961.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH676] Length = 379 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRTLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKEEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQNALFLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|284051945|ref|ZP_06382155.1| riboflavin biosynthesis protein [Arthrospira platensis str. Paraca] gi|291567830|dbj|BAI90102.1| riboflavin biosynthesis protein RibD [Arthrospira platensis NIES-39] Length = 387 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 117/369 (31%), Positives = 185/369 (50%), Gaps = 8/369 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 VS FD + M L ++ +G T+ NP V C+IV+D +IG G G PHAE+ AL Sbjct: 8 SVSEFDRQMMRYCLNLAKEGLGKTAPNPLVGCVIVRDQKIIGEGYHPGPGQPHAEIFALR 67 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGAT YV LEPC+HYGR+PPC++ +I+ G+ +VV + DP+ V G+G+ L + Sbjct: 68 SAGELARGATVYVNLEPCNHYGRTPPCSEALIKAGVAKVVAGMVDPNPLVGGQGIAKLCE 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ + ES A++ R + K++ K A++ D I S +TG I++ Sbjct: 128 AGIEVIVGVEESACLKLNEAFVHRIIYKQTFGIFKYAMTLDGKIATDIGDSAWVTGAIAR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH LR DA++VG TV D+P LT G E +P+R+++ L +++ T+ Sbjct: 188 QEVHRLRVACDAVIVGGNTVRRDNPHLTTH--GQGEPNPLRVVMSRSLDLPSSARLWDTS 245 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 A ++ P RK+ + ++ K+++ R S+L E G +A Sbjct: 246 EAATIVFTKVGSRPDFQEHLRKRGVEVVEFAPLTPTKVMSYFYERQFLSVLWECGGRLAS 305 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 I V I+ + + +IG PSP+ + + V GSD +E Sbjct: 306 EAITQGCVHKILAFIAPKIIGGQAAPSPVGNLGFSQMTQALSLEGVSLRAIGSDYLIEGY 365 Query: 356 GKNLCLQEL 364 N + L Sbjct: 366 LSNGRSRTL 374 >gi|229071616|ref|ZP_04204834.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185] gi|228711552|gb|EEL63509.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus F65185] Length = 379 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIERGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E++ + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEADAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKYIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|326941086|gb|AEA16982.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis serovar chinensis CT-43] Length = 365 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGAT YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGATIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L++ +ILY + +IG PS + + K + D+ +GK+ Sbjct: 303 ENKLMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 353 >gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 EDL933] gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. Sakai] gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4113] gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4401] gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4501] gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4486] gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4196] gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4076] gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC869] gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC508] gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. EC4024] gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4206] gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4045] gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4042] gi|209395713|ref|YP_002269058.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4115] gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. TW14588] gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. TW14359] gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. FRIK2000] gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. FRIK966] gi|291281320|ref|YP_003498138.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin biosynthesis protein RibD [Escherichia coli O55:H7 str. CB9615] gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli O157:H7 str. EDL933] gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli O157:H7 str. Sakai] gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4196] gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4113] gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4076] gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4401] gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4486] gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4501] gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC869] gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC508] gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4206] gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4045] gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4042] gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. EC4115] gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Escherichia coli] gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. TW14588] gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia coli O157:H7 str. TW14359] gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin biosynthesis protein RibD [Escherichia coli O55:H7 str. CB9615] gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli O157:H7 str. EC1212] gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. G5101] gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H- str. 493-89] gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H- str. H 2687] gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str. 1044] gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylaminouracil reductase [Escherichia coli O157:H7 str. 1125] Length = 367 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus JW 200] gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus JW 200] Length = 360 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 118/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL+ + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ Sbjct: 2 EEYMKRALKLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG ++ L + GI + Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQ 121 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 MME E + ++ K + LK A+S D I S IT S+ H + Sbjct: 122 VGMMEKEARKLNEIFVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G SP+RII+D + L S +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRTPLASNVIRDKAAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNSVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +VD ++ + S +IG +P+E Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718] gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718] Length = 367 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QEEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HHIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 2a str. 301] gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 2a str. 2457T] gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a str. 301] gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a str. 2457T] gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella flexneri 2002017] gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str. 2457T] gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71] gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671] gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71] gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218] gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304] Length = 367 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|118445111|ref|YP_879181.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT] gi|118135567|gb|ABK62611.1| riboflavin biosynthesis protein RibD [Clostridium novyi NT] Length = 377 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 191/369 (51%), Gaps = 14/369 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A+ S+ VG T NP V +IVKD +IG+G G HAEV AL+ A E+ Sbjct: 9 KFMKKAIELSKLGVGYTYPNPLVGAVIVKDNKIIGQGYHERFGGAHAEVNALKNATEDVT 68 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA I++ GI+ V+V + DP+ V+GRG+ L + GI ++ Sbjct: 69 GATMYVTLEPCSHYGKTPPCANTIVKSGIKEVIVGMRDPNELVAGRGINILKENGIKVIV 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E K ++ K LK A++ D I S I+ +S+ VH +R Sbjct: 129 GVFEEEIKKINEIFIKYITTKEPFCILKTAMTLDGKIATVMGDSKWISNELSREYVHEIR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + I+VGIGTVL DDP LT RL RII+D ++ L+SK++ II Sbjct: 189 HRVAGIMVGIGTVLKDDPSLTTRLKEKTGRDATRIIVDSKGRIPLNSKVLNLDSKEKTII 248 Query: 248 VTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T D + +KK +I + DLK L+ L + S+L+EGG + +S Sbjct: 249 ATTKLADKLKIEEIKKKGAEVIITPIKNGKVDLKFLVIELGKMNIDSILLEGGGTLNYSA 308 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 +N +VD +I + + +IG + + ++K + F DV +E Y+ Sbjct: 309 LNEGIVDKVISFIAPKIIGGQDAKTSVAGEGIKKISDAVTLHDIEISNFQEDVVIEGYVK 368 Query: 357 KN--LCLQE 363 K +C QE Sbjct: 369 KENKVCSQE 377 >gi|229013322|ref|ZP_04170462.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048] gi|228747915|gb|EEL97780.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides DSM 2048] Length = 379 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 187/368 (50%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRILEEAGIKV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ +E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLGAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVSKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370 Query: 359 ---LCLQE 363 CLQE Sbjct: 371 EVTECLQE 378 >gi|218230924|ref|YP_002368914.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] gi|218158881|gb|ACK58873.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] Length = 370 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 124/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEETRIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + ++ Y S +IG P+ K + G D+ + +N Sbjct: 302 KTNNFNEVVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|294498727|ref|YP_003562427.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551] gi|294348664|gb|ADE68993.1| riboflavin biosynthesis protein RibD [Bacillus megaterium QM B1551] Length = 363 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 123/356 (34%), Positives = 199/356 (55%), Gaps = 10/356 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ ++ G T NP V +IV D ++G G G PHAE+ AL AGE+A Sbjct: 5 EFYMNIALQNAKATKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GATAYVTLEPCSH+GR+ PCA+ ++E G+++VV+ DP+ V+G G++ L GI ++ Sbjct: 65 KGATAYVTLEPCSHHGRTGPCAEALVEAGVKKVVIATLDPNPLVAGNGVKILENAGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E + + V K+ ++LK A++ D I A S IT ++ VH L Sbjct: 125 TGVCEEESRQMNEVFNKYIVTKKPFVSLKSAITLDGKIATASSHSKWITSEEARLDVHQL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ ILVG+ TV+ D+PELT R+ G SP+RI++D ++ L+SK+ +L + Sbjct: 185 RHETAGILVGVNTVIKDNPELTTRIEG--GRSPIRIVMDSKLRMPLESKLATDSLAPTWV 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ K+ + + D L+ +L+IL + V+SLL+EGG V +F+ Sbjct: 243 FTSQGYSKEKKEQLEKQGVEVFVTSGEDKVNLEDMLSILGEKFVSSLLIEGGGEVNAAFL 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 +RL+D ++LY + + G P+ LE +EK + V + + IGK+ Sbjct: 303 ENRLIDKLVLYMAPKLSGGKEAPTFLEGKGVEKMWDAVDVERL----SVTSIGKDF 354 >gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22] gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171] gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O103:H2 str. 12009] gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22] gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171] gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Escherichia coli O103:H2 str. 12009] gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010] Length = 367 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWSELDEQTQVLYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20] gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW] gi|1172932|sp|P44326|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd KW20] gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW] Length = 372 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESTVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ +P F II+ LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIIFPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA ++ S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLSGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|310827884|ref|YP_003960241.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612] gi|308739618|gb|ADO37278.1| riboflavin biosynthesis protein RibD [Eubacterium limosum KIST612] Length = 367 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 188/368 (51%), Gaps = 13/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G + NP V +IVK+G VIGRG G PHAE A+ E+ Sbjct: 3 DQDYMRLALEEAWKGCGFVNPNPMVGAVIVKNGCVIGRGAHERYGGPHAERNAIAHCTED 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + AT YVTL PC H+G++PPC ++E GIRRVV+ DP+ V+ + ++ L Q G+ + Sbjct: 63 LQDATLYVTLTPCCHFGKTPPCTDVVLENGIRRVVIGSHDPNPLVAEKSIEILRQHGVEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E A+ R ++ +K A++ D + A S ITG +++ +VHL Sbjct: 123 TTGILQQECDALNDAFFHFIRIHRPYVVMKYAMTMDGKVATASGKSKWITGELARERVHL 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AIL GIGTVLADDP LTCR+ G P+RI+ D ++ L ++I+KTA Sbjct: 183 DRKRYAAILTGIGTVLADDPLLTCRIPG--GRDPVRIVCDTKLRIPLTAQIVKTAAKTRT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T + D ++K ++ DLK L+ L + S+L+EGG + + Sbjct: 241 IIATGSGDNKKQSLLKQKGCEVLKMTVENGRIDLKALMRRLGEMAIDSILMEGGPQMNSA 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356 + S +V+ I Y + + G +P+ + R G D+ LE Sbjct: 301 ALESGIVNKIQAYVAPKLFGGQQAKTPVGGTGVGSPEAAWRLSAPVITKLGQDILLESEV 360 Query: 357 KNLCLQEL 364 + CLQEL Sbjct: 361 VS-CLQEL 367 >gi|291562115|emb|CBL40931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [butyrate-producing bacterium SS3/4] Length = 369 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 180/366 (49%), Gaps = 20/366 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ +G TS NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DRDYMLRAIELAKGGLGWTSPNPLVGAVIVKDGRIIGEGYHERCGELHAERNAIASLTES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC HYG++PPC + I+E I RVV+ DP+ V+G+G L G+ + Sbjct: 63 AEGATLYVTLEPCCHYGKTPPCTEAILEQKIARVVIGSRDPNPLVAGKGAAILRAAGVRV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + M E + +K ++ +K A++ D I S ITG ++ +V Sbjct: 123 EEDFMREECDALNPVFFHYITKKTPYVVMKYAMTADGKIAARTGDSKWITGESARKKVQE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q I+ GIGTVLADDP L R+ GL SP+RII D ++ +DS+I+KTA Sbjct: 183 LRHQYMGIMAGIGTVLADDPMLNVRIPGL--KSPVRIICDSGLRIPMDSQIVKTAKEYRT 240 Query: 246 IIV--------TENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVE 293 I+ + + + DL+KL+ L +G+ S+L+E Sbjct: 241 IVAYAGEHSGEGCKEAEEKEEQLHTAGVETVSVPDADGRVDLRKLMEYLGKQGIDSVLLE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGS 348 GG + + +++ +V+ I + + + G G +P+ + V+ + G Sbjct: 301 GGGTLNDAALSAGIVNEICAFIAPKIFGGAGAKTPVSGIGVAHPAEAVKLTLRQMETIGD 360 Query: 349 DVCLEY 354 D+ L Y Sbjct: 361 DLMLRY 366 >gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272] gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227] Length = 367 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ + +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGES--WFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|228902621|ref|ZP_04066772.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 4222] gi|228967148|ref|ZP_04128184.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228792517|gb|EEM40083.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar sotto str. T04001] gi|228857062|gb|EEN01571.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis IBL 4222] Length = 379 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|229031753|ref|ZP_04187746.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271] gi|228729637|gb|EEL80624.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1271] Length = 379 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKEVKRVVIATLDCNPLVSGNGKKRLEEAGIDV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEKARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R+ILD H + S +IK L+ Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVIKDGLVPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I V ++ + ++ +N+ I + +++ LL L + + SL VEGG ++ SF+ Sbjct: 251 IFVGKDVNKEKIASYESENVTIFQMKTKQIEIEDLLFFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ + II Y S I+IG P+ + G D+ + ++ Sbjct: 311 QTKHFNEIITYISPILIGGKDAPTLFGGNGFAALQDALSLEIQEMKQIGDDIKIVANARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 86-028NP] gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 86-028NP] Length = 372 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TVLADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ + F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|322377269|ref|ZP_08051761.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334] gi|321281982|gb|EFX58990.1| riboflavin biosynthesis protein RibD [Streptococcus sp. M334] Length = 366 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 188/367 (51%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMQLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S ITG ++ VH Sbjct: 123 TVGVLENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNHSKWITGEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHQVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SLL+EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYKNHGCEILSIKKKGNHIDLSDLMQHLGNMQIDSLLLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGDDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|229019323|ref|ZP_04176149.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273] gi|228742008|gb|EEL92182.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1273] Length = 379 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHMHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370 Query: 359 ---LCLQE 363 CLQE Sbjct: 371 EVTECLQE 378 >gi|229180391|ref|ZP_04307734.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W] gi|228603138|gb|EEK60616.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus 172560W] Length = 379 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 189/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Pantoea vagans C9-1] gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Pantoea vagans C9-1] Length = 366 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 183/368 (49%), Gaps = 18/368 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M+ AL +R T NP+V C+IV+DG V+G G G PHAEV AL AGE Sbjct: 1 MDERYMARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGID 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L Q P+R+I+D +++ Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQ 240 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++I ++ D L A + + DL ++ +L R + S+ VE Sbjct: 241 HRLISQPGE--TWLMRHQPDQQLWPADVTQIAVPLREQQLDLVAMMMLLGQRQINSVWVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 GA +A + + + LVD +I+Y + ++G G L + F G D Sbjct: 299 AGATLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLSQLADAPAFRFSDVRQVGDD 358 Query: 350 VCLEYIGK 357 + L + Sbjct: 359 LRLTLTPQ 366 >gi|218899272|ref|YP_002447683.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842] gi|218541932|gb|ACK94326.1| riboflavin biosynthesis protein RibD [Bacillus cereus G9842] Length = 370 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 3 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D I S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKIATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYNSKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G D+ + +N Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALSLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTECLQEL 370 >gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM 4541] gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM 4541] Length = 371 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 128/372 (34%), Positives = 194/372 (52%), Gaps = 21/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M+ A +R TS NP+V C+IV+DG V+G G G PHAEV AL Sbjct: 1 MLEQDRIYMARAFELARKGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ Sbjct: 61 AGDKARGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + +L R +I LK+A S D + S IT ++ Sbjct: 121 GIETSSNILLEQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARK 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V +LRAQ+ AIL TV+ADDP LT R + L P+RI+LD H K+ Sbjct: 181 DVQVLRAQASAILSTSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289 + + ++ T L ++ D + + + + I+ + DL L+ L R + S Sbjct: 241 TPEHQV--TQLAGECWLIRPTPDNEVTWQGQVEQVPILADENGIDLVILMMQLAKRNINS 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRD 344 + VE G +A S + LVD +I+Y + ++G+ P+ L+ NF + Sbjct: 299 IWVEAGPTLAGSLLKLGLVDELIVYIAPKLLGDTARGLVNFPA-LKSLSDAPNFEFTDVE 357 Query: 345 YFGSDVCLEYIG 356 G+D+ + Sbjct: 358 KVGNDLRVRLRP 369 >gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia kristensenii ATCC 33638] gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia kristensenii ATCC 33638] Length = 369 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L P+R+I+D H +++ + Sbjct: 184 FRAQSSAILSTSATVLADDPSLTVRWQELDADTQARYPQDTLRQPVRVIVDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G A + + + +VD +ILY + ++G + L F+ G D+ Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTSLSDAPEFVFSDVRQLGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|229134920|ref|ZP_04263727.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196] gi|228648595|gb|EEL04623.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus BDRD-ST196] Length = 379 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRKLEEVGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + + NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIAPYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370 Query: 359 ---LCLQE 363 CLQE Sbjct: 371 EVTECLQE 378 >gi|229025568|ref|ZP_04181976.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272] gi|228735750|gb|EEL86337.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH1272] Length = 370 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 191/368 (51%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 3 DQEYMALALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMCAGEEHAEVHALHMAGER 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEETGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESQWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 183 YRHMHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361 Query: 359 ---LCLQE 363 CLQE Sbjct: 362 EVTECLQE 369 >gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012] gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012] gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74] Length = 367 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LR+QS AIL TVLADDP L R + L E P+RI++D +++ Sbjct: 182 RLRSQSHAILTSSATVLADDPALIVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPG 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL +G Sbjct: 360 VCLHLVG 366 >gi|281491487|ref|YP_003353467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactococcus lactis subsp. lactis KF147] gi|281375205|gb|ADA64718.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactococcus lactis subsp. lactis KF147] Length = 362 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 188/357 (52%), Gaps = 12/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGEAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC+H G+ PPC + II+ I+RVV+ DP+ VSG+G++ + + GI + Sbjct: 64 PEGATLYVTLEPCAHQGKQPPCFEAIIKNRIKRVVIGHLDPNPLVSGKGIKAMKEAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + + ++ +K A++ D I + S ITG I++ +VH Sbjct: 124 SINVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R++ AI++G+ T++ DDP+L+ RL +P+RII D H + L SKI+ TA Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTASEIST 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T DP F K II C +LK+L L +G+ S+++EGG + S Sbjct: 242 IIATAESDPEKQAPFLKVGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + + ++ + Y + + G PSP+E +E + Y G D+ LE Sbjct: 302 ALKAGIIQKVQTYIAPKIFGGKEAPSPVEGHGIEHPNQAYLLEGAQITYLGEDILLE 358 >gi|307265418|ref|ZP_07546974.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii Rt8.B1] gi|306919532|gb|EFN49750.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii Rt8.B1] Length = 360 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/329 (36%), Positives = 183/329 (55%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ Sbjct: 2 EEYMKRALTLAEKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 MME + + ++ K + LK A+S D I S IT S+ H + Sbjct: 122 VGMMEKDARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G +P+RII+D ++ LDS +I+ +I Sbjct: 182 RGRVSAIMVGVNTVINDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + R+VD ++ + S +IG +P+E Sbjct: 300 LKERIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|228941263|ref|ZP_04103816.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974195|ref|ZP_04134765.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228980786|ref|ZP_04141091.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407] gi|228778955|gb|EEM27217.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis Bt407] gi|228785535|gb|EEM33544.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818422|gb|EEM64494.1| RibD (Riboflavin-specific deaminase) [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 379 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 12 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 251 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K G D+ + +N Sbjct: 311 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTKCLQEL 379 >gi|298490230|ref|YP_003720407.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708] gi|298232148|gb|ADI63284.1| riboflavin biosynthesis protein RibD ['Nostoc azollae' 0708] Length = 375 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 184/364 (50%), Gaps = 9/364 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S FD+ M L+ +R +G TS NP V ++V+D ++G G G PHAEV AL Sbjct: 11 MVGSEFDSLMMQWCLQLARRALGRTSPNPLVGAVVVQDREIVGEGFHPRAGEPHAEVFAL 70 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE+A GAT YV+LEPC+HYGR+PPC++ +I GI +VVV + DP+ V+G G+ L Sbjct: 71 RAAGEKAHGATIYVSLEPCNHYGRTPPCSEGLIAAGISKVVVGMVDPNPLVAGGGIARLR 130 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + E+ + ++ R V K+ LK A++ D I + S IT + Sbjct: 131 AAGIEVLVGVEEAACRQLNEGFIHRIVHKQPLGILKYAMTLDGKIATSSGHSAWITNPDA 190 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +++VH LRA DA++VG TV D+P LTC ++P+R+++ L D+++ Sbjct: 191 RSEVHQLRAACDAVIVGGNTVRQDNPFLTCH--QWDGNNPLRVVMSRSLNLPEDARLWNV 248 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A +++ P K + +I ++ L G S+L E G +A Sbjct: 249 AEAPTLVLTEVGSSPDFQKMLHGKGVEVIELPLLTPDHVMAHLYELGFCSVLWECGGTLA 308 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE- 353 S I V I+ + + +IG P+P+ + +R GSD +E Sbjct: 309 ASAIAQGAVQKILAFIAPKIIGGSHAPTPVGDLGFTTMTEALRLEKVCWRVVGSDCLVEG 368 Query: 354 YIGK 357 Y+ + Sbjct: 369 YLPE 372 >gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 369 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G A + + + +VD +ILY + ++G + L + F+ G D+ Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|148826406|ref|YP_001291159.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE] gi|229846003|ref|ZP_04466115.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1] gi|148716566|gb|ABQ98776.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittEE] gi|229811007|gb|EEP46724.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 7P49H1] gi|309973554|gb|ADO96755.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2846] Length = 372 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ + F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG] gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG] Length = 372 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ +P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium wasabiae WPP163] gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae WPP163] Length = 369 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 189/373 (50%), Gaps = 21/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MPQ---DAFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Sbjct: 58 RMAGERARGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQ 117 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + +M +E + +L R ++ LK+A S D MA S IT + Sbjct: 118 QSGITVSHGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA+S AIL TVLADDP LT R L P+R+I+D Sbjct: 178 RQDVQRFRAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQ 237 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ +++ + D ++ + + DL L+ +L R + Sbjct: 238 RVTPQHRVVSQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQIN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 S+ VE GA++A + +N+ +VD +I+Y + ++GE L++ F V Sbjct: 296 SVWVEAGASLAGALLNAGVVDELIVYLAPKLLGENARALCLLPGLDQLSQAPEFDIVEVR 355 Query: 345 YFGSDVCLEYIGK 357 G D+ L K Sbjct: 356 QIGPDLRLRLKPK 368 >gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 360 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ Sbjct: 2 EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +ME + + ++ K + +K A+S D I S IT S+ H + Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G SP+RII+D ++ DS +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRIPFDSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +VD ++ + S +IG +P+E Sbjct: 300 LKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus CCSD1] gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter ethanolicus CCSD1] Length = 360 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 117/329 (35%), Positives = 180/329 (54%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL + G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E+ Sbjct: 2 EEYMKRALTLAEKGWGHTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 62 KGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +ME + + ++ K + +K A+S D I S IT S+ H + Sbjct: 122 VGIMEKKARKLNEIFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G SP+RII+D ++ DS +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KSPVRIIVDSRGRIPFDSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSL 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 +VD ++ + S +IG +P+E Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|229174787|ref|ZP_04302310.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3] gi|228608695|gb|EEK65994.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus MM3] Length = 379 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VK+G ++G G G HAEV AL AGE+ Sbjct: 12 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKEGNIVGIGAHLRAGEEHAEVHALHMAGEK 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIKKGVKRVVIATLDCNPLVSGTGKRRLEEAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 ATGVLETEATLLNRFFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHTHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLAPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ +NI I + ++K LL L + + SL VEGG V SF+ Sbjct: 251 IIVGKDVNKEKIASYESENIAIFQMKTKHIEIKDLLFFLGEKQILSLFVEGGQTVHASFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 ++ ++ I+ Y S +IG P+ + G D+ + ++ Sbjct: 311 QTKHLNEIVTYISPKLIGGKDAPTLFGGNGFAALHDALSLEIQEMKQVGDDIKIVANARS 370 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 371 EVTECLQEL 379 >gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 360 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 120/329 (36%), Positives = 180/329 (54%), Gaps = 7/329 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IVK+G +IG G Y G PHAEV AL+ A E Sbjct: 2 EEYMKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVENV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T +VTLEPCSHYG++PPC + II+ GI+RV + ++DP+ +VSG G++ L + GI V Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 MME E + ++ K + LK A+S D I S IT S+ H + Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKI 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VG+ TV+ D+P LT RL G +P+RII+D ++ LDS +I+ +I Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTRLEGY--KNPVRIIVDSRGRIPLDSNVIRDKTAKTII 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 TE + +I +I + LK+L+ L RG+ S+L+EGG + S Sbjct: 240 ATTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSA 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEE 331 +VD ++ + S +IG +P+E Sbjct: 300 FKEGIVDKVMFFISPRIIGGKNALTPVEG 328 >gi|326941884|gb|AEA17780.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus thuringiensis serovar chinensis CT-43] Length = 370 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 188/369 (50%), Gaps = 12/369 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AG+ Sbjct: 3 DQEYMRIALLLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMAGQN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + I + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVKRVVIATLDCNPLVSGNGKRRLEEARIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TV+AD+P LT R+ P+R++LD H + S +I L Sbjct: 183 YRHIHDAILVGVNTVIADNPHLTTRIPNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ ++ KNI I + + +++ LL+ L + + SL VEGG ++ SF+ Sbjct: 242 IIVGKDVKKEKISSYESKNIAIFQMETKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K G D+ + +N Sbjct: 302 KTNNFNEIVTYISPKLIGGKDAPTLFGGNGFSKLQDALTLKIQEMKQIGDDIKIVANARN 361 Query: 359 ---LCLQEL 364 CLQEL Sbjct: 362 EVTKCLQEL 370 >gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium atrosepticum SCRI1043] gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum SCRI1043] Length = 369 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 188/373 (50%), Gaps = 21/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MPQ---DELYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHAL 57 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Sbjct: 58 RMAGERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQ 117 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + +M +E + +L R ++ LK+A S D MA S IT + Sbjct: 118 QAGITVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQA 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA+S AIL TVLADDP LT R + L P+R+I+D Sbjct: 178 RQDVQRFRAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQ 237 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ +II + D + + + DL L+ +L R + Sbjct: 238 RVTPQHRIISQPGE--TWLARVQADEQAWPQNVEHLMLPQHNGGVDLVALMMVLGRRQIN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRD 344 S+ VE GA++A + +N+ +VD +I+Y + ++GE L G + F V Sbjct: 296 SVWVEAGASLAGALLNACVVDELIVYLAPKLLGENARSLCLLPGLTQLSQAPEFDIVEVR 355 Query: 345 YFGSDVCLEYIGK 357 G D+ L K Sbjct: 356 QVGPDLRLRLKPK 368 >gi|282900583|ref|ZP_06308525.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis raciborskii CS-505] gi|281194383|gb|EFA69338.1| Riboflavin biosynthesis protein RibD [Cylindrospermopsis raciborskii CS-505] Length = 385 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 177/356 (49%), Gaps = 8/356 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FDA M L +R +G TS NP V ++VKDG ++G G G PHAEV AL A Sbjct: 14 SEFDALMMQRCLELARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHAEVFALRAA 73 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L G Sbjct: 74 GERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAG 133 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + E + ++ R + ++ LK A++ D I S IT ++++ Sbjct: 134 IEVIIGVEEEACQKLNEGFVYRVLHQKPLGILKYAMTLDGKIASNSGHSTWITNSQARSE 193 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA DA++VG TV D+P LT ++P+R+++ L ++ + T + Sbjct: 194 VHQLRAACDAVIVGGNTVRRDNPHLTTHQQ--TGYNPLRVVMSASLNLPENAHLWDTRVA 251 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ E P +K + ++ ++ L RG ++L E G +A Sbjct: 252 PTLVLTQEGSSPDFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARA 311 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 I V ++ + + +IG P+P+ + L V G D +E Sbjct: 312 IAENAVQKVLAFIAPKIIGGIDAPTPVGDLGLSSMTESLVLERVNWRTIGCDFLVE 367 >gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047] gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC 11116] gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047] gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC 11116] Length = 372 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ +P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|163941852|ref|YP_001646736.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis KBAB4] gi|163864049|gb|ABY45108.1| riboflavin biosynthesis protein RibD [Bacillus weihenstephanensis KBAB4] Length = 370 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 3 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 63 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + KR +T+K A+S D S ITG ++ VH Sbjct: 123 TTGVLEAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATITGESKWITGEEARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 183 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 242 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 302 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 361 Query: 359 ---LCLQE 363 CLQE Sbjct: 362 EVTECLQE 369 >gi|301054889|ref|YP_003793100.1| riboflavin biosynthesis protein ribD [Bacillus anthracis CI] gi|300377058|gb|ADK05962.1| riboflavin biosynthesis protein ribD [Bacillus cereus biovar anthracis str. CI] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 188/355 (52%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR IT+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +G+ SLL+EGG V SFI Sbjct: 243 FTTNNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGICSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 303 ENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 353 >gi|229047052|ref|ZP_04192675.1| Riboflavin biosynthesis protein [Bacillus cereus AH676] gi|228724291|gb|EEL75625.1| Riboflavin biosynthesis protein [Bacillus cereus AH676] Length = 358 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 124/352 (35%), Positives = 190/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGA Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N +A + + +L ++L +L +GV+SLL+EGG V SFI ++ Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + DV +GK+ Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 346 >gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII] gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII] gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866] Length = 372 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 20/375 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAANLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TVL DDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ ++P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNKLE 357 Query: 345 YFGSDVCLEYIGKNL 359 G D+ L Y K + Sbjct: 358 QIGDDIKLTYTPKGI 372 >gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 369 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G A + + + +VD +ILY + ++G + L + F+ G D+ Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLQPK 368 >gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia bercovieri ATCC 43970] gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia bercovieri ATCC 43970] Length = 369 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L P+RIILD H +++ Sbjct: 184 FRAESAAILSTSATVLADDPSLTVRWDELDSETQGWYPQARLRQPIRIILDSHNRVTPHH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D L A ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVEADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F+ G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELTGLTSLSQAPEFVFSDVRPVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|15672975|ref|NP_267149.1| riboflavin-specific deaminase [Lactococcus lactis subsp. lactis Il1403] gi|12723937|gb|AAK05091.1|AE006333_8 riboflavin-specific deaminase [Lactococcus lactis subsp. lactis Il1403] Length = 362 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 12/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLANKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI + Sbjct: 64 PEGATLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + + ++ +K ++ D I + S ITG I++ +VH Sbjct: 124 SLNVLEKECEELNKIFFYYVSQGLPYVMMKYVMTLDGKIATSAGQSKWITGEIARQKVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R++ AI++G+ T++ DDP+L+ RL +P+RII D H + L SKI+ TA P Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTATEIPT 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T DP F K II C +LK+L L +G+ S+++EGG + S Sbjct: 242 IIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + + +V + Y + + G PSP+E +E+ + Y G D+ LE Sbjct: 302 ALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358 >gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM 30120] gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM 30120] Length = 371 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 192/371 (51%), Gaps = 19/371 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M+ A ++ TS NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MLEQDRIYMARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPCSH+GR+PPCA+ +I GI RVV + DP+ +V+GRGL L+Q Sbjct: 61 AGDKAKGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQA 120 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ E + +L R +I LK+A S D +A S IT ++ Sbjct: 121 GIETASNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARK 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V +LRAQ+ AIL TVLADDP LT R N L E P+RI+LD H ++ Sbjct: 181 DVQVLRAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRI 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289 + D K+ T L +V D + + + I D DL L+ L R V S Sbjct: 241 TPDHKV--TQLEGECWLVRPTPDTAVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNS 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDY 345 + VE GA +A S + LVD +I+Y + ++G+ + P L F + Sbjct: 299 IWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGDAARGLVSLPELSALSDAPKFEFTDVEK 358 Query: 346 FGSDVCLEYIG 356 GSD+ + Sbjct: 359 VGSDLRVRLRP 369 >gi|159029666|emb|CAO87744.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 386 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 188/362 (51%), Gaps = 9/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD + M L +R +G TS NP V +IV++GI+IG G G PHAEV AL +A Sbjct: 26 TEFDRKMMQRCLTLARQALGRTSPNPLVGSVIVQEGIIIGEGFHPGAGQPHAEVLALRQA 85 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ARGAT YV LEPC+HYGR+PPC++ I+ GI++VVV + DP+ V+G+G+Q L+ G Sbjct: 86 AEKARGATLYVNLEPCNHYGRTPPCSEAIVRAGIKKVVVGMIDPNPLVAGKGIQRLASAG 145 Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ESE + ++ R K+ LK A++ D I S IT S+ Sbjct: 146 IETLVGVEESECRQVNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 205 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+ DAI+VG TV D+P LT GL H+P+R+++ L + + T+ Sbjct: 206 VHQLRSACDAIIVGGSTVRQDNPHLTTH--GLCNHNPLRVVMTRSLDLPPSAHLWDTSQF 263 Query: 243 APVIIVTENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P ++ T+ D V K + +I ++ L RG +L E G ++ + Sbjct: 264 -PTLVYTQIDSNVKLKQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAA 322 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 I +V II + + +IG P+ + + F + + +V + Y+ ++ + Sbjct: 323 AIAEGMVQKIIAFIAPKIIGGINAPTAVGDLG----FQLMSQALQLENVTVNYLNPDILI 378 Query: 362 QE 363 + Sbjct: 379 EG 380 >gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Haemophilus influenzae 10810] Length = 372 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPC+HYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ +P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEKIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127] gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127] Length = 372 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 20/375 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TVLADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ ++P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGKNL 359 G D+ L Y K + Sbjct: 358 QIGDDIKLTYTPKGI 372 >gi|228959585|ref|ZP_04121266.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800077|gb|EEM47013.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pakistani str. T13001] Length = 358 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 125/352 (35%), Positives = 190/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTGARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N +A + + +L ++L +L +GV+SLLVEGG V SFI ++ Sbjct: 239 SNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + DV +GK+ Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 346 >gi|228973365|ref|ZP_04133953.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786345|gb|EEM34336.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar thuringiensis str. T01001] Length = 358 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 123/352 (34%), Positives = 189/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGA Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSHYGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHYGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N A + + +L ++L +L +GV+SLL+EGG V SFI ++ Sbjct: 239 SNHAAKKKKALENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L++ +ILY + +IG PS + + K + D+ +GK+ Sbjct: 299 LMNKLILYVAPKIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 346 >gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 378 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 186/369 (50%), Gaps = 18/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG Sbjct: 11 PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RA+S AIL TVLADDP LT R + L P+R+++D +++ Sbjct: 191 QRFRAESAAILSTSATVLADDPSLTVRWSELGADVQKRYSESDLRQPVRVVVDSQQRVTP 250 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 +I+ + D ++ + + DL L+ +L R + S+ V Sbjct: 251 QHRIVNQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWV 308 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E GA++A + +N+ +VD +I+Y + ++GE L++ F G Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQIGP 368 Query: 349 DVCLEYIGK 357 D+ L K Sbjct: 369 DLRLRLKPK 377 >gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5] gi|6225948|sp|O66534|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5] Length = 356 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 126/351 (35%), Positives = 196/351 (55%), Gaps = 6/351 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M AL ++ G T NP+V ++VK+G ++G G G PHAEV AL +AG Sbjct: 4 EIDKNYMKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A+GAT YVTLEPC+H+GR+PPC II GI+RVVV DP+ +SG+G++ L GI Sbjct: 64 EKAKGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 VD + E E + + T ++R +ITLK A + D + S IT S+ Sbjct: 124 EVDVGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVA 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H+LR ++ A+LVG+ TV+ DDP LT R E P+RIILDP ++ L +K++ T A Sbjct: 184 HILRREATAVLVGVNTVIKDDPHLTVRFV-PTEKQPVRIILDPELEVPLSAKVLNTE-EA 241 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I++T+ ++ A ++K + ++ +LK +L L + L+VEGG SF+ Sbjct: 242 PTIVITKKEN-EKAEKLKEKGVQVLILKGFNLKNILKKLKELEIMHLMVEGGPRTLTSFL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC--VRRDYFGSDVCL 352 D I+++ + ++GEG L +E++ + + G D+ + Sbjct: 301 KEGFFDRIVVFIAPKIMGEGLSIGDLGIRSIEESLKVRKKKVENLGEDLVI 351 >gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC 33393] gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC 33393] Length = 374 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 137/373 (36%), Positives = 194/373 (52%), Gaps = 19/373 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S DA FM AL ++ T+ NPSV C++VKDG V+G+G A G PHAEV AL Sbjct: 4 PFSPQDAAFMQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE+ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ LS Sbjct: 64 EAGEKARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSD 123 Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + E +L R + + LK+A+S D MA S ITG ++ Sbjct: 124 AGIQSAVGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFK 229 V RA++ AIL TVLADDP L R L + P+R+ILD K Sbjct: 184 ADVQQYRAKASAILSTSQTVLADDPSLNVRWEELPLDVKASYAQEKLRQPVRVILDSSHK 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288 + D K+ T +PV +V E D + + + L+ L+ L R + Sbjct: 244 VRSDFKVFSTE--SPVWLVGEEDYSLTDFPPFTDYLKLDRNQGETRLQSLMAELGKRQIN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A + I LVD +I+Y + ++G+ L + + + Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTQLADAPLWQLQSCE 361 Query: 345 YFGSDVCLEYIGK 357 G D+ L YI K Sbjct: 362 PVGDDLKLIYIRK 374 >gi|52142146|ref|YP_084683.1| riboflavin biosynthesis protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus E33L] gi|51975615|gb|AAU17165.1| riboflavin biosynthesis protein; diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus E33L] Length = 367 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 CGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR IT+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFITIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + I +L ++L +L G+GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAAEKKKALENAGVKIFVTSGEKHINLYEMLDVLGGKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 303 ENKLIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFK----DISFTQVGKD 353 >gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia enterocolitica subsp. palearctica Y11] Length = 369 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 185/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G++RVV + DP+ +V+GRGL L Q G+ + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L P+RII+D H +++ Sbjct: 184 FRAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVETDEQSWPNNVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G A + + + +VD +ILY + ++G + L + F+ G D+ Sbjct: 302 GPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTQLSDAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLQPK 368 >gi|240949069|ref|ZP_04753420.1| riboflavin biosynthesis protein [Actinobacillus minor NM305] gi|240296542|gb|EER47167.1| riboflavin biosynthesis protein [Actinobacillus minor NM305] Length = 355 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 182/354 (51%), Gaps = 12/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ A+ + G T+ NP V C+IVK+ ++ G G HAE A+ + + RGA Sbjct: 1 MARAIALAEKARGWTNPNPLVGCVIVKNDEILAEGYHERIGGWHAERNAILNSNADLRGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC H+GR+PPC+ +IE GI +V + DP+ VSG+G++ L GI +V Sbjct: 61 TAYVTLEPCCHHGRTPPCSDLLIERGISKVFIGSRDPNPLVSGKGVKQLQAAGIEVVTDF 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M E + KR ++ LK A++ D I + S ITG +++ +V R Q Sbjct: 121 MREECDRLNPIFFHYIQTKRPYVLLKYAMTADGKIATSSGESKWITGELARAKVQETRHQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VGI TVLAD+P L R+ P+RI+ D + LD ++++TA II T Sbjct: 181 YSAIMVGIETVLADNPMLNSRMP--NAKQPVRIVCDSSLRTPLDCQLVQTAKEYRTIIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +DD F+ + I+ C + DL+ LL L + SLL+EGG+++ S + Sbjct: 239 VSDDLQKIAQFQPLGVEILVCKVKDKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSALQV 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEY 354 +V+ + Y + ++G +P+ + V+ G D+ ++Y Sbjct: 299 GIVNRVHCYIAPKLVGGATAKTPIGGEGIGVLSQAVKLTNAQISQIGEDILIDY 352 >gi|229168856|ref|ZP_04296574.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621] gi|228614586|gb|EEK71693.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH621] Length = 379 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 189/368 (51%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKDG ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDGKIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ AT YVTLEPCSH+G++PPC + +IE G++RVV+ D + VSG G + L + GI + Sbjct: 72 AKDATVYVTLEPCSHFGKTPPCCELLIEKGVQRVVIATLDCNPLVSGNGKRRLEEVGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++++E + + KR +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLDAEATLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370 Query: 359 ---LCLQE 363 CLQE Sbjct: 371 EVTECLQE 378 >gi|206969393|ref|ZP_03230348.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] gi|206736434|gb|EDZ53592.1| riboflavin biosynthesis protein RibD [Bacillus cereus AH1134] Length = 367 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 189/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG T YVTLEPCSH+GR+ PCA I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGGTIYVTLEPCSHHGRTGPCAGAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L+D IILY + +IG PS +E + K + D+ IGK+ Sbjct: 303 ENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 353 >gi|256004715|ref|ZP_05429691.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 2360] gi|281416820|ref|ZP_06247840.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum JW20] gi|255991308|gb|EEU01414.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 2360] gi|281408222|gb|EFB38480.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum JW20] gi|316941134|gb|ADU75168.1| riboflavin biosynthesis protein RibD [Clostridium thermocellum DSM 1313] Length = 368 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 129/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+ Sbjct: 8 EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 67 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+ Sbjct: 68 AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 127 Query: 128 RMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E ++T V+K+ + LK A++ D I A S +TG ++N VH++ Sbjct: 128 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 187 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI Sbjct: 188 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 247 Query: 247 IVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T + D K + II D DLK L+ L + S+L+EGG + S Sbjct: 248 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 307 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I++ +VD ++ + S ++G P+ +E + + FG D+ LE Sbjct: 308 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLE 364 >gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus thermodenitrificans NG80-2] gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus thermodenitrificans NG80-2] Length = 359 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 127/350 (36%), Positives = 193/350 (55%), Gaps = 9/350 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ VG TS NP+V ++V DG ++G G G PHAEV A+ AGE+ARGA Sbjct: 1 MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMAGEKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSHYG++PPCA +IE G+RRVVV DP+ V+G+G+ L + GI + + Sbjct: 61 TVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVEVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + K +T+K A S D I A S IT ++ VH LRAQ Sbjct: 121 LKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAILVG+ TV+AD+P+LT R+ G Q +P+R+ILD + LD+ ++ II Sbjct: 181 HDAILVGVNTVMADNPKLTVRI-GQQRKNPLRVILDTNLHTPLDAHVVVDKEAETWIITG 239 Query: 250 ENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 A + + + I+ D++++L +L + +TSL VEGG+ + SF+ S + Sbjct: 240 SGVSREKAKMYERLGVRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFLRSGM 299 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCL 352 V+ ++ Y + +IG P+P+ + + + G D+ + Sbjct: 300 VNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKI 349 >gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 378 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 186/369 (50%), Gaps = 18/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG Sbjct: 11 PQDELYMARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMAG 70 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 131 AVSHGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RA+S AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADIQKRYSEADLRQPVRVIVDSQQRVTP 250 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 +I+ + D ++ + + DL L+ +L R + S+ V Sbjct: 251 QHRIVSQPGE--TWLARVQADEQAWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWV 308 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 E GA++A + +N+ +VD +I+Y + ++GE L G + F G Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQVGP 368 Query: 349 DVCLEYIGK 357 D+ L K Sbjct: 369 DLRLRLKPK 377 >gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1] gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1] Length = 368 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 181/368 (49%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 2 QDEVYMARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+ Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I+ D+ +NI + + DL L+ L R + S+ V Sbjct: 242 HRIVHQPGETW---FARTDEDSRQWPDGVSTLNIPAHNGQLDLVLLMMQLGRRQINSVWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + +VD +I+Y + ++G + LE+ F G Sbjct: 299 EAGPRLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPQFRFNEIRQVGP 358 Query: 349 DVCLEYIG 356 D+CL Sbjct: 359 DLCLHLTP 366 >gi|310644100|ref|YP_003948858.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Paenibacillus polymyxa SC2] gi|309249050|gb|ADO58617.1| Riboflavin biosynthesis protein (Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Paenibacillus polymyxa SC2] Length = 366 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 187/362 (51%), Gaps = 12/362 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AGE A Sbjct: 5 EKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI ++ Sbjct: 65 QGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E + V KR IT+K AV+ D I S IT ++ VH L Sbjct: 125 VGVCEQESIRMNEVFNQYIVNKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + ILVG+ TV+ D+P+LT RL + +P+RIILD ++ LD+++I I Sbjct: 185 RHEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 D + + + Y + +L ++L IL V+S+ VEGGA V S Sbjct: 243 FTGRTYDKGKRSQLEQLGVKVYPTQDEYSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ L D ++LY + ++G P L + V D+ + +G + + Sbjct: 303 FVQQGLADKLVLYIAPKLVGGRSAPGFLGGEGVSAMSDAVALQ----DLSVTQVGVDWKI 358 Query: 362 QE 363 + Sbjct: 359 EG 360 >gi|23097878|ref|NP_691344.1| riboflavin specific deaminase [Oceanobacillus iheyensis HTE831] gi|22776102|dbj|BAC12379.1| riboflavin specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase : 5-amino-6-(5-phosphoribosylamino) uracil reductase) [Oceanobacillus iheyensis HTE831] Length = 367 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 188/361 (52%), Gaps = 13/361 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M A+ ++ G T NP V +IV ++G G G PHAE+ AL+ AG Sbjct: 2 TDDKHYMKLAIENAKAMKGQTDPNPLVGAVIVNHNRIVGVGSHLKAGEPHAEIHALQMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH GR+ PCA ++E G+RRVV+ DP+ V+G G++ L GI Sbjct: 62 ENAKGATIYVTLEPCSHQGRTGPCALALVEAGVRRVVIATLDPNPLVAGNGVKILEDAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + K+ IT+K A + D + S IT ++ V Sbjct: 122 EVEVGVLEDESISMNEVFNKFITHKQPFITMKAASTLDGKVATKTNHSKWITSEAAREDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR + AILVGI T++ DDP LT R+ +P+RI+LD ++ LD++II+ Sbjct: 182 HHLRNEHAAILVGIQTIIHDDPALTTRIP--NGRNPIRIVLDSSLRIPLDAQIIQDKRAP 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I E D + II + D++ ++ L + ++SLL+EGG + Sbjct: 240 TMIFTKEEVDQKKKDKLESVGVEIINTSGKEQTDIQDVVNHLGNQQISSLLLEGGGNIHA 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 SF+ + LVD ++LY + + G P+ E +E+ + + ++ D G D +I Sbjct: 300 SFLAAGLVDKVVLYMAPKLSGGKNAPTFFEGAGIEQMDDSIDLLNLKIDQIGPD--FRFI 357 Query: 356 G 356 G Sbjct: 358 G 358 >gi|125972628|ref|YP_001036538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium thermocellum ATCC 27405] gi|125712853|gb|ABN51345.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium thermocellum ATCC 27405] Length = 365 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 129/357 (36%), Positives = 193/357 (54%), Gaps = 11/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FMS A++ ++ G T+ NP V ++VKDG +I G G PHAEV+A A E+ Sbjct: 5 EFFMSRAIKLAKLGWGKTNPNPLVGAVVVKDGKIIAEGYHKQLGGPHAEVEAFNNAKEDV 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G T YV LEPCSHYGR+PPCAQ II+ GI++VV + DP+ +VSGRG + L GI V+ Sbjct: 65 AGGTLYVNLEPCSHYGRTPPCAQKIIDVGIKKVVAAIKDPNPKVSGRGFEMLKNAGIEVE 124 Query: 128 RMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E ++T V+K+ + LK A++ D I A S +TG ++N VH++ Sbjct: 125 VGVLEEEAIRLNEIFITYIVKKKPFVILKTAMTLDGKIATASGDSKWVTGEKARNHVHVI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + A++VGI TVL D+P LT RL + P+RI++D + LDS +I + A VI Sbjct: 185 RDRVAAVMVGINTVLKDNPYLTTRLPDKEGSDPVRIVVDSKGSIPLDSNVINSNSKAGVI 244 Query: 247 IVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T + D K + II D DLK L+ L + S+L+EGG + S Sbjct: 245 LATTSRIDKEKEKMLIDKGVKIIKADGSDGRVDLKLLMDELYKLEIDSVLLEGGGTLNSS 304 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I++ +VD ++ + S ++G P+ +E + + FG D+ LE Sbjct: 305 AISAGIVDKVMCFISPKIVGGENAPTSVEGIGALRMCEAIGVKNISVVKFGEDILLE 361 >gi|326406537|gb|ADZ63608.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Lactococcus lactis subsp. lactis CV56] Length = 362 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 190/357 (53%), Gaps = 12/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G + NP V LIVK+G +IG+G G HAE+ A ++ E Sbjct: 4 DEYYMDLAIVLAKKGGGNVNPNPQVGALIVKEGRIIGQGYHEKYGKAHAEINAFKDCNES 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA YVTLEPC+H G+ PPC + II+ GI+RVV+ DP+ VSG+G++ + + GI + Sbjct: 64 PEGAMLYVTLEPCAHQGKQPPCFEAIIKNGIKRVVIGHLDPNPLVSGKGIKAMREAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + + ++ +K A++ D I + S ITG I++ +VH Sbjct: 124 SLNVLEKECEELNKIFFYYVSQGLPYVMMKYAMTLDGKIATSAGQSKWITGEIARQKVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R++ AI++G+ T++ DDP+L+ RL +P+RII D H + L SKI+ TA P Sbjct: 184 DRSRFMAIMIGVETLILDDPQLSVRLE--NGKNPIRIICDTHLRSPLASKIVSTATEIPT 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T DP F K II C +LK+L L +G+ S+++EGG + S Sbjct: 242 IIATAESDPEKQAPFLKAGCEIILVSCLEGRLNLKELTKKLGEKGIDSIILEGGGTLNAS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + + +V + Y + + G PSP+E +E+ + Y G D+ LE Sbjct: 302 ALKAGIVQKVQTYIALKIFGGKEAPSPVEGHGIEQPNQAYLLEGAQITYLGEDILLE 358 >gi|145632331|ref|ZP_01788066.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655] gi|144987238|gb|EDJ93768.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 3655] Length = 372 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 194/373 (52%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSLH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ + F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|228986473|ref|ZP_04146609.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773294|gb|EEM21724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 358 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/352 (34%), Positives = 190/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI+RVVV DP+ VSGRG+Q L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKRVVVATLDPNPLVSGRGIQILQDAGIDVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG+ TV D+P LT R+ +P+R+ILD ++ +++ ++ I T Sbjct: 181 NAAILVGVNTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N A + + +L ++L +L +G++SLL+EGG V SFI ++ Sbjct: 239 NNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGISSLLIEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 299 LMDKLILYVAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 346 >gi|322420507|ref|YP_004199730.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18] gi|320126894|gb|ADW14454.1| riboflavin biosynthesis protein RibD [Geobacter sp. M18] Length = 374 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 200/363 (55%), Gaps = 11/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ + M AL +R VG T+ NP+V C+IV+DG V+G+G G PHAEV AL Sbjct: 1 MSADHLKMMRLALSEARKGVGKTAPNPAVGCVIVRDGEVVGKGWHKKAGTPHAEVHALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG++ L Sbjct: 61 AGELAAGADAYVTLEPCSHFGKTPPCARALIEARVGRVFVAMVDPNPLVSGRGIKMLQDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E ++ + KR ++ LK A++ D A S +T S+ Sbjct: 121 GIEVEVGLLEAESLEINRPFVKWILTKRPYVVLKSALTLDGKSATATGDSKWVTCDRSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR + DAI+VG+GTV+ DDP LTCR+ G P+R+I+D ++ + + Sbjct: 181 EVHRLRGRLDAIMVGVGTVIKDDPLLTCRVPG--GKDPLRVIVDSTLRIPRHAALFSLRS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 A +I T D A + ++ C+ + D LLT L RGV S+L+EGG+ Sbjct: 239 EAKTVIATCCADLARIDAVAAHGVEVLVCNEKDGRVDPDDLLTKLGERGVQSILLEGGSH 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A +F+ + L+D +L+ + ++G G + + ++ G D+ +E Sbjct: 299 LAGAFLRAGLIDRCMLFLAPKLVGGAGMGLFAGAGVNLMADAIRLEEMKVKRIGVDLLVE 358 Query: 354 YIG 356 + Sbjct: 359 GVP 361 >gi|166366741|ref|YP_001659014.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843] gi|166089114|dbj|BAG03822.1| riboflavin biosynthesis protein [Microcystis aeruginosa NIES-843] Length = 365 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 180/356 (50%), Gaps = 8/356 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD M L +R +G TS NP V +IV++G +IG G G PHAEV AL +A Sbjct: 5 TEFDRTMMQRCLTLARQALGRTSPNPLVGAVIVQEGTIIGEGFHPGAGQPHAEVFALRQA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ARGAT YV LEPC+HYGR+PPC++ I++ GI++VVV + DP+ V+G+G+Q L G Sbjct: 65 AEKARGATLYVNLEPCNHYGRTPPCSEAIVQAGIKKVVVGMIDPNPLVAGKGIQRLESAG 124 Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ESE ++ R K+ LK A++ D I S IT S+ Sbjct: 125 IETLVGVEESECLQLNQGFIHRITAKKPFGILKYAMTLDGKIAATSGHSTWITSPASRQI 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+ DAI+VG TV D+P LT GL +H+P+R+++ L + + T+ Sbjct: 185 VHQLRSACDAIIVGGSTVRQDNPHLTTH--GLSDHNPLRVVMTRSLDLPSSAHLWDTSQF 242 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ + + L K + +I ++ L RG +L E G ++ + Sbjct: 243 PTLLYTQIDSNVKLQQQLLTKGVEVIELTEVTPTLVMENLYQRGFCQVLWECGGGLSAAA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 I +V II + + +IG P+ + + + V +Y D+ +E Sbjct: 303 IAEGMVQKIIAFIAPKIIGGIQAPTAVGDLGFQLMSQALQLKNVTVNYLNPDILIE 358 >gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582] gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582] Length = 370 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 130/367 (35%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 4 DELYMARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMAGKR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP LT R + L P+RIILD H +++ Sbjct: 184 LRAESAAILSTSATVLADDPSLTVRWDELDAETQRSYPRENLRQPLRIILDGHNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ + D L ++ + DL ++ L R V S+ VE Sbjct: 244 KLIQQP--GTTWLARLQPDQGLWPQNVEQLQFPAHGGGIDLVVMMMQLAKRQVNSIWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA ++ + + + LVD +ILY + ++G+ G LE+ F+ G D+ Sbjct: 302 GARLSGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEQLIDAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKAK 368 >gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] Length = 372 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 192/371 (51%), Gaps = 20/371 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL + Sbjct: 4 FSSQDHVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIALAQ 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 64 AGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDA 123 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + +L R + + LK+A+S D M S ITG +++ Sbjct: 124 GIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSDARS 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V +RA+S A+L T++ADDP L R + E P+R+ILD ++ Sbjct: 184 DVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRI 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 K+ T +PV +V+ +P F II LK+++ L R + +L Sbjct: 244 QPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKEVMRELGKRQINTL 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346 VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 300 WVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQI 359 Query: 347 GSDVCLEYIGK 357 G D+ L Y K Sbjct: 360 GDDIKLTYTPK 370 >gi|268611447|ref|ZP_06145174.1| riboflavin biosynthesis protein [Ruminococcus flavefaciens FD-1] Length = 373 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 173/366 (47%), Gaps = 22/366 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE---EAG 64 +M AL ++ +G TS NP V +IV+DG +IG G G HAE A E G Sbjct: 4 EDYMRRALELAQRGMGFTSPNPMVGAVIVRDGKIIGEGWHKKYGELHAERTAFAYCDENG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GA YVTLEPC H+G+ PPC +IE GI+RV + DP+ VSG+G++ L + GI Sbjct: 64 IDCTGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFIGSADPNPMVSGKGVKILREHGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ E + +T+K A++ D I S ITG ++ V Sbjct: 124 EVTEDVLREECDAINGIFFHWITHNWPFVTVKYAMTLDGKIATHTGESKWITGEEARLDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R + AI+VGIGTVLADDP LTCRL P+RII D ++ LDS I+KTA Sbjct: 184 QRERLRHSAIMVGIGTVLADDPMLTCRLE--NGRDPIRIICDSRLRIPLDSNIVKTAKDV 241 Query: 244 PVII----VTENDDP---VLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLV 292 P II + DD + II C DL L+ L + S+LV Sbjct: 242 PTIIAMTNFNKKDDREKCEKRHILEEMGCRIISTKANCGHVDLYTLMLKLREMKIDSILV 301 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFG 347 EGG + S +LV + Y + + G SP+E + + G Sbjct: 302 EGGGELNDSLFRHKLVQRVKAYIAPKIFGGKDAKSPVEGWGIPTPNDAYMIENTQIRRIG 361 Query: 348 SDVCLE 353 D+ +E Sbjct: 362 EDILIE 367 >gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli UM146] Length = 361 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 185/362 (51%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEVQAL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|218781151|ref|YP_002432469.1| riboflavin biosynthesis protein RibD [Desulfatibacillum alkenivorans AK-01] gi|218762535|gb|ACL05001.1| riboflavin biosynthesis protein RibD [Desulfatibacillum alkenivorans AK-01] Length = 372 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 188/368 (51%), Gaps = 12/368 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D ++M AL + G TS NP V +IVKDG VIG+G G PHAE+ ALEE Sbjct: 1 MKKQDTQYMRQALALAEKGTGNTSPNPMVGAVIVKDGKVIGQGWHKKAGGPHAEIFALEE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+GAT YVTLEPC+H+G++PPC+ +++ GI +V+ + DP+ + + GL++L + Sbjct: 61 AGADAKGATMYVTLEPCNHHGKTPPCSHAVLKAGIAKVIAAIKDPNPK-AQGGLKYLQEN 119 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + E+E + ++ R + K A + D I S ITG S+ Sbjct: 120 GVETQWGVCEAEARKQNEFFIKHVTTGRPFVVCKCAATLDGRIATRIGDSKWITGEESRA 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R DAILVGI TV DDP LT RL Q + P+R+ILD + +K+++ Sbjct: 180 YVHKMRHAMDAILVGINTVRMDDPSLTARLEDGQGNDPLRVILDSRLSMDPSAKMLRQDS 239 Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 + +I P V A K I+ +L + L RG+ SLL+EGG Sbjct: 240 DSGTLIFCGPQAPEVKRDALEKAGAEIVEAPEMSGFLNLDFICRNLGERGLNSLLIEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVC 351 V S + S +VD + L+ + ++ G+ G+P G + FG+D Sbjct: 300 HVHSSALKSGVVDKVCLFYAPKILCGDDGVPMFAGPGPDFMADSIELKDITLHRFGNDFM 359 Query: 352 LEYIGKNL 359 +E +L Sbjct: 360 VEGYVMDL 367 >gi|67078030|ref|YP_245650.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus cereus E33L] gi|66970336|gb|AAY60312.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Bacillus cereus E33L] Length = 367 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 190/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E + K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDVEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAAEKRKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L+D +ILY + +IG PS +E + K + D+ IGK+ Sbjct: 303 ENKLMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQIGKD 353 >gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827] gi|188019376|gb|EDU57416.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827] Length = 371 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 21/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M+ AL ++ TS NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MIEQDRIYMARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+GR+PPCA+ +I G+RRVV + DP+ +V+GRGL LSQ Sbjct: 61 AGEKAKGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQA 120 Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ E + +L R ++ LK+A S D + S IT ++ Sbjct: 121 GIETASGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V +LRAQ+ AIL TVLAD+P LT R N L P+RI+LD H ++ Sbjct: 181 DVQVLRAQASAILSTSSTVLADNPSLTVRWNELPAEIHAVYPQSTLRQPIRIVLDNHNRV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289 + + K+ T L +V +P + + + I D DL L+ L R V S Sbjct: 241 TAEYKV--TQLAGECWLVRSQPEPDAVWQGQVEQLAIPSDDNGIDLVILMMQLAKRNVNS 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE G +A S + LVD +I+Y + ++G+ IP+ L + F Sbjct: 299 IWVEAGPILAGSLLKLGLVDELIVYIAPKLLGDTARGLVNIPA-LAHLSDAQKFEFTDVQ 357 Query: 345 YFGSDVCLEYIG 356 G D+ + Sbjct: 358 KVGDDLRVRLRP 369 >gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 378 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 184/369 (49%), Gaps = 18/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG Sbjct: 11 PQDELYMARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMAG 70 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 71 ERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGI 130 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 131 AVSHGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDV 190 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RA+S AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 191 QRFRAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTP 250 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 +I+ + D ++ + DL L+ +L R + S+ V Sbjct: 251 QHRIVSQPGE--TWLARVQADEQAWPQGVEQVTLPQHNGGVDLVALMMVLGRRQINSVWV 308 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 E GA++A + +N+ +VD +I+Y + ++GE L G + F G Sbjct: 309 EAGASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIAEVRQIGP 368 Query: 349 DVCLEYIGK 357 D+ L K Sbjct: 369 DLRLRLKPK 377 >gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis IP 31758] gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis IP 31758] Length = 369 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + + D ++ + Y + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli 536] gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli NC101] gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536] gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli NC101] gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972] Length = 361 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 184/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|205374673|ref|ZP_03227467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Bacillus coahuilensis m4-4] Length = 377 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 9/365 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + +M+ A++ ++ G TS NP V +IV+DG ++G G G PHAE+ AL Sbjct: 1 MNNNQSHEFYMNMAIQNAKVMSGQTSPNPLVGAVIVRDGEIVGFGAHMKAGEPHAEIHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GAT YVTLEPCSHYGR+ PCA +IE GI VVV DP+ V+G G++ L Sbjct: 61 RMAGDKAKGATIYVTLEPCSHYGRTGPCAVALIEAGITNVVVATLDPNPIVAGNGVRILE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ +ME+E K + V R ITLK A S D I S IT + Sbjct: 121 DAGIKVITGVMEAEAKRMNEVFNHFIVTGRPFITLKTASSLDGKIATHTHNSKWITCEGA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +R DAILVG T+L D+P LT RL +P+RII+D K+ L+SK++ Sbjct: 181 REDVHKMRNVYDAILVGANTILEDNPSLTTRLENTHGKNPIRIIIDSALKIPLNSKVLTD 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296 I ++ + + + ++I +L ++ L V+SL++EGG Sbjct: 241 KEAPTWIFTSKMVEETRVQSVERLGASVIKTSGTHQVNLHDVVNYLGKMNVSSLIIEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + SF+ +LV ++Y + +IG P+ LE + + + G D Sbjct: 301 TINSSFVEEKLVQKAVIYFAPKLIGGKEAPTFLEGKGVAIVSQAIDLENMTITSLGKDFK 360 Query: 352 LEYIG 356 +E Sbjct: 361 IEGYP 365 >gi|218232159|ref|YP_002368101.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] gi|218160116|gb|ACK60108.1| riboflavin biosynthesis protein RibD [Bacillus cereus B4264] Length = 367 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 189/355 (53%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G HAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGESHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N A + + +L ++L +L +GV+SLL+EGG V SFI Sbjct: 243 FTTSNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 ++L+D IILY + +IG PS +E + K + D+ IGK+ Sbjct: 303 ENKLMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 353 >gi|222055764|ref|YP_002538126.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32] gi|221565053|gb|ACM21025.1| riboflavin biosynthesis protein RibD [Geobacter sp. FRC-32] Length = 368 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 189/370 (51%), Gaps = 11/370 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ F M A+ +R VG T+ NP+V C+IVKDG ++G G G PHAE+ AL + Sbjct: 1 MTDFAENMMKRAVSLARKGVGKTAPNPAVGCVIVKDGAIVGEGWHRKAGTPHAEIHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GA +VTLEPCSH+G++PPCA +I + RV V + DP+ RV G+G+ L Sbjct: 61 AGALAEGADVFVTLEPCSHFGKTPPCADALIAAKVARVYVGMVDPNPRVCGKGISKLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + ++ + LK A++ D I AG S +T S+ Sbjct: 121 GIQVEAPLLEEKCRALNEPFIKHVTTGLPFVILKTAMTMDGKIATAGMDSKWVTSEKSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR++ D I+VG+GT++ DDP LT R+ G +P+R+++D ++ D+ ++ Sbjct: 181 YVHKLRSELDVIMVGVGTIIKDDPLLTSRIPG--GRNPLRVVVDSKLRIPPDAHVLHCDS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 A ++ T + D ++ C D DL L+ L RGV S+L+EGGA Sbjct: 239 TAKTVVATISSDEAQVSRLAGLGAEVLSCGEDGDRVDLCCLMAKLGKRGVQSVLLEGGAE 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLE 353 +A + ++D + + + ++ G+ G V G D+ ++ Sbjct: 299 LAGEALRKGIIDKCMFFYAPKLVAGDGLGPFAGNGAGKMADALKLQWVTVTKIGVDILVQ 358 Query: 354 YIGKNLCLQE 363 + +CLQ Sbjct: 359 GYPEKICLQG 368 >gi|325282059|ref|YP_004254601.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM 20712] gi|324313868|gb|ADY34421.1| riboflavin biosynthesis protein RibD [Odoribacter splanchnicus DSM 20712] Length = 397 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 189/366 (51%), Gaps = 12/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M+ A + G + NP V +IVKDG +IG G G HAE A ++ Sbjct: 21 METKDREYMNRARILADRGRGWVNPNPLVGAVIVKDGRIIGEGWHERYGGLHAERNAFKQ 80 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ GAT YVTLEPC HYG++PPC + +IE I RVVV + DP+ V+G+G++ L + Sbjct: 81 CTEDPAGATLYVTLEPCCHYGKTPPCTEAVIENRIARVVVGLLDPNPLVAGKGIEMLRKA 140 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI+V+ +E E + +L +R I +K A++ D I S +TG S+ Sbjct: 141 GIVVETGVEEEKLREQNRVFLKYITTRRPWIVMKTAMTLDGKIAAYTGDSHWVTGEESRK 200 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V +R+ I+VG GTV ADDP L CRL G + P+RII+D ++ DS++++TA Sbjct: 201 KVQEMRSVLMGIMVGSGTVKADDPLLNCRLKG-EVRQPVRIIVDSTAAIATDSQLVRTAD 259 Query: 242 LAPVIIV-TENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 ++ T D + ++K + I C DL+ L T L G+ S+L+EGG Sbjct: 260 RYRTLVAHTSRADAGKLVQLQQKGVETILCPGCDNRVDLQALTTKLGQAGIDSVLLEGGG 319 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + +F+ LVD + + + +IG +P+E + V + G D Sbjct: 320 ELNEAFLRQGLVDEVYAFIAPKLIGGKDAKTPVEGKGIAWMKEAIALQSVSIEKVGEDFL 379 Query: 352 LEYIGK 357 ++ + Sbjct: 380 IKGFPQ 385 >gi|255528573|ref|ZP_05395347.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|296188130|ref|ZP_06856522.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|255507738|gb|EET84204.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] gi|296047256|gb|EFG86698.1| riboflavin biosynthesis protein RibD [Clostridium carboxidivorans P7] Length = 370 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 193/365 (52%), Gaps = 12/365 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M AL + G + NP V +IV +G ++G+G + G PHAEV AL+EAG Sbjct: 7 NLDEYYMKMALNLALKGQGNVNPNPLVGAVIVNNGNIVGQGYHKFYGGPHAEVYALKEAG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+G YV+LEPCSHYG++PPCA+ +++ GI++VV+ + DP+ V+G G++ L + G+ Sbjct: 67 ESAKGGELYVSLEPCSHYGKTPPCAEAVLKAGIKKVVIAMKDPNSLVAGNGIKLLEKNGV 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E K ++ EK + LK A++ D I S ITG S+ V Sbjct: 127 EVIVGVLEEEAKKVNEIFIKYITEKTPFVILKTAMTLDGKIATKTGESQWITGEESRKYV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + I+ GIGT+ D+P LT R SP II+D + ++SKI T Sbjct: 187 HTIRNRVMGIMAGIGTIKKDNPLLTTRFIE-DGKSPTAIIVDSKLSIPVESKIFTTLNER 245 Query: 244 PVII-VTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 +II TE D +K I II DLK L+ L G+ S+L+EGG + Sbjct: 246 KIIIACTEEFDAKKKEELEQKGIKIIITPKDNNRVDLKYLMKELGKEGIDSILLEGGGEL 305 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353 S ++S++VD I+ + + ++G +P+E +E V + G D+ +E Sbjct: 306 NFSALDSKIVDKILCFIAPKILGGASAKTPVEGSGIEILKNAVLINKMNCKNVGEDLLIE 365 Query: 354 YIGKN 358 N Sbjct: 366 GYFNN 370 >gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittAA] gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittAA] Length = 372 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 195/373 (52%), Gaps = 20/373 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL + Sbjct: 4 FSSQDHVFMQRALDLATKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQ 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+G TAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 64 AGENAKGTTAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDA 123 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + +L R + + LK+A+S D MA S ITG +++ Sbjct: 124 GIESAVNLLSDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARS 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V +RA+S A+L T++ADDP L R + E P+R+ILD ++ Sbjct: 184 DVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRI 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 K+ T +PV +V+ ++P F II LK+L+ L R + +L Sbjct: 244 QPTHKLFLT--YSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQINTL 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346 VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 300 WVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQI 359 Query: 347 GSDVCLEYIGKNL 359 G D+ L Y K + Sbjct: 360 GDDIKLTYTPKGI 372 >gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis KIM 10] gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis biovar Microtus str. 91001] gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis IP 32953] gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Antiqua] gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Nepal516] gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Pestoides F] gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CA88-4125] gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Angola] gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. F1991016] gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. IP275] gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. E1979001] gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. B42003004] gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1] gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis YPIII] gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pseudotuberculosis PB1/+] gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CO92] gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Pestoides A] gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. India 195] gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Nepal516] gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27] gi|294504911|ref|YP_003568973.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis Z176003] gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis KIM 10] gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis biovar Microtus str. 91001] gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Yersinia pseudotuberculosis IP 32953] gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Yersinia pestis Nepal516] gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Antiqua] gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CO92] gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis Pestoides F] gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia pestis CA88-4125] gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola] gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. IP275] gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. F1991016] gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. E1979001] gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. B42003004] gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis YPIII] gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis PB1/+] gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Nepal516] gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. India 195] gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Yersinia pestis Pestoides A] gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis D106004] gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis D182038] gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27] gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Yersinia pestis Z176003] Length = 369 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + + D ++ + Y + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|119486402|ref|ZP_01620460.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106] gi|119456304|gb|EAW37435.1| riboflavin biosynthesis protein [Lyngbya sp. PCC 8106] Length = 368 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 113/356 (31%), Positives = 177/356 (49%), Gaps = 9/356 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA 63 FD + M L +R +G T+ NP V ++V+D +IG G G PHAEV AL +A Sbjct: 12 EFDRQMMLRCLELARQALGKTAPNPLVGSVVVQDNYNIIGEGFHPGAGQPHAEVFALRDA 71 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GAT YV LEPC+HYGR+PPC + +I+ + +VVV + DP+ V+G+G++ L Q G Sbjct: 72 GEQAKGATVYVNLEPCNHYGRTPPCTEALIKAKVAKVVVGMIDPNPLVAGQGVERLKQAG 131 Query: 124 IIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V +E E ++ R + + K A++ D I S IT ++ Q Sbjct: 132 IEVIVGVEQEACQQLNEGFIHRILHHQPLGIFKYAMTLDGKIATTTGHSAWITSPTARQQ 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR DA++VG TV D+P LT G E +P+R+++ L L + + Sbjct: 192 VHQLRVACDAVIVGGNTVRRDNPHLTTHNQG--EPNPLRVVMSRKLDLPLQANLWDITEA 249 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ T++ DP +KK + ++ K ++ L R S+L E G +A Sbjct: 250 NTLVFTTKDADPDCQEQLQKKGVEVVVLSPLTPKTVMAHLYERQFLSVLWECGGTLAAQA 309 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I + I+ + + +IG SP+ + L + V GSD +E Sbjct: 310 IAEGAIQKILAFIAPKIIGGKTASSPVGDLGLTQMNEALTLKRVTLHSIGSDYLIE 365 >gi|288555991|ref|YP_003427926.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4] gi|288547151|gb|ADC51034.1| riboflavin specific deaminase [Bacillus pseudofirmus OF4] Length = 360 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 181/358 (50%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + G TS NP V ++VKDG ++G G G HAEV AL+ AGE+ Sbjct: 3 DIDYMKLALTLAEQTRGQTSPNPMVGSVVVKDGAIVGMGAHLKAGEGHAEVNALKMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPCSHYG++PPCA IIE ++RVVV DP+ VSGRG++ L GI + Sbjct: 63 AEGATIYVTLEPCSHYGKTPPCADLIIEKQLKRVVVATVDPNPEVSGRGIKRLRDSGITV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+E + KR +T+K A + D S ITG ++ VH Sbjct: 123 DVGVCEAEAIELNRMFFHFIQTKRPFVTMKTASTLDGKTATVTGESKWITGEEARLDVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVGIGTVL+D+P LT RL +P+RIILD H +L S++ Sbjct: 183 DRHIHDAILVGIGTVLSDNPALTTRLPNG-GRNPIRIILDRHLRLPESSQVACDQAAKTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + TE+ A R +++I + +L L R V +L VEGG V SFI Sbjct: 242 VFTTEHASSEKEEALRMLGVDVIRLRDYSIPSILKELGKRRVMTLYVEGGQEVNGSFIKE 301 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 R V+ +I Y + +IG P+ + + + G D+ + + K Sbjct: 302 RAVNQVITYVAPKMIGGKNAPTSVGGEGIPSINQALELQVIDVVQVGQDIKITSLVKE 359 >gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G] gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68] Length = 361 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|229061784|ref|ZP_04199117.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603] gi|228717530|gb|EEL69194.1| RibD (Riboflavin-specific deaminase) [Bacillus cereus AH603] Length = 379 Score = 368 bits (944), Expect = e-100, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 187/368 (50%), Gaps = 12/368 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ G TS NP V ++VKD ++G G G HAEV AL AGE Sbjct: 12 DQEYMRIALQLAQGTSGQTSPNPMVGAVVVKDSNIVGMGAHMRAGEEHAEVHALHMAGER 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +IE ++RVV+ D + VSG G + L + I + Sbjct: 72 AKGATVYVTLEPCSHFGKTPPCCELLIEKEVQRVVIATLDCNPLVSGNGKRKLEEAAIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + + K+ +T+K A+S D S ITG ++ VH Sbjct: 132 TTGVLEAEATLLNRYFFHYMKTKQPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQ 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DAILVG+ TVL D+P LT R+ P+R+ILD H + S +I L Sbjct: 192 YRHIHDAILVGVNTVLTDNPHLTTRIPNG-GKHPIRVILDTHLRTPPSSHVITDGLTPTW 250 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 IIV ++ + ++ NI + + +++ +L++L + + SL VEGG V +F+ Sbjct: 251 IIVGKDVNKEKIASYESNNIAVFQMKTQQIEIQDVLSLLGEKQILSLFVEGGQTVHANFL 310 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 + + I+ Y S +IG P+ K + G+D+ + K+ Sbjct: 311 KTNSFNEIVTYISPKLIGGKDAPTLFGGAGFSKLQDALSLTIQEMKQIGNDIKIVATLKS 370 Query: 359 ---LCLQE 363 CLQE Sbjct: 371 EVTECLQE 378 >gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031] gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031] Length = 372 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 193/373 (51%), Gaps = 20/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GATAYVTLEPC+HYGR+ PCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGATAYVTLEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S IT + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ +P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPDFCEQIILPKENLLKELMRELGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGK 357 G D+ L Y K Sbjct: 358 QIGDDIKLTYTPK 370 >gi|306820099|ref|ZP_07453747.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551877|gb|EFM39820.1| riboflavin biosynthesis protein RibD [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 365 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 178/362 (49%), Gaps = 12/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D ++M A+ ++ +G TS NP V +IVKD +IGRG G HAEV AL+ Sbjct: 2 LKDIDKKYMKLAIDLAKNGIGRTSPNPIVGAVIVKDNQIIGRGWHEKYGEAHAEVNALDN 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GAT YVTLEPC H+G+ PPC IIE GI VV+ DP+ +VSG+G Q L Sbjct: 62 CQVSPNGATMYVTLEPCCHFGKQPPCTSKIIESGISHVVIGSFDPNPQVSGKGSQILKNS 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + +++ E + R ++ LK A++ D I S ITG ++ Sbjct: 122 EIKVTQSVLQRECDELNTVFFHYIKTNRPYVILKYAMTADGKIATYTGESKWITGEKARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH R + AI+VG+GTVL D+P L CR+ ++P+R+I D + S ++KTA Sbjct: 182 QVHRDRDRYSAIMVGVGTVLKDNPMLNCRIE--NGNNPLRVICDTKLRTPFTSNVVKTAS 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 P +I T ++D + +I DL +L+ +L + S++VEGGA Sbjct: 240 EIPTLIATASEDNARWRQYEAYGCKLIKIPKDGESIDLVELIKVLGENKIDSVIVEGGAK 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352 + S + + L++ + +Y + G +P+ L V F D L Sbjct: 300 LNWSILKASLMNKVQVYVGAKLFGGANAKTPIAGDGLAFPNESVSMKLSSISKFDDDCLL 359 Query: 353 EY 354 EY Sbjct: 360 EY 361 >gi|317128514|ref|YP_004094796.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM 2522] gi|315473462|gb|ADU30065.1| riboflavin biosynthesis protein RibD [Bacillus cellulosilyticus DSM 2522] Length = 362 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 182/355 (51%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M A+ ++ G T+ NP V +IV + ++G G G HAE A+E A + Sbjct: 1 MDNKYMKMAIELAKVTEGHTTPNPVVGAVIVNNNQIVGFGAHLKAGEHHAEKHAIEMAKD 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYGR+PPCA +IE GI++V++ DP+ +VSGRG++ L GI Sbjct: 61 KTEGATIYVTLEPCSHYGRTPPCADAVIEAGIKKVIIGSVDPNPKVSGRGIKKLEDAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + M+ E + K+ +TLK A S D I S IT S+ VH Sbjct: 121 VEVGCMKEETDKLNDVFFHFVNTKKPFVTLKSATSLDGKIATRTGESQWITSEESRKDVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR ++DAILVGI TV+ DDP LT RL +P+R+ILD ++ + +K+I Sbjct: 181 QLRHKNDAILVGINTVIKDDPALTTRLPDG-GKNPIRVILDRELRIPMTAKLINDHASLT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +I T + R K ++ D ++ LL +L +TSLLVEGG V SF Sbjct: 240 WVITTRLANKEKIDLLRDKGTKVLILDDDKIEISSLLYLLGEHNITSLLVEGGGTVNDSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 + S +I+Y + ++IG S +E K + G+D+ L Sbjct: 300 LKSGEFQQVIVYIAPLLIGGEDALSSFSGSGIEKLADAKKLKVQSLEQIGNDIKL 354 >gi|229080603|ref|ZP_04213123.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2] gi|228702704|gb|EEL55170.1| Riboflavin biosynthesis protein [Bacillus cereus Rock4-2] Length = 360 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 124/352 (35%), Positives = 189/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N A + + +L ++L +L +GV+SLL+EGG V SFI ++ Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D IILY + +IG PS +E + K + D+ IGK+ Sbjct: 299 LMDKIILYFAPKIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 346 >gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia mollaretii ATCC 43969] gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia mollaretii ATCC 43969] Length = 369 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 AHGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLAD+P LT R + L P+RIILD +++ Sbjct: 184 FRAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVDADEQPWPENIEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F+ G D+ Sbjct: 302 GPQLAGALLEAGVVDELILYIAPKLLGSDARGLCELAGLTSLSQAPEFVFSDVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|157694276|ref|YP_001488738.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus pumilus SAFR-032] gi|157683034|gb|ABV64178.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus pumilus SAFR-032] Length = 363 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 13/367 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP R+M+ AL +R G TS NP V +IV++ ++G G G PHAE+ AL Sbjct: 1 MP---HHERYMNLALENARAMKGQTSPNPLVGAVIVRENEIVGVGAHMKAGEPHAEIHAL 57 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + AG++A+GAT YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L Sbjct: 58 KMAGDKAKGATIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQ 117 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ ++E E + + +K +TLK ++ D I A S IT S Sbjct: 118 DAGIQVITGVLEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETS 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H +R+ +DAILVG TV+ DDP LT R+ + P+RI+LD L +KI+ Sbjct: 178 RYDAHHIRSINDAILVGAQTVIHDDPSLTARIP--NGNHPIRIVLDSKLSTPLTAKIVTD 235 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGA 296 + I T+ D A +++ D L+++L +L + V+SL++EGG Sbjct: 236 QMAPTWIFTTKQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGEKNVSSLMIEGGG 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + SF+ +LVD +++Y + +IG PS + + D +E +G Sbjct: 296 QINASFLEQQLVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQL----SVETLG 351 Query: 357 KNLCLQE 363 K++ + Sbjct: 352 KDIKITG 358 >gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae 6P18H1] gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae 6P18H1] Length = 372 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 196/375 (52%), Gaps = 20/375 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE A+GA AYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENAKGAIAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L T++ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ K+ T +PV +V+ ++P F II LK+L+ L R + Sbjct: 242 RIQPTHKLFLT--HSPVWLVS--NEPRDLTGFPDFCEQIILPKENLLKELMQELGRRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 +L VE GA +A S I+++LVD +I+Y + ++G+ L + + + Sbjct: 298 TLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELE 357 Query: 345 YFGSDVCLEYIGKNL 359 G D+ L Y K + Sbjct: 358 QIGDDIKLTYTPKGI 372 >gi|300871035|ref|YP_003785907.1| riboflavin biosynthesis protein RibD [Brachyspira pilosicoli 95/1000] gi|300688735|gb|ADK31406.1| riboflavin biosynthesis protein, RibD [Brachyspira pilosicoli 95/1000] Length = 365 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 119/364 (32%), Positives = 181/364 (49%), Gaps = 16/364 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 ++M A+ ++ G TS NP V +IVKD VIG G G HAE+ A A G Sbjct: 3 EKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDRVIGIGYHKKYGENHAEINAFLNAKENG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA+ YVTLEPCSHYG++PPCA II+ +++V++ D + +V+G G++ L GI Sbjct: 63 EDVEGASIYVTLEPCSHYGKTPPCADAIIKNKLKKVIIGCVDSNPKVAGNGIKKLKDAGI 122 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E + K + +K A++ D I S IT ++ Sbjct: 123 EVVVNVLEEECRKLNEVFFYYIANKIPFVVMKYAMTMDGKIATVSGKSKWITSEKTREHS 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + AI+VGI TV+ D+P L CRL +P+RIILD K+SLDS I KT+ Sbjct: 183 HRFRNKYSAIMVGINTVIEDNPMLNCRLP--NTRNPIRIILDSSLKISLDSNICKTSKDI 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILV-GRGVTSLLVEGGAAV 298 I T + D + II + + LK+L+ IL + + S+ VEGGA++ Sbjct: 241 KTFIATVSGDEKKIKELEGLGVEIIKTESDNGRVSLKELMKILGEEKNIDSVYVEGGASL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 S + +LV+ ++Y + + G SP+ +++ +R D+ LE Sbjct: 301 HASLLKEKLVNKALVYIAPKIFGGFEAKSPIGGEGIDEPDNAIRLVGNSITKIEEDLFLE 360 Query: 354 YIGK 357 Y K Sbjct: 361 YYLK 364 >gi|325508006|gb|ADZ19642.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum EA 2018] Length = 365 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 11/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + G + NP V +IVKD ++G G G HAEV AL AG++A Sbjct: 3 EAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGKDA 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + GI ++ Sbjct: 63 EGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIEVI 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +M+ E + ++ KR IT+K+A + D I S I+G S+ VH L Sbjct: 123 TGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVHHL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T +I Sbjct: 183 RSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKII 242 Query: 247 IVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T D ++II + +L LL L G+ S+L+EGG+ + S Sbjct: 243 IATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352 FI +D I+ + + +++G + +EK ++ + G D+ + Sbjct: 303 FIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 358 >gi|15893879|ref|NP_347228.1| riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum ATCC 824] gi|15023459|gb|AAK78568.1|AE007574_6 Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Clostridium acetobutylicum ATCC 824] Length = 383 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 187/356 (52%), Gaps = 11/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + G + NP V +IVKD ++G G G HAEV AL AG++A Sbjct: 21 EAFMKRALEIAEKGSGYVNPNPMVGAVIVKDNKIVGEGYHEKFGGNHAEVNALNMAGKDA 80 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+ YVTLEPCSHYG++PPCA +++ GI+RV++ ++DP+ VS +G++ L + GI ++ Sbjct: 81 EGSELYVTLEPCSHYGKTPPCALAVVKAGIKRVIIAMEDPNPLVSTKGIKILKENGIEVI 140 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +M+ E + ++ KR IT+K+A + D I S I+G S+ VH L Sbjct: 141 TGVMKKESEKLNEVFIKYITTKRPFITMKMASTLDGKICTVSGESRWISGQTSRKYVHHL 200 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ +I+VG+GT + D+P LT R+ G SP+ II+D ++ D +I T +I Sbjct: 201 RSKYMSIMVGVGTAINDNPLLTTRIEGENVRSPIAIIVDSKLRVPKDLRIFNTLQERKII 260 Query: 247 IVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T D ++II + +L LL L G+ S+L+EGG+ + S Sbjct: 261 IATTEYADKNKENELINMGVSIIKTPNKNGRVNLDYLLDELGKIGIDSVLLEGGSELNFS 320 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352 FI +D I+ + + +++G + +EK ++ + G D+ + Sbjct: 321 FIKEENIDKIMCFIAPMIVGGEKAKGAVGGKGIEKLKDSIKIYDMDSEKIGEDILV 376 >gi|125624336|ref|YP_001032819.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris MG1363] gi|44662840|gb|AAS47500.1| riboflavin-specific deaminase/reductase [Lactococcus lactis subsp. cremoris NZ9000] gi|124493144|emb|CAL98108.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris MG1363] gi|300071120|gb|ADJ60520.1| riboflavin biosynthesis protein RibD [Lactococcus lactis subsp. cremoris NZ9000] Length = 362 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 119/359 (33%), Positives = 188/359 (52%), Gaps = 12/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D FM+ A+ +R G + NP V +IV DG +IG+G G HAE+ A + Sbjct: 2 ENDEHFMNLAILLARKGGGNVNPNPQVGAIIVNDGRIIGQGYHEKYGEAHAEINAFKSCI 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E G+T YVTLEPC+H G+ PPC + II+ ++RVV+ DP+ V+G+G++ + + GI Sbjct: 62 ESPEGSTIYVTLEPCAHQGKQPPCFEAIIKNKVKRVVIGSLDPNPLVAGKGIEAMKKAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +++E E K + ++ ++ +K A++ D I S ITG ++ +V Sbjct: 122 DVSLKVLEKECKDLNKIFFHYVTQRTPYVMMKYAMTLDGKIATYKGQSKWITGEKARQKV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R++ AI++G+ T+L DDP+LT R+ +P+RII D + L SKI+ TA Sbjct: 182 HEDRSRFMAIMIGVETLLKDDPQLTARI--KNGINPIRIICDTQLRTPLTSKIVSTAFEI 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299 P II T N++ AF + I+ DLK L+T L R + SL++EGGA + Sbjct: 240 PTIIATSNENIQKHQAFIEAGCEILLVSSISKHLDLKDLITKLGEREIDSLILEGGARLN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353 S + + +V + Y + + G PS +E +E D Y G D+ LE Sbjct: 300 ASALKAGIVQKVQAYIAPKIFGGKEAPSSVEGLGVEHPDQAYLLDRPQVAYLGEDILLE 358 >gi|188534657|ref|YP_001908454.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99] gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99] Length = 367 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEVYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +RGAT YVTLEPCSH+GR+PPC +I G++RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 SRGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL GTVLAD+P LT R + L P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I A + + P + I + D DL +L +L + + SL VE Sbjct: 243 RLI--AQPGETWLARTSSCPQQWPENVSQLIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA A + + + +VD +I+Y + ++G+ G LE F G D+ Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAGRALCQLPGLETLAAAPAFTFSDIRQVGPDL 360 Query: 351 CLEYIG 356 L Sbjct: 361 RLTLTP 366 >gi|188584764|ref|YP_001916309.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349451|gb|ACB83721.1| riboflavin biosynthesis protein RibD [Natranaerobius thermophilus JW/NM-WN-LF] Length = 380 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 192/369 (52%), Gaps = 16/369 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M AL + G T+ NP V ++VK+ ++ +G G PHAE ALE+AG E Sbjct: 8 DRQYMDRALDLAWKGWGKTNPNPLVGAVLVKNDDIVAQGYHGRLGGPHAEAVALEKAGRE 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G T YVTLEPC HYG++PPC IIE G++RVV+ DP +++G+G++ L Q GI + Sbjct: 68 ASGTTMYVTLEPCCHYGKTPPCTDKIIEAGVKRVVIASLDPHEKMAGKGVKKLRQAGIKV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E + + V ++ K +S D I S IT ++ H Sbjct: 128 EVGLKKAEAEKQNEIFRKYIVTGLPYMIGKWGMSLDGKIATHTGDSRWITSEKARFDTHR 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+ AI+VGIGTV ADDP LTCR P+RI++D H +LSL SK+++ P Sbjct: 188 LRARVAAIMVGIGTVKADDPLLTCRHPNYPGQHPVRIVVDSHLRLSLQSKVLEKISETPT 247 Query: 246 IIVTENDDP------VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEG 294 II T + +A ++Y D+ +L+ +L RG+ S+LVEG Sbjct: 248 IIATSEEIKHKSKEMEIAKQIENLGGEVLYLPQTSTGKVDIFELVKLLGQRGLDSVLVEG 307 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G + S I + D I+Y +VIG P+P+ K F ++ +++ EY Sbjct: 308 GETLHGSLIEANYYDKYIVYLGNLVIGGTNSPTPVGG----KGFQALKDSVMLNNMEYEY 363 Query: 355 IGKNLCLQE 363 G ++ ++ Sbjct: 364 FGDSIRIEA 372 >gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM 2379] gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter propionicus DSM 2379] Length = 367 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 199/366 (54%), Gaps = 11/366 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL +R +G TS NP+V C+IVKDG+++G G G HAE+ ALE AG Sbjct: 2 TDDIRQMKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGA +VTLEPC H G++PPC+Q +I G+RRVV + DP+ RVSG GL L GI Sbjct: 62 ESARGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E + ++ + H+T K A++ D I S I+ S+ V Sbjct: 122 QVVCGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RA+ DAI+VG+ T++ADDP+LT R ++ +P+R+++D + +++ Sbjct: 182 HRMRARMDAIMVGVDTIIADDPQLTVR--HVRGRNPLRVVVDTRLRTPESVRVLGDGNAV 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299 +I T +P + L ++ + I+ CD + +K L+ L RGV S+L+EGG +A Sbjct: 240 NTLIATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLA 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355 S + L+D + + + ++G G S + +E+ ++ G D+ + Sbjct: 300 GSMLEQGLIDEFVFFLAPKILGSDGFSPFSLVGRTSMEQASRLNIIKVSRSGIDIVVHAR 359 Query: 356 GKNLCL 361 + C Sbjct: 360 SEAPCS 365 >gi|144897824|emb|CAM74688.1| Riboflavin biosynthesis protein [Magnetospirillum gryphiswaldense MSR-1] Length = 370 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 148/364 (40%), Positives = 213/364 (58%), Gaps = 10/364 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S D M AAL ++ +G NP+V C+IV DG V+GRG T GG PHAE +AL Sbjct: 5 TISDGDRAHMRAALALAKRGLGNVWPNPAVGCVIVADGRVVGRGWTQPGGRPHAETEALA 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG ARG TAYVTLEPCSH+G++PPCA+ ++ GIRRVVV + DPD RV+GRG+ L Sbjct: 65 MAGALARGGTAYVTLEPCSHHGKTPPCAEALVAAGIRRVVVAIQDPDPRVAGRGIALLQA 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ +V +M E +L++ R +T+K+A + D I G S ITG ++ Sbjct: 125 AGLSVVTGVMAEEAAELNAGFLSKVTRGRPLVTVKLATTLDGRIATHGGESRWITGAAAR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 HLLRA++DAI+VG GTVLADDPELTCRL GL E SP+RI++D +L L SK++ TA Sbjct: 185 QAGHLLRAETDAIMVGSGTVLADDPELTCRLPGLSERSPVRIVVDGRLRLPLTSKLVSTA 244 Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295 ++T E + A+ + ++++ DL + + +L G+T +LVEGG Sbjct: 245 NDVATWVLTQEGAEQDRREAYEESGVDVVELPANDQGLDLDQAMRVLAESGITRVLVEGG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVC 351 A + + + LVD ++ +R+ V+G G+P+ + G F CV G+D+ Sbjct: 305 AHLTATLLRQGLVDRLVWFRAARVMGGDGLPAAVSFGVDHLSQMPGFECVDVRRIGADLV 364 Query: 352 LEYI 355 Y Sbjct: 365 ENYR 368 >gi|225181336|ref|ZP_03734780.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT 1] gi|225167917|gb|EEG76724.1| riboflavin biosynthesis protein RibD [Dethiobacter alkaliphilus AHT 1] Length = 367 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 125/359 (34%), Positives = 191/359 (53%), Gaps = 12/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D R+M AL + G TS NP V ++VKDG +G G G PHAE+ ALEEAG Sbjct: 2 DADERYMWLALDLAAQGQGTTSPNPMVGAVLVKDGETVGTGYHQKAGGPHAEIIALEEAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPC II G+R+VVV + DP+ V+G GL+ L + GI Sbjct: 62 EAARGATLYVTLEPCSHTGKTPPCVDRIIAAGVRKVVVAMQDPNELVNGLGLKKLQEAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E + ++ +R +T+K A++ D I S I+G S+ Sbjct: 122 KVKSGVLEEKALRLNEVFVKYITSRRPFVTMKAAMTMDGKIATRTKASRWISGERSREFG 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR +DAI+VGIGT+LAD+P LT RL +P+RI++D LDSK++ Sbjct: 182 HRLRHHTDAIMVGIGTLLADNPSLTTRLPEG-GKNPLRIVVDSKANTPLDSKVVAENPEK 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAV 298 +I VT+ D A + K + + L L+ L ++S+LVEGG+ + Sbjct: 241 TLIFVTDLADQERISALQAKGVGVEVLPADPEGRVPLDLLMDNLGKHEISSVLVEGGSVL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +S + S LVD + + + ++ G P+P+ + + + ++ +D+ + Sbjct: 301 NYSLLASGLVDKVYFFMAPLIFGGDTAPTPVGGTGVATVEEAWHVKDIEISHYDTDLLI 359 >gi|196037929|ref|ZP_03105239.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] gi|196031199|gb|EDX69796.1| riboflavin biosynthesis protein RibD [Bacillus cereus NVH0597-99] Length = 367 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 119/355 (33%), Positives = 188/355 (52%), Gaps = 10/355 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+A Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RG T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGGTIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E + K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T N + + +L ++L +L +G++SLL+EGG V SFI Sbjct: 243 FTTSNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGRKGISSLLIEGGGEVNASFI 302 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 303 ENELMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 353 >gi|220931842|ref|YP_002508750.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168] gi|219993152|gb|ACL69755.1| riboflavin biosynthesis protein RibD [Halothermothrix orenii H 168] Length = 366 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 132/361 (36%), Positives = 198/361 (54%), Gaps = 13/361 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M AL +R VG TS NP V ++V+D ++G G Y G PHAEV ALEEAG Sbjct: 2 DKDIYYMEKALTLARKGVGYTSPNPMVGAVVVRDDKIVGEGHHRYYGGPHAEVYALEEAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A G+T YV LEPCSHYG++PPC IIE G++RVV+ + DP+ RVSG+G++ L + GI Sbjct: 62 EKAFGSTLYVNLEPCSHYGKTPPCVFKIIESGVKRVVISMVDPNPRVSGKGIEMLKKAGI 121 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E ++ + + LK+A + D + + S +TG ++ V Sbjct: 122 EVTVGVLEEKARNLNEVFIKNITNRMPFVYLKMAQTLDGYLATSSGDSRWVTGKKARQYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR + DAILVGIGTVL DDP LT RL+ + ++I+LD K+ L + I+ A Sbjct: 182 HRLRHRVDAILVGIGTVLKDDPRLTTRLSDGKGKDSIKIVLDSKLKIPLTANILNQENDA 241 Query: 244 PVIIVTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296 PVIIV + D + K++ ++ D + +K+LL L +G++SLLVEGG Sbjct: 242 PVIIVCGHRVDSHKKKSLKQLKSVEVLSLDLNEYGQIPIKELLINLNKKGISSLLVEGGG 301 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVC 351 V +SF+ VD ++ + + ++G S + E K + + G D+ Sbjct: 302 RVNYSFLKEGFVDKMLFFIAPKLLGGSDGVSVFDGKGAEVMAKVKKLKKYKIEEIGEDIL 361 Query: 352 L 352 + Sbjct: 362 I 362 >gi|313889107|ref|ZP_07822763.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844847|gb|EFR32252.1| riboflavin biosynthesis protein RibD [Peptoniphilus harei ACS-146-V-Sch2b] Length = 371 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 134/360 (37%), Positives = 194/360 (53%), Gaps = 15/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL +R G T TNP V C+IVKD +IG+G G HAEV A+ +A Sbjct: 8 DIFYMERALEIAREGTGKTKTNPLVGCVIVKDDKIIGQGAHLKFGENHAEVNAILDAKSR 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ RGAT YV LEPCSHYG++PPCA+ I++ GIRRVV+ DP +VSGRG++ L G Sbjct: 68 GEDIRGATLYVNLEPCSHYGKTPPCAERIVKEGIRRVVIGTADPFEKVSGRGIKILEDAG 127 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + + E E + T KR + LK +S D I S IT S+ Sbjct: 128 ISVTEGLCEEECLNLNERFFTYLKNKRPFVVLKSGMSLDGKIATESGESKWITSEFSRAH 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR Q DAI+VGIGTVLADDP L R +++P+RII D ++ LD+K+++ L Sbjct: 188 GHELRGQLDAIMVGIGTVLADDPSLNTRHC-KYKNNPIRIITDSSLRIPLDAKVLRDDLD 246 Query: 243 APVIIVTEND-DPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + II T D + KN+ +I C + DLK L+ L ++S+L+EGG Sbjct: 247 SIAIIATTESCDKDKLEKLKAMKNVEVIICKEKDKRVDLKDLMEKLKDYDISSILLEGGR 306 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352 + + + LVD + + I++G GIP+ ++E ++ + D+ + Sbjct: 307 TLNAEMLKNNLVDKFYFFIAPILLGSKGIPAIGDLEIDELKDAIRIKDMKCEKLFDDILV 366 >gi|228922109|ref|ZP_04085419.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837525|gb|EEM82856.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 360 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 122/352 (34%), Positives = 188/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ A E+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAEEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR + +K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYILTKRPFVAIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+R+ILD ++ +++K+I I T Sbjct: 181 NAAILVGANTVQEDNPSLTTRIP--NGRNPIRVILDSTLRIPMEAKVITDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N A + + +L ++L +L +GV+SLL+EGG V SFI ++ Sbjct: 239 SNHAAEKKKALENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENK 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 299 LIDKLILYIAPKMIGGRMAPSFVEGAGITKMQDAIEFK----DISFTQVGKD 346 >gi|172038173|ref|YP_001804674.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142] gi|171699627|gb|ACB52608.1| riboflavin biosynthesis protein [Cyanothece sp. ATCC 51142] Length = 364 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 185/360 (51%), Gaps = 10/360 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D + M L +R +G TS NP V +IVK+G +IG G G PHAEV AL Sbjct: 2 MTPDNVDQQMMQRCLTLARRGLGYTSPNPLVGAVIVKEGKIIGEGFHLKAGEPHAEVFAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L Sbjct: 62 REAGEKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQ 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + + E+ A+ R + + LK A++ D I + S +TG S Sbjct: 122 EAGIEVTVGVEEAACLRLNEAFCHRILHNQPFGILKYAMTLDGKISSSTGHSAWVTGTKS 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +RA DA++VG TV D+P LT ++ +P+R+++ + L D+ + Sbjct: 182 RQLVHEMRAGCDAVIVGGNTVRRDNPHLT--IHQATGRNPLRVVMSRNLHLPQDANLWNV 239 Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + AP I+ TE +P L R+K + +I +++ +L R ++S+L E G + Sbjct: 240 EI-APTIVFTEWGKNPSLQTQLRRKGVEVIELSPLIPSQVMDVLCERQLSSILWECGGVL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 A I + I+ + + +IG SP+ LEK + V D+ +E Sbjct: 299 AAEAIAQGGIQKIMAFIAPKIIGGFSAASPVGNLGLEKMSDALSLQNVSLRQVDRDILVE 358 >gi|220909715|ref|YP_002485026.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425] gi|219866326|gb|ACL46665.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 7425] Length = 392 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 183/362 (50%), Gaps = 9/362 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D M L +R G T+ NP V C+IVKDG ++G G G PHAEV AL AG Sbjct: 23 DLDQIMMQRCLTLARQAQGQTAPNPLVGCVIVKDGEIVGEGFHPKAGEPHAEVFALRAAG 82 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A GAT YV LEPC+HYGR+PPC++ +++ GI RVVV + DPD RVSG G+ L GI Sbjct: 83 DRAVGATLYVNLEPCNHYGRTPPCSEAVVKAGIGRVVVGMVDPDPRVSGGGIARLRAAGI 142 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E + A++ R R LK A++ D I A S IT ++ +V Sbjct: 143 EVTVGVEEMACRDLNEAFIHRITYHRPFGILKYAMTLDGKIATAKGHSAWITDAAARTEV 202 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LRA D ++VG TV D+P+LT L+ ++ +P+RI++ L + + +T A Sbjct: 203 HRLRAGCDGVIVGGNTVRRDNPQLT--LHEVEGRNPLRIVMSRSLDLPSQAHLWQTQAAA 260 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++ + A + + + ++ D ++ L RG+ ++L E G +A I Sbjct: 261 TLVLTQPGHSLQIKSALQAQGVEVVVLDVLTPATVMDYLYDRGLLAVLWECGGRLAARAI 320 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE-YIGK 357 V + + + +IG PSP+ + L V+ GSD +E Y+ Sbjct: 321 AEGAVQKVWAFIAPKIIGGDQAPSPVGDLGLTTMTEALQLERVQWRTIGSDCLVEGYLPF 380 Query: 358 NL 359 NL Sbjct: 381 NL 382 >gi|258515514|ref|YP_003191736.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans DSM 771] gi|257779219|gb|ACV63113.1| riboflavin biosynthesis protein RibD [Desulfotomaculum acetoxidans DSM 771] Length = 367 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 189/367 (51%), Gaps = 15/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL + G TS NP V +IVK+G V+GRG G PHAE+ AL+EAGE Sbjct: 1 MDEQYMKMALDLAARARGRTSPNPMVGSVIVKNGAVVGRGYHKKAGTPHAEIHALKEAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGAT YVTLEPC H+GR+ PC + I+ GI+R VV + DP+ V+G+GL L + G+ Sbjct: 61 AARGATIYVTLEPCCHHGRTGPCTEAILSAGIKRAVVAMTDPNPLVAGKGLDILRKAGVE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ E ++ + LK A+S D I S ITG S+ VH Sbjct: 121 VVSGLLAEEAAKLNEVFIKYVSTGMPFVLLKTAMSLDGKIAAYTGHSRWITGSASRAYVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR DAIL+GIGT++AD+P LT RL +G++ P+R+I+D + ++K++ Sbjct: 181 HLRDSYDAILIGIGTLMADNPSLTARLSCPEDGVKGKDPVRVIVDSLARTPPEAKVLTQI 240 Query: 241 LLAPVIIV-TENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGA 296 AP II T II DL L L +TS+L+EGGA Sbjct: 241 SAAPTIIAITAAAPEERVQKLVAAGAQIIIAGNGPKIDLPYLFKSLTAIDITSILIEGGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 AV S + +L D ++ + + +IG P P+ + + F D+C Sbjct: 301 AVNASVLEQKLADKLLWFIAPKIIGGKEAPGPVGGRGVAAVSEALLLERISVQRFEEDIC 360 Query: 352 LE-YIGK 357 LE Y+ K Sbjct: 361 LEGYLRK 367 >gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM 1131] gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM 1131] Length = 371 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 188/371 (50%), Gaps = 19/371 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 1 MIEQDNMYMARAFELARKGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V+GRGL LSQ Sbjct: 61 AGDKAQGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQA 120 Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ + +L R +I LK+A S D + S IT ++ Sbjct: 121 GIETRSNVLLNDAEAANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARK 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230 V LRA++ AIL TV+ADDP LT R N L Q P+RI+LD H ++ Sbjct: 181 DVQALRAEASAILSTSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTS 289 + K+ T L +V N D + + + + + DL L+ L R V S Sbjct: 241 TSGHKV--TQLDGECWLVRSNPDENAVWQGQVEQLAVPADENGTDLVILMMQLAKRNVNS 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345 + VE GA +A S + LVD +I+Y + ++G PL F Sbjct: 299 IWVEAGAKLAGSLLKLGLVDELIVYIAPKLLGNSARGLVDFPPLNALIDAPKFEFTEVKQ 358 Query: 346 FGSDVCLEYIG 356 G D+ + Sbjct: 359 VGPDLRVRLRP 369 >gi|52080843|ref|YP_079634.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580] gi|52786214|ref|YP_092043.1| hypothetical protein BLi02475 [Bacillus licheniformis ATCC 14580] gi|52004054|gb|AAU23996.1| riboflavin-specific deaminase [Bacillus licheniformis ATCC 14580] gi|52348716|gb|AAU41350.1| RibD [Bacillus licheniformis ATCC 14580] Length = 362 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 179/354 (50%), Gaps = 9/354 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI + Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + + ++ ++TLK A S D A S IT ++ H Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ILVG GT+ ADDP LTCRL G + P+R++LD + L SK+I+ Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCRLPGA-VNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I T DP K+ + + D +L + +L L RG+ S+ VEGGA V SF+ Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 L II Y + +IG PS L + G D+ L Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKIGQDIKL 355 >gi|168486049|ref|ZP_02710557.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1087-00] gi|183570882|gb|EDT91410.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1087-00] Length = 366 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 188/367 (51%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 CLQE Sbjct: 360 IYPCLQE 366 >gi|291541288|emb|CBL14399.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Roseburia intestinalis XB6B4] Length = 396 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 184/358 (51%), Gaps = 15/358 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G Sbjct: 34 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA YVTLEPC HYG++PPC Q +IE GI V V D + V+G G++ L ++GI Sbjct: 94 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAKDINPLVAGGGIRQLREQGI 153 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +++ E + + K ++ +K A++ D I A S ITG ++ QV Sbjct: 154 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSKWITGEAAREQV 213 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+I++TA Sbjct: 214 HRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 271 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 II T D ++K II + DLK+L+ L G+ S+L+EGGA + Sbjct: 272 KTIIATCCQDEARIREYQKYACRIIVTEQADGKVDLKELMRQLGADGIESVLLEGGAMLN 331 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 S + + +V+ + Y + + G SP+ ++ + R G D+ + Sbjct: 332 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGMGVDHPDDAYCMVSQRVQQVGEDILI 389 >gi|77919046|ref|YP_356861.1| riboflavin biosynthesis protein RibD [Pelobacter carbinolicus DSM 2380] gi|77545129|gb|ABA88691.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pelobacter carbinolicus DSM 2380] Length = 371 Score = 365 bits (937), Expect = 6e-99, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 188/357 (52%), Gaps = 11/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM A+ +R G T NP+V LIVKDG ++GRG G PHAE+ AL EAG+ A Sbjct: 6 ENFMRQAIDLARRGEGRTRPNPAVGALIVKDGEIVGRGFHPKAGQPHAEIYALREAGDRA 65 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPCSH+GR+ PCA IIE G+ RV V DP+ +V+G G++ L GI V Sbjct: 66 RGADMYVTLEPCSHHGRTGPCADAIIEAGLARVYVGTLDPNPQVAGGGIRKLQGAGIEVH 125 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E+ + + + + + + LK A++ D A S +T S+++VH L Sbjct: 126 CGVLENLCRRIIAPFAKHILTAKPFVVLKSAMTLDGKTATASGHSQWVTSAASRHEVHKL 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALLAPV 245 R + D I+VGIGTVL DDP+LT RL P RI+LD ++ D+ I+ + A + Sbjct: 186 RDRMDGIMVGIGTVLQDDPQLTTRLPDEGGRDPERIVLDSSLRIPEDAAILNLQSSAATL 245 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T A R ++ DL L+T L RG+ S+L+EGGA + + Sbjct: 246 IATTARASKAKIEAIRAAGAEVLVLPESGGRVDLHALMTALGARGLQSILLEGGAELNGA 305 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353 F + LVD ++++ + ++G G + + VR +FG D +E Sbjct: 306 FWRAGLVDRVMMFIAPKIVGGDGGKGVFKGPGVLTMTEATVLEDVRVTHFGDDTLIE 362 >gi|319645199|ref|ZP_07999432.1| RibD protein [Bacillus sp. BT1B_CT2] gi|317393008|gb|EFV73802.1| RibD protein [Bacillus sp. BT1B_CT2] Length = 362 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 179/354 (50%), Gaps = 9/354 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R G T NP V ++VKDG V+G G G HAEV A++ AG Sbjct: 3 DAHYMNLALELARQGEGQTGANPLVGAVVVKDGEVVGMGAHLKYGEAHAEVHAIQMAGRH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPCSHYG++PPCA+ II G++RVVV +DP+ VSGRG++ L GI + Sbjct: 63 AEGAVIYVTLEPCSHYGKTPPCAELIIRSGLKRVVVAAEDPNPLVSGRGIEMLRSAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + + ++ ++TLK A S D A S IT ++ H Sbjct: 123 ETGVLKEQAEELNEKFMHFMRTGLPYVTLKAAASLDGKTATATGDSKWITSEEARMDAHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ILVG GT+ ADDP LTCRL G + P+R++LD + L SK+I+ Sbjct: 183 YRKNHQCILVGSGTIKADDPSLTCRLPGA-VNQPVRVVLDTTLSIPLQSKVIQDKEAPTW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I T DP K+ + + D +L + +L L RG+ S+ VEGGA V SF+ Sbjct: 242 IYTTSKADPEKVRNVEKEGVQVTVLDADELQVRDVLLHLADRGIASVFVEGGATVHASFV 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 L II Y + +IG PS L + G D+ L Sbjct: 302 KEGLYQQIIFYLAPKLIGGLQSPSILSGEGFQSMKDVPLLQFTTITKVGQDIKL 355 >gi|317470714|ref|ZP_07930099.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA] gi|316901849|gb|EFV23778.1| riboflavin biosynthesis protein RibD [Anaerostipes sp. 3_2_56FAA] Length = 359 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 185/357 (51%), Gaps = 13/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ ++ G T+ NP V +IVKDG VIG G G HAE AL+ ++ Sbjct: 3 EQYMRRAIELAKKGTGYTNPNPLVGAVIVKDGEVIGEGFHEAYGGLHAERNALKSCTKDP 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII-V 126 GA YVTLEPC HYGR+PPC + +I+ GIR+V V DP+ +V+G G++ L + GI Sbjct: 63 NGAELYVTLEPCCHYGRTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIEAE 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E + + ++ LK A++ D I + S ITG ++ V L Sbjct: 123 TGILDEECRGLNDIFFYYITHDTPYVVLKYAMTLDGKIAVRTGESKWITGGEAREHVQFL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AIL GI TV++DDP L R+ G ++P+R+I D ++ + SKI+++A + P I Sbjct: 183 RHRYAAILTGIHTVISDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTI 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I + A ++ C + DL +L+ IL + S+LVEGGA + S Sbjct: 241 IAACERN-EKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSV 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354 I + V+ + + + + G SP+E ++K + FG D+ LEY Sbjct: 300 IQAGAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEY 356 >gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O157:H7 str. LSU-61] Length = 361 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L P+RI++D +++ + I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|149011050|ref|ZP_01832355.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|149017852|ref|ZP_01834311.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|168492136|ref|ZP_02716279.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC0288-04] gi|225853791|ref|YP_002735303.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA] gi|237649748|ref|ZP_04524000.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI 1974] gi|237821446|ref|ZP_04597291.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CCRI 1974M2] gi|147764686|gb|EDK71616.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP19-BS75] gi|147931416|gb|EDK82394.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP23-BS72] gi|183573645|gb|EDT94173.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC0288-04] gi|225723048|gb|ACO18901.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae JJA] gi|301793457|emb|CBW35830.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae INV104] gi|332077484|gb|EGI87945.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA41301] gi|332204191|gb|EGJ18256.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA47901] Length = 366 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|15902208|ref|NP_357758.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae R6] gi|116515773|ref|YP_815688.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39] gi|148996604|ref|ZP_01824322.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|168576390|ref|ZP_02722273.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016] gi|182683162|ref|YP_001834909.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP14] gi|303255119|ref|ZP_07341195.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae BS455] gi|307066860|ref|YP_003875826.1| pyrimidine reductase, riboflavin biosynthesis [Streptococcus pneumoniae AP200] gi|15457706|gb|AAK98968.1| Riboflavin biosynthese; a deaminase [Streptococcus pneumoniae R6] gi|116076349|gb|ABJ54069.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae D39] gi|147757179|gb|EDK64218.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP11-BS70] gi|182628496|gb|ACB89444.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CGSP14] gi|183577789|gb|EDT98317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae MLV-016] gi|301801129|emb|CBW33802.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae INV200] gi|302597949|gb|EFL65019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae BS455] gi|306408397|gb|ADM83824.1| Pyrimidine reductase, riboflavin biosynthesis [Streptococcus pneumoniae AP200] Length = 366 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 5 str. 8401] gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella flexneri 5 str. 8401] gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70] gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6] Length = 361 Score = 364 bits (936), Expect = 8e-99, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 182/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D MA S IT ++ V RAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|308070849|ref|YP_003872454.1| riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681] gi|305860128|gb|ADM71916.1| Riboflavin biosynthesis protein ribD [Paenibacillus polymyxa E681] Length = 366 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 186/362 (51%), Gaps = 12/362 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL +R G T NP V +IV +G ++G G G PHAE+ AL AGE A Sbjct: 5 EKYMRLALENARSAKGQTEPNPLVGSVIVNNGRIVGIGAHLKPGEPHAEIHALRMAGEHA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GAT YVTLEPCSH+GR+ PCA+ I++ GIRRVV+ DP+ VSGRG+Q L GI ++ Sbjct: 65 QGATIYVTLEPCSHHGRTGPCAEAIVKAGIRRVVIAALDPNPLVSGRGVQILKDAGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E + V KR IT+K AV+ D I S IT ++ VH L Sbjct: 125 VGVCEQESIRMNEVFNQYIVSKRPFITIKSAVTLDGKIATRTSESKWITSEAAREDVHRL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + ILVG+ TV+ D+P+LT RL + +P+RIILD ++ LD+++I I Sbjct: 185 RNEHVGILVGVQTVIHDNPQLTTRLP--EGRNPIRIILDSKLRIPLDARVITDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 D + + + + +L ++L IL V+S+ VEGGA V S Sbjct: 243 FTGRVYDEGKRSQLEQLGVKVYTTQDENSERVNLPQMLDILGAAEVSSVFVEGGAEVNAS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ L D ++LY + ++G P L + V D+ + +G + + Sbjct: 303 FVQQGLADRLVLYIAPKLVGGRAAPGFLGGEGVSAMSDAVALH----DLSVTPVGVDWKI 358 Query: 362 QE 363 + Sbjct: 359 EG 360 >gi|295093779|emb|CBK82870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Coprococcus sp. ART55/1] Length = 382 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 186/371 (50%), Gaps = 21/371 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 FD +M A+ +R G + NP V +IVKDG +IG G G HAE A Sbjct: 9 EFDPSYMRRAIELARRGTGAVNPNPLVGAVIVKDGRIIGEGYHVRYGELHAERAAFASLK 68 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + +A GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+G + L Sbjct: 69 DQADAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFKRLRDA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++E + V K+ ++T+K A++ D I S ITG S+ Sbjct: 129 GIEVYTHCLKAECDAINGIFFKYIVNKQPYVTMKYAMTMDGRIATHTGASKWITGEASRA 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSK 235 V LR + I+ GIGTVLADDP LTCR+ + +P+RI+ D ++ DS+ Sbjct: 189 YVMELRNRHKGIMAGIGTVLADDPMLTCRIEKSTDRDTDNVRNPIRIVCDSKLRIPEDSQ 248 Query: 236 IIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVT 288 I++TA I+ T D + K ++II + DL++L+TIL G+G+ Sbjct: 249 IVQTAGEIETIVATTAAGASDSAKCERLKDKGVSIIETEDVDGQVDLRQLMTILGGKGID 308 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRR 343 +L+EGG + +S ++ LVD ++ + + G G SP+ ++ F Sbjct: 309 GILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADAHMFGLDEV 368 Query: 344 DYFGSDVCLEY 354 F DV L Y Sbjct: 369 RRFDEDVMLRY 379 >gi|218246081|ref|YP_002371452.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801] gi|218166559|gb|ACK65296.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8801] Length = 360 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 187/359 (52%), Gaps = 8/359 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V + ES + A++ R + + LK A++ D I S ITG S Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +RA DA++VG T+ D+P LT + +P+R+++ L ++ + +T Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTH--EVAGVNPLRVVMSKTLDLPSEANLWQT 238 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + + ++I + L R + + +I ++ +L RG++S+L E G +A Sbjct: 239 DIASTLVITERTRNSKLQAQLRNRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 I ++ I+ + + +IG P P+ + LEK V D+ +E Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIE 357 >gi|153954787|ref|YP_001395552.1| hypothetical protein CKL_2169 [Clostridium kluyveri DSM 555] gi|219855247|ref|YP_002472369.1| hypothetical protein CKR_1904 [Clostridium kluyveri NBRC 12016] gi|146347645|gb|EDK34181.1| RibD [Clostridium kluyveri DSM 555] gi|219568971|dbj|BAH06955.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 369 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 198/365 (54%), Gaps = 13/365 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M AL + G + NP V L+VK+G ++GRG + G PHAEV AL Sbjct: 1 MNYDNKDEHYMEIALELASKGEGFVNPNPQVGALVVKEGNIVGRGYHKFYGGPHAEVYAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +EAG++A G YVTLEPCSHYG++PPC + I+ GI++VVV + DP+ VSGRG+++L Sbjct: 61 KEAGDKAAGGQIYVTLEPCSHYGKTPPCVEAIVRAGIKKVVVALKDPNPLVSGRGIEFLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 KGI +V ++E E ++ +K + LK AV+ D I S IT S Sbjct: 121 NKGIEVVTGVLEKEALNINEIFIKYISDKLPFVILKSAVTLDGKIATVTGQSKWITCEES 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 +N VH +R + AI VGIGT+L+D+P LT RL + SP+ ++LD ++ LD KI T Sbjct: 181 RNFVHHIRNRVMAIAVGIGTILSDNPLLTTRL-EKKCKSPIAVVLDSKLRIPLDCKIFDT 239 Query: 240 ALLAPVII-VTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293 +II TE D K +++I C +LK L+ L G+ SL +E Sbjct: 240 LKYRKIIIACTEGYDEDKKYEIEKMGVDVIICPKDESGHVNLKILIEKLGNIGIDSLFIE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GS 348 GG ++ S ++S +VD +I + + +IG + +E +E V+ G Sbjct: 300 GGGSLNFSALSSGIVDKVIYFIAPKIIGGLEAKTSVEGKGIEDLNKAVKLKNISYLKSGE 359 Query: 349 DVCLE 353 D+ ++ Sbjct: 360 DMMIQ 364 >gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 369 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 182/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSHYGR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P++IILD H +++ Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + + D ++ + Y + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVDADDQPWPGNIEQLLLPRYGNGVDLVVLMMQLGKRNINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|158336980|ref|YP_001518155.1| riboflavin biosynthesis protein RibD [Acaryochloris marina MBIC11017] gi|158307221|gb|ABW28838.1| riboflavin biosynthesis protein RibD [Acaryochloris marina MBIC11017] Length = 387 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 188/366 (51%), Gaps = 10/366 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + + M L+ ++ G T+ NP V C+I +DG ++G G G PHAEV AL Sbjct: 18 NIDPHHQQMMQRCLQLAQKAAGFTTPNPLVGCVIERDGEIVGEGYHPKAGEPHAEVFALR 77 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A+GATAYV+LEPC+H+GR+PPC++ +++ G+ VVV + DPD RVSG+G++ L Sbjct: 78 AAGDKAKGATAYVSLEPCNHFGRTPPCSEALVKAGVATVVVGMVDPDPRVSGKGIERLRA 137 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ + E++ + A++ R + +R LK A++ D I S IT +++ Sbjct: 138 AGIQVITGVEEADCQRVNEAFVHRILYQRPFGILKYAMTLDGKIATTAGHSAWITKEVAR 197 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKII 237 VH LRA DA++VG TV D+P LT ++P+R++L L + + Sbjct: 198 AHVHRLRATCDAVIVGGNTVRRDNPHLTTHHKADANQPPNNPLRVVLSRTLDLPPTAHLW 257 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +T + +++ + + ++ + ++ D ++ L + + S+L E G Sbjct: 258 ETDIAPTIVLTQGHPNGEGQAYLEQQGVEVVNLDELTPATVMAYLGKKELLSVLWECGGT 317 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 ++ I V ++ + + ++G PSP+ + K VR G D + Sbjct: 318 LSARAIADGSVQKVLAFIAPKIVGGQNAPSPVGDLGFNKMTEALQLERVRWHIVGEDCLV 377 Query: 353 E-YIGK 357 E Y+ K Sbjct: 378 EGYLPK 383 >gi|113475344|ref|YP_721405.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Trichodesmium erythraeum IMS101] gi|110166392|gb|ABG50932.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Trichodesmium erythraeum IMS101] Length = 374 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 186/363 (51%), Gaps = 7/363 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D M+ L +R +G T+ NP V C+I+K+G +IG G G PHAEV AL Sbjct: 9 NQNQLDPLIMAHCLELARRALGNTAPNPLVGCVIIKNGQIIGEGFHPGAGYPHAEVFALT 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE+ARGATAYV LEPC+HYGR+PPC +I G+ RVV+ + DP+ V+G G+ L Sbjct: 69 EAGEKARGATAYVNLEPCNHYGRTPPCTDALIAAGVARVVIGMIDPNPLVAGAGVAKLQD 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V ++E+E + A++ R + LK A++ D I S +T ++ Sbjct: 129 AGIEVVVGVLEAECRELNEAFIHRMLYHCPFGILKYAMTLDGKIATTTGHSAWVTSQEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 ++VH LRA SDA+++G TV D+P LT R Q ++P+R+++ L ++ + + Sbjct: 189 SEVHKLRAISDAVIIGGNTVRRDNPFLTSR--STQANNPLRVVMSRSLDLPTEANLWDVS 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ + + R+K + ++ +++ L RG S+L E G +A Sbjct: 247 EAQTLVFTEIDSNQEFKEYLRQKGVEVLETSTLTPAVVMSNLYDRGFLSVLWECGGTLAA 306 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 + V I + + +IG P+P+ L K + ++ + +G + Sbjct: 307 RAMADGAVQKIWAFIAPKIIGGEIAPTPVGNLGLTKMTEAFELE----NISMRTVGCDYL 362 Query: 361 LQE 363 L+ Sbjct: 363 LEG 365 >gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168] gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168] Length = 367 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 191/368 (51%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDELYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP+LT R + L E P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I+ T+ DD V + R I + + DL LL +L + + SL V Sbjct: 242 HRIVSQPGE-TWFARTKEDDRVWPESVR--TIQVPEHNGHLDLVLLLMLLGKQQINSLWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + +VD +I+Y + ++G + LE+ F Y G Sbjct: 299 EAGPTLAGALLQAGVVDELIMYVAPKLLGSDARGLCVLPGLEKLADAPQFQFKEIRYTGP 358 Query: 349 DVCLEYIG 356 DVCL I Sbjct: 359 DVCLHLIP 366 >gi|182417348|ref|ZP_02948682.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521] gi|237668576|ref|ZP_04528560.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378778|gb|EDT76300.1| riboflavin biosynthesis protein RibD [Clostridium butyricum 5521] gi|237656924|gb|EEP54480.1| riboflavin biosynthesis protein RibD [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 111/358 (31%), Positives = 180/358 (50%), Gaps = 11/358 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + VG+ + NP V +IVKD VIG G G HAE A++ A E Sbjct: 1 MDEFYMKRALELAIKGVGMVNPNPMVGAVIVKDNKVIGEGFHEKYGHAHAERNAVKNAVE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPC+HYG++PPC +IE +R+VV+ + DP+ V+G+ ++ L + I Sbjct: 61 DIEGATVYVTLEPCAHYGKTPPCVDLLIEKKVRKVVIGMLDPNPLVAGKSIKKLKENNIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + E E + ++ K+ + +K +S D I +G S IT S+ H Sbjct: 121 VKVGVKEKECRKLNEVFIKYITTKKPFVIMKAGISIDGKIATSGGESKWITSERSRLHSH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVL+DDP LT R + P+RII+D K+ +SK+IK Sbjct: 181 ELRNRMSGIMVGINTVLSDDPSLTYR-GEHKGKDPLRIIIDSTLKVPFESKVIKYNNNNT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ EN D + K + +I + DL++++ L + S+L+EGG + Sbjct: 240 IVACVENADLIKKEKLEKMGVKVIETKSKKGKVDLQEVVERLGKDKIDSILLEGGGTLNF 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD + Y + +IG + + N + + G+++ +E Sbjct: 300 SALKEGIVDKVRFYIAPKIIGGQNSKNSVSGQGFYNLDDCVNLKDMSYEQMGNEIVVE 357 >gi|308272935|emb|CBX29539.1| Riboflavin biosynthesis protein ribD [uncultured Desulfobacterium sp.] Length = 380 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 189/362 (52%), Gaps = 14/362 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ + G TS NP V ++VKDG V G+G G HAEV A+++A + Sbjct: 16 DDLFYMKMAIDLAEKGRGFTSPNPMVGAVVVKDGKVAGKGYHEAYGKAHAEVNAIDDAKK 75 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ++ GAT YVTLEPC+H+G++PPC + IIE GI+RVV + DP+ V G G ++L GI Sbjct: 76 DSFGATLYVTLEPCNHFGKTPPCTKKIIESGIKRVVAAIRDPNPDVKGNGSEYLKNNGID 135 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ + E + ++ KR + +K A + D I S +TG S+ VH Sbjct: 136 VIFGVCGKEAEKQNEIFIKYTKTKRPFVMVKCASTLDGNIATKTGDSKWVTGEESRQFVH 195 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR SDAI+VGI TV D+PELT R++G+ SP+R+ILD +S D+ ++ + Sbjct: 196 RLRHYSDAIMVGIDTVKRDNPELTTRIDGMNGLSPVRVILDSRLSISEDALVLNKNSDSD 255 Query: 245 VIIVTENDDPVLAL-----AFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 I+V N P A+ +K I II +L L+ L G+TSLL+EGG Sbjct: 256 TIMVMSNHAPDKAVLQKKNRLEEKGIKIIESPAENNLINLDILMDTLGLMGITSLLIEGG 315 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVC 351 + V S + ++VD I + + ++G G+ G V FG D+ Sbjct: 316 SRVIASAFSQKIVDKIFFFYAPKILGGDGVSICRGPGPALMRDCLPVKEVGIQKFGDDIL 375 Query: 352 LE 353 +E Sbjct: 376 IE 377 >gi|229103925|ref|ZP_04234603.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28] gi|228679493|gb|EEL33692.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-28] Length = 360 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 122/352 (34%), Positives = 186/352 (52%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENANAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKVLQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEESKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+R+ILD ++ + + ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMKANVVTDEEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N A + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 239 SNHAEEKKKALENAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 346 >gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Escherichia coli O55:H7 str. USDA 5905] Length = 361 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 181/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R +I LK+ S D M S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L P+RI++D +++ + I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHHIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + + DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|221231089|ref|YP_002510241.1| riboflavin biosynthesis protein [Streptococcus pneumoniae ATCC 700669] gi|220673549|emb|CAR68035.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae ATCC 700669] Length = 366 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--ERKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|332709146|ref|ZP_08429113.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya majuscula 3L] gi|332352057|gb|EGJ31630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lyngbya majuscula 3L] Length = 372 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 187/363 (51%), Gaps = 8/363 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + + ++ +R +G T+ NP V C+IV++G ++G G G PHAEV AL Sbjct: 10 PETPLAQAMIQRCIQLARQALGRTTPNPLVGCVIVRNGEIVGEGFHPAAGQPHAEVFALS 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE A+GAT YV LEPC+HYGR+PPC + +I+ G+ +VVV + DPD RVSG+G++ L Sbjct: 70 EAGENAQGATVYVNLEPCNHYGRTPPCTEALIKAGVAKVVVGMVDPDPRVSGKGIERLRA 129 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V + ES + ++ R + +R LK A++ D I S ITG S+ Sbjct: 130 AGIEVVVGVEESACRQLNEGFIHRILYQRPLGILKYAMTLDGKIAATSGHSKWITGEKSR 189 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + VH LR+ DA++VG TV D+P LT +P+R+I+ L D+++ +T Sbjct: 190 SWVHQLRSACDAVIVGGNTVRQDNPNLTSHNPNAP--NPLRVIMSRTLDLPRDARVWQTD 247 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + ++ + L + + ++ + +++ L R ++ +L E G +A Sbjct: 248 DVPTLVFTEVGTEGDLYQHLVNQGVEVVVLNPLTPSRVMAYLYDRQLSRVLWECGGILAA 307 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYI 355 + I V I+ + + +IG G PSP+ + L V GSD +E Sbjct: 308 NAIADGAVQKILAFIAPKIIGGHGGPSPVGDLGLTLMTDALTLERVSWRQLGSDYVVEGY 367 Query: 356 GKN 358 N Sbjct: 368 IPN 370 >gi|257059130|ref|YP_003137018.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802] gi|256589296|gb|ACV00183.1| riboflavin biosynthesis protein RibD [Cyanothece sp. PCC 8802] Length = 360 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 186/359 (51%), Gaps = 8/359 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M FD + M L+ +R +G TS NP V +IV++G ++G G G PHAE+ AL Sbjct: 1 MNSPDFDQQMMQRCLQLARQALGQTSPNPLVGSVIVQNGEIVGEGFHPKAGEPHAEIFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GAT YV+LEPC+HYGR+PPC +I G+ +VVV + DP+ VSG+G++ L Sbjct: 61 RQAQERAKGATVYVSLEPCNHYGRTPPCTDALIAAGVSKVVVGMVDPNPLVSGKGVEKLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V + ES + A++ R + + LK A++ D I S ITG S Sbjct: 121 ESGIEVVVGVEESACRQLNEAFIHRILHHQPLGILKYAMTLDGKIAATTGHSAWITGTAS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +RA DA++VG T+ D+P LT + +P+R+++ L ++ + +T Sbjct: 181 RQLVHQVRAACDAVIVGGNTLRKDNPNLTTH--EVAGVNPLRVVMSKTLDLPSEANLWQT 238 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + ++I + L R + + +I ++ +L RG++S+L E G +A Sbjct: 239 DIAPTLVITERGRNSKLQAQLRDRGVEVIELASVTPSGVMQLLYERGLSSVLWECGGTLA 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 I ++ I+ + + +IG P P+ + LEK V D+ +E Sbjct: 299 AQAIADGVIQKIMAFIAPKIIGGTIAPCPIGDLGLEKMTQALALQRVTLQQIDGDILIE 357 >gi|295398347|ref|ZP_06808389.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC 11563] gi|294973486|gb|EFG49271.1| riboflavin biosynthesis protein RibD [Aerococcus viridans ATCC 11563] Length = 364 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 190/357 (53%), Gaps = 13/357 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +M AL + G T +NP V +IVK+ +IGRG G HAE +AL++A G + Sbjct: 4 YMQEALDLAELGQGWTRSNPMVGAVIVKNSQIIGRGYHQQYGGLHAEREALKDANEQGHD 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +GAT YVTLEPC H+G++PPC Q IIE GI +VVV DP+ V+G+G+Q L I + Sbjct: 64 VKGATMYVTLEPCCHFGKTPPCTQAIIEGGIEKVVVAAIDPNPLVAGKGIQELRNHHIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + + +R ++T+K A++ D S IT I++ VH Sbjct: 124 ETGLLAEESEDLNRKFNYFMTHQRPYVTMKYAMTLDGRTAAYTGDSQWITDKIAREHVHY 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ++ +I+VGIGTVLADDP LT R++ + +P+RI+ D KL L+S+++ TA P Sbjct: 184 QRHRNQSIMVGIGTVLADDPALTVRIDDFEGINPIRIVCDTSLKLPLNSQLVATAKETPT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T N +P A++ ++ + DL L+T L +G+ S+ VEGG+ + S Sbjct: 244 IIATINQNPEDHQAYQAAGCQLLVVKEKDNKVDLLDLITQLGQQGIQSIYVEGGSKLNAS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353 + + L+ I Y VIG SP+ + + + G D+ +E Sbjct: 304 LLEAGLIQEIHTYIGPKVIGGFDQYSPISGFGFPQMDQALTSNVQAITSLGKDLLIE 360 >gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198] gi|225202294|gb|EEG84648.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198] Length = 384 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 183/368 (49%), Gaps = 28/368 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + TS NP+V C+IVK+G ++G G + G PHAEV AL+ AG++ Sbjct: 17 DEHYMRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMAGDK 76 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI + Sbjct: 77 AKGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGIDV 136 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + + R +I LK+ S D +A S IT S+ V Sbjct: 137 SHGILMQEAEKLNVGFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQN 196 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQ+ AIL TVLAD+P + R + L + P+RI+ D +++ + Sbjct: 197 FRAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTENH 256 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVT 288 KI T + + L + + N++ I DL L+ L R + Sbjct: 257 KI--TQIEGECWLARTK----LQPSDWQGNVSEILLPTNGKNSGVDLVLLMMQLGKRNIN 310 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRD 344 ++ VE GA A + + + LVD +I+Y + ++G+ SPL F Sbjct: 311 TVWVESGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSLQ 370 Query: 345 YFGSDVCL 352 GSD+ + Sbjct: 371 QIGSDIRV 378 >gi|15900115|ref|NP_344719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae TIGR4] gi|14971645|gb|AAK74359.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae TIGR4] Length = 366 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + V G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKVFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Klebsiella pneumoniae NTUH-K2044] gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 367 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 20/365 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+R+++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ A + + + + + DL L+ +L + + S+ V Sbjct: 242 HRIVQQAGET---LFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 E GA +A + + + LVD +I+Y + ++G LEE +F G Sbjct: 299 EAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGP 358 Query: 349 DVCLE 353 DVCL Sbjct: 359 DVCLH 363 >gi|225028184|ref|ZP_03717376.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353] gi|224954496|gb|EEG35705.1| hypothetical protein EUBHAL_02456 [Eubacterium hallii DSM 3353] Length = 411 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 123/413 (29%), Positives = 188/413 (45%), Gaps = 63/413 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP + ++M A+ ++ G + NP V +IVKDG +IG G G HAE A+ Sbjct: 1 MP----EEKYMRRAIELAKKGSGHVNPNPLVGAVIVKDGEIIGEGYHECYGQLHAERNAI 56 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G G+T YVTLEPC HYG++PPC + IIE I RVVV DDP+ VSG+G + Sbjct: 57 ANARKRGNNIEGSTIYVTLEPCCHYGKTPPCTEAIIEEKIARVVVGSDDPNPLVSGKGFK 116 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L +KGI ++ ++ E H + ++ +K A++ D I S +TG Sbjct: 117 LLREKGIEVIPHFLKEECDAMNHVFFHYISTGTPYVAMKYAMTMDGKIACYTGDSKWVTG 176 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 S+ V LR I+ GIGTVLADDP L+CR+ G P+RII D H ++ +DS++ Sbjct: 177 EESRAHVQTLRNHYKGIMAGIGTVLADDPMLSCRIEG--GRDPVRIIADSHLRIPMDSQL 234 Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC----------------------- 272 ++TA P+I+ + D A+ +K + ++ Sbjct: 235 VRTAKQQPLIVACLPDADETKAVQLEEKGVEVLRIPGIAVNDFSGSSSDSVLKYKDRLLA 294 Query: 273 ------------------------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 L L+ L R + +L+EGG + S + + +V Sbjct: 295 DNLADNNISREVDSDIIEEKQKEVISLPVLMKELGSRKIDGILLEGGGQLNESALQAGIV 354 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + Y + + G +P+E L K +F + FG D+ LEY Sbjct: 355 QRVYCYIAPKIFGGAQAKTPVEGQGLAKAADAWHFTRIGMQEFGQDILLEYER 407 >gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3] gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3] Length = 367 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 183/365 (50%), Gaps = 20/365 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+R+++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ A + + + + + DL L+ +L + + S+ V Sbjct: 242 HRIVQQAGET---LFARLRADERQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 E GA +A + + + LVD +I+Y + ++G LEE +F G Sbjct: 299 EAGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELNQAPHFKFNEIRQVGP 358 Query: 349 DVCLE 353 DVCL Sbjct: 359 DVCLH 363 >gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b] gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b] Length = 370 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 181/367 (49%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 2 IDERYMARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M + + +L R I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLAD+P LT R N L + P+R+++D +++ Sbjct: 182 RFRAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQ 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++I ++ + D V + + + DL ++ +L R + S+ VE Sbjct: 242 HRLIDQPGE-TWLMRSAPDQHVWPESVTQIAVPQRESQ-LDLVAMMMLLGQRQINSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 GA +A + + + LVD +I+Y + ++G LE G D Sbjct: 300 AGAKLAGALLQAGLVDELIVYLAPKLLGNAARGLCELPGLEHLAAAPALNFSDVRRVGGD 359 Query: 350 VCLEYIG 356 + L Sbjct: 360 LRLTLTP 366 >gi|282896327|ref|ZP_06304349.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9] gi|281198823|gb|EFA73702.1| Riboflavin biosynthesis protein RibD [Raphidiopsis brookii D9] Length = 376 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 109/355 (30%), Positives = 177/355 (49%), Gaps = 8/355 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 FDA M L+ +R +G TS NP V ++VKDG ++G G G PH EV AL AG Sbjct: 15 EFDALMMQRCLQLARLALGRTSPNPLVGAVVVKDGEIVGEGFHPRAGEPHGEVFALRAAG 74 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YV+LEPC+HYGR+PPC+ +I G+ +VVV + DP+ V+G G+ L GI Sbjct: 75 ERARGATIYVSLEPCNHYGRTPPCSLSLINAGVAKVVVGMVDPNPLVAGAGIARLRAAGI 134 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ + E + ++ R + ++ LK A++ D I S IT ++++V Sbjct: 135 EVIVGVEEEACQKLNEGFVYRILHQKPLGILKYAMTLDGKIASNSGHSTWITNNQARSEV 194 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LRA DA++VG TV D+P+LT ++P+R+++ L ++ + T + Sbjct: 195 HQLRAACDAVIVGGNTVRRDNPQLTTHQQA--GYNPLRVVMSASLNLPENAHLWDTGVAP 252 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++ E P +K + ++ ++ L RG ++L E G +A I Sbjct: 253 TLVLTQEGSSPNFQQMLLQKGVEVLELPLLTPGLVMAHLYERGFCTVLWECGGTLAARAI 312 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 V ++ + + +IG P+P+ + L V G D +E Sbjct: 313 AENAVQKVLAFIAPKIIGGIYAPTPVGDLGLNSMTESLVLERVNWRTVGCDCLVE 367 >gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 367 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 183/364 (50%), Gaps = 18/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+R+++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ A + D + + + DL L+ +L + + S+ VE Sbjct: 242 HRIVQQAGE--TLFARLRADARQWPESARTLLVPEHNGHLDLVLLMMLLGKQQINSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 GA +A + + + LVD +I+Y + ++G LEE +F G D Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPD 359 Query: 350 VCLE 353 VCL Sbjct: 360 VCLH 363 >gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Serratia symbiotica str. Tucson] gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Serratia symbiotica str. Tucson] Length = 371 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 188/367 (51%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A + +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DVFYMARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+AVS D MA S IT ++ V Sbjct: 124 CHGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L P RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPALTVRWDELDAETQSLYPQENLRQPWRIILDSQNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++++ + D ++ I + DL ++ L R V S+ VE Sbjct: 244 RVVQQPGA--TWLARLQPDKQAWPQDVEQLIFPAHGGGVDLVVMMMHLAKRQVNSIWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA ++ + + + LVD ++LY + ++G+ G LE+ F+ G D+ Sbjct: 302 GAQLSGALLQAVLVDELVLYLAPKLLGDDGRGLCHLPGLEQLADAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLRAK 368 >gi|256027507|ref|ZP_05441341.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. D11] gi|289765470|ref|ZP_06524848.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D11] gi|289717025|gb|EFD81037.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D11] Length = 370 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 201/365 (55%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH G++PPCA+ IIE GI++ VV DP+ V+G+G++ + GI Sbjct: 64 ENAKGATIYVTLEPCSHQGKTPPCAKRIIEAGIKKCVVACIDPNPLVAGKGIKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 124 EVKLGILEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295 IIVT ND+ L KN+ I+ + + +K +L L G+ S+L+EGG Sbjct: 244 N-DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLGIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++D+ ++ + +IG+ P G+ N V + + +G + Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNSKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|228934673|ref|ZP_04097506.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824925|gb|EEM70724.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 360 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 120/352 (34%), Positives = 187/352 (53%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG Sbjct: 1 MKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + K + + KR +T+K V+ D I + S IT ++ +VH +R + Sbjct: 121 CEEKSKKMNEVFNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHKIRNE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG TV D+P LT R+ +P+R+ILD ++ +++ ++ I T Sbjct: 181 NAAILVGANTVQKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDGEAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 N + + +L ++L +L +GV+SLL+EGG V SFI + Sbjct: 239 SNHAAEKRKVLESAGVKVFVTSGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENE 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L+D +ILY + +IG PS +E + K + D+ +GK+ Sbjct: 299 LMDKLILYFAPKIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 346 >gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia intermedia ATCC 29909] gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia intermedia ATCC 29909] Length = 369 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 182/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G +PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M ++ + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R + L P+RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ + L + D ++ + + DL L+ L R + S+ VE Sbjct: 244 QVTQQNGL--CWLARVEADQQPWPDNVEQLLLPRHGGGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F+ G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFVFSDVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|238927494|ref|ZP_04659254.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas flueggei ATCC 43531] gi|238884776|gb|EEQ48414.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Selenomonas flueggei ATCC 43531] Length = 386 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 141/364 (38%), Positives = 199/364 (54%), Gaps = 7/364 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL Sbjct: 20 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 79 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L Sbjct: 80 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 139 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V + +E + A+LT KR +TLK A++ D I S ITG ++ Sbjct: 140 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 199 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++ Sbjct: 200 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 259 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 VI V+E D R ++ + +L ++L L R TSLLVEGGAAV Sbjct: 260 APTVIAVSERADQRRVDRLRACGAEVVTLGAERVELPRVLDWLGARDCTSLLVEGGAAVN 319 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 SF+ VD I + + +++G G P+P+ + + D+ +E +G +L Sbjct: 320 WSFLAGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLY----DMHVEQVGADL 375 Query: 360 CLQE 363 + Sbjct: 376 LVTG 379 >gi|291534448|emb|CBL07560.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Roseburia intestinalis M50/1] Length = 366 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 185/358 (51%), Gaps = 15/358 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G Sbjct: 4 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI Sbjct: 64 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +++ E + + K ++ +K A++ D I A S ITG ++ QV Sbjct: 124 LVTEGVLQEECEYQNRVFFHYIQTKLPYVRMKYAMTLDGKIASASGKSQWITGEAAREQV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+I++TA Sbjct: 184 HRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSRIVQTAEEQ 241 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 II T D ++K II + DLK+L+ L G+ S+L+EGGA + Sbjct: 242 NTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVLLEGGAMLN 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 S + + +V+ + Y + + G SP+ ++ + R G D+ + Sbjct: 302 WSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLVSQRVQQVGEDILI 359 >gi|194016547|ref|ZP_03055161.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] gi|194012020|gb|EDW21588.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] Length = 356 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 190/357 (53%), Gaps = 10/357 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ +L +R G TS NP V +IV+D ++G G G PHAE+ AL+ AG++A+GA Sbjct: 1 MNLSLENARAMKGQTSPNPLVGAVIVRDNEIVGVGAHMKAGEPHAEIHALKMAGDKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+GR+ PCA+ +++ G+ VVV DP+ V+GRG+ L GI ++ + Sbjct: 61 TIYVTLEPCSHHGRTGPCAEALVKAGVETVVVAALDPNPLVAGRGIAILQDAGIQVITGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + + +K +TLK ++ D I A S IT S+ H +R+ Sbjct: 121 LEQESILMNEVFNHFITKKTPFVTLKAGITLDGKIASATSDSKWITSETSRYDAHHIRSI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +DAILVG TV+ DDP LT R+ H P+RI+LD L +KI+ + I T Sbjct: 181 NDAILVGAQTVIHDDPSLTARIP--NGHHPIRIVLDSRLSTPLTAKIVTDQMAPTWIFTT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + D A +++ D L+++L +L R V+SL++EGG + SF+ + Sbjct: 239 KQADEEKRAALEAAGVSVFVTDSETRVPLQEVLQMLGERNVSSLMIEGGGQINASFLEQQ 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 LVD +++Y + +IG PS + + D +E +GK++ + Sbjct: 299 LVDKLVIYMAPKLIGGRLSPSFFGGEGIRLMSDAIELDQL----SVETLGKDIKITG 351 >gi|254410513|ref|ZP_05024292.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes PCC 7420] gi|196182719|gb|EDX77704.1| riboflavin biosynthesis protein RibD [Microcoleus chthonoplastes PCC 7420] Length = 380 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 185/357 (51%), Gaps = 8/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + FD M + +R +G TS NP V +IV+DG ++G G G PHAE+ AL + Sbjct: 22 WTPFDRTMMQRCIELARRALGRTSPNPLVGAVIVRDGAMVGEGFHPGAGQPHAEIFALRQ 81 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++++GAT YV LEPC+HYGR+PPC + +I G+ +VVV + DP+ V+G G++ L + Sbjct: 82 AGDKSQGATIYVNLEPCNHYGRTPPCTEALIAAGVAKVVVGMVDPNPLVAGGGIERLKKA 141 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V +E+E A++ R + KR LK A++ D I A S +TG ++ Sbjct: 142 GIEVVVGVETEACRQLNEAFIHRILHKRPWGMLKYAMTLDGKIATASGHSAWVTGQEARR 201 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR DA++VG TV D+P LT H+P+R+++ L +D+++ +TA Sbjct: 202 YVHQLRTACDAVIVGGNTVRLDNPHLTSH--DTDTHNPLRVVMSRTLDLPIDARLWETAD 259 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +++ +P L K + +I K + L R ++++L E G +A Sbjct: 260 APTLVLTEIGANPDLQHQLVNKGVEVIEMTPLTPAKAMAYLYDRQLSTVLWECGGTLAAR 319 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I V ++ + + ++G PSP+ + L + V GSD +E Sbjct: 320 AIADGTVQKVLAFIAPKIVGGITAPSPVGDLGLARMTDALTLEQVSWRQLGSDYVVE 376 >gi|148987916|ref|ZP_01819379.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP6-BS73] gi|147926380|gb|EDK77453.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP6-BS73] Length = 366 Score = 363 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1] gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1] Length = 365 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 180/362 (49%), Gaps = 14/362 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D FM ALR + GLT NP+V +IVKDG +IG+G G PHAE +A+ +A Sbjct: 6 DEIFMKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKK 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G G+T YVTLEPC HYGR+PPC + II+ I+RVV+ DP+ +VSG+G++ L + G Sbjct: 66 GFNLEGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHG 125 Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +++ E + + EKR I LKIA S D I S IT S+ Sbjct: 126 IETVVGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRY 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR +S AI+VG TVL D+P LT R E P+R++LD K+ D + Sbjct: 186 VHKLRRESTAIMVGTNTVLKDNPNLTVRYTE-TERQPLRVVLDKDLKIPEDYNVFNNE-A 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 V+ ++ D K + I+ + DL +L L V L +EGG + Sbjct: 244 KTVLFTSDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDL 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 F+ +L D I ++ + +IGE GI S + G N FG D+ L+ Sbjct: 304 ITQFLKEKLFDRISVFIAPKIIGEDGISSFGKLGIDTVDKSINLHLEDIKRFGDDILLQL 363 Query: 355 IG 356 Sbjct: 364 RP 365 >gi|83311440|ref|YP_421704.1| riboflavin biosynthesis protein ribD [Magnetospirillum magneticum AMB-1] gi|82946281|dbj|BAE51145.1| Riboflavin biosynthesis protein ribD [Magnetospirillum magneticum AMB-1] Length = 375 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 142/363 (39%), Positives = 206/363 (56%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D M AAL +R +G NP+V C+IVKDG V+GRG T GG PHAE +AL AG Sbjct: 12 EIDLGHMRAALALARRGLGTVWPNPAVGCVIVKDGRVVGRGWTQPGGRPHAETEALAMAG 71 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GAT YVTLEPC+H+G++ PCA ++ G+ RVVV V DPD RV+G+G+ L GI Sbjct: 72 SAALGATVYVTLEPCAHHGKTAPCADALVAAGVSRVVVAVQDPDSRVAGKGVDRLRVAGI 131 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ +E + R R +TLK+A + D I S ITG +++ Sbjct: 132 PVTEGVLHAEAAELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGDQARSAA 191 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRA++DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA Sbjct: 192 HLLRAETDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVATANDV 251 Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 P ++T D V A+ ++++ DL+ L L GVT +LVEGGA Sbjct: 252 PTWLLTLEDCDVNRREAYEDAGVDVVEVSPGADGAIDLELALQALGESGVTRVLVEGGAH 311 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLE 353 ++ + + + LVD ++ +R+ ++G G+P+ + G +F V G DV Sbjct: 312 LSAALLRAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRPVGDDVMET 371 Query: 354 YIG 356 YI Sbjct: 372 YIR 374 >gi|304437387|ref|ZP_07397346.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369643|gb|EFM23309.1| riboflavin biosynthesis protein RibD [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 367 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 142/364 (39%), Positives = 200/364 (54%), Gaps = 7/364 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M AL + + G TS NP V LIV+DGIV G G PHAE+ AL Sbjct: 1 MNETDESYMREALHLAEFARGRTSPNPLVGALIVRDGIVAASGWHRAAGEPHAEIHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H GR+ PCA+ +I GI RVVV + DP+ V+GRG+ L Sbjct: 61 AGELARGATLYVTLEPCAHQGRTGPCAKAVIAAGITRVVVALRDPNPLVAGRGIAMLEAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V + +E + A+LT KR +TLK A++ D I S ITG ++ Sbjct: 121 GIEVVTGVCAAEARRQNAAFLTWVTTKRPLVTLKTAMTLDGKIASHTGASRWITGEEARL 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH +R SDAILVGIGTVLADDP LT RL +P+R++LD + D++++ Sbjct: 181 RVHEMRDASDAILVGIGTVLADDPSLTTRLPHRAGKNPLRVVLDSAARTPHDARLVTDGA 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 VI V+E DP R ++ + +L +LL L TSLLVEGGAAV Sbjct: 241 APTVIAVSERADPQRVDRLRACGAEVVTLGAERVELPRLLDWLGAHDCTSLLVEGGAAVN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 SF++ VD I + + +++G G P+P+ + + D+ +E +G +L Sbjct: 301 WSFLSGGYVDRICAFIAPMLMGGGEAPTPVGGVGFDAPQEALHLH----DMHVEQVGADL 356 Query: 360 CLQE 363 + Sbjct: 357 LVTG 360 >gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida str. Pm70] gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70] Length = 376 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 195/373 (52%), Gaps = 19/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D +M AL + T+ NPSV C++VKDGI++GRG G HAEV AL Sbjct: 2 MTFTAQDVVYMQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARGATAYVTLEPCSH+GR+PPCAQ +I+ G+ +VV + DP+ +V+GRGL LS Sbjct: 62 REAGENARGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLS 121 Query: 121 QKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +E + +L R R ++ LK+A+S D MA S ITG ++ Sbjct: 122 DAGIESAVGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA++ AIL TVLADDP L R L + P+R+ILD Sbjct: 182 RADVQAERAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQH 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ ++ +L +PV +V++ +L + I + L L+ L R + Sbjct: 242 RVQPSHRLF--SLSSPVWLVSQTARSLLEFPAHCEQIQ-LSASTNALADLMAELGQRQIN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRD 344 +L +E GA +A + I ++LVD +I+Y + ++G+ P L + + Sbjct: 299 TLWIEAGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIE 358 Query: 345 YFGSDVCLEYIGK 357 G D+ Y + Sbjct: 359 KLGDDLKTIYHPR 371 >gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With A Substrate Analogue, Ribose 5-Phosphate (Beta Form), Bound To The Active Site Of The Reductase Domain gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In Complex With A Substrate Analogue, Ribose 5-Phosphate (Beta Form), Bound To The Active Site Of The Reductase Domain Length = 402 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 29 QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 88 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q GI Sbjct: 89 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 148 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + SE + +L R +I LK+ S D A S IT ++ V Sbjct: 149 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 208 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 209 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 268 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L L + + S+ VE Sbjct: 269 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVE 326 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 327 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 386 Query: 350 VCLEYIG 356 VCL +G Sbjct: 387 VCLHLVG 393 >gi|183603379|ref|ZP_02714555.2| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae SP195] gi|183571310|gb|EDT91838.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae SP195] Length = 384 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 21 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 81 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 140 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ V Sbjct: 141 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 201 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 258 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 259 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 318 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 319 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 377 Query: 357 KNLCLQE 363 C QE Sbjct: 378 IYPCSQE 384 >gi|148992759|ref|ZP_01822402.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|147928485|gb|EDK79500.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP9-BS68] gi|332075850|gb|EGI86317.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA17570] Length = 366 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ V Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVQQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|56751317|ref|YP_172018.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC 6301] gi|56686276|dbj|BAD79498.1| riboflavin biosynthesis protein RibD [Synechococcus elongatus PCC 6301] Length = 368 Score = 362 bits (930), Expect = 4e-98, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 191/367 (52%), Gaps = 8/367 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL + Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVTGGGIARLQQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ + A++ R ++R LK A++ D I + S ++ S+ Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH LR+Q DA++VG TV D+P LTC + + P+R+++ L L++ + +T + Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTCH--DISDRHPLRVVMSRRLDLPLEANLWQTDI 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ E D + + ++ ++ L RG+++LL E G +A + Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356 + L+ ++ + + +IG SP+ + L + ++ + G D+C Sbjct: 299 ALREGLIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358 Query: 357 KNLCLQE 363 + QE Sbjct: 359 DLVSGQE 365 >gi|225860210|ref|YP_002741719.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Taiwan19F-14] gi|298230114|ref|ZP_06963795.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255023|ref|ZP_06978609.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501980|ref|YP_003723920.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|225726901|gb|ACO22752.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Taiwan19F-14] gi|298237575|gb|ADI68706.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Streptococcus pneumoniae TCH8431/19A] gi|327390586|gb|EGE88926.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA04375] Length = 366 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 115/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTIDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|77410804|ref|ZP_00787162.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae CJB111] gi|77163183|gb|EAO74136.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae CJB111] Length = 369 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ K+ + LK A++ D I S I+ S+ V L Sbjct: 125 VGILREECDALNERFIFYMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 + + +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358 >gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22] gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55] gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22] gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55] Length = 367 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 183/364 (50%), Gaps = 18/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARALKLAARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+R+++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ A + D + + Y DL L+ +L + V S+ VE Sbjct: 242 HRIVQQAGE--TLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 GA +A + + + LVD +I+Y + ++G LEE +F G D Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359 Query: 350 VCLE 353 VCL Sbjct: 360 VCLH 363 >gi|332202099|gb|EGJ16168.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA41317] Length = 366 Score = 362 bits (929), Expect = 5e-98, Method: Composition-based stats. Identities = 115/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A++ D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMTMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|194397666|ref|YP_002036884.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54] gi|194357333|gb|ACF55781.1| riboflavin biosynthesis protein [Streptococcus pneumoniae G54] Length = 366 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G HAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGSHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB] gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB] Length = 366 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 179/368 (48%), Gaps = 18/368 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL +R T NP+V C+IV+DG V G G G PHAEV AL AGE Sbjct: 1 MDELYMARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 61 KARGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIA 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M E + +L R I LK+ S D MA S IT ++ V Sbjct: 121 VSHGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 181 RLRAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQ 240 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++I ++ D A + + DL ++ +L + + S+ VE Sbjct: 241 HRLISQPGE--TWLMRHQPDQQHWPAEVTQIAVPLREQQLDLVAMMMLLGQKQINSVWVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 GA++A + + + LVD +I+Y + ++G G L F G D Sbjct: 299 AGASLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLRSLADAPAFRFSDVRQVGDD 358 Query: 350 VCLEYIGK 357 + L + Sbjct: 359 LRLTLTPQ 366 >gi|319898992|ref|YP_004159085.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73] gi|319402956|emb|CBI76507.1| Riboflavin biosynthesis protein ribD [Bartonella clarridgeiae 73] Length = 374 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 155/374 (41%), Positives = 227/374 (60%), Gaps = 12/374 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + H+ LT NPSV LIVK+ ++G GVTA G PHAE Sbjct: 1 MSREAQDKRFMAAAIRLAERHINLTGKNPSVGALIVKNNETDASIVGYGVTAVQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAY+TLEPCSHYG++PPC +I+ GI RVV+ + DPD RV GRG+ Sbjct: 61 VQALLMAGPLAYGATAYITLEPCSHYGKTPPCVNALIDAGIARVVIALPDPDQRVYGRGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN +G G ++ I+ Sbjct: 121 ALLRSAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGVGKKGQSNLKIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS +Q H+LRAQ+D I+VGIGT+LADDP+L CRL GL+ SP+R+ILD + ++ LD+K Sbjct: 181 GEISHSQTHILRAQNDVIMVGIGTILADDPKLDCRLPGLEMRSPIRVILDKNLRIPLDAK 240 Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +++TA P ++ +A + + + + + +L +L R + S Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVTVCSVEANNNLIPPLAILRLLYQRKINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+N+ VD +I + + I++G+ I +P E YL + F + G+D Sbjct: 301 VLLEGGAKTGEIFLNASCVDRLICFYAPIILGKDRIEAPHFESYLSE-FNKIEMRMLGND 359 Query: 350 VCLEYIGKNLCLQE 363 ++ K LC Q Sbjct: 360 RLYKWRRKILCSQG 373 >gi|322807186|emb|CBZ04760.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Clostridium botulinum H04402 065] Length = 365 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE A+ Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGERAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGIGT++ D+P L R+ + SP II+D ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 T +P A ++ + + L +L+ L GV S+L+EGG+ + Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361 >gi|119509555|ref|ZP_01628702.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414] gi|119465744|gb|EAW46634.1| Riboflavin biosynthesis protein RibD [Nodularia spumigena CCY9414] Length = 448 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 119/364 (32%), Positives = 179/364 (49%), Gaps = 16/364 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S FD M L +R +G TS NP V ++VKDG ++G G G PHAEV AL+ A Sbjct: 79 SDFDQAMMQRCLALARRALGRTSPNPLVGAVVVKDGEIVGEGFHPCAGEPHAEVFALKAA 138 Query: 64 G--------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 G A GAT YV LEPC+H+GR+PPC++ +I G+ +VVV + DP+ V G G Sbjct: 139 GVGADSTQENRACGATVYVNLEPCNHHGRTPPCSEALIAAGVAKVVVGIVDPNPLVGGGG 198 Query: 116 LQWLSQKGIIVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L G+ V +E++ A++ R V KR LK A++ D I S + Sbjct: 199 IARLRAAGVEVVVGVEAQACYQLNEAFIHRIVHKRPLGILKYAMTLDGKIATTSGHSAWV 258 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T ++++VH LRA DAI+VG TV D+P LT G H+P+R+++ L D+ Sbjct: 259 TNQDARSEVHQLRAGCDAIIVGGNTVRKDNPYLTSHQVGA--HNPLRVVMSRQLNLPEDA 316 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ TA V+ E P R++ + ++ + ++T L RG S+L E Sbjct: 317 RLWDTAEAPTVVFTEEGSSPDFQSFLRQQGVEVVELTSLTPELVMTNLYDRGFCSVLWEC 376 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSD 349 G +A S I V I+ + + +IG +P+ + V GSD Sbjct: 377 GGTLAASAIAQGAVQKILAFIAPKIIGGSHAATPVGDLGFTIMTEALTLERVSWRVVGSD 436 Query: 350 VCLE 353 +E Sbjct: 437 CLVE 440 >gi|301064689|ref|ZP_07205078.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2] gi|300441231|gb|EFK05607.1| riboflavin biosynthesis protein RibD [delta proteobacterium NaphS2] Length = 369 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 127/362 (35%), Positives = 193/362 (53%), Gaps = 12/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM A++ +R +G TS NP+V +IVK+G V+ G G PHAEV+A + Sbjct: 1 MEKNDTHFMKLAVKEARKGLGRTSPNPAVGAVIVKEGRVVASGFHKQAGMPHAEVEAFRK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G A GAT YVTLEPC+H+G++PPC + I++ G++RVVV + DP+ V+G G +L +K Sbjct: 61 VGNRAPGATLYVTLEPCNHHGKTPPCTELILKSGVKRVVVGMRDPNPLVTGGGCDYLEKK 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V ++E E A+ R + K A++ D + S IT S++ Sbjct: 121 GLEVVTGILEDECIRLNEAFTKFITTGRPFVIAKSAITLDGWTATSAHHSQWITNEKSRH 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR + DA+L+GIGTVLADDP +T RL + P RI++D +F+ +K++K Sbjct: 181 FVHRLRDRVDAVLMGIGTVLADDPAMTARLGAKKGKDPTRIVVDTNFRTPAGAKVMKHDS 240 Query: 242 LAPVIIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 AP II T E + K + + C D DL L+ L +TS+LVEGG Sbjct: 241 TAPTIIATSVEGNRSRPDRGKHPKGVETLVCPKQGDKLDLNWLMDKLGEMSITSILVEGG 300 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEG----YLEKNFMCVRRDYFGSDV 350 + + + I ++L+D ++ + ++G G GIP G FG DV Sbjct: 301 SMILGAMIRAQLIDKFYVFIAPKILGGGDGIPMAAGAGPKTMDDSLGLKDTSVRRFGDDV 360 Query: 351 CL 352 + Sbjct: 361 LI 362 >gi|19704838|ref|NP_602333.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296327621|ref|ZP_06870165.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19712714|gb|AAL93632.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296155267|gb|EFG96040.1| riboflavin biosynthesis protein RibD [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 369 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAG Sbjct: 4 NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI Sbjct: 64 ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++E E K + K ++ LK ++ D I S IT I++ +V Sbjct: 124 EVELGVLEKEAKEINKIFFKYIENKIPYLFLKCGITLDGKIATRNGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + ++ K + Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEGKFLNF 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 IIVT ND+ L + KN+ I+ ++ +L L G+ S+L+EGG Sbjct: 244 N-DGKAIIVTSNDNKGLEKLEKYKNLGTIFIFLEGKIFKIQDILKELGKLGIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + +VD+ ++ + +IG+ P G+ + V + + +G + Sbjct: 303 SGLISTAFKENIVDAGEIFIAPKIIGDSSA-IPFINGFNFDSMEDVFKLPNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|22536910|ref|NP_687761.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 2603V/R] gi|76788660|ref|YP_329494.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae A909] gi|77406006|ref|ZP_00783084.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae H36B] gi|22533761|gb|AAM99633.1|AE014225_16 riboflavin biosynthesis protein RibD [Streptococcus agalactiae 2603V/R] gi|76563717|gb|ABA46301.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae A909] gi|77175401|gb|EAO78192.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae H36B] Length = 369 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ K+ + LK A++ D I S I+ S+ V L Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 + + +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358 >gi|325289915|ref|YP_004266096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobotulus glycolicus DSM 8271] gi|324965316|gb|ADY56095.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobotulus glycolicus DSM 8271] Length = 398 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 180/361 (49%), Gaps = 14/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +M AL + G TS NP V CLIVKDG++IG G G PHAEV AL Sbjct: 35 FSDQDKFYMQRALDLAEMAEGRTSPNPMVGCLIVKDGLIIGEGYHQKAGTPHAEVHALTA 94 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GA YVTLEPCSH+GR+PPC +I+ G++RV V + DP+ V G+G+Q + Sbjct: 95 AGKRASGADVYVTLEPCSHFGRTPPCCDALIQAGVKRVFVALVDPNPLVRGKGIQKMRAA 154 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E ++ + K A + D S IT +S+ Sbjct: 155 GIEVFTGLLENEAAKLNEPFVKAMKTNLPFVLYKSASTADGKTASCTGDSRWITNDLSRK 214 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR D I+VG T+L D+P+LTCR+ G P+R+I+D + +++++ + Sbjct: 215 YVHELRNSYDVIMVGSKTILQDNPQLTCRIAG--GRHPVRLIVDGTLSIPEEARLLSLSE 272 Query: 242 LAPVIIVTENDDPVLALAFRKK--NINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGA 296 + +I T P +K NI + LK L+ ++ +G S+L+EGG Sbjct: 273 GSTIIATTRAASPKKIDKLKKIRNNIEVWVYSEERYVPLKTLMQDILEKGYQSVLLEGGG 332 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351 +A I +LVD + L+ + +IG+ SP+ + F D+ Sbjct: 333 TLAGQMIAEKLVDKVNLFIAPKIIGQSSF-SPISGFCINSMADAVMIREMEMKEFAGDIL 391 Query: 352 L 352 L Sbjct: 392 L 392 >gi|167746303|ref|ZP_02418430.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662] gi|167654296|gb|EDR98425.1| hypothetical protein ANACAC_01012 [Anaerostipes caccae DSM 14662] Length = 354 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 117/354 (33%), Positives = 184/354 (51%), Gaps = 13/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ ++ G T+ NP V +IVKDG VIG G G HAE AL+ E+ +GA Sbjct: 1 MRRAIELAQKGTGHTNPNPLVGAVIVKDGQVIGEGFHEAYGGLHAERNALKSCTEDPKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC HYG++PPC + +I+ GIR+V V DP+ +V+G G++ L + GI + + Sbjct: 61 ELYVTLEPCCHYGKTPPCTEAVIKSGIRKVYVGNVDPNPKVAGMGIKILREHGIKVETGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + + ++ LK A++ D I + S ITG ++ V LR + Sbjct: 121 LDEECRELNDIFFYYITHDTPYVALKYAMTLDGKIAVKTGESKWITGGEAREHVQFLRHR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AIL GI TV+ DDP L R+ G ++P+R+I D ++ + SKI+++A + P II Sbjct: 181 YAAILTGIHTVIGDDPMLNARIEG--GNNPVRVICDSRLRIPISSKIVQSAKVIPTIIAA 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + A ++ C + DL +L+ IL + S+LVEGGA + S I + Sbjct: 239 CERN-EKAQRLEALGCRVLICPGKDGKTDLLELMRILRKEKIDSVLVEGGADINDSVIQA 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354 V+ + + + + G SP+E ++K + FG D+ LEY Sbjct: 298 GAVNKVYAFIAPKIFGGRQARSPVEGEGVDKISDALLLNGPEITRFGEDLLLEY 351 >gi|260495221|ref|ZP_05815349.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33] gi|260197278|gb|EEW94797.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_33] Length = 369 Score = 361 bits (928), Expect = 7e-98, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 200/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 64 ENAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 124 EVKLGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNF 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295 II+T ND+ L KN+ I+ + + +K +L L + S+L+EGG Sbjct: 244 N-DGKAIIITSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++D+ ++ + +IG+ P G+ N V + + +G + Sbjct: 303 SGLISTAFKENIIDAAEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cronobacter sakazakii ATCC BAA-894] gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894] Length = 367 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 178/363 (49%), Gaps = 18/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP V C+IVK+G+++G G G PHAEV AL AG++ Sbjct: 3 DEFYMARALKLAGQGRFTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP +T R + L E P+RI+LD +++ Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 KI+ + D + ++ ++ DL L+ L R V SL VE Sbjct: 243 KIVNQPGE--TWLARACPDDTVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + LVD +I+Y + ++G LE G D+ Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQIGPDL 360 Query: 351 CLE 353 L Sbjct: 361 RLR 363 >gi|225620931|ref|YP_002722189.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae WA1] gi|225215751|gb|ACN84485.1| riboflavin biosynthesis protein RibD [Brachyspira hyodysenteriae WA1] Length = 360 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 124/361 (34%), Positives = 181/361 (50%), Gaps = 16/361 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M A+ ++ G TS NP V +IVKDG VIG G G HAE+ A +A GE Sbjct: 1 MKMAIEEAKKGEGFTSPNPLVGAVIVKDGKVIGIGYHKKCGENHAEINAFLDAKEKGENV 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 A YVTLEPCSHYG++PPCA II+ ++RV++ D + +V+G G++ L GI ++ Sbjct: 61 EDADIYVTLEPCSHYGKTPPCADAIIKNKLKRVIIGCVDSNPKVAGNGIKKLKDAGIEVI 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + + KR I +K A++ D I S IT ++ H Sbjct: 121 VNVLEEECRKLNEVFFYYIANKRPFIVMKYAMTIDGKIATVSGKSKWITSEKTREHSHRF 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TV+ D+P L CRL +P+RIILD K+ LDS I KTA Sbjct: 181 RNKYSAIMVGINTVIEDNPTLNCRLP--NTRNPIRIILDSSLKMGLDSNICKTAKEIKTF 238 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILV-GRGVTSLLVEGGAAVAHS 301 I T +DD I II + + LK L+ IL + + S+ VEGGAA+ S Sbjct: 239 IATISDDDKKIKELENVGIEIIKTENDNGKVSLKDLMRILGEEKDIDSVYVEGGAALHAS 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356 + +LV+ ++Y + + G P+ +++ V+ D+ LEY Sbjct: 299 LLKEKLVNKALIYIAPKIFGGFEAKGPIGGEWIDDPNDAVKLVEGSITKIEDDLFLEYYL 358 Query: 357 K 357 K Sbjct: 359 K 359 >gi|313898762|ref|ZP_07832296.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2] gi|319935115|ref|ZP_08009555.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1] gi|312956344|gb|EFR37978.1| riboflavin biosynthesis protein RibD [Clostridium sp. HGF2] gi|319809940|gb|EFW06323.1| riboflavin biosynthesis protein RibD [Coprobacillus sp. 29_1] Length = 366 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 185/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + + + ++ +K A++ D I S I+G ++ QVH Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VG+ TV+ DDP LTCRL +P+RI+ D + + SKIIKTA Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T + D +RK IIY + DL L+ L + SLL+EGG+A+ S Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356 + ++VD + +Y + + G SP+ + G+D +E Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359 Query: 357 KNLCLQE 363 CLQE Sbjct: 360 IYPCLQE 366 >gi|291086763|ref|ZP_06344381.2| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1] gi|291076874|gb|EFE14238.1| riboflavin biosynthesis protein RibD [Clostridium sp. M62/1] Length = 383 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 185/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 20 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 79 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 80 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 139 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + + + ++ +K A++ D I S I+G ++ QVH Sbjct: 140 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 199 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VG+ TV+ DDP LTCRL +P+RI+ D + + SKIIKTA Sbjct: 200 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 257 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T + D +RK IIY + DL L+ L + SLL+EGG+A+ S Sbjct: 258 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGSAMNWS 317 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356 + ++VD + +Y + + G SP+ + G+D +E Sbjct: 318 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 376 Query: 357 KNLCLQE 363 CLQE Sbjct: 377 IYPCLQE 383 >gi|301799334|emb|CBW31869.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Streptococcus pneumoniae OXC141] Length = 366 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 188/367 (51%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|206578559|ref|YP_002240118.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342] gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342] Length = 367 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 183/364 (50%), Gaps = 18/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ + T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARALKLATRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M +E + +L R + LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMNEAEALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+R+++D +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ A + D + + Y DL L+ +L + V S+ VE Sbjct: 242 HRIVQQAGE--TLFARLRADERQWPESVRTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 GA +A + + + LVD +I+Y + ++G LEE +F G D Sbjct: 300 AGATLAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPD 359 Query: 350 VCLE 353 VCL Sbjct: 360 VCLH 363 >gi|149005931|ref|ZP_01829660.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP18-BS74] gi|168483819|ref|ZP_02708771.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1873-00] gi|225855949|ref|YP_002737460.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae P1031] gi|307126404|ref|YP_003878435.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 670-6B] gi|147762287|gb|EDK69248.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP18-BS74] gi|172042835|gb|EDT50881.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC1873-00] gi|225725798|gb|ACO21650.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae P1031] gi|306483466|gb|ADM90335.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 670-6B] gi|332076629|gb|EGI87091.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA17545] gi|332203340|gb|EGJ17407.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae GA47368] Length = 366 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|225858039|ref|YP_002739549.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 70585] gi|225721875|gb|ACO17729.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae 70585] Length = 366 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHHVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIASKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|168493876|ref|ZP_02718019.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC3059-06] gi|169833009|ref|YP_001693699.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Hungary19A-6] gi|168995511|gb|ACA36123.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae Hungary19A-6] gi|183576084|gb|EDT96612.1| riboflavin biosynthesis protein RibD [Streptococcus pneumoniae CDC3059-06] Length = 366 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+++M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + Sbjct: 3 DSKYMKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + Sbjct: 63 PVGATLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ + ++ +K A+S D I S IT ++ VH Sbjct: 123 TVGILENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA Sbjct: 183 LRHYVSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T ++D ++ I+ + DL L+ L + SL++EGG+ + S Sbjct: 241 YIATSSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 + ++VD + +Y + + G P+ + +R G+D +E Sbjct: 301 ALEQQIVDELKIYIAPKIFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEV 359 Query: 357 KNLCLQE 363 C QE Sbjct: 360 IYPCSQE 366 >gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea ATCC 19718] gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea ATCC 19718] Length = 363 Score = 361 bits (927), Expect = 9e-98, Method: Composition-based stats. Identities = 118/359 (32%), Positives = 182/359 (50%), Gaps = 12/359 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +MS ALR + + TS NP V C+IV G V+G G G PHAE+ AL + Sbjct: 2 FTALDYEYMSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRK 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GAT YVTLEPCSH+GR+PPC + +I+ G+ +VV+ ++DP+ V+G+G +WL + Sbjct: 62 AGDLAKGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI I ++ + + ++TR R + KIA S D + S IT ++ Sbjct: 122 GIAIQAGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S AIL GI +V DDP+LT R + PMRI++D + + L +K+++ A Sbjct: 182 DGHKWRARSCAILTGISSVRKDDPQLTVRYITVS-RQPMRIVVDSNLETPLQAKLLQNAD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297 I T +I+ DLK ++ L G+ LLVE G Sbjct: 241 --TTWIFTAQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPV 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352 + + + + LVD II Y + ++G + + + + G DV L Sbjct: 299 LNGALVTAGLVDEIIFYFAPSLLGNSAQAMLALPEIGDLSEKYDLQISDIRKIGMDVRL 357 >gi|253581821|ref|ZP_04859045.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium varium ATCC 27725] gi|251836170|gb|EES64707.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium varium ATCC 27725] Length = 358 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 199/361 (55%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE Sbjct: 1 MDKKYMERALELAALGEGYVNPNPMVGAVVVKDGKIVGEGYHKKYGGPHAEVFALEEAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GAT YVTLEPCSHYG++PPCA+ II+ GI+R ++ DP+ VSGRG++ ++ GI Sbjct: 61 KAEGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCIIASLDPNPLVSGRGIKMMTDAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +ME E ++ K ++ LK ++ D I S IT +++ +V Sbjct: 121 VVTGIMEKEALELNRVFMKYISTKVPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVLADDP LT R+ +P R+++DP + +DSK + Sbjct: 181 KLRNKYMGIMVGINTVLADDPSLTARIE--NGRNPYRVVIDPFLDIPIDSKFVNFEDGKS 238 Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301 ++I + N+ + +KKN+N+I+ + D K +L + G+ +L+EGG+ + Sbjct: 239 ILITSYNNVEKERISFLKKKNVNVIFLEGIDFKLYDILKKIGEIGIDGVLLEGGSFLISK 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYI 355 + ++D ++ + ++G+ P +G+ +N V+ + +G++V +E+ Sbjct: 299 AFSEDVIDGGEIFIAPKILGDDKA-IPFIKGFNFENISDGFQLRNVKINNYGNNVSMEFY 357 Query: 356 G 356 Sbjct: 358 R 358 >gi|78043574|ref|YP_360307.1| riboflavin biosynthesis protein RibD [Carboxydothermus hydrogenoformans Z-2901] gi|77995689|gb|ABB14588.1| riboflavin biosynthesis protein RibD [Carboxydothermus hydrogenoformans Z-2901] Length = 361 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 123/355 (34%), Positives = 183/355 (51%), Gaps = 10/355 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL+ ++ +G TS NP V +IV KDG ++G G G PHAE +AL+ AGE Sbjct: 3 DQQLMKRALKLAKRALGRTSPNPVVGAVIVDKDGNIVGEGYHKKAGLPHAEREALKVAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARG T YVTLEPC HYGR+PPC II GI++VVV V DP+ +VSG+G++ L GI Sbjct: 63 KARGGTMYVTLEPCCHYGRTPPCTDAIIAAGIKKVVVAVRDPNPKVSGKGIEILRNAGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++ E + I+LK A++ D I S ++G S++ VH Sbjct: 123 VVEGVLAEEAFYLNEKFFKFIKTGLPFISLKWAMTVDGKIATETYDSRWVSGEKSRSFVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + DA+LVG T++ D+P LTCR+ Q +P RI+L L I + Sbjct: 183 RLRNEYDAVLVGAKTLIIDNPLLTCRIP--QGRNPYRIVLSGSGNLPEGLNIFQLEKEKN 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++I P I + R ++K+ L G+ S+LVEGGA V S + Sbjct: 241 ILITASKKLPKHVSNGFGHIITTPLGENRINIKEAFLELSRLGIISILVEGGAVVHASLL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 +RL D ++ + ++G P P+ + + + FG DV +E Sbjct: 301 QNRLADKAYIFIAPKIVGGKNAPGPIGDLKISLMKDALPLAIHKLRRFGEDVFIE 355 >gi|110802102|ref|YP_697858.1| riboflavin biosynthesis protein RibD [Clostridium perfringens SM101] gi|110682603|gb|ABG85973.1| riboflavin biosynthesis protein RibD [Clostridium perfringens SM101] Length = 365 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 122/361 (33%), Positives = 184/361 (50%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVK G +IG G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGEGYHEFFGGDHAEINAINSSVK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ + VVV DP+ VSG G++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKTVVVGTLDPNPLVSGNGIKILREAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD K+ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLKIPLDSEILKNQSE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + K I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + SF+ ++ V+ I + + V G +P+E + F V F +D+ + Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKTFHNDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|168179301|ref|ZP_02613965.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC 2916] gi|182669874|gb|EDT81850.1| riboflavin biosynthesis protein RibD [Clostridium botulinum NCTC 2916] Length = 365 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 117/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ ++ G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+ Sbjct: 6 FYMEKALKLAKRGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGIGT++ D+P LT R+ + SP II+D ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ + + L +L+ L GV S+L+EGG+ + Sbjct: 244 AATKKHKSPSKKNVLENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361 >gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185] gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185] Length = 384 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 191/371 (51%), Gaps = 22/371 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 5 ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L Sbjct: 65 RMAGEHARGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + L +LL+ L Sbjct: 245 LPLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +LVE GA +A +F+ L D ++LY++ ++G G Y M V Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361 Query: 342 RRDYFGSDVCL 352 G D L Sbjct: 362 DERKLGPDTRL 372 >gi|257468833|ref|ZP_05632927.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium ulcerans ATCC 49185] gi|317063083|ref|ZP_07927568.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium ulcerans ATCC 49185] gi|313688759|gb|EFS25594.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium ulcerans ATCC 49185] Length = 358 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 200/361 (55%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL + G + NP V ++VKDG ++G G G PHAEV ALEEAGE Sbjct: 1 MDKKYMERALELAALGEGNVNPNPMVGAVVVKDGKILGEGYHRKYGGPHAEVFALEEAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ VSGRG++ ++ GI Sbjct: 61 KAKGATIYVTLEPCSHYGKTPPCAKKIIDMGIKRCVIASLDPNPLVSGRGIKMMTDAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ +ME E ++ K ++ LK ++ D I S IT +++ +V Sbjct: 121 VITGIMEKEALELNRVFMKYISTKTPYLFLKCGITLDGKIASRTGNSKWITNELAREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVLADDP LT R+ +P RI++DP + LDSK + Sbjct: 181 RLRNKYMGIMVGINTVLADDPSLTARIE--NGRNPYRIVIDPFLDIPLDSKFVNFEDGKS 238 Query: 245 VIIVTEND-DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301 +++ + N+ + + KN+N+I+ + + K +L + G+ ++L+EGG+ + Sbjct: 239 ILVTSYNNVEKEKISLLKNKNVNVIFLEGTNFKICDILKKVGETGIDAVLLEGGSFLISR 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYI 355 + +D ++ + ++G+G P +G+ +N V+ + +G++V +E+ Sbjct: 299 AFAEKAIDGGEIFIAPKILGDGEA-VPFIKGFTCENISDGFQLENVKINNYGNNVSMEFY 357 Query: 356 G 356 Sbjct: 358 R 358 >gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cronobacter turicensis z3032] gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032] Length = 367 Score = 360 bits (925), Expect = 1e-97, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 177/363 (48%), Gaps = 18/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + T NP V C+IV DG+++G G G PHAEV AL AG++ Sbjct: 3 DEFYMARALKLASQGRFTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q G+ + Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M SE + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLADDP +T R + L E P+RI+LD +++ Sbjct: 183 LRAESHAILTTSATVLADDPSMTVRWDELGEATQAVYPRENLRQPLRIVLDRQNQVTPAH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 KI+ + D + ++ ++ DL L+ L R V SL VE Sbjct: 243 KIVNQPGE--TWLARACPDDAVWPEGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + LVD +I+Y + ++G LE G D+ Sbjct: 301 GPQLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDL 360 Query: 351 CLE 353 L Sbjct: 361 RLR 363 >gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223] gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223] Length = 384 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 134/371 (36%), Positives = 191/371 (51%), Gaps = 22/371 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 5 ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L Sbjct: 65 RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + + A+++P+I+V+ P A +++ + L +LL+ L Sbjct: 245 LPLSAACL--AIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +LVE GA +A +F+ L D ++LY++ ++G G Y M V Sbjct: 302 SCNHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361 Query: 342 RRDYFGSDVCL 352 G D L Sbjct: 362 DERKLGPDTRL 372 >gi|126660826|ref|ZP_01731920.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110] gi|126617877|gb|EAZ88652.1| riboflavin biosynthesis protein [Cyanothece sp. CCY0110] Length = 364 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 118/356 (33%), Positives = 185/356 (51%), Gaps = 10/356 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D + M L +R +G TS NP V +IVKDG +IG G G PHAEV AL EAG Sbjct: 6 NVDQQMMQRCLTLARQGLGYTSPNPLVGAVIVKDGKIIGEGFHPKAGEPHAEVFALREAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A G T YV LEPC+HYGR+PPC + +I + RVVV + DP+ VSG+G+ L + GI Sbjct: 66 EKAVGGTVYVNLEPCNHYGRTPPCTEALISAKVARVVVGMVDPNPLVSGKGIARLQEAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E+ A+ R + + LK A++ D I + S +TG S+ V Sbjct: 126 EVTVGVEEAACLRLNEAFCHRILNNQPFGILKYAMTLDGKISSSTGHSAWVTGTKSRQLV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RA DA++VG TV D+P LT ++ + +P+R+++ + L ++ + + A Sbjct: 186 HQIRAGCDAVIVGGNTVRRDNPHLT--IHQVTGVNPLRVVMSRNLHLPEEANLWNVDI-A 242 Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I+ TE ++P L R K + +I +++ IL R + S+L E G + Sbjct: 243 PTIVFTEWGNNPSLQTKLRDKGVEVIELSPLTPSQVMDILYERQLCSVLWECGGVLGAEA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 I R++ I+ + + +IG SP+ + L+K V D+ +E Sbjct: 303 ITQRVIQKIMAFIAPKIIGGFSAASPVGDLGLDKMSDALPLQNVSFRQVERDILVE 358 >gi|169342987|ref|ZP_02864015.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C str. JGS1495] gi|169298896|gb|EDS80970.1| riboflavin biosynthesis protein RibD [Clostridium perfringens C str. JGS1495] Length = 365 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 186/361 (51%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKSIKILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + K I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + +F+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora CFBP1430] gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946] gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Erwinia amylovora ATCC 49946] gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora CFBP1430] Length = 367 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I + D + + + Y D DL +L +L + + SL VE Sbjct: 243 RLISQPGE--TWLARTAGDDLDWPDNVSQLMVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA A + + + +VD +I+Y + ++G+ G LE F G D+ Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360 Query: 351 CLEYIG 356 L Sbjct: 361 RLTLTP 366 >gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703] gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703] Length = 370 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 188/373 (50%), Gaps = 19/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V S D +M+ AL +R + TS NP+V C+IV+DG V+G G G PHAEV AL Sbjct: 1 MSVLS-DEFYMARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHAL 59 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GAT YVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRGL L Sbjct: 60 RMAGDKAQGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLH 119 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + +M + +L R ++ LK+ S D MA S IT + Sbjct: 120 QAGIEVCHGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQA 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA+S AIL TVLADDP L R L P+RII+D Sbjct: 180 RQDVQRFRARSSAILSSSATVLADDPSLAVRWQELDADTQRIYPQESLRQPVRIIVDSQS 239 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ + +++ + D + + ++ +Y + DL L+ +L R + Sbjct: 240 RVTPEHRLVSQPGS--TWLARPQRDGLAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 S+ VE G +A + + + +VD +I+Y + ++G+ P S +E F+ Sbjct: 298 SVWVEAGPRLAGALLQANVVDELIVYIAPRLLGDAARPLCVLSGVETLSQTPEFLIADVC 357 Query: 345 YFGSDVCLEYIGK 357 G DV L + Sbjct: 358 QVGPDVRLTLKPR 370 >gi|187778552|ref|ZP_02995025.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC 15579] gi|187772177|gb|EDU35979.1| hypothetical protein CLOSPO_02147 [Clostridium sporogenes ATCC 15579] Length = 364 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 119/358 (33%), Positives = 189/358 (52%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ ++ G + NP V +++KD +IG G Y G PHAEV AL EAGE+A+ Sbjct: 6 FYMEKALKLAKKGEGKVNPNPKVGAIVIKDNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + V+ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAKAIVKAGIAKAVIAMKDPNSLVQGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K + LK A + D I S ITG S+ +VH +R Sbjct: 126 DIMEKESKELNEVFIKYITKKEPFVVLKTASTLDGKIATKKGESKWITGEESRYRVHQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGIGT++ D+P LT R+ + SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIE--EGRSPKAIIVDSNLRIPLESKILETINARSIYI 243 Query: 248 VTENDDPV--LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 T + I+ + + LKKL+ L + S+L+EGG+ + Sbjct: 244 ATTKKHKDLSKKNDLENLGVKILEFEENEEGKVPLKKLMQYLGEEEIDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + +IG + + ++ + + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIIGGQDSKTMIGGTGVDNLKDMFKLQNLNFEKIGEDILIE 361 >gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri ATCC 29473] gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri ATCC 29473] Length = 369 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 183/368 (49%), Gaps = 20/368 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 4 DEIYMARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMAGDA 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ GIRRVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 EHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP L R L P RIILD +++ Sbjct: 184 FRAQSSAILSTSATVLADDPSLIVRWTELDADTQRIYPELALRQPTRIILDSQNRVTPAH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I+ + + D + + Y + DL LL L R + S+ VE Sbjct: 244 QVIRQPGD--CWLARVDADQQHWPDNVDQLLLPRYGNGVDLVLLLMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + +VD +ILY + ++G+ G+P ++ F G D Sbjct: 302 GPQLAGALLQAGVVDELILYVAPKLLGDNARGLCGLPG-IDRLSQVPEFSFSDVTQVGPD 360 Query: 350 VCLEYIGK 357 + L K Sbjct: 361 LRLRLKPK 368 >gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195] gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195] gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678] Length = 384 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 22/371 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S D + MS A++ +R T NP V C+IVKD ++G G G PHAEV AL Sbjct: 5 ISWSVLDTQMMSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 65 RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + L +LL+ L Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +LVE GA +A +F+ L D ++LY++ ++G G Y V Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALTLV 361 Query: 342 RRDYFGSDVCL 352 G D L Sbjct: 362 DERKLGPDTRL 372 >gi|319744810|gb|EFV97150.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae ATCC 13813] Length = 369 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ K+ + LK A++ D I S I+ S+ V L Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 + + +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 303 LEAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358 >gi|323141090|ref|ZP_08075995.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT 12067] gi|322414466|gb|EFY05280.1| riboflavin biosynthesis protein RibD [Phascolarctobacterium sp. YIT 12067] Length = 388 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 138/371 (37%), Positives = 200/371 (53%), Gaps = 17/371 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V C+IV +G ++G G G PHAEV AL EA + Sbjct: 17 DEAYMQRALELALQAEGNTSPNPMVGCVIVDAEGNIVGEGYHHKAGEPHAEVNALAEAKQ 76 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GATAYVTLEPC+HYGR+ PC + GI +VVV DP+ +V+G+GL++L +GI Sbjct: 77 MAQGATAYVTLEPCAHYGRTGPCCVALARAGIGKVVVACLDPNPKVAGQGLEYLRLQGIE 136 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E E K + T ++R ITLK A++ D I A S ITG ++ H Sbjct: 137 VVTGVCEKEAKRLNERFFTWITKQRPFITLKYAMTLDGKIATATGDSKWITGEEARTFAH 196 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR Q DA+LVGIGTVL DDPELT RL ++ +P+R++LD K+SL + ++ LA Sbjct: 197 RLRKQHDAVLVGIGTVLEDDPELTTRL--VRGKNPVRVVLDSSLKISLMAAVLN--PLAD 252 Query: 245 VIIVTENDDPVLALAFRKK--NINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 II T D ++ N+ ++ D + +++ L RG+ SLLVEGG+A+ Sbjct: 253 TIIFTGLDSDIVKAEALAALPNVEVVRLPLADGVLPVAQVVQALAERGIASLLVEGGSAI 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + ++ L D + + + +IG P+ V + GSDV + Sbjct: 313 HGALFDAGLADRVCAFVAPKLIGGAAALPPVGGAGSSLVETGWQLTEVEMEKLGSDVLIT 372 Query: 354 YIGKNLCLQEL 364 + L QEL Sbjct: 373 GLVPELDKQEL 383 >gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia amylovora ATCC BAA-2158] Length = 367 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 181/366 (49%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+D ++G G G PHAEV AL AGE+ Sbjct: 3 DEAYMARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +RGATAYVTLEPCSH+GR+PPC + +I G++RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 SRGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 MM E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I + D + + Y D DL +L +L + + SL VE Sbjct: 243 RLISQPGE--TWLARTAGDDLDWPDNVSQLTVPRYQDRLDLVAMLMLLGRKQINSLWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA A + + + +VD +I+Y + ++G+ G LE F G D+ Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVGPDI 360 Query: 351 CLEYIG 356 L Sbjct: 361 RLTLTP 366 >gi|260886861|ref|ZP_05898124.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|330839340|ref|YP_004413920.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|260863460|gb|EEX77960.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] gi|329747104|gb|AEC00461.1| riboflavin biosynthesis protein RibD [Selenomonas sputigena ATCC 35185] Length = 367 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 192/365 (52%), Gaps = 10/365 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL + G T+ NP V +IV++G ++G G G PHAEV AL AG+ Sbjct: 3 QDEDFMREALLLAANARGRTAPNPLVGAVIVREGRIVGAGWHRKAGTPHAEVHALAMAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GAT YVTLEPCSH+GR+ PCA+ +++ G++RVV + DP+ V+G+G L G+ Sbjct: 63 LAHGATVYVTLEPCSHHGRTGPCAEALVKAGVKRVVTAMLDPNPLVAGKGKAMLEAAGVE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ E + AYL EK +TLK A++ D I A S ITG ++ +VH Sbjct: 123 VTVGVLAEEARRLNEAYLKWVTEKLPFVTLKTAMTLDGKIATAAGKSQWITGEAARRRVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R +DAI+VGIGTVLADDP LT RL +P+R+I+D + L + +++ Sbjct: 183 EMRDVADAIVVGIGTVLADDPSLTTRLVDGTGRNPVRVIVDSRARTPLAATVVQDGAAKT 242 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ VT A + ++ + DL L+ +L R +TS+ VEGG + S Sbjct: 243 LVAVTCAAPEERCAALEAAGVEVVRAGEGERVDLATLMRLLAARDMTSVFVEGGGTLNFS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE-YI 355 + + LVD I + + ++G +P+E + + + G+D+ L Y+ Sbjct: 303 LLAAGLVDKIHAFIAPKIVGGKAALTPVEGAGFAELADAAVLTRLTAEQVGADILLTGYV 362 Query: 356 GKNLC 360 K Sbjct: 363 AKEAR 367 >gi|294784869|ref|ZP_06750157.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27] gi|294486583|gb|EFG33945.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_27] Length = 369 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ A+ ++ G + NP V +IVKDG +IG G G PHAEV AL EAG Sbjct: 4 NSDEKYMARAIELAKRGTGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH G++PPCA+ IIE GI+R VV DP+ V+G+G++ + GI Sbjct: 64 ENAKGATVYVTLEPCSHQGKTPPCAKRIIEAGIKRCVVACIDPNPLVAGKGMKIIENAGI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 124 EVELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNF 243 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGG 295 II+T ND+ ++ I+ + + K +L L + S+L+EGG Sbjct: 244 N-DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++D+ ++ + +IG+ P G+ N V + + +G + Sbjct: 303 SGLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFDNMEEVFKLPNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens DSM 7] gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens DSM 7] gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens TA208] gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus amyloliquefaciens LL3] Length = 371 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 178/362 (49%), Gaps = 11/362 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ A+ +R G T NP V ++VK+G ++G G G HAEV A+ AG Sbjct: 1 MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GA YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L GI Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ + + +L ++TLK A S D S IT ++ Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG GTV AD+P LTCRL P+R+ILD + + ++ T AP Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTVPETANVL-TDGAAP 238 Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T V L + + D + ++L+IL G+ S+ VEGGA+V S Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGS 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356 F+ + D + Y + +IG PS + + + + G D+ L I Sbjct: 299 FVKAGCFDELHFYFAPTLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIP 358 Query: 357 KN 358 K+ Sbjct: 359 KD 360 >gi|317056285|ref|YP_004104752.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7] gi|315448554|gb|ADU22118.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 7] Length = 369 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 177/369 (47%), Gaps = 16/369 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 FM AL + +G S NP V +IV+DG +I G G HAE A E Sbjct: 4 EDFMREALALAEKGMGHVSPNPMVGAVIVRDGNIIASGYHKRYGDLHAERSAFAECDAKD 63 Query: 66 -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + RGA YVTLEPC H+G+ PPC +IE GI+RV V DP+ V+G+G L + GI Sbjct: 64 IDCRGADMYVTLEPCCHHGKQPPCTDAVIEHGIKRVFVGSSDPNPLVAGKGTAILREHGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +++ E + +TLK A++ D I S ITG ++ V Sbjct: 124 EVTEGVLKDECDRLNEIFFKFITTGLPFVTLKYAMTLDGKIACYTGKSQWITGETARKHV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R AI+VG+GTVLADDP LTCR+ + P+RII D H + LDS I++T+ Sbjct: 184 HRERLHHAAIMVGVGTVLADDPMLTCRIKNV--RDPLRIICDTHLRTPLDSNIVRTSEKV 241 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 P +IV + D + K+ ++ + DL L+ L + S+L+EGG + Sbjct: 242 PTLIVCGDADSGRIGEYEKRGCKVLSLPDKNGSTDLSALMAYLGKEKIDSVLIEGGGMLG 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354 S + S +VD ++ Y + + G +P+ + R D+ +E Sbjct: 302 WSALESGIVDKVMAYVAPKIFGGSNAKTPVGGQGVAVPDDAFMLEDRRITELDGDILIEG 361 Query: 355 IGKNLCLQE 363 K C Q+ Sbjct: 362 RVKK-CSQD 369 >gi|77413098|ref|ZP_00789299.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515] gi|77160891|gb|EAO72001.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 515] Length = 369 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVE 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ K+ + LK A++ D I S I+ S+ V L Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQDGIDSLLIEGGSSLHFSA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 + + +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 358 >gi|194336939|ref|YP_002018733.1| riboflavin biosynthesis protein RibD [Pelodictyon phaeoclathratiforme BU-1] gi|194309416|gb|ACF44116.1| riboflavin biosynthesis protein RibD [Pelodictyon phaeoclathratiforme BU-1] Length = 366 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 189/359 (52%), Gaps = 13/359 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL + G S NP V +IV DG +IG G G PHAEV A+ + Sbjct: 5 DDLFFMRRALELAVLGAGSVSPNPMVGAVIVCDGEIIGEGYHQQFGGPHAEVHAIASVED 64 Query: 66 EA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 EA +T YVTLEPCSH+G++PPC+ I+E GI RVV+ DP V+V+G+G+ L G Sbjct: 65 EALLHHSTLYVTLEPCSHFGKTPPCSDLIVEKGIPRVVIGCRDPHVKVAGKGIAKLQAAG 124 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + ++E+E A++ + LK+A + D I + S ITG S+++ Sbjct: 125 IRVTEGVLEAECIGCNEAFIKSHTTGLPFVCLKLAQTLDGKIATSLGASRWITGEESRSE 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR+ DA++VG TV ADD +LT R +P R++LD +L L+SKI + Sbjct: 185 VHRLRSIYDAVMVGEATVRADDAQLTVR--NCSGRNPQRVVLDSQLRLPLESKIFGSEAP 242 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 V+ T R++ + +++ D DL++ L L RG+ S+LVEGG+ + Sbjct: 243 TIVVASTSFSASPKVAQLRERGVTVLFVDEHVGKLDLRQALVELHKRGILSVLVEGGSRL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ +LVD I+++ + + G P + + R +FG D+ LE Sbjct: 303 SAAFVREKLVDKILIFVAPKLFGGDALSAFAPLGVSMPDQAVDLRFGRPHFFGHDLLLE 361 >gi|328956808|ref|YP_004374194.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Carnobacterium sp. 17-4] gi|328673132|gb|AEB29178.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Carnobacterium sp. 17-4] Length = 355 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 192/357 (53%), Gaps = 14/357 (3%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATA 72 AL +R G T+ NP V +IVK G VIG+G G PHAEV A+ A ++ GAT Sbjct: 1 MALDLARKGKGWTTPNPLVGAVIVKGGRVIGQGYHQKYGQPHAEVNAIVSAKKDVTGATL 60 Query: 73 YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMME 131 YVTLEPCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI +V ++E Sbjct: 61 YVTLEPCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLE 120 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 E + ++ V K + +K A+S D I S I+G S+ QVH LR + Sbjct: 121 EESQKLNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELA 180 Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 I+VGI T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T Sbjct: 181 GIMVGIETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTK 238 Query: 252 -DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + ++ I +I + DL++L+ ++ +G+ S+L+EGGA + S + Sbjct: 239 RANNEKLETLKQMGIEVIVTKEKYGRVDLQELMKVVGAKGIDSILLEGGATLNFSALEEG 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357 +VD I Y + +IG + +E L+ F R G D+ +E YI K Sbjct: 299 IVDKIQSYIAPKIIGGKEAKTAVEGAGVHSLKSAFQIDRMTPVMVGEDLFVEGYIVK 355 >gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea MMB-1] gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea MMB-1] Length = 383 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 197/367 (53%), Gaps = 16/367 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +MS A++ ++ + T NP V C+IVKD +IG G A G HAEV AL A E Sbjct: 10 EYMSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMESVE 69 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPCSH G++PPCA +I+ GI VV + DP+ +V+GRGL L + G+ ++ Sbjct: 70 GATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQVIG 129 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E + + R E +I LK+A+S D M S ITG ++ V LR Sbjct: 130 PVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQRLR 189 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTA 240 AQSDAI+ GIG+V+ D+P +T R++ + P+R+I+D + ++KI+K Sbjct: 190 AQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILKPG 249 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGG 295 A + V E+ + A +K +NI + DL + + +L +G+ +LVE G Sbjct: 250 KEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVETG 309 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 A +A +F+ LVD +++Y + ++G P P++ G+D+ + Sbjct: 310 AELAGAFLREGLVDELVVYVAPKLLGSDARPLMRLPIDVMKDAVELELESVRSVGNDLKM 369 Query: 353 EYIGKNL 359 Y K L Sbjct: 370 VYFPKYL 376 >gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase, RibD [Shewanella putrefaciens 200] Length = 384 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 198/377 (52%), Gaps = 24/377 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL Sbjct: 5 ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 65 RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L L++ P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + + L +LL+ L Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340 +LVE GA +A +F+ L D ++LY++ ++G G +P ++ Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360 Query: 341 VRRDYFGSDVCLEYIGK 357 V G D L K Sbjct: 361 VDERKLGPDTRLTLSVK 377 >gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16] gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16] Length = 367 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 194/364 (53%), Gaps = 16/364 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 R+M AL ++ G T NP V C++VK+G +IG G G HAE+ AL AG EA Sbjct: 3 ERYMRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMAGSEA 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +G+TAYVTLEPCSH GR+ PCA ++E G++ V++ DP+ VSG G++ L + G+ + Sbjct: 63 KGSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQ 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + V + ++TLK AVS D I S IT ++ VH L Sbjct: 123 TGILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R+++ AI+VG+ TVL D+P LT R+ +P+R+I+D H + +D+ I+ T LAP Sbjct: 183 RSENQAIIVGVDTVLKDNPSLTARI--ANGRNPIRVIVDSHLRTPVDA-IVTTDGLAPTW 239 Query: 247 IVTENDD---PVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T + P K + ++ DLK+++ L ++S L+E G + Sbjct: 240 IFTAAEPRHLPEKQERLEKAGVRLVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNA 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLE-Y 354 +F+ ++LV +I+Y + +IG P+ LE ++K + G D+ L Y Sbjct: 300 AFLEAQLVQKLIVYVAPKLIGGALAPTFLEGSGIDKMADALPLAFSEATQIGPDLKLTAY 359 Query: 355 IGKN 358 + + Sbjct: 360 VVSD 363 >gi|229145969|ref|ZP_04274348.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24] gi|228637577|gb|EEK94028.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-ST24] Length = 348 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+RIILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS + + K + D+ +GK+ Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 336 >gi|319404317|emb|CBI77910.1| Riboflavin biosynthesis protein ribD [Bartonella rochalimae ATCC BAA-1498] Length = 374 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 157/374 (41%), Positives = 223/374 (59%), Gaps = 12/374 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56 M + D RFM+ A+R + H+GLT NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MNKAEQDKRFMAVAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTAIQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+ Sbjct: 61 VQALLMAGPLACGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG G GSV ++ Sbjct: 121 ALLRAAGIEVVEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGQGSVRVS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ LD+K Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEMRSPIRVILDKDLRIPLDAK 240 Query: 236 IIKTALLAPVIIVTENDD--PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +++TA P ++ +A + I I D + +L +L R + S Sbjct: 241 VVQTAANIPTWVICSTGSLKKRKKIALEQCGITICSVDTNNNLLSPFAILQLLYQRKINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+++ VD +I + + I++G+ I +P + YL + F V G+D Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNKVEIRMLGND 359 Query: 350 VCLEYIGKNLCLQE 363 ++ K LC Q Sbjct: 360 RLYKWRRKILCSQG 373 >gi|332977386|gb|EGK14164.1| riboflavin biosynthesis protein RibD [Desmospora sp. 8437] Length = 368 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 192/368 (52%), Gaps = 10/368 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D R+M ALR + G TS NP V ++VKDG ++G G G PHAEV AL Sbjct: 3 MNLTE-DERWMELALRLAEAARGQTSPNPLVGAVVVKDGQLLGSGAHLKAGTPHAEVHAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E+AG+ A+G+T YVTLEPC+HYGR+PPC + I G+RRVVV DPD VSG+G+Q L Sbjct: 62 EQAGKSAKGSTLYVTLEPCNHYGRTPPCTERTISSGVRRVVVGSTDPDPLVSGKGVQRLR 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ + ++ AY + +TLK AV+ D + S +TG + Sbjct: 122 EAGLSVKTGVLADRCTRLNEAYFHHRRTGFPFVTLKAAVTLDGKTATSDGDSRWVTGEAA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VH LR Q DA+LVG GT L D P+LT RL G +P+R+++D ++ L+S + Sbjct: 182 REEVHRLRHQYDAVLVGSGTALHDRPQLTVRLPGG-GKNPLRVVVDSRLRMPLNSPLADV 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGA 296 + + T+ D A + + + L+ + L G+ S+L E G Sbjct: 241 ESASTWVFCTDEADSGREAALTARGVRVYRTGAGPRVKLESVFRRLGREGIVSVLTESGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + S + V+ ++ + + ++G + + +++ ++ DV ++ G Sbjct: 301 ELNASLLREGWVNKVMFFIAPKILGGRDSLTAVGGTTVDQ----MKDALLLEDVSVDLFG 356 Query: 357 KNLCLQEL 364 +++C+ + Sbjct: 357 RDICVTGI 364 >gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Haemophilus parainfluenzae T3T1] Length = 376 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 198/379 (52%), Gaps = 23/379 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL Sbjct: 4 TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALA 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+ Sbjct: 64 DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123 Query: 122 KGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ + + +L R + ++ LK+A+S D MA S ITG ++ Sbjct: 124 AGIPSAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V +RA++ A+L TVLADDP L R N + P+RIILD + Sbjct: 184 ADVQKMRAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNR 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + ++ T +PV +V P F I+ + D L+T L R V S Sbjct: 244 VQPSHQLFHT--HSPVWLV--GSIPRDMSVFPDFCEQILLPENYDFDLLMTELGKRQVNS 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE GA +A S I VD +I+Y + ++G+ +P LE+ + + Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVAPKLLGDNARGLCQLPH-LEKLADVPLWQLQECE 358 Query: 345 YFGSDVCLEYIGKNLCLQE 363 G D+ L Y+ NL ++E Sbjct: 359 RIGDDLKLSYLP-NLLIKE 376 >gi|309778325|ref|ZP_07673252.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium 3_1_53] gi|308913921|gb|EFP59734.1| riboflavin biosynthesis protein RibD [Erysipelotrichaceae bacterium 3_1_53] Length = 366 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 184/367 (50%), Gaps = 13/367 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G + NP V +IVKD +IG+G G HAE AL+ E Sbjct: 3 DTEYMKLAIKLAKKGAGYVNPNPMVGAVIVKDNRIIGQGYHEIFGGLHAERNALKNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT YVTLEPC HYG++PPC + II+ GI RVVV D + VSG+G++ L + I + Sbjct: 63 PVGATLYVTLEPCCHYGKTPPCTEAIIKSGITRVVVGTLDCNPIVSGKGVKVLEENNIQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E + + + ++ +K A++ D I S I+G ++ QVH Sbjct: 123 VIGILEMECQQLIKVFRKYVTRHIPYVFMKYAMTMDGKIATYTNQSKWISGEKARKQVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + AI+VG+ TV+ DDP LTCRL +P+RI+ D + + SKIIKTA Sbjct: 183 FRHKVTAIMVGVNTVIQDDPLLTCRLE--NGENPIRIVCDTDLRTPITSKIIKTANDIKT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T + D +RK IIY + DL L+ L + SLL+EGG A+ S Sbjct: 241 YIATSSIDESKIALYRKCGCEIIYTKKKGNHIDLMNLMQCLGNMQIDSLLLEGGNAMNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356 + ++VD + +Y + + G SP+ + G+D +E Sbjct: 301 ALEQQIVDEVQIYIAPKIFGGS-AKSPVSGQGVAFPNDAIMLKPYAFSQVGNDYFIESEV 359 Query: 357 KNLCLQE 363 CLQE Sbjct: 360 IYPCLQE 366 >gi|169830807|ref|YP_001716789.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis audaxviator MP104C] gi|169637651|gb|ACA59157.1| riboflavin biosynthesis protein RibD [Candidatus Desulforudis audaxviator MP104C] Length = 372 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 129/361 (35%), Positives = 194/361 (53%), Gaps = 11/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V ++V+DG ++GRG A G PHAE+ AL +AGE Sbjct: 1 MDQEYMRMALDLAVRARGRTSPNPLVGAVVVRDGEIVGRGYHARAGLPHAEIVALAQAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARG+T YV+LEPC H+GR+ PC + +I G+RRVV + DP+ +V+GRG+ L + G+ Sbjct: 61 AARGSTLYVSLEPCCHFGRTGPCTEAVIAAGVRRVVTAMRDPNPKVAGRGIARLREAGVE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ E ++ R + LK+AVS D I S ITG ++ H Sbjct: 121 VTEDVLRDEAARLNEIFIKYITTGRPFVALKVAVSLDGKIATRTGDSRWITGGPAREYAH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA+LVG GTV+ DDP LT RL G P+RI+LD ++ S+++ AP Sbjct: 181 RLRDTYDALLVGRGTVVKDDPSLTTRLPGG-GRDPVRIVLDSLARIPESSRVLSGESTAP 239 Query: 245 VIIVTENDDPVLALA-FRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 VI+ P +A + + ++ C DL+ LL L R +TS++VEGGA V Sbjct: 240 VIVAVTGQAPRTRVAGLESRGVQVVRCGPGPAVDLEVLLRELAAREITSVMVEGGATVHA 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 SF+ +R VD + + + ++G P + + + VRR G+D+C+E Sbjct: 300 SFLEARFVDKLHWFVAPKIVGGVEAPGAVAGRGVGRISEAVGLERVRRIELGNDLCIEGY 359 Query: 356 G 356 Sbjct: 360 P 360 >gi|220929424|ref|YP_002506333.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum H10] gi|219999752|gb|ACL76353.1| riboflavin biosynthesis protein RibD [Clostridium cellulolyticum H10] Length = 367 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 109/365 (29%), Positives = 187/365 (51%), Gaps = 11/365 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + +M L ++ G T+ NP V +I K+G +I G GC HAEV A A Sbjct: 2 NIHEFYMKRTLEIAKEGWGRTNPNPLVGAVIAKNGKIISEGFHEALGCAHAEVCAFSNAP 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT YV LEPCSHYGR+PPC + II+ GI+ VVV + DP+ +VSG+G+Q L I Sbjct: 62 TDISGATLYVNLEPCSHYGRTPPCVKAIIDSGIKEVVVAMVDPNPKVSGKGIQMLKDANI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E K ++ ++ + +K A++ D I S I+G S+ V Sbjct: 122 NVIVGVLEEEAKKLNEIFIHYITKRLPFVIMKTAMTLDGKIASVTGDSKWISGEYSREYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + +I+VG+ TV+ D+P LT R + P+RI++D ++ ++S++I++ A Sbjct: 182 HAIRNRVSSIMVGVNTVINDNPSLTARPISGKGIDPVRIVVDSSGRIPIESRVIQSDSEA 241 Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +I+ T + + II +L++L+ L + S+L+EGG + Sbjct: 242 GLILATTEKIHKDKETQLLSRGVRIIKTAPKNGKVNLRELMEELYKLEIDSVLLEGGGTL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 S + + +V+ ++ + S +IG +P+ +EK +R + F DV +E Sbjct: 302 NFSALEAGIVNKVMTFISPKIIGGSSAVTPVGGKGIEKMKDAIALSDIRVERFDRDVLIE 361 Query: 354 YIGKN 358 + Sbjct: 362 GYVAD 366 >gi|253576364|ref|ZP_04853694.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon 786 str. D14] gi|251844257|gb|EES72275.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. oral taxon 786 str. D14] Length = 373 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 193/362 (53%), Gaps = 9/362 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL + G T TNP V ++VKDG ++G G G PHAEV AL AG Sbjct: 5 DDEYYMALALDMAERAQGQTGTNPVVGAVVVKDGALVGLGTHLKRGTPHAEVHALNMAGS 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A G+T YVTLEPCSH+G +PPCA+ +I ++RVVV +DP+ V+G+G++ L GI Sbjct: 65 QAEGSTVYVTLEPCSHHGLTPPCAERLIHEKVQRVVVACEDPNPLVAGKGIELLRAAGIE 124 Query: 126 VDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ + E + ++ ++T+K A + D + S I+ ++ VH Sbjct: 125 VEVGVLRERALKLNRRFIKFITTGMPYVTIKSASTLDGKLASRTGDSKWISNEGAREIVH 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R + AI+VG T+LADDP+LT RL+ + SP+RII D ++ +++++ Sbjct: 185 TMRHRHQAIMVGASTILADDPQLTTRLS-VPGLSPIRIIADSTLRIPETAQVLRDGQAPT 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I+ TE DP A ++ C DL+ L L RG++S+LVEGG + S Sbjct: 244 WIVTTEQADPDKAARLIHLGAEVLRCGSGPQVDLRNALVQLGQRGISSVLVEGGGRLNGS 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +LVD I+L+ + +IG PS + +R D+ +E IG N+C+ Sbjct: 304 LLEQQLVDEIVLFLAPKLIGGAEAPSSFSFAG----YDLMRDAVTLRDMEVEQIGDNVCI 359 Query: 362 QE 363 + Sbjct: 360 RG 361 >gi|25010822|ref|NP_735217.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae NEM316] gi|23095201|emb|CAD46411.1| Unknown [Streptococcus agalactiae NEM316] Length = 369 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 190/356 (53%), Gaps = 12/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ Sbjct: 5 EDYMALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDI 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++ + + Sbjct: 65 SGSTLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKECLNVE 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ K+ + LK A++ D I S I+ S+ V L Sbjct: 125 VGILREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P Sbjct: 185 RQKCSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTW 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S Sbjct: 243 IATCSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSA 302 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMC--VRRDYFGSDVCLE 353 + + +V+ +I++ + +IG + + L+ ++F + SDV +E Sbjct: 303 LKAGIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQDFRVKDIELSRMDSDVVIE 358 >gi|81299014|ref|YP_399222.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Synechococcus elongatus PCC 7942] gi|81167895|gb|ABB56235.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Synechococcus elongatus PCC 7942] Length = 368 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 110/367 (29%), Positives = 190/367 (51%), Gaps = 8/367 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D ++M L + G T+ NP V C+IV+ ++G G G PHAEV AL + Sbjct: 1 MSDRDRQYMQRCLELAAQAAGQTAPNPMVGCIIVQGEEIVGEGFHPAAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+HYGR+PPC++ ++ G++RVVV + DPD RV+G G+ L Q Sbjct: 61 AGDRARGATLYVNLEPCNHYGRTPPCSEAVVAAGLKRVVVGMVDPDPRVAGGGIARLQQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ + A++ R ++R LK A++ D I + S ++ S+ Sbjct: 121 GIEVTVGVEQAACEQMNEAFVWRVTQRRPFGILKYAMTLDGRIAASTGHSAWVSSPESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH LR+Q DA++VG TV D+P LTC + + P+R+++ L L++ + +T + Sbjct: 181 QVHSLRSQVDAVIVGGNTVRLDNPRLTCH--DISDRHPLRVVMSRRLDLPLEANLWQTDI 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ E D + + ++ ++ L RG+++LL E G +A + Sbjct: 239 APTLVFTEETADRDRWRKLEDQGVEVVVRSPLTPSEVSAELFNRGLSTLLWECGGTLAAA 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIG 356 + + ++ + + +IG SP+ + L + ++ + G D+C Sbjct: 299 ALREGQIQKLLAFIAPKLIGGPPGYSPVGDLGLLRMDQALKVERSQWQAIGPDLCWTAYL 358 Query: 357 KNLCLQE 363 + QE Sbjct: 359 DLVSGQE 365 >gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 181/367 (49%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + + AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 7 QDEYYXARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXAGE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV DP+ +V+GRGL L Q GI Sbjct: 67 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGID 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + SE + +L R +I LK+ S D A S IT ++ V Sbjct: 127 VSHGLXXSEAEQLNKGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQ 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LLRAQS AIL TVLADDP LT R + L E P+RI++D +++ Sbjct: 187 LLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPV 246 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ +D + + + DL L L + + S+ VE Sbjct: 247 HRIVQQPGE--TWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLXXQLGKQQINSIWVE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 305 AGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPD 364 Query: 350 VCLEYIG 356 VCL +G Sbjct: 365 VCLHLVG 371 >gi|51246637|ref|YP_066521.1| riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila LSv54] gi|50877674|emb|CAG37514.1| probable riboflavin biosynthesis protein (RibD) [Desulfotalea psychrophila LSv54] Length = 401 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 190/359 (52%), Gaps = 10/359 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M AL +R G TS NP V +IV DG V+GRG G PHAEV AL +AG Sbjct: 37 ELDQKYMLLALAEARRGQGRTSPNPCVGAIIVGDGSVVGRGYHKKAGTPHAEVHALRDAG 96 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A GATAYVTLEPCSH GR+PPC + + G+ RVVV + DP+ V+GRG+Q+L GI Sbjct: 97 EKAAGATAYVTLEPCSHTGRTPPCCVALAKAGVLRVVVGMTDPNPLVNGRGVQYLRDHGI 156 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E++ + ++ + + +K +S D + ITG S V Sbjct: 157 EVSTGICEADCREINRPFIKKITTGTPWMIMKAGISLDGRMNYKEGEPGWITGPESGALV 216 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DAI+VG GTV+ D+P LT RL G P+ +ILD K D+ + A Sbjct: 217 HQLRDSVDAIMVGSGTVMIDNPSLTTRLPGGGGRDPVAVILDSQLKTDPDAHVYSAASGR 276 Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 V++ ++D D F ++ + ++ + DL +++ +L R + S+LVEGGA + Sbjct: 277 SVLVFCQHDVDEGRKEVFAERGVIVLPVSSLPEGLDLGEIVAVLGERDICSVLVEGGAQL 336 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + RL D + L+++ + G+GG+ PL VRR G+ + LE Sbjct: 337 HGQLLQKRLYDYLYLFQAPLFAGDGGVSLVTGCPLAGREDAIALRGVRRSVLGAHLLLE 395 >gi|229128665|ref|ZP_04257643.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4] gi|228654858|gb|EEL10718.1| Riboflavin biosynthesis protein [Bacillus cereus BDRD-Cer4] Length = 348 Score = 359 bits (922), Expect = 3e-97, Method: Composition-based stats. Identities = 122/341 (35%), Positives = 185/341 (54%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+RIILD ++ +++ ++ I T N +A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLLVEGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + DV +GK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 336 >gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Dickeya dadantii 3937] gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Dickeya dadantii 3937] Length = 370 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 180/362 (49%), Gaps = 18/362 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R TS NP+V C+IV+D ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 RHSVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQH 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I + D ++ ++ DL L+ L R + ++ VE Sbjct: 246 RLISQPGQ--TWLARSRQDGQPWPDGVEQLDMPLHGGGIDLVALMMTLGKRQINTVWVEA 303 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +I+Y + ++G+ P LE+ F G D+ Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARPLCVLPGLEQLSQAPAFAMTDVCQVGPDL 363 Query: 351 CL 352 L Sbjct: 364 RL 365 >gi|257063444|ref|YP_003143116.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Slackia heliotrinireducens DSM 20476] gi|256791097|gb|ACV21767.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Slackia heliotrinireducens DSM 20476] Length = 371 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 180/366 (49%), Gaps = 16/366 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D + M A+ +R G T+ NP V +IVKDG VIG G G HAE AL Sbjct: 2 TADEKMMRRAIELARTAAGWTNPNPLVGAVIVKDGRVIGEGCHERYGDLHAERNALASCT 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E +GAT YVTLEPCSH G+ PPCA ++E GI RVVV DP+ VSGRG+ L GI Sbjct: 62 ESPQGATMYVTLEPCSHTGKQPPCADALVEAGIARVVVGSRDPNPLVSGRGIARLRAAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + + E + K ++ K A++ D I A + ++ S+ Sbjct: 122 QVEEDFLRQECDGINPVFFHFITTKTPYVVAKWAMTADGKIATATRDARWVSCEASRADT 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR + I+VG+ TVLADDP L R G+ + P+RI+ D ++ LDS ++++A Sbjct: 182 HELRHRLAGIMVGVNTVLADDPMLNAR-RGVPSNQPLRIVCDSSLRIPLDSALVRSATEV 240 Query: 244 PVIIVT-----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294 PV++ + + A+ R ++++ DL L+ L GV S+LVEG Sbjct: 241 PVLVACACNIDQGERLDKAIRLRAAGVDVVSLPGADGKVDLAALMAHLGESGVDSVLVEG 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSD 349 G + + S LVD +++Y + V G P+P+ + + D G D Sbjct: 301 GGTLHANMFKSGLVDEVVVYLAPKVCGGTSAPTPVGGAGAALMADALQLGKPQVDIVGDD 360 Query: 350 VCLEYI 355 V L Y Sbjct: 361 VRLTYR 366 >gi|256846007|ref|ZP_05551465.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2] gi|256719566|gb|EEU33121.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 3_1_36A2] Length = 369 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 118/364 (32%), Positives = 197/364 (54%), Gaps = 17/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEVGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKSGIEKRNPFRVVIDPNLESPIEAKFLNFN 244 Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296 II+T ND+ ++ I+ + + K +L L + S+L+EGG+ Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDV 350 + + ++D+ ++ + +IG+ P G+ N V + + +G ++ Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDNSA-IPFINGFNFGNMEEVFKLPNPKFNIYGDNI 362 Query: 351 CLEY 354 +E+ Sbjct: 363 SIEF 366 >gi|312143490|ref|YP_003994936.1| riboflavin biosynthesis protein RibD [Halanaerobium sp. 'sapolanicus'] gi|311904141|gb|ADQ14582.1| riboflavin biosynthesis protein RibD [Halanaerobium sp. 'sapolanicus'] Length = 381 Score = 359 bits (921), Expect = 4e-97, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 195/371 (52%), Gaps = 20/371 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D R+M+ AL ++ G S NP V ++VK+G +IG G + G PHAEV AL+ Sbjct: 4 KFSITDIRYMARALEIAKKGEGSASPNPMVGAVLVKNGEIIGEGYHKFYGGPHAEVYALK 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG+ A A Y+TLEPCSHYG++PPCA +I+ GI+R V+ + DP+ VSGRG++ L + Sbjct: 64 EAGQNANNADIYLTLEPCSHYGKTPPCADKLIKSGIKRAVIAMVDPNPEVSGRGIELLKE 123 Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI V+ + +E +L ++ LK A + D I + S IT ++ Sbjct: 124 AGIEVELGLMAEKAKDLNEVFLKYITSDYPYVYLKKAQTLDGFIASSTGHSKWITNEKAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + H LR + DAI+VGIGTVLADDP LT RL +R+ILDP + LD+KII Sbjct: 184 LEGHKLRHKVDAIMVGIGTVLADDPSLTTRLEEQGGIDSLRVILDPELDMPLDAKIINQE 243 Query: 241 LLAPVIIVTENDD---------PVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRG 286 A +++ K N++II +L +L L Sbjct: 244 STASTLLIASEASLESNSAALMEKKEKLLAKNNVDIIAVPLEEEGFLNLDFILRQLHDLN 303 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEG----YLEKNFMCV 341 ++S+L+EGGA +++SF+N L+D + + + G+ GI S +G K+ + Sbjct: 304 ISSILLEGGAKLSYSFLNKGLIDKFYYFIAPKIYGGDDGISSFCGQGPKLMSDSKDIKIL 363 Query: 342 RRDYFGSDVCL 352 R + G ++ L Sbjct: 364 DRRFLGDNILL 374 >gi|330830923|ref|YP_004393875.1| pyrimidine deaminase/reductase RibD [Aeromonas veronii B565] gi|328806059|gb|AEB51258.1| Pyrimidine deaminase/reductase RibD [Aeromonas veronii B565] Length = 369 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 121/366 (33%), Positives = 184/366 (50%), Gaps = 19/366 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D ++MS AL +R T+ NP V ++VKDG+V+G G G PHAEV AL Sbjct: 2 FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ +V GRGL+ LS+ Sbjct: 62 AGDNARGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI D ++ SE + + R +T+K+ S D MA S IT ++ Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V LRA+ DA+L TVLAD LT R + L P+R+I+D +L Sbjct: 182 DVQRLRARHDAVLSSAETVLADGASLTVRWDELPPSVKVSYPKETLRQPLRVIVDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + + + +PV++ ++ + ++ DL L +L + V S+ Sbjct: 242 TPELPLFQNE--SPVLLARHKASGEWPEWVQQLELPLLD-GKLDLVSLFMLLAKQNVNSV 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYF 346 LVE G + + + LVD ++LY++ ++G+ G G + Sbjct: 299 LVEAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLAIKDVRMV 358 Query: 347 GSDVCL 352 G D+ + Sbjct: 359 GQDIRI 364 >gi|325577912|ref|ZP_08148145.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae ATCC 33392] gi|325160342|gb|EGC72469.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae ATCC 33392] Length = 376 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 196/379 (51%), Gaps = 23/379 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +FM AL + T+ NPSV C++VK+G ++G+G G PHAE AL Sbjct: 4 TFSPDDVKFMQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKAGQPHAERMALA 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE+A+GATAYVTLEPCSHYGR+PPCA +IE G+ RVV + DP+ +V+G+GL+ L+ Sbjct: 64 DAGEKAKGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLAD 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ + + +L R + ++ LK+A+S D MA S ITG ++ Sbjct: 124 AGIPTAVNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V +RA+S A+L TVLADDP L R N + P+R+ILD + Sbjct: 184 ADVQKMRAKSTALLSTSATVLADDPSLNVRWNQFPDDLKTEYAEETVRQPIRVILDSKNR 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + ++ T +PV +V P F I+ + D L+T L R V S Sbjct: 244 VQSSHQLFHT--HSPVWLV--GSIPRDMSVFPDFCEQILLSENYDFDMLMTELGKRQVNS 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE GA +A S I VD +I+Y S ++G+ +P LE+ + + Sbjct: 300 VWVEAGANLAGSLIEQHAVDELIIYVSPKLLGDKARGLCQLPH-LEKLADAPLWQLQECE 358 Query: 345 YFGSDVCLEYIGKNLCLQE 363 D+ L Y+ NL +Q Sbjct: 359 RIEDDLKLSYLP-NLLIQA 376 >gi|332799789|ref|YP_004461288.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1] gi|332697524|gb|AEE91981.1| riboflavin biosynthesis protein RibD [Tepidanaerobacter sp. Re1] Length = 361 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 125/360 (34%), Positives = 189/360 (52%), Gaps = 9/360 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D FM AL + T NP V +IVKDG ++G G G PHAE++AL+EAG Sbjct: 2 ETDEYFMQRALELAEKGRKTTGENPMVGAVIVKDGKIVGEGYHKKAGGPHAEIEALKEAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YV LEPC HYG++PPC + +I+ I RVV ++DP+ +V+G+G L GI Sbjct: 62 LNAKGATIYVNLEPCCHYGKTPPCTEALIKAQIARVVAAIEDPNSKVAGKGFSQLQNAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +++++ ++ E+ + KIA S D I ++ S IT ++ + Sbjct: 122 EVSVGVLKNKASKLNEVFIKNISEQTPFVIAKIAQSVDGKIALSSGKSKWITCDAARKKG 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R+ DAILVGIGTVLADDP L CRL +P++I+LD + ++SK+++ Sbjct: 182 HEIRSMYDAILVGIGTVLADDPILDCRLAN-NAANPVKIVLDSSAVIPIESKLLQGKGKV 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ T D + +II + +L +LL L G+ S+LVEGGA V S Sbjct: 241 -ILATTAQADKGRLQKLEEMGADIIMTSQNKVNLNELLKALYNSGIYSILVEGGAKVFTS 299 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 F+ L+D +I++ S +IG G L E +F + G D+ L K Sbjct: 300 FLIEGLLDKLIVFLSPKIIGGDGKDYVENLFLREMKDVYDFYIDDAEKVGEDIMLTMYSK 359 >gi|328952293|ref|YP_004369627.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM 11109] gi|328452617|gb|AEB08446.1| riboflavin biosynthesis protein RibD [Desulfobacca acetoxidans DSM 11109] Length = 362 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 187/353 (52%), Gaps = 11/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + VG TS NP V ++V+DG ++GRG G PHAEV+AL +AG +A GA Sbjct: 1 MALALKLAARGVGCTSPNPMVGAVVVRDGYIVGRGYHRRYGGPHAEVEALRQAGSQADGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDRM 129 T YVTLEPC+HYG++PPC + I+ GIRRVV+ DP+ V+G G +L KG ++ + Sbjct: 61 TLYVTLEPCNHYGQTPPCTEAILAAGIRRVVIANSDPNPHVAGGGAAYLQSKGLLVQSGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + G A+ + + K A S D I S ITG ++ VH LR Q Sbjct: 121 LAKAGSRLNEAFFKAMTIGQPFVIAKAAASLDGKIATRTNDSQWITGAPARTWVHRLRHQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAILVG+GTV+ADDP+LT RL Q P+R++LD +L L++K++ AP +V Sbjct: 181 VDAILVGVGTVMADDPQLTTRLPRGQGKDPIRLVLDSRLRLPLNAKVLTQISAAPTWMVC 240 Query: 250 ENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A ++ +I +L+ LL IL R + SLLVEGGA V +F + Sbjct: 241 TPSAPSEKITAIQELGAEVIITPAIENRVELRTLLKILGERRIQSLLVEGGAEVQGAFFD 300 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCL 352 + LVD L+ + IG P L + + G D+ + Sbjct: 301 AGLVDKFHLFLAPKFIGGRQAPGILGGLGASRLAEAQLAHDLSIRRIGEDILI 353 >gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155] gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella baltica OS155] Length = 384 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 190/371 (51%), Gaps = 22/371 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 5 ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L Sbjct: 65 RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229 + V LR +S A++ GI T+L DDP L R L P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + L +LL+ L Sbjct: 245 LPLSAACL--AVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +LVE GA +A +F+ L D ++LY++ ++G G Y M V Sbjct: 302 SCNHVLVEAGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLV 361 Query: 342 RRDYFGSDVCL 352 G D L Sbjct: 362 DERKLGPDTRL 372 >gi|332290249|ref|YP_004421101.1| hypothetical protein UMN179_02191 [Gallibacterium anatis UMN179] gi|330433145|gb|AEC18204.1| conserved hypothetical protein [Gallibacterium anatis UMN179] Length = 372 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 190/369 (51%), Gaps = 19/369 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +FM+ A+ ++ + NP+V C++VK+G ++G+G G PHAEV A+ E Sbjct: 6 FSQQDHQFMALAIELAKKGRFTCTPNPAVGCVLVKNGEIVGKGYHEKAGEPHAEVMAMRE 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYGR+PPCA+ +IE G++RVV + DP+ +V+GRGL+ L+ Sbjct: 66 AGEKANGATAYVTLEPCSHYGRTPPCAKGLIEAGVKRVVAAMQDPNPQVAGRGLKMLADA 125 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +++ + + +L R ++ LK+A+S D MA S ITG ++ Sbjct: 126 GIETAVGLLQQQAEQLNKGFLKRMRTGFPYVQLKMAISIDGRTAMANGESQWITGEAARQ 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RA + AIL TVL D+ L R + P+R+ILD ++ Sbjct: 186 DVQQYRAMASAILSSSKTVLTDNAALNVRWQQLPLEVQSIYPQEKLRQPLRVILDSQHQI 245 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++ +P+++V+ + + + ++ L LL +L + + S+ Sbjct: 246 EPKGRLF--ESESPILLVSPSARNMAHFPAFCQQQQLVESPYY-LTDLLNLLGKQQINSV 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346 VE GA +A + I + LVD +I+Y + ++G+ L+ + Sbjct: 303 WVEAGATLAGALIEAGLVDELIVYIAPKLLGDQAKGLCHLPQLQHLKDAPQWRLADVSLI 362 Query: 347 GSDVCLEYI 355 G DV L YI Sbjct: 363 GDDVKLVYI 371 >gi|18309548|ref|NP_561482.1| riboflavin biosynthesis protein RibD [Clostridium perfringens str. 13] gi|18144225|dbj|BAB80272.1| riboflavin biosynthesis protein [Clostridium perfringens str. 13] Length = 366 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 122/361 (33%), Positives = 187/361 (51%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIKILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + K I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + +F+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|304410191|ref|ZP_07391810.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183] gi|307302098|ref|ZP_07581856.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175] gi|304351600|gb|EFM15999.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183] gi|306914136|gb|EFN44557.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175] Length = 384 Score = 358 bits (920), Expect = 5e-97, Method: Composition-based stats. Identities = 132/372 (35%), Positives = 192/372 (51%), Gaps = 24/372 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 5 ISWSVLDTQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V+GRG+Q L Sbjct: 65 RMAGEHARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + L +LL+ L Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPAEFQAQLLSHVSCLVLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340 +LVE GA +A +F+ L D ++LY++ ++G G +P + Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELMLYQAMKILGGQGRNLLQLPDYKTMAQIPA-LTL 360 Query: 341 VRRDYFGSDVCL 352 V G D L Sbjct: 361 VDERKLGPDTRL 372 >gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187] gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187] Length = 370 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 118/370 (31%), Positives = 191/370 (51%), Gaps = 18/370 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D +MS AL+ + TS NP+V C+IV DG ++G G G PHAEV AL Sbjct: 2 FSAEDHLYMSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV ++DP+ +VSGRG++ L+ Sbjct: 62 AGDKARGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ I +++++ + ++ R ++ LK+A S D +A S IT ++ Sbjct: 122 GVTIQTGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHFKL 230 V RAQS AIL G TVL DDP L R L P+RII+D ++ Sbjct: 182 DVQRWRAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRI 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + ++ + + + ++ + + DL +L+ L R + + Sbjct: 242 VPSAHLF--SIPGEIWLARHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDI 299 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGE---GGIPSPLEEGYLEKN-FMCVRRDYF 346 VE GA++A + +++ LVD +++Y + ++G G + P + E N + Sbjct: 300 WVEAGASLAGALMSAGLVDELMVYLAPKLMGNPARGLVNLPEFKHMSEVNEWQWQDVRKV 359 Query: 347 GSDVCLEYIG 356 G+D+ L Sbjct: 360 GNDLRLTLRP 369 >gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661] gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661] Length = 368 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 117/368 (31%), Positives = 184/368 (50%), Gaps = 18/368 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG+++G G G PHAEV AL AG++ Sbjct: 3 DEIWMARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAYVTLEPCSH+GR+PPC +I G+ RV+ + DP+ V+GRGL L Q GI + Sbjct: 63 AQGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R L P+R+++D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPSLTVRWQDLAADTQAAYAEADLRQPVRVVIDSQNQVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I + + + D + ++ + + D DL L+ +L R + ++ VE Sbjct: 243 RLISQSGE--TWLARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + + + +VD +I+Y + ++G+ + F G D+ Sbjct: 301 GAKLAGALLTAGVVDELIVYMAPKLLGDNARGLCHLPGIAHLADAPAFTFSDSRQVGPDI 360 Query: 351 CLEYIGKN 358 L + Sbjct: 361 RLTLTPDS 368 >gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4] gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus sp. SIP3-4] Length = 368 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 14/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL + Sbjct: 2 FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L + Sbjct: 62 AGNLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +++R +R + KIA S D + S ITG ++ Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++ Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +IV + A + + +++ L LL +L RG+ ++VE G Sbjct: 242 GNA---LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 A + + ++ L+D +ILY + ++G L+ + G D+ Sbjct: 299 ATLNGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIR 358 Query: 352 L 352 L Sbjct: 359 L 359 >gi|240850690|ref|YP_002972090.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup] gi|240267813|gb|ACS51401.1| riboflavin biosynthesis protein ribD [Bartonella grahamii as4aup] Length = 375 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 225/376 (59%), Gaps = 13/376 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55 M D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA G PHA Sbjct: 1 MNKKVQDERFMAAAIRLAERHVGLTGENPSVGTLIVRNDNSAGAFIVGYGVTAIHGSPHA 60 Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 EVQAL AG A+GATAYVTLEPC+HYG++ PC +I+ GI RVVV + D D RV G G Sbjct: 61 EVQALHMAGSLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRVVVALTDCDKRVDGHG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L GI +V+ ++ E L + + +R +T K+A+S DN +G GSV I Sbjct: 121 IALLRAAGIEVVEGILAEEAFESLWTHWCIRKIQRCAVTFKMAISADNGVGKREKGSVKI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 +G +S H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + LD+ Sbjct: 181 SGTLSHAHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEVRSPIRIILDTDLSIPLDA 240 Query: 235 KIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVT 288 K+++TA+ P ++ + D A + +++ + C + LL +L G+ Sbjct: 241 KVVQTAMKIPTWVICDVDLSKKSKKNALEQYGVSVYSVEMNNGCVEPFALLQMLYKYGIN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348 S+L+EGG +F+N+ VD +I + + +++GEG + +P YL + F V FG+ Sbjct: 301 SVLLEGGVKTGETFLNAGCVDHLICFYAPVILGEGRVEAPHFGNYLSQ-FRKVESRMFGN 359 Query: 349 DVCLEYIGKNLCLQEL 364 D ++ K LC Q L Sbjct: 360 DRFYKWRRKALCSQGL 375 >gi|329929844|ref|ZP_08283520.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5] gi|328935822|gb|EGG32283.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. HGF5] Length = 366 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 189/359 (52%), Gaps = 10/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG + Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAKGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 125 Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + + A++ R +TLK A + D I S I+ S+ VH Sbjct: 126 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL G++ P+RII+D ++ LDS ++ L Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRL-GVKGLHPVRIIVDSSLRIPLDSHVVLDGLAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D + + +I C DLK L L +G+ S+L+EGG + S Sbjct: 245 ILTTEQADDTKRTELEELGVQVIPCGPGPRVDLKGALLQLGQKGIASILLEGGGTLNGSM 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + +LVD +I + + +IG P S E+ + + + G ++ + I Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 363 >gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688] gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688] Length = 368 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 124/361 (34%), Positives = 196/361 (54%), Gaps = 14/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M+ ALR + + T+ NP V C+IVKDG ++G G G PHAEV AL + Sbjct: 2 FSALDHQMMARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GA AYVTLEPCSH+GR+PPCA +I+ G++RVV + DP+ +V+G GLQ L + Sbjct: 62 AGDLAQGADAYVTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQ 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +++R +R + KIA S D + S ITG ++ Sbjct: 122 GIAVQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 V RAQS +L GIGTVLADDP+L+ R LQ P+R+I+D H ++S ++I++ Sbjct: 182 DVQHWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 +IV + A + + +++ L LL +L RG+ ++VE G Sbjct: 242 GNA---LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 A + + ++ L+D +ILY + ++G L+ + G D+ Sbjct: 299 ATLNGALLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIR 358 Query: 352 L 352 L Sbjct: 359 L 359 >gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1] gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. W3-18-1] Length = 384 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 198/377 (52%), Gaps = 24/377 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL Sbjct: 5 ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 65 RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L L++ P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 L L + + A+++P+++V+ P A +++ + + L +LL+ L Sbjct: 245 LPLSAACL--AIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340 +LVE GA +A +F+ L D ++LY++ ++G G +P ++ Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360 Query: 341 VRRDYFGSDVCLEYIGK 357 V G D L K Sbjct: 361 VDERKIGPDTRLTLSVK 377 >gi|315646375|ref|ZP_07899493.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453] gi|315278018|gb|EFU41338.1| riboflavin biosynthesis protein RibD [Paenibacillus vortex V453] Length = 366 Score = 358 bits (920), Expect = 6e-97, Method: Composition-based stats. Identities = 124/359 (34%), Positives = 187/359 (52%), Gaps = 10/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C+IVK+G + G G G PHAE+ AL AG + Sbjct: 6 DEFYMSLALDLAERAQGQTGINPVVGCVIVKNGALAGVGTHLERGTPHAEIHALNMAGTK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSHYG +PPC++ +I G++RVVV +DP+ V+G+G+Q L GI V Sbjct: 66 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVKRVVVACEDPNPLVAGKGIQMLRAAGIEV 125 Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + A++ + +TLK A + D I S I+ S+ VH Sbjct: 126 VTGILRERALRLNEAFIKFITTGQPFVTLKTASTLDGKIASKTGDSKWISSEESRELVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL+ H P+RII+D ++ LDS ++ Sbjct: 186 LRHRHQGIMVGVSTVIADNPSLTTRLSVGGLH-PVRIIVDSSLRMPLDSHVVSDGTAPTW 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D ++ I +I C DLK + L G++S+L+EGG + + Sbjct: 245 ILTTEQADEGKRTLLEERGIQVIPCGEGPRVDLKAAIAKLGQMGISSILLEGGGTLNGAM 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS-PLEEGYLEKN----FMCVRRDYFGSDVCLEYIG 356 + +LVD +I + + +IG P + GY + N + G ++ + I Sbjct: 305 LEQKLVDRLIQFIAPKIIGGYDAPGNFMFSGYEQMNQAIVLTGLESKRLGDNIYITGIP 363 >gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301] gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera sp. 301] Length = 370 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 182/362 (50%), Gaps = 12/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +M+ ALR + + T NP V C+IVK+ ++G+G G PHAEV AL E Sbjct: 2 FSIADHTYMTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALRE 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GA AYVTLEPC+H+GR+PPC +I ++RVVV + DP+ V+G G++ L Sbjct: 62 AGANAEGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAH 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME+E K +++R ++ K+A S D + S+ ITG ++ Sbjct: 122 GIEVEVGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARL 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA- 240 V RAQS AI+ GIGTVL D+P + RL P+R+I+D + + D K++ Sbjct: 182 DVQHWRAQSCAIVTGIGTVLTDNPSMNVRLEN-TGRQPLRVIVDSNLQTPTDCKMLNPEL 240 Query: 241 -LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295 L+PV++ D A A +++ +L LL L R V +L+E G Sbjct: 241 LSLSPVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAG 300 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + +F+ + LVD I Y + ++G S L E + G D+ Sbjct: 301 QGLNGAFLQAGLVDEFIFYYAPKLMGADAKGMFAISELIEMQQATDLQIFDVRQIGQDIR 360 Query: 352 LE 353 + Sbjct: 361 VR 362 >gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium 9_2_54FAA] Length = 373 Score = 358 bits (919), Expect = 7e-97, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 184/365 (50%), Gaps = 18/365 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV + ++G G G PHAEV AL AG++ Sbjct: 8 DEFYMARAFELARRGRFTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMAGDK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 68 ARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R + LK+A S D MA S IT S+ V Sbjct: 128 SHGLMMNEAEAVNRGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQR 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L P+R+I+D +++ + Sbjct: 188 YRAQSSAILSSSATVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEH 247 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I A ++ + D + K+ Y DL L+ L + S+ VE Sbjct: 248 KLISQAGE--TLLARIHPDDLHWPENVKQLAIPQYGQGIDLVVLMMQLGKLQINSVWVEA 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDV 350 GA++A + + + LVD +I+Y + ++G+ + LE+ F+ G D+ Sbjct: 306 GASLAGALLQAGLVDELIIYLAPKLLGDAARGLCVLPGLEQLADAPQFVFSEVMPVGPDL 365 Query: 351 CLEYI 355 + Sbjct: 366 RIVLR 370 >gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4] gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella loihica PV-4] Length = 386 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 195/373 (52%), Gaps = 22/373 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S FD++ M+ A++ +R TS NP+V C+IV+ ++G G G PHAEV AL Sbjct: 5 MAWSKFDSQMMARAIKLARKGQYTTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVVV V DP+ +VSGRG++ L Sbjct: 65 RMAGDKAKGATAYVTLEPCSHYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQ 124 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + + E ++ R + +K+A S D ++ S ITG + Sbjct: 125 DAGILVEVGLHQEEAAALNPGFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229 + V +RA+ DA++ GI TVLADDP L R L P+R++LD + Sbjct: 185 RRDVQRMRARFDAVVTGIETVLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 L +K+ +T +PV++V+ P + + ++ + + LK LL L Sbjct: 245 LGAKAKLFET--QSPVLLVSCQPYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGS- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCV 341 + S++VE GA +A +F+ L D ++LY++ ++G G Y E Sbjct: 302 QLNSVMVEAGATLAGAFMAQGLADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLC 361 Query: 342 RRDYFGSDVCLEY 354 G+D L + Sbjct: 362 DERAIGADRRLTF 374 >gi|168214536|ref|ZP_02640161.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE str. F4969] gi|170714018|gb|EDT26200.1| riboflavin biosynthesis protein RibD [Clostridium perfringens CPE str. F4969] Length = 366 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 121/361 (33%), Positives = 185/361 (51%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+G++ L + GI Sbjct: 61 SIEGATIYVTLEPCCHYGKTPPCVEAIIKNKFKRVVVGTLDPNPLVSGKGIRILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S T S+ VH Sbjct: 121 VNVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWTTNKKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + K I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKMKNEKLKDKGIEVIEVNLDEGKININQVLACLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + SF+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFSFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDEDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia frederiksenii ATCC 33641] gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia frederiksenii ATCC 33641] Length = 369 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPSLTVRWQELDTETQARYPQDTLRQPTRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ + D A ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQE--GTCWLARVEADEQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFEFSDVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens CN-32] gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella putrefaciens CN-32] Length = 384 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 196/377 (51%), Gaps = 24/377 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + S+ D + MS A++ +R T NPSV C+IVKD +IG G G PHAEV AL Sbjct: 5 ITWSALDIQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 65 RMAGERARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG S Sbjct: 125 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPES 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEH-------SPMRIILDPHFK 229 + V LR +S A++ GI T+LADDP L R L L++ P+R+ILD + Sbjct: 185 RRDVQRLRLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRAR 244 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGR 285 L L + A+++P+++V+ P A +++ + L +LL+ L Sbjct: 245 LPLS--VACLAIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYLGQ- 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMC 340 +LVE GA +A +F+ L D ++LY++ ++G G +P ++ Sbjct: 302 SCNHVLVEAGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPA-LTL 360 Query: 341 VRRDYFGSDVCLEYIGK 357 V G D L K Sbjct: 361 VDERKLGPDTRLTLSVK 377 >gi|300813870|ref|ZP_07094175.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512057|gb|EFK39252.1| riboflavin biosynthesis protein RibD [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 372 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 17/364 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE Sbjct: 10 YMSLAMELAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAKKNGES 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L GI + Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+++AI+VGIGTVL DDP L R+ G +P +I++D ++ LD+K++ ++ + Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248 Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I TE D ++ N++I+ C + DL L + L + S+L+EGG + + Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILVCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE-Y 354 S + LVD +I + +IG G+ SP+ + ++ F G D+ + Y Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGL-SPVAGEGITLMKDAIKIKDFQVEKMGQDILINAY 367 Query: 355 IGKN 358 + K Sbjct: 368 VDKE 371 >gi|237743881|ref|ZP_04574362.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 7_1] gi|229432912|gb|EEO43124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 7_1] Length = 370 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 199/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ A+ ++ G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 NSDEKYMARAIELAKRGTGSVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLE CSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 64 ENAKGATIYVTLESCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGMKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 124 EVKFGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P RI++DP+ + +++K + Sbjct: 184 QFLRTKFMAIMVGINTVLKDNPSLDSRLDEKKFGIEKRNPFRIVVDPNLESPIEAKFLNF 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295 IIVT ND+ L KN+ I+ + + +K +L L + S+L+EGG Sbjct: 244 N-DGKAIIVTSNDNRELEKIKEYKNLGTRFIFLEGKIFKMKDILKELGKLEIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++++ ++ + +IG+ P G+ N V + + +G + Sbjct: 303 SGLISTAFKENIINAGEIFIAPKIIGDNSA-IPFINGFNFDNMEDVFKLPNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|228940450|ref|ZP_04103019.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228979928|ref|ZP_04140248.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407] gi|228779807|gb|EEM28054.1| Riboflavin biosynthesis protein [Bacillus thuringiensis Bt407] gi|228819215|gb|EEM65271.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 348 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARGAT YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGATIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 YGR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 YGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+RIILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L++ +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEILDVLGQKGVSSLLIEGGGEVNASFIENKLMNKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS + + K + D+ +GK+ Sbjct: 300 KIIGGRLAPSFVGGTGITKMQDAIEFK----DISFTQVGKD 336 >gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC 43325] gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC 43325] Length = 377 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 197/370 (53%), Gaps = 19/370 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ DA FM AL ++ T+ NPSV C++VKDG ++G+G G PHAEV AL + Sbjct: 4 FSAQDAVFMQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMALRD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ RVV + DP+ +V+G+GLQ L+++ Sbjct: 64 AGEQAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQMLAEQ 123 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + E + +L R + + LK+A+S D +A S IT +S+ Sbjct: 124 GIESAVGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSELSRQ 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V + RA++ AIL TV+ADDP L R L + P+R+ILD ++ Sbjct: 184 DVQVERAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQYKHENLRQPIRVILDSQNQV 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++ + +PV V++++ + + I I+ L L+ L R + +L Sbjct: 244 QPTQRLFQVD--SPVWFVSKSERDLSGYPQSCEQI-ILEDKAEYLHNLMLELGKRQINTL 300 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDYF 346 +E GA +A + I + LVD +I+Y + ++G+ P L + + + Sbjct: 301 WIEAGATLAGALIEANLVDELIIYTAPKLLGDEARGLCKLPHLNKLADASQWKLHSIERI 360 Query: 347 GSDVCLEYIG 356 G DV Y Sbjct: 361 GDDVKSIYHP 370 >gi|22299695|ref|NP_682942.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus BP-1] gi|22295879|dbj|BAC09704.1| riboflavin biosynthesis protein [Thermosynechococcus elongatus BP-1] Length = 379 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 108/363 (29%), Positives = 190/363 (52%), Gaps = 13/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ DA++M L + G T+ NP V C+IV +G VIG G G PHAEV AL Sbjct: 10 IATIDAQYMGRCLELAARAKGRTAPNPLVGCVIVAEGRVIGEGFHPKAGEPHAEVFALRS 69 Query: 63 AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E R AT YV LEPC+HYGR+PPC + I+ GI +VVV + DP+ +V+G G++ Sbjct: 70 VSESDRPLLSKATLYVNLEPCNHYGRTPPCTEAILAAGIPKVVVGMIDPNPQVAGAGVER 129 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + E++ + A++ R +R LK A++ D I S+ ++G Sbjct: 130 LRSAGIEVTVGVREADCQRLNEAFVHRVRYQRPFGILKYAMTLDGKIASRAGHSLWVSGE 189 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH LR++ DA++VG TV D+P LT R H+P+R+++ L D+ + Sbjct: 190 AARAMVHQLRSECDAVIVGGNTVRLDNPLLTSRH----GHNPLRVVMSRTLDLPPDASLW 245 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 T A +++ + + L + + + +++ + ++ +L RG+ + L E G + Sbjct: 246 DTTAAATLVVTSASPQHPLIPQLQARGVEVVHREPLTPTAVMALLHQRGIMTALWECGGS 305 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A + I +V + + + +IG P+P+ + L K + + DV + +G+ Sbjct: 306 LAAAAIAEGMVQKVWAFIAPKIIGGFDAPTPVADLGLTKMHEAL----YLEDVTWQTVGE 361 Query: 358 NLC 360 ++ Sbjct: 362 DIL 364 >gi|182626736|ref|ZP_02954476.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D str. JGS1721] gi|177907904|gb|EDT70496.1| riboflavin biosynthesis protein RibD [Clostridium perfringens D str. JGS1721] Length = 366 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 185/361 (51%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVKDG +IG+G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKDGEIIGQGYHEFFGGNHAEINAINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ +RVVV DP+ VSG+ ++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNRFKRVVVGNLDPNPLVSGKSIKILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKDFKSKWITNKKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + +F+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGVSNVLDAFEFPEVNLKNFDKDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylaminouracil reductase [Neisseria lactamica ST-640] gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylaminouracil reductase [Neisseria lactamica 020-06] Length = 369 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 190/365 (52%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I + G ++G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E ++ L ++ I+ DL +L+ +L G ++VE GA Sbjct: 241 SPTYIATLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 KLASAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRTALSAPPLWTPVSTEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|261405997|ref|YP_003242238.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10] gi|261282460|gb|ACX64431.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. Y412MC10] Length = 369 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 127/359 (35%), Positives = 187/359 (52%), Gaps = 10/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL + G T NP V C++VKDG + G G G PHAEV AL AG + Sbjct: 9 DEFYMSLALDLAERAQGQTGINPVVGCVVVKDGALAGVGTHLERGTPHAEVHALNMAGPK 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G+T YVTLEPCSHYG +PPC++ +I G+RRVVV +DP+ V+GRG+Q L GI V Sbjct: 69 AAGSTVYVTLEPCSHYGATPPCSERLIAEGVRRVVVACEDPNPLVAGRGIQMLRAAGIEV 128 Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + + A++ R +TLK A + D I S I+ S+ VH Sbjct: 129 ETGILKDRALRLNEAFVKFITTGRPFVTLKTASTLDGKIASKTGDSKWISNEKSRELVHT 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+AD+P LT RL G++ P+RII+D ++ LDS ++ L Sbjct: 189 LRHRHQGIMVGVSTVIADNPSLTTRL-GVEGLHPVRIIVDSSLRIPLDSHVVSDGLAPTW 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE D + + C DLK L L +G+ S+L+EGG + S Sbjct: 248 ILATEQADDTKRSELEELGAQVFPCGPGPRVDLKVALLQLGQKGIASILLEGGGTLNGSM 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + +LVD +I + + +IG P S E+ + + + G ++ + I Sbjct: 308 LEQKLVDRLIQFIAPKIIGGYDAPGNYMFSGYEQMNQAISLTGLETERLGDNIYVTGIP 366 >gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica T6c] gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas atlantica T6c] Length = 372 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 118/366 (32%), Positives = 192/366 (52%), Gaps = 18/366 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 S+ DA+ M+ A+R + TS NP+V C+I G ++G+G G PHAE+ A+ Sbjct: 4 FSALDAKMMALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIHAIA 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE +GATAYVTLEPC+H+GR+ PC++ +++ G++RVV + DP+ V+G GLQ LS Sbjct: 64 QAGERTKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQKLSD 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++ESE K ++ R + +T+K+A S D + S ITG +++ Sbjct: 124 AGVQVSSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGPLAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKL 230 V RAQS AIL G GTVLAD+P L R L + P+R++LD ++ Sbjct: 184 EDVQRHRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGRNQM 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 D + AL +P++I+ + ++ DL+ ++ L RG + Sbjct: 244 RPDLHLF--ALSSPIVIINSQPNTAEFPDHVEQYQAQSNGAQLDLQDVMKHLGQRGFNHI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346 VE GA +A + + ++L+D +ILY++ ++G+ G L + Sbjct: 302 WVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQV 361 Query: 347 GSDVCL 352 G D+ L Sbjct: 362 GPDLKL 367 >gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 367 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 124/364 (34%), Positives = 183/364 (50%), Gaps = 18/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M + + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMQDAEAINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP +T R N L P+RI++D +++ + Sbjct: 182 HLRAQSHAILTSSETVLADDPAMTVRWNELNADTQALYPQENLRQPLRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I +D + + + DL L+ +L + V S+ VE Sbjct: 242 HRIVQQPGE--TWIARTKEDSRDWPESVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G + G G D Sbjct: 300 AGPTLAGALLQAGLVDELIVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPD 359 Query: 350 VCLE 353 VCL Sbjct: 360 VCLH 363 >gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus TK-6] Length = 361 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 196/359 (54%), Gaps = 9/359 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM AL ++ GLT NP+V C+IVKDG +I G G PHAE ALE+ Sbjct: 2 MRETDHHFMRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEK 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A G+T YVTLEPC+HYGR+PPC II ++RVV+ DP+ VSGRG+Q L Sbjct: 62 AGTQAEGSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + + T +KR +ITLK+A S D I S IT S+ Sbjct: 122 GIDVCVGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRT 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRAQ+ A+LVGI TVL DDP LT R E P+R++LDP+ ++ + SK+++ Sbjct: 182 FAHRLRAQATAVLVGINTVLRDDPSLTVRHIPW-ESQPIRVVLDPNLRIPITSKLVR-EK 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A +I+T +++ + I ++ + L+++L L + LLVEGGA Sbjct: 240 TAKTLIITASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQ 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEY 354 SFI L D + ++ + I+IGEG + L K M FG DV LEY Sbjct: 300 TITSFIKEDLYDRLFIFLAPILIGEGIGIGDIGTSKLLDAKRHMLKSIYRFGDDVGLEY 358 >gi|254303903|ref|ZP_04971261.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5- phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324095|gb|EDK89345.1| diaminohydroxyphosphoribosylaminopyrimidine/5-amino-6-(5- phosphoribosylamino)uracil reductase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 369 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 114/363 (31%), Positives = 195/363 (53%), Gaps = 15/363 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V ++VKDG +IG G G PHAEV AL EAGE Sbjct: 5 LDEKYMARAIELAQKGIGGVNPNPLVGAVVVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCARRIVEAGIKRCVVACIDPNPLVAGKGMKIIEEAGID 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 125 IKLGVLEKEAKDVNKIFLKYIENKVPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244 Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296 IIVT +D+ + K I+ + + K +L L + S+L+EGG+ Sbjct: 245 DN-KAIIVTSSDNKNLEKIKVYEKLGTKFIFLEGKTFKMEDILKELGKLEIDSVLLEGGS 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351 + + ++D+ ++ + +IG+ + + F + + +G ++ Sbjct: 304 ELISTAFKENIIDAGEIFIAPKIIGDNSAVPFINGFNFDSMEDVFKFSNPKFNIYGDNIS 363 Query: 352 LEY 354 +E+ Sbjct: 364 IEF 366 >gi|229110810|ref|ZP_04240373.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15] gi|228672689|gb|EEL27970.1| Riboflavin biosynthesis protein [Bacillus cereus Rock1-15] Length = 348 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 121/341 (35%), Positives = 185/341 (54%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ RGAT YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQVRGATIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKVNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+RIILD ++ +++ ++ I T N +A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWIFTTSNHAAKKKIAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKLILYVAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + DV +GK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DVSFTQVGKD 336 >gi|251796359|ref|YP_003011090.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2] gi|247543985|gb|ACT01004.1| riboflavin biosynthesis protein RibD [Paenibacillus sp. JDR-2] Length = 368 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 198/359 (55%), Gaps = 9/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ +MS AL + G T NP V C++VKDG +IG G G HAEV AL+ AG+E Sbjct: 6 DSYYMSLALELAAKASGQTGINPVVGCVVVKDGRIIGVGTHLKRGTGHAEVHALQMAGDE 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPCSHYG++PPC + II RVVV DP+ +V+GRG+ L ++GI + Sbjct: 66 AEGATVYVTLEPCSHYGKTPPCCERIINAKAARVVVATTDPNPQVAGRGIARLREEGIEV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + + + + ++TLK A + D I S ITG ++ QVH Sbjct: 126 EVGLLEEQSRSMNEKFNKYITSRLPYVTLKTASTLDGKIASHTGDSRWITGSTAREQVHT 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR Q +AI+VGIGT+LADDP+LT R H P+RII+D +L LD++++ L + Sbjct: 186 LRHQHEAIMVGIGTLLADDPQLTTRAAVPAIH-PVRIIVDSQLRLPLDARVVTDGLARTI 244 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ + DP A + + +I C + L + + L + S+L+EGG + + Sbjct: 245 VLASAKADPSREQALTEAGVEVIRCGDGEQVVLAEAMRKLGELEIGSILLEGGGKLNGAM 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + + L+D I++Y + +IG P EK + D+ V +E G+++C+ Sbjct: 305 LEAGLIDKIMIYMAVKIIGGLDSPGTFTFAGFEKMSEAIELDH----VKVEMAGEDICI 359 >gi|76798747|ref|ZP_00780965.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 18RS21] gi|76585902|gb|EAO62442.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae 18RS21] Length = 362 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+ Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + + Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E ++ K+ + LK A++ D I S I+ S+ V LR + Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P I T Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + + Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALKA 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351 >gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586] gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586] Length = 370 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 66 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 QHGVLMDQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L P+R+I+D +++ Sbjct: 186 FRAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQH 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +++ + + D ++ ++ DL L+ L R + ++ VE Sbjct: 246 RLVSQPGQ--TWLARASQDAQSWPDGVEQLTMPLHGGGIDLVALMMTLGKRQINTVWVEA 303 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + + + +VD +I+Y + ++G+ LE+ F G DV Sbjct: 304 GAHLAGALLQAGVVDELIVYLAPTLLGDAARSLCVLPGLEQLSQAPMFEMTDVRQIGPDV 363 Query: 351 CLEYIGK 357 L + Sbjct: 364 RLTLKPR 370 >gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330] Length = 360 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 187/358 (52%), Gaps = 12/358 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D + M AL + TS NP V C+I +IG+G G PHAEV A+ Sbjct: 3 TFNPQDTQHMQRALELAWQGRFSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L Sbjct: 63 QAGELARGATAYVTLEPCSHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQA 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E + +L+R R ++LKIA S D ++ S ITG ++ Sbjct: 123 AGIMVEQGLLEHEARQLNRGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V + RAQS A+L GIGTVLAD+P L R + P+R++LD + S II+ Sbjct: 183 ADVQIQRAQSCAVLTGIGTVLADNPRLNVR-DFPTVRQPLRVVLDSQLRTPKSSHIIQDG 241 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I + P N+ I L ++L L RG+ L++E G+ +A Sbjct: 242 QRTLIITTS----PDTQKFATYANVEISKQPAPISLPEVLHELAQRGIGELMIEAGSHLA 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN--FMCVRRDYFGSDVCL 352 +F+ L+D I+ Y++ ++G+ + P + L +N + V D G D+ Sbjct: 298 SAFLQQDLLDEIVYYQAPKLLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDIKW 355 >gi|170717790|ref|YP_001784854.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336] gi|168825919|gb|ACA31290.1| riboflavin biosynthesis protein RibD [Haemophilus somnus 2336] Length = 376 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 21/371 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL Sbjct: 4 TFSAQDEYFMQIALDLAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L Sbjct: 64 DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123 Query: 122 KGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + E +LTR ++ + LK+A+S D MA S I+G ++ Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RA+ AIL TVLADDP L R P+RIILD Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEDVRQPVRIILDRQHL 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288 ++ K+ + +PV +V + + + A + I + + L+ LL L R + Sbjct: 244 VTPRHKLFQ--CQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQIN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343 SL +E G +A +FI LV+ +I+Y + ++G +P L+ + + Sbjct: 302 SLWLEAGETLAGAFIEENLVNELIIYMAPKLLGNKARGFCHLPH-LKRLADAPKWQLLSL 360 Query: 344 DYFGSDVCLEY 354 G D+ L Y Sbjct: 361 AQIGEDIKLNY 371 >gi|227821532|ref|YP_002825502.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234] gi|227340531|gb|ACP24749.1| riboflavin biosynthesis protein RibD [Sinorhizobium fredii NGR234] Length = 367 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 181/363 (49%), Positives = 238/363 (65%), Gaps = 3/363 (0%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D RFM+AALR +R ++GLTSTNPSV C+IVKD ++GR VTA GG PHAE QAL +A Sbjct: 5 TREDERFMAAALRLARRNLGLTSTNPSVGCVIVKDDTIVGRAVTAPGGRPHAETQALADA 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ARGATAYVTLEPCSH+GR+PPC +I GI RVVVC+ DPD RV+GRG+ L G Sbjct: 65 GEQARGATAYVTLEPCSHHGRTPPCVDALIASGIARVVVCLLDPDERVAGRGVVMLRDAG 124 Query: 124 IIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I VD ++ EG+ L AYL RQ KR H+TLK+AVS D MIG G G V ITG +S+ Q Sbjct: 125 IDVDLGVLRDEGERVLEAYLMRQRMKRPHVTLKLAVSADGMIGRKGEGQVRITGAVSRAQ 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V +LRA++DAILVG+GT ADDPELT RL GL+ SP+RI+LD L+++SK++++A Sbjct: 185 VQVLRAETDAILVGVGTANADDPELTVRLPGLEARSPIRIVLDRRLDLAVESKLVRSARA 244 Query: 243 APVIIVTEN--DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V ++ D P + + + + + LL L RG++SLLVEGGA A Sbjct: 245 VLSFAVADSVLDAPAMTRRSTLEEAGVEVLNADTIYDLLIALASRGISSLLVEGGARAAR 304 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 F+++ LVD I+LY IGE GI SP + + F R +G+D+ +Y + C Sbjct: 305 QFLDAGLVDRILLYTGPATIGEDGIRSPFDRMTVPAGFSLKRTARYGNDIFDDYERDSGC 364 Query: 361 LQE 363 Q Sbjct: 365 SQA 367 >gi|77409347|ref|ZP_00786049.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae COH1] gi|77172049|gb|EAO75216.1| riboflavin biosynthesis protein RibD [Streptococcus agalactiae COH1] Length = 362 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 187/353 (52%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ + +G + NP V +IVKD +I +G G HAE QA++ A E+ G+ Sbjct: 1 MALALKEAEKGMGFVAPNPLVGAVIVKDDRIISKGYHKRFGDLHAERQAIKNADEDISGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H G+ PPC + +I+ GI++VVV DP+ VSG+G+ L ++G+ + + Sbjct: 61 TLYVTLEPCCHVGKQPPCTEALIKSGIKKVVVGSLDPNPLVSGKGIALLRKEGLNVEVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E ++ K+ + LK A++ D I S I+ S+ V LR + Sbjct: 121 LREECDALNERFIFHMTYKQPFVYLKYAMTLDGKIATKTGDSKWISNEHSRQSVQKLRQK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VGI TVLAD+P LTCR+ + +RI+ D K+ LDS ++K+A P I T Sbjct: 181 CSAIMVGINTVLADNPRLTCRIPKGEAL--VRIVCDSQLKIPLDSYLVKSAKTIPTWIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D+ ++ +I + DLK L+TIL G+ SLL+EGG+++ S + + Sbjct: 239 CSDNLAQQQTLKEMGCRLIKVPRKDGKLDLKVLMTILGQEGIDSLLIEGGSSLHFSALEA 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLE 353 +V+ +I++ + +IG + + L+ + SDV +E Sbjct: 299 GIVNRLIVFIAPKIIGGLKAKTAISGEGLDWLNQAFRVKDIELSRMDSDVVIE 351 >gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Serratia proteamaculans 568] gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568] Length = 369 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G+ + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L P+RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRENLRQPLRIILDSQNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++++ + D + ++ + DL ++ L R V S+ VE Sbjct: 244 RVVQQPGQ--TWLARLQPDEQIWPQDVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + + + LVD +ILY + ++G+ G LE F+ G D+ Sbjct: 302 GAQLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEHLTDAPEFVFSEVRQIGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKAK 368 >gi|148380824|ref|YP_001255365.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 3502] gi|153933315|ref|YP_001385131.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 19397] gi|153935215|ref|YP_001388600.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. Hall] gi|148290308|emb|CAL84432.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium botulinum A str. ATCC 3502] gi|152929359|gb|ABS34859.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. ATCC 19397] gi|152931129|gb|ABS36628.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A str. Hall] Length = 365 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G + NP V ++V + +IG G Y G PHAEV AL+EAGE+A+ Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVNNNKIIGEGYHKYFGGPHAEVYALKEAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI ++ Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVIT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +VH +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATKTGESKWITGEEARYKVHQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGIGT++ D+P L R+ + SP II+D ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIGTIIKDNPLLNTRIE--RGRSPKAIIVDSSLRIPLESKILETLNERTIYI 243 Query: 248 VTENDDP--VLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 T A ++ + + L +L+ L GV S+L+EGG+ + Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361 >gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913] gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913] Length = 375 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 182/371 (49%), Gaps = 18/371 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D R+M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL Sbjct: 6 SFSEDDKRYMARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNALT 65 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE A+GATAYVTLEPCSHYGR+PPCA+ + G+++V+ + D + +V+G+GL+ L+ Sbjct: 66 MAGENAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILAD 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E++ + + R + +T K+A S D + S ITG ++ Sbjct: 126 AGIEVAYGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAAR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSL 232 V L RAQS AIL G TVL DD +L R L P+R+++D +L+ Sbjct: 186 QDVQLYRAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTP 245 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291 D + ++ + VII T D K I + + + DL +L L ++ Sbjct: 246 DLALF--SIQSEVIIFTTKVDKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVW 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346 +E GA +A L+D + Y + ++G S L L N Sbjct: 304 LEAGATLAGKMTELDLIDEFVFYIAPKLMGSD-AKSLLNFPELMSMQNTINLTFNECVPI 362 Query: 347 GSDVCLEYIGK 357 G D+ + + K Sbjct: 363 GDDLRITALKK 373 >gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. MR-7] gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. MR-7] Length = 381 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 191/374 (51%), Gaps = 22/374 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLADDP L R L+ Q P+R+ILD + Sbjct: 181 RRDVQRLRIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 + + + ++ A+ +P+++V+ +A ++ + D L LL+ L + Sbjct: 241 MPIKAALL--AIESPILLVSTEPYSPAFMAQLPSHVTCLQLPAIDGRISLPTLLSYLG-K 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +L+E GA +A +FI + L D ++LY++ V+G G Y V Sbjct: 298 SCNQVLIEAGATLAGAFIGAGLADELVLYQAMKVLGAQGRNLLELPDYQMMADIPTLKLV 357 Query: 342 RRDYFGSDVCLEYI 355 G+D Sbjct: 358 DERKVGADTRFTLR 371 >gi|282883344|ref|ZP_06291938.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis 315-B] gi|281296848|gb|EFA89350.1| riboflavin biosynthesis protein RibD [Peptoniphilus lacrimalis 315-B] Length = 372 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 198/364 (54%), Gaps = 17/364 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 +MS A+ + G T TNP V C+IV D +IGRG G HAE A+E+A GE Sbjct: 10 YMSLAMDLAEKGKGFTLTNPMVGCVIVNDDRIIGRGYHKKFGDLHAETMAIEDAQKNGES 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G+T YV LEPC HYG+ PPC + IIE I++VV+ DP+ +VSG+G++ L GI + Sbjct: 70 LEGSTLYVNLEPCCHYGKQPPCTKAIIENKIKKVVIANVDPNKKVSGKGIKTLEDAGIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ +ME EG + +R +T+K A++ D I S I+ IS++ VH Sbjct: 130 VEGIMEEEGLKLNEEFFHFIKTQRPFVTMKSAMTLDGKIASVTGDSKWISSQISRDYVHK 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+++AI+VGIGTVL DDP L R+ G +P +I++D ++ LD+K++ ++ + Sbjct: 190 LRAENNAIMVGIGTVLKDDPSLNVRIYG-NYKNPTKILVDSKLRIPLDAKLLSSSDAPTI 248 Query: 246 IIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I TE D ++ N++I+ C + DL L + L + S+L+EGG + + Sbjct: 249 IACTEGYDTEKYNKLKEMANVHILLCKKKDGRVDLLDLFSKLKDFDICSVLLEGGGNLNY 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE-Y 354 S + LVD +I + +IG G+ SP+ + ++ F G D+ + Y Sbjct: 309 SMLRENLVDRLIFFIGPKIIGGSGL-SPVAGEGISLMKDAIKIKDFQVEKMGQDILINAY 367 Query: 355 IGKN 358 + K Sbjct: 368 VDKE 371 >gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. MR-4] gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella sp. MR-4] Length = 381 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 190/374 (50%), Gaps = 22/374 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLADDP L R L+ Q P+R+ILD + Sbjct: 181 RRDVQRLRLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 + + + ++ A+ +P+++V+ +A ++ + D L LL+ L + Sbjct: 241 MPITAALL--AIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLG-K 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +L+E GA +A +FI L D ++LY++ ++G G Y V Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLV 357 Query: 342 RRDYFGSDVCLEYI 355 G+D Sbjct: 358 DERKVGADTRFTLR 371 >gi|226314399|ref|YP_002774295.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC 100599] gi|226097349|dbj|BAH45791.1| riboflavin biosynthesis protein RibD [Brevibacillus brevis NBRC 100599] Length = 368 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 133/357 (37%), Positives = 194/357 (54%), Gaps = 7/357 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D+++M AL +R G TS NP V +IVKDG ++G G G PHAEV AL AG Sbjct: 2 EQDSKYMDLALELARSARGQTSPNPMVGAVIVKDGTIVGMGAHLRAGEPHAEVHALRMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A+GAT YVTLEPCSHYG++PPCA+ +I +RRVVV DP+ V+GRG++ L G+ Sbjct: 62 EKAQGATVYVTLEPCSHYGKTPPCAEALIAAAVRRVVVATLDPNPLVAGRGMEMLRAAGV 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E E K + +R +T+K A + D I S ITG ++ +V Sbjct: 122 EVAVGVREEEAKALNEVFFHYIQTRRPFVTVKTASTLDGKIASFTGHSRWITGAEARAEV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR Q DAILVG+GT+LADDP LT R + P+R+ILD + LD+ +++ A Sbjct: 182 HELRRQHDAILVGVGTILADDPLLTARQEEQRFGSQPVRVILDSQLRTPLDAHVVQNADA 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T+ + + +I ++K+L L G+TSLLVEGG V S Sbjct: 242 KTWIFATDTAPKEKQELLAARGVKVITTAGPIRVEKVLDTLGELGITSLLVEGGQEVNGS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+ +R + ++ + + +IG PSP + F + ++V + IGK+ Sbjct: 302 FLQARAIQKVVSHIALKLIGGSSAPSPFGG----QGFSTMGEAVQLANVTITPIGKS 354 >gi|294783803|ref|ZP_06749125.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA] gi|294479615|gb|EFG27394.1| riboflavin biosynthesis protein RibD [Fusobacterium sp. 1_1_41FAA] Length = 369 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 198/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 TVDEKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + GI Sbjct: 64 EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACVDPNPLVAGKGIKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT +++ +V Sbjct: 124 KVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNELAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +DSK + Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGG 295 IIVT ND+ + +IY + + K +L L + S+L+EGG Sbjct: 244 NDN-KAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMEDILKELGKLNIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++D+ ++ + +IG+ P G+ + V + + +G + Sbjct: 303 SGLISTAFKENVIDAGEIFIAPKIIGD-NSSIPFISGFNFNSMEEVFKLSNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|149179738|ref|ZP_01858243.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1] gi|148851930|gb|EDL66075.1| riboflavin biosynthesis protein RibD [Bacillus sp. SG-1] Length = 363 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 172/355 (48%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G T+ NP+V ++VKDG ++G G G PHAEV A+ +AG Sbjct: 2 QEQEYMKLALSLAKAGKGQTAPNPAVGAVVVKDGEIVGMGAHLKAGDPHAEVHAIRQAGS 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GA YVTLEPC+H G++PPCA I+E ++RV + DP+ V+G+G+ L + GI Sbjct: 62 KAEGADIYVTLEPCAHTGKTPPCANLIVENKLKRVFIASVDPNPLVAGKGIDILERAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E E + K ++TLK AV+ D S IT S+ VH Sbjct: 122 VVTGICEKEALELNAHFFHFIQTKTPYVTLKSAVTLDGKTAAYTGDSKWITSEESRLDVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R DAILVG+ TV+ D+P LT RL +P+R++LD H ++ L+S I+ Sbjct: 182 KYRHHHDAILVGVNTVINDNPLLTTRLP-RGGKNPIRVVLDSHLRIPLESDILNIEHAKT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSF 302 +I K + + + L +L L VTSL VEGG+A+ SF Sbjct: 241 IIFCGSEASEEKKGMLLNKGVRVEQLESPKLPVKMVLQRLGELNVTSLFVEGGSAIHFSF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + + +++Y + ++G + + G D+ + Sbjct: 301 LKEKAYQEVVIYMAPKLVGGSEAFTSFGGHGFPSIAEGDELEFSSIEKIGKDIKI 355 >gi|319407322|emb|CBI80963.1| Riboflavin biosynthesis protein ribD [Bartonella sp. 1-1C] Length = 374 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 157/374 (41%), Positives = 225/374 (60%), Gaps = 12/374 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MDKAEQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKGAGASIVGYGVTALQGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG A GATAYVTLEPCSHYG + PC +I GI RVV+ + DPD RV G G+ Sbjct: 61 VQALLMAGPLAYGATAYVTLEPCSHYGETSPCVNALINSGITRVVIALSDPDQRVYGCGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG G GSV I+ Sbjct: 121 ALLRAAGIEVVEGVLADEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKGSVRIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL+ SP+R+ILD ++ L +K Sbjct: 181 GEISRTQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLEIRSPIRVILDKDLRIPLCAK 240 Query: 236 IIKTALLAPVIIV--TENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +++TA P ++ T + +A + + I + + +L +L R + S Sbjct: 241 VVQTAANIPTWVICSTASSKKRKKIALEQCGVTICSVNTNNNLLSPFAILQLLYQRKINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+++ VD +I + + I++G+ I +P + YL + F V G+D Sbjct: 301 VLLEGGAKTGKIFLDAGCVDCLICFYAPILLGKDRIKAPHFQSYLSE-FNEVEMRMLGND 359 Query: 350 VCLEYIGKNLCLQE 363 ++ K LC Q Sbjct: 360 RLYKWRRKILCSQG 373 >gi|170760325|ref|YP_001788192.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str. Loch Maree] gi|169407314|gb|ACA55725.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A3 str. Loch Maree] Length = 365 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 120/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EA E+A+ Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREASEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT Y+TLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATMYITLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++++V +R Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGI TV+ DDP LT R+ G SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETLSKRAIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 T +P A ++ + L KL+ L GV S+L+EGG+ + Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMQYLGSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD I+ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIE 361 >gi|187932958|ref|YP_001885493.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str. Eklund 17B] gi|187721111|gb|ACD22332.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B str. Eklund 17B] Length = 378 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 113/367 (30%), Positives = 186/367 (50%), Gaps = 11/367 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 VS + +M AL ++ +G + NP V +IVKD +IG G Y G HAEV A+ Sbjct: 12 KVSLVNEEYMDLALELAKKGIGKVNPNPLVGAVIVKDNEIIGTGYHEYYGGAHAEVDAIN 71 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + G+T Y+TLEPC+HYG++PPC IIE I++VV+ + DP+ VSG+ ++ L + Sbjct: 72 NTTKSLEGSTIYITLEPCAHYGKTPPCVNLIIEKKIKKVVIGMLDPNPMVSGKSVKKLKE 131 Query: 122 KGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I V +E E +++ + LK A+S D I + S IT ++ Sbjct: 132 NDIEVIVGVEEEKCKKLNESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSKEAR 191 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 HLLR + AI+VG+ T++ D+PELTCR+ +P+RI++D ++ L SK+IK Sbjct: 192 IDGHLLRNKLSAIMVGVNTIIKDNPELTCRIE--NGRNPIRIVVDSTLRIPLSSKVIKNY 249 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 +I T+ D + +N+N+I DLK+L+ L + S+L+EGG Sbjct: 250 DGLTIIATTKYADKLKKEKLVGRNVNVIEIIDKNKKVDLKELMRYLGTLKIDSILIEGGG 309 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + S + +VD + Y + ++G S + K V+ D+ E + Sbjct: 310 TLNFSALEENIVDKVRFYIAPKILGGETSKSSIGGQGFSKLSDAVKLK----DLTYEKLS 365 Query: 357 KNLCLQE 363 + + ++ Sbjct: 366 EEIVIEG 372 >gi|111657939|ref|ZP_01408648.1| hypothetical protein SpneT_02000888 [Streptococcus pneumoniae TIGR4] Length = 360 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 183/363 (50%), Gaps = 13/363 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ E GA Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + + Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ + ++ +K A+S D I S IT ++ VH LR Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHH 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA I T Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++D ++ I+ + DL L+ L + SL++EGG+ + S + Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLC 360 ++VD + +Y + V G P+ + +R G+D +E C Sbjct: 299 QIVDELKIYIAPKVFGGS-AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPC 357 Query: 361 LQE 363 QE Sbjct: 358 SQE 360 >gi|320120555|gb|EFE28957.2| riboflavin biosynthesis protein RibD [Filifactor alocis ATCC 35896] Length = 364 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 175/359 (48%), Gaps = 11/359 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 F +M A+ ++ G S NP V +IVKD I+IG G G HAE +AL+ Sbjct: 3 FHETYMKTAIELAKKGEGYVSPNPLVGAVIVKDDIIIGSGYHTKYGGLHAEREALKNCRT 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +GA+ YVTLEPCSHYG+ PPCA IIE GI V + DP+ V+G+G+Q L I Sbjct: 63 SPKGASMYVTLEPCSHYGKQPPCALAIIESGIDTVYIGSSDPNPEVNGKGIQVLRDANIK 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +++ E + R ++TLK A++ D I S ITG ++ QVH Sbjct: 123 VVTGLLKEECDSLNTFFFHYIATNRPYVTLKFAMTIDGKIASHSGKSQWITGESARAQVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + AI+VG+GTV D+P L CR SP+RII D + ++SKI++T+ P Sbjct: 183 RDRKRYQAIMVGVGTVFQDNPVLNCRTKE-NPVSPIRIICDTKLRTPMNSKIVQTSKEIP 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + T D + +I+ + DL L+ L G+ SL VEGG + Sbjct: 242 TYLATCCTDKSKHSPYEMYGCSILVTKQQNGHIDLNDLMQQLGKIGIDSLFVEGGGTLNW 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP-LEEGYLEKN----FMCVRRDYFGSDVCLEY 354 S + LV+ I Y V+G + L G+ N F F D+ LEY Sbjct: 302 SLLQENLVNHIQCYIGNKVLGGQSAKTAILGTGFDTPNDSPAFKLSNIMCFDEDILLEY 360 >gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis SK2] gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis SK2] Length = 377 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 192/378 (50%), Gaps = 24/378 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D ++M+ AL+ +R + T NP V C++V+DG V+G G A G PHAE AL Sbjct: 1 MSFSAADHQYMARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGATAYVTLEPCSH GR+ PCA +I+ G+ RVV ++DP+ V+G+GLQ L+ Sbjct: 61 AQAGERARGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLA 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + +++R +R +I +KIA S D MA S ITG + Sbjct: 121 DAGIATAVGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------------EHSPMRIILDP 226 + V LRA+S A++ G+GTVLAD P T R + P+R+ILD Sbjct: 181 REDVQRLRARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDR 240 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTIL 282 + D ++ + L ++V P A ++ DL++LL L Sbjct: 241 TLRTPPDVPVV--SALGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIEL 298 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNF 338 R +LVE GA +A +F+ L D I++Y + ++G P L + Sbjct: 299 NRRECNEVLVECGATLAGAFVREGLFDEILVYMAPTLLGSSARPLLGLPQLASMSEKVAL 358 Query: 339 MCVRRDYFGSDVCLEYIG 356 G D+ L + Sbjct: 359 KWQDVRQVGDDLRLTLVS 376 >gi|24374975|ref|NP_719018.1| riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1] gi|24349701|gb|AAN56462.1|AE015783_5 riboflavin biosynthesis protein RibD [Shewanella oneidensis MR-1] Length = 381 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 22/374 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IV D ++G G G PHAEV AL Sbjct: 1 MNWSVLDNQMMSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIQVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 + V LR +S A++ GI TVLADDP L R + L Q P+R++LD + Sbjct: 181 RRDVQRLRLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRAR 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 + + + + A+ +P+++V+ + ++ + + L LL+ L + Sbjct: 241 MPITAALF--AIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLG-K 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +L+E GA +A +FI S L D ++LY++ ++G G Y V Sbjct: 298 SCNQVLIEAGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLV 357 Query: 342 RRDYFGSDVCLEYI 355 G+D Sbjct: 358 DERKVGADTRFTLR 371 >gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202] gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202] gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Edwardsiella tarda FL6-60] Length = 373 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 180/371 (48%), Gaps = 18/371 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV AL Sbjct: 3 MSAAHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVHAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Sbjct: 63 RMAGELARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + +M +E + +L R ++ LK+ S D MA S IT + Sbjct: 123 QAGISVRHGVMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RAQS AIL TVLADDP LT R L E P+R+I+D H Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWASLDEATQRLYPQEHLRQPLRVIVDSHN 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ ++I ++ + D + + + + DL L+ L + Sbjct: 243 RVTPQHRLITQPGE--TLLARVDPDTQAWPSSVSQLAVPRHGEGLDLVLLMMQLGKMQLN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 S+ VE G +A + + + LVD +I+Y + ++G+ L+ Sbjct: 301 SVWVEAGPRLAGALLQAGLVDELIVYLAPTLLGDAARGLCHLPGLDRLGDAPALTFSDVT 360 Query: 345 YFGSDVCLEYI 355 G+D+ L Sbjct: 361 RVGNDLRLTLR 371 >gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Citrobacter koseri ATCC BAA-895] gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895] Length = 367 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AG+ Sbjct: 2 LDEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI+LD +++ + Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ DD + + + DL L+ +L + + S+ VE Sbjct: 242 HRIVQQPGD--TWFARTQDDSRIWPETVRSLRVPEHNGHLDLVVLMMLLGKQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + +VD +I+Y + ++G + LE+ +F + G D Sbjct: 300 AGPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLSEAPHFKFNEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL I Sbjct: 360 VCLHLIP 366 >gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 369 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 121/366 (33%), Positives = 187/366 (51%), Gaps = 19/366 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D ++MS AL +R T+ NP V ++VK G+V+G G G PHAEV AL Sbjct: 2 FSQDDYQWMSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYALHA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ +V GRGL+ LS+ Sbjct: 62 AGDNARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI D ++ SE + + R +T+K+ S D MA S IT ++ Sbjct: 122 GIKTDFGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V LRA+ DA+L TVLAD+ LT R + L P+R+I+D +L Sbjct: 182 DVQRLRARHDAVLSSAETVLADNASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + D ++++ PV++ ++ + ++ DL L +L + V S+ Sbjct: 242 TPDLPLLQSE--GPVLLARHKASGEWPAWVQQLEVPLLD-GKLDLVSLFMLLAKQNVNSV 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYF 346 LVE G + + ++ LVD ++LY++ ++G+ G G + Sbjct: 299 LVEAGPRLCGALLDKGLVDDLVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLNIKDVRMV 358 Query: 347 GSDVCL 352 G D+ + Sbjct: 359 GPDIRI 364 >gi|319405760|emb|CBI79383.1| Riboflavin biosynthesis protein ribD [Bartonella sp. AR 15-3] Length = 374 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 154/374 (41%), Positives = 224/374 (59%), Gaps = 12/374 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + H+GLT NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MNKVAQDKRFMAAAIRLAERHIGLTGENPSVGALIVQNKETGSSIVGYGVTALRGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V+AL AG A GATAYVTLEPCSHYG++ PC +I GI RVV+ + DPD RV G G+ Sbjct: 61 VKALLMAGPLAYGATAYVTLEPCSHYGKTSPCVNALINAGITRVVIALSDPDQRVYGCGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI + + ++ E L AYL + +R +TLK+A+S DN IG G SV I+ Sbjct: 121 TLLRAAGIEVTEGVLAEEAFETLSAYLCVKKLQRCEVTLKMAISADNGIGKKGKSSVGIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS+ Q H+LRAQ++ I+VGIGT+LADDP+L CRL GL SP+R+ILD ++ LD+K Sbjct: 181 GEISRAQTHILRAQNNVIMVGIGTILADDPQLDCRLPGLGMRSPIRVILDKDLRIPLDAK 240 Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +++TA P ++ +A + ++I D + +L +L R + S Sbjct: 241 VVQTAANIPTWVICGTVLSKKRKKIALEQYGVSICSVDTNNNVISPFTILQLLYQRKINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+++ VD +I + + I++G+ I +P + YL + F + G+D Sbjct: 301 VLLEGGAKTGEIFLDAGCVDCLICFYAPIILGKDRIKAPHFQSYLSE-FNEIEMRMLGND 359 Query: 350 VCLEYIGKNLCLQE 363 ++ K LC +E Sbjct: 360 RLCKWRRKILCSRE 373 >gi|229191491|ref|ZP_04318474.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876] gi|228591971|gb|EEK49807.1| Riboflavin biosynthesis protein [Bacillus cereus ATCC 10876] Length = 350 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 121/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+R+ILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGEKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + D+ IGK+ Sbjct: 300 KIIGGRLAPSFVEGNGITKMKDAIEFK----DISFTQIGKD 336 >gi|254975336|ref|ZP_05271808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-66c26] gi|255092726|ref|ZP_05322204.1| riboflavin biosynthesis protein [Clostridium difficile CIP 107932] gi|255314465|ref|ZP_05356048.1| riboflavin biosynthesis protein [Clostridium difficile QCD-76w55] gi|255517142|ref|ZP_05384818.1| riboflavin biosynthesis protein [Clostridium difficile QCD-97b34] gi|255650247|ref|ZP_05397149.1| riboflavin biosynthesis protein [Clostridium difficile QCD-37x79] gi|260683365|ref|YP_003214650.1| riboflavin biosynthesis protein [Clostridium difficile CD196] gi|260686960|ref|YP_003218093.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Clostridium difficile R20291] gi|306520226|ref|ZP_07406573.1| riboflavin biosynthesis protein [Clostridium difficile QCD-32g58] gi|260209528|emb|CBA63111.1| riboflavin biosynthesis protein [Clostridium difficile CD196] gi|260212976|emb|CBE04276.1| riboflavin biosynthesis protein [Clostridium difficile R20291] Length = 367 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 178/363 (49%), Gaps = 11/363 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ Sbjct: 1 MNQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAI 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L Sbjct: 61 NSAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 I + ++E E + A+ KR +K AVS D I S I+ S Sbjct: 121 DNNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K Sbjct: 181 RYLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 + I+ T + + ++ N+ I + DL+ ++ L + S+LVEGG Sbjct: 241 -KTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDV 350 A + S ++LVD + L+ S +IG P+ + + D+ Sbjct: 300 ATLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDGDI 359 Query: 351 CLE 353 +E Sbjct: 360 LIE 362 >gi|309389474|gb|ADO77354.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halanaerobium praevalens DSM 2228] Length = 379 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 201/376 (53%), Gaps = 20/376 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D ++M AL+ + VG TS NP V +IVK+G +IG G G HAEV AL + Sbjct: 4 FSISDQKYMDRALKLAALAVGKTSPNPLVGAVIVKNGEIIGEGYHQKYGAQHAEVNALAK 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A GA +V LEPCSH+G++PPC Q II G++RVVV + DP+ +V+GRG++ L + Sbjct: 64 AGFKAEGAELFVNLEPCSHFGKTPPCTQAIIASGLKRVVVALVDPNPQVAGRGIKQLRKA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ ++ K +L + + LK A + D I + S IT ++ Sbjct: 124 GIKVEIGLLAAKAKKLNEIFLKYITSELPFVYLKKAQTLDGYIATSSSDSKWITNEQARK 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 + H LR + DAILVGIGT+LADDP LT RL + P+RIILDP ++ +D++II+ Sbjct: 184 EGHKLRQKVDAILVGIGTILADDPALTTRLEKTETKDPLRIILDPLLEIPIDAQIIEQKS 243 Query: 242 LAPVIIVTENDDPVLA---------LAFRKKNINIIYC-----DCRDLKKLLTILVGRGV 287 A +I+T + P +K + II + DLKK+L L + + Sbjct: 244 EAETLIITATEFPPAQAVAKFKKKEKILKKGGVQIISFAVDANNYFDLKKILKYLHQQKI 303 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEG----YLEKNFMCVR 342 S+LVEGGA ++HSF+ +L+D + + + G G S G N + Sbjct: 304 ASILVEGGAKLSHSFLAQKLIDKFYYFIAPKIYGGNDGCASFSGSGPKLMADTVNLEIIE 363 Query: 343 RDYFGSDVCLEYIGKN 358 + ++ L + KN Sbjct: 364 QRNLADNILLIAVSKN 379 >gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus somnus 129PT] gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus somnus 129PT] Length = 376 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 21/371 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D FM AL ++ + T+ NP+V C++VK+G ++GRG G PHAEV AL Sbjct: 4 TFSAQDEYFMQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG+ A+GATAYVTLEPCSH+GR+PPCAQ +IE GIR V+V + DP+ +V+G+GL L Sbjct: 64 DAGDRAKGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQA 123 Query: 122 KGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + E +LTR ++ + LK+A+S D MA S I+G ++ Sbjct: 124 AGIESAVGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RA+ AIL TVLADDP L R P+RIILD Sbjct: 184 QDVQQERAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHL 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVT 288 ++ K+ + +PV +V + + + A + I + + L+ LL L R + Sbjct: 244 VTPRHKLFQ--CQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSYLENLLIELAKRQIN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRR 343 SL +E G +A +FI LV+ +I+Y + ++G +P L+ + + Sbjct: 302 SLWLEAGETLAGAFIEENLVNELIIYMAPKLLGNEARGFCHLPH-LKRLADAPKWQLLSL 360 Query: 344 DYFGSDVCLEY 354 G D+ L Y Sbjct: 361 AQIGEDIKLNY 371 >gi|168181552|ref|ZP_02616216.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf] gi|237796324|ref|YP_002863876.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4 str. 657] gi|182674971|gb|EDT86932.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Bf] gi|229264059|gb|ACQ55092.1| riboflavin biosynthesis protein RibD [Clostridium botulinum Ba4 str. 657] Length = 365 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 121/358 (33%), Positives = 191/358 (53%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M L+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+ Sbjct: 6 FYMEKTLKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA++I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAEYIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++++V +R Sbjct: 126 EIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARHKVQQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGI TV+ DDP LT R+ G SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIDTVIKDDPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETLSKRAIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 T +P A ++ + L KL+ L GV S+L+EGG+ + Sbjct: 244 ATTKKHKNPSKKNALENLGAKVLEFEENQEGKVPLNKLMEYLGTEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD I+ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKIMCFIAPKIMGGQDSKTMIGGTGIESLKDIFNLQNLKFEKIGQDILIE 361 >gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dechloromonas aromatica RCB] gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dechloromonas aromatica RCB] Length = 367 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 186/361 (51%), Gaps = 13/361 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL Sbjct: 1 MSFSAVDHGMMARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE A+G TAYVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ VSG+GL L Sbjct: 61 RSAGERAKGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLR 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + +++R R + LK+A S D + S ITG + Sbjct: 121 AAGIETASGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ AIL GIGTV DDP+L+ R + P+R+++D + ++++I++ Sbjct: 181 RRDGHAWRARACAILTGIGTVRDDDPQLSVR-DVATTRQPLRVVVDSKLETPVNARILQG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295 PV+I ++ + R +++ DL LL L RG+ + E G Sbjct: 240 G---PVLIAGAVENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 + S + LVD ++LY + +IG L ++ G+D+ Sbjct: 297 FKLNGSLLREGLVDELLLYLAPCLIGHQASGLFNLPELTTLDGKQRLQIRDLRQVGADIR 356 Query: 352 L 352 + Sbjct: 357 V 357 >gi|221632527|ref|YP_002521748.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM 5159] gi|221155601|gb|ACM04728.1| riboflavin biosynthesis protein RibD [Thermomicrobium roseum DSM 5159] Length = 382 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 134/369 (36%), Positives = 189/369 (51%), Gaps = 16/369 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ +R G + NP+V +IV++G V+G G T G PHAE+ AL Sbjct: 2 MQELDTDRYWMQRAIALARRAQGRVAPNPAVGAVIVREGEVVGEGCTQPPGGPHAEIVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + AGE ARGAT YVTLEPC+HYGR+PPC + I++ GIRRVV + DP V+GRG L Sbjct: 62 QRAGERARGATLYVTLEPCAHYGRTPPCVEAIVQAGIRRVVAAILDPFPAVAGRGFTLLR 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q G+ + + YL R E +TLK A++ D I S ITG + Sbjct: 122 QAGVDVTVGIEAEAAAEVNAGYLKRLRESLPEVTLKYAMTLDGHIATRTGHSKWITGQEA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDS 234 + H LR Q DAILVG+ TVL DDPELT RL HSP+R+++D + + Sbjct: 182 RRYAHQLRDQHDAILVGVETVLTDDPELTTRLDPRDAGDGGPHSPLRVVIDTRARTPPSA 241 Query: 235 KIIKTALLAPV-IIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTS 289 +++ + L A +I TE P A K + + C DL L +L RG+ Sbjct: 242 RLLDSRLPARTLVITTEAAPPERVAALWKAGAELAFVPLRCGHVDLAAALRVLAERGINR 301 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRD 344 +LVEGG V S L D+++ + + +++G P PL + + VR Sbjct: 302 VLVEGGGRVLGSLFEQGLADAVVAFIAPVLVGGTAAPVPLAGEGVARMEDAPRLTGVRVR 361 Query: 345 YFGSDVCLE 353 G D+ +E Sbjct: 362 QVGDDLVIE 370 >gi|197283994|ref|YP_002149866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis HI4320] gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis HI4320] Length = 385 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 172/364 (47%), Gaps = 16/364 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AG Sbjct: 16 ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI Sbjct: 76 ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + + R +I LK+A S D +A S IT S+ V Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RAQ+ AIL TVLADDP + R L + P+RII D +++ Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTP 255 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 D KI + A + + DL L+ L R + S+ V Sbjct: 256 DYKITQLAGECLLARTHSQQEAWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSVWV 315 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348 E GA A + + LVD +I+Y + ++G SPL F G Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQIGP 375 Query: 349 DVCL 352 D+ + Sbjct: 376 DIRV 379 >gi|28210395|ref|NP_781339.1| riboflavin biosynthesis protein [Clostridium tetani E88] gi|28202832|gb|AAO35276.1| riboflavin biosynthesis protein [Clostridium tetani E88] Length = 380 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 183/361 (50%), Gaps = 11/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M A+ + G + NP V +IVKDG +IG G G HAE++A + Sbjct: 18 MMNLDEIYMKRAIELAHLGEGYVNPNPLVGAVIVKDGRIIGEGYHKKFGEAHAEIEAFKS 77 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E+ +G T YV LEPCSHYG++PPC II+ GI++V++ + DP+ V+GRGL+ L + Sbjct: 78 CKEDPKGGTLYVNLEPCSHYGKTPPCVDVIIKKGIKKVIIGMKDPNPLVAGRGLEILKKA 137 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + +E E + ++ K+ LK A + D I + S ITG S+ Sbjct: 138 NIEVRVGTLEDECRNLNEIFIKYITYKKPFCILKWASTLDGKICSSIGDSRWITGEDSRE 197 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VHL+R + +I+VG+ T+L D+P LT RL + +P RII+D + LD++I K Sbjct: 198 YVHLIRNKVSSIMVGVNTILRDNPSLTTRLKDRKGVNPTRIIVDSKGRTPLDARIFKEEG 257 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 I T + F K II + DL+ L+ L + S+L+EGG Sbjct: 258 D-TFIATTSQIEDKKIKEFEKVGAKIIIIPEKGRKVDLQYLVNYLTKLNIDSILLEGGGT 316 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + +S + +VD ++++ + ++G +P+E ++ + F D+ + Sbjct: 317 LNYSALKEGIVDKVLMFLAPKILGGENSKTPIEGEGIKYIKDCIELKDLSIKNFKEDILI 376 Query: 353 E 353 E Sbjct: 377 E 377 >gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei ATCC 43380] gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei ATCC 43380] Length = 369 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATA+VTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 64 AQGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 NHGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+S AIL TVLADDP LT R L P+RIILD H +++ + Sbjct: 184 FRAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+ T P + D A ++ + + + DL L+ L R + S+ VE Sbjct: 244 KV--TQQDGPCWLARVEADTQPWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L F+ G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGTDARGLCQLAGLTHLLQAPEFVFSEVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|291533443|emb|CBL06556.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Megamonas hypermegale ART12/1] Length = 360 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 187/353 (52%), Gaps = 13/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + +G TS NP V +IVKD V+G G G PHAEV AL +AGE A+GA Sbjct: 1 MRLAMQLAGNAIGRTSPNPLVGAVIVKDNRVVGCGWHREAGTPHAEVHALNQAGELAQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC+HYG++PPC++ ++E ++ V + D + +V+G+G + L GI + Sbjct: 61 DVYVTLEPCAHYGKTPPCSKALVEAKVKNVYGGLLDVNPKVAGKGFKILEDAGIHVEYGF 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + + K+ I LK A++ D I A S IT S+ + LR Sbjct: 121 LQDELRKQNEVFFKWIEHKKPFIVLKAAMTLDGKIATATGQSKWITNETSRAYGYKLRDI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 D I+VGI TV+ D+P LT R++G +P+RI++D K+ +++ + + ++ T Sbjct: 181 YDGIMVGINTVIEDNPMLTARVDG--GKNPIRIVVDSSLKIDINANVAQDKSAKTIVATT 238 Query: 250 ENDDPVLALAFRKK-----NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + D L + + ++ D D++KLL IL + + S+LVEGGA ++ SF+ Sbjct: 239 DKADKDKILKLQAQDVDVIVVDKDENDKVDIEKLLDILGQQNICSILVEGGATLSGSFVA 298 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 +LVD + + + ++G +P+ + + ++ + D+ + Sbjct: 299 KKLVDKVYFFIAPKIVGGKEAKTPVAGTGILNLQEALSLKDIQIEKLEEDILI 351 >gi|163783070|ref|ZP_02178065.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159881750|gb|EDP75259.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 362 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 122/353 (34%), Positives = 197/353 (55%), Gaps = 5/353 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +MS AL ++ GLT NP+V C++V +G ++G G G PHAEV ALE+AGE+ Sbjct: 3 DVGYMSLALSLAKRRKGLTHPNPTVGCVVVNEGEIVGLGYHEGAGHPHAEVVALEQAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G+T YVTLEPC+H+GR+PPC +I GIR+ VV V DP+ V G+G++ L + G+ + Sbjct: 63 AKGSTLYVTLEPCTHFGRTPPCTDALIRAGIRKAVVAVKDPNPVVGGKGIERLREAGLDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + T KR ++TLK+A + D + S I+ S+ H Sbjct: 123 EVGVLEEEARELNEDFFTFITMKRPYVTLKLAQTLDGKVATPSGDSKWISSPESRRFAHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+++ A+LVG+ T L D+P LT R P+RI++DP ++ +DS ++ + + Sbjct: 183 LRSEATAVLVGLNTFLRDNPSLTIRHIPF-GRQPLRIVIDPELEIPMDSNLVSDGMAQTL 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ + D P + ++Y + +L +LL L R V LLVEGGA F+ Sbjct: 242 VVFSRRD-PAKESELLGAGVQLLYMEKIELGELLKELASRDVLHLLVEGGAYTVSQFLKE 300 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC-VRRDY-FGSDVCLEYIG 356 L D ++++++ V+G+G S L + +RR++ G D EY+ Sbjct: 301 GLWDRLVVFQAPRVMGDGISLSGLGVDRVNDCLKLKIRREHALGEDRVFEYVP 353 >gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91] gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Nitrosomonas eutropha C91] Length = 367 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 12/359 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D MS AL+ + + TS NP V C+IV DG V+G G G HAE+ AL E Sbjct: 6 FTASDYMHMSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALRE 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YVTLEPCSH+GR+PPC + +I + RV++ +DDP+ V+G+G + L + Sbjct: 66 AGDLARGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E E + ++TR R I KIA S D I + S ITG ++ Sbjct: 126 GVEVQTGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQ 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S AIL G+ +V DDP LT R P+RI+LD + ++ L +K+++ A Sbjct: 186 DGHRWRARSCAILTGVNSVKVDDPLLTVRYIE-TSRQPIRIVLDSNLEIPLQAKLLENAD 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297 I T D +++ DLK ++T L G+ LLVE G Sbjct: 245 --TTWIFTVQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPV 302 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCL 352 + + + + L+D II Y + ++G + + + N G D+ L Sbjct: 303 LNGALVAAELIDEIIFYFAPNLLGNSAQAMLVLPEITDLSEKYNLQITDIRKIGIDIRL 361 >gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D11S-1] Length = 374 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 132/373 (35%), Positives = 192/373 (51%), Gaps = 21/373 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL E Sbjct: 5 FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA+ ++E G+ +V+ + DP+ +V+G+GLQ L+ Sbjct: 65 AGENARGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADA 124 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + E +L R + + LK+A+S D MA S ITG ++ Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ A+L TVLADDP L R L P+R+ILD K+ Sbjct: 185 DVQQYRAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKV 244 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289 D K+ T APV + E+D + + + + L+ L+T L R + + Sbjct: 245 RSDFKVFLTD--APVWLAGEDDFQLTGFPTSTEYLKLDRSHGESRLQALMTELGKRQINT 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 L VE GA +A + I LVD +I+Y + ++G+ +P L + + Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPH-LTRLADAPLWQLQSCE 361 Query: 345 YFGSDVCLEYIGK 357 G D+ L YI K Sbjct: 362 PTGDDLKLIYIRK 374 >gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996] gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996] Length = 365 Score = 355 bits (911), Expect = 6e-96, Method: Composition-based stats. Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 13/363 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL +R TS NP V C+I G ++G+G G PHAEV AL +AGE Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L+R R + +K A S D +A S ITG ++ V Sbjct: 125 TESGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA+S A+L GIGTVLAD+P L R P RI+LD + L S ++ L+P Sbjct: 185 TLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSKLQTPLGSHMVSDD-LSP 242 Query: 245 VIIVTENDDPVLALAFRK-KNINIIY-----CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +IVT DD +R +I I+ DL LL L G ++VE GA + Sbjct: 243 TVIVTAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGATL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +FI + L D I+LY++ ++GEG +P+ E + + G DV Sbjct: 303 TSAFIEAGLADEIVLYQAPKILGEGRSLLTLPANPAVLTSEGEWESRSVELIGQDVKWVL 362 Query: 355 IGK 357 K Sbjct: 363 RKK 365 >gi|307825581|ref|ZP_07655799.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum SV96] gi|307733467|gb|EFO04326.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum SV96] Length = 361 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 193/362 (53%), Gaps = 13/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S DA +M+ A+ ++ T NP V C++V+DG VIG+G G HAEV+AL+ Sbjct: 3 SVRDAFYMAQAISLAKKGRYTTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEALKNV 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 +A+GATAYVTLEPCSH GR+PPC +I+ G+ RVV + DP+ +VSG GL+ L G Sbjct: 63 -PDAKGATAYVTLEPCSHQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLKVAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +++ + ++ R + R + K+A+S D MA S IT ++ Sbjct: 122 IEVICGVLQEDALALNRGFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEARAD 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA+S AIL GI TVLADDP L R++G P+R++LD H + + +++ K Sbjct: 182 VHRLRAESSAILTGINTVLADDPALNARVDG-DVLQPVRVVLDTHLNMPVTAQMAKLPGR 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 + +I+T D A ++ + C+ DL+ ++ L + + LLVE G+ + Sbjct: 241 S--LILTCAQDEQKQGALQQVGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSVL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354 + ++ VD ++Y + ++G+ G L++ +K G D+ L Y Sbjct: 299 NGALLDEDWVDEYVIYMAPCILGDQGRGLFNLPGLQQMADKKQLKLRDVRQVGQDLKLTY 358 Query: 355 IG 356 Sbjct: 359 TP 360 >gi|228953669|ref|ZP_04115709.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|229070840|ref|ZP_04204068.1| Riboflavin biosynthesis protein [Bacillus cereus F65185] gi|229179672|ref|ZP_04307022.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W] gi|228603778|gb|EEK61249.1| Riboflavin biosynthesis protein [Bacillus cereus 172560W] gi|228712230|gb|EEL64177.1| Riboflavin biosynthesis protein [Bacillus cereus F65185] gi|228805903|gb|EEM52482.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 350 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 121/341 (35%), Positives = 184/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+R+ILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDREAPTWIFTTSNHAEEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D IILY + Sbjct: 240 ENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLIEGGGEVNASFIENKLMDKIILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + D+ IGK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMKDAIEFK----DISFTQIGKD 336 >gi|239627638|ref|ZP_04670669.1| riboflavin synthase subunit alpha [Clostridiales bacterium 1_7_47_FAA] gi|239517784|gb|EEQ57650.1| riboflavin synthase subunit alpha [Clostridiales bacterium 1_7_47FAA] Length = 370 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 190/373 (50%), Gaps = 14/373 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M +S D +M AL + G + NP V +IV+DG VIG+G + G PHAE AL Sbjct: 1 MSETS-DNIYMGRALALAAKGEGRVNPNPLVGAVIVRDGAVIGQGYHGFYGGPHAERAAL 59 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + A+GA YVTLEPC HYG++PPC II+ GIRRVV+ DP+ V+G+G+ L Sbjct: 60 DSLTAPAKGAVLYVTLEPCCHYGKTPPCTDAIIKSGIRRVVIGAMDPNPLVAGKGIAALK 119 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ ++E E + ++ ++ +K A++ D +G S ITG + Sbjct: 120 SHGIEVIQGVLEEECIRQNEVFFHFIRTRQPYVVMKYAMTMDGRTATSGRLSRWITGEQA 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH R + A++ G+GT+LADDP+LTCR+ G +P+RII D L S +++T Sbjct: 180 REHVHKTRNRLSAVMTGLGTILADDPQLTCRIPG--GRNPVRIICDTRLMTPLTSNVVRT 237 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 A I+ T DP F+ I+ R DL+ L+ L G + S+L+EGG Sbjct: 238 APHVRTILATCCQDPAAMAPFKDAGCEILILPERDGHTDLRFLMERLGGMDIDSVLLEGG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 +A+ S ++ +V + Y + + G P+ +E + + G D+ Sbjct: 298 SALNWSALDQGIVHKLQAYIAPKIFGGEKGLCPVGGKGVELPGMAFSLEPPKITVLGRDI 357 Query: 351 CLEYIGKNLCLQE 363 LE G C Q Sbjct: 358 LLES-GVVPCSQA 369 >gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis ATCC 29906] gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Proteus mirabilis ATCC 29906] Length = 385 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 173/364 (47%), Gaps = 16/364 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M A+ + TS NP+V C+IVK+G +IG G + G PHAEV AL AG Sbjct: 16 ANDETYMRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMAG 75 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+GAT YVTLEPCSH+G++PPCA +I G++RVV + DP+ +V+GRGL L GI Sbjct: 76 ENAKGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGI 135 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + + R +I LK+A S D +A S IT S+ V Sbjct: 136 DVSHGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDV 195 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RAQ+ AIL TVLADDP + R L + P+RII D +++ Sbjct: 196 QNFRAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTP 255 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 D KI + A + + DL L+ L R + S+ V Sbjct: 256 DYKITQLAGECLLARTHSQQEDWQGDVSEILLPTNGKNSSVDLVLLMMQLGKRNINSIWV 315 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348 E GA A + + LVD +I+Y + ++G+ SPL F G Sbjct: 316 ESGAHFAGALLELGLVDELIIYIAPKILGDDARGLLSISPLSSLSESPEFTIDSLQQIGP 375 Query: 349 DVCL 352 D+ + Sbjct: 376 DIRV 379 >gi|163868466|ref|YP_001609675.1| riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP 105476] gi|161018122|emb|CAK01680.1| Riboflavin biosynthesis protein ribD [Bartonella tribocorum CIP 105476] Length = 375 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 155/376 (41%), Positives = 224/376 (59%), Gaps = 13/376 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHA 55 M D RFM+AA+R + HVGLT NPSV LIV++ ++G GVTA+ G PHA Sbjct: 1 MNKKVQDERFMAAAIRLAERHVGLTGENPSVGALIVQNDDCAGPFIVGYGVTAFHGRPHA 60 Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 EVQAL AG A+GATAYVTLEPC+HYG++ PC +I+ GI R+VV + D D RV GRG Sbjct: 61 EVQALRMAGPLAQGATAYVTLEPCAHYGKTSPCVNALIDSGISRIVVALTDCDKRVDGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 L L + GI +V+ ++ E L + + +R +T K+AVS DN +G G + I Sbjct: 121 LALLREAGIKVVEGILAEEAFESLWTHWCIKKMQRCAVTFKMAVSADNSVGKRDEGEIRI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 +G +S H+LRAQ++AILVGIGT+LADDP+L CRL G++ SP+RIILD + L++ Sbjct: 181 SGALSHTHTHILRAQNNAILVGIGTILADDPQLNCRLPGMEMRSPIRIILDADLSIPLEA 240 Query: 235 KIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVT 288 K+++TA+ P ++ + D + +++ + + LL IL G+ Sbjct: 241 KVVQTAIKIPTWVICDVDLSKKSKKNTLEQYGVSVYSVEMNNGYVEPFALLQILYKHGIN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGS 348 S+L+EGG F+N+ VD +I + S +V+G+ I +P YL + F V FG+ Sbjct: 301 SVLLEGGVKTGEKFLNAGCVDHLICFYSPVVLGKKRIEAPHFGNYLSQ-FHEVETKMFGN 359 Query: 349 DVCLEYIGKNLCLQEL 364 D ++ K LC QEL Sbjct: 360 DRFYKWRRKTLCSQEL 375 >gi|83754218|pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754219|pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754220|pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754221|pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754933|pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754934|pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754935|pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|83754936|pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis gi|211939446|pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939447|pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939448|pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis gi|211939449|pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction Mechanism In Riboflavin Biosynthesis Length = 373 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 175/356 (49%), Gaps = 9/356 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 72 AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ + + +L ++TLK A S D I + S IT ++ Sbjct: 132 EVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDA 191 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R +ILVG+GTV AD+P LTCRL + P+R+ILD + D+K+I + Sbjct: 192 QQYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAP 250 Query: 244 PVIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T D +NI + + + +L IL G+ S+ VEGG+AV S Sbjct: 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 F+ II Y + +IG PS + + G D+ L Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 366 >gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [marine bacterium HP15] Length = 371 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 17/371 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D M+ A++ + T NP V C+I + +V+G G G HAE +AL + Sbjct: 2 IENRDRAMMARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ V DP+ VSGRGL L + Sbjct: 62 AGPDARGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ E ++ R R + LK+A S D MA S ITG ++ Sbjct: 122 GIRVTEGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V LRA SDAIL G+GTVLADDP LT R L + P+R+I D + Sbjct: 182 DVQRLRAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSS 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTS 289 +KI++ + V + A I++ + DL +LL L G+ Sbjct: 242 AKILQGGNVQ-VFCASSTLATAPAQDLAALGISLTGVAWKDNGIDLAELLDSLGELGINE 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346 LLVE G +A +FIN LVD + LY++ + +G G P+ PLE + + + R Sbjct: 301 LLVEAGPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQV 360 Query: 347 GSDVCLEYIGK 357 G D L + Sbjct: 361 GEDQRLILTRR 371 >gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 369 Score = 354 bits (910), Expect = 8e-96, Method: Composition-based stats. Identities = 134/366 (36%), Positives = 191/366 (52%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL +L+ +L G G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 A + +F+ L D I+LYRS ++G G +P + V + G DV Sbjct: 300 AKLTSAFLAEDLADEIVLYRSPKILGSGKDLFALPENRAALSAPPLWTPVSTEILGHDVK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1] gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1] Length = 384 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 16/368 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ A++ ++ T NP V C++VKD +IG+G G HAEV AL +A +A Sbjct: 7 EYWMAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAKHDA 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GATAYVTLEPCSH G++PPCA +I+ G+ RVV + DP+ VSG GL + + GI + Sbjct: 67 VGATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEII 126 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ES+ + ++ R E ++ +K+A+S D M S IT ++ V L Sbjct: 127 GPILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQRL 186 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKT 239 RAQSDAI+ GIG+VLAD+P +T R++ + P+R+++D + ++KI+ Sbjct: 187 RAQSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILYP 246 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEG 294 A A V V E + KK + + + DL + L G+ +L+E Sbjct: 247 ANQAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLEA 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA +A F+ + L+D II+Y + ++G P PL+ + G DV Sbjct: 307 GAELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDVMDEAVDLTLKSVRQVGQDVR 366 Query: 352 LEYIGKNL 359 L YI K L Sbjct: 367 LVYIPKYL 374 >gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp. 638] gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp. 638] Length = 367 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 187/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG+++G G G PHAEV AL AGE Sbjct: 2 QDEIYMARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC + +I+ G+ RVV + DP+ +V+GRGL L Q+GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M ++ + +L R +I LK+ S D MA S +T S+ V Sbjct: 122 VSHGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP +T R + L + P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNQDTQALYPQENLRQPLRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ + + ++I + DL L+ +L + V S+ V Sbjct: 242 HRIVQQPGET---LFARTKEDDRQWPEHVRSIMVPEHKGHLDLVVLMMLLGKQQVNSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ G Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPKLLGHEARGLFALPGLEKLADAPQLKFSDIRPVGP 358 Query: 349 DVCLEYIG 356 DVCL Sbjct: 359 DVCLHLTP 366 >gi|313902290|ref|ZP_07835695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter subterraneus DSM 13965] gi|313467441|gb|EFR62950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter subterraneus DSM 13965] Length = 443 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 136/368 (36%), Positives = 195/368 (52%), Gaps = 15/368 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D FM AL + G T NP V +IV+DG+V+G G G PHAEV+AL A Sbjct: 38 EADRHFMRRALDLAARAGGRTHPNPMVGAVIVRDGVVVGEGYHRRAGEPHAEVEALRSAR 97 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++ARGAT YVTLEPC H+GR+PPC + I+ G+RRVVV + DPD RV+GRGL L+Q G+ Sbjct: 98 DQARGATLYVTLEPCCHHGRTPPCTEAILAAGLRRVVVAMVDPDPRVAGRGLSVLAQAGV 157 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E++ + AY+ +V R +T K A++ D I A S ITG ++ V Sbjct: 158 EVAVGVEADRALRLNEAYVVHRVLGRPMVTAKYAMTLDGRIATARGESRWITGPRARRWV 217 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR + DAILVG+GTVLADDP LT R P+R+ILD H + D+++I+ A + Sbjct: 218 HRLRDRVDAILVGVGTVLADDPSLTVRW-HPGGRDPVRVILDSHARTPPDAQVIRAARHS 276 Query: 244 P---VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGG 295 P + VT V + ++ + LL L RG+ LLVEGG Sbjct: 277 PAPTWVAVTPQAPAVRTARLEAAGVQVLRVPADPHGRVSILHLLRELASRGIVHLLVEGG 336 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDV 350 A+V SF + LVD ++ + + ++G P P+ + ++ G D Sbjct: 337 ASVHGSFFAAGLVDRVVAFIAPKLVGGRAAPGPIGDPGVDALAAAPALHRPTWRRIGEDW 396 Query: 351 CLEYIGKN 358 + ++ Sbjct: 397 MISGYLRD 404 >gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. ANA-3] gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sp. ANA-3] Length = 381 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 191/374 (51%), Gaps = 22/374 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D + MS A++ +R T NPSV C+IVKD ++G G G PHAEV AL Sbjct: 1 MNWSELDNQMMSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA +I G++RVVV V+DP+ +V GRG+Q L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E ++ R +T+K+A S D ++ S ITG + Sbjct: 121 DAGIEVDVGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFK 229 + V LR ++ A++ GI TVLAD P L R L+ Q P+R+ILD + Sbjct: 181 RRDVQRLRLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCR 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 + + + ++ A+ +P+++V+ +A ++ + D L LL+ L + Sbjct: 241 MPITAALL--AIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLG-K 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCV 341 +L+E GA +A +FI L D ++LY++ ++G G Y V Sbjct: 298 SCNQVLIEAGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLV 357 Query: 342 RRDYFGSDVCLEYI 355 G+D+ Sbjct: 358 DERKVGADMRFTLR 371 >gi|262066887|ref|ZP_06026499.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum ATCC 33693] gi|291379396|gb|EFE86914.1| riboflavin biosynthesis protein RibD [Fusobacterium periodonticum ATCC 33693] Length = 369 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 197/365 (53%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 TVDEKFMARAIELAFKGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + GI Sbjct: 64 EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT ++ +V Sbjct: 124 KVDFGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEAAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RLN G+++ +P R+++DP+ + ++SK + Sbjct: 184 QFLRTKFTAIMVGINTVLKDNPSLDSRLNEEKYGIEKRNPFRVVVDPNLESPIESKFLHF 243 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGG 295 IIVT +D+ + +IY + + ++ +L L + S+L+EGG Sbjct: 244 DDK-KAIIVTSSDNRNLEKVKEYENIGTRLIYLEGKVFKMEDILKELGKLNIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + +D+ ++ + +IG+ P G+ + V + + +G + Sbjct: 303 SGLISTAFKENAIDAGEIFIAPKIIGD-NSSIPFISGFNFDSMEDVFKLSNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISIEF 366 >gi|148983580|ref|ZP_01816899.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP3-BS71] gi|147923727|gb|EDK74839.1| riboflavin synthase subunit alpha [Streptococcus pneumoniae SP3-BS71] Length = 360 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 184/363 (50%), Gaps = 13/363 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G + NP V +IVKD +IG+G + G PHAE AL+ + GA Sbjct: 1 MKLAIKLAQKGAGYVNPNPMVGAIIVKDNHIIGQGYHEFFGGPHAERNALKNCRKSPVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H+G++PPC II+ GI RVV+ D + VSG+G++ L + + + + Sbjct: 61 TLYVTLEPCCHFGKTPPCIDAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ + ++ +K A+S D I S IT ++ VH LR Sbjct: 121 LENECLNLIKSFRKYITQHVPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHY 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG+ TV+ DDP LTCRL + +P+RII D H + L SKI+KTA I T Sbjct: 181 VSAIMVGVNTVIQDDPLLTCRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIAT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++D ++ I+ + DL L+ L + SL++EGG+ + S + Sbjct: 239 SSEDKNKMKLYQNHGCEILSIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQ 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLC 360 ++VD + +Y + + G P+ + + +R G+D +E C Sbjct: 299 QIVDELKIYIAPKIFGGS-AKFPVGGEGISLSNDAIRLKPYAFSQIGNDYLIESEVIYPC 357 Query: 361 LQE 363 QE Sbjct: 358 SQE 360 >gi|253699856|ref|YP_003021045.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21] gi|251774706|gb|ACT17287.1| riboflavin biosynthesis protein RibD [Geobacter sp. M21] Length = 369 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 11/369 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S + M AL +R VG T+ NP+V C+IV+DG V+G G G PHAEV AL+ Sbjct: 1 MSDLHLKMMRLALCEARKGVGKTAPNPAVGCVIVRDGEVVGTGWHKKAGTPHAEVHALKA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSG+G+Q L Sbjct: 61 AGEKAAGADAYVTLEPCSHFGKTPPCAKALIEAKVARVFVAMVDPNPLVSGKGIQMLKDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + ++ + + LK A++ D A S +T ++ Sbjct: 121 GIAVEVGLLEEESRELNLPFIKWIQTRLPFVVLKSALTLDGKSATASGDSKWVTSDRARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR + DAI+VG+GTV DDP LTCR+ G P+R+I+D ++ L + ++ Sbjct: 181 EVHRLRGRLDAIMVGVGTVAKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAVLGVPS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 A II T + D A + + I+ C DL L L RGV S+L+EGG+ Sbjct: 239 KAQTIIATCSGDEAKMQALKAHGVEILTCCESDGRVDLADLFVKLGARGVQSVLLEGGSH 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353 +A + + + L+D +++ + ++G G+ EG +R G D+ +E Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQMRVKRVGVDLLVE 358 Query: 354 YIGKNLCLQ 362 + Q Sbjct: 359 GVPAKTKSQ 367 >gi|303241094|ref|ZP_07327603.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus CD2] gi|302591354|gb|EFL61093.1| riboflavin biosynthesis protein RibD [Acetivibrio cellulolyticus CD2] Length = 362 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS A+ ++ G T+ NP V +IVKD +I G G HAEV A + A E+ G Sbjct: 1 MSRAIELAKKGWGRTNPNPLVGAVIVKDERIIAEGFHEVIGGAHAEVSAFKNAVEDVAGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YV LEPCSHYGR+PPCA+ IIE I++VVV + DP+ +VSGRG+Q L GI + + Sbjct: 61 TLYVNLEPCSHYGRTPPCAKAIIEAKIKKVVVAMIDPNPKVSGRGVQMLRDAGIEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E K ++ V K+ + LK A++ D I S +T S+ VH++R + Sbjct: 121 LEDEAKKLNEIFINYVVNKKPFVILKTAMTIDGKIASVSGDSKWVTSEASRGYVHIIRDR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +I+VGI T++ D+P LT RLN P+RI++D + DS+++ + A V++ T Sbjct: 181 VASIMVGINTIVKDNPMLTTRLNDKVGTDPIRIVVDSKGIIPEDSRVLNSDSKAVVVLAT 240 Query: 250 ENDD-PVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ + K + II D DL KL L + S+L+EGG + + + Sbjct: 241 TSNILKEKEMYLIDKGVKIIKADGADGRVDLVKLTEELYKLEIDSILLEGGGNLNAAALE 300 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353 + +VD + + + ++G +P+E + V +G D+ +E Sbjct: 301 AGIVDKAMFFIAPKILGGKEAVTPVEGRGINLMSDAVKLKDVSVSRYGEDILVE 354 >gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter formigenes OXCC13] gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter formigenes OXCC13] Length = 363 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 185/359 (51%), Gaps = 14/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + +FM AL +R LTS NP V C+IV+DG +IG G T G HAEV+AL + Sbjct: 2 ADHEKFMRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVA 61 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G++ RGAT YVTLEPCSH GR+PPCA +I ++RVV ++DP+V+V+G+GL L Sbjct: 62 KRGQDCRGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKA 121 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ ++ E + +L+R R + +K+A S D + S IT ++ Sbjct: 122 AGIEVLCGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAAR 181 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R ++DAI+ GIGTV+ D+P L RL P RI++D K +D+++++ Sbjct: 182 RDGHEWRMRADAIMTGIGTVIKDNPRLNVRLPD-TIRQPKRIVVDSQLKTPIDARVLENG 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I + N P A ++K + + DL ++ +L + + + VE GA Sbjct: 241 GD--TWIFSANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGA 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE---GYLEKNFMCVRRDYFGSDVCL 352 + + I + VD +++Y + +G G L + + +F +D+ + Sbjct: 299 TLNGALIQAGFVDEMLIYLAPCFLGSGKNMVSLNDIANLADKISFEFHEIRTIENDIRI 357 >gi|229092353|ref|ZP_04223525.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42] gi|228691055|gb|EEL44822.1| Riboflavin biosynthesis protein [Bacillus cereus Rock3-42] Length = 350 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 119/341 (34%), Positives = 182/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATFLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+R+ILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVTDEEAPTWIFTTSNHAAEKRKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY + Sbjct: 240 ESAGVKVFVISGEKHINLYEMLDVLGQKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + D+ +GK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 336 >gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13] Length = 367 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 188/358 (52%), Gaps = 13/358 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG- 64 D +M A+ ++ G TS NP V ++VK+G ++G G G HAEV A++ AG Sbjct: 2 DDQYYMKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMAGV 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++A G+T YVTLEPCSH+G++PPC+ +I+ + RVV+ DP+ V+GRG++ L + GI Sbjct: 62 DKANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + E E + + +TLK A S D S ITG S+ V Sbjct: 122 EVELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R Q DAILVG+GTVLADDP L RL +P+RIILD H + LDSK++ T A Sbjct: 182 HQYRHQHDAILVGVGTVLADDPSLDTRLPNG-GKNPIRIILDSHLRTPLDSKVL-TDGKA 239 Query: 244 PVIIVTENDDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P IVT + + +AF + + + ++ +LL++L +TSL VEGGA V Sbjct: 240 PTWIVTGSKPDLEKMAFLEGQEGVRVFTLPMEKVEVNELLSLLGEEEITSLFVEGGATVN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 SF+ + + +I Y + +IG P+ + F G D+ + Sbjct: 300 GSFLKEKAIQQLITYIAPKLIGGKAAPTLVGGEGFATMDEVMEFEIKEVTKIGPDLKI 357 >gi|293390135|ref|ZP_06634469.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950669|gb|EFE00788.1| riboflavin biosynthesis protein RibD [Aggregatibacter actinomycetemcomitans D7S-1] Length = 374 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 188/372 (50%), Gaps = 19/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D FM AL ++ T+ NPSV C++VK+G ++G+G G PHAEV AL E Sbjct: 5 FSPQDVAFMQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC H+GR+PPCA+ + E G+ +V+ + DP+ +V+G+GLQ L+ Sbjct: 65 AGENARGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADA 124 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + E +L R + + LK+A+S D MA S ITG ++ Sbjct: 125 GIQSAVGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARM 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL TVLADDP L R L P+R+ILD K+ Sbjct: 185 DVQQYRAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKV 244 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289 D K+ T APV + E+D + + + + L+ L+T L R + + Sbjct: 245 RSDFKVFLTD--APVWLAGEDDFQLTGFPASTEYLKLDRSHGESRLQALMTELGKRQINT 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDY 345 L VE GA +A + I LVD +I+Y + ++G+ L + + Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCEP 362 Query: 346 FGSDVCLEYIGK 357 G D+ L YI K Sbjct: 363 TGDDLKLIYIRK 374 >gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E] gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E] Length = 373 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 192/373 (51%), Gaps = 21/373 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM A+ + T+ NPSV C++VK G ++G+G G PHAEV A+ E Sbjct: 4 FTEQDRAFMQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMAMRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GATAYVTLEPCSH+GR+PPCA+ +IE G+ +V+ ++DP+ V+G+GL+ L Q Sbjct: 64 AGKNAKGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKMLQQA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +++ + + +L R ++ LK+A++ D + S ITG ++ Sbjct: 124 GIETAVGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGESARI 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL GTVLAD+P L R E P+R+I+D ++ Sbjct: 184 DVQQERAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSKQQI 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289 S + K + +PV + + + I ++ + L+ L+ L R + S Sbjct: 244 SSQLNLFK--IDSPVWLAGIQPRDLTDFPANCEIICLMPEKEQSLLQALMIELGKRQINS 301 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE GA +A + I LVD ++LY + ++G+ +P L + + + Sbjct: 302 VWVEAGAKLAGALIEQNLVDELVLYIAPKLLGDEAKGLCHLPH-LTKLADAPLWRLQSME 360 Query: 345 YFGSDVCLEYIGK 357 G D+ + Y+ K Sbjct: 361 KVGDDIKMIYMRK 373 >gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484] gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484] Length = 353 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 130/353 (36%), Positives = 189/353 (53%), Gaps = 9/353 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R GLT NP+V C++VKDG +I G G PHAEV AL +AG+ A+ + Sbjct: 1 MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKAGQNAKDS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSHYGR+PPC IIE G++RVVV DP+ +V G G++ L GI + + Sbjct: 61 TLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVDVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + + + R +ITLK A S D + S IT S+ H LRA+ Sbjct: 121 LEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVG+ TV+ DDP LT R L E P+R++LDP+ + L + ++ A I+VT Sbjct: 181 ATAILVGVNTVVKDDPLLTVR-AFLWERQPIRVVLDPYLRTPLQANLMVDTS-AKTILVT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + ++++ +C DL+ L+ + + + L+VEGGA FI Sbjct: 239 CSQKEDKVKKLEDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIEE 298 Query: 306 RLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356 L D I+++ ++IG G + SP E ++ R G DV +EY Sbjct: 299 GLWDRIVVFLGPLLIGNGIRVRSPGAEKLMDAIPLRKRRLWQLGEDVAIEYTR 351 >gi|237739215|ref|ZP_04569696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 2_1_31] gi|229423815|gb|EEO38862.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 2_1_31] Length = 369 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 199/365 (54%), Gaps = 17/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +FM+ A+ + +G + NP V ++VKDG +IG G G PHAEV AL EAG Sbjct: 4 TVDKKFMARAIELAFRGLGGVNPNPLVGAVVVKDGKIIGEGWHKKYGGPHAEVWALNEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YVTLEPCSH G++PPCA+ I+E GI+R V+ DP+ V+G+G++ + GI Sbjct: 64 EEAKGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVIACIDPNPLVAGKGIKIIEDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E K +L K ++ LK ++ D I S IT +++ +V Sbjct: 124 KVDLGILEKEAKEVNKVFLKYIENKIPYLFLKCGITLDGKIATRRGKSKWITNELAREKV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKT 239 LR + AI+VGI TVL D+P L RL+ G+++ +P R+++DP+ + +DSK + Sbjct: 184 QFLRTKFSAIMVGINTVLKDNPSLDSRLDEEKFGIEKRNPFRVVVDPNLESPIDSKFLHF 243 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGG 295 IIVT ND+ + +IY + + +K +L L + S+L+EGG Sbjct: 244 NDN-KAIIVTSNDNRNLEKVKEYENLGTRLIYLEGKIFKMKDILKELGKLNIDSVLLEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSD 349 + + + ++D+ ++ + +IG+ P G+ + V + + +G + Sbjct: 303 SGLISTAFKENVIDAGEIFIAPKIIGD-NSSIPFINGFNFDSMEEVFKLSNPKFNIYGDN 361 Query: 350 VCLEY 354 + +E+ Sbjct: 362 ISVEF 366 >gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes 130Z] gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes 130Z] Length = 375 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 186/374 (49%), Gaps = 19/374 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M AL +R T+ NP+V C++VK ++G G G PHAEV A+ + Sbjct: 4 FTEQDQAYMQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMAIRD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ +GATAYVTLEPCSHYGR+PPCAQ +I G+ +V++ DP+ +V+GRGL+ L Sbjct: 64 AGDNTQGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKMLQDA 123 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +E + +L R + LK+A+S D MA S ITG ++ Sbjct: 124 GIESAVGLLAEKAEAVNLGFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEAARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TVLADDP+L R L + P+R+ILD ++ Sbjct: 184 DVQEGRAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRRHRV 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289 ++ + + +PV +V+E + A ++I + + L L+ L R + + Sbjct: 244 QPHHRLFR--IESPVWLVSEKPRDMSAFPAFCEHIQLKTTENPTALYALMQELGKRQINT 301 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSP-LEEGYLEKNFMCVRRDY 345 + VE GA +A + I L D +I+Y + ++G P L + Sbjct: 302 IWVEAGATLAGALIEQNLADELIIYMAPKLLGHQARGLCKLPHLTRLADAPQWTLQSAVK 361 Query: 346 FGSDVCLEYIGKNL 359 G D+ Y K++ Sbjct: 362 IGEDLKTVYTRKSV 375 >gi|197119395|ref|YP_002139822.1| bifunctional 2, 5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase/5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter bemidjiensis Bem] gi|197088755|gb|ACH40026.1| 2,5-diamino-6-(5'-phosphoribosylamino)-4-(3H)-pyrimidinone deaminase and 5-amino-6-(5'-phosphoribosylamino)uracil reductase [Geobacter bemidjiensis Bem] Length = 369 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 200/369 (54%), Gaps = 11/369 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ + M AL +R +G T+ NP+V C+IV++G V+G G G PHAEV AL+ Sbjct: 1 MADLHLKMMRLALAEARKGIGKTAPNPAVGCVIVRNGEVVGTGWHKKAGTPHAEVHALKA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A GA AYVTLEPCSH+G++PPCA+ +IE + RV V + DP+ VSGRG+Q L Sbjct: 61 AGDKAAGADAYVTLEPCSHFGKTPPCAKALIEARVARVFVAMVDPNPLVSGRGIQMLKDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ E + ++ K ++ LK A++ D A S +T ++ Sbjct: 121 GIAVEVGLLKEESRELNLPFIKWIQTKLPYVVLKSALTLDGKSATASGDSKWVTSDRARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LR + DAI+VG+GTV+ DDP LTCR+ G P+R+I+D ++ L + I+ Sbjct: 181 EVHRLRGRLDAIMVGVGTVVKDDPLLTCRVPG--GKDPLRVIVDSTLRIPLHAAILGVKS 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 A +I T + D A + + I+ C DL L L RGV S+L+EGG+ Sbjct: 239 KAETVIATCSCDHAKMEALKAHGVEILTCCESDGRVDLADLFEKLGARGVQSVLLEGGSH 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLE 353 +A + + + L+D +++ + ++G G+ EG VR G D+ +E Sbjct: 299 LAGAALRAGLIDKCMIFLAPKLVGGAGMGLFAGEGATLMADAIRLEQVRVKRVGVDLLVE 358 Query: 354 YIGKNLCLQ 362 + Q Sbjct: 359 GVPVKTKSQ 367 >gi|2493562|sp|P70814|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens] Length = 371 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 177/362 (48%), Gaps = 11/362 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ A+ +R G T NP V ++VK ++G G G HAEV A+ AG Sbjct: 1 MEEYYMNTAIELARRGEGQTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GA YVTLEPCSHYG++PPCA+ I++ GI+RV + V+DP+ V+G+G+ L + GI Sbjct: 61 LAKGADLYVTLEPCSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ + + +L ++TLK A S D S IT ++ Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R ILVG GTV AD+P LTCRL P+R+ILD + + ++ T AP Sbjct: 181 QYRKSHQRILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTVPETANVL-TDGAAP 238 Query: 245 VIIVTENDDPVL---ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T V L + + D + ++L+IL G+ S+ VEGGA+V S Sbjct: 239 TWIFTAAGSDVRKKDRLTALGIKVFTLETDRIHIPEVLSILAENGIMSVYVEGGASVHGS 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356 F+ + D + Y + I+IG PS + + + + G D+ L I Sbjct: 299 FVKAGCFDELHFYFAPILIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIP 358 Query: 357 KN 358 K+ Sbjct: 359 KD 360 >gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC 23970] gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC 23970] Length = 369 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 133/366 (36%), Positives = 190/366 (51%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I + G V+G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-TFATLRQPARIVLDSRLRLPQNSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P +I T D +RK I DL +L+ +L G ++VE G Sbjct: 240 QSPTLIATLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 A + +F+ L D I+LYRS ++G G +P + V + G DV Sbjct: 300 AKLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|296126557|ref|YP_003633809.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM 12563] gi|296018373|gb|ADG71610.1| riboflavin biosynthesis protein RibD [Brachyspira murdochii DSM 12563] Length = 368 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 182/362 (50%), Gaps = 16/362 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 ++M A+ ++ G TS NP V +IVKD +IG G G HAE+ A +A G Sbjct: 7 EKYMRMAIEEAKKGEGFTSPNPLVGAVIVKDDKIIGIGYHQKYGENHAEINAFLDAQKKG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA YVTLEPCSHYG++PPCA II+ I++V++ D + +V+G G++ L GI Sbjct: 67 EDVEGAAIYVTLEPCSHYGKTPPCADAIIKNKIKKVIIGCVDSNPKVAGNGIKKLKDAGI 126 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E + KR + +K A++ D I + S IT ++ Sbjct: 127 EVVVNVLEEECRKLNEVFFYYIANKRPFVVMKYAMTIDGKIASSSGKSKWITSEKAREHS 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + AI+VGI TV+ D+P L CRL +P+RIILD K+ L+S I KTA Sbjct: 187 HRFRNKYSAIMVGINTVIEDNPTLNCRLP--NTRNPIRIILDSSLKIDLNSNICKTAKEI 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVG-RGVTSLLVEGGAAV 298 I T ++D I II + +LK+L+ IL + + S+ VEGGA++ Sbjct: 245 KTFIATISNDEKKIKEIESLGIEIIKTESDNGRVNLKELMKILGEDKNIDSVYVEGGASL 304 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN---FMCV--RRDYFGSDVCLE 353 S I RLV+ +++Y + + G SP+ ++ F + D+ LE Sbjct: 305 HASLIEERLVNKVLVYIAPKIFGGIKAKSPIGGEGIDDPNNAFKLIGGDITKIDEDLFLE 364 Query: 354 YI 355 Y Sbjct: 365 YY 366 >gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus ATCC 35316] gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus ATCC 35316] Length = 367 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 184/365 (50%), Gaps = 20/365 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEIYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V+GRGL L Q+GI Sbjct: 62 KARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M + + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMQDAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP +T R + L P+RI++D +++ + Sbjct: 182 RLRAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPE 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I+ + D ++I + + DL L+ +L + V S+ V Sbjct: 242 HRIVHQPGET---LFARTKDDSRQWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + +++G + G G Sbjct: 299 EAGPTLAGALLQAGLVDELIVYVAPVLLGNDARGLFVLPGLEKLADAPQLKFSEIRPVGP 358 Query: 349 DVCLE 353 DVCL Sbjct: 359 DVCLH 363 >gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae ATCC 35236] gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae ATCC 35236] Length = 369 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R TS NP+V C++V++G ++G G G PHAEV AL AGE+ Sbjct: 4 DEFYMARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R ++ LK+A S D MA S IT ++ V Sbjct: 124 DHGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R L P+RIILD H +++ + Sbjct: 184 FRAQSAAILSTSATVLADDPSLTVRWQELDAQTQALYPQDRLRQPVRIILDSHNRVTPEH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+I+ P + + D ++ + + + DL L+ L R + S+ VE Sbjct: 244 KVIQQD--GPCWLARVDADEQPWPDNVEQLLLPRHNNGVDLVLLMMQLARRQINSIWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +ILY + ++G + L + F+ G D+ Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCHLAGLTQLRDAPEFVFSDVRQVGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|326201832|ref|ZP_08191702.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM 2782] gi|325987627|gb|EGD48453.1| riboflavin biosynthesis protein RibD [Clostridium papyrosolvens DSM 2782] Length = 367 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 187/366 (51%), Gaps = 12/366 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + +M A S+ G T+ NP V +IVKDG +I G G HAEV A + A Sbjct: 2 NIHEFYMKRAFEISKGGWGRTNPNPLVGAVIVKDGEIISEGFHEALGGAHAEVCAFQNAT 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT YV LEPCSHYGR+PPCA+ I E GI+ VVV + DP+ +VSG+G+Q L I Sbjct: 62 SDISGATIYVNLEPCSHYGRTPPCAKAIAESGIKEVVVAMVDPNPKVSGKGIQILKDANI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E + ++ ++ + +K A++ D I S I+ S+ V Sbjct: 122 NVIVGVLEEEARRLNEIFIHYITKQLPFVIMKTAMTLDGKIASVTGDSRWISSEPSREYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R + +I+VG+ T++ D+P LT R + P+RI++D ++ +DS++I A Sbjct: 182 HKIRNRVSSIMVGVNTIIKDNPSLTARPSSGDGIDPVRIVVDSRGRIPMDSRVINGDSNA 241 Query: 244 PVIIVTE---NDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +I+ T N D L R I I +L +L+ L + S+L+EGG + Sbjct: 242 GLILATTDRINKDKETQLLSRGVRIIKTIEKSGKVNLGELMRELYKLEIDSVLLEGGGNL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 S + + +V+ ++ + S +IG +P+ +E+ +R + F DV +E Sbjct: 302 NFSALEAGIVNKVMTFVSPKIIGGSSAVTPVGGEGIEEMKDAIALSDIRVEGFDRDVLIE 361 Query: 354 -YIGKN 358 YI Sbjct: 362 GYIADE 367 >gi|229174066|ref|ZP_04301602.1| Riboflavin biosynthesis protein [Bacillus cereus MM3] gi|228609398|gb|EEK66684.1| Riboflavin biosynthesis protein [Bacillus cereus MM3] Length = 350 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 118/341 (34%), Positives = 183/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSG G++ L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGSGIKILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYIMTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+R+ILD ++ +++ ++ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRVILDSTLRIPMEANVVADREAPTWIFTTSNYAAEKRKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI ++L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGRKGVSSLLIEGGGEVNASFIENKLMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + D+ +GK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTQVGKD 336 >gi|16079385|ref|NP_390209.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. subtilis str. 168] gi|221310245|ref|ZP_03592092.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. 168] gi|221314569|ref|ZP_03596374.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319491|ref|ZP_03600785.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. JH642] gi|221323767|ref|ZP_03605061.1| riboflavin-specific deaminase [Bacillus subtilis subsp. subtilis str. SMY] gi|132565|sp|P17618|RIBD_BACSU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|40085|emb|CAA35878.1| unnamed protein product [Bacillus subtilis] gi|410125|gb|AAA67481.1| ribG [Bacillus subtilis subsp. subtilis str. 168] gi|2634763|emb|CAB14260.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. subtilis str. 168] gi|34873545|gb|AAQ83285.1| RibG [Cloning vector pRFN4] Length = 361 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ + + +L ++TLK A S D I + S IT ++ Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + + + +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 + II Y + +IG PS + + G D+ L Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354 >gi|323488255|ref|ZP_08093505.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis MPA1U2] gi|323398113|gb|EGA90909.1| riboflavin biosynthesis protein RibD [Planococcus donghaensis MPA1U2] Length = 367 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 193/364 (53%), Gaps = 12/364 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ D +M+ AL ++ G T NP V +IV D ++G G G PHAE+ AL Sbjct: 1 MSNHD-FYMNLALTNAQTLKGQTDPNPLVGSVIVNDNRIVGIGTHLKAGEPHAEIHALRM 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ++GAT YVTLEPCSH+GR+ PCAQ II+ GI +VV+ DP+ V+G G++ L + Sbjct: 60 AGDMSQGATIYVTLEPCSHFGRTGPCAQAIIDAGIEKVVIATLDPNPIVAGNGVRMLKEA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + E E + V K +TLK A + D I S IT ++ Sbjct: 120 GIEVIVGVREEEAIKMNEVFNKFIVTKTPFVTLKAASTLDGKIATHSLDSKWITAEEARL 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VHL+R+Q AILVG+GTV+ DDPELT R++ +P+RI+LD ++ LDSK++ + Sbjct: 180 DVHLMRSQHMAILVGVGTVIEDDPELTARIS--NGRNPIRIVLDSTLRIPLDSKLVTDGI 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAV 298 + I ++N D A + + I D+ ++ L +G++SL +EGG + Sbjct: 238 VDTWIFTSQNYDAEKRQALEELGVLIFETSHDTQVDVIDVVRTLGEKGISSLFIEGGGTI 297 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353 +F+ + L+D ++ Y + ++G P+ +E +E + G D Sbjct: 298 NAAFLENDLIDKVVFYFAPKLVGGKLAPTFIEGTGVEWMKDAIELRDGEFSKVGKDFKFT 357 Query: 354 YIGK 357 + Sbjct: 358 GYPE 361 >gi|163789730|ref|ZP_02184167.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Carnobacterium sp. AT7] gi|159874952|gb|EDP69019.1| Riboflavin biosynthesis protein RIBD (pirimidine deaminase and pirimidine reductase) [Carnobacterium sp. AT7] Length = 351 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 123/352 (34%), Positives = 191/352 (54%), Gaps = 14/352 (3%) Query: 18 SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 +R G T+ NP V +IVK G VIG+G G PHAEV A+ A E+ GAT YVTLE Sbjct: 2 ARKGKGWTTPNPLVGAIIVKGGRVIGQGYHQKYGQPHAEVNAIASAKEDVTGATLYVTLE 61 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PCSH+G++PPC+ +I+ I+RVVV DP+ V+G+G++ L GI +V ++E E + Sbjct: 62 PCSHFGKTPPCSDLLIDKNIKRVVVGTLDPNPLVAGKGIERLRSNGIEVVTGVLEEESQK 121 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 ++ V K + +K A+S D I S I+G S+ QVH LR + I+VG Sbjct: 122 LNEIFIKYIVTKEPFVVMKNAMSLDGKIATVTGESQWISGESSRKQVHSLRHELAGIMVG 181 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPV 255 I T++ DDP+LT R L +P+RI++D ++ + SK++ A I+ T + Sbjct: 182 IETIIKDDPQLTSRT--LNSRNPIRIVVDSQLRIPIASKVLTQQDKAKTIVATTRRANKE 239 Query: 256 LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 ++ +I ++ + DLK+L+ +L +G+ S+L+EGGA + S + +VD I Sbjct: 240 KLDTLKQMDIEVLVTKEKGGRVDLKELMKLLGAKGIDSILLEGGANLNFSALEEGIVDKI 299 Query: 312 ILYRSQIVIGEGGIPSPLEEGY---LEKNFMCVRRD--YFGSDVCLE-YIGK 357 Y + +IG + +E L+ F R G D+ +E YI K Sbjct: 300 QSYIAPKIIGGKEAKTAVEGAGVHSLKNAFQIDRMTPVMVGEDLFVEGYIIK 351 >gi|163815505|ref|ZP_02206878.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759] gi|158449142|gb|EDP26137.1| hypothetical protein COPEUT_01670 [Coprococcus eutactus ATCC 27759] Length = 382 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 185/371 (49%), Gaps = 21/371 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 F+ +M A+ ++ G + NP V +IVK G +IG G G HAE A Sbjct: 9 EFNLAYMRRAIELAKKGTGAVNPNPLVGAVIVKAGRIIGEGYHVRYGELHAERAAFASLA 68 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + EA GA YVTLEPC H+G+ PPC IIE IR+V DDP+ V+G+G + L Sbjct: 69 DPAEAEGAVMYVTLEPCCHFGKQPPCVDAIIEHKIRKVYCGSDDPNAMVAGKGFRRLRDA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E + + K+ ++T+K A++ D I S ITG S+ Sbjct: 129 GIEVYTHCLKDECDALNDIFFKYIIAKKPYVTMKYAMTMDGRIATHIGASKWITGEASRA 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSK 235 V LR + I+ GIGTVLADDP LTCR+ + +P+RII D ++ DS Sbjct: 189 YVMELRNRHKGIMAGIGTVLADDPMLTCRIENGIDRDTDNVRNPIRIICDSKLRIPEDSN 248 Query: 236 IIKTALLAPVIIVTEND---DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVT 288 I++TA+ I+ T D D R+K+++II D DL +L+ IL G+G+ Sbjct: 249 IVQTAVEIETIVATTPDGAADTAKCDRLREKSVSIIETDSTDGNVDLGQLMDILGGKGID 308 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRR 343 +L+EGG + +S ++ LVD ++ + + G G SP+ ++ F Sbjct: 309 GILLEGGGELNYSMVSEGLVDEACVFIAPKIFGGEGKYSPVSGTGVDVPADAHMFRLEEV 368 Query: 344 DYFGSDVCLEY 354 F DV L Y Sbjct: 369 RRFDEDVMLRY 379 >gi|110598480|ref|ZP_01386751.1| riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [Chlorobium ferrooxidans DSM 13031] gi|110339930|gb|EAT58434.1| riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [Chlorobium ferrooxidans DSM 13031] Length = 369 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 196/372 (52%), Gaps = 17/372 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M+ + + G S NP V +IV DG++IG G G PHAEV A+ Sbjct: 2 MSLLCDDTVYMNRCIELALKGGGTVSPNPMVGSVIVCDGVIIGEGFHERYGAPHAEVNAI 61 Query: 61 EEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ R +T YV LEPCSH+G++PPC+ IIE GI RVVV DP V V+G+G+ Sbjct: 62 ASVADQELLRRSTLYVNLEPCSHFGKTPPCSDLIIEKGIPRVVVGCRDPFVSVAGKGIAK 121 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + ++E+ A++ ++LK+A + D I + S ITG Sbjct: 122 LLGAGIAVTEGVLEAACVKLNEAFIKSHTTGLPFVSLKLAETLDGKIATSLGASKWITGE 181 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ +VH LRA+ DA++VG TV DD ELT R +P+R++LD L ++SKI Sbjct: 182 AARMEVHRLRARYDAVVVGEATVRCDDAELTVR--HCSGRNPLRVVLDRRLSLPVESKIF 239 Query: 238 KTALLAPVIIVTENDDP--VLALAFRKKNINII----YCDCRDLKKLLTILVGRGVTSLL 291 T AP I+ + A R++ + ++ + DL+++L L G+ S+L Sbjct: 240 NTE--APTILFASSAWEGLEKAGLLRERGVTVLFVREHAGELDLRQVLEELHKHGILSIL 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFG 347 VEGG+ ++ SFI RLVD I ++ + + G + S G + V + +FG Sbjct: 298 VEGGSRLSASFIRERLVDKIYMFIAPKLFGGDALSSFAPLGISIPDDAVVLKFETPRFFG 357 Query: 348 SDVCLEYIGKNL 359 SD+ LE ++L Sbjct: 358 SDLLLEAYVQSL 369 >gi|237742612|ref|ZP_04573093.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 4_1_13] gi|229430260|gb|EEO40472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 4_1_13] Length = 369 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 194/364 (53%), Gaps = 17/364 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EA E Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAEE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIIENAGIT 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E K + + ++ LK ++ D I S IT I++ +V Sbjct: 125 VKLGVLEKEAKEINKIFFKYIENRIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTA 240 LR + AI+VGI T+L D+P L RL+ G+++ +P R+++DP+ + +++K + Sbjct: 185 FLRTKFMAIMVGINTILKDNPSLDSRLDEKKFGIEKRNPFRVVIDPNLESPIEAKFLNFN 244 Query: 241 LLAPVIIVTENDDP--VLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGA 296 II+T ND+ ++ I+ + + K +L L + S+L+EGG+ Sbjct: 245 -DGKAIIITSNDNKGLEKIEKYKNLGTRFIFLEGKIFKMEDILKELGKLEIDSVLLEGGS 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV------RRDYFGSDV 350 + + ++D+ ++ + +IG+ P G+ + V + + +G ++ Sbjct: 304 GLISTAFKENIIDAGEIFIAPKIIGDSSA-VPFINGFNFDSMEDVFKLSNPKFNIYGDNI 362 Query: 351 CLEY 354 +E+ Sbjct: 363 SIEF 366 >gi|297584480|ref|YP_003700260.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens MLS10] gi|297142937|gb|ADH99694.1| riboflavin biosynthesis protein RibD [Bacillus selenitireducens MLS10] Length = 361 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 179/359 (49%), Gaps = 9/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + G TS NP V C+IVK + G G G HAE QAL A EE Sbjct: 3 DDHYMKLAIEIAEATKGQTSPNPQVGCVIVKHNQIKGIGAHLKAGEWHAERQALHMAKEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPCSH+G++PPC+ +IE GI RVV DP+ VSGRG++ L GI V Sbjct: 63 ANGATAYVTLEPCSHHGKTPPCSDALIEAGISRVVTASSDPNPDVSGRGIRRLRDAGIEV 122 Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + ++ ++TLK A S D I A S I+ S+ VH Sbjct: 123 VEGVQKERADRMNRWFFHAITKQTPYVTLKFATSLDGKIATATGESQWISNEKSRADVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q D ILVG TV+ D+P LT RL +P+RII+D + DS ++ Sbjct: 183 IRHQVDGILVGRETVVQDNPSLTTRLPAG-GKNPIRIIMDRTLRTPPDSIMLNDGQSPVW 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+ II +D ++++L +L +G+++LLVEGG + F+ Sbjct: 242 IVTNAGASQERKEMLIASGAEIIEITDKDRFIEEMLEVLGRQGISTLLVEGGGTINDQFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357 L +I Y++ ++IG S +++ + + ++F DV Y+ K Sbjct: 302 TRGLFHEVIHYQAPVIIGGKDAQSSFSGAGVQQLANAPRLLLDQEEWFDDDVKRTYVYK 360 >gi|153940820|ref|YP_001392147.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. Langeland] gi|152936716|gb|ABS42214.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. Langeland] gi|295320152|gb|ADG00530.1| riboflavin biosynthesis protein RibD [Clostridium botulinum F str. 230613] Length = 365 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 190/358 (53%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+ Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +V +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGI TV+ D+P LT R+ G SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETFNKRAIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 +P A ++ + + L +L+ LV GV S+L+EGG+ + Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIE 361 >gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893] gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893] Length = 371 Score = 353 bits (906), Expect = 2e-95, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 187/365 (51%), Gaps = 19/365 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM+ A++ + T NP V C+I + V+G G G HAE +AL +AG Sbjct: 4 AQDTAFMARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +ARGATAYVTLEPCSH+GR+PPCA+ +IE GI V DP+ VSGRGL L + GI Sbjct: 64 PDARGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ E ++ R R ++ LK+A S D MA S ITG S+ V Sbjct: 124 RVTEGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRRDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSK 235 LRA SDA+L G+GTVLAD+P LT R L + P+R+I D + + Sbjct: 184 QRLRAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPGAT 243 Query: 236 IIKTA-----LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 I++ +P + D LA + D+++LL L G+ L Sbjct: 244 ILQGGNVQVYCASPTLATAPAQD--LAALGVGLTGVAWKDNGIDVRELLDSLGELGINEL 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347 LVE G +A +FI+ RLVD + LY++ + +G G P+ PLE + + + R G Sbjct: 302 LVEAGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWKVLDRRQLG 361 Query: 348 SDVCL 352 D L Sbjct: 362 EDQRL 366 >gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC 23834] gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC 23834] Length = 364 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 189/360 (52%), Gaps = 11/360 (3%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP S D M A+ + TS NP V C+I + G ++G+G G PHAEV A Sbjct: 1 MPQFSHADHALMQQAIALAWQGRFSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG A+GATAYVTLEPC+H+GR+PPCA+ +I G+RRVV + DP+ V G+GL L Sbjct: 61 LRQAGSAAQGATAYVTLEPCAHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAIL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + +ME E + +L+R R + LK A S D +A S ITG Sbjct: 121 EAAGIQVACGLMEREARQLNRGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ V + RA+S A+L GIGTVLAD+P LT R + P+R++LD +L S ++ Sbjct: 181 ARHDVQIQRAESCAVLTGIGTVLADNPRLTVR-DFPTLRPPLRVLLDSRLRLPAGSHLLD 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + AP +I T +D P A A + L +L L RG+ L++E GA + Sbjct: 240 GS--APTLIYTLSDRPAPAGAAEICRLEADAQGRLSLNAVLADLAARGIGELMLEAGATL 297 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352 +F+ LVD I+ Y++ ++G P+ E ++ V + G D+ Sbjct: 298 GSAFLAQDLVDEIVCYQAPKLLGGAQSPTLFRLPENPAALSREPDWHTVGIEQLGDDIKW 357 >gi|150016108|ref|YP_001308362.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii NCIMB 8052] gi|149902573|gb|ABR33406.1| riboflavin biosynthesis protein RibD [Clostridium beijerinckii NCIMB 8052] Length = 361 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 118/363 (32%), Positives = 187/363 (51%), Gaps = 13/363 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL ++ +G + NP V +IVKD +IG G G HAE A++ A + Sbjct: 1 MDEKYMEIALELAKRGIGKVNPNPLVGAVIVKDNEIIGEGYHECYGEAHAERNAVKNATK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YVTLEPC+HYG++PPC IIE +RVV+ + DP+ VSG+ ++ L Q GI Sbjct: 61 SVEESTIYVTLEPCAHYGKTPPCVDLIIEKKFKRVVIGMLDPNELVSGKSVEKLKQHGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E E K ++ K + LK +S D I S IT S+ Sbjct: 121 VVVGIKEKECKELNEIFIKYITSKIPFVILKSGMSIDGKIATYSGQSKWITSKESREDSQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + +I+VG+ TV+ D+PELTCR+N ++ +RII+D + ++ L+SK++ + A Sbjct: 181 HLRNRFHSIMVGVNTVIEDNPELTCRINDGKKL--IRIIVDSNLRIPLESKVLTNSDKAA 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 +++ T D R I +I +D LK+L+ + G+ S+L+EGG + Sbjct: 239 IVVTTLKSDKEKKKKLRSMGIKVIEVADKDNRVNLKELVKRVGEEGIDSILIEGGGTLNF 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE-Y 354 S + R+VD + Y + +IG + + K VR + G D+ LE Y Sbjct: 299 SALEERIVDKVRFYIAPKIIGGQSSRNSIAGKGFFKLDDAVRLEDINYRTIGEDLVLEGY 358 Query: 355 IGK 357 + K Sbjct: 359 VAK 361 >gi|228916001|ref|ZP_04079574.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843596|gb|EEM88672.1| Riboflavin biosynthesis protein [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 350 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 122/341 (35%), Positives = 183/341 (53%), Gaps = 10/341 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ARG T YVTLEPCSH Sbjct: 2 KGQTTPNPLVGSVIVNDNRIVGIGAHMKAGEPHAEIHAIRMAGEQARGGTIYVTLEPCSH 61 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 +GR+ PCA+ I++ GI++VVV DP+ VSGRG+Q L GI ++ + E E K Sbjct: 62 HGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIQILQDAGIEVLVGVCEEESKKMNEV 121 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + + KR +T+K V+ D I + S IT ++ +VH +R ++ AILVG TV Sbjct: 122 FNKYILTKRPFVTIKSGVTLDGKIATSLSDSKWITSTEARQEVHQIRNENAAILVGANTV 181 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R+ +P+RIILD ++ +++ I+ I T N A Sbjct: 182 QKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANIVTDGEAPTWIFTTSNHAGEKKKAL 239 Query: 261 RKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L ++L +L +GV+SLL+EGG V SFI + L+D +ILY + Sbjct: 240 ENAGVKVFVTSGEKHINLYEMLDVLGEKGVSSLLIEGGGEVNASFIENELMDKLILYFAP 299 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +IG PS +E + K + D+ +GK+ Sbjct: 300 KIIGGRLAPSFVEGTGITKMQDAIEFK----DISFTPVGKD 336 >gi|321311800|ref|YP_004204087.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis BSn5] gi|320018074|gb|ADV93060.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis BSn5] Length = 361 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ + + +L ++TLK A S D I + S IT ++ Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + + + +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 + II Y + +IG PS + + G D+ L Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354 >gi|300865185|ref|ZP_07110005.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506] gi|300336816|emb|CBN55155.1| riboflavin biosynthesis protein [Oscillatoria sp. PCC 6506] Length = 388 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 186/362 (51%), Gaps = 8/362 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P FDA M + +R +G T+ NP V IV+DG+V+G G G PHAEV AL Sbjct: 26 PRQDFDAAMMRRCIELARCALGKTAPNPLVGSAIVRDGLVVGEGFHPGAGMPHAEVFALR 85 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE+A GAT YV LEPC+HYGR+PPC++ +I G+ +VVV + DP+ VSG G+ L + Sbjct: 86 EAGEKALGATVYVNLEPCNHYGRTPPCSEALIAAGVAKVVVGMVDPNPLVSGGGIARLRE 145 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V + E + A++ R + +R LK A++ D I + S +TG ++ Sbjct: 146 AGIEVVVGVEEEACRKLNEAFIHRILYRRPFGILKYAMTLDGKIATSSGHSAWVTGEEAR 205 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +QVH LR DA++VG TV D+P+LT G H+P+R+++ L S++ +T Sbjct: 206 SQVHGLRIACDAVIVGGNTVRLDNPQLTSHQEG--RHNPLRVVMSRTLDLPKSSRLWETG 263 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + +++ E +P + + ++ + L R S+L E G +A Sbjct: 264 DASTLVLTQEGTNPEFREFLGSRGVEVVDLSPLTPASAMAYLYDRSFLSVLWECGGILAA 323 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355 S I V I+ + + ++G G PSP+ + + V G+D +E Sbjct: 324 SAIADGSVQKILAFIAPKIVGGQGSPSPVGDLGFARMTEAIALERVSWHSVGADCLVEGY 383 Query: 356 GK 357 K Sbjct: 384 LK 385 >gi|292669813|ref|ZP_06603239.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541] gi|292648610|gb|EFF66582.1| riboflavin biosynthesis protein RibD [Selenomonas noxia ATCC 43541] Length = 370 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 135/362 (37%), Positives = 193/362 (53%), Gaps = 7/362 (1%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M ALR + + G TS NP V LIV+DG+V+ G G PHAE+ AL AG Sbjct: 6 ALDESYMREALRLAEFARGRTSPNPLVGALIVRDGVVVANGWHRAAGEPHAEIHALRMAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGA YVTLEPC+H+GR+ PCA+ +I G+ RVVV + DP+ V+GRG+ L GI Sbjct: 66 DLARGAALYVTLEPCAHHGRTGPCAEAVIAAGVARVVVALCDPNPLVAGRGIAMLEAAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E + +L KR +TLK A++ D I S ITG ++ +V Sbjct: 126 EVVTGVLEDEARRQNETFLKWITTKRPFVTLKTAMTLDGKIASRTGASAWITGESARMRV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R DAIL+GIGT+LADDP LT RL H P+RI+LD + + +K++ Sbjct: 186 HEYRDAYDAILIGIGTLLADDPSLTARLPDRPGHHPLRIVLDSEARTPISAKLVTDGAAP 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VI V+E DP R ++ + D+ LL L R TSL VEGGA S Sbjct: 246 TVIAVSERADPKRMNLLRACGAEVVTLGAERVDIGCLLDWLGERECTSLFVEGGAEANWS 305 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ D + + + +++G P+P+ + +R DV +E IG +L + Sbjct: 306 FLAGGHADKVHAFIAPMLMGGAAAPTPVGGAGFDSPQTALRL----GDVTVEQIGMDLLV 361 Query: 362 QE 363 Sbjct: 362 TG 363 >gi|291484757|dbj|BAI85832.1| riboflavin-specific deaminase [Bacillus subtilis subsp. natto BEST195] Length = 361 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 118/355 (33%), Positives = 174/355 (49%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGA 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 61 HAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIKEAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ + + +L ++TLK A S D I + S IT ++ Sbjct: 121 VREGILADQAESLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL + P+R+ILD + D+K+I + Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + + + +L IL G+ S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 + II Y + +IG PS + + G D+ L Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354 >gi|226950300|ref|YP_002805391.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str. Kyoto] gi|226842626|gb|ACO85292.1| riboflavin biosynthesis protein RibD [Clostridium botulinum A2 str. Kyoto] Length = 365 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 117/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G + NP V ++VK+ +IG G Y G HAEV AL EAGE+A+ Sbjct: 6 FYMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGSHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +V +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEDARYKVQQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGIGT++ D+P LT R+ G SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIGTIIKDNPLLTTRIEG--GRSPRAIIVDSNLRIPLESKILETLNKRAIYI 243 Query: 248 VTENDDP--VLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 T A ++ + + L +L+ L GV S+L+EGG+ + Sbjct: 244 ATTKKHNNFSKKNALENLGAKVLEFEENEEGKVPLNELMQYLGSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E N ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFNLQNLKFEKIGQDILIE 361 >gi|304407004|ref|ZP_07388658.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus YK9] gi|304343991|gb|EFM09831.1| riboflavin biosynthesis protein RibD [Paenibacillus curdlanolyticus YK9] Length = 373 Score = 353 bits (905), Expect = 3e-95, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 195/369 (52%), Gaps = 12/369 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M DA +M AL+ ++ G TS NP V C+IVK+G +IG G G HAEV AL Sbjct: 1 MSEVLNDAFYMRLALQMAQGATGQTSINPVVGCVIVKEGRIIGMGAHLKRGEGHAEVNAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 AG+EA GATAYVTLEPCSHY ++PPC +IE I RVVV DP+ +V+G G++ L Sbjct: 61 RMAGDEAEGATAYVTLEPCSHYRKKTPPCCDRLIEARIARVVVAAQDPNPQVAGTGVEKL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E Y + + +TLK A + D I S ITG Sbjct: 121 RAAGIAVSVGLLAEESHAMNERYNKYILSRLPFVTLKTASTLDGRIAAKTGDSRWITGPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ VH +R Q D I+VGIGT+LADDP+LT RL H P RII+D ++ LD++++ Sbjct: 181 SREAVHTMRHQHDGIMVGIGTLLADDPQLTTRLEVPALH-PARIIVDSALRIPLDARVVT 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGG 295 + +++ T +P + + + I+ C +L + + +L + S+L+EGG Sbjct: 240 DGMARTIVLTTTAANPEKRSSLQAAGVEIVDCGDGPHVNLTEAMRLLGDMEIGSILLEGG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI--PSPLEEGYLEK----NFMCVRRDYFGSD 349 + + + + LVD I L+ + +IG G + + EG+ + R + +G D Sbjct: 300 GQLNGAMLAAGLVDKISLFFAPKLIGGGEASPAAFVFEGFEKMADAITLESTRYEQYGDD 359 Query: 350 VCLEYIGKN 358 + + N Sbjct: 360 IAVIGYPSN 368 >gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256] gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256] Length = 365 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 140/363 (38%), Positives = 189/363 (52%), Gaps = 13/363 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + M AL +R TS NP V C+I ++G+G G PHAEV AL +AGE Sbjct: 5 IDTQMMQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L GI Sbjct: 65 MARGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIR 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L+R R + +K A S D +A S ITG ++ V Sbjct: 125 TESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA+S A+L GIGTVLAD+P L R P RI+LD + L S II L+P Sbjct: 185 TLRAESCAVLTGIGTVLADNPCLNVR-AFPTLRQPARIVLDSKLQTPLGSHIISDD-LSP 242 Query: 245 VIIVTENDDPVLALAFRK-KNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 IIVT DD + +I I+ DL LL L G ++VE GA + Sbjct: 243 TIIVTAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGATL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +FI S L D I+LY++ ++GEG +P+ E + + G DV Sbjct: 303 ASAFIESGLADEIVLYQAPKILGEGRNLLTLPANPAVLTSEGEWESRSVELIGQDVKWVL 362 Query: 355 IGK 357 K Sbjct: 363 RKK 365 >gi|310657724|ref|YP_003935445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Clostridium sticklandii DSM 519] gi|308824502|emb|CBH20540.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Clostridium sticklandii] Length = 382 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 175/366 (47%), Gaps = 11/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +FM AL + G + NP V +IVKDG VIG G G HAE++A+ Sbjct: 17 MLESDEKFMKLALSLAEKGRGYVNPNPLVGAVIVKDGKVIGEGYHTAFGKSHAEIEAINS 76 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E+ + AT YVTLEPC H G++PPC + II+ + RVVV DP+ VSG G++ L Q Sbjct: 77 ATEDIKSATMYVTLEPCCHQGKTPPCTEAIIKNQLARVVVATTDPNPLVSGSGIEKLKQS 136 Query: 123 GIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + + E KI ++ LK A+S D I S IT S+ Sbjct: 137 NIEITVGVLEEMAKIQNEVFIHYMTTNLPFTILKYAMSLDGKIACHTGDSKWITSEKSRT 196 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR+ A++ GIGT+L+DD L RL + P RI++D ++SLD+KII Sbjct: 197 DVHRLRSSVSAVVTGIGTILSDDASLNVRLIDSKGREPHRIVVDSAARISLDAKIINLDS 256 Query: 242 LAPVII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + I VTE II + DL++L L G+ S+L+E G Sbjct: 257 KSDTYIAVTEAASDGKLRKLEDYGAKIIMTKSKDGKVDLEELWKELGFLGMDSILIEAGE 316 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 ++ + + ++LV+ I Y + +IG SP+ N + + +D Sbjct: 317 QLSAALLEAKLVNKIRAYIAPKIIGGTNAKSPIGGYGASSMSEVINLKSMNFTHIENDFV 376 Query: 352 LEYIGK 357 +E K Sbjct: 377 VEGYIK 382 >gi|296453532|ref|YP_003660675.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. longum JDM301] gi|296182963|gb|ADG99844.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. longum JDM301] Length = 366 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 182/368 (49%), Gaps = 13/368 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DAR+M A+ ++ G + NP V +IVKD +IG+G G HAE AL + Sbjct: 2 DDARYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI Sbjct: 62 SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ E + + + ++ +K A++ D I S I+G S+ +VH Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRMAH--GRNPVRVVCDTRLRTPLTSRIVQTANDVR 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T DD A +R+ I+ D DL ++ L + S+L+EGG+A+ Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 S + R+VD +Y + + G G SP+ + V G D +E Sbjct: 300 SALEQRIVDEAHVYIAPKIFG-GTAKSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358 Query: 356 GKNLCLQE 363 C +E Sbjct: 359 VVYSCSRE 366 >gi|213691299|ref|YP_002321885.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522760|gb|ACJ51507.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457366|dbj|BAJ67987.1| riboflavin biosynthesis protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 366 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 182/368 (49%), Gaps = 13/368 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA++M A+ ++ G + NP V +IVKD +IG+G G HAE AL + Sbjct: 2 DDAQYMGLAIELAKRGAGYVNPNPMVGAVIVKDDRIIGQGYHEMFGGLHAERNALRHCTQ 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + I+E GI RVVV D + VSG+G++ L GI Sbjct: 62 SPAGATLYVTLEPCCHYGKTPPCTEAIVESGIARVVVGTLDCNPVVSGKGVRMLEDHGIR 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ E + + + ++ +K A++ D I S I+G S+ +VH Sbjct: 122 VDVGVLADECRHLIRVFSKYITTHTPYVIMKYAMTMDGKIATHTNQSRWISGEESRRRVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR A++VG+ TV+ DDP LTCR+ +P+R++ D + L S+I++TA Sbjct: 182 QLRRSVAAVMVGVNTVIEDDPLLTCRMAH--GRNPVRVVCDTRLRTPLTSRIVQTANDVR 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T DD A +R+ I+ D DL ++ L + S+L+EGG+A+ Sbjct: 240 TYIATACDDERKAEDYRRHGCEILAVGRKGDHVDLADVVRRLGDMQMDSVLLEGGSAMNW 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 S + R+VD +Y + + G G SP+ + V G D +E Sbjct: 300 SALEQRIVDEAHVYIAPKIFG-GTAKSPVGGQGVALPSDAVMLRPRACSRVGEDYLVESE 358 Query: 356 GKNLCLQE 363 C +E Sbjct: 359 VVYSCSRE 366 >gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC 700345] gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC 700345] Length = 373 Score = 352 bits (904), Expect = 4e-95, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 193/375 (51%), Gaps = 22/375 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL Sbjct: 2 WSIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L Sbjct: 62 AGSDAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +M E K +L R + +T+K+A S D ++ S ITG ++ Sbjct: 122 GIRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231 V LRA+ A++ G+ T+LADDP L R L + H P+R++LD +L Sbjct: 182 DVQRLRARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLG 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 + + K + +P+++V+ P A ++ DL LL++L Sbjct: 242 HELNLFK--IDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLLGE-SC 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343 S+LVE GA +A +F+N L D I+LY++ ++G G + + + Sbjct: 299 NSVLVEAGATLAGAFVNQGLADEIVLYQAMKILGSQGRNLLTLDDFQAMSEVPKINLIDE 358 Query: 344 DYFGSDVCLEYIGKN 358 G D L N Sbjct: 359 RKVGPDTRLTLRVSN 373 >gi|311068845|ref|YP_003973768.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus atrophaeus 1942] gi|310869362|gb|ADP32837.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus atrophaeus 1942] Length = 363 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 173/360 (48%), Gaps = 9/360 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ AL ++ G T +NP V ++VK+G ++G G G HAEV A++ AG+ Sbjct: 1 MEEYYMNTALELAKQGEGQTGSNPLVGAVVVKNGEIVGMGAHLKYGEAHAEVHAIKMAGK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + A YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+G+G+ + GI Sbjct: 61 HVKDADIYVTLEPCSHYGKTPPCAELIITSGIKRVFVAMRDPNPLVAGKGISMIKAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ + + +L ++TLK A S D + S IT ++ Sbjct: 121 VKEGILTDQAEKLNEKFLHYMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV AD+P LTCRL P+R+ILD + ++K+I Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPN-TVKQPVRVILDTSLTIPEEAKVILDQAAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D + I + + +L IL G+ S+ VEGGAAV SF Sbjct: 240 WIFTTSQADAEKKKRLSDFGVKIFTLENGHIHIPDVLKILAEEGIMSVYVEGGAAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 + II Y + +IG PS + + + G D+ LE K Sbjct: 300 VKEGCYQEIIFYIAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTAITHIGQDIKLEAKPK 359 >gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, [Edwardsiella ictaluri 93-146] gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella ictaluri 93-146] Length = 373 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 181/371 (48%), Gaps = 18/371 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M+ A +R T+ NP+V C++V+D ++G G G PHAEV AL Sbjct: 3 MSAVHSDEFYMARAFELARRGRFTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVLAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Sbjct: 63 RMAGEQARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQ 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + +M +E + +L R ++ LK+ S D MA S IT + Sbjct: 123 QAGIAVQHGLMLAEAEAINKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RAQS AIL TVLADDP LT R + L E P+R+I+D H Sbjct: 183 RADVQRYRAQSSAILSSSATVLADDPALTVRWDSLDEDTQRLYPREHLRQPLRVIVDSHN 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ ++ A ++ + D + + + DL L+ L + Sbjct: 243 RVTPQHGLV--AQPGETLLARIDPDTQDWPPSVSQLAVPRHGEGLDLVLLMMQLGKMQLN 300 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 S+ VE G +A + + + LVD +I+Y + +++G+ LE Sbjct: 301 SVWVEAGPRLAGALLQAGLVDELIVYLAPMLLGDAARGLCHLPGLERLGDAPALTFSDVT 360 Query: 345 YFGSDVCLEYI 355 G+D+ L Sbjct: 361 RVGNDLRLTLR 371 >gi|218463058|ref|ZP_03503149.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli Kim 5] Length = 412 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 185/410 (45%), Positives = 236/410 (57%), Gaps = 54/410 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARG T YVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGEAARGGTVYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGISMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG + Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++D IL GIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDTILGGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIVTEN------------------------------------------------ 251 A PVI+V Sbjct: 241 ARDVPVILVASEQVWPLSADAEGLPPSVLADYRGRATGLDPSFEPPTRGEMTGRAEGGTA 300 Query: 252 -----DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 D A + I+YC+ + LL L RG++SLLVEGGA A F+ + Sbjct: 301 PADATDLDSRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAG 360 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 LVD I LY++ +VIGEGGI SPL + F + FG D EY Sbjct: 361 LVDRIQLYQAPVVIGEGGIESPLARTDIPSGFAHMGTQIFGQDRLDEYER 410 >gi|304312168|ref|YP_003811766.1| Riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [gamma proteobacterium HdN1] gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [gamma proteobacterium HdN1] Length = 389 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 129/384 (33%), Positives = 194/384 (50%), Gaps = 27/384 (7%) Query: 1 MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57 MP ++FD + MS AL+ + + T NP V C+IV++G ++G G G HAEV Sbjct: 1 MPSYDFNAFDHQMMSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEV 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 ALE+AGE A+GATAYVTLEPC+HYGR+PPCA +I+ GI RVV + DP+ RVSG G Sbjct: 61 LALEQAGERAKGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYG 120 Query: 118 WLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI D +++ + + ++ R + +K +SQD MA S IT Sbjct: 121 LLRAAGIKTDNGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRII 223 ++ V LRA+S+A++ G+ TVL+DDP LT R P+R+I Sbjct: 181 SPARADVQRLRARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVI 240 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLL 279 LD + +++++ + +P A R I R DL +L Sbjct: 241 LDSQLRTPTSARLLREPGQN--VFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVL 298 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LE 335 L + V +L+E GA+VA SFI + LVD ++Y++ ++G P+ + EG + Sbjct: 299 QWLAAQEVNEVLIEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEGLSGMKDK 358 Query: 336 KNFMCVRRDYFGSDVCLEYIGKNL 359 + V G D Y ++L Sbjct: 359 RTLDLVDSRQIGLDHRFTYRLRSL 382 >gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591] gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591] Length = 370 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 180/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG++ Sbjct: 6 DEFYMARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMAGDK 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 66 AHGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + +L R ++ LK+ S D MA S IT S+ V Sbjct: 126 HHGVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RAQS AIL TVLADDP LT R + L E P+R+I+D +++ Sbjct: 186 FRAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQH 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++ + D ++ ++ DL L+ L R + ++ VE Sbjct: 246 CLVNQPGQ--TWLARARQDDQSWPDGVEQLEMPLHGGGIDLVGLMMTLGKRQINTVWVEA 303 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G +A + + + +VD +I+Y + ++G+ LE+ F G DV Sbjct: 304 GPRLAGALLQAGVVDELIVYLAPKLLGDAARSLCVLPGLEQLSQAPMFDMTDVCQIGPDV 363 Query: 351 CLEYIGK 357 L + Sbjct: 364 RLTLKPR 370 >gi|168210245|ref|ZP_02635870.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B str. ATCC 3626] gi|170711633|gb|EDT23815.1| riboflavin biosynthesis protein RibD [Clostridium perfringens B str. ATCC 3626] Length = 365 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 186/361 (51%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ ++ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINSINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ ++RVVV DP+ VSG+ ++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCVEAIIKNKLKRVVVGTLDPNPLVSGKSIKILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQSE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + K I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDKGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + +F+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|255655719|ref|ZP_05401128.1| riboflavin biosynthesis protein [Clostridium difficile QCD-23m63] gi|296451726|ref|ZP_06893457.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08] gi|296878970|ref|ZP_06902968.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07] gi|296259427|gb|EFH06291.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP08] gi|296429997|gb|EFH15846.1| riboflavin biosynthesis protein RibD [Clostridium difficile NAP07] Length = 370 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 174/362 (48%), Gaps = 11/362 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ Sbjct: 5 NQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDDYIIGKGYHEKFGSNHAEVNAIN 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L Sbjct: 65 SAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLRD 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + +E E + + KR +K AVS D I S I+ S+ Sbjct: 125 NNIDVTVGTLEEEARDLNEVFFYYIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K Sbjct: 185 YLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD- 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ T + ++ N+ I + DL+ ++ L + S+LVEGGA Sbjct: 244 KTSKTIVFTCCKESKKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGA 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + S +RLVD + L+ S +IG P+ + + D+ Sbjct: 304 TLNDSLFRNRLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLAINNVTLIDGDIL 363 Query: 352 LE 353 +E Sbjct: 364 IE 365 >gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinomonas sp. MED121] gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinomonas sp. MED121] Length = 383 Score = 352 bits (903), Expect = 5e-95, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 185/361 (51%), Gaps = 16/361 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ A++ +R + T NP V C++V+D ++ G G HAEV A+ A + Sbjct: 10 EYWMAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVNAIANANGDT 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G TAYVTLEPCSH G++ PCA+ +I+ + R+V + DP+ V+GRGL L + GI V Sbjct: 70 QGCTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEVI 129 Query: 128 R-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +ME+E ++ R E ++ LK+A+S D M S ITG ++ V L Sbjct: 130 GPVMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGPDARLDVQKL 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKT 239 RAQSDAI+ GIG+V+ADDP +T R++ P RII+D + +SKI+ Sbjct: 190 RAQSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSIPPESKILYP 249 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEG 294 + + E + A K +N+ Y DL + L +G+ +LVE Sbjct: 250 CNQVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQGINEVLVET 309 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA +A +F+ LVD ++LY + ++G P PL+ +F V G D+ Sbjct: 310 GAVLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVNLSQLGKDIK 369 Query: 352 L 352 L Sbjct: 370 L 370 >gi|261876153|ref|YP_695000.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC 13124] gi|255529887|gb|ABG83871.2| riboflavin biosynthesis protein RibD [Clostridium perfringens ATCC 13124] Length = 371 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 184/362 (50%), Gaps = 13/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + Sbjct: 6 NLDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSI 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + GI Sbjct: 66 KSTEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + E R I LK A++ D I S IT S+ V Sbjct: 126 EVKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 186 HSLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQN 245 Query: 242 LAPVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + +I T N D + + I +I + ++ ++L L + + S+L+EGG Sbjct: 246 ESKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGG 305 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + +F+ ++ V+ I + + V G +P+E + F V F D+ Sbjct: 306 NLNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDIL 365 Query: 352 LE 353 +E Sbjct: 366 IE 367 >gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 367 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 123/363 (33%), Positives = 179/363 (49%), Gaps = 18/363 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+ Sbjct: 3 DEMYMARAMKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPC + +I G+ RVV + DP+ +V GRGL L Q+GI + Sbjct: 63 ARGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGIDV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQDAENINKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP +T R L P+RII+D +++ + Sbjct: 183 LRAQSHAILTSSETVLADDPAMTVRWEELNADTQALYPQENLRQPLRIIVDSQNRVTPEH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +I++ I +D + + + DL L+ +L + V S+ VE Sbjct: 243 RIVQQPGE--TWIARTKEDTREWPEGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDV 350 G +A + + + LVD ++Y + ++G + G G DV Sbjct: 301 GPMLAGALLQAGLVDEFLVYVAPKLLGNDARGLFVLPGLEKLADAPQLSFSEIRPVGPDV 360 Query: 351 CLE 353 CL Sbjct: 361 CLH 363 >gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147] gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147] Length = 359 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 124/363 (34%), Positives = 187/363 (51%), Gaps = 14/363 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D + M AL + TS NP V C+I ++G+G G PHAEV AL Sbjct: 3 PFTHQDTQHMQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALA 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Q Sbjct: 63 QAGALARGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQ 122 Query: 122 KGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G + E+E + +L+R +R + LKIA S D +A S ITG ++ Sbjct: 123 AGTQTASGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V + RA+S A+L GIGT+LAD+P+L R+ + P+RI+LD + S+II+ Sbjct: 183 ADVQIQRAESCAVLTGIGTILADNPQLNVRIPTI--RQPLRIVLDRQLRTPARSRIIQDG 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVA 299 +I T++ A N++I DL LL L + L+VE G+ +A Sbjct: 241 GE--TLICTQSPANPFADY---PNVHIYRQPENDLSSLLAHLAREHQIGELMVEAGSTLA 295 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +FI + L D I+ Y++ ++G+ +P + V + G D+ Sbjct: 296 TAFIQADLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDIKWVL 355 Query: 355 IGK 357 K Sbjct: 356 QRK 358 >gi|304440657|ref|ZP_07400541.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370844|gb|EFM24466.1| riboflavin biosynthesis protein RibD [Peptoniphilus duerdenii ATCC BAA-1640] Length = 368 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 184/362 (50%), Gaps = 15/362 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D FMS A+ ++ +G T TNP V C+IV++ +IG G G HAEV A+ +A Sbjct: 5 DDRYFMSRAIELAKNGIGATKTNPLVGCVIVRNEKIIGEGYHKVFGSCHAEVNAINDAKA 64 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GE GAT YV LEPCSHYG++PPCA IIE I RVV+ DP +VSGRG++ L Sbjct: 65 KGENLDGATLYVNLEPCSHYGKTPPCADRIIEERITRVVIGNCDPFEKVSGRGIERLKNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ E + Y T R + LK ++ D I S IT S+ Sbjct: 125 GIEVEVGVLKEECEKLNERYFTYIKNNRPFVVLKSGMTIDGKIATKTYESQWITSEESRK 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR D I+VGI TVL DDP L R G HSP RII+D ++ +K++ L Sbjct: 185 FSHELRGMCDGIMVGINTVLKDDPTLNVR-AGRYPHSPARIIVDSKLRIFPSAKVLSKDL 243 Query: 242 LAPVIIVTEN--DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 II T D + + +N+N++ + DL+ L+ L ++S+L+EGG Sbjct: 244 ENIAIIATTENCDKEKFEILSKMENVNVVIVKEKDKMVDLRDLMEKLKTFNISSILLEGG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 ++ S + +LVD + + +IG G+ + +E+ + V +D+ Sbjct: 304 GSLNASMLREKLVDKFYFFIAPKIIGSDGVSAIGSMGIEKLDEAIDIKDVEVIKIATDIF 363 Query: 352 LE 353 ++ Sbjct: 364 IK 365 >gi|126699306|ref|YP_001088203.1| riboflavin biosynthesis protein [Clostridium difficile 630] gi|255100831|ref|ZP_05329808.1| riboflavin biosynthesis protein [Clostridium difficile QCD-63q42] gi|255306720|ref|ZP_05350891.1| riboflavin biosynthesis protein [Clostridium difficile ATCC 43255] gi|115250743|emb|CAJ68567.1| Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Clostridium difficile] Length = 370 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 177/362 (48%), Gaps = 11/362 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 D +M A+ ++ G + NP V C+IVKD +IG+G G HAEV A+ Sbjct: 5 NQKEKDIYYMKKAIELAKNGEGFVNPNPLVGCVIVKDSNIIGKGYHEKFGSNHAEVNAIN 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A + + +T YV LEPCSHYG++PPC II+ I+RVV+ DP+ V G G++ L Sbjct: 65 SAKQSLKDSTLYVNLEPCSHYGKTPPCVDKIIQNKIKRVVISTLDPNPLVCGNGVKKLKD 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++E E + A+ KR +K AVS D I S I+ S+ Sbjct: 125 NNIDVTVGILEDEARDLNEAFFYHIKNKRPLCIVKSAVSLDGKIATKSLESKWISNESSR 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R + +I+VGI TVL D+P LTCRLN + P RI++D H KL L+S ++K Sbjct: 185 YLTHKYRNKYQSIMVGINTVLNDNPLLTCRLNQEKVSHPTRIVIDTHLKLPLNSNLVKD- 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 + I+ T + + ++ N+ I + DL+ ++ L + S+LVEGGA Sbjct: 244 KTSKTIVFTCCKESIKLSMLKENNVETIISPSKNNLVDLEFVMYKLGELNIDSVLVEGGA 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVC 351 + S ++LVD + L+ S +IG P+ + + D+ Sbjct: 304 TLNDSLFRNKLVDKVKLFLSPKIIGGKDAPTFVSGEGINHLSDSTQLTINNVTLIDGDIL 363 Query: 352 LE 353 +E Sbjct: 364 IE 365 >gi|170756114|ref|YP_001782503.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str. Okra] gi|169121326|gb|ACA45162.1| riboflavin biosynthesis protein RibD [Clostridium botulinum B1 str. Okra] Length = 365 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 189/358 (52%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 M AL+ + G + NP V ++VK+ +IG G Y G PHAEV AL EAGE+A+ Sbjct: 6 FHMEKALKLAERGEGKVNPNPKVGAIVVKNNKIIGEGYHKYFGGPHAEVYALREAGEKAK 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCSHYG++PPCA+ I++ GI + ++ + DP+ V GRG+ L Q GI +V Sbjct: 66 GATIYVTLEPCSHYGKTPPCAESIVKMGISKAIIAMKDPNPLVEGRGIDILKQNGIEVVT 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME E K ++ +K+ + LK A + D I S ITG ++ +V +R Sbjct: 126 GIMEKESKKLNEVFIKYITKKKPFVVLKTASTLDGKIATRTGESKWITGEEARYKVQQIR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 I+VGI TV+ D+P LT R+ G SP II+D + ++ L+SKI++T + I Sbjct: 186 NDLSGIMVGIDTVIKDNPLLTTRIEG--GRSPKAIIVDSNLRIPLESKILETFNKRAIYI 243 Query: 248 VTEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAH 300 +P A ++ + + L +L+ LV GV S+L+EGG+ + Sbjct: 244 AATKKHKNPSKKNALENLGAKVLEFEENEEGKVPLNELMQYLVSEGVDSILLEGGSTLNF 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 S + +VD ++ + + ++G + + +E ++ + G D+ +E Sbjct: 304 SALKEGIVDKVMCFIAPKIMGGQDSKNMIGGNGVESLKDIFKLENLKFEKIGQDILIE 361 >gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212] gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212] Length = 366 Score = 352 bits (903), Expect = 6e-95, Method: Composition-based stats. Identities = 124/360 (34%), Positives = 190/360 (52%), Gaps = 13/360 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D FMS ALR + + T+ NP V C++ D +IG G G PHAE+ AL Sbjct: 2 FSSVDYAFMSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINALAS 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E A GATAY+TLEPCSHYGR+PPC +I+ GI +V++ ++DP+ VSGRG L Q Sbjct: 62 TSEAACGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ + + ++ R + K+ I LK A S D + S ITG ++ Sbjct: 122 GITVQTGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQ 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S AI+ GIGTV +D+P+L+ R P +II+D H + L++K++++ Sbjct: 182 DGHRWRARSCAIMTGIGTVKSDNPQLSVRHAE-TARQPKKIIVDSHLNIPLNAKLLQSDG 240 Query: 242 LAPVIIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 V+I T +D+ V A + +I DLKK++T+L + +LVE G Sbjct: 241 E--VLIFTAHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGR 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDYFGSDVCL 352 + + I + LVD +I Y + ++G+ I P L +K G D+ + Sbjct: 299 ELNGALIEAGLVDEMIFYLAPHLLGDDARGMIKLPELTCLEQKKELKIQDVRMIGQDIRI 358 >gi|329122085|ref|ZP_08250693.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM 19965] gi|327466892|gb|EGF12408.1| riboflavin biosynthesis protein RibD [Dialister micraerophilus DSM 19965] Length = 378 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 185/371 (49%), Gaps = 23/371 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++MS AL ++ T TNP V ++VK+G V+G G G HAEV A + Sbjct: 4 NEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVVGEGWHKKYGDVHAEVNAFKNCK 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L + GI Sbjct: 64 ENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E+E ++ E + + K A+S D I S I+ S+N V Sbjct: 124 QVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKISCYTGDSKWISSETSRNDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232 H LR + AI+VG GT+ D+P LT R + + +P+RII+D + Sbjct: 184 HYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPI 243 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGV 287 DSK+ + V++ T D F+ K I +IY + DL K L IL +G+ Sbjct: 244 DSKVFQDGGK-TVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGI 302 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVR 342 S+L+EGGA A N ++VD + +Y + I+IG PS + + K + Sbjct: 303 NSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGSGVSKISDAIKLKNIS 362 Query: 343 RDYFGSDVCLE 353 + D E Sbjct: 363 INNLNEDTIFE 373 >gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola agarilytica 4H-3-7+YE-5] Length = 372 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 189/366 (51%), Gaps = 18/366 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 S+ DA+ M+ A+R + TS NP+V C++ G ++G+G G PHAE+ A+ Sbjct: 4 FSALDAKMMALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIA 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE +GATAYVTLEPC+H+GR+ PC++ +I+ G+ RVV + DP+ V+G GLQ LS Sbjct: 64 QAGERTKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSD 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++E E K ++ R +T+K+A S D + S ITG +++ Sbjct: 124 AGVAVSSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKL 230 V RA+S AIL G GTVLAD+P L R + L P RI+LD ++ Sbjct: 184 EDVQRHRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGRNQM 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 D + +L +P++I+ + A ++ + DL ++ L RG + Sbjct: 244 RPDLHLF--SLSSPIVIINSQPNTADFPAHVEQYQALSNGAQLDLHDVMKHLGQRGFNQI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346 VE GA +A + + ++L+D +ILY++ ++G+ G L + Sbjct: 302 WVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQV 361 Query: 347 GSDVCL 352 G D+ L Sbjct: 362 GPDLKL 367 >gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis alpha710] gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579] gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NZ-05/33] Length = 369 Score = 351 bits (902), Expect = 7e-95, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 190/366 (51%), Gaps = 11/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P +M V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360 Query: 353 EYIGKN 358 + + Sbjct: 361 VFRKND 366 >gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911] gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911] Length = 371 Score = 351 bits (902), Expect = 8e-95, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 178/359 (49%), Gaps = 9/359 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R +G TS NP V ++VKDG + G G G HAEV A+ A Sbjct: 3 DEDYMDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGA YVTLEPCSH+G++PPCA IIE GI+RVV+ DP+ V+GRG+ L GI + Sbjct: 63 ARGAEIYVTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + A+ R ++T+K A S D S IT S+ VH Sbjct: 123 EVGIRREEAEEINSAFFHFMRTSRPYVTIKAAASFDGKTAANTGDSQWITSPESREDVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAIL G+ TV+ D+P+LT RL +P+R+ILD ++ D+ I+ + Sbjct: 183 LRHEHDAILTGVNTVIHDNPQLTARLP-RGGKNPIRVILDSTLRIPGDAAILHDQKAPVI 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFI 303 I N D A + +++ ++ +L L R + S+ VEGG+ + SFI Sbjct: 242 IFTGSNYDNSKAEQIKALGTELVHFPEEEVPAGKVLEELGTRQILSVFVEGGSEIHASFI 301 Query: 304 NSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGK 357 L IILY + +IG +P EG + + G D+ + + + Sbjct: 302 KEGLFQQIILYAAPKIIGGRKAVPFIGGEGISSMDQSTPLAFKSAERIGPDLKIIAVPQ 360 >gi|145298017|ref|YP_001140858.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp. salmonicida A449] gi|142850789|gb|ABO89110.1| pyrimidine deaminase/reductase RibD [Aeromonas salmonicida subsp. salmonicida A449] Length = 369 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 189/367 (51%), Gaps = 21/367 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D ++M+ AL +R T+ NP V ++VK G+V+G G G PHAE+ AL E Sbjct: 2 FSQDDYQWMNRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEIYALHE 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+EARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V GRGL+ LS+ Sbjct: 62 AGDEARGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPEVGGRGLRMLSEA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI D ++ SE + + R +T+K+ S D MA S ITG +++ Sbjct: 122 GIKTDFGLLSSEAEALNPGFFKRMRTAFPLVTVKLGASLDGRTAMASGESQWITGPLARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V LRA DA+L TVLAD LT R + L P+R+I+D +L Sbjct: 182 DVQRLRAGHDAVLSSAETVLADGASLTVRWDELPPSLKATYAKETLRQPLRVIVDSRNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + D + + PV++ ++ + ++ DL L +L R + S+ Sbjct: 242 TPDLPLFQ--STGPVLLARHKAAGDWPEWVQQLELPLLD-GKLDLVSLFMLLAKRNINSV 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDY 345 LVE G + + ++ LVD ++LY++ ++G+ G +P+ L + Sbjct: 299 LVEAGPRLCGALLDKGLVDELVLYQAPKLMGDEGRGLFHLPA-LTRLFQAPKLCIKDVRL 357 Query: 346 FGSDVCL 352 G D+ + Sbjct: 358 VGQDIRI 364 >gi|168216370|ref|ZP_02641995.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC 8239] gi|182381291|gb|EDT78770.1| riboflavin biosynthesis protein RibD [Clostridium perfringens NCTC 8239] Length = 365 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 183/361 (50%), Gaps = 13/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AL +R G + NP V +IVK G +IG+G + G HAE+ A+ + + Sbjct: 1 MDEFFMKKALELARKGEGYVNPNPLVGAVIVKGGEIIGQGYHEFFGGNHAEINAINSSIK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG++PPC + II+ +RVVV D + VSG+ ++ L + GI Sbjct: 61 STEGATIYVTLEPCCHYGKTPPCIEAIIKNKFKRVVVGTLDQNPLVSGKSIKILRESGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + E R I LK A++ D I S IT S+ VH Sbjct: 121 VKVGVLEKECIRLNEIFNFYIKENRPFIALKWAMTLDGKIATKEFKSKWITNRKSREFVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALL 242 LR + +I+VGI TVL D+P+L CRLN + E RI+LD ++ LDS+I+K Sbjct: 181 SLRNKYSSIMVGINTVLKDNPDLRCRLNKNKELERKHFRIVLDSKLRIPLDSEILKNQNE 240 Query: 243 APVIIVTEN-DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 + +I T N D + + I +I + ++ ++L L + + S+L+EGG Sbjct: 241 SKTLIFTTNKKDKIKNEKLKDIGIEVIEVNLDEGKININQVLECLKEKNIDSVLIEGGGN 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 + +F+ ++ V+ I + + V G +P+E + F V F D+ + Sbjct: 301 LNFTFLENKKVNKIYAFVAPKVFGGKNAITPVEGEGIRNVLDAFEFPEVNLKNFDKDILI 360 Query: 353 E 353 E Sbjct: 361 E 361 >gi|154686573|ref|YP_001421734.1| hypothetical protein RBAM_021420 [Bacillus amyloliquefaciens FZB42] gi|154352424|gb|ABS74503.1| RibD [Bacillus amyloliquefaciens FZB42] Length = 371 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 9/361 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M+ A+ +R G T +NP V ++VK+G ++G G G HAEV A+ AG Sbjct: 1 MEEYYMNTAIELARRGEGQTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMAGR 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GA YVTLEPCSHYG++PPCA+ II+ GI+RV + V DP+ V+G+G+ L GI Sbjct: 61 HAKGADLYVTLEPCSHYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ + + +L ++TLK A S D S IT ++ Sbjct: 121 VKTGLLRQQAEELNKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG GTV AD+P LTCRL P+R+ILD + + ++ Sbjct: 181 QYRKSHQSILVGAGTVKADNPSLTCRLPDA-VKQPVRVILDTKLTIPETANVLTDGAAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I + D I +I D + ++L+IL G+ S+ VEGGA+V SF Sbjct: 240 WIFTAKGADVQKKDRLTALGIKVIPLETDRIHVPEVLSILAENGIMSVYVEGGASVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 + + Y + +IG PS + + + + G D+ L I K Sbjct: 300 VKEDCFQELHFYFAPKLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTAIPK 359 Query: 358 N 358 + Sbjct: 360 D 360 >gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis TAC125] gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis TAC125] Length = 382 Score = 351 bits (901), Expect = 9e-95, Method: Composition-based stats. Identities = 115/372 (30%), Positives = 187/372 (50%), Gaps = 18/372 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + +D +M+ A+ ++ T+ NP+V C++VK+ ++G G G HAEV AL Sbjct: 7 FNQYDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNALAM 66 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS Sbjct: 67 AGSKAKGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDA 126 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + + R ++T K+A S D + S ITG ++ Sbjct: 127 GIEVAYGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQ 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V L RAQS AIL G TVL DD +L R N L + P+R+I+D +L+ + Sbjct: 187 DVQLYRAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPN 246 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 + A+ + +II T D K+I + + + DL +L L ++ + Sbjct: 247 LALF--AIESEIIIFTTKVDKSQHWPHFVKHIVVTASNSKVDLTAVLKKLAKLQFNTVWL 304 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFG 347 E GA +A + L+D I Y + +IG G S + L + G Sbjct: 305 EAGATLAGKMVELDLIDEFIFYLAPKLIGCDG-KSLVNFPELISMQNTIDLTFNECTRIG 363 Query: 348 SDVCLEYIGKNL 359 D+ + + +L Sbjct: 364 DDLRISAVKSSL 375 >gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis HAW-EB4] gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis HAW-EB4] Length = 373 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 130/375 (34%), Positives = 197/375 (52%), Gaps = 22/375 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D++ MS A+ ++ + T NPSV +IVKDG ++G G G PHAEV AL Sbjct: 2 WSIEDSQMMSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV+ V DP+ VSGRG+ L Sbjct: 62 AGADAKGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +M E K +L R + +T+K+A S D ++ S ITG +++ Sbjct: 122 GIRVDVGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARS 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----------LNGLQEHSPMRIILDPHFKLS 231 V LRA+ A++ G+ T+LADDP L R L + H P+R++LD +L Sbjct: 182 DVQRLRARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLG 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGV 287 + + +A +P+++V+ P A ++ DL+ LL++L + Sbjct: 242 TELNLFNSA--SPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLLG-KSC 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343 ++LVE GA +A +F+N LVD I+LY++ ++G G + + + Sbjct: 299 NTVLVEAGATLAGAFVNQGLVDEIVLYQAMKILGGQGRNLLALDDFQAMSDIPRINLIDE 358 Query: 344 DYFGSDVCLEYIGKN 358 G D L N Sbjct: 359 RKVGKDTRLTLRVSN 373 >gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. maculicola str. ES4326] Length = 381 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 188/364 (51%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 8 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQ 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +++ G+ RVV + DP+ VSGRGL L Sbjct: 68 AGELARGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R R ++ +K+A+S D MA S ITG +++ Sbjct: 128 GIGVQCGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARS 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----------SPMRIILDPHFKLS 231 V LRAQS +L G TVLAD+ LT R + L + P+R+++D ++ Sbjct: 188 AVQRLRAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVP 247 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL+KL+ L RGV Sbjct: 248 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELANRGVN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD ++ + +G P PL + V Sbjct: 305 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELQIVEMRA 364 Query: 346 FGSD 349 G+D Sbjct: 365 VGND 368 >gi|319408448|emb|CBI82103.1| Riboflavin biosynthesis protein ribD [Bartonella schoenbuchensis R1] Length = 375 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 157/375 (41%), Positives = 226/375 (60%), Gaps = 12/375 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAE 56 M + D RFM+AA+R ++ H+GLT NPSV LIV+D ++G GVTA G PHAE Sbjct: 2 MNKEAQDNRFMAAAIRLAQRHIGLTGQNPSVGALIVRDDDGKASIVGYGVTAIHGRPHAE 61 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL AG + GATAYVTLEPCSHYG + PC +I+ GI RVV+ + DPD RV GRG+ Sbjct: 62 VQALLMAGPLSHGATAYVTLEPCSHYGETSPCVNALIDSGISRVVIALTDPDKRVCGRGI 121 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI +V+ ++ E L AYL + +R +TLK+A+S DN IG+ G V I+ Sbjct: 122 ALLRAAGIEVVEGVLAREAFETLSAYLCIKKLQRCEVTLKMAISADNGIGIKKKGRVEIS 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G + H+LRAQ+DAI+VGIGT+LAD+P+L+CRL GL+ SP+RIILD + ++ D+K Sbjct: 182 GAQAHTYTHILRAQNDAIMVGIGTILADNPQLSCRLPGLEMRSPVRIILDANLRIPFDAK 241 Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTS 289 +I+TA P ++ + +A + + I + +L +L RG+ S Sbjct: 242 VIQTATKIPTWVICNATFAEKSKKIALEQCGVCIFPIEMSAHLMQPFAILQLLCQRGINS 301 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+N+ VD +I + + +++G I +P YL + F + G+D Sbjct: 302 ILLEGGAKTGEIFLNAGCVDQLICFHAPVILGADRIDAPHFATYLSE-FNEIETKMLGND 360 Query: 350 VCLEYIGKNLCLQEL 364 ++ K LCLQ L Sbjct: 361 RLCKWRRKTLCLQGL 375 >gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea sp. MED297] gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297] Length = 366 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 200/369 (54%), Gaps = 14/369 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++S DA +M+ AL+ + T+ NP+V C+IV+DG ++G G G PHAEV AL Sbjct: 3 MSMTSHDA-WMAQALKLAARGRRTTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG +ARGATAYVTLEPCSHYG++PPCA +I+ G+ VV + DP+ +V+G+GL+ L Sbjct: 62 AEAGSKARGATAYVTLEPCSHYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLR 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ ++ +E + +L R R + K+A S D +A S ITG + Sbjct: 122 NAGIEVISGVLNAEAERLNRGFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V RA S A++ G+ TV+AD+P L RL+G + P+RIILD + + S I+ T Sbjct: 182 RQDVQSGRADSCAVVTGVETVVADNPSLNVRLDGA-DRQPVRIILDTQARTPVPSTIV-T 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 VII +P+ + ++ D DL L+ + + +E G Sbjct: 240 LPGRTVIIHGAQANPLSLERLQAAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A + +F L+D + LY++ I++G G P+ + L+ R D DV ++ Sbjct: 300 ATLTGAFAEQGLLDELWLYQAPIMLG--GATRPVADFRLDSLKQAHRFDV--DDV--RFV 353 Query: 356 GKNLCLQEL 364 GK++ Q L Sbjct: 354 GKDIRWQLL 362 >gi|167630209|ref|YP_001680708.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum Ice1] gi|167592949|gb|ABZ84697.1| riboflavin biosynthesis protein ribd [Heliobacterium modesticaldum Ice1] Length = 374 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 140/369 (37%), Positives = 190/369 (51%), Gaps = 12/369 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM AL + +G TS NP V ++VKDG VIG G G PHAEV AL + Sbjct: 1 MIPEDFSFMDRALELAALALGRTSPNPVVGAVVVKDGRVIGEGYHRKAGTPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A G T YVTLEPC+H+GR+PPC + II I RVV V DP+ +V+G+G L + Sbjct: 61 AGEAACGGTLYVTLEPCNHHGRTPPCTEAIIAAKISRVVAAVADPNPQVAGQGFARLREA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD +M + T KR + LK A++ D I A S ++ S+ Sbjct: 121 GIEVDVGVMADAAITINQPFFTWVTRKRPWVLLKWAMTADGKIATASGDSRWVSSPASRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH R + DAILVGIGTVLADDP+LT RL +P+RII+D + L +K++ A Sbjct: 181 KVHQWRNRLDAILVGIGTVLADDPQLTVRLAEKDCRNPIRIIVDSKARTPLTAKVLS-AE 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGA 296 +I VTE A + ++ C C DL LL L VTSLLVEGGA Sbjct: 240 AKTIIAVTEAAPAEQVAALEQAGATVLRCPADAGGCVDLSYLLHRLACDNVTSLLVEGGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVC 351 + +F++ L D ++ + ++G G PSP+ R G D Sbjct: 300 RIHGAFLDGNLADRAAIFLAPKIVGGEGAPSPVGGTGAALMAKARRLQRCVMTSVGDDWL 359 Query: 352 LEYIGKNLC 360 LE + + + Sbjct: 360 LEGVLQEVR 368 >gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense DSM 12261] gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense DSM 12261] Length = 369 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 192/368 (52%), Gaps = 15/368 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ +R G TS NP V C+IVK+ ++ G G PHAEV+AL+ AG+ Sbjct: 8 DDEYYMRRAISLARRGTGQTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRAGD 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 A+GAT YV LEPC+H+G++PPCA + + RVV+ + DP+ V+G+G++ L I Sbjct: 68 GAKGATVYVNLEPCAHFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLI 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E K ++ R ++R TLK A + D I + S IT S+N+ H Sbjct: 128 TETGVLEDECKWVNRGFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LLRA+ D I+VG+GTVL DDP LT R SP+RI++D + D+ I++ Sbjct: 188 LLRAEHDGIMVGVGTVLRDDPSLTVR--HTVGRSPIRIVVDTMLRTPADAAILRGDGA-- 243 Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I+ + K I Y + DL+ IL RG+ S+LVEGGA +A Sbjct: 244 IILAGISAQKMGKHDQLSKAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATLA 303 Query: 300 HSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +FI +L+D + L+ + ++G+G + F + G D+ +E + Sbjct: 304 SAFIQEKLIDGLSLFIAPTIMGQGISLFKEIVVPSLDKLIRFRVLNMSRTGRDIWIEGVP 363 Query: 357 KNLCLQEL 364 + C +L Sbjct: 364 E--CSPDL 369 >gi|114771641|ref|ZP_01449045.1| riboflavin biosynthesis protein RibD [alpha proteobacterium HTCC2255] gi|114547713|gb|EAU50603.1| riboflavin biosynthesis protein RibD [alpha proteobacterium HTCC2255] Length = 365 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 134/363 (36%), Positives = 195/363 (53%), Gaps = 11/363 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D R+M AL G T NP V C+IVK+ +VIGRG T GG PHAE AL Sbjct: 1 MINKNTDERWMRLALSLGARGAGRTWPNPFVGCVIVKNSLVIGRGYTQQGGRPHAETVAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 ++A +A +T YVTLEPC+H G++PPC +I+ GI+RVV+ DPD RVSG+G+Q L Sbjct: 61 QQASNDAENSTVYVTLEPCAHTGKTPPCVNNLIKAGIKRVVIAAIDPDHRVSGKGIQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +++ E + + + +KR ++LKIA S D I S +TG S Sbjct: 121 NAGIEVSVGILKEEAEKAHAGFFSILNKKRPFLSLKIATSIDGRIATQTGNSKWLTGAES 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA DA+LVG GTV AD+P L R G + P+RI++D + K+ S +I + Sbjct: 181 RQFVHYLRATHDAVLVGRGTVEADNPSLNVRGFGRAVNQPVRIVMDSNLKIDTKSNLINS 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 A P+ I + L+ K I C DL+ + L G+T +L EGG Sbjct: 241 AKEIPLWICHAKESEFSKLS--KTGAMSIACKHKNGGIDLQDAMENLAKNGLTRILCEGG 298 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 +A S +N LVD +I+ ++ +VIG+ G + ++ NF + G+DV Sbjct: 299 GKLAASLLNENLVDELIVMQAGLVIGKEGTAAVSGLGIDALVDAPNFDMLETKRIGNDVL 358 Query: 352 LEY 354 + Sbjct: 359 SIW 361 >gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617] Length = 367 Score = 351 bits (900), Expect = 1e-94, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 185/366 (50%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEY 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I A + + D + I +Y + DL LL +L + + S+ VE Sbjct: 243 RLI--AQPGETWLARSSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA A + + + +VD +I+Y + ++G+ G LE F G D+ Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360 Query: 351 CLEYIG 356 L Sbjct: 361 RLTLTP 366 >gi|313891665|ref|ZP_07825272.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus UPII 345-E] gi|313119943|gb|EFR43128.1| riboflavin biosynthesis protein RibD [Dialister microaerophilus UPII 345-E] Length = 378 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 184/371 (49%), Gaps = 23/371 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++MS AL ++ T TNP V ++VK+G VIG G G HAEV A + Sbjct: 4 NEDEKWMSHALDLAKHGYWYTETNPLVGAVLVKNGKVIGEGWHKKYGDVHAEVNAFKNCK 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E AT YVTLEPC HYG++PPC +++ ++RVV+ + DP+ VSG+ ++ L + GI Sbjct: 64 ENTEHATLYVTLEPCCHYGKTPPCLNLVLQKKVKRVVIAMKDPNPLVSGKSIKILKENGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E+E ++ E + + K A+S D S I+ S+N V Sbjct: 124 QVIVGVLENEAVKLNEIFIKYITEHKPFVLYKAAMSIDGKTSCYTGDSKWISSETSRNDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSL 232 H LR + AI+VG GT+ D+P LT R + + +P+RII+D + Sbjct: 184 HYLRNKYKAIMVGAGTIKKDNPSLTSRFYIINKKNGEKELMKNQRNPIRIIVDGKLSSPI 243 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGV 287 DSK+ + V++ T D F+ K I +IY + DL K L IL +G+ Sbjct: 244 DSKVFQDGGK-TVVLTTSYADKKNVEKFKNKGIELIYSNLGNDGKVDLNKSLEILARKGI 302 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVR 342 S+L+EGGA A N ++VD + +Y + I+IG PS + + K + Sbjct: 303 NSILLEGGAETAAEAFNQKIVDKLRIYIAPIIIGGKTSPSIIGGFGVSKISDAIKLKNIS 362 Query: 343 RDYFGSDVCLE 353 + D E Sbjct: 363 INNLNEDTIFE 373 >gi|296332262|ref|ZP_06874724.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305674964|ref|YP_003866636.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii str. W23] gi|296150576|gb|EFG91463.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413208|gb|ADM38327.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bacillus subtilis subsp. spizizenii str. W23] Length = 361 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 174/355 (49%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 1 MEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 61 HAKGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMIEKAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ + + +L ++TLK A S D + S IT ++ Sbjct: 121 VKEGILADQAEKLNEKFLHFMRTGLPYVTLKAAASLDGKTATSTGDSKWITSEAARQDAQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R +ILVG+GTV+AD+P LTCRL + P+R+ILD + D+++I Sbjct: 181 QYRKTHQSILVGVGTVIADNPSLTCRLPDVT-KQPVRVILDTALSIPEDTQVICDQAAPT 239 Query: 245 VIIVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D +NI + + + +L IL GV S+ VEGG+AV SF Sbjct: 240 WIFTTARADEEKKKRLSAFGVNIFTLETERIQVPDVLKILAEEGVMSVYVEGGSAVHGSF 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 + II Y + +IG PS + + G D+ L Sbjct: 300 VKEGCFQEIIFYFAPKLIGGTHSPSLISGEGFQSMKDVPLLQFTDITQIGRDIKL 354 >gi|328948002|ref|YP_004365339.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM 2489] gi|328448326|gb|AEB14042.1| riboflavin biosynthesis protein RibD [Treponema succinifaciens DSM 2489] Length = 390 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 186/374 (49%), Gaps = 21/374 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--- 66 FM A+ ++ G NP V +I KDG +I G G HAE AL+ A E+ Sbjct: 18 FMQRAIELAKRGGGKVHPNPLVGAVIEKDGKIIAEGFHHEYGNLHAERDALKNAAEKNAC 77 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGA YVTLEPC H G+ PPC Q II+ GI+ VV+ DP+ V+G+G+ L GI I Sbjct: 78 VRGANLYVTLEPCCHTGKQPPCTQAIIDAGIKNVVIGSRDPNSLVNGKGVAQLENAGIKI 137 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 M++E + KR + +K A S D ++ S IT S+ VH Sbjct: 138 FRDFMKAECDSLNEIFFYYITAKRPFVIVKYAQSADGKTSLSSGESKWITNESSREYVHY 197 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + A++ GI TVL DDP LTCR+ G + + P+RI+LD K+ L+S ++KTA P+ Sbjct: 198 LRGTTAAVMCGIQTVLKDDPLLTCRIKGEELNQPVRIVLDTELKIPLESNLVKTANEVPL 257 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II T +D A +K +I + + D+ ++L L + S+LVE G ++ S Sbjct: 258 IIFTCSDS-AKKSALEEKGAKVIQIEKKDSHIDILQVLKKLGEFSIDSVLVESGGSLNSS 316 Query: 302 FI-----NSRLVDSIILYRSQIVIGE--GGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 LV+ ++ + + ++G G + SP++ N F D Sbjct: 317 LFFYGKEKKCLVNKVLCFVAPKILGGINGTVHSPVQGIECSSLLSCVNLALKNVKTFSGD 376 Query: 350 VCLEYIGKNLCLQE 363 + LEY K CL+E Sbjct: 377 LLLEYDFKEPCLEE 390 >gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM 16069] gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM 16069] Length = 372 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 190/371 (51%), Gaps = 15/371 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D+ +M+ A++ + T TNP V C++VKD I+IG G G HAE+ AL Sbjct: 1 MSFTAQDSSYMARAIQLAPRGWFTTRTNPRVGCVLVKDNIIIGEGWHEKPGFAHAEINAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE A+GATAYVTLEPC+H+G++ PCA+ ++E G+ RVV + DP+ V+G+G++ L Sbjct: 61 NHAGESAKGATAYVTLEPCAHHGKTGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILE 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + +M+++ + ++ R + + K+ +S D MA S ITG + Sbjct: 121 KAGIKTEYGLMQAQAETLNPGFIKRMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLDSK 235 + V LRA+S AI+ G GTV+ D+P + R + P+R+I+D + D+K Sbjct: 181 RRDVQRLRAESGAIITGSGTVVIDNPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTS 289 I ++ + +K + ++ DLK LL +L G+ Sbjct: 241 IFSHEGHC-WLVSGHLSEKGYPANVEQKTVALLPGKDEVSHQKVDLKALLIMLAEAGIND 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346 +L+E G+ + +F+ LVD +++Y + ++G P PLE Sbjct: 300 VLIEAGSGLVGAFVAQELVDELVVYMAPKLMGSAARPMFQLPLETMQQNIELTLNDIRQI 359 Query: 347 GSDVCLEYIGK 357 G+D+ L Y K Sbjct: 360 GNDLRLNYYFK 370 >gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas haloplanktis ANT/505] gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudoalteromonas haloplanktis ANT/505] Length = 377 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 114/366 (31%), Positives = 181/366 (49%), Gaps = 18/366 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D +M+ A+ ++ T+ NP+V C++VK+ +IG G G HAEV AL Sbjct: 6 TFTEHDEMYMARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNALA 65 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG+ A+GATAYVTLEPCSHYGR+PPCA+ + G+ +V+ + D + +V+G+GL+ LS Sbjct: 66 VAGKNAQGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSD 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++ES+ + + R + ++ K+A S D + S IT ++ Sbjct: 126 AGIDVAYGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAAR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSL 232 V L RA+S AIL G TVL DD +L RL+ L P+R+I+D +L+ Sbjct: 186 QDVQLYRAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTP 245 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291 D + + + VII T D L K+I + + + DL+ +L L ++ Sbjct: 246 DLALF--EIQSDVIIFTTKVDKSLQWPHFVKHIEVSESNGKVDLQAVLEKLGQLQFNNVW 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYF 346 +E GA +A LVD + Y + ++G S + L V Sbjct: 304 LEAGATLAGKMTELNLVDEFVFYLAPKLMGHD-AKSLVNFPELTSMQNTVDLTFNECARI 362 Query: 347 GSDVCL 352 G D+ + Sbjct: 363 GDDLRI 368 >gi|251777591|ref|ZP_04820511.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081906|gb|EES47796.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 363 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 115/361 (31%), Positives = 184/361 (50%), Gaps = 13/361 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL ++ G + NP V LIVKD +IG G G HAEV A+ A + Sbjct: 3 EKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGAGYHEKYGESHAEVNAINNATKSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSG+ ++ L I V Sbjct: 63 DGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGKSIKKLKDNDIEVI 122 Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +E E K +++ + LK A+S D I + S IT S+ HLL Sbjct: 123 VGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGHLL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI T++ DDPELTCR+ +P+R+I+D + ++ L+SK++ + ++ Sbjct: 183 RNKLSAIMVGINTIIEDDPELTCRI--KNGKNPIRVIVDSNLRIPLNSKVLNNSDKLTIV 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T+ D + K + +I + + DLK+L+ L + S+L+EGG + S Sbjct: 241 ATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLNFSA 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 + +VD + Y + ++G S + K + + D+ +E YI Sbjct: 301 LEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDIVIEGYIN 360 Query: 357 K 357 K Sbjct: 361 K 361 >gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240149] Length = 369 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 187/365 (51%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I + ++G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL +L+ +L G ++VE GA Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGA 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G DV Sbjct: 301 KLTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDVKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|212634188|ref|YP_002310713.1| riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3] gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3] Length = 373 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 132/375 (35%), Positives = 198/375 (52%), Gaps = 22/375 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + MS A+ ++ + T NP V +IVKD +++G G G PHAEV AL Sbjct: 2 WSTEDNQMMSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+GATAYVTLEPCSHYGR+PPCA+ +IE G+ RVVV V DP+ +VSGRG+ L Sbjct: 62 AGNDAKGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ K +L R + +T+K+A S D ++ S ITG ++ Sbjct: 122 GIQVDVGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V +RA+ A++ G+ TVLAD+P L R + L + H P+R+ILD +L Sbjct: 182 DVQRIRARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQARLD 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGV 287 + I ++ +PV++V+ D P + +++ D L+ LLT+L Sbjct: 242 AELAIF--SVTSPVLLVSTRDYPESVKSAWPAHVSHQVLPATDNRVELQALLTLLGKT-C 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRR 343 S+LVE GA +A +F+ S VD IILY++ ++G GG + + N + Sbjct: 299 NSVLVEAGATLAGAFVASHCVDEIILYQAMKILGAGGRDLLALPDFEKMSEIPNIDVIDE 358 Query: 344 DYFGSDVCLEYIGKN 358 G D L N Sbjct: 359 RKVGKDTRLTLRMSN 373 >gi|95929567|ref|ZP_01312309.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans DSM 684] gi|95134264|gb|EAT15921.1| riboflavin biosynthesis protein RibD [Desulfuromonas acetoxidans DSM 684] Length = 364 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 126/356 (35%), Positives = 190/356 (53%), Gaps = 14/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G T+ NP V +IV+DG V+GRG G PHAEV AL +A ++ARGA Sbjct: 1 MQIALDLARKALGRTTPNPPVGAVIVRDGQVVGRGFHPKAGEPHAEVFALRDAADQARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 AYVTLEPCSH+GR+PPC + +I G+ RV V + DP+ +VSG+G++ L G+ + + Sbjct: 61 DAYVTLEPCSHHGRTPPCCEALIAAGVSRVFVGLIDPNPQVSGQGVERLRAAGVEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E++ + + ++ + R LK A++ D S IT S+ VH LR Q Sbjct: 121 LETQCRRLIAPFIKHMISGRPLFILKSALTLDGRTATRTGHSQWITSARSREHVHRLRDQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG GT L D+P LT RL H P+RI++D +L S +I +P +VT Sbjct: 181 VDAIMVGSGTALRDNPRLTTRLT-PPGHDPIRIVVDSRLQLPETSHLINHQSASPTWVVT 239 Query: 250 -ENDDPVLALAFR-KKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 DP A + + ++ DL L +L R + S+LVEGG+ + S Sbjct: 240 VAQADPAKIKALQVHAGVEVMTVAATSAGQVDLPALADMLGQRDIQSVLVEGGSVLNQSL 299 Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFMCVRRDY----FGSDVCLE 353 ++ L+D +++Y + ++G G +G + RD+ G DV LE Sbjct: 300 FSAGLIDRVMVYMAPKLLGGNDGFGLFTGQGVDHLDDALQLRDFRVTCLGDDVLLE 355 >gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus ES-1] gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus ES-1] Length = 363 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 189/357 (52%), Gaps = 9/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D+++M+ ALR + + TS NP V C++VK V+G G G PHAEV AL Sbjct: 1 MNAADSQWMALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GATAYVTLEPCSH+GR+PPCA ++ GI+RVV + DP+ +V+G+G+ L Sbjct: 61 AGKSAKGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME + +++R + K+A S D +A S ITG ++ Sbjct: 121 GIGVECGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARC 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA+S A+L GIGTVLADDP+L R P+R++LD ++S ++I++ Sbjct: 181 DVQHWRARSCAVLTGIGTVLADDPQLNVREMPA-ARQPLRVVLDSELRISSQAEILRNGH 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A V D + AL+ R + + DL ++ L RG+ +LVE G + Sbjct: 240 -ALVYTACTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELN 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + + LVD ++LY + ++G+ L + GSD+ + Sbjct: 299 GALLKAGLVDEMVLYLAPQLLGDAARGLAELGELTQLQQRVPLQWQDVRQVGSDLRI 355 >gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912] gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Bacillus tusciae DSM 2912] Length = 371 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 201/366 (54%), Gaps = 13/366 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V +IVKDG ++G+G G PHAEV AL AGE+ Sbjct: 3 DEDWMRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPC H+GR+PPC++ +IE G+ RVVV + DP+ V+G G++ L Q G+ + Sbjct: 63 ARGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + + ++ R R + KIA++ D I S ITG ++ +VH Sbjct: 123 EVGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR++ DA++ G+GTV+ADDP LT R G P+R++LD ++ D++I+ T Sbjct: 183 LRSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPT 242 Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 V+ P +A + +++ D DL+++ L GV + LVE G + Sbjct: 243 VVCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRL 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 S S LVD ++ + + ++ GIP+ EG +E+ + + G +E +G++ Sbjct: 303 QGSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEG-VERLAQSAQLEITG----VETVGED 357 Query: 359 LCLQEL 364 L + L Sbjct: 358 LKVTAL 363 >gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7] gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7] Length = 383 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 183/365 (50%), Gaps = 18/365 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M+ A+ ++ T+ NP+V C++VKD +IG G G HAEV AL Sbjct: 7 FTEHDKLYMARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNALAV 66 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSHYGR+PPCA+ + GI++V+ + D + +V+G+GL+ LS Sbjct: 67 AGEKAQGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDA 126 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + + R + ++T K+A S D + S ITG ++ Sbjct: 127 GIEVAHGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARK 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLD 233 V L RAQS AIL G TVL D+ +L R + L P+R+I+D +L+ D Sbjct: 187 DVQLYRAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPD 246 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 + K + PVII T D + K+I + + DL +L L ++ + Sbjct: 247 LALFK--IAHPVIIFTTKVDNSMQWPHFVKHIAVREQQGKVDLTDVLQTLAKHQFNNIWL 304 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FG 347 E GA +A L+D + Y + ++G S + L + + G Sbjct: 305 EAGATLAGKMTELDLIDEYVFYIAPKLMGYD-AKSLVNFPELTSMQDTIDLSFNECVRIG 363 Query: 348 SDVCL 352 D+ + Sbjct: 364 DDLRI 368 >gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96] gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96] gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Erwinia pyrifoliae DSM 12163] Length = 367 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 185/366 (50%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL +R T+ NP+V C++V+DG ++G G G PHAEV AL AGE+ Sbjct: 3 DEIYMARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 + GATAYVTLEPCSH+GR+PPC + +I GI+RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 SLGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLAD+P LT R + L P+R+I+D +++ + Sbjct: 183 LRAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEY 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +++ A + + D + I +Y + DL LL +L + + S+ VE Sbjct: 243 RLV--AQPGETWLARTSGDRQQWPENVSQLIVPLYQNRLDLVSLLMLLGKKQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GA A + + + +VD +I+Y + ++G+ G LE F G D+ Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360 Query: 351 CLEYIG 356 L Sbjct: 361 RLTLTP 366 >gi|126738756|ref|ZP_01754452.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6] gi|126719937|gb|EBA16644.1| riboflavin biosynthesis protein RibD [Roseobacter sp. SK209-2-6] Length = 370 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 137/360 (38%), Positives = 193/360 (53%), Gaps = 11/360 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL R G NP+V C+IVK+G ++GRG T GG PHAE QAL +AGE Sbjct: 10 DARYMALALSLGRRGQGKCWPNPAVGCVIVKEGRIVGRGWTQPGGRPHAEPQALAQAGEA 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G +PPCAQ +I+ G+ VV ++D D RVSG+G + L GI + Sbjct: 70 ARGATAYVTLEPCSHFGETPPCAQALIDAGVSHVVAAIEDSDPRVSGQGFEMLRMAGITV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + + + + R +TLK+A S D I S ITG ++ +VH Sbjct: 130 RTGVLAEEAGLDHAGFFYKTEQGRPWVTLKLASSFDGRIATGSGQSKWITGPEARRRVHA 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA++VG GT ADDP LT R G+ E P+R+++ H L L ++ +TA PV Sbjct: 190 MRACHDAVMVGGGTARADDPSLTVRDLGVAE-QPVRVVISRHLDLPLMGQLARTAKEVPV 248 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 + D A+ ++ C D +L L G+T + EGG+A+A Sbjct: 249 WLCHGAGADVERIQAWEGLGARLLPCAAHGVQLDPNDILQQLGAAGLTRVFCEGGSALAA 308 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 S + LVD +I + + + IG G+PS L F V G DV + Sbjct: 309 SLLAFDLVDELIGFTAGLGIGAEGLPSIGALGLTGLERAGRFDLVETTPVGGDVLHRWHR 368 >gi|219849511|ref|YP_002463944.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM 9485] gi|219543770|gb|ACL25508.1| riboflavin biosynthesis protein RibD [Chloroflexus aggregans DSM 9485] Length = 409 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 121/341 (35%), Positives = 174/341 (51%), Gaps = 10/341 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M +M AL ++ G TS NP V +IVKDG ++G G G PHAEV+AL Sbjct: 1 MCQHPDPETYMRRALVLAQQAAGRTSPNPMVGAVIVKDGRIVGEGYHRRAGEPHAEVEAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGAT YVTLEPC+H GR+PPC II GI V + DP+ VSG+G L+ Sbjct: 61 RVAGEAARGATMYVTLEPCAHVGRTPPCTDAIIAAGITEVYYAIADPNPLVSGKGHAQLA 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E+E + R +T K A+S D I S I+ + Sbjct: 121 AAGIRVQCGVCEAEAFELNRPFFKHITTGRPFVTAKFAMSLDGKIATVIGQSRWISNAAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE---HSPMRIILDPHFKLSLDSKI 236 + +VH LR ++DA+LVG GTV+ADDP LT RL L P+RI+ D ++ L +K+ Sbjct: 181 RRRVHHLRNRTDAVLVGAGTVIADDPSLTTRLPDLSPDSIRHPLRIVADSRGRVPLSAKV 240 Query: 237 IKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSL 290 L ++ T P A ++ +++ D L L L RG+ S+ Sbjct: 241 FDPDLPGQTVVATTELIPADHRRALVERGVDVWLLPASDDGRVRLSALFDELGRRGMLSV 300 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 LVEGG+ + + RL+D + ++ + ++IG P P+ Sbjct: 301 LVEGGSELLGACFCERLIDRVWVFMAPLIIGGQHAPGPVGG 341 >gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC 43768] gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC 43768] Length = 369 Score = 349 bits (896), Expect = 3e-94, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 186/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + TS NP V C+I + G V+G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGKMAKGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ESE K +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKMECGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPYSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|119774153|ref|YP_926893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella amazonensis SB2B] gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella amazonensis SB2B] Length = 378 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 S+ D M+ A+ ++ T NP+V C+IV D G ++G G G PHAEV AL+ Sbjct: 7 FSALDRAMMARAIMLAKRGQYTTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALK 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A ++ARGATAYVTLEPCSHYGR+PPCA+ +I+ G++RVVV + DP+ +V+GRG++ L Sbjct: 67 AAADKARGATAYVTLEPCSHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQD 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + +ME+E + +L+R KR +T+K+ S D ++ S ITG ++ Sbjct: 127 AGIEVAHGLMEAEARALNPGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKL 230 V LRA+S A++ GI TVL DDP L R L + P+R++LD ++ Sbjct: 187 RDVQRLRAKSCALITGIDTVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRM 246 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRG 286 S D+K+ + P+++V+ L + + DL LL+ L Sbjct: 247 STDAKLF--GITGPILLVSAEPYDEKFLHSLPDFVTCLILPGSHGRIDLAALLSHLGE-N 303 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVR 342 +LVE G +A +FI + L D ++LY++ ++G G Y + Sbjct: 304 CNRVLVEAGGTLAGAFIAAGLCDELVLYQAPKLLGSHGRDMLQLPDYQTMAEVPGLKLID 363 Query: 343 RDYFGSD 349 G D Sbjct: 364 ERKVGQD 370 >gi|85860188|ref|YP_462390.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophus aciditrophicus SB] gi|85723279|gb|ABC78222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophus aciditrophicus SB] Length = 380 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 175/324 (54%), Gaps = 9/324 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ +R G S NP V +IVK+ +IG G G HAE+ AL A E Sbjct: 3 DEFYMKRALQLARKGEGWVSPNPMVGSVIVKNDRIIGEGYHRKFGEAHAEINALNGAKES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A G+T YV+LEPCSHYG++PPC + ++ C +RVV+ DP+ V+GRG+ L + GI + Sbjct: 63 AEGSTIYVSLEPCSHYGKTPPCVERLVACRPKRVVIGTTDPNPLVAGRGIGILKRNGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E + ++L + +TLK A + D I + S I+ S+ H Sbjct: 123 TVGVLEEVCREINESFLKFIQFRIPFVTLKYAQTLDGRIATSTGHSRWISSPPSRRFAHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR DAILVGIGTVL+DDPELT RL ++ +P+RI+LD ++ L ++I++ A Sbjct: 183 LRHAHDAILVGIGTVLSDDPELTVRL--VRGKNPLRIVLDSRLRIPLTARILQEQDQAKT 240 Query: 246 I-IVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299 + + T++ D + I + DL +LL L RG+ S+LVEGG+ + Sbjct: 241 LMVTTDHADRKKLSQLNDRGIETLILPVESSGRIDLNRLLRELGSRGIASVLVEGGSGIL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEG 323 + + L D +I + + G G Sbjct: 301 TALMAQDLADRLIAIIAPKISGRG 324 >gi|326791794|ref|YP_004309615.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM 5427] gi|326542558|gb|ADZ84417.1| riboflavin biosynthesis protein RibD [Clostridium lentocellum DSM 5427] Length = 363 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 188/360 (52%), Gaps = 19/360 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G S NP V ++VK+G +IG G G HAEV A++ A +++ Sbjct: 3 ENYMRYALNLAKQGGGKVSPNPLVGAVLVKEGRIIGEGYHEVYGANHAEVNAIKSASQKS 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT YVTLEPC+HYG++PPC + II+ I RVVV + DP+ V+G G++ L GI ++ Sbjct: 63 EGATLYVTLEPCNHYGKTPPCTETIIQNKIMRVVVGMRDPNPLVAGSGIKRLEDAGIEVI 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + ++ ++ + LK A++ D I S ITG S+ VH L Sbjct: 123 VGILEEECRKLNEIFIKYITKQEPFVLLKAAMTLDGKIATVAGQSKWITGEASREMVHQL 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ILVGIGTV+ DDP LTCRL + +P+ I++D ++ + SKII + VI Sbjct: 183 RNAYSGILVGIGTVIKDDPLLTCRL--VSGRNPVIIVVDSTLRIPMSSKII--GGTSKVI 238 Query: 247 IVT----ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298 I E + + +++ + +LK+L+ L G+ S+L+EGGA V Sbjct: 239 IAAVKEIEEMAVDKVKKLEELGVKVLFIEAYKHRVNLKELMIQLGKLGIDSILIEGGAEV 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLE 353 S + + +VD + Y + ++G +P+ + ++ + G D+ LE Sbjct: 299 NASALEAGIVDKVQFYIAPQIVGGQ-AKTPVAGRGIADLEESIKVENLQIKRIGEDILLE 357 >gi|188589601|ref|YP_001920640.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str. Alaska E43] gi|188499882|gb|ACD53018.1| riboflavin biosynthesis protein RibD [Clostridium botulinum E3 str. Alaska E43] Length = 366 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 115/361 (31%), Positives = 183/361 (50%), Gaps = 13/361 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL ++ G + NP V LIVKD +IG G G HAEV A+ A + Sbjct: 6 EKYMELALELAKKGEGKVNPNPLVGALIVKDNEIIGSGYHEKYGEAHAEVNAINNATKSL 65 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T YVTLEPCSHYG++PPC IIE I++V++ + DP+ VSGR ++ L I V Sbjct: 66 DGSTIYVTLEPCSHYGKTPPCVDLIIEKKIKKVIIGMLDPNPMVSGRSIKKLKDNDIEVI 125 Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +E E K +++ + LK A+S D I + S IT S+ HLL Sbjct: 126 VGVEEEKCKKINESFIKYITSNLPFVILKSAISLDGKIATSIGESKWITSEESRRDGHLL 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + AI+VGI T++ D+PELTCR+ +P+R+I+D + ++ L SK++ + ++ Sbjct: 186 RNKLSAIMVGINTIIEDNPELTCRIE--NGKNPIRVIVDSNLRIPLKSKVVNNSDKLTIV 243 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T+ D + K + +I + + DLK+L+ L + S+L+EGG + S Sbjct: 244 ATTKYADKLKKQELINKGVRVIEINDKNKKVDLKELMRCLGTLKIDSILIEGGGTLNFSA 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YIG 356 + +VD + Y + ++G S + K + + D+ +E YI Sbjct: 304 LEENIVDKVRFYIAPKILGGERSKSSIGGEGFFKLSDAVKLKELTYEKLSEDIVIEGYIN 363 Query: 357 K 357 K Sbjct: 364 K 364 >gi|322834072|ref|YP_004214099.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602] gi|321169273|gb|ADW74972.1| riboflavin biosynthesis protein RibD [Rahnella sp. Y9602] Length = 378 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 118/366 (32%), Positives = 180/366 (49%), Gaps = 18/366 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D +M+ A +R T+ NP+V C+IV +G ++G G G PHAEV AL A Sbjct: 10 NPTDEHYMARAFELARRGRFTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+A+GATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q G Sbjct: 70 GEKAKGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPEVAGRGLYRLKQNG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + +M + + +L R ++ LK+ S D MA S IT ++ Sbjct: 130 VDVSHGLMHPQAEAVNLGFLKRMRTGFPYVQLKMGASLDGRTAMASGESQWITSAAARAD 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKLS 231 V RA+S AIL TVLAD+P L R P+R+ILD +++ Sbjct: 190 VQRFRAESSAILSTSATVLADNPSLNVRWSELGSEVQAIYPEENLRQPLRVILDSQNRVT 249 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 +++ L V + D + ++ + DL L+ L R + S+ Sbjct: 250 PQHQVVN--LPGEVWLARLEADTQVWPGSVEQWRVAGRDNRIDLVLLMMQLAKRQINSIW 307 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347 VE GA +A + + + LVD +I+Y + ++G+ G L+ F+ G Sbjct: 308 VEAGAQLAGALLQAGLVDELIVYMAPKLLGDNGRALCELPGLQHLADAPEFVFNDIRQVG 367 Query: 348 SDVCLE 353 SD+ L Sbjct: 368 SDLRLR 373 >gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas mendocina ymp] gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas mendocina ymp] Length = 371 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 183/369 (49%), Gaps = 14/369 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 1 MSERDHLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+GRGL L+ Sbjct: 61 AGERARGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++E+E + ++ R + +K A+S D MA S ITG ++ Sbjct: 121 GIEVLSGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 +V LRAQS +L G TVLADD LT R + L P+R+++D ++ Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 L + + DL+KLL L GRGV +L Sbjct: 241 LSKAFFQVGPALVATCAAAAARDRYLADDHELLAVPGSNGHVDLRKLLQELAGRGVNEVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348 VE G +A +F + LVD ++ + ++G P PL V G Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARPLFELPLNRMAEAPELQIVDIRAVGD 360 Query: 349 DVCLEYIGK 357 D + + K Sbjct: 361 DWQITAVPK 369 >gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2] Length = 404 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 116/366 (31%), Positives = 191/366 (52%), Gaps = 20/366 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA 63 D +M+ A+R ++ TS NP V C+IV + IG+G G PHAE+ AL EA Sbjct: 36 EIDYYWMAKAIRLAQKGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREA 95 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G++A+GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV+ + DP+ VSG G++ L G Sbjct: 96 GKKAKGATAYVTLEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAG 155 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + +M +E ++ R + + ++ +K+ +S D I + S ITG ++ Sbjct: 156 IEVSSDIMSAESAALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRD 215 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS 234 V RAQS A+L G GTV AD+P L R + + P+RII++ LS D Sbjct: 216 VQHYRAQSCAVLTGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQPVRIIVNSADDLSRDY 275 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVE 293 + + P +V+ + A ++++ + + + D+ KL+ L + VE Sbjct: 276 RCMNDG--HPTFVVSTQNS---ADTDNRQHLTVDAMNGKVDISKLMLQLGDMQFNEVWVE 330 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSD 349 G +A + + + VD +I Y++ ++G+ G+ + E N + G+D Sbjct: 331 AGPGLAGALLIAGEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGND 390 Query: 350 VCLEYI 355 + L Y+ Sbjct: 391 IKLRYL 396 >gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8] gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Marinobacter aquaeolei VT8] Length = 363 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 185/359 (51%), Gaps = 17/359 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+ A++ + T NP V C+I K +++G G G HAEV+AL +AG EARG Sbjct: 1 MMARAVQLAWRGRYSTHPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQAGHEARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATAYVTLEPCSHYGR+PPCA+ +I+ G+ V DP+ VSGRGL L + GI + + Sbjct: 61 ATAYVTLEPCSHYGRTPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVTEG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M E ++ R R + LK+A S D MA S ITG ++ V LRA Sbjct: 121 VMADEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTA 240 SDAIL G+GTVLADDP LT R + + + P+R+I D + ++I++ Sbjct: 181 ISDAILTGVGTVLADDPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQGG 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + V + A +++ + D+ +LL L G+ LLVE G Sbjct: 241 NVQ-VFCASSTLASGPAQDLAALGVSLTGVAWKDNGVDVAELLDALGELGINELLVEAGP 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +FI LVD + LY++ + +G G P+ PLE + + + R G D L Sbjct: 300 TLAGTFIGENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQRL 358 >gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus NJ8700] gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus NJ8700] Length = 374 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 129/372 (34%), Positives = 191/372 (51%), Gaps = 19/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S DA FM AL ++ + NP+V C++VK+G +IG+G A G PHAEV AL E Sbjct: 5 FSLKDAEFMQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA+ +++ G+R V+ + DP+ V+G+GL L+ Sbjct: 65 AGENARGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADA 124 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + E +L R R + LK+A+S D MA S ITG ++ Sbjct: 125 GIESAVGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARA 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL TVLAD+P L R L + P+R+ILD K+ Sbjct: 185 DVQQYRAKASAILSTSQTVLADNPSLNVRWAELPQEVQSRYAEQHLRQPVRVILDSAHKV 244 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTS 289 D + T +PV + ++ + + + +I L+ L+T L R + + Sbjct: 245 RSDFNLFLTD--SPVWLAGKDKFQLNGFPASTEYLQLIPNQGESHLQTLMTELGRRQINT 302 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345 L VE GA +A + I LVD +I+Y + ++G+ L + + + Sbjct: 303 LWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTKLADAPLWELQLCEP 362 Query: 346 FGSDVCLEYIGK 357 G+D+ L YI K Sbjct: 363 VGNDLKLIYIRK 374 >gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacillus flagellatus KT] gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methylobacillus flagellatus KT] Length = 377 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 134/360 (37%), Positives = 188/360 (52%), Gaps = 16/360 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D +M+ ALR + + TS NP V C+IVKDG V+GRG G PHAEV AL Sbjct: 12 FSASDHHYMNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALRM 71 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A GA AYVTLEPCSH+GR+PPCA +++ G+RRVV + DP+ VSG GL+ LS Sbjct: 72 AGGQAAGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLSTH 131 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + +++R +R + KIA S D G+ S ITG ++ Sbjct: 132 GIEVAYGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSARQ 191 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKII 237 V RAQS AIL G+GTVLADDP LT R L P R+I+D + + + Sbjct: 192 HVQQWRAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAATL 251 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 + V+I PV A R +I DL+ LL L R + ++VE Sbjct: 252 Q---AGRVLIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVE 308 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349 GA + S + LVD ++LY + +++G G L+E + + G+D Sbjct: 309 AGARLNGSLLYGGLVDELLLYYAPVLLGGGARDMFTMPALQEMQQKIQLHALDFRQVGAD 368 >gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D] gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D] Length = 370 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 180/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C+IV+D VIG G T G HAEVQA+++ Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + ++E E + +++R + +K+ S D + S IT Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A ++ +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|46201728|ref|ZP_00208227.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 358 Score = 348 bits (894), Expect = 6e-94, Method: Composition-based stats. Identities = 141/357 (39%), Positives = 204/357 (57%), Gaps = 11/357 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AAL +R +G NP+V C+IV+DG V+GRG T GG PHAE +AL AG A GA Sbjct: 1 MRAALALARRGLGTVWPNPAVGCVIVRDGRVVGRGWTQPGGRPHAETEALAMAGRAANGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+H+G++ PCA +I G+ RVVV V DPD RV+G+G+ L GI + + + Sbjct: 61 TVYVTLEPCAHHGKTAPCADALIAAGVSRVVVAVQDPDSRVAGKGIDRLRVAGIPVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + R R +TLK+A + D I S ITG ++ HLLRA+ Sbjct: 121 LHAEASELNAGFFLRINTGRPLVTLKLATTLDGRIATHTGESRWITGEQARAAAHLLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +DAI+VG GT L DDP+LTCRL GL E SP+R+++D +L L S+++ TA P ++T Sbjct: 181 TDAIMVGSGTALHDDPDLTCRLPGLVERSPVRVVVDGRLRLPLTSRLVSTANEVPTWLLT 240 Query: 250 END-DPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D D A+ ++++ DL+ L L GVT +LVEGGA ++ + + Sbjct: 241 LEDCDSDRREAYEDAGVDVVEVSPGPDGAVDLELALQALGESGVTRVLVEGGAHLSAALL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIG 356 + LVD ++ +R+ ++G G+P+ + G +F V G DV YI Sbjct: 301 RAGLVDRMVWFRAPRLMGGDGLPAAVSFGIDHLAQTPHFERVEIRALGDDVMETYIR 357 >gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2] gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2] Length = 373 Score = 348 bits (894), Expect = 7e-94, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 189/371 (50%), Gaps = 17/371 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D ++M+ A+ ++ TS NP+V C++VKDG ++G+G G HAEV AL Sbjct: 1 MSFTALDYQYMALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E+A GATAYVTLEPCSH GR+ PCA ++ G+ +V+ + DP+ VSGRGL L Sbjct: 61 AQAKEQALGATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILE 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +M+ E + +L R + K+A S D +A S ITG ++ Sbjct: 121 KAGIQTAHGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLS 231 + QV RAQS A+L G TVL D+ ++ R + L Q P+R+++D +L+ Sbjct: 181 RAQVQDYRAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLT 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSL 290 D + + +PVII+T D ++ + + DL + + +L RG+ + Sbjct: 241 PDLAFFQ--IESPVIILTTKLDISERWPHFVSHLLVPELNGQVDLSQAMQLLGARGINHI 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +E G +A LVD I Y + +IG G S L+ LE DV Sbjct: 299 WLEAGHTLAGQMAQQGLVDQFIFYLAPKLIGHSG-KSLLQLPVLESMAEVTELSI--DDV 355 Query: 351 CLEYIGKNLCL 361 + +G +L + Sbjct: 356 SM--VGVDLKI 364 >gi|121634268|ref|YP_974513.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis FAM18] gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis FAM18] gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Neisseria meningitidis alpha153] gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190] gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ES14902] Length = 369 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 186/366 (50%), Gaps = 11/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGKN 358 + + Sbjct: 361 VFRKND 366 >gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J] gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J] Length = 370 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 180/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + ++E E + +++R + +K+ S D + S IT Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAIN-TPRQPRRVLIDSALDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A ++ +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGFKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|170078074|ref|YP_001734712.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002] gi|169885743|gb|ACA99456.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7002] Length = 371 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 116/361 (32%), Positives = 190/361 (52%), Gaps = 7/361 (1%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + FD M + ++ G T+ NP V ++V+D +IG G G PHAEV AL EA Sbjct: 10 TDFDRAMMQRCITLAKQAAGKTAPNPMVGAVVVQDQKIIGEGFHPGAGQPHAEVFALREA 69 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GAT YV+LEPC+H+GR+PPC+Q +++ GI +VVV + DP+ V+G GL+ L+ G Sbjct: 70 GAAAQGATLYVSLEPCNHHGRTPPCSQAVVKAGISKVVVGMVDPNPLVAGGGLKTLTDAG 129 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + E+ + ++ R V +R LK A++ D I S IT ++NQ Sbjct: 130 IEVVTGVEEAACRALNAGFVWRMVHQRPLGILKYAMTLDGKIATTTGHSAWITHQETRNQ 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V+ LR+Q DA++VG TV DDP LT G +H+P+RI++ L D + Sbjct: 190 VYDLRSQCDAVVVGGNTVRLDDPYLTTH--GTADHNPLRIVVSQTLTLPRDRHLWDVTAA 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 V++ +P + R++ + +++ D + ++ L RG +L E G +A + Sbjct: 248 PTVVLTQATANPEMQAFLRQQGVEVVHLDPVSPEGVMQYLYDRGCLQVLWECGGTLAAAA 307 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 I S + ++ + + +IG G P+P+ L + + +V L+ IG + L Sbjct: 308 IASGSIQKVMAFIAPKIIGGQGAPTPVGNLGLTLMDEAITLE----NVQLQSIGHDFLLT 363 Query: 363 E 363 Sbjct: 364 G 364 >gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107] gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107] Length = 383 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 193/380 (50%), Gaps = 23/380 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+ ALR + + T NP V C++VK+ +I G G HAEV AL Sbjct: 1 MALTRDDHRFMARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A E+ARGATAYVTLEPC+H G++ PC+Q +I+ G+ RVV ++DP+ VSGRGL+ L+ Sbjct: 61 RIAAEQARGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLA 120 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD + E + + ++TR KR + K+A+S D MA S IT + Sbjct: 121 AAGIEVDGPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTC--------RLNGLQEHSPMRIILDPHFKLS 231 + V LRA S AI+ GIG+VL D+ +LT R + P+R+ILD +L Sbjct: 181 RADVQRLRAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLP 240 Query: 232 LDSKIIKTAL-------LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLT 280 D+ I++TA P+++V L ++ ++ R DL+ L+ Sbjct: 241 RDALIMQTADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVR 300 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKN 337 L R +L+E GA +A +F+ L+D +++Y + ++G P PLE Sbjct: 301 ELAQRQCNEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARPLFELPLETMSASLA 360 Query: 338 FMCVRRDYFGSDVCLEYIGK 357 G D + + Sbjct: 361 LKITDMRALGQDWRITAVPD 380 >gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA] gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA] Length = 370 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 180/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C+IV+D VIG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAEKGLFTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G++ RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQSRGQDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + ++E E + +++R + +K+ S D + S IT Sbjct: 122 RDAGVDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P R+++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVRAVN-TPRQPRRVLIDSALDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A ++ +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD +++Y + V+G G PL+ F G D+ Sbjct: 301 AGFKLNGSLLREGLVDEVLVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4] gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4] Length = 373 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 117/329 (35%), Positives = 181/329 (55%), Gaps = 14/329 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ AL+ + + T NP V C++V+ G ++G G + G HAEV AL +A Sbjct: 6 DRAYMARALKLAWRGLFTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPC H GR+PPC + +IE G+ RVV + DP+ +V+G+GL L + G+ + Sbjct: 66 ARGATCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + ++ R V+ R + K+A+S D +A S IT ++ V Sbjct: 126 EYGLLQEEAQALNPGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKIIK 238 RA+S AIL GIGTV+ DDP L R LQ + P R+ILD +S ++++ Sbjct: 186 WRARSSAILTGIGTVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLL- 244 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 +L PV+I + + A + R K +I DLK L+ +L R + L VE Sbjct: 245 -SLPGPVLIACADGEQPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVEC 303 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 GA +A S + + L+D ++LY + ++GE Sbjct: 304 GARLAGSLLQAGLMDELVLYIAPKLMGEA 332 >gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinobacter sp. ELB17] gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Marinobacter sp. ELB17] Length = 371 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 17/371 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D FM+ A++ + T NP V C+I + ++G G HAEV+AL + Sbjct: 2 ITTRDRAFMARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG+TAYVTLEPCSH+GR+PPCA+ +IE G+ RV DP+ VSGRGL+ L Sbjct: 62 AGTSARGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E ++ R R + LK+A S D MA S ITG S++ Sbjct: 122 GIRVHVGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRS 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLD 233 V LRA SDAIL G+GTVLADDP LT R + P+R+I D + Sbjct: 182 DVQRLRAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPAS 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +KI + + V T + A I + D + ++L L G+ Sbjct: 242 AKIFRGGKVQ-VFCATASLATSAAQDLAALGIRLRGVAWHDKGVNVAEMLDTLGDIGINE 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346 +LVE G +A SFI+ LVD + LY++ + +G G P+ PLE + + + R Sbjct: 301 VLVEAGPTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQL 360 Query: 347 GSDVCLEYIGK 357 G+D L + Sbjct: 361 GADQRLILARR 371 >gi|255994555|ref|ZP_05427690.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC 49989] gi|255993268|gb|EEU03357.1| riboflavin biosynthesis protein RibD [Eubacterium saphenum ATCC 49989] Length = 368 Score = 348 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 182/357 (50%), Gaps = 19/357 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++MS AL + +G TS NP V +IVK+G +IG+G G HAEV+A+++A Sbjct: 10 EKYMSMALELAEKGLGTTSPNPMVGAVIVKNGEIIGKGFHKKAGSAHAEVEAVQDAHSKD 69 Query: 66 -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GA YVTLEPCSH GR+P C+ +I+ I RV + + DP+ V+G G++ L I Sbjct: 70 YDIEGADMYVTLEPCSHKGRTPACSDLLIKEKIGRVFIGMRDPNPLVNGGGIEKLEGALI 129 Query: 125 IVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E +L EK ++ K ++ D I S IT S+ V Sbjct: 130 KCEVGILEERCRQLNKVFLKYVTEKMPYVIFKSGITLDGKIATGTGKSKWITSEESRKDV 189 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLR++ AI+VGIGTVLADDP LT R G + P++II+D +L L++K++ Sbjct: 190 HLLRSRCSAIMVGIGTVLADDPRLTARFEGAYD--PVKIIVDSKLRLPLEAKVVGEDC-- 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++ EN K + II + DL+K + L + S+L+EGGA +A S Sbjct: 246 -IVGCCENVSREKIEELTNKGVKIIKAGKNKVDLRKFMAELAKLEIDSVLLEGGATLAAS 304 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLE------EGYLEKNFMCVRRDYFGSDVCL 352 +LVD I LY + ++ G G S LE + ++ + DV L Sbjct: 305 MFKEQLVDEIRLYMAPMIFGSG--KSFLEGELDIDDVSDAIRIEGMKVEKINEDVVL 359 >gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 377 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 183/367 (49%), Gaps = 21/367 (5%) Query: 1 MPVSS----FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAE 56 M S+ DA +M+ AL +R T NP V C+IV+DG ++G G G PHAE Sbjct: 1 MTASAQQAILDAHYMARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL Sbjct: 61 VHALRAAGEQARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGL 120 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 Q L+Q GI + ++E E + +L R + + +K+A+S D M S IT Sbjct: 121 QRLAQAGIATESGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILD 225 G +++ V LRAQ+ +L G TVLAD+ LT R + L P+R+++D Sbjct: 181 GPAARSAVQRLRAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVD 240 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 ++ LD+ K P ++ T + I DL +LL L GR Sbjct: 241 GRLRVPLDAAFFK---AGPALVATCMAVEEQYANGPECMIVAGDDGQVDLHRLLVELAGR 297 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVR 342 GV +LVE G +A +F LVD ++ + +G P PL + Sbjct: 298 GVNEVLVEAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITE 357 Query: 343 RDYFGSD 349 G D Sbjct: 358 IRAVGDD 364 >gi|220931696|ref|YP_002508604.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase [Halothermothrix orenii H 168] gi|219993006|gb|ACL69609.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino)uracil reductase [Halothermothrix orenii H 168] Length = 371 Score = 347 bits (891), Expect = 1e-93, Method: Composition-based stats. Identities = 128/356 (35%), Positives = 198/356 (55%), Gaps = 13/356 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M L +R G T+ NP V +IV++G ++G+G Y G PHAE+ ALEEAGE ARG Sbjct: 12 YMQKVLELARKGEGYTAPNPLVGAIIVREGEIVGQGFHQYYGGPHAEILALEEAGERARG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YV LEPC HYG++PPC + II+ G++RV+ + DP+ V+G+G++ L + GI + Sbjct: 72 ATLYVNLEPCCHYGKTPPCTKKIIDSGVKRVLAAMFDPNPLVAGKGVKELQENGIEVEVG 131 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + Y+ R + LK A++ D I S I+ ++ H LR Sbjct: 132 LLRKEAERLNEVYIRYISSDRPFVYLKSALTLDGFIATVTGDSRWISNEKARLFAHTLRH 191 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+LVGIGT+L DD LT RL + +RIILDP + D+++I I+V Sbjct: 192 KVDAVLVGIGTILKDDSALTTRLPDGRGEDSIRIILDPELSIPPDARVINQKSRKRTILV 251 Query: 249 TEN--DDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 D+ RK+N+ I+ + LK LL IL +G++S+LVEGG V +S Sbjct: 252 CGEDYDNKKYQGLLRKENLEILSVQLNEEGKIPLKALLRILHKQGISSILVEGGGRVNYS 311 Query: 302 FINSRLVDSIILYRSQIVI-GEGGIPSPLEEGY--LEKNFMC--VRRDYFGSDVCL 352 F+ LVD + + + I++ G+ GI EG +EK + V+ ++F ++ + Sbjct: 312 FLKEGLVDKVYFFIAPIILGGDDGIRVFSGEGVADIEKAWKLRDVQYNFFDDNILI 367 >gi|325295467|ref|YP_004281981.1| riboflavin biosynthesis protein RibD [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065915|gb|ADY73922.1| riboflavin biosynthesis protein RibD [Desulfurobacterium thermolithotrophum DSM 11699] Length = 362 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 194/359 (54%), Gaps = 9/359 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +FM A+ + G T NP+V +IVKDG VI G G PHAE A+ +AG Sbjct: 2 TQDEKFMKLAISEAYKAKGRTLPNPAVGAVIVKDGKVIATGYHERAGLPHAESVAISKAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A+GAT YVTLEPC+HYG++PPC++ II+ GI+RVVV + DP+ V+ G++ L GI Sbjct: 62 EKAKGATLYVTLEPCNHYGKTPPCSEKIIKAGIKRVVVGIRDPNP-VARGGVEKLKNAGI 120 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + ++ EKR ++LK+A + D I S IT S+ V Sbjct: 121 EVKVGVLEKECFELIDDFIVNLKEKRPFVSLKLAATLDGKIADYKGNSKWITSEESRKLV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H+LR+ +A++VGIGTVL DDP L R + P I++DPH K+ L ++IK+ Sbjct: 181 HILRSYHNAVMVGIGTVLKDDPLLNVR-KVPADVQPKAIVVDPHLKIPLSCRLIKSRSED 239 Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYC--DCRDLKKLLTIL-VGRGVTSLLVEGGAAVA 299 +II T E+ AL + K + ++ + +LK L L G+ S++ EGG+ +A Sbjct: 240 LIIITTRESMLSDKALILKGKGVKLLEAGENSIELKIALEKLKGEFGIYSVMCEGGSKLA 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIG 356 S + L+D L+ + ++G G+ +E + +D+ ++ Sbjct: 300 WSLLEGNLIDKFYLFYAPKILGGKGMSMFDGSFSIEDAHQIRLFSINSVSNDLLIKAYR 358 >gi|289423250|ref|ZP_06425061.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius 653-L] gi|289156350|gb|EFD05004.1| riboflavin biosynthesis protein RibD [Peptostreptococcus anaerobius 653-L] Length = 433 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 123/417 (29%), Positives = 192/417 (46%), Gaps = 68/417 (16%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M AL ++ + S NP V +IVKD +IG+G G HAE A+++ Sbjct: 8 EKDQHYMKIALDLAKRGIARVSPNPLVGAVIVKDDQIIGKGYHEKYGGLHAERNAIKDYK 67 Query: 65 EEA--------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A GAT YVTLEPC HYG++PPC + IIE I+RVVV DP+ V+G+G+ Sbjct: 68 NRAINDPNLTIEGATMYVTLEPCCHYGKTPPCTEAIIENKIKRVVVASLDPNPLVAGKGV 127 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L + GI VD +++ E + + KR +T+K A++ D + S IT Sbjct: 128 KILEEVGIEVDIGVLKDEADRQNRIFRHYIINKRPLVTMKYAMTMDGKLATHTGKSKWIT 187 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRI 222 G ++ +VHL R ++ AI+VG+GTVLADDP L CRL +P+R+ Sbjct: 188 GHDARRRVHLDRLRNMAIMVGVGTVLADDPSLNCRLEDFDGFDKIKKDYSIEGLRNPIRV 247 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------- 273 ++D + +SKI+ +A II T ++D A+ ++ +I + Sbjct: 248 VVDSSLRTPFNSKIVTSAKDIKTIIFTISEDMEKIRAYEDRDCIVIKTKKKLYRSIGKKQ 307 Query: 274 --------------------------------DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 DL+ L+ IL G+ S+L+EGG+ + S Sbjct: 308 VQIGQEIQMDQDGHKYQEYQVYQERQGERFVVDLEDLVEILGQMGIDSILLEGGSQLNFS 367 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + S +VD + Y + G SP+ ++ + D G D+ LE Sbjct: 368 ALESGIVDRVQAYIGPKIFGGEKAKSPIGGIGVDLPEDAYMLENIEFDSVGKDILLE 424 >gi|193212377|ref|YP_001998330.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB 8327] gi|193085854|gb|ACF11130.1| riboflavin biosynthesis protein RibD [Chlorobaculum parvum NCIB 8327] Length = 371 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 13/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D M L + G S NP V +IV DG VIG G G PHAE A+ Sbjct: 7 MRPEDEGHMRRCLELAERGAGSVSPNPMVGSVIVHDGRVIGEGWHQKYGGPHAEPHAIAS 66 Query: 63 AGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +EA R +T YV LEPCSH+G++PPCA I+E I RVVV DP +V+G+G+ L Sbjct: 67 VEDEALLRQSTLYVNLEPCSHHGKTPPCADLIVEKCIPRVVVGCLDPHKKVAGKGIARLR 126 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ + ++E+E + A++T + R + LK A + D I + S ITG S Sbjct: 127 EAGVEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEAS 186 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VH LR DA+L G T LADD ELT R P+R++LDP ++ + +I Sbjct: 187 RCEVHRLRCAYDAVLCGASTALADDAELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFND 244 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 A V + + +PVL + + ++ DL ++ L R V S++VEGG Sbjct: 245 AAKTLVFALRDEAEPVLVSQLEARGVEVVLIGQSEGTLDLAQVFAELHRRRVLSVMVEGG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 + ++ + + S +VD ++ + + G+ G+PS + + R + FG D+ Sbjct: 305 SRLSAAMVRSGIVDKYYVFIAPKLFGDDGLPSFGPLDVIRPDMATKLSFTRVERFGEDLL 364 Query: 352 LEYIG 356 +E Sbjct: 365 VEAYP 369 >gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus nematophila ATCC 19061] gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus nematophila ATCC 19061] Length = 369 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 180/370 (48%), Gaps = 18/370 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +MS AL + TS NP+V C+IVKD ++G G G PHAEV AL Sbjct: 1 MMTLDEIYMSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+G++PPCA +I G+ RVVV + DP+ +V+GRGL L Q Sbjct: 61 AGEKAKGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +M + + +L R ++ LK+ S D ++ S IT ++ Sbjct: 121 GIAVEHGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V LRAQ AIL TVLADDP +T R N L P+RII D ++ Sbjct: 181 DVQTLRAQCSAILSSSATVLADDPSMTVRWNELDAETQSVYPEERLRQPIRIITDSQNRV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + ++I+ + N + K+ + + DL L+ L R + S+ Sbjct: 241 TPQHQVIQQTGQ--CWLAYTNKNEQHWPDNVKQILLPAHGGGVDLVLLMMQLGKRQINSV 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346 E G A+A + ++ LVD +ILY + V+G L + F Sbjct: 299 WAECGPALAGALLSLGLVDELILYIAPKVLGNSARGLFDIPELHKLSDAPEFTLFDVKQI 358 Query: 347 GSDVCLEYIG 356 G D+ L Sbjct: 359 GPDIRLRLRP 368 >gi|262376969|ref|ZP_06070195.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145] gi|262308007|gb|EEY89144.1| riboflavin biosynthesis protein RibD [Acinetobacter lwoffii SH145] Length = 362 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 191/366 (52%), Gaps = 19/366 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M A+ +R T NP+V C+IVKDGIVIG G G PHAEV AL Sbjct: 1 MVELNQDQVWMRRAIELARQGQYSTKPNPNVGCVIVKDGIVIGEGFHPQAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE+ARGATAYVTLEPC+HYGR+PPCA+ ++E G+ +VVV DP+ V+G+G+Q L Sbjct: 61 RQAGEQARGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 I + + E E +L ++ LKIA S D MA S ITG + Sbjct: 121 DAEIEVEIGICEDEAHQLNQGFLKAMATGMPYMRLKIASSLDGRTAMASGESKWITGLAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDS 234 + V RA S A++ GI TVLADD EL R L+GL++ P RIILD +L L++ Sbjct: 181 RQDVQHWRAISGAVITGIDTVLADDCELNVRQLDGLEDIKTVVQPKRIILDRQGRLPLNA 240 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293 KI+ + ++V ++ +++ + L +LL LV + +LVE Sbjct: 241 KIL---VQPETVMVMG------PFRQELADLGVLHLPVQPLAELLKQLVQQHQIYDVLVE 291 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 GA ++ +F+ +LVD +I Y + ++G+ + + F G DV Sbjct: 292 AGATLSTAFLQQKLVDELISYVAPTLLGQSARTMFNAEFSHMAEQLRFKLRDVTRLGDDV 351 Query: 351 CLEYIG 356 I Sbjct: 352 RFRLIP 357 >gi|37520819|ref|NP_924196.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421] gi|35211814|dbj|BAC89191.1| riboflavin biosynthesis protein [Gloeobacter violaceus PCC 7421] Length = 366 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 108/361 (29%), Positives = 175/361 (48%), Gaps = 8/361 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V+ D +M L + G T+ NP V ++V DG+ +G G G PHAE AL Sbjct: 2 VAVSDEDWMERCLALAEQAWGRTTPNPLVGAVVVNDGLAVGEGFHPKAGAPHAEAFALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGAT YV LEPC+H+GR+PPC + I+ G++RVV+ + DP+ VSGRGL+ L Sbjct: 62 AGDLARGATLYVNLEPCNHHGRTPPCTEAIVAAGLQRVVIGMVDPNPIVSGRGLERLRTA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ + A+ R LK A++ D S I+G ++ Sbjct: 122 GIEVSVGVLSDRCERLNEAFSHFMRTGRPFGVLKYAMTLDGKTATRTGHSFWISGQAARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 + H LRA +DA++VG TV DDP+LT RL + +P+R++L L ++++ Sbjct: 182 RTHRLRAFADAVIVGGNTVRLDDPQLTVRL--AEGRNPLRVVLSRTLALPAEARLWLDQT 239 Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +P ++ T DP + + + + D +L L S+L E G +A Sbjct: 240 PSPTLVFTGAQGDPQMRSHLERLGVEVQVLDELTPAAVLEKLASYPCVSVLWECGGTLAW 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 S + V +I + + ++G +P+ K +R + V E +G++ Sbjct: 300 SALTDGSVQKVICFVAPCLVGGAQAYTPVAGEGFAKMHAAMRLER----VHAEPVGEDWM 355 Query: 361 L 361 Sbjct: 356 W 356 >gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes HOxBLS] gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes HOxBLS] Length = 374 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 112/358 (31%), Positives = 189/358 (52%), Gaps = 19/358 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM AL +R L S NP V C+IV++G ++G G T G HAE++AL EA G Sbjct: 17 EFFMKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSRG 76 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ RGAT YVTLEPC+H+GR+PPCA ++ G+ RV+ ++DP+ V+G+GL+ L GI Sbjct: 77 EDCRGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAGI 136 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++ E + +L+R R + +K+A S D ++ S IT ++ Sbjct: 137 HVICGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKAREDG 196 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R ++DAI+ GIGTV+ D+P L RL P+RI++D K LD+++++ Sbjct: 197 HRWRMRADAIMTGIGTVIQDNPRLNVRLPDA-VRQPVRIVVDSQLKTPLDARVLEEG--- 252 Query: 244 PVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I + N P A ++K + + DL +++ L + + + VE GA + Sbjct: 253 KTWIFSANASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATLN 312 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL 352 + + LVD +++Y + +G G + L ++++ + D+ G D+ + Sbjct: 313 GALMQESLVDEMLIYLAPCFLGSG--KNMLSLNHIDRLADKIALDFHEIVPIGDDIRI 368 >gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002] gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Lutiella nitroferrum 2002] Length = 364 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 140/362 (38%), Positives = 193/362 (53%), Gaps = 13/362 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D M+ ALR + + T+ NP V C++V+DG V+G G G PHAEV AL Sbjct: 1 MTFSAVDHAMMAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSHYGR+PPCA+ +IE G+ RVV + DP V+GRGL L Sbjct: 61 RMAGELARGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E+E + +L+R R +TLK A S D + S ITG + Sbjct: 121 AAGIEVAVGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA+S AIL G GTVLADDP+LT R P R+++D + S ++I + Sbjct: 181 RRDVHRLRARSCAILTGSGTVLADDPQLTVREV-FTPRQPRRVVVDSRLQTSPGARIYRD 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 I+ T D + ++ + + DL LL L GV L+VE G Sbjct: 240 G---ETILATAVADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVR-RDYFGSDVC 351 A + + + + LVD I+LY + ++G+ P+ E K + VR G DV Sbjct: 297 AGLNGALLQAGLVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVR 356 Query: 352 LE 353 LE Sbjct: 357 LE 358 >gi|260441248|ref|ZP_05795064.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae DGI2] gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18] gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2] gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18] gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2] Length = 369 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 189/366 (51%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L DS+++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P +I T + +RK I DL +L+ +L G G ++VE G Sbjct: 240 QSPTLIATLERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351 A + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 AKLTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|258592177|emb|CBE68486.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [NC10 bacterium 'Dutch sediment'] Length = 372 Score = 346 bits (889), Expect = 2e-93, Method: Composition-based stats. Identities = 127/365 (34%), Positives = 184/365 (50%), Gaps = 12/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RFM AL + G TS NP V ++V+ G ++G G A G PHAEV ALE Sbjct: 2 FTPDDERFMRHALVLAEKGRGRTSPNPMVGAVVVQHGRIVGEGYHAQAGKPHAEVVALEY 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG AR A YVTLEPC HYGR+PPC II+ GIRRVVV DP+ VSGRG+Q L Sbjct: 62 AGGAARNADLYVTLEPCGHYGRTPPCTDRIIQAGIRRVVVPTIDPNPLVSGRGVQSLRDA 121 Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G I+ + ++ A++ + + LK AVS D I S ++G S+ Sbjct: 122 GVIVDLGLRSADATALNEAFIKFMKHRTPFVVLKAAVSLDGKIATRTGDSRWVSGERSRE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +H LR Q DA++VGIGTV D+P LT RL P+R+++D D++I++ Sbjct: 182 HIHTLRDQIDAVIVGIGTVRRDNPRLTTRLPEG-GRDPIRVVVDGLGPFPDDAQILQAEA 240 Query: 242 LAPVIIVTENDDPVLA-LAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 + + D P A ++ + ++ L+ LL L R VTS+++EGG Sbjct: 241 ASRTWVAVAADAPAKRIRALERRGLTVLEAGGFRGRVSLEHLLKRLGEREVTSVMIEGGE 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 + S I +VD +L+ + I++G PS ++ +R + G DV Sbjct: 301 GIFTSAIEEGIVDKFLLFVAPILLGGKTAPSLFGGTGIDNIGQALRLARLRIEQLGEDVL 360 Query: 352 LEYIG 356 +E Sbjct: 361 IEGYR 365 >gi|218767600|ref|YP_002342112.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis Z2491] gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis Z2491] Length = 369 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|254421232|ref|ZP_05034950.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335] gi|196188721|gb|EDX83685.1| riboflavin biosynthesis protein RibD [Synechococcus sp. PCC 7335] Length = 363 Score = 346 bits (889), Expect = 3e-93, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 170/353 (48%), Gaps = 9/353 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M + G T+ NP V +I++DG ++G G G PHAE+ AL A + Sbjct: 11 DTDLMRRCCELAAQAAGHTAPNPLVGSIILRDGEIVGEGFHPKAGEPHAEIFALRAASDR 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YV LEPC+H G +PPC++ +I+ GIRRVV+ + DP+ + + G++ L Q GI V Sbjct: 71 AQGATLYVNLEPCNHKGLTPPCSEAVIKAGIRRVVIGMRDPNPK-AKGGIEKLRQAGIEV 129 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E + A++ R LK A++ D I S I+G S+ +VH Sbjct: 130 VVGIEVDRCHQLNEAFIHRVTHNSPFGILKYAMTLDGKIATTAGHSAWISGPSSRQRVHQ 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR++ DA++VG TV D+P LT G +P+R+++ H L D + KT + + Sbjct: 190 LRSRCDAVIVGGNTVRQDNPNLTSHGEGT--RNPLRVVMSRHLDLPSDRNLWKTEVAPTL 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + N + A ++ + I+ + ++ L RG S+L E G +A I + Sbjct: 248 VFTQTNANLETKAALVRQGVEIVALESLTPAAVMAHLYQRGAMSVLWECGGVLAAKAIAA 307 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 V I + + +IG PSP+ E V G D L+ Sbjct: 308 GSVQKIWAFIAPKLIGGQRAPSPIGELGFTAMTEALALHSVSITPVGQDFLLK 360 >gi|58583479|ref|YP_202495.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae PXO99A] gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae PXO99A] Length = 369 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 185/357 (51%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTVLADDP +T RL + P+R++LD + I Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLRTLACKNIRNGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + + AL + ++ DL +L +L RG+ + VE GA ++ + Sbjct: 248 -APTLYLHGDAVAATALDGAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P G G D+ L Y Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLRY 363 >gi|13476938|ref|NP_108508.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti MAFF303099] gi|14027701|dbj|BAB54294.1| riboflavin-specific deaminase / reductase [Mesorhizobium loti MAFF303099] Length = 376 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 168/365 (46%), Positives = 226/365 (61%), Gaps = 10/365 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 ++ D RFM+AALR SR + G TSTNPSV +IV+D +++G GVTA GG PHAE + Sbjct: 11 QTALDRRFMAAALRLSRRNAGRTSTNPSVGTIIVRDDGAGPMIVGTGVTAVGGRPHAETE 70 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAGE ARGATAYVTLEPC+H+GR+PPCA ++ GI RVV DPD RVSG+G Sbjct: 71 ALAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGIARVVGAASDPDPRVSGKGYAI 130 Query: 119 LSQKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI+V ++++ +E + YL R + KR +TLK+A+S D IG G G V ITG Sbjct: 131 LRAAGIVVVEKVLATEAAEQMAGYLIRSLRKRPEVTLKLALSSDGKIGRKGAGQVAITGE 190 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 I++ V+L+RA+SDAIL+GIGT L DDP LT RL GL+ SP RIILD +L SK++ Sbjct: 191 IARRDVYLMRAESDAILIGIGTALEDDPALTVRLPGLENRSPARIILDRQIRLPEASKLV 250 Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 P+ + DP A + + I + D L +LL L G+ S+LV Sbjct: 251 SGVDRVPLYVAACLEADPHRRSALERAGVRFIGTETHDGVVALPELLEDLAALGMASVLV 310 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGGA VA +F++ LVD I+L++ IGE GI SP++ ++ F +R FG D Sbjct: 311 EGGAQVAKAFLDEDLVDRIVLFQGPEAIGEDGIASPVDADHIPAGFRKLREMRFGEDSYA 370 Query: 353 EYIGK 357 E++ Sbjct: 371 EWVRD 375 >gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans DMS010] gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans DMS010] Length = 368 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 180/364 (49%), Gaps = 19/364 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM+ A++ + + T NP V C+IVK+ +IG G G HAEV A++ AG A Sbjct: 5 EHFMARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAIQAAGHAA 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GA YVTLEPCSH+GR+PPC +I ++RV V + DP+ VSG G+ L Q G+ V Sbjct: 65 EGADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVH 124 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ ++ + + R + I K+A+S D MA S ITG ++ V L Sbjct: 125 TDILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLN---------GLQEHSPMRIILDPHFKLSLDSKII 237 RA+S AI+ GIGTVLADDP L R G + P+R+++D ++ +++I+ Sbjct: 185 RARSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARIL 244 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + V++ T D A + + D DL L+++L R V L+VE G Sbjct: 245 QEKR---VLLATAQD--KKAPNGAESIVLPEDGDIIDLTALMSVLAQREVNELMVEAGGV 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353 + + + +RL+D +++Y + ++G+ G + G D + Sbjct: 300 LNGAMLKARLIDELVIYMAPKIMGDMARGVFHLPGMETMAQNISLNITDMRPIGKDWRIT 359 Query: 354 YIGK 357 I + Sbjct: 360 AIPE 363 >gi|21230168|ref|NP_636085.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66769842|ref|YP_244604.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. 8004] gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. campestris str. B100] gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase [Xanthomonas campestris pv. campestris str. 8004] gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. campestris] Length = 364 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 186/360 (51%), Gaps = 8/360 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M VS+ + R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL Sbjct: 1 MSVSADNHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE+ARGATAYVTLEPC+HYGR+PPCA +I G+ RVV + DP +V+G G L Sbjct: 61 RAAGEQARGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +ME++ + +L+R R + +K+ S D MA S ITG + Sbjct: 121 DAGIQVHSGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + V RA++ IL G GTVLADDP +T RL P+R++LD + + I + Sbjct: 181 RADVQRWRARAGVILTGAGTVLADDPSMTVRLGEDTPCVPPLRVVLDAGLRTLACANIRQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + D A + ++ DL +L L RG+ + VE GA + Sbjct: 241 GD--APTLYLHGADVTAPAFDGAEFAAMPLHAGRFDLAAVLASLAERGINEVHVEAGATL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354 + + + + LVD +++Y + +++GE P G + + G D+ L Y Sbjct: 299 SGALLQAGLVDELLVYMAPVLLGETARPLLAGLGIDTMAQRHALQLLDVRHIGQDLRLRY 358 >gi|189500554|ref|YP_001960024.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides BS1] gi|189495995|gb|ACE04543.1| riboflavin biosynthesis protein RibD [Chlorobium phaeobacteroides BS1] Length = 371 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 178/357 (49%), Gaps = 13/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65 R+MS L + G S NP V L+V DG +IG G G PHAEV A+ E Sbjct: 13 ERYMSRCLELAGKGAGYVSPNPMVGSLLVLDGQIIGEGYHERYGGPHAEVNAIASVKDSE 72 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + R +T YV LEPCSH+G++PPC+ II+ I RVVV DP V+GRG+Q L G+ Sbjct: 73 QLRESTLYVNLEPCSHHGKTPPCSDLIIQKNIPRVVVACRDPHRMVAGRGIQKLLDAGVE 132 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ ++E A++ V+ ++LK+ + D I S ITG +++ VH Sbjct: 133 VIEGVLEERSLKLNEAFMKSHVKNIPFVSLKLGQTLDGKIATVNGLSKWITGQPARDHVH 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR++ DA++ G GT++ADDP LT R L +P+R++LD +L + Sbjct: 193 FLRSRYDAVMTGSGTIVADDPLLTVR--HLPGRNPLRVVLDRRLQLPETMNVYNGEAATI 250 Query: 245 VIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + + K + ++ DL ++L +L GV S+ VE G+ ++ Sbjct: 251 VFTSDAGETTGRRERLQDKGVEVVSVTERNGRLDLDEVLHVLHANGVLSVFVEAGSRLSG 310 Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 S + S LVD I LY + + G G P ++ + +FG+D+ LE Sbjct: 311 SLLQSGLVDKIYLYVAPKIFGGDGLDSFAPLGVDSPQGAISLRFESPVFFGNDLLLE 367 >gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis OX99.30304] Length = 369 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 187/367 (50%), Gaps = 13/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGKN 358 + + Sbjct: 360 TVFRKND 366 >gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M13399] Length = 369 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 130/365 (35%), Positives = 188/365 (51%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I V+G+G G PHAEV AL + Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P +M V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWMPVSTEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|207728168|ref|YP_002256562.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum MolK2] gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum MolK2] Length = 370 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 179/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A + +I DL +L L R + L VE Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus ATCC 19194] gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus ATCC 19194] Length = 366 Score = 346 bits (888), Expect = 3e-93, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 194/366 (53%), Gaps = 22/366 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A Sbjct: 13 QYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQAGENA 72 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT YVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+ Sbjct: 73 KDATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVE 132 Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +E L+ +L ++ LKIA S D MA S ITG +++ V Sbjct: 133 TGVCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHW 192 Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEH---SPMRIILDPHFKLSLDSKIIKTALL 242 RA S A++ GI TVLADD EL R L G+ + P RIILD +L L +KI+K Sbjct: 193 RAISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILKNPE- 251 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301 V+++T ++ +I + L +LL L + + +LVE GA ++ + Sbjct: 252 -TVMVMT-------PFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTA 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+ LVD +I Y + ++G+ + + ++ F V G D+ L + Sbjct: 304 FLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP-- 361 Query: 359 LCLQEL 364 +QE+ Sbjct: 362 --IQEM 365 >gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum UW551] gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum IPO1609] Length = 370 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 179/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSALDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A K +I DL +L L R + L VE Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum PSI07] gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum PSI07] Length = 370 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 180/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA ++E G+ RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILVDSGLDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 AP +I + A K +I DL +L L R + L VE Sbjct: 241 ADDHHAPTLIFAARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDISRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans ES-2] gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans ES-2] Length = 366 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 14/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS+ D+R+M+ AL+ + + TS NP V C++V+DG ++G G G PHAEV AL + Sbjct: 2 VSAEDSRWMAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLD 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GATAYVTLEPCSHYGR+PPC +I G+ RVVV + DP+ +V+GRG+ L Sbjct: 62 AGDAAHGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME+ + + R + K+ +S D ++ S ITG ++ Sbjct: 122 GISVDCGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARL 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA+S A+L GI T+LADD +L R + E P R++LD H ++ LD++I++ Sbjct: 182 DVQHWRARSCAVLTGINTILADDAQLNVREIDV-ERQPKRVVLDSHLRMPLDARILQGG- 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAA 297 V+I D ++ ++ DL ++ L RG +LVE GA Sbjct: 240 ---VLIYAALRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAV 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKN--FMCVRRDYFGSDVCLE 353 + + + + LVD ++LY S ++G GI + E L++ G D+ + Sbjct: 297 LNGALLRAELVDEMLLYISPQLLGSSARGIAALGELTALDQRVDLKWQDVRQVGRDLRIT 356 Query: 354 YIGKN 358 +N Sbjct: 357 VTVRN 361 >gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. lachrymans str. M301315] Length = 378 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 185/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL+KL+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD ++ + +G P PL + V+ Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568] Length = 369 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 186/367 (50%), Gaps = 13/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGKN 358 + + Sbjct: 360 TVFRKND 366 >gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. oryzae str. 1_6] Length = 381 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 8 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQ 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++E G+ RVV + DP+ VSGRGL L Sbjct: 68 AGELARGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + +L R R +I +K+A+S D MA S ITG +++ Sbjct: 128 GIGVQCGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARS 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVL D LT R L P+R+++D ++ Sbjct: 188 AVQRLRAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVP 247 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL+KL+ L RGV Sbjct: 248 LDAPFFQAGNA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRKLMGELGARGVN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD ++ + +G P PL + V Sbjct: 305 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 364 Query: 346 FGSD 349 G+D Sbjct: 365 VGND 368 >gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / phosphoribosylamino uracil reductase [Neisseria meningitidis alpha14] gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / phosphoribosylamino uracil reductase [Neisseria meningitidis alpha14] Length = 369 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 187/365 (51%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I V+G+G G PHAEV AL + Sbjct: 2 FSDTDISMMETALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L + ++ I+ DL L+ +L G+ L+VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. phaseolicola 1448A] gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. B076] gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. race 4] gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. glycinea str. race 4] Length = 378 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 LAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL+KL+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD ++ + +G P PL + V+ Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881] gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881] Length = 387 Score = 346 bits (887), Expect = 5e-93, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 188/383 (49%), Gaps = 29/383 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D +FMS AL+ +R + T NP V C++V+ G V+G G A G HAE AL Sbjct: 1 MSFSAADHQFMSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ A+GATAYVTLEPCSH GR+ PCA ++E G+ RVV ++DP+ +V+G+GLQ L+ Sbjct: 61 AAAGDRAQGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLA 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E++ + ++ R +R +I +KIA S D MA S ITG + Sbjct: 121 DAGIAVASGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------------------EHSPMR 221 + V LRA+S A++ G+GTVLAD P T R P+R Sbjct: 181 REDVQRLRARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLR 240 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKK 277 +ILD + D ++ ++V P A +++ DL++ Sbjct: 241 VILDRTLRTPPDVPVVSAPGH--CLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDLQQ 298 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGY 333 LL L R +LVE GA +A +F+ L D I++Y + ++G P L Sbjct: 299 LLIELNRRECNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARPLLGLPQLASMS 358 Query: 334 LEKNFMCVRRDYFGSDVCLEYIG 356 + G D+ L + Sbjct: 359 EKVALRWQDVRQIGDDLRLTLVP 381 >gi|325680426|ref|ZP_08159976.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8] gi|324107864|gb|EGC02130.1| riboflavin biosynthesis protein RibD [Ruminococcus albus 8] Length = 369 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 175/369 (47%), Gaps = 16/369 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM AAL + +G + NP V +IV+DG +I G G HAE A + G Sbjct: 4 EDFMQAALDSAENGMGFVNPNPMVGAVIVRDGKIIASGFHERYGSLHAERSAFAQCNKKG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 GA YVTLEPC H+G+ PPC + I GIR V + DP+ VSG+G +L +GI Sbjct: 64 INCAGADMYVTLEPCCHHGKQPPCTEAIAAHGIRHVYIGSSDPNPLVSGKGAAFLRSRGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +++ + + +TLK A++ D S ITG ++ V Sbjct: 124 GVTEGVLKEKCDKLNEIFFKFITTGLPFVTLKYAMTLDGKTACYTGESKWITGETARRHV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + AI+ GIGTVLADDP LTCR+ P+R+I D H ++ LDS I++TA Sbjct: 184 HRERLRHAAIMAGIGTVLADDPLLTCRIE--NGRDPLRMICDTHLRIPLDSNIVRTAEKV 241 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P +IV +D A A + I+ DL L+ +L + + S+L+EGG +A Sbjct: 242 PTMIVCGEEDAQKADALKNAGCQIVCLPNGNGGTDLSALMKMLGEKKIDSVLIEGGGTLA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEY 354 S + +VD ++ Y + + G +P+ + D+ +E Sbjct: 302 WSALECSIVDKVMAYTAPKIFGGKSPFTPVGGKGAKSPAKAFMLEDTTVTALDGDILIEG 361 Query: 355 IGKNLCLQE 363 K C ++ Sbjct: 362 RVKK-CSRD 369 >gi|162447960|ref|YP_001621092.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A] gi|161986067|gb|ABX81716.1| riboflavin biosynthesis protein [Acholeplasma laidlawii PG-8A] Length = 357 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 116/355 (32%), Positives = 177/355 (49%), Gaps = 11/355 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M A + G + NP V +I+KDG VIG+G G HAEV A+ A E+ Sbjct: 8 KYMKQAFNLAIKGEGFVNPNPLVGAVIIKDGKVIGKGYHKAFGQVHAEVDAINHATEDVA 67 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT +VTLEPCSH+G+ PPCA +IE GI+ V + DP+ V +G++ L GI V Sbjct: 68 GATMFVTLEPCSHHGKQPPCAFKLIEKGIKEVYIANLDPNPLVYKQGVKVLEDAGIKVHY 127 Query: 129 MMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + G + KR + +K A++ D + S IT S+ VH LR Sbjct: 128 GILDDLGLKVNDIFFHYITTKRPFVAMKYAMTLDGKLATKDFDSKWITNKKSRKYVHDLR 187 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + AILVG+ T++ DD +L R + + +P+RIILDP + + ++KTA P I Sbjct: 188 NKYSAILVGVNTIIKDDAKLDVRRS-KKSKNPVRIILDPKLQTPKSTYVVKTAKTQPTWI 246 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 V+E D ++ + II DL KL+TIL + S+ +EGGA SF+ + L Sbjct: 247 VSETYD----QSYVDLGVKIIQMPTIDLDKLMTILGEAKIDSIFIEGGAYTHASFLEANL 302 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 V+ + + + +IG +P+ + V F D+ +E K Sbjct: 303 VNKVYAFIAPKIIGGKNALTPIGGEGVSLMKDAHVLKDVTYTQFDEDILIEGYFK 357 >gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1] gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23] gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1] gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23] gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp. fastidiosa GB514] Length = 364 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV AL Sbjct: 4 FSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L Sbjct: 64 AGDRARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + K+ Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRD- 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + L + DL+ +L +L RG+ + VE GA + Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 + +++ LVD +++Y + +++G+ P + L+ G +++ + G+D+ L Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358 >gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) [Neisseria meningitidis WUE 2594] Length = 369 Score = 345 bits (886), Expect = 5e-93, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 184/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I V+G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CFBP2957] gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CFBP2957] Length = 370 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 179/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D +IG G T G HAE+QA+++ Sbjct: 2 FSDFDHVMMQRALALAENGLFTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARNDGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILS 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A + +I DL +L L R + L VE Sbjct: 241 ADDHREPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92] gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92] Length = 379 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 196/367 (53%), Gaps = 19/367 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D R+M+ A+ ++ + T+ NP V C++VKD +++G G G HAEV A+ + Sbjct: 5 WSIADHRYMARAIVLAKQGLYTTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEVNAMAQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ +V+GRG+Q L Sbjct: 65 AGDLAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++E+E + ++ R ++LKIA S D MA S ITG +++ Sbjct: 125 GISAESGLLEAEARALNPGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLD 233 V LRA+S AIL G+ ++L D+ LT R L + P+R++LD + + +D Sbjct: 185 DVQKLRARSSAILTGVESILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPID 244 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTIL-VGRGVT 288 + I+ +I T + D V+ + +I DL LL L Sbjct: 245 ASILSQP--GRTLIATISKDAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCN 302 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDY 345 LLVE GA +A +FI+++LVD + LY + ++G P+ PL + + + Sbjct: 303 ELLVETGATLAGAFIDAKLVDQLHLYMAMTLMGSSARPAFQLPLAKMSEQVRLKRMDMRM 362 Query: 346 FGSDVCL 352 G D+ L Sbjct: 363 LGDDMKL 369 >gi|312898694|ref|ZP_07758084.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis F0359] gi|310620613|gb|EFQ04183.1| riboflavin biosynthesis protein RibD [Megasphaera micronuciformis F0359] Length = 371 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 173/319 (54%), Gaps = 9/319 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G TS NP+V C+IVKDG ++GRG G PHAEV AL EA E+A+GA Sbjct: 1 MEEALNLARMGLGYTSPNPTVGCVIVKDGEIVGRGYHHQAGTPHAEVWALREAKEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+HYG++PPCA+ +++ G+ +VV + DP+ V+G+G L GI ++ + Sbjct: 61 TVYVTLEPCAHYGKTPPCARALVKAGVAKVVCAMLDPNPLVAGKGAAILRNAGIPVIVGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M E ++ + + I +K+A S D S IT ++ + H LR+ Sbjct: 121 MSKEAVKMNEVFIKNMIVHKPFIAVKLAQSLDGCTASRTGKSKWITNDTARQEGHYLRSL 180 Query: 190 SDAILVGIGTVLADDPEL---TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 DAILVGI TV +D+P L T R + P RIILD ++ L + ++ +I Sbjct: 181 YDAILVGINTVESDNPLLTSRTTRPGHERPKQPTRIILDSTGRIDLQALLVTDKQSPTII 240 Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + TE A + +I DL L+ L +G+ S+L+EGG+ V S Sbjct: 241 VTTERCPESKRQALNTAGVEVIVAAADDEGRIDLNGLMDTLYKKGICSILIEGGSTVIGS 300 Query: 302 FINSRLVDSIILYRSQIVI 320 F + LVD + ++ I++ Sbjct: 301 FFDENLVDKLYVFTGHIIM 319 >gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Ralstonia solanacearum CMR15] Length = 370 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 178/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 Q GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 RQAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A + +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase) and 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Neisseria meningitidis 8013] Length = 369 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 186/366 (50%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL+ + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSETDISMMQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|262274779|ref|ZP_06052590.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Grimontia hollisae CIP 101886] gi|262221342|gb|EEY72656.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Grimontia hollisae CIP 101886] Length = 373 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 187/372 (50%), Gaps = 26/372 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD++ M A+ ++ + T+ NP+V C+I + ++G G G PHAEV AL Sbjct: 2 FSIFDSQMMLRAIELAKRGIYTTAPNPNVGCVITQGDDIVGEGFHFRAGEPHAEVYALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSH+GR+PPCA +I G+ RVV + DP+ +V+GRG+Q + Sbjct: 62 AGEKACGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVCAMVDPNPKVAGRGIQRMRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +M+++ + ++ + LK+A S D +A S ITG ++ Sbjct: 122 GIQVDVGLMQAQAEALNPGFIKVMKTGLPFVQLKLASSIDGRTALANGQSQWITGAEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V + RAQ+ AIL TVL D+P L R L E P+R+ILD H K+ Sbjct: 182 DVQVFRAQAGAILSTSQTVLDDNPSLNVRWAQLPETVKSVYQQDDVRQPVRVILDTHRKV 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRG 286 S + + +IIVT DD +++ ++ + +D L L L +G Sbjct: 242 SDSATLFSLDGD--IIIVTAKDDK----PSVNESVTVLTVEQQDGHLNLNSTLRALAAKG 295 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVR 342 + + VE GA +A S +N+ LVD +I+Y++ ++G EG F Sbjct: 296 IHHIWVEAGATLAGSLLNAGLVDEVIVYQAPKLMGSDSRGLVKLEGLTSMSQVPTFTLTD 355 Query: 343 RDYFGSDVCLEY 354 G DV Sbjct: 356 VTRIGDDVRFRM 367 >gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium 1_1_47] gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium 1_1_47] Length = 363 Score = 345 bits (885), Expect = 7e-93, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 182/362 (50%), Gaps = 17/362 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D +M AL ++ NP+V C+IVKD +IG G T G HAEV AL + Sbjct: 1 MSFSDCSYMRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRD 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A GE GAT YVTLEPCSHYGR+PPCA + + RVV + DP+ V+G+GL+ L Sbjct: 61 AASRGESVEGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + G+ + + E + +L RQ E + K+A+S D +A S IT Sbjct: 121 EEAGVKVECGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEE 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H R S A+L G+GTVLAD+P++T R G+ P+++++D + L+ D KI + Sbjct: 181 ARADGHFWRGISGAVLTGLGTVLADNPQMTARFEGVT-RQPLKVVVDSNLSLNPDLKIFQ 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 ++V D V A F + + +I + DL+ L+ L R + + VE Sbjct: 240 GG---KTLLVCARYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEA 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350 GA + + L+D ++Y + + +G+G +PS ++ G DV Sbjct: 297 GARLNGALAMEGLIDEYLIYVAPVFLGDGRRLLDLPS-FKDLCEGVALEFTDIQKVGPDV 355 Query: 351 CL 352 L Sbjct: 356 RL 357 >gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas mendocina NK-01] gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas mendocina NK-01] Length = 371 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 182/369 (49%), Gaps = 14/369 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D FM+ ALR +R + T NP V C+IV+DG ++G G A G PHAEV AL + Sbjct: 1 MSEHDQLFMARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ +V+G GL L Sbjct: 61 AGDKARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + ++ R + +K A+S D MA S ITG ++ Sbjct: 121 GIEVRSGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 +V LRAQS +L G TVLADD LT R + L Q P+R+++D ++ Sbjct: 181 EVQRLRAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + + + DL+KLL L GRGV +L Sbjct: 241 VSKAFFQVGPALVATCAAAAARDRYLADGHELLAVPGSNGHVDLRKLLLELAGRGVNEVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348 VE G +A +F + LVD ++ + ++G P PL + G Sbjct: 301 VEAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARPLLDLPLNRMAEAPELQILDIRAVGD 360 Query: 349 DVCLEYIGK 357 D + + K Sbjct: 361 DWQITALPK 369 >gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia solanacearum GMI1000] gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Ralstonia solanacearum GMI1000] Length = 370 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 178/362 (49%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + T+ NP V C++V+D VIG G T G HAE+QA+++ Sbjct: 2 FSDFDHAMMQRALALAENGLFTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA ++E GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AQARGHDVRGATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + +++R + +K+ S D + S IT Sbjct: 122 REAGIDVRCGLLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAE 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D + LD+ I+ Sbjct: 182 ARADGHRWRARACAILTGIGTVREDNPRLTVR-AIPTPRQPRRILIDSGLDVPLDAHILT 240 Query: 239 -TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVE 293 P +I + A + +I DL +L L R + L VE Sbjct: 241 ADGHHEPTLIFAARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD I++Y + V+G G PL+ F G D+ Sbjct: 301 AGYKLNGSLLREGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|86605105|ref|YP_473868.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab] gi|86553647|gb|ABC98605.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-3-3Ab] Length = 371 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 110/363 (30%), Positives = 182/363 (50%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M L +R S NP VAC+IV+ V+G GV G PHAEV AL++AG Sbjct: 4 DADRQWMERCLSLARSTPQRPSPNPRVACVIVRGDQVVGEGVHLGAGQPHAEVLALQQAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L + G+ Sbjct: 64 SLAKGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + + V+KR LK A++ D A S I+ +++ V Sbjct: 124 EVTVGVLEQECQELNEGFAFAIVQKRCFGLLKYAMTLDGKSAAATGHSRWISNPLAREWV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA DA++VG GTV D+P LTCRL P+R++L L + + + Sbjct: 184 HRQRAWHDAVIVGSGTVWHDNPHLTCRLPDFHGSQPLRVVLSRSLNLPPLAHLWRAEEAP 243 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++I + L + K+ + +++ D + +L RG S L E G +A + + Sbjct: 244 TLVITEATEAHPLWGSLAKQGVELLHLDQVTPAQAAQVLFERGCLSALWECGGTLAWAAL 303 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGKNLC 360 + + + + ++G P+P+ + +++ + L+ +G N Sbjct: 304 KDGAIQKVAAFIAPKILGGADAPTPVAGEGIPDVNQSWQLLEPQ-------LQTVGDNWL 356 Query: 361 LQE 363 + Sbjct: 357 ITG 359 >gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7] Length = 378 Score = 344 bits (884), Expect = 9e-93, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 184/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL++L+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + V Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M04-240196] Length = 369 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 185/366 (50%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G L E + V + G D+ Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aesculi str. 2250] Length = 378 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 185/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL+KL+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD ++ + +G P PL + V+ Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48] gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48] Length = 375 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 122/358 (34%), Positives = 179/358 (50%), Gaps = 16/358 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ A+ +R + T NP V C+IV+DG V+G G G PHAEV AL +AGE Sbjct: 7 LDAHYMARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQAGE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L + GI Sbjct: 67 LARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIE 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + K+A+S D MA S ITG ++ V Sbjct: 127 VASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQ 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L +VL D+ +T R L P+R+++D +L LD+ Sbjct: 187 RLRARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDA 246 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + +++ DDP A A + D DL LL L RGV +L+E Sbjct: 247 PFFQAGPA--LVVTAAGDDPRYAAAGHELLNLPGDDDQVDLPALLRCLAERGVNEILLEA 304 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 GA + +F LVD L+ + +G P PL + G D Sbjct: 305 GAGLVGAFARQGLVDEFQLFVAGTFLGSEARPLLDWPLSKMSEAPRLKITEMRAVGDD 362 >gi|294852128|ref|ZP_06792801.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026] gi|294820717|gb|EFG37716.1| riboflavin biosynthesis protein RibD [Brucella sp. NVSL 07-0026] Length = 373 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 169/358 (47%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E Y+ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETYIASEFKILRRMRYADDACAEYVRN 372 >gi|27380142|ref|NP_771671.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] gi|27353296|dbj|BAC50296.1| riboflavin biosynthesis protein [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 154/363 (42%), Positives = 211/363 (58%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D RFM AL R G T NP+V +IVKDG+++GRG T GG PH E +AL AG Sbjct: 19 DADRRFMQLALALGRRGQGRTWPNPAVGAVIVKDGVIVGRGWTQPGGRPHGEPEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+G+SPPCA +I GI+RVV ++DP+ V+G+G L GI Sbjct: 79 EAARGATLYVTLEPCSHFGKSPPCADAVIAAGIKRVVAAIEDPNPEVAGQGHARLRAAGI 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +E + R ++R H+ LK+AVS D IG AG V ITG +N+V Sbjct: 139 TVDVGLCAAEAAFDHAGHFRRIRDRRPHVILKLAVSPDGKIGAAGGKPVAITGEAVRNRV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQSDAILVGIGTVLADDP LTCRL G+ SP+R++LD ++S S+++++A Sbjct: 199 HLLRAQSDAILVGIGTVLADDPLLTCRLPGMAARSPVRVVLDQSLRMSAASQLVRSARET 258 Query: 244 PVIIV-TENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAA 297 P+ +V +E + A II DL +L +L +G++ L+VEGG+ Sbjct: 259 PLWVVGSELAEAAAATRLGAAGAQIIRVPPGNASGLDLPAVLHVLAEKGISRLMVEGGSR 318 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353 VA SF+ + LVD I L+R +G G+ + PL + + + + F D Sbjct: 319 VAASFVAADLVDEIWLFRGAEEVGSSGVDALDALPLSKITQSQAYKVHASETFDKDTLTI 378 Query: 354 YIG 356 Y Sbjct: 379 YER 381 >gi|149202273|ref|ZP_01879246.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035] gi|149144371|gb|EDM32402.1| riboflavin biosynthesis protein RibD [Roseovarius sp. TM1035] Length = 364 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 139/362 (38%), Positives = 200/362 (55%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ DARFM+ AL R +G + NP+V C+IV+ G ++GRG T+ GG PHAE QAL + Sbjct: 1 MTGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGGRIVGRGWTSPGGRPHAEPQALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYV+LEPC+H+G++PPCA+ +I GI RVV DD D RV+GRG L Sbjct: 61 AGELARGATAYVSLEPCAHHGQTPPCAEALIAAGIARVVAPFDDNDPRVAGRGFAMLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +M + L +L R R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVRTGVMAEQAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG GT ADDP+LT R G + P+R+++ L L S + +TA Sbjct: 181 VVHGLRARHDAVMVGAGTARADDPQLTVRDMGAR-RQPVRVVVSRRLDLPLLSNLARTAR 239 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 P+ + DP L A++ ++ C+ D +L L G+T + EGG Sbjct: 240 DVPLWLCHGPHVDPALVKAWQGIGARLLPCEVTQGQVDPASVLHALGAEGLTRVFCEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 A+A S +++ LVD ++ + + IG G+P L + + V G DV Sbjct: 300 ALAASLLSAGLVDELVGFTAGFAIGAEGLPGVGALGLARLDEAQRYRLVETRALGGDVMH 359 Query: 353 EY 354 + Sbjct: 360 RW 361 >gi|146341344|ref|YP_001206392.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS278] gi|146194150|emb|CAL78171.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Bradyrhizobium sp. ORS278] Length = 383 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 146/366 (39%), Positives = 204/366 (55%), Gaps = 12/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL Sbjct: 17 QKDADRRFMQLALTLGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRR 76 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GAT YVTLEPCSH+G+SPPCA +I GI RVV V+DP+ V+ +G L Sbjct: 77 AGEAAKGATLYVTLEPCSHFGKSPPCADAVIAAGISRVVSAVEDPNPEVAAQGHAKLRAA 136 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ K + R + R + LK+AVS D+ I AG V ITG ++ Sbjct: 137 GIQVEVGLCSADAKRDHAGHFRRIRDGRPQVILKLAVSADDKIAAAGSKPVAITGEAART 196 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VHLLRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L S++I++A Sbjct: 197 RVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEPRSPVRVVLDPMLRLPSASRLIQSAR 256 Query: 242 LAPVI-IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEG 294 P+ + +E +P A +I + + +L L +G+T L++EG Sbjct: 257 TTPLWLVASEVAEPATATRLGAAGAQVIRVPPQADPSALEPPAVLKALAEKGITRLMIEG 316 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 G+ VA SF+ S LVD I L R IG GI + PL + + D+ Sbjct: 317 GSRVASSFMQSGLVDEIWLLRGPREIGADGIAALDALPLTAITQSPAYRVRASETLDPDI 376 Query: 351 CLEYIG 356 Y Sbjct: 377 LTIYER 382 >gi|49475527|ref|YP_033568.1| riboflavin biosynthesis protein ribD [Bartonella henselae str. Houston-1] gi|49238333|emb|CAF27557.1| Riboflavin biosynthesis protein ribD [Bartonella henselae str. Houston-1] Length = 365 Score = 344 bits (883), Expect = 1e-92, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 224/366 (61%), Gaps = 13/366 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65 M+AA+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG Sbjct: 1 MAAAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI Sbjct: 61 LAHGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ ++ E L Y + ++R +TLK+A+S DN +G G G + I+G S Q H Sbjct: 121 VIEGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +LRAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P Sbjct: 181 ILRAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIP 240 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 ++ + +A + +++ + + +L +L RG+ S+L+EGG Sbjct: 241 TWVICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKT 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K Sbjct: 301 GEIFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKT 359 Query: 359 LCLQEL 364 LC QEL Sbjct: 360 LCSQEL 365 >gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 961-5945] Length = 369 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G L E + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|166710620|ref|ZP_02241827.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 369 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 182/357 (50%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 129 IEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTVLADDP +T RL P+R++LD + I Sbjct: 189 VQRWRARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLRTLACKNIRNGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + + AL ++ DL +L +L R + + VE GA ++ + Sbjct: 248 -APTLYLHGDAVAATALDGAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P G G D+ L Y Sbjct: 307 LLQAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRLHY 363 >gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396] gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396] Length = 362 Score = 344 bits (882), Expect = 1e-92, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 188/363 (51%), Gaps = 17/363 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C++VK+G+++G G G HAEV AL AGE ARGA Sbjct: 1 MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALRAAGESARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPCSHYGR+PPCA+ +++ G+RRV+ ++DP+ V+G+GL L G+ + Sbjct: 61 DCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESEVGC 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M +E + R + R + +K+A S D + S ITG ++ V LRA+ Sbjct: 121 MAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE------HSPMRIILDPHFKLSLDSKIIKTALLA 243 S A++ GIGT++AD+P L R L++ PMR+ LD + DS ++K Sbjct: 181 SSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLKLPGKI 240 Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 ++ T+ + LA ++ ++ DLK LL+ L R +LVE GA + Sbjct: 241 LLVACTDPSEGWLAQRQSSGADLEVLKLAGENGRIDLKALLSTLAARECNEVLVEAGANL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 A +F+ L D I Y + ++GE G P+ + Y + + G DV + + Sbjct: 301 AGAFVAQGLADEIWTYTAPKLMGE-GRPAFVLPRYEQMDQVITLKLNDVRQVGDDVRMIW 359 Query: 355 IGK 357 + Sbjct: 360 RKE 362 >gi|256113297|ref|ZP_05454165.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] gi|265994710|ref|ZP_06107267.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] gi|262765823|gb|EEZ11612.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 3 str. Ether] Length = 373 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLKQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++ S +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFLSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|115377134|ref|ZP_01464348.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|310822848|ref|YP_003955206.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|115365843|gb|EAU64864.1| riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] gi|309395920|gb|ADO73379.1| Riboflavin biosynthesis protein RibD [Stigmatella aurantiaca DW4/3-1] Length = 387 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 188/362 (51%), Gaps = 11/362 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + +G TS NP+V ++VK G +I RG G HAEV ALE AG A Sbjct: 29 EFFMRIALEEAAKGLGRTSPNPAVGAVLVKGGRIIARGYHKKAGTAHAEVVALEAAGPRA 88 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGA Y TLEPC HYGR+ PC+Q II+ G+RRV+ DP+ +V+G+G+ L + G+ ++ Sbjct: 89 RGADLYTTLEPCDHYGRTGPCSQAIIDAGVRRVICGSSDPNPKVNGKGVARLKKAGVEVL 148 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ + + ++TLK AV+ D + A S +TG +++ VH L Sbjct: 149 TGVLQKDADQLNQPFFKVMTTGLPYVTLKAAVTLDGKLATATGDSRWVTGEAARHWVHQL 208 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + D ILVG TV D+P+LT RL G P+R+++D H +L + A VI Sbjct: 209 RDKVDVILVGANTVRRDNPQLTTRLPGGGGKDPVRVVVDSHLRLKSTHTVFTQRSPARVI 268 Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T E+ A F + + + R LK LL + G +LVEGGA + S Sbjct: 269 LATLEDPQGAKARRFTRLGVEVWQMPSRQGQVALKALLGRVAQEGFNHVLVEGGAEIYGS 328 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ RL DS+ L+ + +IG G+ + G + + D+ + +G++L L Sbjct: 329 FLRERLADSLALFLAPKLIGSQGLSWSGDLGV-----KLMANAFSLKDLTFQQLGEDLLL 383 Query: 362 QE 363 Q Sbjct: 384 QA 385 >gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC 33394] gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC 33394] Length = 369 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 182/363 (50%), Gaps = 12/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S DA M A+ + TS NP V C+I G ++G+G G PHAEV AL + Sbjct: 8 FSELDAAHMRRAIELAWLGRFSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALRQ 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPCSH+GR+PPCA+ +I G+ RVV+ + DP+ V+G+G+ L Sbjct: 68 AGDLARGATAYVTLEPCSHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQAA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E + +L+R +R ++LKIA S D G++ S ITG ++ Sbjct: 128 GISVQCGLLADEARALNRGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RAQS A+L G+GTVL D+P L R P+R+ILD + S +I+ Sbjct: 188 DVQRQRAQSCAVLTGVGTVLHDNPRLNVR-QFPIVRQPLRVILDSRLRTPESSHMIQDGQ 246 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAV 298 I T P L A+ ++ + L +L L G+ L+VE G + Sbjct: 247 A--TQIFTLQKQPALFAAYPNVSVRQCAANADGRIALPDVLARLAEDGIGELMVEAGCTL 304 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN--FMCVRRDYFGSDVCLE 353 +F+ L D I+ Y+S ++G + P L++N + G+D+ Sbjct: 305 NSAFLQQNLADEIVYYQSAKILGSNAQAAFSLPENPAVLQQNAEWQTADVQILGNDIKWT 364 Query: 354 YIG 356 Sbjct: 365 LRR 367 >gi|59800550|ref|YP_207262.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA 1090] gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62] gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA 1090] gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62] Length = 369 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|238911451|ref|ZP_04655288.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 367 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|302387516|ref|YP_003823338.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum WM1] gi|302198144|gb|ADL05715.1| riboflavin biosynthesis protein RibD [Clostridium saccharolyticum WM1] Length = 368 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 112/357 (31%), Positives = 182/357 (50%), Gaps = 12/357 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+R ++ GL + NP V ++VK+G +IG G G HAE A+ E Sbjct: 3 DMEYMGMAVRLAQKGCGLVNPNPMVGAVLVKEGRIIGEGYYERYGALHAERNAILNCRES 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G T YVTLEPC H+G++PPC + I++ GIRRVV+ DP+ V G+G++ L ++GI + Sbjct: 63 PEGTTLYVTLEPCCHHGKTPPCTEAILQSGIRRVVIGSHDPNPLVKGKGIKQLREQGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ +++ E + + ++ +K A++ D S ITG ++ +VH Sbjct: 123 VEDVLKEECDKLNEVFFHFIQTGKPYVVMKYAMTMDGKTAAYTGASKWITGEDARRRVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + A++VGIGTVLADDP LTCRL +P+RII D LDS+I+ TA P Sbjct: 183 DRRRYSAVMVGIGTVLADDPLLTCRLE--NGRNPLRIICDTQLHTPLDSRIVLTASKVPT 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I T + + + K I+ + DL +L+ L + S+L+EGG + S Sbjct: 241 VIATSSMEREAHQPYIKAGCRILPVSQKDGHLDLARLMAKLGEEKIDSVLLEGGGILNWS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 + + +V+ + Y + ++G +P+ + G D+ +E Sbjct: 301 ALQAGIVNKVQAYLAPKLLGGAAGKTPVAGIGVPSPEAGYFLTNSTITCLGEDILIE 357 >gi|28897453|ref|NP_797058.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|260366283|ref|ZP_05778739.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] gi|260876413|ref|ZP_05888768.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|260898684|ref|ZP_05907180.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|28805665|dbj|BAC58942.1| riboflavin-specific deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|308086936|gb|EFO36631.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|308092982|gb|EFO42677.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|308112701|gb|EFO50241.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] Length = 374 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 30/377 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L + P R+ILD K Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288 LS D K+ T +I+ +E D + DL L +V + Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD----------VCPQLDQSGKIDLTATLKAVVTQHNIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 298 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVR 357 Query: 345 YFGSDVCL--EYIGKNL 359 G D+ + + K + Sbjct: 358 MVGRDIRITATLVRKEI 374 >gi|261417867|ref|YP_003251549.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61] gi|319767321|ref|YP_004132822.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52] gi|261374324|gb|ACX77067.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC61] gi|317112187|gb|ADU94679.1| riboflavin biosynthesis protein RibD [Geobacillus sp. Y412MC52] Length = 380 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI + Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQTDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357 + V+ +I Y + +IG G P+P+ + V R + G D+ + K Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361 Query: 358 ---NLCLQEL 364 +LC L Sbjct: 362 KEESLCSLAL 371 >gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA6140] gi|240117225|ref|ZP_04731287.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID1] gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID24-1] gi|240122774|ref|ZP_04735730.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID332] gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291] gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1] gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332] gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291] gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1] gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332] Length = 369 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244] gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244] Length = 366 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 191/366 (52%), Gaps = 22/366 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M A+ +R T NP+V C+IVKDG ++G G G PHAEV AL +AGE A Sbjct: 13 KYWMQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQAGENA 72 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G++ L GI V+ Sbjct: 73 KDATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVE 132 Query: 128 RMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +E L+ +L ++ LK+A S D MA S ITG I++ V Sbjct: 133 TGVCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHW 192 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGL----QEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA S A++ GI TVLADD EL R P RIILD +L L +KI++ Sbjct: 193 RAISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKILQNPE- 251 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS 301 V+++T ++ +I + L +LL L + + +LVE GA ++ + Sbjct: 252 -TVMVMT-------PFRQELADLGVIQLSLQPLNQLLQTLSQQYQIYDVLVEAGATLSTA 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+ LVD +I Y + ++G+ + + ++ F V G D+ L + Sbjct: 304 FLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRLRLLP-- 361 Query: 359 LCLQEL 364 +QE+ Sbjct: 362 --IQEM 365 >gi|254701540|ref|ZP_05163368.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] gi|261752090|ref|ZP_05995799.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] gi|261741843|gb|EEY29769.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 5 str. 513] Length = 373 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|297529535|ref|YP_003670810.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3] gi|297252787|gb|ADI26233.1| riboflavin biosynthesis protein RibD [Geobacillus sp. C56-T3] Length = 380 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGAHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI + Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357 + V+ +I Y + +IG G P+P+ + V R + G D+ + K Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361 Query: 358 ---NLCLQEL 364 +LC L Sbjct: 362 KEESLCSLAL 371 >gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 367 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|17987472|ref|NP_540106.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. 16M] gi|256044453|ref|ZP_05447357.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. Rev.1] gi|260563804|ref|ZP_05834290.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. 16M] gi|265990874|ref|ZP_06103431.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. Rev.1] gi|17983168|gb|AAL52370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Brucella melitensis bv. 1 str. 16M] gi|260153820|gb|EEW88912.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. 16M] gi|263001658|gb|EEZ14233.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 1 str. Rev.1] Length = 373 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHITSEFKILRRMRYADDACAEYVRN 372 >gi|256159495|ref|ZP_05457263.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] gi|256254781|ref|ZP_05460317.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|261221961|ref|ZP_05936242.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|265997924|ref|ZP_06110481.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] gi|260920545|gb|EEX87198.1| riboflavin biosynthesis protein RibD [Brucella ceti B1/94] gi|262552392|gb|EEZ08382.1| riboflavin biosynthesis protein RibD [Brucella ceti M490/95/1] Length = 373 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVS +G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSRKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens SBW25] gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Pseudomonas fluorescens SBW25] Length = 369 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 123/358 (34%), Positives = 181/358 (50%), Gaps = 17/358 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV AL AG+ Sbjct: 2 LDAHYMARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALRAAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI Sbjct: 62 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ESE + +L R + + +K+A+S D MA S ITG ++ V Sbjct: 122 VRSGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA++ +L G TVLAD LT R L P+R+++D ++ L++ Sbjct: 182 RLRAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNA 241 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K P +++T + + DL+ L L RGV +LVE Sbjct: 242 PFFK---AGPALVITCVTAENQFPRGPECLVVPGVEGQVDLRSALVALAARGVNDVLVEA 298 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 G ++A +F LVD +++ + +G P PL++ G D Sbjct: 299 GPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLDKLADAPQLKITEMRAVGDD 356 >gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136] Length = 369 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 188/367 (51%), Gaps = 13/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+ +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPQLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGKN 358 + + Sbjct: 360 TVFRKND 366 >gi|313904567|ref|ZP_07837942.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6] gi|313470537|gb|EFR65864.1| riboflavin biosynthesis protein RibD [Eubacterium cellulosolvens 6] Length = 367 Score = 343 bits (880), Expect = 2e-92, Method: Composition-based stats. Identities = 113/360 (31%), Positives = 169/360 (46%), Gaps = 19/360 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ +R G NP V +IV+DG +IG G G HAE A + E A GA Sbjct: 1 MRRAIELARQGEGWCHPNPMVGAVIVRDGKIIGEGYHRKCGELHAERNAFQSLRESAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPC H GR+PPC + II IR+VV+ DP+ +V G+G + L + GI +V+ Sbjct: 61 VLYVTLEPCCHVGRTPPCTEAIIGHKIRKVVIGSRDPNPKVHGKGAELLRRAGIEVVEDF 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + ++R ++ LK A++ D I S ITG ++ +V +R Sbjct: 121 LREECDALNDVFFHYITKRRPYVKLKYAMTADGKIATRTGASKWITGEEAREEVQRMRHA 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 I+VG GTV DDP L CRL G P+RII D + +S+I+++A IIV Sbjct: 181 CMGIMVGSGTVRKDDPMLNCRLPG--GRDPVRIICDSKLSIGENSQIMRSAEQQRTIIVA 238 Query: 250 ENDD-----PVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 D K + DL L+ L + S+L+EGG +A Sbjct: 239 ACRDVDAGFESRREILEKAGAEVWNLPKQAGEGVDLNLLMEKLGEIEIDSVLLEGGGILA 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEY 354 S + + +V + ++ + + G G SP+E ++ V FG D+ + Y Sbjct: 299 DSALRAGIVSEVDVFTAPKIFGGRG-KSPVEGEGVDLPSEAVMLTPKEVKMFGPDLFVRY 357 >gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 367 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|168232389|ref|ZP_02657447.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470692|ref|ZP_03076676.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194457056|gb|EDX45895.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333401|gb|EDZ20165.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 367 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSGATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPT 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|23501654|ref|NP_697781.1| riboflavin biosynthesis protein RibD [Brucella suis 1330] gi|62289719|ref|YP_221512.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str. 9-941] gi|82699648|ref|YP_414222.1| cytidine/deoxycytidylate deaminase zinc-binding subunit [Brucella melitensis biovar Abortus 2308] gi|148559719|ref|YP_001258746.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840] gi|161618734|ref|YP_001592621.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365] gi|163843038|ref|YP_001627442.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445] gi|189023968|ref|YP_001934736.1| riboflavin biosynthesis protein RibD [Brucella abortus S19] gi|225627265|ref|ZP_03785302.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo] gi|225852283|ref|YP_002732516.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC 23457] gi|237815207|ref|ZP_04594205.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A] gi|254689028|ref|ZP_05152282.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|254693511|ref|ZP_05155339.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|254697163|ref|ZP_05158991.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|254704089|ref|ZP_05165917.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|254707010|ref|ZP_05168838.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|254709881|ref|ZP_05171692.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|254713882|ref|ZP_05175693.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|254717061|ref|ZP_05178872.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|254730059|ref|ZP_05188637.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|256031374|ref|ZP_05444988.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|256257278|ref|ZP_05462814.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|256264212|ref|ZP_05466744.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2 str. 63/9] gi|260168507|ref|ZP_05755318.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|260545528|ref|ZP_05821269.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038] gi|260566663|ref|ZP_05837133.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40] gi|260754523|ref|ZP_05866871.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|260757744|ref|ZP_05870092.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|260761569|ref|ZP_05873912.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|260883551|ref|ZP_05895165.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|261213771|ref|ZP_05928052.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|261218871|ref|ZP_05933152.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|261314477|ref|ZP_05953674.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|261317423|ref|ZP_05956620.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|261321630|ref|ZP_05960827.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|261754749|ref|ZP_05998458.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|261757977|ref|ZP_06001686.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|265988460|ref|ZP_06101017.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|297248124|ref|ZP_06931842.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str. B3196] gi|23347574|gb|AAN29696.1| riboflavin biosynthesis protein RibD [Brucella suis 1330] gi|62195851|gb|AAX74151.1| RibD, riboflavin biosynthesis protein RibD [Brucella abortus bv. 1 str. 9-941] gi|82615749|emb|CAJ10745.1| Cytidine/deoxycytidylate deaminase, zinc-binding region:Bacterial bifunctional deaminase-reductase, C-terminal:Riboflavin bio [Brucella melitensis biovar Abortus 2308] gi|148370976|gb|ABQ60955.1| riboflavin biosynthesis protein RibD [Brucella ovis ATCC 25840] gi|161335545|gb|ABX61850.1| riboflavin biosynthesis protein RibD [Brucella canis ATCC 23365] gi|163673761|gb|ABY37872.1| riboflavin biosynthesis protein RibD [Brucella suis ATCC 23445] gi|189019540|gb|ACD72262.1| riboflavin biosynthesis protein RibD [Brucella abortus S19] gi|225617270|gb|EEH14315.1| riboflavin biosynthesis protein RibD [Brucella ceti str. Cudo] gi|225640648|gb|ACO00562.1| riboflavin biosynthesis protein RibD [Brucella melitensis ATCC 23457] gi|237790044|gb|EEP64254.1| riboflavin biosynthesis protein RibD [Brucella abortus str. 2308 A] gi|260096935|gb|EEW80810.1| riboflavin biosynthesis protein RibD [Brucella abortus NCTC 8038] gi|260156181|gb|EEW91261.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 4 str. 40] gi|260668062|gb|EEX55002.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 4 str. 292] gi|260672001|gb|EEX58822.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 2 str. 86/8/59] gi|260674631|gb|EEX61452.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 6 str. 870] gi|260873079|gb|EEX80148.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 9 str. C68] gi|260915378|gb|EEX82239.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 3 str. Tulya] gi|260923960|gb|EEX90528.1| riboflavin biosynthesis protein RibD [Brucella ceti M13/05/1] gi|261294320|gb|EEX97816.1| riboflavin biosynthesis protein RibD [Brucella ceti M644/93/1] gi|261296646|gb|EEY00143.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis B2/94] gi|261303503|gb|EEY07000.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M163/99/10] gi|261737961|gb|EEY25957.1| riboflavin biosynthesis protein RibD [Brucella sp. F5/99] gi|261744502|gb|EEY32428.1| riboflavin biosynthesis protein RibD [Brucella suis bv. 3 str. 686] gi|263094456|gb|EEZ18278.1| riboflavin biosynthesis protein RibD [Brucella melitensis bv. 2 str. 63/9] gi|264660657|gb|EEZ30918.1| riboflavin biosynthesis protein RibD [Brucella pinnipedialis M292/94/1] gi|297175293|gb|EFH34640.1| riboflavin biosynthesis protein RibD [Brucella abortus bv. 5 str. B3196] gi|326408787|gb|ADZ65852.1| riboflavin biosynthesis protein RibD [Brucella melitensis M28] Length = 373 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|71898908|ref|ZP_00681075.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Ann-1] gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Ann-1] Length = 364 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 188/357 (52%), Gaps = 9/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R M AL + T NP V C+IV+DG V+G G G PHAEV AL Sbjct: 4 FSADDHRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L Sbjct: 64 AGDLARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARV 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + K+ Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRD- 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + L + DL+ +L +L RG+ + VE GA + Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 + +++ LVD +++Y + +++G+ P + L+ G +++ + G+D+ L Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358 >gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas fluorescens Pf0-1] gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas fluorescens Pf0-1] Length = 376 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 176/358 (49%), Gaps = 17/358 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA FM+ AL +R T NP V C+IV+DG ++G G G PHAEV AL AGE Sbjct: 9 LDAHFMARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALRAAGE 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+GR+PPCA ++ GI RVV + DP+ +V+GRGLQ L+ GI Sbjct: 69 RARGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIA 128 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E+E + +L R + +K+A+S D M S ITG +++ V Sbjct: 129 TESGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQ 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRAQ+ +L G TVLAD LT R L P+R+++D ++ LD+ Sbjct: 189 RLRAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDA 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K P ++ T + I DL +LL L RGV +LVE Sbjct: 249 PFFK---AGPALVATCVAIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVLVEA 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 G +A +F LVD +++ + +G P PL G D Sbjct: 306 GPRLAGAFAQFGLVDEFVIFIAGKFLGSTARPLLDWPLACMKDAPELKITEIRAVGDD 363 >gi|167464708|ref|ZP_02329797.1| riboflavin specific deaminase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 341 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 117/326 (35%), Positives = 182/326 (55%), Gaps = 6/326 (1%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL ++ G T NP V C++VKDG +IG G + G HAEV AL+ AG Sbjct: 5 QDEMYMRLALDMAKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGA 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 EA G+TAYVTLEPCSH+G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI Sbjct: 65 EAEGSTAYVTLEPCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIE 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD ++ E A+ V +T+K A + D I S ITG +S+ VH Sbjct: 125 VDVGLLAEEASAMNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVH 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R Q ILV + TV+ADDP+L+ RL + P+RI+ D +L L++++++ P Sbjct: 185 TMRHQHQGILVSVDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQP 243 Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I++T P A + + +++ C DL+ + L R + S+L+EGG + Sbjct: 244 TIVLTTELSSPERRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNG 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326 + + LVD I+L+ + +IG P Sbjct: 304 AMLEQGLVDKIMLFVAPKIIGGKLSP 329 >gi|56420832|ref|YP_148150.1| riboflavin-specific deaminase [Geobacillus kaustophilus HTA426] gi|56380674|dbj|BAD76582.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino)uracil reductase ) [Geobacillus kaustophilus HTA426] Length = 380 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 199/370 (53%), Gaps = 14/370 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ VG TS NP+V ++V G V+G G G PHAEV A+ AGE+ Sbjct: 4 DEHYMRLALDVAKAGVGQTSPNPAVGAVVVNGGTVVGLGGHLKAGEPHAEVYAIRMAGEK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSHYG++PPCA +I+ G+RRVVV DP+ V+G+G+ L Q GI + Sbjct: 64 ARGATVYVTLEPCSHYGKTPPCADLLIQAGVRRVVVATTDPNPLVAGKGIAKLRQAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + K +TLK A S D I A S IT ++ VH Sbjct: 124 DVGVLKDEADELNRMFFHYIAAKTPFVTLKFACSLDGKIATATGESKWITSSAAREDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVG+ TVL D+P+LT R G + +P+RIILD + LD+ ++ A Sbjct: 184 LRAQHDAILVGVNTVLTDNPKLTVRF-GEKRKNPLRIILDTKLRTPLDAHVV-ADKEAET 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I+T A A+ + + + D++ +L +L +GV SL VEGG+ V SF+ Sbjct: 242 WIITGGVSREQAAAYERLGVRVFSMPTAQIDVRDVLRLLGEQGVMSLFVEGGSRVHDSFL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGK- 357 + V+ +I Y + +IG G P+P+ + V R + G D+ + K Sbjct: 302 RAGAVNEVIAYIAPKLIGGRGAPTPVGGLGFARLAEAVELDIRRIETIGPDIKIVAAPKR 361 Query: 358 ---NLCLQEL 364 +LC L Sbjct: 362 KEESLCSLAL 371 >gi|290968502|ref|ZP_06560041.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1 str. 28L] gi|290781498|gb|EFD94087.1| riboflavin biosynthesis protein RibD [Megasphaera genomosp. type_1 str. 28L] Length = 378 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 126/365 (34%), Positives = 190/365 (52%), Gaps = 13/365 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M AL ++ +G TS NP V C+IVKDG ++G G G PHAEV AL+EAG+ A Sbjct: 4 AEYMKKALALAKIALGYTSPNPVVGCVIVKDGEIVGTGYHHQAGAPHAEVLALQEAGDRA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YVTLEPC+HYGR+PPCA+ +++ I++VV+ + DP+ V+G+G L Q GI+V+ Sbjct: 64 TGATVYVTLEPCAHYGRTPPCARTLVQHKIKKVVIAMLDPNPLVAGKGAAILRQAGIVVE 123 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ +E ++ + I +K+A S D I S IT S+ L Sbjct: 124 VGLLSAEAVKLNEVFIKNMLSNIPFIAIKLAQSLDGCIATRTGHSQWITNAWSRQYGQYL 183 Query: 187 RAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R+ D ILVGI T+L D+P LTC R H P+RI+LD + + L S+++ Sbjct: 184 RSIYDGILVGINTILEDNPLLTCRVRREGQAVPHQPIRIVLDTYGRTPLSSQVVNDKTAR 243 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 +I+ T A + ++ C DL L +L G+ S+LVEGG+ + Sbjct: 244 TIIMTTAQCPQEKKEALLAAGVTVLTAPTANTGCVDLHAALQLLRQEGIGSILVEGGSTI 303 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 SF +++LVD I + +IG + ++ CV Y D +E N Sbjct: 304 HGSFFDAKLVDKIYAFLGNSIIGGTCALCSVAGEGVDGLEECVPLHY---D-SIEIHDDN 359 Query: 359 LCLQE 363 + +Q Sbjct: 360 ILIQA 364 >gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c] gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c] Length = 364 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 123/357 (34%), Positives = 187/357 (52%), Gaps = 9/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D R M AL + T NP V C+IV+DG V+G G G PHAEV AL Sbjct: 4 FSVDDYRHMERALCLAERGAYTTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFALCA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L Sbjct: 64 AGDRARGATAYVTLEPCAHLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + K+ Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRD- 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + L + DL+ +L +L RG+ + VE GA + Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLEAVLRLLGERGINEVQVEAGATLC 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 + +++ LVD +++Y + +++G+ P + L+ G +++ + G+D+ L Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVVQVGNDLRL 358 >gi|239993720|ref|ZP_04714244.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC 27126] Length = 379 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 177/370 (47%), Gaps = 24/370 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ A++ ++ TS NP V C+IV + ++G+G G PHAEV AL A Sbjct: 9 DYFWMAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASN 68 Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A+GATAYVTLEPCSH+GR+PPCA ++E + RVV+ + DP+ V G G+ L + Sbjct: 69 ARPQGAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V +M +E ++ R + + +K+ +S D I + S ITG ++ Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSL 232 V RAQS +L G GTV AD+P L R Q P R+++D KL+ Sbjct: 189 RDVQQYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKLTR 248 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291 D + + T P A + + + D + DL L++ L + + Sbjct: 249 DYTLFNDGNI--TFTATSQAHPDTAT---QHYLQLDEKDGKLDLHALMSALGDKQYNEVW 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347 VE G +A + + LVD +I Y++ ++G+ G+ + N + G Sbjct: 304 VEAGPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVG 363 Query: 348 SDVCLEYIGK 357 +D+ L + Sbjct: 364 NDIKLIFRPD 373 >gi|161504399|ref|YP_001571511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865746|gb|ABX22369.1| hypothetical protein SARI_02510 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 367 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 182/368 (49%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPDVGCVIVNNGEIVGEGYHQRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+G GL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGCGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|284047735|ref|YP_003398074.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans DSM 20731] gi|283951956|gb|ADB46759.1| riboflavin biosynthesis protein RibD [Acidaminococcus fermentans DSM 20731] Length = 371 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 186/361 (51%), Gaps = 14/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M AL + G TS NP V C+IV +G ++G+G G PHAE+ A+ + Sbjct: 6 TVTDEEYMQMALDLAEKARGCTSPNPLVGCVIVNPEGQIVGKGYHHKAGQPHAEIMAMAD 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG + G TAYVTLEPCSHYGR+ PC + +I GI++VV DDP+ +V+GRG L + Sbjct: 66 AGNQVEGCTAYVTLEPCSHYGRTGPCCEALIRAGIKKVVAAADDPNPKVAGRGFARLQEA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V ++ + ++ R + LK A++ D I A S I+ S+ Sbjct: 126 GVEVVRGVLADKANRQNEVFMHWMKTGRPFVALKYAMTLDGKIATASGDSKWISNEQSRT 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR+ D ILVG TVL DDP LTCRL ++ +P+RI+LD H +L +D K+ Sbjct: 186 YAHKLRSIYDCILVGKNTVLNDDPSLTCRL--VEGKNPLRIVLDSHCQLPMDRKVFTDGE 243 Query: 242 LAPVIIVTENDDPVLALAFRKKN-INIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 +++ + D A AF+ + + + + DL LL L + TS+LVEGG+ Sbjct: 244 ARTLLVTSLKADRDKAAAFQALDQVTVWQIPEKNGALDLGILLDRLGQQEKTSVLVEGGS 303 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVC 351 V +F + RL + + + +IG + L + + FG+D+ Sbjct: 304 QVHGAFFDGRLAQRVYAFIAPCLIGGKRNLGAIGGRGARNMDLRVTLQEPQYEAFGTDLM 363 Query: 352 L 352 + Sbjct: 364 V 364 >gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 367 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 183/367 (49%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLERLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|227824644|ref|ZP_03989476.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21] gi|226905143|gb|EEH91061.1| riboflavin biosynthesis protein ribD [Acidaminococcus sp. D21] Length = 366 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 14/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G TS NP V C+IV DG V+G+G G PHAE+ A+++AGE Sbjct: 3 DEEYMQMALDLAEKARGATSPNPLVGCVIVSPDGHVVGKGYHHKAGEPHAEINAMDDAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GATAYVTLEPCSHYGR+ PC + +I+ GI++VV DP+ RVSGRG + L + G+ Sbjct: 63 KTAGATAYVTLEPCSHYGRTGPCCEALIKAGIKKVVAAATDPNPRVSGRGFRRLEEAGVE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ + ++ R + LK A++ D I S ITG ++ H Sbjct: 123 VVSGVLADKAYRQNEIFMHYMKTGRPFVALKYAMTLDGKIATVSGDSKWITGVKARTYAH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR+ DAILVG TV DDP LT RL ++ +P+RIILD L L+ K+ Sbjct: 183 RLRSWYDAILVGRETVAQDDPSLTVRL--VEGKNPLRIILDSKASLPLERKVFTDGAADT 240 Query: 245 VIIVTENDDPVLALAFRK-KNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 +++VT AF ++++ R DL LL L + VTS+LVEGG+ + Sbjct: 241 LLVVTPQALQEKVRAFADLPGVSVLTAAERDGHVDLSDLLQQLAKKDVTSVLVEGGSDIH 300 Query: 300 HSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCL 352 +F ++ LV+ + + + +IG P+ +G V D+ + Sbjct: 301 GAFFDAGLVERVYAFIAPSLIGGNKSRPAIGGQGASTMEQKVTLQEVTTLPLEPDLLV 358 >gi|256060883|ref|ZP_05451043.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] gi|261324881|ref|ZP_05964078.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] gi|261300861|gb|EEY04358.1| riboflavin biosynthesis protein RibD [Brucella neotomae 5K33] Length = 373 Score = 343 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAAMGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160] gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160] Length = 383 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 195/367 (53%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++ Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++ +E + +++R R + +K+A S D G+ S IT Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPRRVLIDSQLDVPLDAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291 AP +I + D A A R++ I+ DL ++L++L R V L Sbjct: 240 --AGAPTLIFCGHLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345 VE G + S + VD +++Y + ++G +PSP L E ++ NF + R Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIER-- 355 Query: 346 FGSDVCL 352 G D+ + Sbjct: 356 IGDDLRI 362 >gi|297569249|ref|YP_003690593.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus AHT2] gi|296925164|gb|ADH85974.1| riboflavin biosynthesis protein RibD [Desulfurivibrio alkaliphilus AHT2] Length = 368 Score = 343 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 131/361 (36%), Positives = 181/361 (50%), Gaps = 11/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 VS+ D +M AL +R VG TS NP V ++VKDG V+GRG G PHAE+ AL Sbjct: 2 VSATDQAYMKMALELARKGVGKTSPNPCVGAVLVKDGQVVGRGWHRRAGEPHAEINALAA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A GAT YVTLEPC+H GR+PPC++ I GIRRVV + DP+ G G + Sbjct: 62 AGDLAGGATIYVTLEPCNHQGRTPPCSKAIEAAGIRRVVYGMSDPNPVAGGGGAYLAGRG 121 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 ++ ++ + + + R + LK AVS D I A S ITG ++ Q Sbjct: 122 LEVLAGVLADDCRRLNLPFSKRVTTGYPWVQLKAAVSLDGRIAAATGRSKWITGEQARRQ 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR SDAILVG GTVLADDP LT RL G + P+R+ILD +K++ Sbjct: 182 VHRLRCLSDAILVGSGTVLADDPSLTTRLPG-KGRDPLRVILDSKLATPPAAKVVAHDSA 240 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296 A I D R+ + + L ++L L GVT+LLVEGG Sbjct: 241 AATWIFCGPDAAESKERQLRRPGVEVHRVGLEADGTLRLVEVLEHLGRAGVTTLLVEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 V SF+ L D +I + + +++G G+ + L + + R G D+ + Sbjct: 301 RVHGSFLRRGLADEVIFFIAPLLLGGDGMAAVSELGLADPSQAPRLHEIERRRCGDDLMI 360 Query: 353 E 353 Sbjct: 361 R 361 >gi|56414429|ref|YP_151504.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|168818973|ref|ZP_02830973.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|197363349|ref|YP_002142986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200389971|ref|ZP_03216582.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|56128686|gb|AAV78192.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094826|emb|CAR60359.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|199602416|gb|EDZ00962.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205344221|gb|EDZ30985.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320084692|emb|CBY94483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 367 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|168261151|ref|ZP_02683124.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350075|gb|EDZ36706.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 367 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 20/367 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYI 355 DVCL + Sbjct: 359 DVCLHMV 365 >gi|87308856|ref|ZP_01090995.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula marina DSM 3645] gi|87288567|gb|EAQ80462.1| riboflavin bifunctional biosynthesis protein RibG [Blastopirellula marina DSM 3645] Length = 373 Score = 342 bits (878), Expect = 4e-92, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 185/371 (49%), Gaps = 13/371 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D R M AL+ + G NP V C++V+ G VIGRG A G PHAE AL Sbjct: 1 MQFSADDERHMREALQLAALGQGAAEPNPMVGCVLVQHGQVIGRGYHAKYGGPHAERAAL 60 Query: 61 EEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + G++ GATAYVTLEPC H+G++PPC +I + RVV+ DP V G G+ L Sbjct: 61 SDCGDKQVNGATAYVTLEPCCHHGKTPPCTDALIAAKVARVVIAQQDPFGLVDGGGIDQL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E+E + Y R + K A++ D + S I+ + Sbjct: 121 KAAGISVQVGLLEAEAQRLNAPYRKLLATGRPWVIAKWAMTLDGKLATHTGHSRWISNEL 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ +VH LR + DAI+VG T DDP LT R GL +P+R+++D LS ++++ Sbjct: 181 ARERVHQLRGRMDAIVVGSRTAQLDDPLLTVRPAGL--RTPLRVVVDGDATLSPTHQLVQ 238 Query: 239 TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVE 293 TA PV++ DP A ++ I D L LL L R +T++LVE Sbjct: 239 TAREVPVLVAVKAEADPARCAALQQAGCEIFAGGGADHGQRLDALLIELGQRRLTNILVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 GGA + F+ +D + + + +IG PSP+ + + SDV +E Sbjct: 299 GGAGLLGQFLALGQIDEVFAFIAPKLIGGAQAPSPIGGDG----WSDMSEALALSDVSIE 354 Query: 354 YIGKNLCLQEL 364 +G N+ + L Sbjct: 355 SLGDNVLMHGL 365 >gi|328472537|gb|EGF43400.1| riboflavin-specific deaminase [Vibrio parahaemolyticus 10329] Length = 374 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 184/377 (48%), Gaps = 30/377 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVHAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQS IL TV+ D+ L R + L + P R+ILD K Sbjct: 189 QDVQCYRAQSGGILSTSKTVMDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288 LS D K+ T +I+ +E D + DL L + + Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD----------VCPQLDQSGKIDLAATLKAVATQHNIN 297 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 298 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVR 357 Query: 345 YFGSDVCL--EYIGKNL 359 G D+ + + K + Sbjct: 358 MVGRDIRITATLVRKEI 374 >gi|322614696|gb|EFY11625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322618802|gb|EFY15690.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623509|gb|EFY20348.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629193|gb|EFY25972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631913|gb|EFY28667.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637350|gb|EFY34052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642035|gb|EFY38645.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647854|gb|EFY44329.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652532|gb|EFY48886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653306|gb|EFY49639.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660545|gb|EFY56781.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664697|gb|EFY60890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669250|gb|EFY65400.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670795|gb|EFY66928.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678966|gb|EFY75021.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681994|gb|EFY78019.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685177|gb|EFY81174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194475|gb|EFZ79670.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196988|gb|EFZ82130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203973|gb|EFZ88990.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206942|gb|EFZ91895.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210840|gb|EFZ95712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214531|gb|EFZ99282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223088|gb|EGA07431.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227037|gb|EGA11218.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230145|gb|EGA14265.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233883|gb|EGA17972.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238423|gb|EGA22481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244111|gb|EGA28120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246271|gb|EGA30254.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251897|gb|EGA35760.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257894|gb|EGA41573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261093|gb|EGA44685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264977|gb|EGA48476.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272540|gb|EGA55947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 367 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|168465506|ref|ZP_02699388.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195631795|gb|EDX50315.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 367 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEVEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|121602090|ref|YP_988935.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis KC583] gi|120614267|gb|ABM44868.1| riboflavin biosynthesis protein RibD [Bartonella bacilliformis KC583] Length = 374 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 152/375 (40%), Positives = 223/375 (59%), Gaps = 12/375 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAE 56 M + D RFM+AA+R + HVGLT+ NPSV LIV++ ++G GVTA G PHAE Sbjct: 1 MNKKAQDCRFMAAAIRLAERHVGLTNENPSVGALIVRNDSTGPFIVGYGVTALRGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 VQAL+ AG ++GATAY+TLEPC HYG++ PC +I+ GI RVV+ + DPD RV GR + Sbjct: 61 VQALQMAGPLSKGATAYITLEPCVHYGKTSPCVDSLIDAGIARVVIALIDPDERVCGRSI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L I +V ++E E L AYL + KR +TLK+A+S DN +G G G V I+ Sbjct: 121 ALLQAADIEVVKGVLEKESSEMLSAYLCTKKLKRCEVTLKMAISADNGVGKKGQGGVKIS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G S H+LRAQ +AI+VGI T+LADDP+LTCRL GL+ SP+R+ILD ++ +D+K Sbjct: 181 GATSHTYTHILRAQHNAIMVGIRTILADDPQLTCRLQGLEMRSPIRVILDKDLRIPMDAK 240 Query: 236 IIKTALLAPVIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTS 289 +I+TA P ++ + + + + + + + + +L +L G+ S Sbjct: 241 VIQTATQVPTWVICDATLSNQSKKMKLEQYGVCVHSIEISNNFMQPLAILQLLCQLGINS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L+EGGA F+N+ VD +I + + +++GE I +P E YL + F + +D Sbjct: 301 VLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYLSE-FNEIETKMLEND 359 Query: 350 VCLEYIGKNLCLQEL 364 + K LC Q L Sbjct: 360 RLRRWRRKILCSQGL 374 >gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6] gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6] Length = 378 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 122/358 (34%), Positives = 179/358 (50%), Gaps = 17/358 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 11 LDAHYMARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALRAAGD 70 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +ARGATAYVTLEPCSHYG +PPCA ++ G+ RVV + DP+ V+GRG+Q L+Q GI Sbjct: 71 KARGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIE 130 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + +L R + +K+A+S D MA S ITG ++ V Sbjct: 131 VRSGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQ 190 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA++ +L G TVLAD LT R L P+R+++D ++ L++ Sbjct: 191 RLRAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNA 250 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K P +++T + + DL+ L L RGV +LVE Sbjct: 251 PFFK---AGPALVITCVTAQNQFPRGPECLVVPGVEGQVDLRSALVALAARGVNEVLVEA 307 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 G ++A +F LVD +++ + +G P PLE+ G D Sbjct: 308 GPSLAGAFAQQGLVDEYVIFVAGKFLGCAARPLLDWPLEKLADAPQLKITEMRAVGDD 365 >gi|239998220|ref|ZP_04718144.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae 35/02] gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02] gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02] Length = 369 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|240079985|ref|ZP_04724528.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae FA19] gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19] gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19] Length = 369 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 188/366 (51%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L DS+++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P +I T + +RK I DL L+ +L G ++VE G Sbjct: 240 QSPTLIATLERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546] gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546] Length = 368 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 179/368 (48%), Gaps = 28/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S D + MS A+ ++ + T+ NP+V C+I +DG ++G G G PHAEV AL Sbjct: 3 TFTSQDFKMMSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L Sbjct: 63 MAGEKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRD 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E + A++ R + LK+A S D +A S IT ++ Sbjct: 123 AGIEVEVGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQS AIL TV+ D+ L R + L + P+R+ILD Sbjct: 183 QDVQKYRAQSGAILSTSKTVIDDNASLNVRWDDLPQSVQSHYPEQQLRQPVRVILDRQGL 242 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVT 288 L+ + K+ T +IV E D L L + DL+ L + Sbjct: 243 LTPELKLFNTEGGR--LIVAEQGDVELQLNTEHQ---------VDLRATFADLANKHNIN 291 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344 L VE GA +A S I + LVD ++LY + ++G G G Sbjct: 292 HLWVEAGATLASSLIKADLVDELVLYLAPKIMGSDGRGLLGALGLESMAEVIELDIKDIR 351 Query: 345 YFGSDVCL 352 GSD+ + Sbjct: 352 QVGSDIRI 359 >gi|260899221|ref|ZP_05907616.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] gi|308106651|gb|EFO44191.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] Length = 374 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 188/376 (50%), Gaps = 28/376 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG++IG G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIIGEGYHHRAGEPHAEVYAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L + P R+ILD K Sbjct: 189 QDVQRYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 LS D K+ T IIV+ D L K I++ LK ++T + Sbjct: 249 LSDDLKLFSTEGER--IIVSSEGDVCPQLDQSGK-IDVTAT----LKAVVT---QHNINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLNITDVRM 358 Query: 346 FGSDVCL--EYIGKNL 359 G D+ + + K + Sbjct: 359 VGRDIRITATLVRKEI 374 >gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans PsJN] gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans PsJN] Length = 383 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 187/367 (50%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL ++ + T NP V C++VK+G VIG G T G HAE++AL++ Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P +T R P R+++D + D++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPQRVLIDSQLDVPPDAQILA 240 Query: 239 TALLAPVIIVTENDD---PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 A +I N D A A R + I+ DL +L +L R V L Sbjct: 241 GAS---TLIFCGNLDGRHTDRAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345 VE G + S + VD +++Y + ++G + +P EG ++ NF V D Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETLEGRVKLNFHAV--DR 355 Query: 346 FGSDVCL 352 G DV + Sbjct: 356 IGEDVRI 362 >gi|294788324|ref|ZP_06753567.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC 29453] gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC 29453] Length = 363 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 121/358 (33%), Positives = 186/358 (51%), Gaps = 11/358 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 5 FSDLDHAHMHRALELAWQGRFSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPC+HYGR+PPCA+ + E G+ RVV + DP+ V+G+GL L+ Sbjct: 65 AGSLAQGATAYVTLEPCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E + + +L+R KR I+LK+A S D ++ S ITG ++++ Sbjct: 125 GVLVECGLLEHKARELNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V LRAQS AIL GIGT+LAD+P+L R P+R+ILD +F+L S++++ Sbjct: 185 DVQQLRAQSCAILTGIGTILADNPQLNVR-QFNTLRQPIRVILDSYFRLPEKSQVVQDDG 243 Query: 242 LAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + T D P + + +L + IL GV +L+E G +A Sbjct: 244 E--TWLFTLTDTPSWVAKYENLRVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQTLA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 +F+ + LVD I+ ++S ++G +P ++ + G D+ Sbjct: 302 TAFLQADLVDEIVYFQSPKILGNTARGIFKLPENPTVLTKSPDWRTISVTSIGDDIKW 359 >gi|16763796|ref|NP_459411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161615396|ref|YP_001589361.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167992266|ref|ZP_02573364.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168240239|ref|ZP_02665171.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194442362|ref|YP_002039658.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449088|ref|YP_002044451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197264648|ref|ZP_03164722.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|224582254|ref|YP_002636052.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|16418920|gb|AAL19370.1| pyrimidine deaminase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161364760|gb|ABX68528.1| hypothetical protein SPAB_03167 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401025|gb|ACF61247.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407392|gb|ACF67611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197242903|gb|EDY25523.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329484|gb|EDZ16248.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339872|gb|EDZ26636.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224466781|gb|ACN44611.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245699|emb|CBG23495.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992127|gb|ACY87012.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157027|emb|CBW16510.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911449|dbj|BAJ35423.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225143|gb|EFX50204.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323128735|gb|ADX16165.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332987364|gb|AEF06347.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 367 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|73748880|ref|YP_308119.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1] gi|147669641|ref|YP_001214459.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. BAV1] gi|73660596|emb|CAI83203.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. CBDB1] gi|146270589|gb|ABQ17581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. BAV1] Length = 365 Score = 342 bits (877), Expect = 5e-92, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 182/358 (50%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 S + +LVD ++++ + I+IG P+ E F + FG DV + Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLI 358 >gi|167551773|ref|ZP_02345526.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323400|gb|EDZ11239.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 367 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D + R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQGDSRAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|16759393|ref|NP_455010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142835|ref|NP_806177.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213427850|ref|ZP_03360600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213650168|ref|ZP_03380221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855380|ref|ZP_03383620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|289825059|ref|ZP_06544411.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25331497|pir||AH0553 riboflavin biosynthesis protein RibD [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16501684|emb|CAD08872.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhi] gi|29138467|gb|AAO70037.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 367 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D + R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|256369199|ref|YP_003106707.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915] gi|255999359|gb|ACU47758.1| riboflavin biosynthesis protein RibD [Brucella microti CCM 4915] Length = 373 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 229/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDKKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|86609303|ref|YP_478065.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557845|gb|ABD02802.1| riboflavin biosynthesis protein RibD [Synechococcus sp. JA-2-3B'a(2-13)] Length = 370 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 179/359 (49%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D ++M L +R S NP V+C+IV+ V+G GV G PHAEV AL++AG Sbjct: 4 DQQWMERCLSLARSTPQRPSPNPRVSCVIVQGDRVVGEGVHPGAGQPHAEVLALQQAGSL 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YV LEPC+HYGR+PPC + I+ GIRRVVV + DP+ V+G+G++ L + GI + Sbjct: 64 ARGATLYVNLEPCNHYGRTPPCTEAILAAGIRRVVVGMQDPNPLVAGKGIRRLQEAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + V ++ LK A++ D A S I+ ++ VH Sbjct: 124 TVGVLERECQELNEGFAFAIVRQQCFGLLKYAMTLDGKSAAATGHSRWISNSPARQWVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DA++VG TV D+P LTCRL LQ P+R++L L + + + + Sbjct: 184 QRAWHDAVIVGSRTVWQDNPRLTCRLAELQGSQPLRVVLSRSLNLPPVAHLWQVEEAPTL 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I L + K+ + +++ + +L RG S L E G +A + + Sbjct: 244 VITEAVATHPLWGSLAKQGVELLHLPQVTPSRAAQVLFQRGCLSALWECGGTLAWAALKD 303 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEYIGKNLCL 361 + + + + ++G P+P+ + +++ V LE +G N + Sbjct: 304 GAIQKVAAFIAPKILGGAAAPTPVAGEGIPDVNQSWQLVEPR-------LETLGDNWLI 355 >gi|254467350|ref|ZP_05080761.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium Y4I] gi|206688258|gb|EDZ48740.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium Y4I] Length = 365 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 132/362 (36%), Positives = 189/362 (52%), Gaps = 11/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D R+M+ AL R G NP+V C+IVK ++GRG T GG PHAE +AL +AG Sbjct: 2 DTDHRYMALALSLGRRGQGNCWPNPAVGCVIVKGRRIVGRGWTKPGGRPHAETEALAQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPC+H G +PPCAQ +I+ G+ RVV + D D RVSG+G++ L GI Sbjct: 62 EAARGATAYVTLEPCAHQGATPPCAQALIKAGVARVVAAIGDSDPRVSGQGIRMLRDAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ + + + R +TLK+A S D I S ITG ++ V Sbjct: 122 RVDTGVWGAQAARDHAGFFLKTEQGRPLVTLKLASSFDGRIATGSGKSKWITGPEARRAV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RA+ DA++VG GT ADDP LT R G+ E P+R+++ H L L ++ +TA Sbjct: 182 HAMRARHDAVMVGGGTARADDPSLTVRDLGV-ERQPVRVVISRHLDLPLMGQLARTAKKV 240 Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 PV + D A+ +I C D +L L G+T + EGG+A+ Sbjct: 241 PVWLCHGHGADQERIQAWEGLGAKLIPCASHGVQLDAVDVLQQLGQAGLTRVFCEGGSAL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A S + LVD +I + + + IG G+PS + F V G D+ + Sbjct: 301 AASLLAFDLVDELIGFTAGLGIGAEGLPSIGALGIGRLEEAPRFELVETRPLGGDILHRW 360 Query: 355 IG 356 Sbjct: 361 TR 362 >gi|15964963|ref|NP_385316.1| riboflavin biosynthesis protein [Sinorhizobium meliloti 1021] gi|307301034|ref|ZP_07580803.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti BL225C] gi|307317768|ref|ZP_07597206.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83] gi|15074142|emb|CAC45789.1| Probable riboflavin biosynthesis protein (deaminase/reductase) [Sinorhizobium meliloti 1021] gi|20385601|gb|AAM21351.1| riboflavin-specific deaminase/reductase [Sinorhizobium meliloti] gi|306896530|gb|EFN27278.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti AK83] gi|306903989|gb|EFN34575.1| riboflavin biosynthesis protein RibD [Sinorhizobium meliloti BL225C] Length = 401 Score = 342 bits (877), Expect = 6e-92, Method: Composition-based stats. Identities = 181/396 (45%), Positives = 237/396 (59%), Gaps = 46/396 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AALR +R ++GLTSTNPSV C+IV G ++GR VTA GG PHAE QAL EAGE+ Sbjct: 8 DERFMAAALRLARRNLGLTSTNPSVGCIIVNKGTIVGRAVTAPGGRPHAETQALAEAGEK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYV LEPCSH+G++PPCA +I G+ RVVV + DPD RV+GRG+ L GI + Sbjct: 68 ARGATAYVALEPCSHHGKTPPCADALIASGVGRVVVSILDPDERVAGRGVVMLRGAGIDV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + EG L AYL RQ +KR H+TLK+AVS D MIG G G V I+G +S+ QV + Sbjct: 128 DIGTLHEEGGRVLEAYLMRQRKKRPHVTLKLAVSADGMIGRRGEGQVRISGAVSRAQVQV 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DAILVGIGT +ADDPELT R+ GL+E SP+RI+LD L L+SK+++TA P+ Sbjct: 188 LRAETDAILVGIGTAIADDPELTVRMPGLEERSPVRIVLDRRLDLPLESKLVRTARDVPL 247 Query: 246 IIVTEN-------------------------------------------DDPVLALAFRK 262 I+VT + D A Sbjct: 248 IVVTGDAGYPSSHEQGAGARRADEGQSSLPLSSGSTREPVLSPLAEAGTDYDARRGALEA 307 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 ++ D + LL L RG++SLLVEGGA A SF+++ LVD I+L+ IGE Sbjct: 308 AGAELLSADT--IPDLLAALASRGISSLLVEGGARAARSFLDADLVDRILLFTGPAAIGE 365 Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 GGI SP + + + F R +G D+ +Y + Sbjct: 366 GGISSPFQRTSVPEGFTLRRTARYGDDIFEDYERDS 401 >gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014 str. F0314] gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 191/359 (53%), Gaps = 13/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D R M AL +R TS NP V C+I G ++G+G G PHAEV AL +AG Sbjct: 4 ENDVRMMQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L I Sbjct: 64 EMARGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAADI 123 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E+E + +L+R R + +K A S D ++ S ITG ++ V Sbjct: 124 RTESGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAAREDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 +LRA+S A++ G+GTVLAD+P+L R P+R+I D + D +II+ + Sbjct: 184 QILRAESCAVVTGVGTVLADNPQLNVR-AFPTVRQPVRVIADSRLQTPPDCRIIRDGG-S 241 Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 PV+I T + D AF R ++ II + DL LL IL +G ++VE GA + Sbjct: 242 PVLIATLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAVL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D ++LY++ ++G G +P + + G D+ Sbjct: 302 SSAFLAEDLADELVLYQAPKILGCPGRSMFTLPENPAALTESPCWETRSVETLGGDIKW 360 >gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908] gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908] Length = 379 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 192/377 (50%), Gaps = 29/377 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D MS A++ +R + T NP V C++ KDG ++G G G PHAEV AL Sbjct: 1 MNWSVEDIEMMSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHAL 60 Query: 61 EEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A + A+GATAYVTLEPCSHYGR+PPCA+ +I + RVVV V+DP+ +V GRG+ Sbjct: 61 AMANSDSNLGAKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI + +++ E ++ R +T+K+A S D +A S IT Sbjct: 121 AMLRDAGIQVDVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225 G ++ V LRA+ A++ G+ T+LAD+P L R + L H P+R++LD Sbjct: 181 GPEARRDVQRLRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLD 240 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLT 280 +++ D + A+ +P+++V+ +D P + ++ + +C DL +L Sbjct: 241 SRARVTSDLALF--AIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFK 298 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLE 335 L + S+L+E GA +A S I D ++LY++ ++G G +P + Sbjct: 299 YLG-KQCNSVLIEAGATLAGSVIAKGHGDELVLYQALKMLGSSGRNLITLPEYTAMSQIP 357 Query: 336 KNFMCVRRDYFGSDVCL 352 V G+D L Sbjct: 358 A-IKLVDERKVGADTRL 373 >gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 367 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D + R ++ + DL L+ L + + S+ VE Sbjct: 242 YRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|94311620|ref|YP_584830.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Cupriavidus metallidurans CH34] gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus metallidurans CH34] Length = 373 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 189/371 (50%), Gaps = 17/371 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D M AL + + T+ NP V C+++KDG+VIG G T G HAE+QA+++ Sbjct: 2 FSAADYTAMEQALALAARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + GATAYVTLEPCSH+GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L Sbjct: 62 AISRGHDPAGATAYVTLEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E E + +++R + +K+A S D + S ITG Sbjct: 122 RDAGIDVRCGLLEKEARDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQP 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV D+P LT R P R+++D ++ LD++I+ Sbjct: 182 ARDDGHAWRARACAILTGIGTVRDDNPALTVR-AIPTPRQPQRVLVDSRLEVPLDAQILN 240 Query: 239 ---TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291 PV++ +D A + + ++ +L+++L L RG+ L Sbjct: 241 RDTGDFAKPVLVFCAIEDKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELH 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFG 347 VE G + S I D +++Y + ++G+ +P PL + F G Sbjct: 301 VEAGFKLNGSLIREGCADELLVYLAPKLLGDAQGMFNLP-PLSKLEDATEFRWHEVRQIG 359 Query: 348 SDVCLEYIGKN 358 D+ L + Sbjct: 360 DDLRLIARRAD 370 >gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b] gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b] Length = 354 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 126/352 (35%), Positives = 190/352 (53%), Gaps = 7/352 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A++ ++ G T NP V ++VKDG ++G G G PHAEV A+ AG A Sbjct: 2 KQYMEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAAA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GAT YVTLEPCSH+G++PPCA I+E GI+RVV+ + DP+ V+G G+ L G+ VD Sbjct: 62 YGATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVD 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E+E + A+L KR ++ LK A S D + + S +T ++ VH L Sbjct: 122 VGLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHEL 181 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA DAIL GIGTVLADDP LT RL+ + P R++LD +L S + +TA PV+ Sbjct: 182 RATVDAILTGIGTVLADDPSLTVRLDRVT-RQPKRVVLDRDLRLPFASTLARTAEDVPVL 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + T +D+ + I + D L +L L G+ +L+E G + S ++ Sbjct: 241 LFTSSDEAERRERAKAAGIELF--DYTSLGTVLETLYANGIGRVLIEAGPTLVTSLLDGG 298 Query: 307 LVDSIILYRSQIVIGEG-GIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYI 355 VD + Y+S V G G+ +EG ++ F + + G D+ + Sbjct: 299 YVDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDLKVVLR 350 >gi|209964642|ref|YP_002297557.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW] gi|209958108|gb|ACI98744.1| riboflavin biosynthesis protein RibD [Rhodospirillum centenum SW] Length = 379 Score = 341 bits (876), Expect = 7e-92, Method: Composition-based stats. Identities = 146/367 (39%), Positives = 210/367 (57%), Gaps = 12/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AAL + +G NPSV C++V++G V+GRGVT GG PH E +AL + Sbjct: 12 FSDQDRAHMRAALTLAARGLGRVWPNPSVGCVLVREGRVVGRGVTGAGGRPHGETEALRQ 71 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARGATAYV+LEPC+H+GR+PPC + ++ G+ RVVV +DPD RVSG GL L Sbjct: 72 AGEQARGATAYVSLEPCNHHGRTPPCTEALMAAGVARVVVACEDPDPRVSGGGLARLRAA 131 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E + + R E R +TLK+A S D I S ITG +++ Sbjct: 132 GLEVASGLLEAEAQELNAGFFLRIREGRPLVTLKLATSLDGRIATRTGESRWITGPVARA 191 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRA DAILVGIGT LADDPELTCRL G+ + SP+RI+LD +L L S++++TA Sbjct: 192 WGHGLRASHDAILVGIGTALADDPELTCRLPGMADRSPVRIVLDSRLRLPLTSRLVRTAD 251 Query: 242 LAPVIIVTENDD--PVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEG 294 PV ++T D P AF +++I + L + L L RG+T +L EG Sbjct: 252 RTPVWLITRPDAAEPARMAAFADCGVDLIPVEPGPGGEIPLPQALRTLAARGITRVLAEG 311 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDV 350 GA +A S + L D + +R+ +++G +P+ + G + + G D+ Sbjct: 312 GARLAASLLRDGLADRLEWFRAGLLLGGDALPAAVGFGADRLADAPRYERIAVRPAGEDL 371 Query: 351 CLEYIGK 357 Y + Sbjct: 372 LESYRRR 378 >gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 372 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 125/371 (33%), Positives = 197/371 (53%), Gaps = 17/371 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +FMS AL ++ + L++ NP V C+I K+G +IGRG T G HAEVQAL +A Sbjct: 3 SAVDHQFMSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G +A G+T YVTLEPCSH G++PPC +I +V+V + DP+ V+G+GL+ L Sbjct: 63 KARGNDATGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLK 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +MESE ++ +++R + +KIA S D + S ITG ++ Sbjct: 123 LAGIEVQYGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RAQ+ AI+ G+GTV DDP L R + P+R I+D + +++KI+K Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVETR-RQPVRTIIDSKLETPINAKILKN 241 Query: 240 ALLAPVIIVTENDDP----VLALAFRKKNINIIYC----DCRDLKKLLTILV-GRGVTSL 290 L+ ++IV N D A AF + I +I DL L + L R + + Sbjct: 242 PELSDILIVCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFG 347 +E G + S + +D ++LY + ++G+G S L + +N+ + + G Sbjct: 302 HIEAGFKLNDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLG 361 Query: 348 SDVCLEYIGKN 358 SD+ L I + Sbjct: 362 SDLRLRLIKNS 372 >gi|168237529|ref|ZP_02662587.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734520|ref|YP_002113449.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710022|gb|ACF89243.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197289553|gb|EDY28916.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 367 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 184/368 (50%), Gaps = 20/368 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 +I++ I +D A + I++ + DL L+ L + + S+ V Sbjct: 242 HRIVQQPGE--TWIARTQEDS-RAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQINSIWV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + + LVD +I+Y + ++G LE+ F + G Sbjct: 299 EAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGP 358 Query: 349 DVCLEYIG 356 DVCL + Sbjct: 359 DVCLHMVS 366 >gi|289432876|ref|YP_003462749.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT] gi|288946596|gb|ADC74293.1| riboflavin biosynthesis protein RibD [Dehalococcoides sp. GT] Length = 365 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 182/358 (50%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GAT YVTLEPC H GR+PPC +I GI+ V + D + VSG+G + L GI V Sbjct: 62 GATLYVTLEPCCHQGRTPPCTGSVIASGIKEVYIATLDDNPLVSGKGKKELEAAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHVTTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 S + +LVD ++++ + I+IG P+ E F + FG DV + Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGVGAELITDSAKFKDITTTIFGQDVLI 358 >gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114] gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114] Length = 367 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 13/368 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R + P RI+LD ++ LD ++ T Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLV-TDT 239 Query: 242 LAPVIIVTENDDPVLALAFRK-KNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGG 295 +P +IVT + D A R ++I II +L L+ L G +LVE G Sbjct: 240 ESPTVIVTLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVC 351 + +A +F+ LVD I+LY++ ++G G L E + + + G D+ Sbjct: 300 STLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAVLLSDSPWQSQSVEIIGQDIK 359 Query: 352 LEYIGKNL 359 K++ Sbjct: 360 WVLRKKSI 367 >gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC 13091] gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC 13091] Length = 369 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 184/366 (50%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I V+G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+G L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G L E + V + G D+ Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHDIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685] gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685] Length = 361 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 184/359 (51%), Gaps = 11/359 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMHQALDLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ +I+ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S IT ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P+L R + P RI+LD +L S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPQLNVR-DFPTLRQPARIVLDSRLRLPPYSHLVTDGQSPTYIAT 239 Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E D+ L +I I+ DL L+ +L G ++VE G+ + +F+ Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L D I+LYRS ++G G +P + V + G D+ + + Sbjct: 300 AEDLADEIVLYRSPKILGSGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKND 358 >gi|119356772|ref|YP_911416.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlorobium phaeobacteroides DSM 266] gi|119354121|gb|ABL64992.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlorobium phaeobacteroides DSM 266] Length = 366 Score = 341 bits (875), Expect = 9e-92, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 184/357 (51%), Gaps = 13/357 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65 +M+ + G+ S NP V +IV +G ++G G G PHAEV A+ G E Sbjct: 7 EWYMNRCFELALQGSGMVSPNPMVGSVIVHNGEIVGEGYHERFGGPHAEVHAIASVGNAE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YV LEPCSH+G++PPCA I+ I RVV+ DP +V+G+G++ L+ G+ Sbjct: 67 VLQNSTLYVNLEPCSHFGKTPPCADLILAKRIPRVVIGCRDPHEKVAGKGIERLTAAGVQ 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ E A++ +TLK+A + D I AG S ITG S+ QVH Sbjct: 127 VTEGVLMPEALKLNEAFIKSCTVGLPFVTLKLAQTLDGKIATAGGASRWITGEESRTQVH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA++VG TV ADD ELT R +P+R++LD L D++I T Sbjct: 187 RLRCNCDAVVVGEATVQADDSELTVR--HCAGRNPLRVLLDRRLSLFADARIFSTEAATL 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + V A RK+ + +I D DLK++L L RG+ SLLVEGG+ ++ Sbjct: 245 VFTTRASSCSVKAEQLRKRGVEVIGVDEDATGLDLKRILQELHRRGIISLLVEGGSRLSA 304 Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 SF+ + LVD ++++ + + G G P +E +FG D+ LE Sbjct: 305 SFLGAALVDKLLVFIAPRLFGGDGLSAFAPLGVELPDQAVQLRFQPPVFFGRDLLLE 361 >gi|26522745|dbj|BAC44849.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium phosphoreum] Length = 388 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 177/335 (52%), Gaps = 16/335 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D + MS A+ ++ T+ NP+V C+IV DG ++G G G PHAEV AL + Sbjct: 1 MTHTDQQMMSRAIALAKHGCYTTAPNPNVGCVIVNDGDIVGEGYHYQAGQPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + A+GAT YVTLEPCSHYGR+PPCA+ +I + RVV + DP+ V+GRG+ L Sbjct: 61 AQQRAQGATVYVTLEPCSHYGRTPPCAEALINAKVARVVCAMVDPNPAVAGRGIALLRAA 120 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD ++ S+ + ++ + + ++ LK+A S D +A S ITG ++ Sbjct: 121 GIEVDVGVLASQAQALNPGFIKQMSHQMPYVELKLAASLDGRTALANGVSKWITGPKARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TV+ADDP L R + L+E P+R+I+D +L Sbjct: 181 DVQHFRAQAGAILSTSATVIADDPSLNVRWSELEESVQQAYPQSALRQPIRVIIDSQNRL 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288 + + ++ L I+ ++ D DL L++ L G+ Sbjct: 241 TPEYQLFH--LPGETILARTEIGTEAWPDSVQQWQIPTQTDSHQLDLVVLMSRLANYGIN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + VE GA +A + + +LVDS+ILY++ ++G Sbjct: 299 HIWVEAGARLAGALLQQQLVDSLILYQAPKLMGSD 333 >gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus VCS1703A] gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus VCS1703A] Length = 368 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 114/352 (32%), Positives = 170/352 (48%), Gaps = 9/352 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M AL +R + + NP V C+IVK+ +IG G G HAE+ AL AG Sbjct: 10 DSDLFYMHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAG 69 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +AR AT YVTLEPC+H+GR+PPC +I G++RVV+ DP+ V+G+G+ L GI Sbjct: 70 TQARDATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGI 129 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E + R R +TLKIA S D +A S ITG +++ V Sbjct: 130 SVEQGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDV 189 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H R +DA+L G G+V+ D+ LT R L + P+R+++D K ++ + Sbjct: 190 HFHRLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKTPANAALFCDP-- 247 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +P+++VT P ++ L LL L R + L VE G +A + Sbjct: 248 SPILMVTTQPPPQSFPQMVEYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGA 307 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 F+ +LVD I+LY + +G+ P PL F G D Sbjct: 308 FLTEQLVDEILLYLAPTFLGDSARPLVALPPLAHLSDRMRFSIADAHLIGDD 359 >gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Dixon] gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella fastidiosa M12] gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Xylella fastidiosa Dixon] gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase, 5-amino-6-(5-phosphoribosylamino)uracil reductase [Xylella fastidiosa M12] Length = 364 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 185/357 (51%), Gaps = 9/357 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D M AL + T NP V C+IV DG V+G G G PHAEV AL Sbjct: 4 FSADDHCHMERALCLAERGAYTTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFALRA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H GR+PPCA +I+ G+RRVV + DP V+G G+ L Sbjct: 64 AGDCARGATAYVTLEPCAHSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +ME++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 124 GVTVEHGLMEAQARALNRGFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT 239 V RA++ AIL G GTVLADDP LT RL G + P+R++LD + K+ Sbjct: 184 DVQRWRARASAILTGAGTVLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRD- 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + L + DL +L +L RG+ + VE GA + Sbjct: 243 -GTAPTLYLHGFGVTSPVLQHVDFSEVQQRDAGLDLGAVLRLLGERGINEVQVEAGATLC 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 + +++ LVD +++Y + +++G+ P + L+ G +++ + G+D+ L Sbjct: 302 GALLHAGLVDELLIYIAPLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRL 358 >gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae NCCP11945] gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18] gi|240112192|ref|ZP_04726682.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11] gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae NCCP11945] Length = 361 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 183/358 (51%), Gaps = 11/358 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239 Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E D+ L +I I+ DL L+ +L G ++VE G+ + +F+ Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L D I+LYRS ++G G +P + V + G D+ + Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357 >gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas perforans 91-118] gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas perforans 91-118] Length = 369 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 189/359 (52%), Gaps = 8/359 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 7 TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + Sbjct: 67 AAGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLRE 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 127 AGIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239 RA++ AIL G GTV+ADDP +T RL + P+R++LD + L + I+ Sbjct: 187 ADGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRT-LACRNIRQ 245 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + + +L + + DL +L +L RG+ + VE GA ++ Sbjct: 246 GS-APTLYLHGENVAAPSLDDAQFLAVPLQAGRFDLPAVLALLAERGINEVHVEAGAMLS 304 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + + LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRY 363 >gi|189424808|ref|YP_001951985.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ] gi|189421067|gb|ACD95465.1| riboflavin biosynthesis protein RibD [Geobacter lovleyi SZ] Length = 367 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 192/367 (52%), Gaps = 10/367 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S+ D +M A+ +R +G T+ NP+V C+IV DG+++G G G PHAEV AL Sbjct: 1 MSTSDIAYMKRAISLARKGLGRTAPNPAVGCVIVCDGVIVGEGWHKKAGTPHAEVHALAM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GA YVTLEPC H+G++PPC +I G+RRVV + DP ++V+G+GLQ L Q Sbjct: 61 AGAAAKGADVYVTLEPCCHHGKTPPCCDALIAAGVRRVVAGMVDPFLQVAGKGLQTLRQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E + K ++ ++ K A++ D I S +TG S+ Sbjct: 121 GVRVEVGLLEQQCKELNKGFIKSVTTGMPYLLYKTAMTMDGNIATVTGHSRWVTGEESRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA DA++VG+ TV+AD+P+LT R ++ P+R+I+D + ++ Sbjct: 181 LVHRLRAHCDAVMVGVDTVIADNPQLTVR--HVRGRDPLRVIVDTRLRTPESVNVLNGTD 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 +I T +P + + + +I+ C D + LL L RGV S+LVEGG+ Sbjct: 239 AGRTVIATCETNPDIHQRYLSQGADILVCREYDGRVEMTDLLRKLAVRGVQSILVEGGSR 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF---GSDVCLEY 354 +A + L+D I + + V+G G P ++ + + G DV + Sbjct: 299 LAGDLLQRNLIDECIFFYAPKVVGNGFAPFAIQGISTMDEAIQLEVQRVGMSGPDVVVYA 358 Query: 355 IGKNLCL 361 +CL Sbjct: 359 RPVGVCL 365 >gi|62179027|ref|YP_215444.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62126660|gb|AAX64363.1| pyrimidine deaminase/reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322713488|gb|EFZ05059.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 367 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 184/367 (50%), Gaps = 18/367 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+G++PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGQTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R ++ LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 LRAQS AIL TVLADDP LT R L P+RI++D +++ Sbjct: 182 RLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPA 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 +I++ I T+ D A R ++ + DL L+ L + + S+ VE Sbjct: 242 HRIVQQPGE-TWIARTQEDSRAWPDAVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G +A + + + LVD +I+Y + ++G LE+ F + G D Sbjct: 300 AGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPD 359 Query: 350 VCLEYIG 356 VCL + Sbjct: 360 VCLHMVS 366 >gi|240114937|ref|ZP_04728999.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae PID18] Length = 361 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 187/358 (52%), Gaps = 11/358 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L DS+++ +I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPDSRLLTDGQSPTLIAT 239 Query: 249 TENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E ++ L + ++ I+ DL +L+ +L G G ++VE GA + +F+ Sbjct: 240 LERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L D I+LYRS ++G G +P + V + G D+ + Sbjct: 300 AENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357 >gi|85706317|ref|ZP_01037411.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217] gi|85669090|gb|EAQ23957.1| riboflavin biosynthesis protein RibD [Roseovarius sp. 217] Length = 364 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 143/364 (39%), Positives = 197/364 (54%), Gaps = 11/364 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DARFM+ AL R +G + NP+V C+IV+ ++GRG TA GG PHAE QAL + Sbjct: 1 MSGADARFMALALSLGRRGMGQCAPNPAVGCVIVQGRHIVGRGWTAPGGRPHAETQALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYV+LEPC+H+G++PPCA +I GI RVV DD D RV+GRG L Sbjct: 61 AGDLARGATAYVSLEPCAHHGKTPPCADALIAAGITRVVAPFDDNDPRVAGRGFARLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ L +L R R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVRTGVLADVAGRDLAGFLMRNEIGRPLVTLKLASSFDGRIATATGHSQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG GT ADDP LT R G + P+R+++ L L S + +TA Sbjct: 181 VVHTLRARHDAVMVGAGTARADDPMLTVRDMGAR-RQPVRVVVSRRLDLPLLSNLARTAK 239 Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 P+ + N DP L A+R ++ C+ R D +L L G+T + EGG Sbjct: 240 DVPLWLCHGPNVDPALVAAWRGIGARLVSCEVRLGQVDPASVLKALGAEGLTRVFCEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 A+A S +++ LVD +I + + IG G+P L F V G DV Sbjct: 300 ALAASLLSAGLVDELIGFTAGFAIGAEGLPGIGALGLARLEEAARFRLVETRSLGGDVMH 359 Query: 353 EYIG 356 + Sbjct: 360 RWTR 363 >gi|262038723|ref|ZP_06012083.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii F0264] gi|261747275|gb|EEY34754.1| riboflavin biosynthesis protein RibD [Leptotrichia goodfellowii F0264] Length = 382 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 117/369 (31%), Positives = 196/369 (53%), Gaps = 17/369 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S DA +M AL ++ +G + NP V +IVK+G +IG G G HAEV A+E Sbjct: 13 NISKEDAEYMKMALELAKKGIGRVNPNPLVGAVIVKNGKIIGEGYHKMFGEAHAEVHAIE 72 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGEE + AT YVTLEPCSHYG++PPCA+ II+ GI+R V+ DP+ V+G+G++ L Sbjct: 73 NAGEETKNATIYVTLEPCSHYGKTPPCAEKIIKAGIKRCVIGSGDPNPEVAGKGIEMLKN 132 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +++ E + K ++ LK ++ D I ++ S IT ++ Sbjct: 133 SGIEVTENVLKKECDELNQVFFKYIKSKIPYLFLKCGITLDGKIALSNGESKWITNEKAR 192 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + I+VGI TVL D+P LT R+ P RII+DP+ +++ D IIK Sbjct: 193 EKVQYYRNKFMGIMVGINTVLYDNPSLTARIE--NGVDPFRIIIDPNLRITEDYNIIKNN 250 Query: 241 LLAPVIIVTE----NDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEG 294 +IVT N D V RKK + I+ ++ ++ +L + G+ S+L+EG Sbjct: 251 SDGKTVIVTSVINKNSDKVEIFKERKK-LKFIFLKGKNFLMRDILEEIGKEGIDSVLLEG 309 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGS 348 G + + +++D ++ S + G+ S + G+ + N ++ + + + Sbjct: 310 GEKLISKAFSEKVIDGGEIFISNKIFGDKTAKSFIS-GFTKINTDEAITLNNIKYNIYDN 368 Query: 349 DVCLEYIGK 357 ++ +E+ K Sbjct: 369 NIGVEFYFK 377 >gi|163742965|ref|ZP_02150348.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis 2.10] gi|161383648|gb|EDQ08034.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis 2.10] Length = 372 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 133/362 (36%), Positives = 190/362 (52%), Gaps = 11/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DARFMS AL R +G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG Sbjct: 9 PEDARFMSLALSLGRRGLGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAG 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YV+LEPCSH G++PPCAQ +I G RVV ++D D RVSG G L GI Sbjct: 69 DLARGATVYVSLEPCSHTGKTPPCAQALINAGAARVVAAIEDSDPRVSGHGFAMLRDAGI 128 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + + + + R +TLK+A S D I A S ITG ++ V Sbjct: 129 PVTTGVCSDVAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAV 188 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +RA+ DA++VG GT ADDP LT R G+ P+R+++ H L L ++ ++A Sbjct: 189 HAMRARHDAVMVGGGTARADDPSLTVRDLGV-ARQPVRVVISRHLDLPLMGQLARSARDI 247 Query: 244 PVIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAV 298 PV I D A+ ++ C L+ +L L G+T + EGG+A+ Sbjct: 248 PVWICHGAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSAL 307 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A S + LVD +I + + + IG G+ S L+ F + G+D+ + Sbjct: 308 AASLLAQDLVDELIGFTAGLGIGGDGLSSIGSLGLDTLAEAPRFDLIDVRPVGADIQHRW 367 Query: 355 IG 356 Sbjct: 368 TR 369 >gi|240124968|ref|ZP_04737854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae SK-92-679] gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-92-679] gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-92-679] Length = 369 Score = 341 bits (874), Expect = 1e-91, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G+ Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGIGSGLFCLPENRAALSAPPLWTPVSTEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|251771354|gb|EES51935.1| riboflavin biosynthesis protein RibD [Leptospirillum ferrodiazotrophum] Length = 397 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 132/377 (35%), Positives = 189/377 (50%), Gaps = 20/377 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P D R+M AL + + NP V ++V+DG V+G G G HAEV AL Sbjct: 5 PGEPADRRWMQRALVLAEKGRDTVAPNPMVGAVVVRDGKVVGEGYHREAGQEHAEVLALR 64 Query: 62 EAGEEARGATAYVTLEPCSHY-GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARGAT YV LEPC H R+PPC + I++ G+ RVVV + DP+ RV GRGL+ L+ Sbjct: 65 AAGDRARGATLYVNLEPCCHVEKRTPPCTEAIVQAGVARVVVAMRDPNPRVFGRGLERLA 124 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + + + + + + + + + R ++TLK A+S D I + S I+G S Sbjct: 125 GQRLDVSEGLFAARAFEQNRGFSSLIRQGRPYVTLKGAMSLDGKIATSTGDSQWISGSRS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H LR DAILVGI T + DDP LT RL G + H P R+ILD +L DS++ Sbjct: 185 LAYAHRLRRDHDAILVGISTAMKDDPRLTNRLPGSRSHQPARVILDSTGRLPPDSRLFGE 244 Query: 240 ALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293 PV +V P +L K I+ DL+ LL +L G+ ++LVE Sbjct: 245 EGGGPVFLVAGPRAPERSLRQLEKSGARILVLPEVRTGEIDLRALLAVLAEEGLLTVLVE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIG--------EGGIPSPLEEGYLEKNFMCVRRDY 345 GG+ V SF+ + LVD I + + ++IG G P L F +RR Sbjct: 305 GGSRVNASFLAAGLVDRIRVVLAPLLIGGTDAIGWLGGASPPTLARARRLPGFSVIRR-- 362 Query: 346 FGSDVCL--EYIGKNLC 360 G D+ + ++ G N Sbjct: 363 LGDDLLVGADFWGPNSL 379 >gi|326538505|gb|ADZ86720.1| riboflavin biosynthesis protein RibD [Brucella melitensis M5-90] Length = 373 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 167/356 (46%), Positives = 228/356 (64%), Gaps = 7/356 (1%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E GE AR Sbjct: 17 RFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEVGEAAR 76 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI +V Sbjct: 77 GATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEVVP 136 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + L YL R KR + LK+A+S D MIG G G V ITG +S+ Q H+LR Sbjct: 137 GILSEQAADDLAGYLNRSARKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHILR 196 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 AQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L S+++++A P+ + Sbjct: 197 AQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPLSSRLVRSADTQPLWV 256 Query: 248 VTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + P A I+ + D L +LL L +G+ S+LVEGGA VA SF Sbjct: 257 ACGEEAPDERRAALGAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAKSF 316 Query: 303 INSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 317 LDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58] gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58] gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385] Length = 369 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 185/366 (50%), Gaps = 13/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVC 351 + + +F+ L D I+LYRS ++G G L E + V + G ++ Sbjct: 300 SELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIK 359 Query: 352 LEYIGK 357 + Sbjct: 360 TVFRKN 365 >gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240355] Length = 361 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 185/360 (51%), Gaps = 13/360 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T +P I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDGQSPTYIA 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T + +R+ I DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + L D I+LYRS ++G G +P + V + G D+ + + Sbjct: 299 LAEDLADEIVLYRSPKILGSGKDLLSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKND 358 >gi|49474161|ref|YP_032203.1| riboflavin biosynthesis protein ribD [Bartonella quintana str. Toulouse] gi|49239665|emb|CAF26036.1| Riboflavin biosynthesis protein ribD [Bartonella quintana str. Toulouse] Length = 365 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 218/366 (59%), Gaps = 13/366 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGE 65 M+AA+R + H+GLT NPSV +I ++ ++G GVTA G PHAEVQAL AG Sbjct: 1 MAAAIRLAERHIGLTGENPSVGTIIARNDDSRGRCIVGYGVTAIHGRPHAEVQALHMAGP 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPCSHYG++ PC +I GI RVVV + D D RV GRG+ L GI Sbjct: 61 LARGATAYVTLEPCSHYGKTLPCVNALINSGISRVVVALTDLDKRVDGRGIALLRAAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++ E L Y + +R +T K+A+S DN +G G G++ I+G S H Sbjct: 121 VVEGVLAEEAFEALCTYWCIRKLQRCAVTFKMAISADNGVGKKGQGAIKISGMTSHTHTH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +LRAQ++AILVG+GT+L DDP+L+CRL G++ SP+RIILD + LD+K+++TA P Sbjct: 181 ILRAQNNAILVGVGTILVDDPQLSCRLPGMERRSPIRIILDADLCIPLDAKVVQTAKTIP 240 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 ++ + A + +++ + + +L +L RG+ S+L+EGG Sbjct: 241 TWVICDVNFSKKSKKSALEQCGVSVYSVEMSNGYMQPLAILRLLYQRGINSVLLEGGVKT 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F+N+ VD +I + + +++G+ I +P YL + F V FG+D C ++ K Sbjct: 301 GEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ-FYEVETRMFGNDRCYKWRRKT 359 Query: 359 LCLQEL 364 LC QEL Sbjct: 360 LCSQEL 365 >gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus VM223] gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus VM223] Length = 367 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELSLYQTP--SPVLRVASENADLCISAENGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 350 CRMVGADLRVIATPKS 365 >gi|156973476|ref|YP_001444383.1| pyrimidine deaminase [Vibrio harveyi ATCC BAA-1116] gi|156525070|gb|ABU70156.1| hypothetical protein VIBHAR_01166 [Vibrio harveyi ATCC BAA-1116] Length = 374 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 179/367 (48%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ Sbjct: 10 FTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L Sbjct: 70 AGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ESE ++ +I LK+A S D ++ S IT ++ Sbjct: 130 GVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R L + P R+I D +L Sbjct: 190 DVQRYRALSCGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 S D K+ T IIV++ D V L + DL L + G + Sbjct: 250 SDDLKLFNTDGER--IIVSQGSDMVPELGENGQ---------IDLAATLRNVASGYHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|153009855|ref|YP_001371070.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC 49188] gi|151561743|gb|ABS15241.1| riboflavin biosynthesis protein RibD [Ochrobactrum anthropi ATCC 49188] Length = 373 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 166/363 (45%), Positives = 232/363 (63%), Gaps = 7/363 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 ++ D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL Sbjct: 10 NATADDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTAIGGRPHAEPQALA 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSGRG L + Sbjct: 70 DAGEVARGATAYVTLEPCAHHGRTPPCAEALVRAGVARVVVAATDPDERVSGRGFAILRE 129 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V ++ + L YL R +KR + LK+A+S D MIG G G + ITG +++ Sbjct: 130 AGIEVVPGILAEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQLAITGPVAR 189 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 Q H+LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L L SK+++TA Sbjct: 190 AQSHILRAQTDIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDSGLRLPLSSKLVQTA 249 Query: 241 LLAPVIIVTENDD-PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 P+ I + P + I+ + D L +L+ L +G++S+LVEGG Sbjct: 250 DAQPLWIACGEEALPERRYELQAAGCRILATEAYDCRIALPELMDDLAAQGISSVLVEGG 309 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A VA SF++ LVD + ++RS + IG G+ E ++ F +R+ +G D EY Sbjct: 310 AGVAKSFLDEGLVDRLAIFRSPVEIGSELGVAVDGLETHIADKFKILRQARYGDDAYTEY 369 Query: 355 IGK 357 + K Sbjct: 370 VRK 372 >gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 369 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 183/357 (51%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M ++ + +L+R + +K+ S D +A S ITG ++ Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTVLAD+P +T RL P+R++LD + + I Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + + AL + + DL +L +L RG+ + VE GA ++ + Sbjct: 248 -APTLYLHGDAVAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P G G D+ L Y Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRY 363 >gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM573] gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM573] Length = 367 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVQIGLLEADARALNSGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENADLCISAENGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 350 CRMVGADLRIIATPKS 365 >gi|16331497|ref|NP_442225.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803] gi|2833460|sp|Q55158|RIBD_SYNY3 RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1001153|dbj|BAA10295.1| riboflavin biosynthesis protein [Synechocystis sp. PCC 6803] Length = 368 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 170/349 (48%), Gaps = 8/349 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D M L ++ +G T+ NP V +IV+ ++G+G G PH E+ AL EAG+ Sbjct: 4 DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEAGDR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YV LEPC+H GR+PPC + II+ GI +VVV + DP+ V+G+G+ L Q GI + Sbjct: 64 AKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + A+ R +R K A++ D I A S +T +++ VH Sbjct: 124 KVGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+Q A+++G TV D+P LT G+ E +P+R++L L +++++ + + Sbjct: 184 LRSQCQAVIIGGNTVRRDNPLLTNH--GVGEVNPLRVVLSRSLDLPIEAQLWDQDVAKTL 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + D K + + + ++ L R +L E G +A I Sbjct: 242 VITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQRNCLQVLWECGGILAAEAIAM 301 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 V + + + +IG P+P+ E ++ N + G D Sbjct: 302 GTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLTDLHCQAIGPD 350 >gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 369 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 183/357 (51%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M ++ + +L+R + +K+ S D +A S ITG ++ Sbjct: 129 IEVLSGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTVLAD+P +T RL P+R++LD + + I Sbjct: 189 VQRWRARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + + AL + + DL +L +L RG+ + VE GA ++ + Sbjct: 248 -APTLYLHGDAIAATALNGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P G G D+ L Y Sbjct: 307 LLQAGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRLRY 363 >gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato Max13] gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato K40] gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 378 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 185/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL E Sbjct: 5 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL++L+ L RGV Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + + Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|269103255|ref|ZP_06155952.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photobacterium damselae subsp. damselae CIP 102761] gi|268163153|gb|EEZ41649.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photobacterium damselae subsp. damselae CIP 102761] Length = 378 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 189/368 (51%), Gaps = 20/368 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+FD + MS A+ ++ T+ NP+V C+IV +G ++G G G PHAEV AL Sbjct: 2 FSAFDHKMMSRAIALAKKGRFTTAPNPNVGCVIVNNGQIVGEGFHYRAGLPHAEVFALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSHYGR+PPCA +IE GI RVV + DP+ +V+G G+ L Sbjct: 62 AGDKARGATAYVTLEPCSHYGRTPPCALALIEAGISRVVCAMVDPNPKVAGNGVTLLQNA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E + K ++ ++ LK+A S D +A S ITG ++ Sbjct: 122 GVTVEVGLLEQDAKALNLGFIKAMQTGMPYVQLKMASSLDGRTALANGESKWITGPQARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230 V RAQ+ AIL TV+ADDP + R L + P+R+I+D +L Sbjct: 182 DVQHFRAQAGAILSTSATVIADDPSMNIRWQELPFYIQQQYPKSELRLPIRVIIDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTS 289 S D ++ ++ E D V + + I DL +LL LV G+ Sbjct: 242 SPDYQLFHLPGK-TLLARCEQGDEVWPDSVTQLIISRTPDSSQLDLHELLQQLVKLGIYH 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRD 344 + VE GA +A + + ++LVDS ILY++ ++G +P G + N Sbjct: 301 IWVEAGAGLAGALVQNQLVDSFILYQAPKLMGAEARGVMNLPQLTAMGQVP-NVSISDLR 359 Query: 345 YFGSDVCL 352 G+D+ + Sbjct: 360 MVGTDIRI 367 >gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria gonorrhoeae TCDC-NG08107] Length = 361 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 183/358 (51%), Gaps = 11/358 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239 Query: 249 TENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E D+ L +I I+ DL L+ +L G ++VE G+ + +F+ Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L D I+LYRS ++G G +P + V + G D+ + Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSTEILGHDIKTVFRKN 357 >gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Janthinobacterium sp. Marseille] Length = 363 Score = 340 bits (872), Expect = 2e-91, Method: Composition-based stats. Identities = 121/358 (33%), Positives = 182/358 (50%), Gaps = 17/358 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL +A Sbjct: 6 DVQGIRLALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQALNDAADR 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + G+T YVTLEPCSH+GR+PPCA +I+ + RVV + DP+ V+G+GL L G Sbjct: 66 GFDVSGSTVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLARLEAAG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E+E + +L+R + + +K A S D M + S ITG ++ Sbjct: 126 IQVSCGVLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ AIL GIGTV+ DDP+LT R P RI++D H ++S ++++ Sbjct: 186 GHYWRARACAILTGIGTVMEDDPQLTVRAID-TPRQPQRIVIDSHLQISPHARVLSGGG- 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298 +IV +P R II DL L+ L R + L VE G + Sbjct: 244 --TLIVAAQANPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAGFKL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 S I VD +++Y + ++G+ +P PLE +KN G+D+ + Sbjct: 302 NGSLIREGCVDELLVYLAPTLLGDAQRMFNLP-PLESLEHKKNLTFHEVKQIGADLRI 358 >gi|310779807|ref|YP_003968139.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM 2926] gi|309749130|gb|ADO83791.1| riboflavin biosynthesis protein RibD [Ilyobacter polytropus DSM 2926] Length = 359 Score = 340 bits (872), Expect = 3e-91, Method: Composition-based stats. Identities = 109/361 (30%), Positives = 182/361 (50%), Gaps = 11/361 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL+ + G + NP V ++VK+G ++G G G PHAEV AL EAG Sbjct: 1 MDKKYMETALKLALKGEGNVNPNPMVGAVVVKNGTIVGEGYHKQYGGPHAEVYALNEAGS 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E RGAT YVTLEPCSHYG++PPCA+ IIE GI++ V+ DP+ V+GRG++ L + GI Sbjct: 61 ECRGATIYVTLEPCSHYGKTPPCAEKIIEMGIKKCVIACLDPNPLVAGRGVKILERAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +ME E ++ ++ + LK A++ D I S IT +S+ +V Sbjct: 121 VEVGLMEKEALELNRVFMKYITTEKPFVFLKCAITLDGKIAARTGSSKWITNEVSREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VG T++ D+P L R+ G + P RI++DP + DS Sbjct: 181 RLRHRFMGIMVGANTLVMDNPRLNARIEG--GNDPFRIVIDPELIVPSDSNFASMKDGKS 238 Query: 245 VIIVTE-NDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301 +I+ +E N D + + + + K +L + + S+L+EGG+ + Sbjct: 239 IIVTSEKNKDSEKVSLLEARGVRFAWLPGDEFKISDILKKVGELKIDSVLLEGGSYLISK 298 Query: 302 FINSRLVDSIILYRSQIVIGE-GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +D ++ + ++G+ GIP + V+ + +G+++ +E+ Sbjct: 299 AFEENAIDGGEIFIAPKILGDQKGIPFIKGFSFDSIEEAFELKNVKFNQYGNNISVEFYK 358 Query: 357 K 357 Sbjct: 359 D 359 >gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815] gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815] Length = 373 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 186/368 (50%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T NP V C++VK+G VIG G T G HAE+QAL++ Sbjct: 2 FSQTDFVHMERALALAWRGLYTTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + +GATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ RVSGRGL L Sbjct: 62 ARKRGHDLQGATAYVTLEPCSHFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E++ + +++R R + +K+A S D G+ S IT Sbjct: 122 REAGIEVRCGLLENDARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++N H RA++ AIL GIGTV D+P +T R P R+++D ++ D++I+ Sbjct: 182 ARNDGHAWRARASAILTGIGTVKEDNPRMTVRAVD-TPRQPHRVLIDSQLEVPPDAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP ++ P A + I+ DL ++L L R V L Sbjct: 240 --AGAPTLVFCSTLSPLLTERAAVLHDRGAEIVPLANENGKVDLPRMLEELGKREVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G P L + + F V D Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYVAPSLLGNDSMSMFNLAAPGSL-DARTQLEFHAV--D 354 Query: 345 YFGSDVCL 352 GSDV + Sbjct: 355 RIGSDVRI 362 >gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena XCL-2] gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiomicrospira crunogena XCL-2] Length = 391 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 201/378 (53%), Gaps = 25/378 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD + M A+ +R + T NP+V C+I + +I G G PHAE AL Sbjct: 9 FSDFDVQMMQRAIDLARKGLYSTKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALAN 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E +GAT YVTLEPCSH+G++PPCA +++ G+ RVV+ + DP+ V+G G++ L Q Sbjct: 69 ATESVKGATVYVTLEPCSHHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQA 128 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI+VD ++ E +++ R + LK+A S D MA S ITG +++ Sbjct: 129 GIVVDSGILSEEAAALNKGFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARH 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHS--PMRIILDPHFKLSL 232 QVHL+RAQ AI+ G+GTVLADDP L RL+ GL + P+R++LD + L Sbjct: 189 QVHLMRAQHGAIVTGVGTVLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPL 248 Query: 233 DSKIIKTALLAPVIIVTEND----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVG 284 D+K++ +L +++T + + L F +K +I D D+ +L+ LV Sbjct: 249 DAKML--SLPGRTLLMTSKETVDQNLDLIERFYQKGAEVIAVESDGDKLDIPSVLSYLVE 306 Query: 285 -RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFM 339 + ++VE GA VA +FI + +V+ + ++ + I++GE P + G E K F Sbjct: 307 SENIYDVMVEAGAIVAGAFIQADVVNELHVFTAPILMGEMAKPMFVLPGLTEMADKKVFA 366 Query: 340 CVRRDYFGSDVCLEYIGK 357 G D+ L K Sbjct: 367 YQSVQALGEDLYLVLTPK 384 >gi|6572106|emb|CAB63090.1| riboflavin-specific deaminase / reductase [Bartonella henselae str. Houston-1] Length = 363 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 147/364 (40%), Positives = 222/364 (60%), Gaps = 13/364 (3%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCPHAEVQALEEAGEEA 67 AA+R + HVGLT NPSV +I ++ ++G GVTA G PHAEVQAL+ AG A Sbjct: 1 AAIRLAERHVGLTGENPSVGTIIARNDENVGVYIVGYGVTAIQGRPHAEVQALQMAGSLA 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GATAYVTLEPCSHYG++ PC +++ GI RVV+ + D D RV+GRG+ L GI ++ Sbjct: 61 HGATAYVTLEPCSHYGKTSPCVNTLLKSGISRVVIALTDLDKRVNGRGIALLRAAGIEVI 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + ++ E L Y + ++R +TLK+A+S DN +G G G + I+G S Q H+L Sbjct: 121 EGVLAKEAFESLCNYWCIRKQQRCAVTLKMAISADNGVGKKGQGGIKISGTTSHAQTHIL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RAQ++AILVGIGT+LADDP+L CRL G++ HSP+RIILD + + L++K+++TA + P Sbjct: 181 RAQNNAILVGIGTILADDPQLNCRLPGMEMHSPIRIILDANLCIPLNAKVVQTAKIIPTW 240 Query: 247 IVTEN--DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ + +A + +++ + + +L +L RG+ S+L+EGG Sbjct: 241 VICDVNFSKKSKKIALEQYGVSVYSVEVSNGYMPPLTILQLLYQRGINSVLLEGGVKTGE 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 F+N+ VD +I + + +++G+ I +P YL + F V FG D ++ K LC Sbjct: 301 IFLNAGCVDHLICFYAPVILGKDRIKAPHFGNYLSQ-FHEVETRMFGKDRFYKWRRKTLC 359 Query: 361 LQEL 364 QEL Sbjct: 360 SQEL 363 >gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002] gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002] Length = 383 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 194/367 (52%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL ++ + T NP V C++V++G VIG G T G HAE++AL++ Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE I RV+ ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++ +E + +++R R + +K+A S D G+ S IT Sbjct: 122 REAGIEVRCGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P +T R P R+++D + LD++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDNPRMTVRAVD-TPRQPHRVLIDSQLDVPLDAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291 AP +I D A+A R++ I+ DL ++L++L R V L Sbjct: 240 --AGAPTLIFCGELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345 VE G + S + VD +++Y + ++G + SP L E ++ NF V R Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVER-- 355 Query: 346 FGSDVCL 352 G D+ + Sbjct: 356 IGDDLRI 362 >gi|209548782|ref|YP_002280699.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534538|gb|ACI54473.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 404 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 186/402 (46%), Positives = 240/402 (59%), Gaps = 46/402 (11%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSVTPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVVVGQAVTAVGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGAAARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E++G+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIEVDAGVLEADGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVQT 240 Query: 240 ALLAPVIIVTEN---------------------------------------------DDP 254 A PVI+V D Sbjct: 241 ARDVPVIVVASEEISPSGSEEGLSPSALGANPQPISPLVGEMSGRTEGGATLPAAAMDLD 300 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD I LY Sbjct: 301 SRRTALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLY 360 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 ++ +VIGEGGI SPL+ + F FG D EY Sbjct: 361 QAPVVIGEGGIESPLDATDIPPGFAQTGTQMFGEDRLDEYER 402 >gi|78188601|ref|YP_378939.1| riboflavin biosynthesis protein RibD [Chlorobium chlorochromatii CaD3] gi|78170800|gb|ABB27896.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium chlorochromatii CaD3] Length = 366 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 183/366 (50%), Gaps = 18/366 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP +M AL + G S NP V L+V++G +IG G G HAEV A+ Sbjct: 1 MPALEH-TFYMQRALELALRGAGRVSPNPMVGALLVQEGEIIGEGWHERYGEAHAEVNAI 59 Query: 61 EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 EA R AT YVTLEPCSH+G++PPC+ II I RVVV DP V+GRG+ Sbjct: 60 AAVTNEAWLREATLYVTLEPCSHFGKTPPCSDLIIAKQIPRVVVGCRDPFPAVAGRGIAK 119 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI +++ ++E+E A++ +TLK+A + D + S ITG Sbjct: 120 LRAAGIEVIEGVLEAECLQSNEAFIKSHTVGLPFVTLKLAQTLDGKLATVTGASRWITGE 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ +VH LR+ DA+LVG T LAD+ +LT R +P+R++LD +L L+S I Sbjct: 180 EARAEVHRLRSVYDAVLVGGATALADNSQLTVR--QANGRNPLRVVLDRSLQLPLESLIF 237 Query: 238 KTALLAPVIIVT--ENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLL 291 AP ++ T A +K +++ + L+++L L R + S+L Sbjct: 238 N--HEAPTLLFTSLSQQHSPKVEALQKLGVSVHAVSESAEGLQLREVLEELHHRHILSVL 295 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFG 347 VE G+ + + + + VD ++++ + + G G+ + G + R +FG Sbjct: 296 VESGSRLGAALLQAGFVDKLLIFIAPKLFGGDGLSAFAPLGVTVPDEAIALRFELPRFFG 355 Query: 348 SDVCLE 353 D+ LE Sbjct: 356 KDLLLE 361 >gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. HL-EbGR7] gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. HL-EbGR7] Length = 369 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 118/333 (35%), Positives = 182/333 (54%), Gaps = 13/333 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R M+ AL+ +R + T NP V C++V+DG V+G G G PHAE+ AL +A Sbjct: 3 TETDTRHMARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILALRQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGAT YVTLEPC+H+GR+PPCA +I G+ RVV + DP+ RV+G+GL L+ G Sbjct: 63 GEAARGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLTAAG 122 Query: 124 IIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++E+E + +++R + R ++ +K+A+S D MA S ITG ++ Sbjct: 123 ITTASGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAARRD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN------GLQEHSPMRIILDPHFKLSLDSKI 236 V LRA++ AIL G GTVLAD+P L RL+ P+R++LD + ++K+ Sbjct: 183 VQRLRARAGAILTGSGTVLADNPGLDVRLSAQELGIEGPVRQPLRVVLDTRLACTPEAKL 242 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLV 292 T P +++T D + + DL +L +L RG+ L V Sbjct: 243 FTTG--GPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINELHV 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 E G + S + + LVD +++Y + ++G Sbjct: 301 EAGPILCGSLMQAGLVDELVIYMAPHLMGNDAR 333 >gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] Length = 369 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 184/365 (50%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S + M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTNISMMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAKGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L +S ++ Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQ 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I E D+ L +I I+ DL L+ +L G ++VE G Sbjct: 241 SPTYIATLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGC 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ L D I+LYRS ++G G +P + V + G D+ Sbjct: 301 ELTSAFLAENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKT 360 Query: 353 EYIGK 357 + Sbjct: 361 VFRKN 365 >gi|318042152|ref|ZP_07974108.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CB0101] Length = 359 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 184/358 (51%), Gaps = 9/358 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 +SS +M AL+ + G TS NP V C+++ + G ++G G G PHAEV AL Sbjct: 1 MSSPWRPWMQRALQLAALGNGRTSPNPLVGCVVLDRAGQLVGEGFHQRAGTPHAEVHALR 60 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE ARG TA VTLEPC H+GR+PPC++ ++ G+ RVVV + DPD RV+G+GL L Sbjct: 61 QAGERARGGTAVVTLEPCCHHGRTPPCSEALLAAGVARVVVAMRDPDPRVAGKGLAQLRD 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ +++ + E+E +I +L R + R LK A+S D + S I+G ++ Sbjct: 121 AGVDVLEGVCEAEARILNRGFLHRVEQGRPLGLLKWAMSLDGRTALPNGSSQWISGPPAR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRAQ DA++VG GTV AD+P LT R G + P+R+++ L +++ + Sbjct: 181 AWVHHLRAQCDAVIVGGGTVRADNPLLTSR--GQRTPEPLRVVISRSLDLPKQAQLWNQS 238 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 A +++ + + + + + + +LL L RG +L E G +A Sbjct: 239 EAATLVVHSSSAPAEQLDRLDGLGVERLVLERCEPLELLEALGQRGCNQVLWECGPELAA 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353 + + V + + ++G +PL + L + R G+D LE Sbjct: 299 AALRQGCVQQVAAVLAPKLLGGTAARTPLGDLGLVDVNQAVAWSRSRLQQLGNDCLLE 356 >gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis RibD oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein [Xanthomonas albilineans] Length = 369 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 122/326 (37%), Positives = 178/326 (54%), Gaps = 4/326 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ ALR + T NP V C+IV+D +G G G PHAEV AL Sbjct: 4 FSAADHRWMAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFALRA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVVV + DP +V+G G L + Sbjct: 64 AGEYARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME + + +L+R R + +K+ S D +A S ITG ++ Sbjct: 124 GIAVQSGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAAARQ 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G GTVLADDP LT RL E P+R++LD + SK+ A Sbjct: 184 DVQRWRARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRTLARSKVRDGA 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + + L + ++ DL +L +L RG+ + VE GA + Sbjct: 244 --APTLYLHAPASVPPTLPNAEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGATLGG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP 326 + + + +VD +++Y + +++G+ P Sbjct: 302 ALLRAGMVDEVLVYLAPVLLGDAARP 327 >gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703] gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703] Length = 372 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 190/365 (52%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ VSG+GL L Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R + P RI+LD ++ LD ++ Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L + ++I II +L L+ L G +LVE G+ Sbjct: 241 SPTVIVTLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ LVD I+LY++ ++G G +P + + + G D+ Sbjct: 301 TLTSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWQSQSVEIIGQDIKW 360 Query: 353 EYIGK 357 K Sbjct: 361 VLRKK 365 >gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 378 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL E Sbjct: 5 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL++L+ L RGV Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + + Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia gladioli BSR3] gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia gladioli BSR3] Length = 372 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 187/368 (50%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL S + TS NP V C+IVKD +VIG G T G HAEVQA+++ Sbjct: 2 FSESDFAHMQRALDLSSRGMYTTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ VSG+GL L Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E + +++R + + +K A+S D + S ITG Sbjct: 122 RDAGIEVRCGLLAQEAREMNIGFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+LT R P+R+++D ++SL++K++ Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPLRVLVDSRLEVSLEAKLLS 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A A R + ++ DL LL L RG+ L Sbjct: 241 G---APILIFCGELDAAGEGRAAALRDRGAEVVPLAGPNGKVDLPALLQALGKRGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G+ P+ LE+ D Sbjct: 298 VEAGHKLNGSLLREGCVDELLIYVAPTLLGDNAAGMFNLAAPATLEQ---RTRLQFHTID 354 Query: 345 YFGSDVCL 352 G ++ + Sbjct: 355 RIGDELRI 362 >gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato str. DC3000] gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tomato str. DC3000] Length = 381 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL E Sbjct: 8 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L Sbjct: 68 AGELARGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 128 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 188 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 247 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL++L+ L RGV Sbjct: 248 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 304 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + + Sbjct: 305 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 364 Query: 346 FGSD 349 G+D Sbjct: 365 VGND 368 >gi|21673577|ref|NP_661642.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS] gi|21646689|gb|AAM71984.1| riboflavin biosynthesis protein RibD [Chlorobium tepidum TLS] Length = 373 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 176/363 (48%), Gaps = 13/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M L + G S NP V +IV G VIG G G PHAEV A+ Sbjct: 11 PEDETYMWRCLELAERGAGSVSPNPMVGSVIVCAGRVIGEGWHRQYGGPHAEVDAIASVE 70 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E R +T YV LEPCSHYG++PPCA I+E I RVVV DP +V+G+G+ L + Sbjct: 71 DESLLRQSTLYVNLEPCSHYGKTPPCADLIVEKRIPRVVVGCLDPHEKVAGKGIARLREA 130 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + A++T + R + LK A + D I + S ITG S+ Sbjct: 131 GIEVTVGVLEAESERLNEAFMTSHRKGRPFVALKTAQTLDGRIATSLGASKWITGEESRC 190 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QVH LR DA+L G TVLAD+ ELT R P+R++LDP ++ + +I A Sbjct: 191 QVHRLRCIYDAVLCGASTVLADNTELTVRFCA--GRQPLRVLLDPRLQVPHEFRIFNDAA 248 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 V + E DP L + I + D ++ L R + S+LVEGG+ Sbjct: 249 KTLVFALREEADPDLVRQLEARGIEVATVGEAEGSLDFAEVFAELHKRRLLSVLVEGGSR 308 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV----RRDYFGSDVCLE 353 +A + + S VD ++ + + G G+ S G ++ FG D+ LE Sbjct: 309 LASAMVRSGFVDKYYVFIAPKLFGGDGLASFGALGVTHPDYAVKLSFSGIRRFGEDLLLE 368 Query: 354 YIG 356 Sbjct: 369 AYP 371 >gi|108757223|ref|YP_632926.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622] gi|108461103|gb|ABF86288.1| riboflavin biosynthesis protein RibD [Myxococcus xanthus DK 1622] Length = 387 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 185/363 (50%), Gaps = 11/363 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + +G TS NP V ++VK G +I RG G HAEV ALE AG A Sbjct: 29 EFFMRIALEEAAKGLGRTSPNPVVGAVLVKGGRIIARGYHKKAGSAHAEVVALEAAGARA 88 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GA Y TLEPC HYGR+PPC+ IIE G+RRV+ DP+ +VSG+G+ + + G+ ++ Sbjct: 89 KGADLYTTLEPCDHYGRTPPCSMAIIEAGVRRVICASADPNPKVSGKGVSRMRRAGLKVL 148 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ + + +TLK AV+ D + A S +TG ++ VH L Sbjct: 149 TGVLAEDADRLNRPFFKMIRTGLPWVTLKAAVTLDGKLATATGDSRWVTGAPARAWVHRL 208 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R D ILVG TV DDP+LT RL G P+R+++D H +LS I A + Sbjct: 209 RDSVDVILVGANTVRKDDPKLTTRLPGGGGKDPLRVVVDSHLRLSPGYTIFTQRSAARTV 268 Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T E+ + A F + +++ + DLK LL L G ++VEGGA + S Sbjct: 269 VATLEDPEGRKARRFLAQGVDVWQLREKAGQVDLKALLRRLAKGGHNHVMVEGGAEMYGS 328 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ RL DS+ L+ + +IG G+ + G E + D+ E G ++ L Sbjct: 329 FLRGRLADSLALFLAPKLIGSPGLSWAGDLGVKEMAQALAVK-----DLAFERHGDDILL 383 Query: 362 QEL 364 Q L Sbjct: 384 QAL 386 >gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str. 'Deep ecotype'] gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str. 'Deep ecotype'] Length = 379 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 177/370 (47%), Gaps = 24/370 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M+ A++ + TS NP V C+IV D ++G+G G PHAEV AL +A Sbjct: 9 DYYWMAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQAAH 68 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E A+GATAYVTLEPCSH+GR+PPCA+ ++E + RVV+ + DP+ V G G+ L + Sbjct: 69 ARSEGAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISMLQE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +V +M +E ++ R + + + +K+ +S D I + S IT ++ Sbjct: 129 AGIEVVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSL 232 V RAQS +L G GTV AD+P L R Q P R+++D LS Sbjct: 189 RDVQHYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTLSR 248 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLL 291 D + + T P A + + + D + DL L+ L + + Sbjct: 249 DFALFNDGNM--TFTATSQAHPDTAS---QHYLQLDEKDGKLDLHALMLALGDKQFNEVW 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347 VE G +A + + LVD +I Y++ ++G+ G+ + N + G Sbjct: 304 VEAGPGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTALNQSISLSLIENRQVG 363 Query: 348 SDVCLEYIGK 357 +D+ L + Sbjct: 364 NDIKLIFRPD 373 >gi|257453179|ref|ZP_05618478.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. 3_1_5R] gi|317059713|ref|ZP_07924198.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 3_1_5R] gi|313685389|gb|EFS22224.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. 3_1_5R] Length = 359 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 110/359 (30%), Positives = 183/359 (50%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V+G+G+ + GI + Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVAGKGISMMRDAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+E + +L K + LK ++ D + S IT I++ +V Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRNFQSKWITNEIAREKVQK 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+ D+P L R+ P RII+DP+ ++ L SK++ V Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHRHDKKTV 240 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 II + + I+ + R ++L + G+ S+L+EGG + S Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 ++D ++ + ++G+ + + E V +G++ +E+ Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359 >gi|297617055|ref|YP_003702214.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus DSM 12680] gi|297144892|gb|ADI01649.1| riboflavin biosynthesis protein RibD [Syntrophothermus lipocalidus DSM 12680] Length = 364 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 128/359 (35%), Positives = 186/359 (51%), Gaps = 11/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D ++M A+ + +G TS NP V ++V +G V+G G G PHAE+ AL +AG Sbjct: 2 SIDEKYMGRAVELAVQALGRTSPNPVVGAVVVLEGEVVGEGYHQLAGTPHAEIHALNQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPC HYG++PPC II GI+RVVV + DP+ +VSG+G+ L GI Sbjct: 62 ERARGATLYVTLEPCCHYGKTPPCVDAIIGSGIKRVVVAIQDPNPQVSGQGIARLKAAGI 121 Query: 125 IVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + E + + + LK A++ D I S +TG ++ V Sbjct: 122 EVEVGVLEEEARRANEFFFKFITTGMPFVALKTAMTMDGKIATRTGDSRWVTGEKARRFV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR DA+LVG+GTVL D+P L RL+ + PMR+ILD ++ LDS+I+ T+ Sbjct: 182 HELRNIYDAVLVGVGTVLKDNPMLNTRLDVAGKRDPMRVILDGRLEIPLDSQIVLTSNQQ 241 Query: 244 PVIIVTE-NDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++VT D + ++ D L +L L GVTS+LVEGG V Sbjct: 242 CTLVVTSRKADIGKIAVLEDAGVEVLQLGDKPDFIPLVPVLEELARLGVTSILVEGGGQV 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352 SF+ + LVD + + + + G P+P+ +E + F DV + Sbjct: 302 NASFLEAGLVDKVYWFIAPKICGGESAPTPVRGTGVEMMDQARKLRQFDLSRFDDDVLI 360 >gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia R551-3] gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia R551-3] Length = 361 Score = 339 bits (869), Expect = 5e-91, Method: Composition-based stats. Identities = 125/356 (35%), Positives = 179/356 (50%), Gaps = 7/356 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D M+ ALR + T NP V C+I V+G+G G PHAEV AL Sbjct: 4 PFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L Sbjct: 64 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G TVLADDP LT RL + P+R++LD + S++ Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRV--RE 241 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + + A + DL +L +L RG+ + E GA +A Sbjct: 242 GGAPTLYLHAAAVSAPDAADAEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLAG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCL 352 + + VD ++LY++ ++G+ G P G ++ V + G D+ L Sbjct: 302 ALLRGGWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRL 357 >gi|163803478|ref|ZP_02197350.1| hypothetical protein 1103602000439_AND4_19771 [Vibrio sp. AND4] gi|159172738|gb|EDP57587.1| hypothetical protein AND4_19771 [Vibrio sp. AND4] Length = 375 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 177/368 (48%), Gaps = 28/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ Sbjct: 10 TFTSQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMR 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++ +GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV +DP+ +V+GRG Q L Sbjct: 70 MAGDKTQGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCATEDPNPKVAGRGFQMLRD 129 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + +++SE ++ +I LK+A S D ++ S IT ++ Sbjct: 130 AGVDVQVGLLQSEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKAR 189 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RA S IL TVLAD+ L R + L + P R+I D + Sbjct: 190 QDVQRYRALSGGILSSSKTVLADNASLNVRWDDLPKSVQTQYLKQDVRQPSRVIFDRQSQ 249 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVT 288 LS D K+ T IIV + D + DL L ++ + Sbjct: 250 LSDDLKLFNTDGER--IIVRQGGD---------ICPELDENGQIDLAATLKVVASECHIN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRD 344 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 299 HLWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVR 358 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 359 MVGVDIRI 366 >gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. actinidiae str. M302091] Length = 378 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 184/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL E Sbjct: 5 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GISVQCGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL++L+ L RGV Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + + Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 378 Score = 338 bits (868), Expect = 6e-91, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 185/364 (50%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL E Sbjct: 5 QAALDVHYMAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALRE 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + ++ R R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GISVQCGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + D DL++L+ L RGV Sbjct: 245 LDTPFFQAGSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + + Sbjct: 302 EVLVEAGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARPLLDLPLAQMSEALELNIIEIRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Vibrio sinaloensis DSM 21326] gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Vibrio sinaloensis DSM 21326] Length = 368 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 121/372 (32%), Positives = 189/372 (50%), Gaps = 29/372 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D + MS A+ ++ V T+ NP+V C+I ++ V+G G G PHAEV AL Sbjct: 4 FSSIDFQMMSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ DP+ +V+GRG++ L Sbjct: 64 AGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E ++ R ++ LK+A S D +A S IT ++ Sbjct: 124 GIEVEVGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQ 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA+S AIL TV+ D+ L R + L E P R+ILD KL Sbjct: 184 DVQQWRARSGAILSTSKTVIEDNASLNVRWSELPESIQQRYSQTDLRQPTRVILDRQNKL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 + D K+ + ++V+E+ + ++L +++ DL+ L L + Sbjct: 244 TPDLKLFHSPGER--LVVSEHGEVAMSLNEQQQ---------IDLEATLACLAQQHNINH 292 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 + VE GA +A S I +LVD +ILY + ++G L LE + + D Sbjct: 293 VWVEAGATLASSLIREQLVDELILYFAPKLMGSDSR-GLLGALGLESMTDVIDLNI--KD 349 Query: 350 VCLEYIGKNLCL 361 V +GK++ + Sbjct: 350 V--RQVGKDIRI 359 >gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT 12066] gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT 12066] Length = 366 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 187/364 (51%), Gaps = 23/364 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ + TS NP+V C+IV++G++IG G G PHAE+ A+ AG GA Sbjct: 1 MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSAGSSVAGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPCSHYGR+PPCA+ +++ G++RVV+ DP+ +V+GRG++ L GI VD + Sbjct: 61 TCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVDVGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E++ A+ V+ ++T+KI +S D I ++ S IT S+ V +RA Sbjct: 121 YENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKMRAA 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKLSLDSKIIK 238 SDAI+ G GTV+AD+P L R + L +E P+R++LD +++ D ++ Sbjct: 181 SDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDYVMF 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVE 293 V++V + D +++ I Y C + +L+ L R +LVE Sbjct: 241 --SQGKVLLVRPSLDSKNISEQINEHLEIFYAPCDFAGRICISAVLSELSKRQCRKVLVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349 G + SF+ RL D + L+ + V+G + + K + + G D Sbjct: 299 AGPTLVASFLQERLADELALFVAPKVLGVNAKTAFACDEVSSLDCLKPYKILTIKRSGKD 358 Query: 350 VCLE 353 + Sbjct: 359 FFVR 362 >gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SK82] gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SH164] gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SK82] gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens SH164] Length = 362 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 180/361 (49%), Gaps = 18/361 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AG Sbjct: 6 DQDYFYMRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+A+ ATAYVTLEPC+HYGR+PPCA+ +++ +++VV+ DP+ V+G+G+ L Q GI Sbjct: 66 EQAQDATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E+E +L ++ LK+A S D MA S ITG ++ V Sbjct: 126 EVESGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEH---SPMRIILDPHFKLSLDSKIIKT 239 RA S ++ GI TVL DD +L R L+G P R++LD +L L ++I+ + Sbjct: 186 QHWRAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILAS 245 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAV 298 V+ ++ +I + LK LL L + +LVE GA + Sbjct: 246 PEQLMVM---------GPFRQELADLGVIQLPLQPLKGLLQTLCNQYQIFDVLVEAGATL 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + +F+ +LVD +I Y + +G+ + + F G D+ L I Sbjct: 297 SSAFLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRLRLI 356 Query: 356 G 356 Sbjct: 357 P 357 >gi|110633489|ref|YP_673697.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mesorhizobium sp. BNC1] gi|110284473|gb|ABG62532.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chelativorans sp. BNC1] Length = 370 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 172/365 (47%), Positives = 232/365 (63%), Gaps = 10/365 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEV 57 P+S+ D RFM+AA+R SR H+GLT NPSV CLIV+D ++GR VTA GG PHAE Sbjct: 5 PISAHDRRFMAAAVRLSRRHLGLTGANPSVGCLIVRDDGEGPYIVGRAVTAIGGRPHAES 64 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 QALEEAGE ARGATAYVTLEPC+H+GR+PPC+ +I G+ RVV DPD+RVSG+G Sbjct: 65 QALEEAGELARGATAYVTLEPCAHHGRTPPCSLALIAAGVARVVGAASDPDLRVSGKGYS 124 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI +V+ ++ +E L YLTR +KR +TLK+A+S D IG G G V IT Sbjct: 125 MLRAAGIEVVEGLLAAEAADLLAGYLTRSTKKRPEVTLKVALSADMKIGREGQGQVRITE 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 I++ QVH++RA++DAIL+G GT LADDP LT RL GL+ SP RI+LD H +L DS + Sbjct: 185 AIARRQVHMMRAEADAILIGNGTALADDPLLTSRLPGLEARSPARIVLDRHLRLPPDSVL 244 Query: 237 IKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLL 291 + TA P+++ D D A + +I + D L + L L RG+++L+ Sbjct: 245 VSTAREVPLLVTAAQDVDSERRAALAAAGVELIGVEAFDGHIALPEFLEDLAARGISTLM 304 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGGA A F++ LVD + L+ + IG+ GI SP++ ++ F R FG D+ Sbjct: 305 VEGGAFTAREFLSEDLVDRLCLFVGRGKIGDEGIASPVDLDHIPSGFAKRREARFGEDLY 364 Query: 352 LEYIG 356 EY+ Sbjct: 365 FEYVR 369 >gi|224370210|ref|YP_002604374.1| RibD [Desulfobacterium autotrophicum HRM2] gi|223692927|gb|ACN16210.1| RibD [Desulfobacterium autotrophicum HRM2] Length = 381 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 191/362 (52%), Gaps = 13/362 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A+ + G T+ NP V ++VK+ V+G+G G HAEV A+++AG+ ARG Sbjct: 20 FMEQAICLAEQGRGYTAPNPMVGAVVVKNNQVVGQGWHKGPGLAHAEVNAIDDAGDLARG 79 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 + YVTLEPC+H GR+PPC + I+ GIRRV V +DP+ V+G G+++L ++G+ + Sbjct: 80 SDLYVTLEPCNHTGRTPPCTEKILRAGIRRVFVGTEDPNPFVAGGGIKFLKERGVAVKVG 139 Query: 129 MMESEGKIFLHAYLTR-QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + ++ + +K+ + LK A + D + S IT S+ VH LR Sbjct: 140 ICRRASETLIEDFIWYVKNDKQPFVVLKCAATLDGQLATRTGDSKWITNEASRKYVHRLR 199 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DAI+VG GT+ AD+P LT R+ P+R+ILD + DS++ A ++ Sbjct: 200 HWVDAIVVGAGTIRADNPSLTTRIENFDGRDPLRVILDAQLSIDPDSQVFTQQSSAKTMV 259 Query: 248 V-TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + DP F+ + I ++ + DL L L RGV SLL+EGG V HS Sbjct: 260 AISRRADPERCALFKHRGIELLVLPEKEGIIDLACLGEALGQRGVVSLLIEGGGRVVHSA 319 Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE-YIG 356 + + +V+ I L+ + ++G G+P G N V + F +D+ ++ Y+ Sbjct: 320 LAAGVVNKIYLFFAPKLLGGNDGVPMCRGRGPELMNDALGLSQVEVERFDNDILIKGYLK 379 Query: 357 KN 358 +N Sbjct: 380 QN 381 >gi|319651135|ref|ZP_08005268.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2] gi|317397189|gb|EFV77894.1| riboflavin specific deaminase [Bacillus sp. 2_A_57_CT2] Length = 365 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 9/353 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M A+ + G TS NP V ++VK+G ++G G G PHAEV A+ AGE+A Sbjct: 4 QEYMELAISLAAATKGQTSPNPQVGAVVVKNGEILGMGAHLKAGTPHAEVHAIAAAGEKA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GA YVTLEPCSH+GR+PPCA II GI RV + DP+ VSG+G++ + GI +V Sbjct: 64 KGADIYVTLEPCSHFGRTPPCADLIINSGINRVFIASADPNPLVSGKGIERMQDAGIEVV 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E + K ++T+K A S D S IT S+ VH L Sbjct: 124 TGLLKEEADALNEPFFHFIKTKTPYVTIKAASSFDGKTAAKTGDSKWITSPESRQDVHRL 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DAIL G+ T++ D+P LT RL +P+R++LD + ++ D+ +I+ + +I Sbjct: 184 RHEHDAILTGVNTIIHDNPLLTARLPQG-GKNPIRVVLDTNLRIPADANVIRDQSVKTII 242 Query: 247 IVTENDDPVLALAFRKKNINI--IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A +K N + + +K++L L R + +L VEGG+ + SFIN Sbjct: 243 FTGCEIDRSKAEELKKYNTEVFSFSANEVPIKEVLRNLGERNIMTLFVEGGSEIHASFIN 302 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352 S IILY + +IG + + G D+ + Sbjct: 303 SGFFQQIILYMAPKIIGGNKAIPFIGGDGANYVKDAPALEFTEIEKIGGDLRI 355 >gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627] gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627] Length = 361 Score = 338 bits (867), Expect = 8e-91, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 183/362 (50%), Gaps = 18/362 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL A E+A+GA Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEKAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R ++ LK+ S D MA S IT ++ V LRAQ Sbjct: 121 MMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R + L E P+RI++D +++ + +I++ Sbjct: 181 SHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHRIVQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +D + + Y DL L+ L + + S+ VE G + Sbjct: 241 QPGE--TWFARTQEDSRHWPETVRTLLIPEYNGHLDLVMLMMQLGKQQINSIWVEAGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 299 AGALLLAGLVDELIVYIAPKLLGSEARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHL 358 Query: 355 IG 356 +G Sbjct: 359 VG 360 >gi|90424160|ref|YP_532530.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisB18] gi|90106174|gb|ABD88211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris BisB18] Length = 383 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 148/364 (40%), Positives = 203/364 (55%), Gaps = 12/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D RFM AL R G T+ NP+V +IVKDG+++GRG T GG PHAE++AL AG Sbjct: 19 AADLRFMQLALSLGRRGQGRTAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEIEALNRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGAT YVTLEPCSH+G++PPCA +I G+ RVV ++DP+ +V+G+G L GI Sbjct: 79 LAARGATLYVTLEPCSHHGKTPPCADAVIAAGLARVVSAIEDPNPQVAGQGHARLRAAGI 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +E + R + R H+ LK+AVS D+ I ITG ++ +V Sbjct: 139 RVDVGLGAAEAAHDHAGHFRRVRDGRPHVILKLAVSSDDKIAATPGQPTAITGEAARARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ DAIL+GI T LADDP LTCRL G+++ SP+R++LD +L DS+++ +A Sbjct: 199 HLLRAQCDAILIGIRTALADDPLLTCRLPGMEKRSPVRVVLDRALRLPGDSRLVHSARST 258 Query: 244 PVIIVTENDDPVLALAFRKKNINII-------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ ++ A A I DL +L L G G+T LLVEGGA Sbjct: 259 PLWLLASEIAEAAAAAKLGAAGAQIIHVADCDAMPGLDLPAVLQALAGNGITRLLVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA S + + LVD + L R + IGEGG+ + PL F + G D Sbjct: 319 RVASSLVAADLVDEVWLLRGAMTIGEGGVAALDGLPLSVITAAAAFKIRTSETLGPDSLT 378 Query: 353 EYIG 356 Y Sbjct: 379 IYER 382 >gi|222148205|ref|YP_002549162.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis S4] gi|221735193|gb|ACM36156.1| bifunctional riboflavin deaminase-reductase [Agrobacterium vitis S4] Length = 366 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 234/362 (64%), Gaps = 11/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D RFM+AA+R R H+G T TNPSV C+IV DG ++G VTA GG PHAE QA+ AG Sbjct: 6 PDDQRFMAAAIRLGRSHLGQTLTNPSVGCVIVADGTIVGSAVTAIGGRPHAERQAIAVAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV V DPD RVSGRGL L+ GI Sbjct: 66 EKARGATAYVTLEPCSHHGKTPPCADALVEAGVARVVVAVTDPDPRVSGRGLSILTDAGI 125 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E E + L AYLTRQ ++R H+TLK+A+S+D MIG AG G V ITG +++ QV Sbjct: 126 EVVTGVLEREARYGLAAYLTRQTKQRPHVTLKLALSRDGMIGRAGEGQVAITGPLARTQV 185 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LLRA+SDAILVGIGT ADDP+LT RL G SP+RI+LD +L + SK+++TA Sbjct: 186 QLLRAESDAILVGIGTAKADDPDLTVRLAGQTHLSPLRIVLDRRLELPIGSKLVQTAGHV 245 Query: 244 PVIIVTENDD--------PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 P + A + +++ DL LL L +G++SLLVEGG Sbjct: 246 PTVCACGEPSTFTCTESFEASRTALQAAGVDVW--PVADLDDLLRQLAVQGMSSLLVEGG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 AA A +F+N+ LVD I LY+ IG G+ SPL + +NF +R FG+D EY Sbjct: 304 AAAAKAFLNAGLVDRIHLYQGPDEIGGSGLASPLTPANIPENFRHLRSVNFGADRFDEYE 363 Query: 356 GK 357 Sbjct: 364 QD 365 >gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TMA 21] gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TMA 21] Length = 367 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E + + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEEDARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V LLVE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQLLVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC 19707] gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27] gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus oceani ATCC 19707] gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27] Length = 365 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 193/364 (53%), Gaps = 21/364 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG A+G+ Sbjct: 1 MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIRAQGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ + + Sbjct: 61 TCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVEHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E + ++ R V+ R + K+A+S D +A S IT ++ V RA+ Sbjct: 121 LQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIKTALL 242 S AIL GIGTV+ DDP L R LQ+ P+R++LD + ++++ +L Sbjct: 181 SSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLL--SLR 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 PV+IV + A + R + + +I DL L+ +L R + L VE GA + Sbjct: 239 GPVMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGARL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LEYIGK 357 A S + + L+D ++LY + ++GE + G L+ + RD D+ + +G+ Sbjct: 299 AGSLLQAGLMDELVLYIAPKLMGEAAL------GLLQLPGIQTMRDCIEVDIKEMRAVGQ 352 Query: 358 NLCL 361 + L Sbjct: 353 DWRL 356 >gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM 4166] Length = 366 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 179/359 (49%), Gaps = 17/359 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AG Sbjct: 2 TTDHAWMARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI Sbjct: 62 ERARGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + + R ++ K+A+S D MA S ITG ++ +V Sbjct: 122 EVASGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLD 233 LRA+S +L G TVL D LT R L + P+R+++D ++ LD Sbjct: 182 QRLRARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLD 241 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + P ++VT ++ + DL LL L RG +LVE Sbjct: 242 APFFQ---AGPALVVTVVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 G + +F + L+D L+ + +G P PLE + V G D Sbjct: 299 AGPRLVGAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357 >gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13] gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13] Length = 369 Score = 338 bits (867), Expect = 1e-90, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 182/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG Sbjct: 4 DEFYMARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q GI + Sbjct: 64 ARGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M S+ + +L R ++ LK+ S D MA S IT ++ V Sbjct: 124 RHGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRAQS AIL TVLADDP LT R + L P+RIILD +++ Sbjct: 184 LRAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++++ + D ++ + DL ++ L R V S+ VE Sbjct: 244 RVVQQP--GTTWLARLQPDDQNWPQEVEQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 GAA++ + + + LVD +ILY + ++G+ G LE F+ G D+ Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPDL 361 Query: 351 CLEYIGK 357 L K Sbjct: 362 RLRLKPK 368 >gi|257467357|ref|ZP_05631668.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium gonidiaformans ATCC 25563] gi|315918487|ref|ZP_07914727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium gonidiaformans ATCC 25563] gi|313692362|gb|EFS29197.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium gonidiaformans ATCC 25563] Length = 359 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 110/359 (30%), Positives = 182/359 (50%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAGEE Sbjct: 3 DLEYMHLALELAKHGEGRVNPNPLVGAVVVKNGKIIGKGYHHEYGGPHAEVFALQEAGEE 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSHYG++PPCA+ II+ GI+R V+ + DP+ V G+G+ + GI + Sbjct: 63 AKGATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCVISMGDPNPLVGGKGISMMRDAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+E + +L K + LK ++ D + S IT I++ +V Sbjct: 123 EIGLCETEARALNRVFLKYISTKLPFLFLKCGITLDGKLATRDFQSKWITNEIAREKVQQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + I+VG+ TV+ D+P L R+ P RII+DP+ ++ L SK++ V Sbjct: 183 LRNKYTGIMVGVHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHRHDKKTV 240 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 II + + I+ + R ++L + G+ S+L+EGG + S Sbjct: 241 IITSFLEKETQKKKELDDLETRFIFLEDRIFSWPQMLIEIGKLGIDSVLLEGGGQLISSA 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 ++D ++ + ++G+ + + E V +G++ +E+ Sbjct: 301 FREDVIDGGEIFIAPKILGDKEAVAFVSGFSKESMDEAITLPNVELHQYGNNCSMEFYR 359 >gi|209884995|ref|YP_002288852.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans OM5] gi|209873191|gb|ACI92987.1| riboflavin biosynthesis protein RibD [Oligotropha carboxidovorans OM5] Length = 380 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 152/358 (42%), Positives = 200/358 (55%), Gaps = 12/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE QAL+ AGE Sbjct: 15 DHRFMQLALALGRRGQGATWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPQALQRAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSHYG+SPPC II GI RVV ++DP+ +V+G+G L GI + Sbjct: 75 ARGATLYVTLEPCSHYGKSPPCVDAIIVSGIARVVSAIEDPNPQVAGQGHVRLRDAGITV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + R E R H+TLK+AVS D I AG V ITG + +VHL Sbjct: 135 DVGLCRDEAAQAHSGHFLRVREGRPHVTLKLAVSADGKIAAAGGKPVRITGEAANARVHL 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+SDAIL+GIGT LADDP LTCRL G++ SP+R++LD +L S+++ +A P+ Sbjct: 195 LRAESDAILIGIGTALADDPLLTCRLPGMEHRSPVRVVLDRALRLPGASRLVHSARQTPL 254 Query: 246 IIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I+ A A ++ DL +L L + +T LLVEGGA V Sbjct: 255 WIIAAETAEAAAAARLGVAGAHLFRLPVEDRAAGLDLNAVLRTLSEQDITRLLVEGGAKV 314 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352 A SF+ +RLVD L + IG+ G+P+ L+ + G D Sbjct: 315 ASSFLAARLVDEFWLLQGAKSIGDDGLPALEGQDLDAVTASSGWRIDATQMLGDDRLT 372 >gi|57234067|ref|YP_181903.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes 195] gi|57224515|gb|AAW39572.1| riboflavin biosynthesis protein RibD [Dehalococcoides ethenogenes 195] Length = 365 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 181/358 (50%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NP+V +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPAVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V Sbjct: 62 GAALYVTLEPCCHQGRTPPCTVAIIESGIKEVYIATLDDNPLVSGKGKKELEDAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKYITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHCQPTRVIIDDNGRAPLSSNVFHVPGN- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + P A+ + ++ DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTPEEKQAYDEVGAKVVEMPDERGLVDLKSLLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 S + +LVD ++++ + I+IG P+ E + FG DV + Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLI 358 >gi|298488889|ref|ZP_07006913.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 366 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 127/356 (35%), Positives = 181/356 (50%), Gaps = 20/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L GI + + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + +L R + +I +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPFFQA 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296 ++VT + + + D DL+KL+ L RGV +LVE G Sbjct: 241 GSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLVEAGP 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 +A +F LVD ++ + +G P PL + V+ G+D Sbjct: 298 RLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 353 >gi|260466843|ref|ZP_05813027.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum WSM2075] gi|259029345|gb|EEW30637.1| riboflavin biosynthesis protein RibD [Mesorhizobium opportunistum WSM2075] Length = 376 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 165/365 (45%), Positives = 227/365 (62%), Gaps = 10/365 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 ++ D RFM+AALR SR + G TSTNPSV LIV+D +++G GVTA GG PHAE + Sbjct: 11 QAALDHRFMAAALRLSRRNAGRTSTNPSVGTLIVRDDGAGPMIVGTGVTAVGGRPHAETE 70 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG+G Sbjct: 71 ALAEAGELARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGASSDPDPRVSGKGYAI 130 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI +V++++ ++ + YL R ++KR + LK+A+S D IG G G V ITG Sbjct: 131 LRAAGIEVVEKVLAAQAAEQMAGYLIRSLKKRPEVILKLALSSDGKIGREGAGQVAITGD 190 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +++ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L SK++ Sbjct: 191 MARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLV 250 Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 P+ + DP A + + I + + L +LL L G+ S+LV Sbjct: 251 SGVDRVPLYVAACLQADPQRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLV 310 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGGA VA +F+ LVD I+L++ IGEGGI SP++ ++ F +R FG D Sbjct: 311 EGGARVASAFLADGLVDRIVLFQGPEAIGEGGIASPIDGDHIPAGFRKLREMRFGEDGYA 370 Query: 353 EYIGK 357 E+I Sbjct: 371 EWIRD 375 >gi|58578775|ref|YP_196987.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] gi|58417401|emb|CAI26605.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 135/355 (38%), Positives = 203/355 (57%), Gaps = 9/355 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 6 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L Sbjct: 66 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + +M++E + + +++ R IT+KIA + D I + S IT +++ Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 + P I+T + + N I + L + + +LV + G+T L VEGG+ + Sbjct: 246 VIPTYILT---NSIEETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 303 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 357 >gi|57238845|ref|YP_179981.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Welgevonden] gi|57160924|emb|CAH57829.1| riboflavin biosynthesis protein RibD [Ehrlichia ruminantium str. Welgevonden] Length = 365 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 135/355 (38%), Positives = 203/355 (57%), Gaps = 9/355 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 1 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ +DPD+RVSG G++ L Sbjct: 61 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIATNDPDMRVSGNGIKLLRDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + +M++E + + +++ R IT+KIA + D I + S IT +++ Sbjct: 121 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA Sbjct: 181 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 + P I+T + + N I + L + + +LV + G+T L VEGG+ + Sbjct: 241 VIPTYILT---NSIEETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 298 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQSSYNFKRVDTLYFDGDVV 352 >gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str. Bath] gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str. Bath] Length = 378 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 180/366 (49%), Gaps = 13/366 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D FM+ ALR + + T NP V ++V+ V+G G G PHAE+ AL Sbjct: 13 SWSPEDHCFMAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALR 72 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +A A GAT YVTLEPCSH+GR+PPCA +IE G+ RVV + DP+ RV+G+GL+ L + Sbjct: 73 DARGRAAGATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRR 132 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++ E + ++ R + K+A+S D +A S ITG ++ Sbjct: 133 AGIEVSCGLLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAAR 192 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKT 239 VH LRA+S I+ GIGT+ ADDP LT R N E P R+ILD + ++++ + Sbjct: 193 RDVHRLRARSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQ 252 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEG 294 +++T DP A ++ + D+ ++ +L +L E Sbjct: 253 P--GRTLVLTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEA 310 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDV 350 GA++ + +++ +VD ++Y + V+G+ L V GSD+ Sbjct: 311 GASLNGALLSAGVVDEWVVYLAPCVLGDEARGLFRLPGLAGMADRPELAIVDARRVGSDM 370 Query: 351 CLEYIG 356 L Sbjct: 371 RLILRS 376 >gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2] gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2] Length = 367 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-G 286 +L + + +T +PV+ V + + A K DL++LL L + Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQKHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. syringae 642] Length = 378 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ A+ +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL++L+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + V Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|58616834|ref|YP_196033.1| riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Gardel] gi|58416446|emb|CAI27559.1| Riboflavin biosynthesis protein ribD [Ehrlichia ruminantium str. Gardel] Length = 370 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 135/355 (38%), Positives = 204/355 (57%), Gaps = 9/355 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +FMS ALR +R +G NP+V C+IV DG+V+GRG T GG PHAE+ AL+ Sbjct: 6 MTYCDKKFMSLALRLARRGLGNVFPNPAVGCIIVNDGVVVGRGWTQVGGRPHAEIVALDN 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A+GATAYVTLEPCSHYG++ PC +I GI+RVV+ ++DPD+RVSG G++ L Sbjct: 66 VKHLAKGATAYVTLEPCSHYGKTGPCVLNLINAGIKRVVIAINDPDMRVSGNGIKLLRDA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + + +M++E + + +++ R IT+KIA + D I + S IT +++ Sbjct: 126 NVEVRCGVMDNEARALNIGFFYSKIKNRPFITVKIASTLDGKIALNSGESKWITSELTRT 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R+ DA++VG T++ D+P L R+ GL+ +SP+RI++D + K+S IIKTA Sbjct: 186 WVHKQRSMYDAVMVGSNTIMQDNPMLNTRIPGLECYSPVRIVIDRYGKVSNYHNIIKTAD 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 + P I+T + + N I + L + + +LV + G+T L VEGG+ + Sbjct: 246 VIPTYILT---NSIKETKLGAANYLCIDSEDNFLSESMKVLVKKVGITRLFVEGGSILIT 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 + + LVD II RS + G IP+ + E NF V YF DV Sbjct: 303 ELLKNNLVDQIIWCRSNKIFGNDSIPAIGGLNIRELQCSYNFKRVDTLYFDGDVV 357 >gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 392 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 185/372 (49%), Gaps = 21/372 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +MS ALR + T+ NP+V C++V+ G V+G G G PHAE+ AL++AG Sbjct: 13 QDEFYMSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKAGR 72 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+G+ AY+TLEPC HYG++PPC + +I+ G+RRVVV ++DP+ ++GRGL L Q GI Sbjct: 73 LAKGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIE 132 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ +E + +L R +I LK+A S D MA S IT S+ V Sbjct: 133 VTSGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQ 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TV AD+P LT R L + P+RIILD H K++ Sbjct: 193 FFRAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQ 252 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289 ++++ +I T+ D + + I + DL L+T L R + Sbjct: 253 HQVVQQPGTC-WLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNL 311 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDY 345 + VE GA +A + + LVD +ILY + ++G L E F+ Sbjct: 312 IWVEAGAELAGGLLEAGLVDELILYMAPKLLGNTARGLCQLPGLNELAKAPEFVLQEVKQ 371 Query: 346 FGSDVCLEYIGK 357 G D+ L Sbjct: 372 MGPDLRLRLKPD 383 >gi|117923484|ref|YP_864101.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Magnetococcus sp. MC-1] gi|117607240|gb|ABK42695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Magnetococcus sp. MC-1] Length = 376 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 142/365 (38%), Positives = 195/365 (53%), Gaps = 15/365 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D +M ALR + +G T NP+V C+IVK+ +IGRG G PHAEV+AL Sbjct: 4 PDAGKDRAYMDHALRLAARGLGRTRPNPTVGCVIVKEDRIIGRGWHRKAGGPHAEVEALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPCSH+GR+PPC + +I+ GIRRVV ++DP+ VSG+G Q L Q Sbjct: 64 MAGEAARGATAYVTLEPCSHHGRTPPCCEGLIKAGIRRVVAAMEDPNPLVSGQGFQRLKQ 123 Query: 122 KGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G++V + E L ++TR + R +TLK A S D S ITG ++ Sbjct: 124 AGVVVQVGVREEAAQMLIRPFITRILHNRPMVTLKSAASLDGKTATRERHSQWITGEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + H LR D IL GI TVLADDP LTCRL G P+R+++D KLS ++ +I Sbjct: 184 KRGHRLRDTHDVILTGIQTVLADDPRLTCRLKG--GRDPIRVVVDSSLKLSENAGVINPD 241 Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293 APV + T P A + +I C DL L+ L R +TS+L E Sbjct: 242 STAPVWVATTLRAPEEKRALFALLPGVEVIMCAEDDTGRVDLYDLMEKLAKREITSVLAE 301 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348 G ++ + ++ RLVD I L+ + ++IG L+ K V Sbjct: 302 AGGVLSGALLDKRLVDRIALFMAPMLIGGREASGILDSLGAAKLTEAPRLDHVTLTSLDG 361 Query: 349 DVCLE 353 D+ +E Sbjct: 362 DLLVE 366 >gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3] gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3] Length = 367 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 187/375 (49%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPLSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAKNGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio acidaminovorans DSM 6589] Length = 377 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 193/354 (54%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL + S NP V C+IVKDG V+G G G PHAEV+AL AG+ A+ Sbjct: 20 YFMRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMAGDRAQ 79 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GATAYVTLEPCSH+G++PPCA ++E GIRRVV + DP+ +V+GRGL+ L+ G+ V Sbjct: 80 GATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEVVG 139 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +ME + ++ R R +TLK A+S D + S ITG +++ + HLLR Sbjct: 140 PVMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHLLR 199 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DAILVGI TV+ DDP L R + SP ++ILD ++ LD+K +K I+ Sbjct: 200 AEHDAILVGINTVINDDPALNVR--SVDGDSPKKVILDGGLRVPLDAKALKDGER---IV 254 Query: 248 VTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T D P A R + + + DL +L+ L G GV SLLVEGG V +F Sbjct: 255 FTSTDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAF 314 Query: 303 INSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ L D + L+ S ++G G +E + G+D+ LE Sbjct: 315 VDRCLGDMVSLFISPSILGRGLQLCESFEIEGMENRVHIRDHSIRRAGNDIWLE 368 >gi|150396042|ref|YP_001326509.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419] gi|150027557|gb|ABR59674.1| riboflavin biosynthesis protein RibD [Sinorhizobium medicae WSM419] Length = 398 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 173/390 (44%), Positives = 238/390 (61%), Gaps = 39/390 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+AALR SR ++G T TNPSV C+IV +G+++GR VTA GG PHAE QAL EAGE+ Sbjct: 8 DERFMAAALRLSRRNLGRTGTNPSVGCVIVNEGMIVGRAVTASGGRPHAETQALAEAGEK 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G++PPC +I G+ RVVV + DPD RV+GRG+ L + GI + Sbjct: 68 ARGATAYVTLEPCSHHGKTPPCTDALIASGVARVVVAILDPDERVAGRGIVLLREAGIAV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ EG+ L AYL RQ +KR H+TLK+AVS D MIG G G V ITG +S+ QV + Sbjct: 128 DIGVLREEGERALQAYLMRQCKKRPHVTLKLAVSNDGMIGRRGEGQVRITGAVSRAQVQI 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DAILVGIGT ADDPELT R+ GL++ SP+RI+LD +L ++SK++++A + Sbjct: 188 LRAETDAILVGIGTASADDPELTVRMQGLEDRSPVRIVLDRRLELPIESKLVRSAGEVSL 247 Query: 246 IIVTEND-DPVLALAFRKKN-------------------------------------INI 267 I+V + P + + + Sbjct: 248 IVVAGDAGSPSPRMRVEGERRADEGQVSGVSLPLTPTLSPVAGRGGDYEARRDVLVSAGV 307 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 + ++ LL L RG++SLLVEGG++ A +F++ LVD I+L+ IG+GGIPS Sbjct: 308 EILNADNIPDLLAALASRGISSLLVEGGSSAARAFLDVELVDRILLFTGPSPIGKGGIPS 367 Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 P + + F R +G D+ EY Sbjct: 368 PFQRRSVPAGFTLQRTARYGDDIFEEYERD 397 >gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385] gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385] Length = 367 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9] gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9] Length = 383 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 184/379 (48%), Gaps = 28/379 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D R+M+ AL+ +R + T+ NP V C++V DG V G G G PHAE AL Sbjct: 2 FSADDHRYMARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHALAM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA +++ G+ RVV + DP+ V+G+G+ L+ Sbjct: 62 AGERARGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAA 121 Query: 123 GIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++E+E +++R R +T+K+ +S D +A S ITG ++ Sbjct: 122 GIECASGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-------------------LNGLQEHSPMRI 222 V RA D IL G GTV AD+P+LT R P+R+ Sbjct: 182 DVMRQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRV 241 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTI 281 I+D L D+ I APV + T P +++ D R DL LL Sbjct: 242 IVDGAGTLDPDAAIF---CGAPVRMYTAATTPATGRLHGHTVVSLPGADGRVDLAALLAD 298 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKN 337 L GV + E G +A + +++ LVD ++ Y + +V+G PL + Sbjct: 299 LGRLGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGHSARGMFDLPPLAALADKSC 358 Query: 338 FMCVRRDYFGSDVCLEYIG 356 + G+D+ L Sbjct: 359 WRWHDVRSVGNDLRLTLRP 377 >gi|159903849|ref|YP_001551193.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9211] gi|159889025|gb|ABX09239.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9211] Length = 365 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 194/355 (54%), Gaps = 9/355 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M A + ++ G T+ NP V +++ D ++IG G + G PHAEV+AL +AG+ A Sbjct: 13 YWMQRAFQLAQLADGETNPNPLVGAVVLDPDKLLIGEGFHSKAGSPHAEVEALRQAGDAA 72 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +G T VTLEPC HYG +PPC + IIE G+ RVVV + DPD RVSG G++ L + GI ++ Sbjct: 73 KGGTLLVTLEPCCHYGLTPPCTKTIIESGVSRVVVGLQDPDPRVSGNGIRLLKEAGIEVI 132 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E A++ R R LK+A+S D G++ S IT ++ +VH L Sbjct: 133 TGILKEEISFQNRAFIFRIKTGRPWGILKLAMSFDGRTGLSNGKSKWITSQEAREKVHAL 192 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DA+++G GT+ ADDP LT R GL+ P+R++ L + ++I +T A + Sbjct: 193 RAKCDAVIIGGGTLRADDPLLTSR--GLRNPEPLRVVFSQSLSLPIGAQIWRTES-AKTL 249 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + N++ + + +N+ + + ++LL L +G +L E G ++A S I Sbjct: 250 VAFSNENALPLIQELPENVEKLKLHESNPRELLEELAKKGCNRILWECGPSLATSAIKQN 309 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 V I+++ + ++G G+P+ G F + + +V L GK+ L Sbjct: 310 CVQEIVIFMAPKLLG--GLPAMTLLGNF--GFDSLDQALILKEVSLAKSGKDFVL 360 >gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum 3TCK] gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum 3TCK] Length = 371 Score = 337 bits (865), Expect = 1e-90, Method: Composition-based stats. Identities = 110/368 (29%), Positives = 176/368 (47%), Gaps = 20/368 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL Sbjct: 2 FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ +GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L Sbjct: 62 AGEQTKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ ++ + ++ R ++ LK+A S D ++ S ITG ++ Sbjct: 122 GIEVQTGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL TV+ADDP L R + L E P R+I+D ++ Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRV 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288 + D K+ +L ++ + I D +L L+ L + + Sbjct: 242 TPDFKLF--SLAGKTLLARAEMGQETWSDSVSQVIIPKEDDSEQLNLTSLMLELAKQDIN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344 + VE GA +A + S LVD +I+Y++ ++G +G + Sbjct: 300 HIWVEAGAELAGGLLASGLVDELIIYQAPKLMGCDSRSLINLKGLTSMSQVLSLEITDVR 359 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 360 MIGPDLRI 367 >gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Candidatus Blochmannia floridanus] gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis [Candidatus Blochmannia floridanus] Length = 378 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 120/369 (32%), Positives = 178/369 (48%), Gaps = 23/369 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++S A R +R T NP+V C+IVK+ VIG G G HAE+ AL AG Sbjct: 8 DNDLIYLSRAFRLARKGRFTTMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIAG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YVTLEPCSHYGR+PPC +I GI+ VV+ + DPD + GRG++ L + GI Sbjct: 68 DSARGATVYVTLEPCSHYGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M SE + ++ R I +K+A S D M S IT S+ V Sbjct: 128 LVRHSLMLSEAEHINKGFIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RA+SD IL T+L D+P L R + + P+R+I+D ++ Sbjct: 188 QCFRAESDVILSTATTILIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLP 247 Query: 233 DSKIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGV 287 + I+ + VI+V D P IN++ +L+ L+ L R + Sbjct: 248 THRFIQNS--GKVILVRLKKDNLNWPESVEQLLAPEINLVGSYQINLEALMKYLGYVRKI 305 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRR 343 ++ VE G ++ S ++ LVD +ILY+S +G P ++ K F + Sbjct: 306 NNVWVEAGPTLSGSLLDIGLVDELILYQSIKFLGSNAKPLCFLPNIDNLKDVKTFKLLNI 365 Query: 344 DYFGSDVCL 352 G D+ L Sbjct: 366 KNIGPDIRL 374 >gi|240127481|ref|ZP_04740142.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae SK-93-1035] Length = 361 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 124/358 (34%), Positives = 182/358 (50%), Gaps = 11/358 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQAGEMAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L +S ++ I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIAT 239 Query: 249 TENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 E D+ L +I I+ DL L+ +L G ++VE G + +F+ Sbjct: 240 LERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAFL 299 Query: 304 NSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L D I+LYRS ++G G +P + V + G D+ + Sbjct: 300 AENLADEIVLYRSPKILGGGKDLFSLPENRAALSAPPLWTPVSSEILGHDIKTVFRKN 357 >gi|325109372|ref|YP_004270440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Planctomyces brasiliensis DSM 5305] gi|324969640|gb|ADY60418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Planctomyces brasiliensis DSM 5305] Length = 377 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 110/359 (30%), Positives = 179/359 (49%), Gaps = 16/359 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL +R G NP V ++V + +I G G PHAEVQAL AG+ ARG Sbjct: 12 MQRALELARQGEGFVEPNPCVGAVVVDENLQLIAEGYHEQYGGPHAEVQALRNAGDRARG 71 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 A +VTLEPC+H+G++PPC++ +I+ GI RV + DP +G + L + G+ + Sbjct: 72 AWIFVTLEPCNHHGKTPPCSEAVIQAGIERVFIGCLDPAAHEKRQGAERLREAGLQVEVG 131 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + E + L + + ++ K A++ D I S I+G S+ VH LR Sbjct: 132 LCQQEAERLLRPFTKLMTTGQPYVHAKWAMTLDGKIATRTGSSQWISGPESRAVVHKLRG 191 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-ALLAPVII 247 + DAIL G GTVLAD+P+LT R G +P+R+++D +L L S++++T + PV++ Sbjct: 192 RCDAILTGRGTVLADNPQLTARPPG--PRTPLRVVVDSQAQLPLTSQLVQTCSSDQPVLL 249 Query: 248 -VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 T D ++ + + L LLT L R VT+L +E G + S Sbjct: 250 ACTARADAEKVRQLQQLGVEVQQFSASPEGRPQLAALLTELGKRKVTNLFLECGGELLGS 309 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYI 355 F++ RL+D + ++ ++G S + G + + + + DV + I Sbjct: 310 FLDQRLIDEVHVFLGPKLVGGKEARSAVLGGGVSEMAEALLLEEIEAETLAQDVYIRGI 368 >gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus MB-451] gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio mimicus MB-451] Length = 367 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 29/376 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSGQAQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL +LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENADLCISAENGK---------LDLHELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 350 CRMVGADLRIIATPKS 365 >gi|118587985|ref|ZP_01545395.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614] gi|118439607|gb|EAV46238.1| riboflavin biosynthesis protein [Stappia aggregata IAM 12614] Length = 374 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 167/369 (45%), Positives = 231/369 (62%), Gaps = 15/369 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DG--IVIGRGVTAYGGCPHAEVQ 58 +S+ DARFM+AA R +R +G NPSVA LIV+ DG +V GRGVT+ G HAEV Sbjct: 4 LSNLDARFMAAAERLTRRGLGRVWPNPSVAALIVRFEDGAAVVAGRGVTSRPGMAHAEVN 63 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE+A+GAT YVTLEPCSHYGR+PPCA+ +IE G++RVVV + DP+ RV+GRG+ Sbjct: 64 ALNQAGEKAQGATCYVTLEPCSHYGRTPPCAKALIEAGVKRVVVGMLDPNPRVAGRGVGM 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + GI +V + E + + RQ+++R + LK+AVS+D IG AG G V I+G Sbjct: 124 LREAGIEVVVGVREKAMQALYRGFTYRQLKQRPVVFLKLAVSRDGFIGRAGEGQVKISGP 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S +VH RA+ DAILVG GT LADDP+LTCRL GL + SP+R+I+D +LSL SK++ Sbjct: 184 LSMRKVHGYRAECDAILVGSGTALADDPQLTCRLPGLADRSPVRVIIDRCARLSLTSKLV 243 Query: 238 KTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 +T + PV +V N D +N+I + +L+ L RG+T ++V Sbjct: 244 QTCVDVPVWLVCSNTADADKIADLAAAGVNVIRVPAEETGIKPSVILSALATRGITRVMV 303 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348 EGG+ +A SF+ + LVD + + IVIGEGGIP+ L + F V FG Sbjct: 304 EGGSRLASSFLAADLVDDLCVVTGDIVIGEGGIPALHGLDLADVLKNPKFERVDAGRFGP 363 Query: 349 DVCLEYIGK 357 D Y+ + Sbjct: 364 D-SFVYLRR 371 >gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587] gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587] Length = 367 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 186/370 (50%), Gaps = 29/370 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQASELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPQSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A +K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENEK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGGQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCL 352 G+D+ + Sbjct: 350 CRMVGADLRI 359 >gi|282850242|ref|ZP_06259621.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC 17745] gi|282579735|gb|EFB85139.1| riboflavin biosynthesis protein RibD [Veillonella parvula ATCC 17745] Length = 403 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 2 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI Sbjct: 62 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +TLK A+S D I + S IT S+ H Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228 +LRA DA+LVGIGT+LAD+P+L CRL + H P IILD Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272 + S++ + I V++ A + + + Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 301 Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330 + +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG P+ Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361 Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357 G+ + + +++ +E + Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392 >gi|294793755|ref|ZP_06758892.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44] gi|294455325|gb|EFG23697.1| riboflavin biosynthesis protein RibD [Veillonella sp. 3_1_44] Length = 403 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 185/391 (47%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 2 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI Sbjct: 62 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIK 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +T+K A+S D I + S IT S+ H Sbjct: 122 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228 +LRA DA+LVGIGT+LAD+P+L CRL + H P IILD Sbjct: 182 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 241 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272 + S++ + I V++ + + + Sbjct: 242 RTPTTSRVFEINNRKIHIFVSKGCPKDRIQVLEQVGAQVTVVESISTRKSKSTDIVIDIK 301 Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330 + +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG P+ Sbjct: 302 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 361 Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357 G+ + + +++ +E + Sbjct: 362 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 392 >gi|294791895|ref|ZP_06757043.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27] gi|294457125|gb|EFG25487.1| riboflavin biosynthesis protein RibD [Veillonella sp. 6_1_27] Length = 404 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +TLK A+S D I + S IT S+ H Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTLKSAMSLDGKIATSTGQSQWITNESSRRDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228 +LRA DA+LVGIGT+LAD+P+L CRL + H P IILD Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272 + S++ + I V++ A + + + Sbjct: 243 RTPTTSRVFEINNCKIHIFVSKGCPKDRIQALEQVGAQVTVVESISTRKSKSTDIVIDIK 302 Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLE 330 + +LT L G TS+LVEGG+A+ SF+ ++ D ++ Y +IG P+ Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETKNFDKVVTYIGNTIIGGNDATPAVGG 362 Query: 331 EGY----LEKNFMCVRRDYFGSDVCLEYIGK 357 G+ + + +++ +E + Sbjct: 363 RGFESLEVSPQLTFTKTKVLDNNIRIEAYRQ 393 >gi|300087628|ref|YP_003758150.1| riboflavin biosynthesis protein RibD [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527361|gb|ADJ25829.1| riboflavin biosynthesis protein RibD [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 362 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 173/363 (47%), Gaps = 16/363 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL+ + +G S NP+V ++VKD ++G+G T G HAEV AL +AG ++GA Sbjct: 1 MQQALKLAGLALGEVSPNPAVGAVVVKDDEIVGQGYTQPPGQEHAEVMALNQAGARSQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPC+H GR+PPC II GI+ V D + V G+G L+ GI V Sbjct: 61 VMYVTLEPCAHQGRTPPCTDAIIAAGIKEVHFATLDDNPVVFGKGKAALTAAGIEVHVGE 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + AY +T K A+S D I S I+ S+ H LR + Sbjct: 121 HRDAARELNEAYFKYINTGLPFVTAKFAMSLDGKIATRTGDSKWISNDESRAFAHSLRHE 180 Query: 190 SDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +DAI+ G+GTV+AD+P+LT R G P+RI++D H + + + + Sbjct: 181 ADAIMAGVGTVIADNPKLTARCCAGSGGTSHKQPLRIVVDSHGRTPDTAVLFHEPGR-TI 239 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + + + + DL L++ L + +TS++VEGG+++ S Sbjct: 240 LAFGGQVSEERRIPYTQAGAELESFPDGNGRVDLPALMSFLGKQQITSVIVEGGSSLLGS 299 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE-YI 355 ++ LVD +I++ + ++IG GG + + E R G D + Y+ Sbjct: 300 MFDAGLVDKVIVFIAPMIIGGGGALTAVGGNGAETLDQACRLEKTRTWRLGEDTVITGYV 359 Query: 356 GKN 358 K+ Sbjct: 360 NKD 362 >gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC586] gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC586] Length = 367 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 191/377 (50%), Gaps = 31/377 (8%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +++ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L + P+R+ILD Sbjct: 181 ARKDVQCFRAQASAILSTSQTVLADNASLAVRWHDLPKSVQAQYAETDLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILV-GR 285 +L + + +T PVL +A ++ I + + DL++LL L Sbjct: 241 HQLHPELALYQTP------------SPVLRVASENADLCISTENGKLDLRELLAQLAQQH 288 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCV 341 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 289 NVNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIE 348 Query: 342 RRDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 349 DCRMVGADLRIIATPKS 365 >gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aceris str. M302273PT] Length = 378 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL++L+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + V Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|262373927|ref|ZP_06067204.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205] gi|262310938|gb|EEY92025.1| riboflavin biosynthesis protein RibD [Acinetobacter junii SH205] Length = 366 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 125/369 (33%), Positives = 190/369 (51%), Gaps = 22/369 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S + +M A+ +R T NP+V C+IVKDG +IG G G PHAEV AL +AG Sbjct: 10 SENQYWMQQAIDLARRGQYSTKPNPNVGCVIVKDGKIIGEGFHPKAGQPHAEVFALRQAG 69 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A+ ATAYVTLEPC+H+GR+PPCA+ +++ +++VVV DP+ V+G+G++ L GI Sbjct: 70 ENAKDATAYVTLEPCAHFGRTPPCAEALVKAQVKKVVVACSDPNPLVAGKGVKILQDAGI 129 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + + E K +L ++ LKIA S D MA S ITG ++ V Sbjct: 130 EVETGICDEEAKTLNFGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTAARQDV 189 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKIIKT 239 RA S A++ GI TVLADD EL R + P RIILD +L L +KI++ Sbjct: 190 QHWRAISAAVITGIQTVLADDCELNVRSLDGVDLSSVVQPKRIILDRQGQLPLSAKILQN 249 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 V+++T ++ +I + L +LL L + + +LVE GA + Sbjct: 250 PE--TVMVMT-------PFRQELADLGVIQLAPQPLNQLLQTLTQQYQIYDVLVEAGATL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + +F+ LVD +I Y + ++G+ P + + F V G D+ L + Sbjct: 301 STAFLEQGLVDEMISYVAPTLLGQSARPMFNAKFSKMAEQLRFELVDVTQLGQDIRLRLL 360 Query: 356 GKNLCLQEL 364 +QE+ Sbjct: 361 P----IQEM 365 >gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8] gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8] Length = 372 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 184/363 (50%), Gaps = 12/363 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S+ D +M+ ALR + + T NP V C+IV+D ++G+G G PHAEV AL Sbjct: 3 TLSTSDHTYMNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG A GA YVTLEPCSH+GR+PPC Q +I +RVV+ + DP+ V+GRG+ L Sbjct: 63 QAGALAEGADVYVTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTALRA 122 Query: 122 KGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 +G+ V + + ++ R ++ KIA S D ++ S ITG ++ Sbjct: 123 QGVEVVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEAAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RAQS AIL GIGTVLAD+P +T R P+R+I+D +L L+S +++ Sbjct: 183 QDVQHWRAQSCAILTGIGTVLADNPSMTVRFPTAT-RQPLRVIVDSKLQLPLNSNMLEPT 241 Query: 241 LLA--PVIIV----TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +LA PV++ TE VLA + DL +LL +L R V +LVE Sbjct: 242 MLAQSPVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLVEA 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDV 350 G + +++ L+D I Y + ++G + + + G+D+ Sbjct: 302 GQGLNGGLLHAGLIDEFIFYYAPKLMGSAAHGMFAMPAFTTMQQVPDLQVLDVRQVGADI 361 Query: 351 CLE 353 + Sbjct: 362 RVR 364 >gi|296160058|ref|ZP_06842878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1] gi|295889804|gb|EFG69602.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1] Length = 391 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 185/368 (50%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++ Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP +T R P R+++D + +++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVRGDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP +I N D A A R + I+ DL +L +L R V L Sbjct: 240 --AGAPTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G P LE+ ++ +F V D Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLAAPETLED-RVKLSFHAV--D 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidithiobacillus caldus ATCC 51756] gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidithiobacillus caldus ATCC 51756] Length = 369 Score = 336 bits (863), Expect = 2e-90, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 184/366 (50%), Gaps = 14/366 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V ++V+DG ++GRG G HAEV AL +AGE ARGA Sbjct: 1 MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H+GR+PPC I+ G+ RVV+ + DP+ RV G G+ L Q+G+ + Sbjct: 61 TLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVELGC 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E ++ R R I LK A S D + +A S +TG ++ V RA Sbjct: 121 LAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRERAA 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AI+VG+GTVLAD+P L R++ P +IILD H + D+ + T I Sbjct: 181 ASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTPGEI-WIFHG 239 Query: 250 ENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ DP + ++ ++ DL L T L R +LVE G +A S + Sbjct: 240 QDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATSLL 299 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN- 358 VD +LY + ++GEG P+ P + ++ R + DV L+ + Sbjct: 300 RGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKLQLLSAEG 359 Query: 359 -LCLQE 363 CLQE Sbjct: 360 QSCLQE 365 >gi|194333661|ref|YP_002015521.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii DSM 271] gi|194311479|gb|ACF45874.1| riboflavin biosynthesis protein RibD [Prosthecochloris aestuarii DSM 271] Length = 373 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 180/364 (49%), Gaps = 18/364 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M L +R GL S NP V +IV + V+G G G PHAEV AL Sbjct: 8 TARDEYYMHRCLELARKGAGLVSPNPMVGSVIVVEDRVVGEGFHERYGGPHAEVNALASV 67 Query: 64 GEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + +T YV LEPCSHYG++PPC+ II IRRVVV DP +V+G+G++ L Q Sbjct: 68 SDASLLPSSTLYVNLEPCSHYGKTPPCSDLIISKKIRRVVVGCLDPHEKVAGKGIEKLRQ 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + +++ E + A++ + LK A + D I +A S +TG S+ Sbjct: 128 AGVEVTIGVLQRESEALNEAFIKSHTISMPFVVLKTAQTIDGRIAVASGESKWVTGAESR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH +R+ DA++ TV+AD+ LT R + +P+R++LD ++ L S I Sbjct: 188 REVHRMRSVHDAVMTTSSTVIADNSRLTVR--HCEGRNPVRVVLDRLLRVPLSSAIFDGE 245 Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRG-VTSLLVE 293 A I+ T N A A + + + D DL +L L + S++VE Sbjct: 246 --AKTILYTSNALGSSEKARALKAMGVIVCAAGDDGDFLDLSAVLKSLHDEHALLSIMVE 303 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR----DYFGSD 349 G +A + I RLVD I+ + + + G G+ + G + V R + G+D Sbjct: 304 AGGTLAGALIRHRLVDRIVWFVAPKLFGADGLGAVGSLGLQSVDDAPVMRFSSSRFLGND 363 Query: 350 VCLE 353 +C+E Sbjct: 364 LCIE 367 >gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC341] gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. RC341] Length = 367 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 127/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPPSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LLT L Sbjct: 241 HQLYPELALYQTP--SPVLRVASENADLRISAENGK---------LDLRELLTQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQQLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 350 CRMVGADLRIIATPKS 365 >gi|58699421|ref|ZP_00374173.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|225630417|ref|YP_002727208.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi] gi|58534061|gb|EAL58308.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|225592398|gb|ACN95417.1| riboflavin biosynthesis protein RibD [Wolbachia sp. wRi] Length = 360 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 6/354 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI + Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M+ E K + T + R I K+A + D I S IT ++N VH Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-LTILVGRGVTSLLVEGGAAVAHSFIN 304 ++T + +N LK + L ++ G+T LLVEGG + + Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 L+D +I+ RS ++G P + G N F + F D+ + Sbjct: 303 CNLIDRLIICRSGKILGNDATPFVGDLGIQFINNCYQFKKTKIIEFSEDIVEVW 356 >gi|322381771|ref|ZP_08055725.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like protein/5-amino-6-(5-phosphoribosylamino) uracil reductase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154159|gb|EFX46481.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase-like protein/5-amino-6-(5-phosphoribosylamino) uracil reductase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 362 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 193/349 (55%), Gaps = 10/349 (2%) Query: 18 SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 ++ G T NP V C++VKDG +IG G + G HAEV AL+ AG EA G+TAYVTLE Sbjct: 2 AKGAKGQTGVNPVVGCVLVKDGRIIGMGAHLHRGQGHAEVHALQMAGAEAEGSTAYVTLE 61 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKI 136 PCSH+G++PPC+ +I+ G++RVV+ DP+ +V+G G++ L GI VD ++ E Sbjct: 62 PCSHFGKTPPCSGRLIDHGVKRVVIAAVDPNPQVAGAGIERLRSAGIEVDVGLLAEEASA 121 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 A+ V +T+K A + D I S ITG +S+ VH +R Q ILV Sbjct: 122 MNEAFNKYIVTGMPFVTMKTASTLDGKIAAKTGDSKWITGDLSRAYVHTMRHQHQGILVS 181 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPV 255 + TV+ADDP+L+ RL + P+RI+ D +L L++++++ P I++T P Sbjct: 182 VDTVIADDPQLSTRLT-VPALQPVRIVADSRLRLPLEAQVLQDLDRQPTIVLTTELSSPE 240 Query: 256 LALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A + + +++ C DL+ + L R + S+L+EGG + + + LVD I+ Sbjct: 241 RRRALEELSASVLTCGSGPQVDLRLAMKQLGEREIGSILLEGGGRLNGAMLEQGLVDKIM 300 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 L+ + +IG P + E+ +R + F + E +G+++CL Sbjct: 301 LFVAPKIIGGKLSPQAISMEGWERMKDALRLERFQA----EPVGEDICL 345 >gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 378 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 39016] gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 39016] Length = 373 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|70732823|ref|YP_262590.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] gi|68347122|gb|AAY94728.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] Length = 377 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 129/358 (36%), Positives = 179/358 (50%), Gaps = 17/358 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M+ AL +R T NP V C+IV+DG V+G G G PHAEV AL AGE Sbjct: 10 LDAHYMARALELARKGRYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGLQ L+Q GI Sbjct: 70 LARGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGID 129 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++E E + +L R ++ +K+A+S D MA S ITG +++ V Sbjct: 130 THGGVLEGEARAINKGFLKRMEHGLPYVRVKLAMSLDGRTAMASGESQWITGPAARSAVQ 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDS 234 LRA+S +L G TVLADD LT R L P+R+++D ++ LD+ Sbjct: 190 RLRAESSVVLTGADTVLADDARLTVRAAELGLDAEQTALAMSRPPLRVLIDGRLRVPLDA 249 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K P ++ T + I DL++LL L RGV +LVE Sbjct: 250 PFFK---AGPALVATCAAVEEQYANGPECLIVPGPDGQVDLRRLLLELAARGVNEVLVEA 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 G +A +F LVD ++ + +G P PL + + G D Sbjct: 307 GPRLAGAFAQQGLVDEYQIFVAGKFLGSSARPLLDWPLAQMSQAPLLKIIEMRAVGDD 364 >gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAb1] Length = 373 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLVELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|302036973|ref|YP_003797295.1| bifunctional daminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Nitrospira defluvii] gi|300605037|emb|CBK41370.1| fused Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Nitrospira defluvii] Length = 373 Score = 336 bits (862), Expect = 3e-90, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 15/372 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D +M+ ALR + G TS NP V L+V G ++G+G G PHAEV AL + Sbjct: 1 MSSRDREYMTLALRLAAKGRGSTSPNPMVGALVVTRGRIVGQGSHRKAGGPHAEVIALSQ 60 Query: 63 AGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+G T YVTLEPCSH R+PPC ++ G+RRVVV + DP+ +V G G+ L++ Sbjct: 61 AGSRAKGGTLYVTLEPCSHLKKRTPPCVPLVMASGVRRVVVAMVDPNPQVKGNGVAQLTR 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + E+E AYL R LK ++ D I A S IT +S+ Sbjct: 121 AGIRVDVGCCEAEATQLNQAYLHWVKTGRPFTILKAGMTLDGQIATASGESQWITDEVSR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL----NGLQEHSPMRIILDPHFKLSLDSKI 236 Q H LRA DAILVGIGTVL D+P+LT R+ P+RI++D ++ L +K+ Sbjct: 181 QQAHRLRADVDAILVGIGTVLRDNPQLTARVTDDPPRTTGRQPLRIVVDSRLRIPLKAKV 240 Query: 237 IKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291 ++ A +I T + RK+ I+++ +L L L GVT++L Sbjct: 241 LEHQQTAHTLIATTAAASARKVERLRKRGIDVLVLPKAGGHVNLPVLWARLGQLGVTTVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGG+ + + + + L ++ Y + +++G ++ +R +V Sbjct: 301 VEGGSDLNAAVLQAGLPQRLMCYVAPLLLGGQDAKGLFGG----RSPRRLRSAVPLKNVR 356 Query: 352 LEYIGKNLCLQE 363 +E +G+++ +Q Sbjct: 357 IEPVGRDMLIQA 368 >gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102] gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102] Length = 367 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 11/367 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A A+GATAYVTLEPCSHYGR+PPCA+ +I G+ RVV + DP+ V+G+GL L Sbjct: 62 AQAAAKGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R R I LK A S D ++ S ITG ++ Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAARE 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R + P RI+LD ++ LD ++ Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L + ++I II +L L+ L G +L E G+ Sbjct: 241 SPTVIVTLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + +F+ LVD I+LY++ ++G G +P + ++ + G D+ Sbjct: 301 TLVSAFLKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWLSQSVEIIGQDIKW 360 Query: 353 EYIGKNL 359 K++ Sbjct: 361 VLRKKSV 367 >gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 369 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTV+ADDP +T R+ P+R++LD + I + Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + D +L + ++ DL +L +L RG+ + VEGGA ++ + Sbjct: 248 -APTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 307 LLQAGLVDELLVYVAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363 >gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis TXDOH] Length = 378 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|329943233|ref|ZP_08292007.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10] gi|332287812|ref|YP_004422713.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC] gi|313848384|emb|CBY17388.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci RD1] gi|325507267|gb|ADZ18905.1| riboflavin biosynthesis protein [Chlamydophila psittaci 6BC] gi|328814780|gb|EGF84770.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci Cal10] gi|328915072|gb|AEB55905.1| riboflavin biosynthesis protein RibD [Chlamydophila psittaci 6BC] Length = 368 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 106/362 (29%), Positives = 175/362 (48%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ + NP V C+IVK+G +IG G G PHAE +A+ Sbjct: 4 FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E G+ YVTLEPC HYG +PPC +I+ + V V + DPD RVSGRG+ L + Sbjct: 64 ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYVALLDPDSRVSGRGIASLRKA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + + + E + L +YL ++ + + +K A + D + S IT ++ Sbjct: 124 GICVYEGLGKEEAERSLKSYLYQRTHGKPWVVIKSAATLDGQVADKDGQSQWITCPEARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA S AI+VG TVL D+P LT R L P+R+++D + ++ I + Sbjct: 184 DVGKLRACSQAIIVGSKTVLKDNPLLTARKPSGELYPCQPLRVVVDSKGVIPPEANIFHS 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 + + + T ++++ + +D L +L+T L +LVEGG Sbjct: 244 TGKS-LYVTTAQSSKDHRKKIEDLGVDLLVTESKDSKVNLHELMTYLSTTHTLQVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352 A + SF+ RL ++++LY ++G+ P + G + + + + G+ + Sbjct: 303 AVLHTSFLKERLANTLVLYLGPKILGDQRKPIFGDLGLYLHSSQKIVPTFSEILGNSLKT 362 Query: 353 EY 354 + Sbjct: 363 SW 364 >gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2] gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa LESB58] gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa LESB58] Length = 373 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa UCBPP-PA14] gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa UCBPP-PA14] Length = 373 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLVELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLTRMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella excrementihominis YIT 11859] gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella excrementihominis YIT 11859] Length = 355 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 179/354 (50%), Gaps = 17/354 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL ++ NP+V C+IVKD +IG G T G HAEV AL +A GE Sbjct: 1 MRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESV 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT YVTLEPCSHYGR+PPCA + + RVV + DP+ V+G+GL+ L + G+ + Sbjct: 61 AGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVE 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E + +L RQ E + K+A+S D +A S IT ++ H Sbjct: 121 CGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R S A+L G+GTVLAD+P++T R G+ P+++++D + L+ D KI + + Sbjct: 181 RGISGAVLTGLGTVLADNPQMTARFEGVT-RQPLKVVVDSNLSLNPDLKIFQGG---KTL 236 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +V + D V A F + + +I + DL+ L+ L R + + VE GA + + Sbjct: 237 LVCAHYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGAL 296 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 L+D ++Y + + +G+G +PS ++ G DV L Sbjct: 297 AMEGLIDEYLIYVAPVFLGDGRRLLDLPS-FKDLCEGVALEFTDIQKVGPDVRL 349 >gi|291522092|emb|CBK80385.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Coprococcus catus GD/7] Length = 371 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 193/365 (52%), Gaps = 15/365 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 D R+M AL ++ G T+ NP V +IVKDG VI +G G HAEV+A ++AG Sbjct: 8 DLRYMQMALDMAKLGRGYTNPNPMVGAVIVKDGQVIAKGYHHCCGQGHAEVEAFKDAGNQ 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + GAT YVTLEPCSHYG++PPCA IIE I RVVV DP+ V+GRG++ + GI Sbjct: 68 DVTGATIYVTLEPCSHYGKTPPCADKIIEKKIGRVVVGALDPNPLVAGRGIEKIRNAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ E ++ V K + K A+S D I S I+ S+ +VH Sbjct: 128 VTTGVLAEESIKLNEIFMKYIVNKEPFVLYKSAMSLDGKIATVSGESQWISCEASRKEVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR Q AI+VG TVL DDP L CRL ++ P+R+++D ++ + ++++KTA Sbjct: 188 ELRHQYMAIMVGSQTVLDDDPMLNCRL--IEGKDPIRVVVDSSLRIPMTARLVKTARDIR 245 Query: 245 VII-VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ T + D + + ++ + + DLKKL L + S+L+EGGAA+A Sbjct: 246 TIVACTPSADEKKIKDLQNAGVEVLSIEAKDGHVDLKKLTEELGRMQIDSILLEGGAALA 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE- 353 + + ++D + +Y + +IG +P+ +E + G+D+C+ Sbjct: 306 AAAFGAGIIDKVQMYIAPKIIGGKTSRTPVGGKGVEHLSDAWQLKDITARNIGNDICITG 365 Query: 354 YIGKN 358 YI + Sbjct: 366 YIRRE 370 >gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAO1] gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PAO1] Length = 373 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 180/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51] gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51] Length = 367 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 190/375 (50%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + +++++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLDADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG- 286 +L + + +T + + + +EN + L KN DL++LL L + Sbjct: 241 HQLHPELALYQTPS-SVLRVASENAE----LCISAKN------GKLDLRELLAQLAQQQN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM603] gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio mimicus VM603] Length = 367 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 29/376 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ IL TVLAD+ L R + L + P R+ILD Sbjct: 181 ARKDVQRFRAQASTILSTSQTVLADNASLAVRWHDLPQSVQAQYAETDLRQPFRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T+ + + + +EN D L +N DL +LL L Sbjct: 241 HQLHPELALYQTSS-SVLRVASENAD----LCISAEN------GKLDLHELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V + VE G +A S I +LVD IILY + ++G G G E Sbjct: 290 VNQVWVEAGGQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ + K+ Sbjct: 350 CRMVGADLRIIATPKS 365 >gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158] gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158] Length = 373 Score = 336 bits (861), Expect = 4e-90, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDIDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGHDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D +L LD+++++ Sbjct: 182 ARADGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLIDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A A + I+ DL +L+ L RG+ L Sbjct: 241 G---APLLIFCGRLDAGSEARANALEARGAEIVSLANAHGKVDLPAMLSALGARGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDVAAPANLDA---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|153834818|ref|ZP_01987485.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] gi|148868746|gb|EDL67820.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] Length = 374 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D MS AL ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ Sbjct: 10 FTSQDFEMMSRALMLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ +GATAYVTLEPCSHYGR+PPCA+ +IE + RVV ++DP+ +V+GRG Q L Sbjct: 70 AGDKTQGATAYVTLEPCSHYGRTPPCAEGLIEAKVARVVCAMEDPNPKVAGRGFQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ESE ++ +I LK+A S D ++ S IT ++ Sbjct: 130 GVEVQVGLLESEAIELNKGFIKFMQTGMPYIQLKMAASLDGQSALSNGQSQWITSPKARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R L + P R+I D +L Sbjct: 190 DVQRYRALSGGILSTSKTVIDDNASLNVRWEDLPKSVQTQYPQEDVRQPPRVIFDRQSQL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 S D K+ T IIV++ D + DL L + + Sbjct: 250 SDDLKLFNTDGER--IIVSQGGD---------MAPELDENGQIDLAATLRNVASEYHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A S I + LVD +I+Y + ++G G L E + Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAQVIDLTITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str. 306] gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri str. 306] Length = 369 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 190/359 (52%), Gaps = 8/359 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 7 TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L + Sbjct: 67 AAGELARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLRE 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 127 AGIEVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V RA++ AIL G GTV+ADDP +T RL P+R++LD + I + Sbjct: 187 ADVQRWRARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRTLACRNIRQG 246 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + + +L + ++ DL +L +L RG+ + VEGGA ++ Sbjct: 247 D--APTLYLHGENVAAQSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLS 304 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + + LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363 >gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arsenophonus nasoniae] Length = 369 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 186/370 (50%), Gaps = 18/370 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++FD +FMS AL ++ TS NP+V C+IV+DG V+G G G HAE+ AL+ Sbjct: 1 MTTFDKQFMSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYG++PPCA +I GI+RVVV + DP+ +V+GRGL L Q Sbjct: 61 AGEKANGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++ E + +L R ++ LK+A S D +A S IT ++ Sbjct: 121 GIEVIHGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+P L R P+RI+LD + ++ Sbjct: 181 DVQSFRAQASAILTTSATVLADNPALNVRWKDFAPELQNIYPEESLRQPIRIVLDRNNQV 240 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + T ++ N K+ Y DL L+ L R + S+ Sbjct: 241 KPEH--FVTKSAGECWLIRSNPIAQNWFGDVKQITIPTYGKGIDLVLLMMQLAKRNINSI 298 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSP-LEEGYLEKNFMCVRRDYF 346 VE G +A + + LVD +I+Y + ++GE I P L++ F + + Sbjct: 299 WVESGPTLAGTLLTLGLVDELIVYVAPKILGESARGLINIPELQKLKDASAFEFINIELI 358 Query: 347 GSDVCLEYIG 356 D+ L Sbjct: 359 DIDLRLTLRP 368 >gi|269962351|ref|ZP_06176701.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi 1DA3] gi|269832847|gb|EEZ86956.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi 1DA3] Length = 374 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 178/367 (48%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D MS AL+ ++ + T+ NP+V C+IV+DG ++G G G PHAEV A+ Sbjct: 10 FTPQDFEMMSRALKLAKRGIYTTAPNPNVGCVIVRDGEIVGEGHHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG Q L Sbjct: 70 AGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGFQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E ++ ++ LK+A S D ++ S IT ++ Sbjct: 130 GVEVQVGLLENEAIELNKGFIKFMQTGMPYVQLKMAASLDGQSALSNGQSQWITSPKARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R + L P R+ILD +L Sbjct: 190 DVQRYRALSGGILSTSKTVIDDNASLNVRWDDLPNSVKAHYPQDEVRQPPRVILDRQSQL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 S D K+ T IIV++ D L + DL L + G + Sbjct: 250 SDDLKLFNTDGER--IIVSQGGDIAPELDKNGQ---------VDLAATLQAVASGTHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345 L VE GA +A S I + LVD +I+Y + ++G G G E + Sbjct: 299 LWVEAGATLASSLIKANLVDELIVYLAPKLMGSDGRGLIGALGLTEMAHVIDLTITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|169797510|ref|YP_001715303.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter baumannii AYE] gi|213155676|ref|YP_002317721.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB0057] gi|215484945|ref|YP_002327186.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB307-0294] gi|301346214|ref|ZP_07226955.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB056] gi|301512963|ref|ZP_07238200.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB058] gi|301595094|ref|ZP_07240102.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB059] gi|332851510|ref|ZP_08433507.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013150] gi|332866790|ref|ZP_08437194.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013113] gi|169150437|emb|CAM88334.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter baumannii AYE] gi|213054836|gb|ACJ39738.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB0057] gi|213986529|gb|ACJ56828.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii AB307-0294] gi|332729963|gb|EGJ61294.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013150] gi|332734398|gb|EGJ65518.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6013113] Length = 361 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVVQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +L+E Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ L+D +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQRARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae T7901] gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae T7901] Length = 363 Score = 335 bits (860), Expect = 5e-90, Method: Composition-based stats. Identities = 119/364 (32%), Positives = 183/364 (50%), Gaps = 11/364 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D FM ALR + + T+ NP V C++VKDG+VIG G G PHAEV AL Sbjct: 1 MDFSTADTVFMQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL 60 Query: 61 EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + ++ GATAYVTLEPCSH G++ PCA +++ GI R+V ++DP+ V+GRGL Sbjct: 61 KSVIDRQQLAGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDK 120 Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G++VD ++E E ++ R + K+A+S D M S ITG Sbjct: 121 LQRAGVVVDGPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ V LRA+S AI+ G+ +VL DDP LT RL E P+R+I+D ++ +++ Sbjct: 181 SARADVQKLRARSCAIITGVESVLLDDPLLTVRLPEC-ERQPIRVIVDSQLRVDPSAEVF 239 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGA 296 + ++ T + L + DL++LL L +L+E GA Sbjct: 240 RQP--GTTLVATCDAAKALNSELDTWPL-PEKMGHVDLRELLLGLAEHYQCNEVLLETGA 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A +F+ + LVD +I+Y + ++G P P+ G D + Sbjct: 297 KLAGAFVAAGLVDELIVYVAAKLMGSDARPLLELPILTMGASLELTIKDVRAVGPDWRIT 356 Query: 354 YIGK 357 I Sbjct: 357 AIPD 360 >gi|239831592|ref|ZP_04679921.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG 3301] gi|239823859|gb|EEQ95427.1| riboflavin biosynthesis protein RibD [Ochrobactrum intermedium LMG 3301] Length = 375 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 229/362 (63%), Gaps = 7/362 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V+S D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL E Sbjct: 13 VTSDDVRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAE 72 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSG+G L + Sbjct: 73 AGDAARGATAYVTLEPCAHHGRTPPCAETLVRAGVARVVAAATDPDERVSGKGFAILREA 132 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++ + L YL R +KR + LK+A+S D MIG G G V ITG I++ Sbjct: 133 GIEVVPGILADQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRRGEGQVAITGPIARA 192 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 Q H+LRAQ+D IL+GI T LADDP L CRL GL + SP+R++LD +L L S++++T Sbjct: 193 QSHILRAQTDVILIGIETALADDPVLNCRLRGLGQRSPVRVVLDGGLRLPLSSRLVQTTD 252 Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGA 296 P+ I E P I+ + D L +L+ L +G++S+LVEGGA Sbjct: 253 AQPLWIACGEEASPERRYELTAAGCRILATEADDCRIALPELMDDLAAQGISSVLVEGGA 312 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 VA SF++ LVD + ++RS + IG G+ E ++ F +R+ +G D EY+ Sbjct: 313 GVAKSFLDEGLVDRLAIFRSPVEIGSEHGVAVDGLETHIADEFKILRQARYGDDAYAEYV 372 Query: 356 GK 357 K Sbjct: 373 RK 374 >gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001] gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001] Length = 385 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 188/368 (51%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL ++ + T NP V C+IV++G VIG G T G HAE++A+++ Sbjct: 2 FSQTDFVHMERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E + +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPQAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP +I N D A R + I+ DL +L +L R V L Sbjct: 240 --AGAPTLIFCGNLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G P+ L EG ++ F V R Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGNDSMSMFNLSAPATL-EGRVKLAFHNVER- 355 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 356 -IGDDLRI 362 >gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae CT 5369-93] gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae CT 5369-93] Length = 365 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 184/372 (49%), Gaps = 28/372 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ + Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L R + LK+A S D +A S IT ++ Sbjct: 122 GIEVEVGLLEADARALNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+ L R + L P+R+ILD +L Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 + + +T +PV+ V + + A K DL++LL L V Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHNVNQ 290 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345 L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 LWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRM 350 Query: 346 FGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 VGADLRIIATPK 362 >gi|169634649|ref|YP_001708385.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter baumannii SDF] gi|169153441|emb|CAP02583.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter baumannii] Length = 361 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPRAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSSGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRPLHNVDIETVAQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +L+E Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ L+D +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|308048548|ref|YP_003912114.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Ferrimonas balearica DSM 9799] gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Ferrimonas balearica DSM 9799] Length = 373 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 190/376 (50%), Gaps = 26/376 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ DAR M+ AL +R T NP V C++V+DG V+G G G PHAEV AL Sbjct: 2 FSTDDARHMARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++ARGATAYVTLEPCSHYGR+PPC+Q +I+ G+ RVV + DP+ +V+GRGL L Sbjct: 62 AGDKARGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAA 121 Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +M +E + ++ R R + +K+A S D +A S ITG ++ Sbjct: 122 GIETQHGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 V LRA SDA++ G +VLAD+P + R L P+R+++D +L+ Sbjct: 182 DVQRLRAISDAVITGADSVLADNPSMNVRHAELGHWQSRISEADLQQPLRVVVDGKARLA 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRG 286 K++ + P+++ + ++++ L LL L + Sbjct: 242 PPLKLLDSD--GPLMLASLRGYD----CHWPASVSVWPAADNGEGKVALTALLDELGRQQ 295 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVR 342 + +LVE G+A+A +FI++ L D + LY++ ++G ++ + Sbjct: 296 INEVLVEAGSALAGAFISAGLWDELWLYQAPKLMGSEARGLLALPGVDTMAEVPSLTIQD 355 Query: 343 RDYFGSDVCLEYIGKN 358 G+D+ L + Sbjct: 356 VRRVGADLRLILTRQE 371 >gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1] gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1] Length = 369 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 180/367 (49%), Gaps = 27/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + MS AL ++ T+ NP+V C+I + V+G G G PHAEV AL Sbjct: 4 FSAIDYQMMSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHALRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG L + Sbjct: 64 AAERAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNMLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L + + LK+A S D +A S ITG ++ Sbjct: 124 GIEVSVGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPEARR 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKL 230 V RAQS AIL TV+ D+ L R + L H P R+ILD L Sbjct: 184 DVQAYRAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPDELRQPTRVILDRQNAL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289 S + K+ + +E D +A A N+ + + DL + L L + + Sbjct: 244 SRELKLFQ----------SEGDIIRVAQAGGDLNVTMNSANQLDLAETLQGLAKDQQINH 293 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 + +E GA +A S I +LVD +I+Y + ++G G L E Sbjct: 294 VWIEAGATLAGSMIQQQLVDELIVYLAPKLMGADGRGLIGALGLTEMQDVIELDIKDIRM 353 Query: 346 FGSDVCL 352 GSD+ + Sbjct: 354 VGSDIRI 360 >gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens NRL30031/H210] gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens NRL30031/H210] Length = 370 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 126/369 (34%), Positives = 191/369 (51%), Gaps = 17/369 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D + M AL ++ TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSALDTQMMQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGAAAKGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ + +L+R R + LK A S D ++ S ITG ++ Sbjct: 122 GIRTESGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P+L R + P RI+LD ++ LD ++ Sbjct: 182 DVQILRAESCAVLTGIGTVLADNPKLNVR-SFPTLRQPARIVLDSRLQIPLDCHLVTDTE 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGA 296 VI+ +D+ L ++I II +L L+ L G +LVE G+ Sbjct: 241 SPTVIVTLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSD 349 +A +F+ LVD I+LY++ ++G G P+ L G + + D Sbjct: 301 TLASAFLKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAALLSGG---PWQSQSVEIIVQD 357 Query: 350 VCLEYIGKN 358 + K+ Sbjct: 358 IKWVLRKKS 366 >gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 371 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 191/371 (51%), Gaps = 19/371 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D ++M AL ++ + L + NP V C+IVKDG VIGRG T G HAE+QA+ +A Sbjct: 3 SAVDHQWMGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADA 62 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G++ G+T YVTLEPCSH GR+PPC ++ +V+V + DP+ VSG GL L+ Sbjct: 63 KANGKDIAGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLT 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++ESE + +++R + +KIA S D + S ITG ++ Sbjct: 123 DAGIEVQCGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RAQ+ AI+ G+GTV DDP L R P RII+D + +++I+ Sbjct: 183 RADGHHWRAQACAIVTGVGTVKEDDPSLNVREVS-THRQPWRIIVDSKLETPPNAQILND 241 Query: 240 ALLAPVIIVTENDDPV----LALAFRKKNINIIYC----DCRDLKKLLTILV-GRGVTSL 290 + VIIV D V A F+K+ I +I DL KL T L R + + Sbjct: 242 LQDSGVIIVCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEI 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF 346 +E G + S + VD ++LY + +GEG +P+ L +++ + + Sbjct: 302 HIESGFKLNGSMLREGCVDELLLYYAPFFMGEGIGMANVPT-LPNLSTREDWRILDQSMI 360 Query: 347 GSDVCLEYIGK 357 G+D+ + I Sbjct: 361 GTDLRIRLIKN 371 >gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis MSMB43] Length = 374 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 114/362 (31%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPC+ +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ A+L GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 AREDGHKWRARACAVLTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L ++ A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDSQSEARAQALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 369 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 188/357 (52%), Gaps = 8/357 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ ALR + T NP V C+IV+DG +G G G PHAEV AL A Sbjct: 9 SADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALRAA 68 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L + G Sbjct: 69 GELARGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAG 128 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +M+++ + +L+R R + +K+ S D +A S IT ++ Sbjct: 129 IDVLSGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARAD 188 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V RA++ AIL G GTV+ADDP +T R+ P+R++LD + I + Sbjct: 189 VQRWRARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGD- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + D +L + ++ DL +L +L RG+ + VEGGA ++ + Sbjct: 248 -APTLYLHGEDVSAPSLDDAQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 307 LLQAGLVDELLVYMAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRLRY 363 >gi|157691490|ref|YP_001485952.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus pumilus SAFR-032] gi|157680248|gb|ABV61392.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus pumilus SAFR-032] Length = 361 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 189/360 (52%), Gaps = 10/360 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL+ A E Sbjct: 3 DDVFYMELAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALQMARE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A+GA YVTLEPCSHYG++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI Sbjct: 63 KAKGAHLYVTLEPCSHYGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGMTMLKQAGIE 122 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD + + E + ++ LK A+S D I A S ITG ++ +V Sbjct: 123 VDEGICKQEADRLNVPFFHFIQSDFPYVILKSAISLDGKIATADLESKWITGTEARKEVQ 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR ++DA++ G+ T++ DD L + + + P+R+ILD ++ L +K + Sbjct: 183 QLRQEADAVITGVETIIQDDAGLIVKDSNMT--QPIRVILDSTLRIPLHAKCLTDRRAET 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I ++ D +K + D+ +L +L R V S+LVE G +V+ S Sbjct: 241 IICISRMYDQKKYELLIEKGHQVYITSGEERTDIHDVLRMLKERSVMSVLVEAGGSVSAS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ + LV+ ++Y + ++IG P+ E ++K +R +DV +GK+ + Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKNAPTFFEGDGVKKLKEAIRP----ADVEYSMVGKDFKM 356 >gi|83955709|ref|ZP_00964289.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1] gi|83840003|gb|EAP79179.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. NAS-14.1] Length = 367 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 187/364 (51%), Gaps = 11/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDRDPRVSGKGIAILRAAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IVD ++E E + + R E R +TLK+A S D I A S IT ++ V Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLANSFDGRIATASGESQWITAPPARRVV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R++ DA++VG GT DDP LT R G P RI++ + L+ + +TA Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTT-RQPTRIVVSNGLDIPLNGALARTANDI 240 Query: 244 PVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P+I+ P L + +I C + D +L L G+T + EGG + Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD ++ + + + +G G+P+ L+ F G D+ + Sbjct: 301 AATLLKADLVDQLVGFTAGLALGADGLPAIAPLQLQRLAQAPRFTLTETSRIGPDLLHIW 360 Query: 355 IGKN 358 N Sbjct: 361 SRSN 364 >gi|163738649|ref|ZP_02146063.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis BS107] gi|161387977|gb|EDQ12332.1| riboflavin biosynthesis protein RibD [Phaeobacter gallaeciensis BS107] Length = 358 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 129/356 (36%), Positives = 186/356 (52%), Gaps = 11/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL++AG+ ARGA Sbjct: 1 MSLALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALQQAGDLARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YV+LEPCSH G++PPCAQ +I G+ RVV ++D D RVSG G L GI + + Sbjct: 61 TVYVSLEPCSHTGKTPPCAQALINAGVARVVAAIEDSDPRVSGHGFAMLRDAGIPVTTGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + + + R +TLK+A S D I A S ITG ++ VH +RA+ Sbjct: 121 CSDAAAWDHAGFFLKTEQGRPFVTLKLASSFDGRIATAAGESKWITGSEARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT ADDP LT R G+ P+R+++ H L L ++ ++A PV I Sbjct: 181 HDAVMVGGGTARADDPSLTVRDLGV-ARQPVRVVISRHLDLPLMGQLARSARDIPVWICH 239 Query: 250 -ENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ ++ C L+ +L L G+T + EGG+A+A S + Sbjct: 240 GAGADAERLRAWEGLGAVLLPCAADGLQLDAGDVLQQLGQAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 LVD +I + + + IG G+ S L+ F + G+D+ + Sbjct: 300 QDLVDELIGFTAGLGIGGDGLSSIGSLGLDALAEAPRFDLIDVRPVGADIQHRWTR 355 >gi|260434096|ref|ZP_05788067.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis ITI-1157] gi|260417924|gb|EEX11183.1| riboflavin biosynthesis protein RibD [Silicibacter lacuscaerulensis ITI-1157] Length = 366 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 132/365 (36%), Positives = 202/365 (55%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D R+M+ AL R G+ NP+V C++VK+G ++GRG T GG PHAE AL + Sbjct: 1 MTDTDKRYMALALSLGRRGQGMCWPNPAVGCVVVKNGRIVGRGWTQPGGRPHAETVALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG+TAYV+LEPC+H+G++PPCAQ +I+ G+ RVV ++D D RV+G G + L Sbjct: 61 AGLLARGSTAYVSLEPCAHHGKTPPCAQALIDAGVARVVSAIEDSDPRVAGLGFEMLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ + +LTR + R +TLK+A S D I + S IT S+ Sbjct: 121 GVDVTTGVLADQAARDHAGFLTRTEQGRPFVTLKLACSFDGRIATSTGQSKWITSPQSRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G+ + P+R+++ H + L ++ ++A Sbjct: 181 VVHAMRARHDAVMVGAGTARADDPSLTVRDLGVAQ-QPVRVVVSRHLDVPLLGQLARSAS 239 Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 PV + + DP A A+R +I C + D LL L G+T + EGG+ Sbjct: 240 EVPVWLCHGPSPDPERARAWRGLGAKLIPCALQDHHIDPADLLQQLGQEGLTRVFCEGGS 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 A+A S + + LVD ++ + + + IG G+P+ L E F V G DV Sbjct: 300 ALAASLLAADLVDELVGFTAGMAIGAEGLPAIGAMGLSELADAPRFDLVETKIVGPDVLQ 359 Query: 353 EYIGK 357 + Sbjct: 360 VWRRP 364 >gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M] gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M] Length = 385 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 131/368 (35%), Positives = 190/368 (51%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL +R + T NP V C+IVK+G VIG G T G HAE++A+++ Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAIL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP +T R P R+++D ++S ++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLEVSPHAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP +I N D A A R++ I+ DL LL +L R V L Sbjct: 240 --AGAPTLIFCGNLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G G P L EG ++ F V R Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLGAPETL-EGRVKLAFHNVER- 355 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 356 -IGEDLRI 362 >gi|261253738|ref|ZP_05946311.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio orientalis CIP 102891] gi|260937129|gb|EEX93118.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio orientalis CIP 102891] Length = 368 Score = 335 bits (859), Expect = 7e-90, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 183/376 (48%), Gaps = 29/376 (7%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP + D MS A+ ++ + T+ NP+V C+IV+ ++G G G PHAEV A Sbjct: 1 MPLFTPQDFTMMSRAIELAKGGIYTTAPNPNVGCVIVQGDEIVGEGFHYRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AG+ A GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG+Q L Sbjct: 61 LRMAGDRAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPKVAGRGIQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E + + A++ + + LK+A S D +A S IT Sbjct: 121 RDAGITVEVGLLEQQAESLNPAFIKQMKTGMPFVQLKMAASIDGQTALANGQSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPH 227 ++ V RA+S AIL TV+ D+ L R + L + P+R+ILD + Sbjct: 181 ARQDVQKYRAKSGAILSTSKTVIEDNASLNVRWDDLPLSLQEAYSQQELRQPVRVILDRN 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L+ D K++ T IIV E D L + DL + L Sbjct: 241 HQLTSDLKLMSTEGER--IIVAEGQDLEPILNDEQ---------LIDLAATFSALAKQHH 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVR 342 + L VE GA +A S I + LVD +ILY + ++G LE + Sbjct: 290 INHLWVEAGATLASSLIKANLVDELILYLAPKIMGSDGRGLLGALGLESMAETIDLNVKD 349 Query: 343 RDYFGSDVCLEYIGKN 358 G D+ + KN Sbjct: 350 VRQVGQDIRITATLKN 365 >gi|255261262|ref|ZP_05340604.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62] gi|255103597|gb|EET46271.1| riboflavin biosynthesis protein RibD [Thalassiobium sp. R2A62] Length = 363 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 187/361 (51%), Gaps = 12/361 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL R +G NPSV C+IVKDG V+GRG T GG PHAE AL AG Sbjct: 3 DARWMALALELGRRGLGRVWPNPSVGCVIVKDGRVVGRGWTQDGGRPHAETHALAAAGTA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARG+ YVTLEPCSHYG +PPCAQ +I+ G+ RV+V D D RVSGRG L GI + Sbjct: 63 ARGSDVYVTLEPCSHYGHTPPCAQALIDAGVSRVIVAAGDSDPRVSGRGYAMLRDAGICV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ESE + L + R R +TLK+A S D I A S ITG ++ VH+ Sbjct: 123 DIGLCESEARNDLAGFFKRIETGRPWVTLKLANSFDGRIATASGDSQWITGADARRYVHM 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+ DA++VG GTV AD+P L R G+ P+R++L L D K+ TA PV Sbjct: 183 SRARHDAVMVGAGTVRADNPSLNVRDLGV-ARQPIRVVLSRKLDLPTDCKLAVTAGDPPV 241 Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVA 299 I+ +D + N + D L L +G+T + EGG A+A Sbjct: 242 WILHSDDASQSRIEDWTGHGANCLAAGPEAHRQLDPSACLQTLGAQGLTRVYCEGGGALA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYI 355 S + + L+D +I Y + + IG G PS G F + G+DV + Sbjct: 302 ASLLGAGLIDEVIGYTAGVAIGAEGTPSLGALGLSVLAEAPRFQLLETRAIGADVLHRWR 361 Query: 356 G 356 Sbjct: 362 P 362 >gi|225848913|ref|YP_002729077.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense Az-Fu1] gi|225644745|gb|ACN99795.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium azorense Az-Fu1] Length = 366 Score = 335 bits (859), Expect = 8e-90, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 186/359 (51%), Gaps = 15/359 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 +M+ AL ++ G T NP+V +IVKDG +IG+G G PHAE +A+++A G Sbjct: 5 EYYMNIALDLAKERKGYTHPNPTVGAVIVKDGKIIGKGFHYKAGMPHAEREAIKDAKSKG 64 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + RG+T +V+LEPC HYG++PPC + I+E GI +VVV DP+ V+G+G++ L QKG+ Sbjct: 65 FDLRGSTIFVSLEPCCHYGKTPPCTEAILEEGISKVVVATLDPNPLVAGKGVEILKQKGV 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++E + + + +KR + +K+A + D I S IT S+ Sbjct: 125 EVVLGVLEKQAQKINEDFFIYITQKRPFVHIKVAQTIDGKIATKTGSSKWITSQESRKYA 184 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H+LR Q+ A+LVG T D+P LT R E P+R++LD K+ L+ I Sbjct: 185 HILRNQATAVLVGSNTAQLDNPSLTVRY-IQTERQPIRVLLDSKLKVPLNYNIYSKEAD- 242 Query: 244 PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 ++I ++ DP ++ N+ + D + +K +L IL + LLVEGG V Sbjct: 243 TIVITSKEADPYKKEILSKQSNVKLYTLDTYNGKFKIKDILEILYQNQIVHLLVEGGKEV 302 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE 353 SFI D I L+ + ++GE GI S G + N FG D E Sbjct: 303 ITSFIKEDFWDKISLFTAPKIVGEDGISSFGSLGVNDINESIKLKVEDFKRFGDDFYFE 361 >gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal) and 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Regiella insecticola LSR1] gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal) and 5-amino-6-(5-phosphoribosylamino) uracil reductase (C-terminal) [Candidatus Regiella insecticola LSR1] Length = 381 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 186/378 (49%), Gaps = 33/378 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL--EEAG 64 D ++M+ AL + T+ NP+V C+IV++G ++G G G PHAE+ AL +A Sbjct: 9 DKKYMARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKAK 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +EAR AT YVTLEPC H GR+PPC +I GI+RVVV + DP+ +VSGRG+ L Q GI Sbjct: 69 DEARNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAGI 128 Query: 125 IVDRM----MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 +VD + ++++ + +L R + ++ LK+A S D MA S IT ++ Sbjct: 129 VVDYIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQSDAIL T+LAD+P LT R L P RII+D + Sbjct: 189 QDVQNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCNR 248 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC------RDLKKLLTILV 283 + ++I + +T + NI ++ DL+ + L Sbjct: 249 VMPCHRVITEPGACLLARMTAD------QQIWPDNIEQLFLPPSEEEKRIDLRLFMMELS 302 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFM 339 R + S+ VE GA +A + + +VD +ILY + ++G+ + +++ NF Sbjct: 303 RRQINSIWVEAGATLAGALLQIGVVDELILYLAPKLLGDNARGLCVLPGIDKLNQAHNFT 362 Query: 340 CVRRDYFGSDVCLEYIGK 357 GSD+ L Sbjct: 363 LQEVCQIGSDLRLRLTPN 380 >gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa PA7] gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7] Length = 373 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 183/373 (49%), Gaps = 22/373 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++V+DG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGEKARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVHSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAELEIDDIR 356 Query: 345 YFGSDVCLEYIGK 357 G D + + Sbjct: 357 AVGDDWLVTARPR 369 >gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis H44/76] gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis H44/76] Length = 361 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 124/359 (34%), Positives = 183/359 (50%), Gaps = 13/359 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M ALR + TS NP V C+I ++G+G G PHAEV AL +AGE A+G Sbjct: 1 MMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQAGEMAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 ATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTECG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E + + +L+R +R + LK AVS D ++ S ITG ++ V +LRA Sbjct: 121 LLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +S A+L GIGTVLAD+P L R P RI+LD +L +S ++ T +P I Sbjct: 181 ESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPPNSHLV-TDGQSPTYIA 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T + +R+ I DL L+ +L G ++VE G+ + +F Sbjct: 239 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYIGK 357 + L D I+LYRS ++G G L E + V + G ++ + Sbjct: 299 LAENLADEIVLYRSPKILGSGKDLFSLLENRAALSAPPLWTPVSSEILGHNIKTVFRKN 357 >gi|257462874|ref|ZP_05627280.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Fusobacterium sp. D12] gi|317060498|ref|ZP_07924983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D12] gi|313686174|gb|EFS23009.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium sp. D12] Length = 359 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 185/358 (51%), Gaps = 11/358 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL+ ++ G + NP V ++VK+G +IG+G G PHAEV AL+EAG EA Sbjct: 4 QEYMHFALKLAKKGEGKVNPNPLVGAVVVKNGNIIGQGYHHQYGGPHAEVYALQEAGTEA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 + AT YVTLEPCSHYG++PPCA+ II+ GI+R ++ ++DP+ V+G+G+ + + GI + Sbjct: 64 KDATIYVTLEPCSHYGKTPPCAKKIIDSGIKRCIIAMEDPNPLVAGKGIAMMKEAGIQVE 123 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E+E ++ +L K + LK ++ D + S IT ++ +V L Sbjct: 124 VGLCETEARVLNRVFLKYISTKTPFLFLKCGITLDGKLATRSFQSKWITNETARERVQYL 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + I+VGI TV+ D+P L R+ P RII+DP+ ++ L SK++ +I Sbjct: 184 RNKYMGIMVGIHTVIEDNPSLDARIE--NGRDPYRIIVDPYLEIPLSSKLLHKKDKKVII 241 Query: 247 IVT-ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I + + K + I+ R +L + GV S+L+EGG + + Sbjct: 242 ITSLSEKETDKRKELEKLELRFIFLKERIFSFSNMLEEIGKLGVDSVLLEGGGQLISAAF 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDVCLEYIG 356 ++D ++ + ++G+ S + E + V+ +G++ +E+ Sbjct: 302 QENVIDGGEIFIAPKILGDEKAVSFISGFCKESMEEAISLPNVKVHQYGNNCSMEFYR 359 >gi|270308361|ref|YP_003330419.1| riboflavin biosynthesis protein, 5-amino-6-(5-phosphoribosylamino)uracil reductase, diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. VS] gi|270154253|gb|ACZ62091.1| riboflavin biosynthesis protein, 5-amino-6-(5-phosphoribosylamino)uracil reductase, diaminohydroxyphosphoribosylaminopyrimidine deaminase [Dehalococcoides sp. VS] Length = 365 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 180/358 (50%), Gaps = 15/358 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++MS AL ++ +G S NPSV +IVK+G V+G+G T G HAE+ AL++A E+A+ Sbjct: 2 KYMSQALSLAKLAIGQVSPNPSVGAVIVKNGEVVGQGFTQPPGGDHAEIVALKQAAEKAK 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD- 127 GA YVTLEPC H GR+PPC IIE GI+ V + D + VSG+G + L GI V Sbjct: 62 GAALYVTLEPCCHQGRTPPCTGSIIESGIKEVYIATLDDNPLVSGKGKKELENAGIKVHL 121 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 MME E + AY +T K A+S D G S I+ S++ H +R Sbjct: 122 GMMEREARQMNEAYFKHITTGMPFVTAKYAMSLDGKTGTRTGDSKWISNEESRHFAHYIR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 SD I+ G+ T+L DDP LT R+N G P R+I+D + + L S + Sbjct: 182 HISDVIMAGLNTILKDDPHLTARVNCGRGGTSHSQPTRVIIDDNGRAPLSSNVFHVPGN- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ V + A+ + ++ DLK LL L GVTS+LVEGG V Sbjct: 241 TIVAVAKGLTLEEKQAYDEVGAKVVELPDERGLVDLKALLRYLGQNGVTSVLVEGGGIVL 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 S + +LVD ++++ + I+IG P+ E + FG DV + Sbjct: 301 GSLFDLKLVDKVLVFVAPIIIGGKDAKIPVAGLGAELITDSAKLRDITTTAFGQDVLI 358 >gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus c2] gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus c2] Length = 386 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 187/370 (50%), Gaps = 18/370 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D R+M AL + + T NP V C+IV G V+GRG A G PHAEV AL+E Sbjct: 10 FSPDDTRWMREALALAERGLTTTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQE 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATAYVTLEPC+H GR+P CA + + G+RRVV + DPD RV+G G L Sbjct: 70 AGERAKGATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E + +L+R R +T+KIA S D +A S ITG +++ Sbjct: 130 GVQVESGLLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARH 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN------GLQEHSPMRIILDPHFKLSLDSK 235 V LRA+ A+L G+ TVL DD L RL+ P+R++LD +L + Sbjct: 190 DVQFLRARHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAP 249 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLL 291 I I + D + + + ++ DL +L L +G++ +L Sbjct: 250 IFDVQGEVR-IYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVL 308 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYF 346 VE G +A +F++ VD +I+Y++ +++G P SP+ + Sbjct: 309 VESGPKLAGAFVDQGWVDELIIYQAPVLLGHKAQPCLDLASPI-RLDDAPRWQIRDTTPV 367 Query: 347 GSDVCLEYIG 356 G D+ + + Sbjct: 368 GQDIRITLVP 377 >gi|83941150|ref|ZP_00953612.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36] gi|83846970|gb|EAP84845.1| riboflavin biosynthesis protein RibD [Sulfitobacter sp. EE-36] Length = 367 Score = 334 bits (858), Expect = 9e-90, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 189/364 (51%), Gaps = 11/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S DARFM+ AL R G NP+V C+IV+ G ++GRG T GG PHAE QAL +AG Sbjct: 2 SDDARFMALALSLGRRGQGAVWPNPAVGCVIVQQGRIVGRGWTQPGGRPHAEPQALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GAT YVTLEPC+H G++PPCA ++ RVV+ D D RVSG+G+ L GI Sbjct: 62 PAAQGATVYVTLEPCAHTGKTPPCADALVAAKPARVVIACTDSDTRVSGKGIAILRAAGI 121 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 IVD ++E E + + R E R +TLK+A S D I A S IT ++ V Sbjct: 122 IVDVGVLEDEARADHLGFFLRVDEGRPMVTLKLASSFDGRIATASGESQWITAPPARRVV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R++ DA++VG GT DDP LT R G P RI++ + L+ + +TA Sbjct: 182 HAMRSRHDAVMVGGGTARQDDPSLTVRDLGTT-RQPTRIVVSNGLDIPLNGTLARTANDI 240 Query: 244 PVIIVTENDDP-VLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 P+I+ P L + +I C + D +L L G+T + EGG + Sbjct: 241 PLILCHGPKAPAELIGTWESLGATLISCAPKMGQIDADDMLQQLGRHGLTRIFCEGGGGL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEY 354 A + + LVD ++ + + + +G G+P +PL+ L + F G D+ + Sbjct: 301 AATLLKENLVDQLVGFTAGLALGADGLPAIAPLQLPRLAQAPRFTLTETSRIGPDLLHIW 360 Query: 355 IGKN 358 N Sbjct: 361 HRSN 364 >gi|33240788|ref|NP_875730.1| pyrimidine reductase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33238317|gb|AAQ00383.1| Pyrimidine reductase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 367 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 115/358 (32%), Positives = 180/358 (50%), Gaps = 10/358 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M A+ + G TS NP V +I+ + ++G G G PHAE+ A+E+AG Sbjct: 11 EPWMFRAINLASLAEGQTSPNPLVGAVILDEKNRLVGEGFHLRSGEPHAEIGAIEQAGSL 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G T V LEPC H G++PPC I+ GI+RVVV + DPD RVSG+G+ +L + GI + Sbjct: 71 AKGGTLLVNLEPCCHRGKTPPCTDAILRSGIKRVVVAIQDPDQRVSGKGIAFLKESGIEV 130 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E E A++ R R TLK A+S D IG++ S I+G S+ +VH Sbjct: 131 VTGILEKEAAFLNRAFIFRNRTGRPWGTLKWAMSFDGRIGLSNGKSKWISGEKSRKRVHS 190 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA++DA++VG GTV +D+P LT R G+ + P+R++ L ++++ T LA Sbjct: 191 LRAKNDAVIVGGGTVRSDNPLLTTR--GIADIEPLRVVCSSTLDLPKEAQLWNTE-LAKT 247 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + L + + K++ L RG +L E G+++A I Sbjct: 248 LIFYGPESDARCLENLPSGPERLCLEENTPIKVMEALAQRGCNQVLWECGSSLATKAIQQ 307 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358 V + L+ S ++G +PL + V + G D L + N Sbjct: 308 NCVQELSLFLSPKLLGGVSAMTPLADFGFSSMEQVFKLKEVSSNKSGEDFVLNMLFDN 365 >gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 378 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 129/364 (35%), Positives = 186/364 (51%), Gaps = 20/364 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVT 288 LD+ + ++VT + + + D DL++L+ L RGV Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVN 301 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F LVD L+ + +G P PL + V Sbjct: 302 EVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRA 361 Query: 346 FGSD 349 G+D Sbjct: 362 VGND 365 >gi|317122797|ref|YP_004102800.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter marianensis DSM 12885] gi|315592777|gb|ADU52073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermaerobacter marianensis DSM 12885] Length = 427 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 139/357 (38%), Positives = 186/357 (52%), Gaps = 15/357 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM ALR + G T NP V +IV+DG V+G G G PHAE++AL AGE Sbjct: 35 DRAFMRRALRLASRARGRTHPNPMVGAVIVRDGEVVGEGFHRRAGEPHAEIEALRMAGER 94 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPC HYGR+PPC II G+RRVVV + DPD RV+GRG+ L+ GI V Sbjct: 95 ARGATLYVTLEPCCHYGRTPPCTGAIISAGLRRVVVAMVDPDPRVAGRGIAALAAAGIEV 154 Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E E AY+ + R +T K A++ D I A S +TG ++ H Sbjct: 155 AVGLEEEAARRLNEAYIVHRRLGRPMVTAKYAMTLDGRIATARGDSRWVTGIRARRWAHR 214 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP- 244 LR + DAILVG+GTVLADDP LT RL P+RI+LD H + +++++ A +P Sbjct: 215 LRDRVDAILVGVGTVLADDPLLTVRL-HPGGRDPLRIVLDSHARTPPTARVVQVARQSPA 273 Query: 245 --VIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 + VT + ++ L LL +L GV LLVEGGA+ Sbjct: 274 PTWVAVTPGAPAARVRGLEEAGARVVTLPAGPDGRVSLPHLLRLLAAEGVVHLLVEGGAS 333 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSD 349 V +F +RLVD ++ + + G P P+ +E+ V GSD Sbjct: 334 VHGAFFGARLVDRVVALVAPKLAGGAEAPGPIAGPGVERMADAPVLRRVFARRLGSD 390 >gi|195952880|ref|YP_002121170.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1] gi|195932492|gb|ACG57192.1| riboflavin biosynthesis protein RibD [Hydrogenobaculum sp. Y04AAS1] Length = 357 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 110/322 (34%), Positives = 173/322 (53%), Gaps = 2/322 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + + G T NP+V LIVKD ++ G G HAE+ AL+ Sbjct: 1 MINKDKYYMKLALEEAYKYKGQTHPNPAVGVLIVKDDKILSIGAHKKAGTDHAEIVALKN 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E+ +GAT YVTLEPCS +G++PPC II GI++VV+ DP+ +VSG+G++WL Sbjct: 61 AQEDVKGATMYVTLEPCSFHGKTPPCCPAIISSGIKKVVIGSVDPNPKVSGKGIEWLKSA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ E + +KR ITLK A+S D + S I+ ++ Sbjct: 121 GIEVEVGVLKEECDKLNEDFFVYITQKRPFITLKCAMSLDGKLAKENKDSKWISSEKARK 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H+ R S AILVGI T+L D+P+LT RL G E+ P +++DP+ + D+ I K Sbjct: 181 ISHIYRKYSSAILVGINTILKDNPKLTVRLEG-NEYQPYSVVIDPNLDIPYDANIFKKGY 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +IIV+ D + + ++ + D+K +L L + + VEGGA Sbjct: 240 ENIIIIVSTKTDDKKKEYLKSLGVRLLELESFDIKSILKALYEIDIMHIFVEGGAYTISR 299 Query: 302 FINSRLVDSIILYRSQIVIGEG 323 F+ + D ++++R IG+G Sbjct: 300 FLEENMWDKMLIFRGYKFIGKG 321 >gi|269798015|ref|YP_003311915.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008] gi|269094644|gb|ACZ24635.1| riboflavin biosynthesis protein RibD [Veillonella parvula DSM 2008] Length = 404 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 181/391 (46%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DDVVYMKRAIELAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +V+V DP+ VSG+G++ L + GI Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVIVGSTDPNPLVSGKGMELLREAGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +T+K A+S D I + S IT S+ H Sbjct: 123 VVCPVCSDECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATSTGQSQWITNESSRRDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------------HSPMRIILDPHF 228 +LRA DA+LVGIGT+LAD+P+L CRL + H P IILD Sbjct: 183 VLRATHDAMLVGIGTILADNPQLNCRLTDSELSDALLDKSILDEPITIHQPDVIILDSLG 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272 + S++ I+V++ A + + Sbjct: 243 RTPTTSQVFDVENRKVHILVSKGCPKERIQALENVGTIVTVVESISTRKSKSTDVVIDIK 302 Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG + Sbjct: 303 KLSIDDILTKLGELGYTSILVEGGSAIISSFVETMNFDKVVTYIGNTIIGGNDATPAVGG 362 Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 E + +++ +E + Sbjct: 363 RGFESLEASPQLTFTKTKVLDNNIRIEAYRQ 393 >gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia xenovorans LB400] gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia xenovorans LB400] Length = 389 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL +R + T NP V C++VK+G VIG G T G HAE++AL++ Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPC +IE + VV ++DP+ VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAIL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP +T R P R+++D + +++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVD-TPRQPQRVLIDSQLDVPPEAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP +I N D A A R + I+ DL +L +L R V L Sbjct: 240 --AGAPTLIFCGNLDQRHTDRANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDY 345 VE G + S + VD +++Y + ++G + + ++ +F V D Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGMDSMSMFSLTTPETLDDRVKLHFHAV--DR 355 Query: 346 FGSDVCL 352 G D+ + Sbjct: 356 IGDDLRI 362 >gi|313675594|ref|YP_004053590.1| riboflavin biosynthesis protein ribd [Marivirga tractuosa DSM 4126] gi|312942292|gb|ADR21482.1| riboflavin biosynthesis protein RibD [Marivirga tractuosa DSM 4126] Length = 359 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 179/357 (50%), Gaps = 15/357 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D FM AL+ + + S NP V C+IV DG VIG G G PHAEV A+ Sbjct: 10 MSKQDELFMQRALQLAGYGKATASPNPMVGCVIVLDGKVIGEGWHKKAGEPHAEVMAIRS 69 Query: 63 A--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E + +TAYVTLEPC+HYG++PPCA+ ++E +++VV+ DP+ V+G+G+Q L Sbjct: 70 VENPELLKSSTAYVTLEPCAHYGKTPPCAELLVEKQLKKVVIGAVDPNPLVAGKGIQILK 129 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + ++E E A+ T +KR +I LK A + D I S I+ +S Sbjct: 130 KAGIEVESAVLEQECLEVNKAFFTYMQKKRPYIILKWAQTSDGFIARENFDSKWISNPLS 189 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH R ++DAIL+G T DDP+LT R +P+R+++D L D KI Sbjct: 190 RQIVHKWRTETDAILIGKNTAKYDDPQLTAR--DWSGKNPIRLVIDHDLTLGNDLKIFDG 247 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAV 298 I D + +K I I D L+ +L L + S+L+EGGA Sbjct: 248 EQ--KTIFFHSQDQKI-----ERKGIAAIKLSKEDFLRDMLNYLHQEKIQSVLIEGGAQT 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SFI++ L D ++ + + +G + L+ L ++ +DV Y Sbjct: 301 VQSFIDAGLWDEARIFTASVSFEKGIKAAELKSHQLVSQENIQDKNQ--TDVLTTYR 355 >gi|42520555|ref|NP_966470.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410294|gb|AAS14404.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila melanogaster] Length = 360 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 185/354 (52%), Gaps = 6/354 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCIIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI + Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M+ E K + T + R I K+A + D I S IT ++N VH Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACKVATTLDGKIATFTGDSKWITSENTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR + DAI++G T++ DDP LTCRL GL SP+R+I+D +L + I KTA Sbjct: 183 LRTKYDAIMIGSNTLINDDPLLTCRLPGLGSRSPIRLIIDSQGRLKEEHNIAKTADKVIT 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKL-LTILVGRGVTSLLVEGGAAVAHSFIN 304 ++T + +N LK + L ++ G+T LLVEGG + + Sbjct: 243 WVITNKEVEKKIKNINYLVVNSSNAGKVCLKDMALKLVSEIGITRLLVEGGGVLITELLK 302 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 L+D +I+ RS ++G P + G N F + F D+ + Sbjct: 303 CNLIDRLIICRSGKILGNDATPFVGDLGIQFINNCYQFKKTKIIEFSEDIVEVW 356 >gi|238026457|ref|YP_002910688.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae BGR1] gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae BGR1] Length = 372 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 180/365 (49%), Gaps = 19/365 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL S + T+ NP V C+IVKDG+VIG G T G HAEVQA+++ Sbjct: 2 FSDTDFAHMQRALDLSSRGMYTTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+GR+PPCAQ +I+ + RV+ ++DP+ VSGRGL L Sbjct: 62 ARSRGHDLRGATVYVTLEPCSHFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +KIA S D + S ITG Sbjct: 122 RDAGIEVRCGLLAQEAHEMNIGFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTVL DDP LT R P+R+++D L LD+K++ Sbjct: 182 ARRDGHAWRARACAILTGIGTVLEDDPRLTVRDID-TPRQPLRVLVDSRLDLPLDAKLL- 239 Query: 239 TALLAPVIIVTENDD---PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP+++ D A A R + +I DL +L L G+ L Sbjct: 240 --AGAPILVFCGRLDAASEARAAALRDRGAEVIPLADANGKVDLPAMLAALGRHGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347 VE G + S + VD +++Y + ++G + D G Sbjct: 298 VEAGHKLNGSLLREGCVDELLVYLAPTLLGPEAAGMFNIATPPTLAQRTVLQYHSIDRIG 357 Query: 348 SDVCL 352 D+ + Sbjct: 358 DDLRV 362 >gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6] gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6] Length = 368 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ Sbjct: 4 FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + Sbjct: 64 AGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 124 GIEVSVGLLQAEAEALNPAFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQS AIL TVLAD+ L R + L P R++LD +L Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAEL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-VTS 289 S + K+ +T +I+ + D P + DL +L L + Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPA----------PLDEHGQIDLPQLFAQLSQTQLINH 292 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A I +LVD +I+Y + ++G G L+ + Sbjct: 293 LWVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRM 352 Query: 346 FGSDVCL 352 G D+ + Sbjct: 353 VGPDIRI 359 >gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC 51599] gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC 51599] Length = 385 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 180/366 (49%), Gaps = 19/366 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R M A+ + V T NP V C+IV+DG V+G G G PHAEV AL++A Sbjct: 3 TEDDRRAMQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYVTLEPCSH+GR+ PCA ++E G+ RVV ++DP+ V+G+GL L G Sbjct: 63 GERARGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E E + +++R R + LK A S D I + S ITG ++ Sbjct: 123 IDVRCGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA++ AIL G GTV AD+P LT R + E P+R+++D ++S + I Sbjct: 183 GHAWRARASAILTGSGTVQADNPALTVR-HVATERQPVRVLVDARLQVSEHAAIF---GP 238 Query: 243 APVIIVTE----NDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293 + D + + ++Y DL L+ + G + VE Sbjct: 239 GETWVAHAMPPDWPDDGHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349 GA + + I + VD ++LY + ++G+ G+P+ + G D Sbjct: 299 AGAGLNAALIQAGCVDELLLYVAPALLGQ-GLPAFALPAVPGLDDRIRLAWREATPVGDD 357 Query: 350 VCLEYI 355 + L Sbjct: 358 LRLRLR 363 >gi|56475984|ref|YP_157573.1| riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Aromatoleum aromaticum EbN1] gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD: diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase protein [Aromatoleum aromaticum EbN1] Length = 366 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 180/361 (49%), Gaps = 13/361 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D M+ AL+ + + T+ NP V C+++K+G ++G G G PHAEV AL Sbjct: 1 MTYSEADHVAMARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARGATAYVTLEPC+H+GR+PPCA +I G+ RVV ++DP+ V+G G+ L Sbjct: 61 RAAGDTARGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ + ++ S+ +++R R + LK A + D + S IT + Sbjct: 121 AAGLAVTTGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA++ A+L GIGTV DDP+LT R E P+R+++D + L +K+++ Sbjct: 181 RRDGHRWRARACAVLTGIGTVREDDPQLTVRAVPC-ERQPLRVLVDARLDIPLSAKLLQG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295 +I T +D + A ++ DL L+ L RG+ + VE G Sbjct: 240 GG---CLIATAIEDCEKSAALAALGAEVVVLPNGRGKVDLPSLMRELGDRGINEVHVEAG 296 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 + S + VD ++LY + +++G+ L + + G D+ Sbjct: 297 LKLNGSLLRENCVDELLLYVAPMLVGDAAQGLFNLPELVQLDRAIRLQWRDVRFIGGDLR 356 Query: 352 L 352 + Sbjct: 357 V 357 >gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003] gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003] Length = 384 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 126/367 (34%), Positives = 187/367 (50%), Gaps = 23/367 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL +R + T NP V C+IV++G VIG G T G HAE++A+++ Sbjct: 2 FSQTDFVHMERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATAYVTLEPCSH+GR+PPCA +IE + RVV ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDLRGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K+A S D G+ S ITG Sbjct: 122 RDAGIEVRCGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP +T R P R+++D ++ ++I+ Sbjct: 182 ARADGHAWRARASAILTGIGTVREDDPRMTVRAVE-TPRQPQRVLIDSQLEVPPQAQIL- 239 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP +I N D A A R + I+ DL +L L R V L Sbjct: 240 --AGAPTLIFCGNLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSP-LEEGYLEKNFMCVRRDY 345 VE G + S + VD +++Y + ++G + +P EG ++ F V R Sbjct: 298 VEAGYKLNGSLLREGCVDELLVYLAPSLLGIDSMSMFNLSAPETLEGRVKLAFHNVER-- 355 Query: 346 FGSDVCL 352 G D+ + Sbjct: 356 IGDDLRI 362 >gi|319784162|ref|YP_004143638.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317170050|gb|ADV13588.1| riboflavin biosynthesis protein RibD [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 371 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 163/365 (44%), Positives = 226/365 (61%), Gaps = 10/365 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 ++ D RFM+AALR SR + G T+TNPSV LIV+D +++G GVTA GG PHAE + Sbjct: 6 QAALDRRFMAAALRLSRKNAGRTATNPSVGTLIVRDDGNGPMIVGTGVTAVGGRPHAETE 65 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAG+ ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV DPD RVSG+G Sbjct: 66 ALAEAGDLARGATAYVTLEPCAHHGRTPPCANALVNAGVARVVGAASDPDSRVSGKGYAI 125 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ +V++++ +E + YL R + KR + LK+A+S D IG G G V ITG Sbjct: 126 LRAAGVEVVEKVLAAEAAEQMAGYLIRSLRKRPEVILKLALSSDGKIGREGDGQVSITGD 185 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 I++ +V+L+RA++DAILVGIGT L DDP LT RL GL+ SP RI+LD +L SK++ Sbjct: 186 IARREVYLMRAEADAILVGIGTALEDDPALTVRLPGLENRSPARIVLDRQIRLPEASKLV 245 Query: 238 KTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 P+ I DP+ A + + I + + L +LL L G+ S+LV Sbjct: 246 SGVDRVPLYIAACLEADPLRRAALERAGVRFIGTETHEGGVALPELLEDLAALGMASVLV 305 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGGA VA +F+ LVD I+L++ IG+ GI SP++ ++ F +R FG D Sbjct: 306 EGGARVASAFLADGLVDRIVLFQGPDAIGDDGIASPVDADHIPAGFRKLRDMRFGEDSYA 365 Query: 353 EYIGK 357 E+I Sbjct: 366 EWIRD 370 >gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113] gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113] Length = 371 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 180/331 (54%), Gaps = 14/331 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ ++ + T NP V C++V+ G ++G G G HAE+ AL +AG Sbjct: 3 DRAYMVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQAGIR 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G+T YVTLEPC H GR+PPC + +IE G+ RVV + DP +V+ +GL L + G+ + Sbjct: 63 AQGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ E + ++ R V+ R + K+A+S D +A S IT ++ V Sbjct: 123 EHGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKLSLDSKIIK 238 RA+S AIL GIGTVL DDP L R L + P+R+ILD +S+ ++++ Sbjct: 183 WRARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLL- 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 +L PV+IV + A + R + + +I DL L+ L R + L VE Sbjct: 242 -SLPGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVEC 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 GA +A S + + L+D ++LY + ++GE + Sbjct: 301 GARLAGSLLQAGLMDELVLYIAPKLMGEAAL 331 >gi|163747444|ref|ZP_02154796.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex HEL-45] gi|161379297|gb|EDQ03714.1| riboflavin biosynthesis protein ribD [Oceanibulbus indolifex HEL-45] Length = 370 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 136/361 (37%), Positives = 189/361 (52%), Gaps = 11/361 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DARFM+ AL R G NP+V C+IV+ +IGRG T GG PHAE QAL +AGE Sbjct: 8 DARFMALALSLGRRGQGNVWPNPAVGCVIVQGTRIIGRGWTHPGGRPHAEPQALAQAGEA 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+G++PPCAQ +I G+ RVV+ D D RV+GRG+ L GI + Sbjct: 68 ARGATVYVTLEPCSHHGKTPPCAQALINAGVARVVIATQDDDARVNGRGIAMLRAAGIDV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 E+E + + R R +TLK+A S D I S IT ++ H Sbjct: 128 SVGEREAEARADHAGFFCRTDLGRPMLTLKLANSFDGRIATGTGESQWITDAPARRLTHA 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GT DDP LT R G+ H P R+++ L L ++ +TA P+ Sbjct: 188 MRARHDAVMVGAGTARKDDPSLTVRDLGV-AHQPARVVVSRRLDLPLMGQLARTAADIPL 246 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+ + DP L + ++ C R D +L L G G+T + EGG+A+A Sbjct: 247 ILCHGTDADPALVRTWSDLGATLLLCAARGAQLDPTDVLRQLAGHGLTRIFCEGGSALAA 306 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 S I + LVD ++ + + +VIG G+P L F G D+ + Sbjct: 307 SLIEADLVDRLVGFTAGLVIGAEGLPGIGALGLSRLAEAPRFALQSSQRIGPDLLHVWRR 366 Query: 357 K 357 Sbjct: 367 N 367 >gi|325124197|gb|ADY83720.1| bifunctional protein ribD [Acinetobacter calcoaceticus PHEA-2] Length = 361 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGIPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R + P R++LD +L L++K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + +LVE Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ LVD +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|71892014|ref|YP_277744.1| pyrimidine deaminase/reductase [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796120|gb|AAZ40871.1| pyrimidine deaminase/reductase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 379 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 180/373 (48%), Gaps = 22/373 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RF++ AL+ + T NP+V C+IV++ +IG G G HAE+ AL AG Sbjct: 9 DKRFLTRALQLAWKGRFTTMPNPNVGCVIVRNNKIIGEGYHIRAGEAHAEIHALRIAGNL 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAY+TLEPCSHYGR+PPC +I GI+RVVV + DP GRGL L Q GI + Sbjct: 69 AQGATAYITLEPCSHYGRTPPCTTALINAGIKRVVVAMLDPHFYARGRGLHLLQQAGIEV 128 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M E + +L R + LK+A S D M+ S IT ++ V Sbjct: 129 QHSLMLPEAESINRGFLKRIRTGFPWVKLKLAASLDGRTAMSSGESKWITSIQARQDVPR 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+SD IL GTVLADDP+L R + P+R+I+D ++ Sbjct: 189 FRAESDVILSTAGTVLADDPKLNVRWECFSDEMKRIYANNQIRQPLRVIIDSANRVLPTH 248 Query: 235 KIIKTALLAPVIIVTENDD----PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 ++I+ +++V D P +IN +L +L+ L R + ++ Sbjct: 249 RVIR--YEGKILLVRLKKDHRNWPSSVEQLLLSSINCHGHHRINLTELMQHLGYREINNI 306 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYF 346 VE GA + ++ LVD +ILY++ +G P L K+F + Sbjct: 307 WVEAGATFSGVLLDIGLVDELILYQAIKFLGSDARPLCLLPNIKCLNDIKSFKLLDIKNI 366 Query: 347 GSDVCLEYIGKNL 359 G D+ L I K + Sbjct: 367 GPDLRLRLIPKGM 379 >gi|262280656|ref|ZP_06058439.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202] gi|262257556|gb|EEY76291.1| pyrimidine deaminase [Acinetobacter calcoaceticus RUH2202] Length = 361 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 188/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKKDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E + +L ++ LK+A S D MA S ITG ++ Sbjct: 121 NAGIEVEVGICEDLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R G + P RIILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRTLGSVDIETIAQPKRIILDRQGRLPLAAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +LVE Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLETQPLKVLLQTLSKQYQIYDVLVEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ LVD +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTLLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 23270] gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 23270] Length = 366 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 188/365 (51%), Gaps = 12/365 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D FMS AL + + NP V ++VKDG VIGRG G PHAEV AL+EA Sbjct: 3 TEQDLAFMSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ARGATAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G Sbjct: 63 GAAARGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAG 122 Query: 124 IIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 ++ + E+ + +L R R + LK A+S D + +A S +TG ++ Sbjct: 123 VVAEEGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V RA++ AILVGIGTVLAD+P L RL P+++I+D H + D+ + T Sbjct: 183 VQQERARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGA 242 Query: 243 APVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 V I D PV A A + D ++++ +L R + +LVE G Sbjct: 243 --VWIFHGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPG 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 VA S + L+D +LY + +++G P P + + ++ G+D+ Sbjct: 301 VAASLFAAGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWT 360 Query: 354 YIGKN 358 + Sbjct: 361 LRPQE 365 >gi|116748817|ref|YP_845504.1| riboflavin biosynthesis protein RibD [Syntrophobacter fumaroxidans MPOB] gi|116697881|gb|ABK17069.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Syntrophobacter fumaroxidans MPOB] Length = 363 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 186/355 (52%), Gaps = 14/355 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M ALR + G TS NP V ++V+ + G + G PHAEV AL +AG++ARGA Sbjct: 1 MKRALRLAAKGAGRTSPNPMVGAVVVRGETTVAEGFHEFVGGPHAEVNALRQAGDKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+H GR+PPC + +++ G+ VV+ ++DP+ V G G +L G+ + + Sbjct: 61 TLYVTLEPCNHQGRTPPCTRAVLDSGVATVVIGMEDPNPGVRGGGASFLRSHGLRVHAGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + ++ ++TLK AV+ D I + S I+ S+ H LR Sbjct: 121 LEKECRALNQPFIKHVTTGLPYVTLKAAVTLDGAIASSSGDSKWISNERSRKFAHHLRCI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 SD +L+GIGT LADDP L+ R+ P+RI+LD +L L+S +++TA P+++V Sbjct: 181 SDGVLIGIGTALADDPLLSARIKRRPACRQPVRIVLDSRLRLPLESALVRTAAEFPLMVV 240 Query: 249 TENDD-PVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D P A ++ L +LL L +G+ SLLVEGGA V +F+ Sbjct: 241 CGRDAPPTREKALVDAGAEVMRLSSGKGGIHLPELLRALGSKGLCSLLVEGGATVLGAFL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSDVCL 352 ++ L D + + V+G+ +P+ G + VR FG DV L Sbjct: 301 DNGLADDFHFFYAPKVLGDP-AGTPMVRGRGRERMADAVPVFDVRVRRFGEDVML 354 >gi|184156566|ref|YP_001844905.1| pyrimidine deaminase [Acinetobacter baumannii ACICU] gi|332874950|ref|ZP_08442801.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6014059] gi|183208160|gb|ACC55558.1| Pyrimidine deaminase [Acinetobacter baumannii ACICU] gi|322506453|gb|ADX01907.1| ribD [Acinetobacter baumannii 1656-2] gi|323516332|gb|ADX90713.1| pyrimidine deaminase [Acinetobacter baumannii TCDC-AB0715] gi|332736893|gb|EGJ67869.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii 6014059] Length = 361 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +L+E Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ L+D +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|260889069|ref|ZP_05900332.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254] gi|260861129|gb|EEX75629.1| riboflavin biosynthesis protein RibD [Leptotrichia hofstadii F0254] Length = 371 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 112/369 (30%), Positives = 196/369 (53%), Gaps = 18/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M A+ ++ G + NP V ++V+ G VIG G Y G PHAEV AL+EA Sbjct: 4 NIDEKYMRMAIELAKKGAGPVNPNPMVGAVVVQGGKVIGTGYHKYFGEPHAEVYALDEAS 63 Query: 65 EEAR---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + ++ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L Sbjct: 64 KNSKDLSDATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGIQILKN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +++ E + + K ++ LK A++ D I S IT ++ Sbjct: 124 AGIEVTENILKEECDKINQVFFKYIMTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + I+VGI TVLAD+P LT R+ +P RII+DPH K D +IK Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIE--NGINPYRIIIDPHLKTEKDYTVIKEN 241 Query: 241 LLAPVIIVTENDDPVLALAF---RKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGG 295 + II+T ++ F + ++ + K++L + G+ S+L+EGG Sbjct: 242 IDEKTIIITSEENKNSEKQFDFSENSKVKFVFLNGTKFSFKEILEKIGMLGIDSILLEGG 301 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSD 349 ++ ++D+ ++ + ++G+ S + G+ +KN ++ + +G + Sbjct: 302 QSLISQAFEEDVIDAGEIFIANKILGDTEGKSFIA-GFDKKNMNEAIVLKNIKYNVYGEN 360 Query: 350 VCLEYIGKN 358 V E++ K+ Sbjct: 361 VGTEFLQKS 369 >gi|86137887|ref|ZP_01056463.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193] gi|85825479|gb|EAQ45678.1| riboflavin biosynthesis protein RibD [Roseobacter sp. MED193] Length = 357 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 132/356 (37%), Positives = 193/356 (54%), Gaps = 11/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C++V++G ++GRG T GG PHAEV AL +AG+ ARGA Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVLVREGRIVGRGWTQPGGRPHAEVAALAQAGKLARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TA+VTLEPCSH+G++PPCAQ +I+ GI R+V V D D RVSG+G + L Q GI + + Sbjct: 61 TAFVTLEPCSHHGKTPPCAQALIDAGIARLVAAVGDSDPRVSGQGFEMLRQAGIEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + + R +TLK+A S D I S ITG ++ VH +RA+ Sbjct: 121 LSEEAARDHAGFFYKTEQGRPFVTLKMASSFDGRIATGTGQSKWITGPEARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT ADDP LT R G+ H P+R+++ H L L S++ +A P+ + Sbjct: 181 HDAVVVGAGTARADDPSLTVRDLGV-AHQPVRVVISRHLDLPLISQLATSASKVPLWLCH 239 Query: 250 -ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + D A+ ++ C R D +L L G+T + EGG+A+A S + Sbjct: 240 GQGADVERKQAWEGLGARLLPCASRGVQLDPHDVLQQLGAAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 LVD +I + + + IG G+PS L F + G+DV + Sbjct: 300 FDLVDELIGFTAGLGIGAEGLPSIGALGLHRLEAANRFDLIETCPVGADVMHRWRR 355 >gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM 180] gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM 180] Length = 381 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 181/370 (48%), Gaps = 20/370 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M+ A+ + T NP V C++V+DG V+G G G PHAE AL +AGE Sbjct: 13 DDRLHMARAIGLAERGRYTTDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGE 72 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 AR AT YVTLEPCSH+GR+PPCA+ +I G+ RVV + DP+ RV+GRG++ L Q GI Sbjct: 73 RARDATVYVTLEPCSHHGRTPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGIS 132 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +ESE + ++ R + R ++ K+A S D +A S IT ++ V Sbjct: 133 VDVGCLESEARALNPGFVKRYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQ 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ---------EHSPMRIILDPHFKLSLDSK 235 RA S AI+ G+GTVL DDP L RL + P R+++D H++ ++ Sbjct: 193 RWRAGSSAIVTGLGTVLGDDPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTAR 252 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLL 291 ++ L +IV A A +I DL L+ L R V +L Sbjct: 253 LL--GLPGRTLIVGIGPRDTAAAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVL 310 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFG 347 +E G+ ++ + + + LVD I+LY++ ++G+ ++ + G Sbjct: 311 LEAGSTLSGAAVRAGLVDEILLYQAPCLMGQAAKGLFDLPGIDTMLDRVGLEILEVRSIG 370 Query: 348 SDVCLEYIGK 357 D+ + Sbjct: 371 RDLRIRARPD 380 >gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Psychromonas ingrahamii 37] gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychromonas ingrahamii 37] Length = 387 Score = 333 bits (854), Expect = 2e-89, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 182/373 (48%), Gaps = 23/373 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +M+ A+ ++ +S NP+V C+IV + I++G G G HAEV AL Sbjct: 6 FSDLDKYYMAHAILLAKKGRFTSSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAI 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A GAT YVTLEPCSH+GR+PPCA + + GI+RV++ + DP+ +V+G G++ L + Sbjct: 66 AKDKAMGATCYVTLEPCSHFGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++++E ++ R K +T+K+A S D + S ITG ++ Sbjct: 126 GIKVDLGLLKNEAMDLNRGFIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARC 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------------SPMRIILDPHF 228 V RA A+L G TV+AD+P L R L+ H P+RIILD H Sbjct: 186 DVQYFRALQSAVLTGSATVIADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHN 245 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILV 283 K++L K+ ++ + DD +I + +LK LLT L Sbjct: 246 KITLKEKLFSLEGKVLLVSLLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQLS 305 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFM 339 + L VE GA +A F N +LVD ILY++ ++G Y + Sbjct: 306 DYEINDLWVEAGATLAGEFFNHQLVDQFILYQAPKLMGSQARDLVNLPDYSKMIEVVQLS 365 Query: 340 CVRRDYFGSDVCL 352 G+D+ + Sbjct: 366 LQSVVLIGNDIRI 378 >gi|269839638|ref|YP_003324330.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC BAA-798] gi|269791368|gb|ACZ43508.1| riboflavin biosynthesis protein RibD [Thermobaculum terrenum ATCC BAA-798] Length = 364 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 187/364 (51%), Gaps = 15/364 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + +G T NP+V ++V+DG+VIG+G T G PHAEV AL EAGE ARGA Sbjct: 1 MRRALELAESALGRTWPNPAVGAVVVRDGLVIGKGATQPPGGPHAEVVALAEAGEAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 YVTLEPCSH+GR+PPC + II G+R V DP+ +V GRG+ L + GI V + Sbjct: 61 ILYVTLEPCSHWGRTPPCTEAIIRAGVREVHAATLDPNPKVHGRGVAQLREAGIEVHLGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E + R +TLK A++ D I S ITG ++ H LR + Sbjct: 121 CEREATRINEGFFKRVRTGLPFVTLKYAMTLDGRIATRTGSSKWITGEEARTCAHRLRDR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNG-----LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +DAI+VG+GTVLADDP LT RL H P+R+++D + + +++ Sbjct: 181 ADAIMVGVGTVLADDPLLTTRLPPELCGYGGPHHPLRVVVDSRGRTPARAAMLRRDTPGR 240 Query: 245 VIIVTENDDPV-LALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299 ++ P LA++ + D L+ LL L GV + LVEGG + Sbjct: 241 TLVACTTLAPEDRRLAWQDAGAEVAVFAPEDGRVPLEALLRYLGDTGVNTALVEGGGTLH 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 + ++ L D I+ + + +IG G P+P+ + + +DV + +G++L Sbjct: 301 GALLDVGLADKIVAFVAPKLIGGEGAPAPVGGRGVADMASALEL----ADVRVTQVGRDL 356 Query: 360 CLQE 363 ++ Sbjct: 357 LIEG 360 >gi|239502078|ref|ZP_04661388.1| pyrimidine deaminase [Acinetobacter baumannii AB900] Length = 361 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 REAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLHNVDIETVAQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +L+E Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ L+D +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|193076093|gb|ABO10696.2| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978] Length = 361 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 185/365 (50%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ DD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +LVE Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ LVD +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSTAFLQEGLVDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer str. BVAF] gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer str. BVAF] Length = 383 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 184/370 (49%), Gaps = 23/370 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++S A + +R T NP+V C+IVKD VIG G G HAE+ AL AG Sbjct: 7 PEDIGYLSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINALSVAG 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+GATAYVTLEPCSHYGR+PPC +I+ GI+RVVV + DP ++GRG+Q L Q GI Sbjct: 67 NFAKGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M SE + ++ R I LK+A S D + M+ S IT S+ V Sbjct: 127 LVSHSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRL------------NGLQEHSPMRIILDPHFKLS 231 RA+SD IL TVL D+P L R NG Q P+R+I+D ++ Sbjct: 187 QCFRAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIIDSTNRIL 246 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGR-G 286 + I+ +++ + D+ + + ++ I + +LKKL+ L Sbjct: 247 PTHRFIQNEGGV-ILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKLMQYLACYLK 305 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVR 342 + S+ VE G ++ + ++ LVD +ILY++ +G P L + K F + Sbjct: 306 INSVWVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKPLCLLPNLNKLSDIKTFKLID 365 Query: 343 RDYFGSDVCL 352 G D+ L Sbjct: 366 ITSIGPDIRL 375 >gi|260556402|ref|ZP_05828621.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC 19606] gi|260410457|gb|EEX03756.1| riboflavin biosynthesis protein RibD [Acinetobacter baumannii ATCC 19606] Length = 361 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R ++ P R+ILD +L L +K Sbjct: 181 RQDVQHWRAISGAVITGIDTVIADDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + + +L+E Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLIEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ L+D +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSSAFLQEGLIDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVIQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|126733197|ref|ZP_01748944.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2] gi|126716063|gb|EBA12927.1| riboflavin biosynthesis protein RibD [Roseobacter sp. CCS2] Length = 369 Score = 333 bits (854), Expect = 3e-89, Method: Composition-based stats. Identities = 127/355 (35%), Positives = 192/355 (54%), Gaps = 8/355 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DARFM+ AL R +G NP+V C+IV D ++GRG TA GG PHAE AL +AG Sbjct: 6 DARFMALALMLGRRGMGRVWPNPAVGCVIVNDCNIVGRGWTADGGRPHAEAIALAQAGSA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC+H+G++PPC+ +I+ + RVV+ DDPD RV+GRG+ L G+ + Sbjct: 66 ADGATVYVTLEPCAHHGKTPPCSNALIKANVARVVIAADDPDERVNGRGIAMLRDAGVQV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +L+R + R +TLK+A + D I A S ITG ++ VH+ Sbjct: 126 DCGVGNKAAARDHAGFLSRITQGRPFVTLKLAGTLDGRIATATGESQWITGPEARRMVHM 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA++VG GTV ADDP LT R G+ H P+R+++ K+ + S++ +TA PV Sbjct: 186 MRARHDAVMVGAGTVRADDPSLTVRGLGI-VHQPVRVVVSRALKIPVTSQLAQTARDTPV 244 Query: 246 IIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + + V + + D ++T L +G+T + EGG A S + Sbjct: 245 WLCHGPEADVAGWTAKGAVSLPCATAANQVDPHAIMTTLADQGITRVFCEGGGMFAASLL 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 N+ LVD ++++ + IG G P +++ F G D+C + Sbjct: 305 NAGLVDQLVVFSAGAAIGAEGTPMLAAMGVDQLIGAPRFALESVRPIGGDICHVW 359 >gi|194016088|ref|ZP_03054703.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] gi|194012443|gb|EDW22010.1| riboflavin biosynthesis protein RibD [Bacillus pumilus ATCC 7061] Length = 361 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 187/360 (51%), Gaps = 10/360 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V +IV+ G ++G G G PHAE+ AL AGE Sbjct: 3 DDVFYMKLAIANAKAMKGQTSPNPLVGAVIVQQGEIVGMGAHMKAGEPHAEIHALHMAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +A GA YVTLEPCSH+G++ PC + II+ G++RVV+ DP+ V+G+G+ L Q GI Sbjct: 63 KAEGAHLYVTLEPCSHHGKTGPCTEAIIKSGVKRVVIATQDPNPLVAGKGITVLKQAGIE 122 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 VD + + E + ++ LK A+S D I A S ITG ++ +V Sbjct: 123 VDEGICKQEADRLNVPFFHFIQSDLPYVILKSAISLDGKIATAQLESKWITGTEARQEVQ 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR ++DA++ G+ T++ DD L + + P+R+ILD ++ L +K + Sbjct: 183 QLRQEADAVITGVETIIQDDAGLIVKDSIAS--QPIRVILDSTLRIPLHAKCLTDRRAET 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +I + D +K ++ D+ +L +L R V S+LVE G V+ S Sbjct: 241 IICTSHMYDQKKYEQLIEKGHHVYVTSGEQRTDIHDVLRMLKERSVMSVLVEAGGNVSAS 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 F+ + LV+ ++Y + ++IG P+ E ++K +R +DV +GK++ + Sbjct: 301 FLEASLVNEAVIYMAPLLIGGKQAPTFFEGAGVKKLKEAIRP----ADVEYSMVGKDIKM 356 >gi|254500590|ref|ZP_05112741.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11] gi|222436661|gb|EEE43340.1| riboflavin biosynthesis protein RibD [Labrenzia alexandrii DFL-11] Length = 375 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 164/372 (44%), Positives = 221/372 (59%), Gaps = 16/372 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-----IVIGRGVTAYGGCPHAE 56 ++ D RFM+AA R +R +G NP+VA LIV++ +++GRGVT+ G HAE Sbjct: 3 SITETDNRFMAAAERLARRGLGRVWPNPAVAALIVQENSEGVPVLVGRGVTSRPGMAHAE 62 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V AL +AGE A+GAT YVTLEPCSHYGR+PPC+ +IE G+ RVVV + DP+ RVSGRG+ Sbjct: 63 VNALTQAGELAKGATCYVTLEPCSHYGRTPPCSLALIEAGVSRVVVGMMDPNPRVSGRGV 122 Query: 117 QWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI V + E K + RQ R + LK+AVS+D IG G G + I+ Sbjct: 123 GMLQDAGIELVTGVRERALKDLYRGFTYRQRRHRPSVFLKLAVSKDGFIGREGEGQIKIS 182 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G IS VH RA SDAILVGIGT LADDP+LTCRL GL SP+R+++D +L L SK Sbjct: 183 GPISMRMVHGFRAASDAILVGIGTALADDPQLTCRLPGLHARSPVRVVVDRQARLPLMSK 242 Query: 236 IIKTALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSL 290 +++T + PV +V N D A +NII D +L+ L RG+T L Sbjct: 243 LVRTCVDVPVWLVCGNAADADKVNALAAAGVNIIRVPATQTGIDPDVILSALATRGITRL 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYF 346 +VEGGA +A SF+N+ L+D + + + IGEGGIP+ L + F + Y Sbjct: 303 MVEGGARLASSFLNAGLIDDLCVVTGDMEIGEGGIPALHDLDLANVLTDPQFARIGAGYL 362 Query: 347 GSDVCLEYIGKN 358 G+D Y+ K+ Sbjct: 363 GAD-RYTYLRKS 373 >gi|78186602|ref|YP_374645.1| riboflavin biosynthesis protein RibD [Chlorobium luteolum DSM 273] gi|78166504|gb|ABB23602.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium luteolum DSM 273] Length = 366 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 184/362 (50%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ DA M+ + + G S NP V LIV DG VIG G G PHAEV A+ Sbjct: 2 LTEADACHMARCIELALQGAGSVSPNPMVGSLIVCDGSVIGEGYHMQCGGPHAEVNAIAA 61 Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + +T YV LEPCSH+GR+PPC+ IIE I RVVV DP+ +V+GRG+ L Sbjct: 62 VSDPSLLSRSTLYVNLEPCSHFGRTPPCSDLIIEKMIPRVVVGCRDPNPKVAGRGIMRLR 121 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ + + ++E+E A++T + R + LKIA + D I A S ITG + Sbjct: 122 DSGVDVYEGVLEAECLRLNEAFITSHTKGRPFVALKIAETLDGRIATADGASKWITGSEA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VH LR+ DA+L G TVL D +LT R ++ +P+R++LD ++ D+ + + Sbjct: 182 RREVHRLRSTYDAVLAGAATVLLDRAQLTVR--DVEGRNPLRVVLDSGLRVPFDAPVFSS 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 V A A KK I +++ DL ++L L R V SLLVE G Sbjct: 240 DAPTLVFAAGRMQGTTEASAAEKKGIEVVFVREVPGGLDLSQVLRELHRRDVLSLLVESG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVC 351 + ++ +F+ + L D ++++ + + G +PS +E + FG D+ Sbjct: 300 SRLSAAFVRAGLADKLLMFIAPKLFGADALPSFAPLAVEAPSGAVQLEFGQSKAFGRDIL 359 Query: 352 LE 353 LE Sbjct: 360 LE 361 >gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226] gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226] Length = 367 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 185/375 (49%), Gaps = 29/375 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRG+Q L Sbjct: 61 MRQAGELTHGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L + + +T +PV+ V + + A K DL++LL L Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGK---------LDLRELLAQLAQQHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 V L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 290 VHQLWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIED 349 Query: 343 RDYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 350 CRMVGADLRIIATPK 364 >gi|299771887|ref|YP_003733913.1| pyrimidine deaminase [Acinetobacter sp. DR1] gi|298701975|gb|ADI92540.1| pyrimidine deaminase [Acinetobacter sp. DR1] Length = 361 Score = 333 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 120/365 (32%), Positives = 187/365 (51%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 RQAAEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E+ + +L ++ LK+A S D MA S ITG ++ Sbjct: 121 NAGIEVEVGICENLAEKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGAVA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R G P R++LD +L L++K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLGHIDIETVAQPKRVVLDRQGRLPLNAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + +LVE Sbjct: 241 ILEN---PETVLVMGPYRQELA------DLGVIQLEIQPLKILLQTLSKQHQIYDVLVEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ LVD +I Y + +G+ + E + F + D+ Sbjct: 292 GATLSTAFLQEGLVDELISYIAPTFLGKSARAMFNAEFEYMAQQLRFTLLDVTQLDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|39935793|ref|NP_948069.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris CGA009] gi|39649646|emb|CAE28168.1| putative riboflavin-specific deaminase / reductase [Rhodopseudomonas palustris CGA009] Length = 389 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 153/362 (42%), Positives = 207/362 (57%), Gaps = 12/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRTAGI 144 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E ++ R ++R H+TLK+AVS D I AG V ITG + + Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRA+SDA+L+GIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A Sbjct: 205 HLLRARSDAVLIGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPAASKLLHSARTT 264 Query: 244 PVII-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ + +E + A +I+ DL +L L +GVT L VEGGA Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLFVEGGA 324 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA S + L D I L+RS IG GI + PL ++ + G+D Sbjct: 325 RVAASLVAGELADEIWLWRSDNAIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384 Query: 353 EY 354 Y Sbjct: 385 IY 386 >gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio vulnificus MO6-24/O] gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio vulnificus MO6-24/O] Length = 368 Score = 332 bits (852), Expect = 4e-89, Method: Composition-based stats. Identities = 115/367 (31%), Positives = 185/367 (50%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ Sbjct: 4 FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + Sbjct: 64 AGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 124 GIEVSVGLLQTEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQS AIL TVLAD+ L R + L P R++LD +L Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQLALPQEQLRQPTRVVLDRQAEL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289 S + K+ +T +I+ + D P + DL +L L + + Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPA----------PLDEHGQIDLPQLFAQLSQTQSINH 292 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L +E GA +A I +LVD +I+Y + ++G G L+ + Sbjct: 293 LWIEAGATLAAKLIKHQLVDELIVYLAPKLMGSDGRGLIGALGLQAMSHVIDLDIKDVRM 352 Query: 346 FGSDVCL 352 G D+ + Sbjct: 353 VGPDIRI 359 >gi|192291382|ref|YP_001991987.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris TIE-1] gi|192285131|gb|ACF01512.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris TIE-1] Length = 389 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 209/362 (57%), Gaps = 12/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D RFM AL R G T+ NP+V ++VKDG+++GRG T GG PHAEV+AL AG Sbjct: 25 SADRRFMQLALALGRRGQGRTAPNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAG 84 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + ARGAT YVTLEPCSH+GR+PPCA +I GI RVV ++DP+ V+G+G L GI Sbjct: 85 DAARGATLYVTLEPCSHHGRTPPCADAVIAAGIARVVSAIEDPNPLVAGQGHARLRAAGI 144 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E ++ R ++R H+TLK+AVS D I AG V ITG + + Sbjct: 145 AVEIGVCAEEAARDHAGHIRRIRDRRPHVTLKLAVSADGKIAAAGHKPVAITGEAANART 204 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A + Sbjct: 205 HLLRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRALRIPAASKLLHSARTS 264 Query: 244 PVII-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ + +E + A +I+ DL +L L +GVT LLVEGGA Sbjct: 265 PLWLMASEIAEAATAARLGAAGAEVIHVADCADTPGLDLPAVLHALADKGVTRLLVEGGA 324 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA S + L D I L+RS IG GI + PL ++ + G+D Sbjct: 325 RVAASLVTGELADEIWLWRSDNPIGADGIDALHDLPLTAMTDSPHWRVRTTERVGADTLT 384 Query: 353 EY 354 Y Sbjct: 385 IY 386 >gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5] gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5] Length = 373 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL+ Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKN 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARTRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|212212876|ref|YP_002303812.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii CbuG_Q212] gi|212011286|gb|ACJ18667.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii CbuG_Q212] Length = 354 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ I LD H +L L++ +I Sbjct: 179 QYTHEWRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + ++ D +KNI I + DL ++L ++ G+ L +E G Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353 SF+ L++ ++Y + ++G +P+ L +F V FG DV E Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351 >gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 366 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 126/356 (35%), Positives = 181/356 (50%), Gaps = 20/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV+DG ++G+G A G PHAEV AL EAGE ARGA Sbjct: 1 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH GR+PPCA +I G+ RVV + DP+ +V+G GL L GI + + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + ++ R R ++ +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPFFQA 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296 ++VT + + D DL++L+ L RGV +LVE G Sbjct: 241 GSA---LVVTCAAASARGRYQEDGHEMLALADSAGHVDLRRLMGELGARGVNEVLVEAGP 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 +A +F LVD L+ + +G P PL + + G+D Sbjct: 298 RLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 353 >gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria IOP40-10] gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria IOP40-10] Length = 373 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) [Aliivibrio salmonicida LFI1238] gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis protein RibD) [Aliivibrio salmonicida LFI1238] Length = 373 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 186/374 (49%), Gaps = 29/374 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D M A++ ++ + T+ NP+V C++VK+G+++G G G PHAEV AL Sbjct: 1 MKFTPQDHLMMQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A E A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+GRGL L Sbjct: 61 RQASENAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLE 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++E+E + ++LTR + + LK+A S D + S IT + Sbjct: 121 AAGIETASGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RAQ+ IL TV+ D+ L R + L P+R+ILD Sbjct: 181 RQDVQRYRAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILV 283 +L+ + + T +VT + P L+ + + +YCD + L ++ + Sbjct: 241 QLTSELALFNTTGN----VVTVSHQPSHPLSHPESH---LYCDLDNNKQLVLSDVIQKIA 293 Query: 284 -GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNF 338 V L VE GA +A S I LVD +I+Y + ++G G LE N Sbjct: 294 QEHNVNHLWVEAGATLAASMICEGLVDELIIYLAPKLMGADGRSIVNLIGLEAMSEAINL 353 Query: 339 MCVRRDYFGSDVCL 352 G D+ + Sbjct: 354 DISDIRMVGKDIRI 367 >gi|149174623|ref|ZP_01853249.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797] gi|148846733|gb|EDL61070.1| riboflavin biosynthesis protein RibD [Planctomyces maris DSM 8797] Length = 377 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 116/358 (32%), Positives = 184/358 (51%), Gaps = 18/358 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL +R G NP+V +IV +IG G G PHAE+ AL AGE+++G Sbjct: 14 MHRALELARRGTGSVEPNPAVGSIIVDHSLKLIGEGYHQQCGGPHAEIHALNMAGEQSQG 73 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPC H G++ PC+Q +I GI++VV+ + DP V G G++ L Q GI + Sbjct: 74 KTIYVTLEPCCHQGKTGPCSQALIRAGIKKVVIAMRDPAPHVDGGGIEELKQAGIEVEVG 133 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ESE + + ++ R + I K A++ D I S I+ S+ +VH LR Sbjct: 134 LLESEAQALVRPFVKRVTQGLPWIHAKWAMTLDGKIATRTGHSQWISNPRSRERVHELRG 193 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAI+VG T ADDP LT R G + P RI++D +LS+ S++++T APVI+V Sbjct: 194 RMDAIMVGQRTATADDPLLTARPPG--KRIPARIVIDSQARLSVQSQLVQTVAEAPVIVV 251 Query: 249 -TENDDPVLALAFRKKNINIIYCDC--------RDLKKLLTILVGRGVTSLLVEGGAAVA 299 + L + + ++ +L+ + L R +T++LVEGG ++ Sbjct: 252 AHPSASQKKILQLEQAGVEVLQFSNCTSENESQPNLRLCMQELARRDMTNILVEGGGSLL 311 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 S + RL+D + ++ + +IG +P+ LE N + SD+ + Sbjct: 312 GSCFDQRLIDEVHVFIAPKIIGGAEAVTPIAGKGLEMIPELHNLQDYQIQQLDSDIYV 369 >gi|303228926|ref|ZP_07315736.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-134-V-Col7a] gi|302516340|gb|EFL58272.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-134-V-Col7a] Length = 406 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 122/391 (31%), Positives = 181/391 (46%), Gaps = 41/391 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG+ Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGDN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI + Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + T + +T+K A+S D I S IT S+ H+ Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHI 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDPH 227 LRA DA+LVGIGT+LADDP L CRL N L+ H P IILD Sbjct: 184 LRASHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------------- 273 + D+K+ +I V + +A + + Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVEELPTKSVRQGRTTDVAIDI 303 Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG + + Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTAAVG 363 Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356 +++ +E Sbjct: 364 GTGFATLHEAPTLEFASSRILDNNIRIESYR 394 >gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145] gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145] Length = 373 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 113/360 (31%), Positives = 176/360 (48%), Gaps = 16/360 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R T NP+V C+IVKD ++G G G PHAEV AL +AG + Sbjct: 10 DHLYMHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAGTQ 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+ ATAYVTLEPCSH GR+PPC +I + RVV+ + DP+ VSGRG+ L I + Sbjct: 70 AKHATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADIEV 129 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E+ + ++ R + ++ +K+A S D ++ S ITG ++ V + Sbjct: 130 RVGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADVQV 189 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKII 237 RAQ+DAIL G TVL D+P L R P+R+I+D ++ D ++ Sbjct: 190 WRAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLRLF 249 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 + PV +V + P + I R DL L L R + + E GA Sbjct: 250 --EVETPVFVVRTTEAPASRHRHCHEIIAKADSQGRVDLHDALKELALREINLVWTECGA 307 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352 +A + N+++V+ ++ Y++ V+G L + +F + R G D+ + Sbjct: 308 QLAGALFNAQVVNELVYYQANKVLGSDARSMIALQELTQLDDALSFNVLERRMVGEDIRV 367 >gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65] gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65] Length = 370 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 192/369 (52%), Gaps = 22/369 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP S D FM+ A++ ++ + T NP V C++VK+G +IG G G HAEV AL Sbjct: 1 MP-SHID--FMARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNAL 57 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG A+GATAYVTLEPCSH+GR+PPC+ +I+ GIR +V + DP+ VSGRG + + Sbjct: 58 AQAGSAAQGATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMR 117 Query: 121 QKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++ESE K ++ R ++ +KIA S D MA S ITG + Sbjct: 118 AAGIEIISGVLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNA 177 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-----------EHSPMRIILDPHF 228 + V LRA+S AI+ GI ++LADD LT R + L E P+R+ILD H Sbjct: 178 RADVQRLRARSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHG 237 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ D K++ + V + P + + +L++LL L R Sbjct: 238 RIRPDHKVVNQSGQTLVCVRHGVQLPNFVESLALNHGE----SGLNLRELLKALADRQCN 293 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR---DY 345 +LVE G+ +A FI LVD ++ Y + ++G P + + + V+ + Sbjct: 294 EVLVETGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARPVFAMDIETMADKIPVQISDVRH 353 Query: 346 FGSDVCLEY 354 FG+D+ Y Sbjct: 354 FGNDIRFTY 362 >gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD] gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia ambifaria AMMD] Length = 373 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 112] gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1655] gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1655] gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] Length = 380 Score = 332 bits (851), Expect = 6e-89, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont] Length = 367 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 180/367 (49%), Gaps = 18/367 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M+ AL +R T+ NP+V C+IV+DG ++G G G PHAEV AL AG+ Sbjct: 3 DAHYMARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMAGDH 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + Sbjct: 63 ACGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M +E + +L R I LK+ S D MA S IT ++ V Sbjct: 123 SHGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 LRA+S AIL TVLAD+P LT R N L E P+R+++D +++ Sbjct: 183 LRARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQH 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 ++I A ++ D + + + DL ++ +L R + S+ VE Sbjct: 243 RLI--AQPGETWLMRTEADAQSWPSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSVWVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDV 350 GA +A + + + LVD +I+Y ++G LE G D+ Sbjct: 301 GAGLAGALLQAGLVDELIVYLVPKLLGNAARGLCALPGLETLADAPALNFSDVRQVGDDL 360 Query: 351 CLEYIGK 357 L + Sbjct: 361 RLILTPR 367 >gi|299135084|ref|ZP_07028275.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2] gi|298590061|gb|EFI50265.1| riboflavin biosynthesis protein RibD [Afipia sp. 1NLS2] Length = 377 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 150/365 (41%), Positives = 209/365 (57%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE AL+ Sbjct: 9 FTPEDHRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVILGRGWTQPGGRPHAEPVALQR 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+GAT YVTLEPCSH+G+SPPCA II GI RV+ ++DP+ V+G+G L Sbjct: 69 AGKAAKGATLYVTLEPCSHHGKSPPCADAIIAAGIARVMSAIEDPNPEVAGQGHARLRDA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E + R E+R H+TLK+AVS D I AG V ITG + Sbjct: 129 GIQVDVGLYRDEAARAHAGHFLRVREQRPHVTLKLAVSADGRIAAAGHKPVQITGEAANA 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VHLLRAQ+DAIL+GIGT +ADDP LTCRL G++ SP+R++LD +LS +S++I +A Sbjct: 189 RVHLLRAQNDAILIGIGTAMADDPMLTCRLPGMEACSPVRVVLDRALRLSGNSRLIHSAR 248 Query: 242 LAPVIIV---TENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 P+ ++ T L ++ + D DL+ +L L +G+T LLVEG Sbjct: 249 ATPLWLIASETAEAAAATKLGAAGAHVFHLAVDDHQVGLDLEAVLHTLSAQGITRLLVEG 308 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVC 351 GA VA SF+ + LVD L++ IG G+ + E + ++ + FG D Sbjct: 309 GAKVASSFLKAGLVDEFWLFQGMKNIGSDGLAALDGQQLETAIASGWLADETERFGDDRL 368 Query: 352 LEYIG 356 Y Sbjct: 369 TVYRR 373 >gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 23344] gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse 4] gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1] gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10229] gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10247] gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20] gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 10399] gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH] gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU] gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei 2002721280] gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 23344] gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1] gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10229] gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC 10247] gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH] gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU] gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei 2002721280] gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC 10399] gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse 4] gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20] Length = 380 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|29840652|ref|NP_829758.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC] gi|29835002|gb|AAP05636.1| riboflavin biosynthesis protein RibD [Chlamydophila caviae GPIC] Length = 368 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 8/351 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ NP V C+IVK+G +IG G G HAE A+ Sbjct: 4 FSEQQLFFMRRAIELGEKGRFSAPPNPWVGCVIVKNGQIIGEGYHEKRGQLHAEENAINS 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G+ YVTLEPC HYG +PPC +I+ + V V + DPD RV+G+G+ L + Sbjct: 64 TSVSVEGSEVYVTLEPCCHYGNTPPCVNLLIKHKVSTVYVALLDPDSRVAGKGVASLKEA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + + + E + L +Y+ ++ + +K A + D + S IT ++ Sbjct: 124 GIRVFEGLGKKEAEESLKSYIHQRTYGTPWVVIKSAATVDGQTADSHGKSQWITCPEARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA S AI+VG TVL D+P LT R L H P+R+++D + +KI + Sbjct: 184 DVGKLRASSQAIVVGSKTVLQDNPLLTAREPSGELYSHQPLRVVVDSLGNVGPQAKIFHS 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 + + + T + ++I+ + RD L KL++ L + + +LVEGG Sbjct: 244 HGKS-LYVTTTQCSKDHIKSIEDLGVDILVTEPRDSRVNLHKLMSYLATKQILQVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 + +F+ RL +++++Y + G+ P + GY ++ + +F Sbjct: 303 PVLHTAFLKERLANALVIYLGPKIFGDQRKPLFGDLGYQLQSAQKILPKFF 353 >gi|62185466|ref|YP_220251.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3] gi|62148533|emb|CAH64304.1| riboflavin biosynthesis protein RibD [Chlamydophila abortus S26/3] Length = 368 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 104/362 (28%), Positives = 178/362 (49%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ + NP V C+IVK+G +IG G G PHAE +A+ Sbjct: 4 FSEQQLFFMRRAIELGEKGAFSSQPNPWVGCVIVKNGRIIGEGYHEKAGQPHAEEKAIRS 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E G+ YVTLEPC HYG +PPC +I+ + V + + DPD RVSGRG L + Sbjct: 64 ASESIEGSEVYVTLEPCCHYGNTPPCVNLLIKYKVAAVYIALLDPDSRVSGRGAASLRKA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + + + E + L +Y+ ++ + + +K A + D + S IT ++ Sbjct: 124 GICVYEGLGKEEAERSLKSYIYQRTHGKPWVVIKSAATVDGQVADRDGQSQWITCPEARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TVL D+P LT R L P+R+++D + ++K+ + Sbjct: 184 DVGKLRARSQAIIVGSKTVLQDNPLLTARQPSGELYPCQPLRVVVDSKGVVPPEAKVFHS 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGG 295 A + + + T ++++ + +L +L+ L +LVEGG Sbjct: 244 AGKS-LYVTTPQSSEDHRKKIEDLGVDLLVTEPQGAKVNLHELMAYLSTTPTLQVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352 AA+ +F+ RLV +++LY ++G+ P+ + G + + + + + G+ + Sbjct: 303 AALHTAFLKERLVHALVLYLGPKILGDQRNPTFGDLGLRLHSSQKIVPIFSEIIGNSLKT 362 Query: 353 EY 354 + Sbjct: 363 SW 364 >gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Aminomonas paucivorans DSM 12260] gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Aminomonas paucivorans DSM 12260] Length = 378 Score = 332 bits (851), Expect = 7e-89, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 187/359 (52%), Gaps = 15/359 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + G S NP V C++V++G V+G G G PHAEV+AL AG A Sbjct: 19 QYFMHMALSLALRGTGFVSPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRAGTLA 78 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YV LEPCSH G++PPCA ++E + R VV + DP+ RV GRG+ L GI ++ Sbjct: 79 EGSTVYVNLEPCSHQGKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEVL 138 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + ++ E + ++ R R +TLK A+S D + S ITG +++++ HLL Sbjct: 139 ESVLPEEARWINRGFIRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHLL 198 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DAILVG+GTVL DDPELT R ++ P R++LD + +K++ + Sbjct: 199 RGEHDAILVGVGTVLLDDPELTVR--SVEGVCPRRVVLDGALRTPQTAKVLASGGCT--- 253 Query: 247 IVTENDDPVLA-LAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 TE D P A ++ I L +L L G+ +LLVEGGA VA Sbjct: 254 FFTEQDMPQGAGQRLEERGAEICRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARVAG 313 Query: 301 SFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 SF+ +LVD + L+ + ++G G G LE + R G D+ LE + Sbjct: 314 SFLREKLVDEVSLFLAPKLLGRGLQLGESWGLEHLDQGFDLRSCRIRQAGEDLWLEGVP 372 >gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501] gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501] Length = 359 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 177/353 (50%), Gaps = 17/353 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ +R + T NP V C+IV DG ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSHYGR+PPCA+ +++ G+ RVV + DP+ +V+G GL+ L GI + + Sbjct: 61 TAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVASGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + ++ R ++ K+A+S D MA S ITG ++ +V LRA+ Sbjct: 121 LEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVL D LT R L + P+R+++D ++ LD+ + Sbjct: 181 SSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPFFQ- 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 P ++VT ++ + DL LL L RG +LVE G + Sbjct: 240 --AGPALVVTVVAGCEETYRRAGHEALVLGQERVDLTSLLRELAARGANEVLVEAGPRLV 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 +F + L+D L+ + +G P PLE + V G D Sbjct: 298 SAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 350 >gi|254718884|ref|ZP_05180695.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] gi|265983870|ref|ZP_06096605.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] gi|264662462|gb|EEZ32723.1| riboflavin biosynthesis protein RibD [Brucella sp. 83/13] Length = 373 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 228/358 (63%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL EAGE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAEALVRSGVARVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R K + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILSEQAADDLAGYLNRSARKCPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL++ SP+R++LD +L SK++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLEQRSPVRVVLDGGLRLPPSSKLVRSADTQPL 254 Query: 246 IIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P A I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACGEEAPDERRAALSAAGCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD +I++RS +VIG G+ E ++ F +RR + D C EY+ Sbjct: 315 SFLDEKLVDRLIIFRSPLVIGAADGVAVEGLETHIASEFKILRRMRYADDACAEYVRN 372 >gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia sp. 383] gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp. 383] Length = 373 Score = 331 bits (850), Expect = 8e-89, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 181/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDIDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGYDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I + + A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAASELRANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGADAAGMFDLAAPANLDA---RTRLSFHGFE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RVGDDLRI 362 >gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri] Length = 372 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 188/369 (50%), Gaps = 20/369 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L+ Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLN 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++E++ + +LTR + + LK+A S D + S IT + Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RAQS AI TV+ D+ L R + L PMR ILD Sbjct: 181 RQDVQRYRAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGV 287 L+ D K+ + + I ++N P++ + + D +LK+++ + V Sbjct: 241 ALTSDLKLFQASGEVVTI-SSQNTHPIVTSENHIQCC--VDDDQLNLKEVVNKISRDFNV 297 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRR 343 + VE GA +A S I LVD +I+Y + ++G G LE + Sbjct: 298 NHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDI 357 Query: 344 DYFGSDVCL 352 G D+ + Sbjct: 358 RMVGKDIRI 366 >gi|85715452|ref|ZP_01046433.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A] gi|85697647|gb|EAQ35523.1| Riboflavin biosynthesis protein RibD [Nitrobacter sp. Nb-311A] Length = 383 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 203/364 (55%), Gaps = 12/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL R +G ++ NP+V +IVK+G+++GRG T GG PHAE +AL AG Sbjct: 19 AADLHFMQLALALGRRSLGASAPNPAVGAVIVKNGVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGKGHARLRAAGI 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E +L R + R HI LK+A+S D MI AG V ITG +K +V Sbjct: 139 SVEVGLCADEAAHHHAGHLRRVRDGRPHIILKLAMSSDGMIAAAGGIPVAITGEAAKARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ AILVGIGTVLADDP LTCRL G++ SP R++LD ++ S+++++A Sbjct: 199 HLLRAQCSAILVGIGTVLADDPMLTCRLPGMETRSPPRVVLDHALRIPESSRLVQSAHET 258 Query: 244 PVIIVTEN-DDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ I+T + A+ + ++ DL ++L L RGVT L+VEGGA Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGVQVMRVPVAAEAPGLDLLEVLRALSERGVTRLIVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 +A SF+ + LVD L IG+ G+ + PL F + D Sbjct: 319 RIAASFVAAALVDEAWLLSGPDPIGDDGVAALGALPLTAITGSPRFRMRACETLDQDALA 378 Query: 353 EYIG 356 Y Sbjct: 379 IYER 382 >gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 7894] gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei BCC215] gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] Length = 378 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|190572771|ref|YP_001970616.1| putative deaminase [Stenotrophomonas maltophilia K279a] gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a] Length = 361 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 122/356 (34%), Positives = 178/356 (50%), Gaps = 7/356 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D M+ ALR + T NP V C+I V+G+G G PHAEV AL Sbjct: 4 SFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L Sbjct: 64 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 124 AGIEVAEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G TVLADDP LT RL + P+R++LD + ++ Sbjct: 184 EDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRV--RE 241 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + + + A + DL +L +L RG+ + E GA +A Sbjct: 242 GGAPTLYMHDAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCL 352 + + +D ++LY++ ++G+ G P G ++ V + G D+ L Sbjct: 302 ALLRGGWMDELLLYQAPTLLGDNGRPLLAGLGINAMDQQRRLRVVDQRQVGEDIRL 357 >gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus bovienii SS-2004] gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Xenorhabdus bovienii SS-2004] Length = 369 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 175/368 (47%), Gaps = 18/368 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++MS AL + TS NP+V C+IV+ ++G G G PHAEV AL AG Sbjct: 2 TLDEKYMSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +A+GATAYVTLEPCSH+G++PPCA +I GI RVV + DP+ +V+GRGL L Q GI Sbjct: 62 GKAKGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ +E + +L R ++ LK+ S D +A S IT ++ V Sbjct: 122 AVEHGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RAQ AIL TVLADDP LT R + L P+RII+D +++ Sbjct: 182 QQFRAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTP 241 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + + + D + + DL L+ L R + S+ Sbjct: 242 QHQ--VVQQVGQCWLARTHTDQQQWPDNVDHIVLPAHGGGVDLVLLMMQLGKRQINSVWA 299 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGS 348 E G +A + ++ LVD +ILY + V+G L++ F GS Sbjct: 300 ECGPVLAGALLSLGLVDELILYIAPKVLGNTARGLFAIPELQKLSDAPEFTLFDVRQIGS 359 Query: 349 DVCLEYIG 356 DV L Sbjct: 360 DVRLRLRP 367 >gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium] Length = 350 Score = 331 bits (849), Expect = 9e-89, Method: Composition-based stats. Identities = 105/325 (32%), Positives = 171/325 (52%), Gaps = 17/325 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D+ +M+ AL+ + NP V C+IVKD +I +G G H E+ AL+ Sbjct: 4 TFSKNDSHYMAIALKLANEGRYGVGANPMVGCVIVKDDQIIAKGYHQTFGEAHGEINALK 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + +A GAT YVTLEPCSH G++PPCAQ II+ G ++V++ + DP+ VSG+G+ L Sbjct: 64 QIDHQAHGATFYVTLEPCSHQGKTPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLEN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ +ME++ ++ R +T KIA+S D M S ITG ++ Sbjct: 124 SGIEVITGLMENKALELNRGFVKRMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239 V LRA AI+ G GT++ D+P +T RLN + SP+R+++D ++ + I Sbjct: 184 QDVQKLRANHQAIITGSGTIITDNPSMTVRLNNINS-SPLRVVIDSKNQIQDTALNIFSN 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP +I+ N N+ ++ DL L L +G+ + L+E G + Sbjct: 243 D--APTLILNTN------------NVQVLESGKLDLNDALKHLGDQGINNALLEAGPGLI 288 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG 324 + + ++L+D I+Y + I++G Sbjct: 289 GAMLEAKLIDEFIIYTAPILMGSEA 313 >gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase, reductase [Burkholderia pseudomallei K96243] gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei DM98] gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14] gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9] gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei B7210] gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei NCTC 13177] gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 406e] gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase, reductase [Burkholderia pseudomallei K96243] gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 406e] gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] Length = 378 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 175/362 (48%), Gaps = 13/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLVFCGALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDV 350 G + S + R VD +++Y + ++G + + G D+ Sbjct: 301 GHKLNGSLLRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDL 360 Query: 351 CL 352 + Sbjct: 361 RI 362 >gi|260425443|ref|ZP_05779423.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45] gi|260423383|gb|EEX16633.1| riboflavin biosynthesis protein RibD [Citreicella sp. SE45] Length = 363 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 136/362 (37%), Positives = 197/362 (54%), Gaps = 11/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M+ ALR R +G NP+V C+IVKDG VIGRG TA GG PHAE QAL +AG Sbjct: 2 TQDIRHMAHALRLGRRRMGQCWPNPAVGCVIVKDGRVIGRGATAPGGRPHAEPQALAQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGAT YVTLEPC+H+G++PPCA+ +++ G+ RVV + D D RVSG+G + L + GI Sbjct: 62 VAARGATVYVTLEPCAHHGKTPPCAEALVKAGVARVVAPLADSDPRVSGKGFEHLRRHGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + + E R +TLK+A S D I A S ITG ++ V Sbjct: 122 EVTTGVLAEEAARDHAGFFLKVGEGRPLVTLKLANSFDGRIATATGESQWITGPEARRVV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LRA DA++VG GT +DDP LT R G + P+R+++ + L SK+ TA Sbjct: 182 HGLRAAHDAVMVGAGTARSDDPALTVRGWG-EVRQPVRVVVSRLIDVPLMSKLASTARQV 240 Query: 244 PVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 PV + +D P A++ +I C+ R D LL L +G+T + EGG + Sbjct: 241 PVWLAHGSDAAPATRKAWQSCGAKLIPCEIRAGRVDPHGLLRELGEQGLTRVFCEGGGQL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A S +++ LVD ++ + + + +G G P ++ F+ G DV + Sbjct: 301 AASLLSADLVDELVGFTAGLALGAEGRPGIGAMGVDRLSEAPRFVLDEVRAVGPDVMHRW 360 Query: 355 IG 356 Sbjct: 361 RR 362 >gi|269837993|ref|YP_003320221.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus DSM 20745] gi|269787256|gb|ACZ39399.1| riboflavin biosynthesis protein RibD [Sphaerobacter thermophilus DSM 20745] Length = 387 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 183/367 (49%), Gaps = 16/367 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V + D +M AL + G + NP+V ++V+DG ++G G T HAE+ AL + Sbjct: 9 VPATDLHWMRRALDLAASARGRVAPNPAVGAVLVRDGRLVGEGATEPPPGAHAEIVALRQ 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT YVTLEPC+HYGR+PPC +I GI R VV + DP V+GRGL+ L++ Sbjct: 69 AGALARGATLYVTLEPCAHYGRTPPCVDALIAAGIARAVVALRDPYPAVNGRGLRLLAEA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + + +L R +T K AVS D I + ITG ++ Sbjct: 129 GVRVELGLAAGAAAAINAGFLKRVHCGLPEVTAKFAVSLDGKIATHTGHARWITGAEARR 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN-----GLQEHSPMRIILDPHFKLSLDSKI 236 + H LR DAI+VGIGT+LADDP LT RL H P+R+++D + + + Sbjct: 189 EGHRLRDTHDAIMVGIGTLLADDPLLTTRLPPEDCGAGGPHHPLRVVVDSQARTPPGAAM 248 Query: 237 IKTALLAPVIIVTENDD-PVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 ++ + ++ T + P A R +++ DL LL L RGV S+L Sbjct: 249 LQPHMPGRTLLATTSSAPPERIAALRAVGADVVTLPDHGGRVDLHALLRCLAARGVNSVL 308 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346 VEGG + + ++ L+D + + + +++G P PL + V Sbjct: 309 VEGGGTLLGALFDAGLIDRAVAFIAPVMVGGRDAPGPLGGEGVATMDAACRLREVEVCQV 368 Query: 347 GSDVCLE 353 GSD+ ++ Sbjct: 369 GSDLMVQ 375 >gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 2192] gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa 2192] Length = 373 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+S +L G T+LADD L R + L +R+++D ++ Sbjct: 181 AVQRLRARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [marine gamma proteobacterium HTCC2207] gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium HTCC2207] Length = 373 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 179/371 (48%), Gaps = 15/371 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D +MS AL + TS NPSV C++V DG ++G G T G HAEV+AL Sbjct: 1 MAYSVDDREYMSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A+GATAYVTLEPCSH G++ PC + +I+ GI RVV+ +DP+ +V+G G++ L Sbjct: 61 NA-AASAKGATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQ 119 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E + + ++ R + + +K+A S D MA S IT S Sbjct: 120 DAGIEVACGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPAS 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHSPMRIILDPHFKLSLD 233 + V LRA + AI+ GIGT L DDP LT R+ P+R+++D ++S + Sbjct: 180 RKDVQRLRAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPE 239 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTS 289 +++ + + + AL +++ R DL +LL L R S Sbjct: 240 ARMFAQPGDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNS 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYF 346 ++VE GA +A F+ L+D ++ Y + + G P P++ Sbjct: 300 VMVEAGAGLAGGFVAEGLLDELVCYWAPKLFGSDARPMFELPIQTIDAHLALAVKDMRQI 359 Query: 347 GSDVCLEYIGK 357 G D+ + Sbjct: 360 GEDIRITLRPD 370 >gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia MC0-3] gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia MC0-3] Length = 373 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + R VD +++Y + ++G P+ LE + Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MC40-6] gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MC40-6] Length = 373 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 182/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALTLAARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K A S D + S ITG Sbjct: 122 RDSGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDA---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|84502762|ref|ZP_01000881.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis HTCC2597] gi|84389157|gb|EAQ01955.1| riboflavin biosynthesis protein RibD [Oceanicola batsensis HTCC2597] Length = 367 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 140/363 (38%), Positives = 194/363 (53%), Gaps = 11/363 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D RF+S AL R +G T NPSV C+IV+DG ++GRG TA GG PHAE QAL +A Sbjct: 3 AAADRRFLSLALALGRRGLGRTWPNPSVGCVIVRDGRIVGRGWTAPGGRPHAEPQALAQA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGATAYV+LEPC+H+G++PPC + +I GI RVV + D D RV+G+G + L G Sbjct: 63 GEAARGATAYVSLEPCAHHGKTPPCTEALIAAGIARVVAPLADTDPRVAGQGFERLRWAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ E + R R +TLK+A S D I A S ITG ++ Sbjct: 123 IEVSTGLLGEEAARDHAGFFLRNELGRPLVTLKLASSFDGRIATATGDSRWITGAEARRA 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH +R + DA++VG GT ADDP LT R G P+RI++ L L S++ +TA Sbjct: 183 VHAMRMRHDAVMVGAGTARADDPSLTVRDMGAT-RQPVRIVVSRRLDLPLMSRLARTAKE 241 Query: 243 APVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAA 297 PV + D DP L + + CD D + +L L G+T + EGG A Sbjct: 242 VPVWLCHGPDADPALHRTWADLGARLFACDVAGGHLDPRSVLGALGEAGLTRVFCEGGGA 301 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A S +N+ LVD++I + + IG G P+ L F G DV Sbjct: 302 LAASLLNADLVDTLIGMTAGVAIGAEGQPALGALGLARLAEAPRFDLAEARPLGGDVMHV 361 Query: 354 YIG 356 + Sbjct: 362 WER 364 >gi|148255996|ref|YP_001240581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bradyrhizobium sp. BTAi1] gi|146408169|gb|ABQ36675.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bradyrhizobium sp. BTAi1] Length = 383 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 144/366 (39%), Positives = 205/366 (56%), Gaps = 12/366 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D RFM AL R G T NP+V ++VKDG+++GRG T GG PHAE +AL Sbjct: 17 QKDADRRFMQLALALGRRGQGRTWPNPAVGAVVVKDGVIVGRGWTQPGGRPHAEPEALRR 76 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +GAT YV+LEPCSH+G+SPPCA +I GI RVV ++DP+ VSG+G L Sbjct: 77 AGAATKGATLYVSLEPCSHFGKSPPCADAVIAAGISRVVSAIEDPNPEVSGQGHARLRAA 136 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ++ K + R + R H+ LK+AVS D+ I AG V ITG ++ Sbjct: 137 GIQVEVGLCSADAKRDHAGFFRRIRDSRPHVILKLAVSADDKIAAAGNKPVAITGEAART 196 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VHLLRAQSDAIL+G+ T +ADDP LTCRL G++ SP+R++LDP +L + S+++++A Sbjct: 197 RVHLLRAQSDAILIGVRTAIADDPLLTCRLPGMEARSPVRVVLDPMLRLPMTSRLVQSAR 256 Query: 242 LAPVI-IVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEG 294 P+ I + +P A +I + + +L L +G+T L++EG Sbjct: 257 TTPLWMIASAVAEPAAATKLGAAGAQVIRVPPQVEPSVLEPPAVLKALADKGITRLMIEG 316 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 G+ VA SF+ S LVD I L R IG GI + PL + + +D+ Sbjct: 317 GSRVASSFMQSGLVDEIWLLRGAGEIGADGIAALDALPLTAITQSPAYRVRASETLDTDI 376 Query: 351 CLEYIG 356 Y Sbjct: 377 LTIYER 382 >gi|293610032|ref|ZP_06692333.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024] gi|292827264|gb|EFF85628.1| hypothetical protein HMPREF0013_02182 [Acinetobacter sp. SH024] Length = 361 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 186/365 (50%), Gaps = 18/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD +IG+G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDDQLIGQGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE A+GATAYVTLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L Sbjct: 61 REAGEHAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + E +L ++ LK+A S D MA S ITG + Sbjct: 121 NAGIEVEVGICEDLASKLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSK 235 + V RA S A++ GI TV+ADD +L R + P R++LD +L L++K Sbjct: 181 RQDVQHWRAISGAVITGIETVIADDCQLNVRSLNNFDIETVAQPKRVVLDRQGRLPLNAK 240 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294 I++ ++V LA ++ +I + + LK LL L + +LVE Sbjct: 241 ILEN---PETVMVMGPYRQELA------DLGVIQLEIQPLKMLLQTLSKQHQIYDVLVEA 291 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA ++ +F+ LVD +I Y + ++G+ + E + F + D+ Sbjct: 292 GATLSTAFLQEGLVDELISYIASTLLGKSARAMFNAEFEYMAEQLRFTLLDVTQIDQDIR 351 Query: 352 LEYIG 356 L I Sbjct: 352 LRLIP 356 >gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia cenocepacia J2315] gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Burkholderia cenocepacia J2315] Length = 373 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 181/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D V A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + R VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDA---RTRLSFHGIE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sediminis HAW-EB3] gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella sediminis HAW-EB3] Length = 374 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 187/370 (50%), Gaps = 23/370 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D MS A++ +R + T NP V ++ K G VIG G G PHAEV AL Sbjct: 2 WSVEDIEMMSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAM 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + A+GATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVVV ++DP+ +VSGRG++ L+ Sbjct: 62 ASDNAKGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E ++ R IT+K+A S D + S ITG ++ Sbjct: 122 GIQVDVGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRA+ A++ GI TVL DDP L R + L + H P+R+ILD +L+ Sbjct: 182 DVQRLRARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLT 241 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRG 286 K+ +P+++V+ D P+ ++++ + D L L L Sbjct: 242 KGFKLFSVN--SPILLVSCTDYPLEEQTAWPEHVSHLKLPADDCGRVVLSLLFKHLGQ-S 298 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLE-KNFMCVR 342 S+L+E GA +A S I D ++LY++ ++G G I P E + + Sbjct: 299 CNSVLIEAGATLAGSVIEQGHGDELVLYQAMKILGSAGRNLISLPGYEAMADIPAVELID 358 Query: 343 RDYFGSDVCL 352 G D L Sbjct: 359 ERKLGKDTRL 368 >gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU 1054] gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia HI2424] gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia cenocepacia AU 1054] gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia cenocepacia HI2424] Length = 373 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + R VD +++Y + ++G P+ LE + Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RVGDDLRI 362 >gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis 11-1] gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis 11-1] Length = 365 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 180/357 (50%), Gaps = 8/357 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +FD M+ AL+ + + NP V C++ KDG V+G G G PHAEV AL Sbjct: 4 TFDAFDHACMARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G+ RVV + DP RV G G L Sbjct: 64 EAGERARGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQA 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + +ME + + +L+R R + +K+A S D MA S ITG ++ Sbjct: 124 AGIAVAAGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-PMRIILDPHFKLSLDSKIIKT 239 V RA+S AIL G TVLADDP LT RL P+R++LD + ++ Sbjct: 184 ADVQRWRARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLRSLAMPRVRDG 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + AP + + D + + DL+ L +L GR + + VE G A+ Sbjct: 244 S--APTLYLHGPDAVPPPGLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALC 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352 + +++ LVD ++LY++ +V+G+ P G V G D L Sbjct: 302 GALLHAGLVDELLLYQAPLVLGDTARPLFAGLGIEAMAQRLRLELVEAAMVGDDRRL 358 >gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184] gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184] Length = 373 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 180/368 (48%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARSRGYDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ +E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P RI++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRILVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A + + I+ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGELRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + VD +++Y + ++G P+ LE + Sbjct: 298 VEAGHKLNGSLLREHCVDELLVYLAPSLLGADAAGMFDLAAPASLEA---RTRLSFHGIE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RVGDDLRI 362 >gi|303231427|ref|ZP_07318158.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-049-V-Sch6] gi|302513864|gb|EFL55875.1| riboflavin biosynthesis protein RibD [Veillonella atypica ACS-049-V-Sch6] Length = 406 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 123/391 (31%), Positives = 180/391 (46%), Gaps = 41/391 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++VK+ ++G G G HAEV AL+ AG Sbjct: 4 DELYMKRAISLAKMATGHTSPNPLVGAVVVKNNTIVGEGYHHKAGEAHAEVHALDAAGYN 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPC+HYG++PPCA+ ++E GI RVV+ DP+ V+G+G+Q L++ GI + Sbjct: 64 ARGATLYVTLEPCAHYGKTPPCAKRVVESGIARVVIGSTDPNPLVAGKGIQILTEAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + T + +T+K A+S D I S IT S+ H+ Sbjct: 124 TTDVCVDECIQLNEHFFTFIQTHKPFVTIKSAMSLDGKIATFTGQSQWITNESSRKDGHV 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL------------------NGLQEHSPMRIILDPH 227 LRA DA+LVGIGT+LADDP L CRL N L+ H P IILD Sbjct: 184 LRATHDAMLVGIGTILADDPLLNCRLTRDELYEALINRHDVSIDNTLEVHQPDIIILDSQ 243 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------------- 273 + D+K+ +I V + +A + + Sbjct: 244 GRTPTDAKVFTIPNRKVIIYVAKGCPEQRRIALANVGAIVKELPTKSVRQGRTTDVAIDI 303 Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 D++ L L + TS+LVEGG+ + SF+ S D I+ Y +VIG S + Sbjct: 304 KKIDIQACLEHLGEQEYTSVLVEGGSTIISSFVESLAFDKIVTYIGNLVIGGANSTSAVG 363 Query: 331 EGYL-----EKNFMCVRRDYFGSDVCLEYIG 356 +++ +E Sbjct: 364 GTGFATLHEAPTLEFDSSRILDNNIRIESYR 394 >gi|148654182|ref|YP_001281275.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. PRwf-1] gi|148573266|gb|ABQ95325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter sp. PRwf-1] Length = 368 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 123/364 (33%), Positives = 180/364 (49%), Gaps = 36/364 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P D +M+ A+ ++ + T NP+V C+IV + +++G G G PHAEV AL Sbjct: 25 PPKKQDIYYMNLAIEEAKKGLFTTRPNPAVGCVIVNNNLIVGTGYHPQAGQPHAEVFALR 84 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EA + A+GATAYVTLEPCSH GR+PPCAQ +I G+ RVVV DP+ +V+GRG+ L Sbjct: 85 EAKDNAKGATAYVTLEPCSHTGRTPPCAQALINSGVSRVVVAGLDPNPKVAGRGIAMLKA 144 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + + + +L + ++ LKIA S D MA S ITG ++ Sbjct: 145 AGIEVTVGVSTQQAEQLNLGFLKAMRTQMPYVRLKIASSLDGRTAMASGESKWITGPAAR 204 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDS 234 V LRA S AI+ G T++ D+P L R + L + P ++LD +L Sbjct: 205 EDVQKLRALSGAIITGSQTIIDDNPSLNVRSSQLGVALDKVPQPKIVVLDRRQRLDQAHY 264 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293 K+ + P L DL LL LV V +LVE Sbjct: 265 KVF--------------ESPDTLLWAE-----------HDLTALLHQLVTQYQVQDVLVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350 G+ V+ SFI + LVD +I+Y++ ++G P ++ +L+ F V GSD+ Sbjct: 300 AGSQVSGSFIEAGLVDELIVYQAPCLLGHSAKPMLNLTVDNLFLQHRFERVSVSEVGSDL 359 Query: 351 CLEY 354 L Y Sbjct: 360 KLVY 363 >gi|68171296|ref|ZP_00544696.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Sapulpa] gi|88658608|ref|YP_506994.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Arkansas] gi|67999277|gb|EAM85926.1| Riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Sapulpa] gi|88600065|gb|ABD45534.1| riboflavin biosynthesis protein RibD [Ehrlichia chaffeensis str. Arkansas] Length = 360 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 202/354 (57%), Gaps = 13/354 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 +D +FMS ALR +R +G NP+V C++V G+V+GRG T GG PHAEV AL AG Sbjct: 4 YDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGH 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+G+T YVTLEPCSHYG++ PCA +I+ G++R+V+ DPDVRVSG G++ L GI Sbjct: 64 LAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGID 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M E + + +++ R IT+K+A + D I + S IT +++N VH Sbjct: 124 VKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRNWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R+ DAI+VG T++ D+P L RL GL+ +SP+RI++D K+ IIKT+ + P Sbjct: 184 KQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSDVIP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILV-GRGVTSLLVEGGAAVAHS 301 I+T ND P L + + D +D L+ + +L G+T L VEGG + Sbjct: 244 TYILT-NDVPQTKLGK----ASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITE 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVC 351 + ++L+D II RS + G IPS + L NF V YF D+ Sbjct: 299 LLKNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIV 352 >gi|92117361|ref|YP_577090.1| riboflavin biosynthesis protein RibD [Nitrobacter hamburgensis X14] gi|91800255|gb|ABE62630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter hamburgensis X14] Length = 383 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 205/364 (56%), Gaps = 12/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D RFM AL R +G ++ NP+V +IVKD +++GRG T GG PHAE +AL AG Sbjct: 19 AVDLRFMQLALALGRRSLGASAPNPAVGAVIVKDDVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP V+G+G L GI Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVAGQGHARLRAAGI 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +E + R +KR H+ LK+AVS D I AG V ITG +K +V Sbjct: 139 SVDVGLCAAEAAHHHAGHFRRIRDKRPHVILKLAVSSDGRIAAAGGVPVAITGEAAKARV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ +AILVGIGTVLAD+P LTCRL G++ SP+R++LD ++ DS+++++A Sbjct: 199 HLLRAQCNAILVGIGTVLADNPLLTCRLPGMEARSPLRVVLDHALRIPHDSRLVRSARET 258 Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ ++ + +A+ + ++ DL +L L RGVT L+VEGGA Sbjct: 259 PLWVMASDLAQAPVAMKLGAAGVQVLRVPVAAGAPGLDLAAILRALSERGVTRLVVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA SF+ + LVD L R IG+ G+ + PL F D Sbjct: 319 RVASSFVAAGLVDEAWLLRGPDPIGDDGVAALGALPLTAITGSPQFRACASKTLDQDTLA 378 Query: 353 EYIG 356 Y Sbjct: 379 IYER 382 >gi|259416594|ref|ZP_05740514.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B] gi|259348033|gb|EEW59810.1| riboflavin biosynthesis protein RibD [Silicibacter sp. TrichCH4B] Length = 366 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 137/365 (37%), Positives = 196/365 (53%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RFM AL R G T NP+V C+IVK G V+GRG T GG PHAE AL + Sbjct: 1 MSKSDHRFMGLALSLGRRGQGRTWPNPAVGCVIVKQGRVVGRGWTQPGGRPHAEPMALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A GATAYV+LEPCSH+G++PPCAQ +I+ GI RVV ++D D RVSG+G + L Sbjct: 61 AGAAAHGATAYVSLEPCSHHGKTPPCAQALIDAGIARVVAAIEDSDPRVSGQGFEMLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E + R + R +TLK+A S D I S ITG ++ Sbjct: 121 GIKVTTGIRTEEAGFDHEGFFLRTEQGRPFVTLKLASSFDGRIATGSGQSQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G+ +H P R+++ H L L S++ ++A Sbjct: 181 MVHAMRARHDAVMVGAGTARADDPSLTVRDLGI-DHQPARVVVSRHLDLPLMSQLARSAK 239 Query: 242 LAPVIIVT-ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 P+ + D A+ ++ C+ D +L L G+T + EGG Sbjct: 240 DIPLYLCHGTGADTERLRAWEGLGAQLLSCNALGTQLDPHDVLEQLGSAGLTRVFCEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLE--KNFMCVRRDYFGSDVCL 352 A+A + + LVD +I + + + IG G+PS L G+L+ F + G+D+ Sbjct: 300 ALAATLLAHDLVDELIGFSAGLAIGAEGLPSIGALGIGHLKEAPRFELIETRPVGADILH 359 Query: 353 EYIGK 357 + Sbjct: 360 RWRRP 364 >gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2M] gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2] gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD1] gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD1] gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2] gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CGD2M] Length = 373 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++ Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD+++++ Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPQRVLVDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I + D A A + + I+ DL +L+ L RG+ L Sbjct: 241 G---APLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + R VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDA---RTRLTFHHIE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RIGDDLRI 362 >gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M01-240013] Length = 370 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 185/367 (50%), Gaps = 14/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M ALR + TS NP V C+I ++G+G G PHAEV AL + Sbjct: 2 FSDTDISMMENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L Sbjct: 62 AGEMAQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + +L+R +R + LK AVS D ++ S ITG ++ Sbjct: 122 GIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 V +LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ T Sbjct: 182 DVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLL-TDG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGG 295 +P I T + +R+ I DL L+ +L G ++VE G Sbjct: 240 QSPTYIATLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAG 299 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYFGSDV 350 + + +F+ L D I+LYRS ++G GG + V + G D+ Sbjct: 300 SELTSAFLAEDLADEIVLYRSPKILGGGGGGLFCLLENRAALSAPPLWTPVSSEILGHDI 359 Query: 351 CLEYIGK 357 + Sbjct: 360 KTVFRKN 366 >gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC 25196] gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira multiformis ATCC 25196] Length = 366 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 183/365 (50%), Gaps = 13/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D RFM+ ALR + + TS NP V C++V+DG V+G G G HAE+ AL Sbjct: 2 FSPTDYRFMAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGA AY+TLEPCSHYGR+PPCA +++ G+ +V+ + DP+ V+GRG L + Sbjct: 62 AGPAARGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +ME+E K +++R R + +KIA S D + S IT ++ Sbjct: 122 GIEVKTGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARR 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+S A++ GIGTVLADDP+LT R PM +++D + LD+ +++ A Sbjct: 182 DGHRWRARSCAVMTGIGTVLADDPQLTVRHIH-TSRQPMPVVVDRGLDIPLDAGLLRGAG 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297 ++ T +A R ++I DL ++ L + +LVE G+ Sbjct: 241 E---LVFTAAASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSG 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLE 353 + I + LVD ++Y + +IG L ++ G D+ + Sbjct: 298 LNGGLIQADLVDEFVIYLAPCLIGNAARDMLKLPELSNLEDKRALKIHNVRAVGQDIRII 357 Query: 354 YIGKN 358 G + Sbjct: 358 ARGPD 362 >gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae B728a] gi|63258396|gb|AAY39492.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae B728a] Length = 366 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 128/356 (35%), Positives = 182/356 (51%), Gaps = 20/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQAGELARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L GI + + Sbjct: 61 TAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQCGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +ESE + +L R ++ +K+A+S D MA S ITG +++ V LRAQ Sbjct: 121 LESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVLAD LT R + L +P+R+++D ++ LD+ + Sbjct: 181 SSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQA 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296 ++VT + + + D DL++L+ L RGV +LVE G Sbjct: 241 GSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMDELAARGVNEVLVEAGP 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 +A +F LVD L+ + +G P PL + V G+D Sbjct: 298 RLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 353 >gi|260772212|ref|ZP_05881128.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio metschnikovii CIP 69.14] gi|260611351|gb|EEX36554.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio metschnikovii CIP 69.14] Length = 369 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 183/368 (49%), Gaps = 27/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D + M+ A++ ++ T+ NP V C+I + G ++G G G PHAEV AL Sbjct: 4 NFSAVDYQMMARAIQLAQRGRFTTAPNPKVGCVITQQGRIVGEGFHYRAGQPHAEVHALR 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A E ARGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +VSGRG+ L + Sbjct: 64 MAKEYARGATAYVTLEPCSHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVSGRGIAMLRE 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E++ K+ A++ R ++ LK+A S D +A S IT ++ Sbjct: 124 AGIEVEVGLLEADAKVLNPAFIKRMQTGMPYVQLKLAASLDGQTALANGESQWITSAQAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFK 229 V + RAQ+ A+L TV+AD+ L R + P R+ILD + Sbjct: 184 QDVQVYRAQAGAVLSTSQTVIADNASLAVRWSELPADVQQQYPHAELRQPTRVILDRQHQ 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVT 288 L + T +P+I V E D + + + DL+ L L + + Sbjct: 244 LHQSLALYAT--TSPIIRVAEQDA--------ELCVPLNEHQQLDLRDTLASLAEQYQIN 293 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRD 344 L VE G +A S + +LVD +I+Y + ++G G G+ + + Sbjct: 294 HLWVEAGPTLAKSLLEQQLVDELIIYLAPKIMGSDGRGLLGALGFTHMDQALGLVIQDCR 353 Query: 345 YFGSDVCL 352 G D+ L Sbjct: 354 MVGPDLRL 361 >gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas sp. CNPT3] gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas sp. CNPT3] Length = 381 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 185/373 (49%), Gaps = 25/373 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D +MS AL ++ ++ NP+V C+IV D IV+G G G HAEV AL Sbjct: 6 FSEQDKEYMSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYALAM 65 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +A+ +T YVTLEPCSH+GR+PPCA +I+ G++RV V + DP+ +V+G+G++ L Sbjct: 66 AGSKAQSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + K ++ R + KR+ +TLK+ S D + S ITG S+ Sbjct: 126 GIEVSVGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRC 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHF 228 V RAQ AIL TVLADDP L R LQ+ P+RIILD Sbjct: 186 DVQHFRAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRN 245 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILV 283 KL+ KI +I+V L+ + + C DL+ LL +L Sbjct: 246 KLTGQEKIFSLPGD--IILVALQLRHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLN 303 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FM 339 + + +E GA +A +F ++LVD ILY++ ++G + + + Sbjct: 304 RYELNDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMGAQARSLVNLDDFSTMDDVLQLT 363 Query: 340 CVRRDYFGSDVCL 352 G+D+ + Sbjct: 364 LQEVTVIGNDIRI 376 >gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581] gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581] Length = 384 Score = 330 bits (846), Expect = 2e-88, Method: Composition-based stats. Identities = 116/376 (30%), Positives = 190/376 (50%), Gaps = 20/376 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + R+M+ ALR +R + T+ NP V C++VK+G VIG G G PHAE+ AL Sbjct: 1 MMSPTPPERWMARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH GR+ PCA ++E G+ RVVV + DP+ +V+GRG++ L Sbjct: 61 RNAGEAARGATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI + + ++E+E ++ R R + +K+A+S D M S ITG + Sbjct: 121 QAGIEVEEGVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLS 231 + +V LRA+S ++ G+ +V+ D+ LT R L+ PMR+++D +L Sbjct: 181 RREVQRLRARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGR- 285 L + ++ ++ + D + ++ DL+ LL+ L Sbjct: 241 LAAACLREPGR-TLVATVDGHDDEHREKLEQAGAEVVVLPAEEGGRVDLEALLSYLASHE 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCV 341 +L+E GA +A + +++ LVD + L+ + ++G P G ++ Sbjct: 300 EANEVLLETGATLAGAMLDAGLVDEMQLFVAPTLLGGEARPLFELPGLTRMDEQRPLDIR 359 Query: 342 RRDYFGSDVCLEYIGK 357 G D + + + Sbjct: 360 DIRAVGDDWRITAVPR 375 >gi|148976617|ref|ZP_01813304.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3] gi|145963968|gb|EDK29226.1| riboflavin-specific deaminase [Vibrionales bacterium SWAT-3] Length = 367 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 114/368 (30%), Positives = 181/368 (49%), Gaps = 27/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 S D + MS A+ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ Sbjct: 3 NFSPLDFQMMSRAIHLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAM 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GAT YVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L Sbjct: 63 RMAGDKAKGATVYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLR 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E + A++ R + LK+A S D +A S IT + Sbjct: 123 DAGIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSPAA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA++ A+L TV+ D+ L R L P+R+ILD Sbjct: 183 RRDVQNYRAKAGAVLSTSQTVIDDNASLNVRWAELPSSAQAHYAEANVRQPVRVILDRQN 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +L + K+ ++ PV+ V E + I DL +L+ L + Sbjct: 243 QLRPELKLYQSP--TPVLRVAEASADIE--------IGTTETGQLDLHELMCQLPANHID 292 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344 + VE GA +A S I ++LVD +ILY + ++G G G + Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVR 352 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 353 QVGVDIRI 360 >gi|238019274|ref|ZP_04599700.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748] gi|237863973|gb|EEP65263.1| hypothetical protein VEIDISOL_01138 [Veillonella dispar ATCC 17748] Length = 404 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 124/391 (31%), Positives = 180/391 (46%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + GI Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREAGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +T+K A+S D I S IT S+ H Sbjct: 123 VVCPVCSEECAELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNDSSRRDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------------EHSPMRIILDPHF 228 +LRA DA+LVGIGT+LAD+P+L CRL + H P IILD Sbjct: 183 ILRATHDAMLVGIGTILADNPQLNCRLTDTELSEALLDTSILDETIHVHQPDVIILDSLG 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI-----------------NIIYCD 271 + S + + I V++ A + +I Sbjct: 243 RTPTTSHVFEVDNRKVHIFVSKGCPKERIQALEQVGALVTVVESVATRKSKSTDIVIDIK 302 Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG + Sbjct: 303 KLSIDDILTKLGDFGYTSVLVEGGSAIISSFVETLNFDKVVTYIGNTIIGGTEATPAVGG 362 Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 E + + +++ +E + Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393 >gi|218710376|ref|YP_002417997.1| riboflavin biosynthesis protein RibD [Vibrio splendidus LGP32] gi|218323395|emb|CAV19572.1| Riboflavin biosynthesis protein ribD [Vibrio splendidus LGP32] Length = 374 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 109/368 (29%), Positives = 175/368 (47%), Gaps = 27/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 + D + MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G HAEV A+ Sbjct: 3 NFTPLDFQMMSRAIKLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEAHAEVHAM 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG++A+GA AYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L Sbjct: 63 RMAGDKAKGAIAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLR 122 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 I + ++E + A++ R + LK+A S D + S IT + Sbjct: 123 DACIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RA+S A+L TV+ D+ L R L P+R+ILD Sbjct: 183 RRDVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKEHYAEDELRQPIRVILDRQN 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +L + K+ +T + T D + DL L+ L + Sbjct: 243 QLYPELKLFQTPTSVLRVAETSAD----------IEVETTDAGQLDLHDLMRQLPANHID 292 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRD 344 + VE GA +A S I ++LVD +ILY + ++G G G + Sbjct: 293 HIWVEAGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVR 352 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 353 QVGVDIRI 360 >gi|49088842|gb|AAT51612.1| PA4056 [synthetic construct] Length = 374 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 178/365 (48%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MYAADPLYMARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V L A+S +L G T+LADD L R + L P+R+++D ++ Sbjct: 181 AVQRLSARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|254431289|ref|ZP_05044992.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001] gi|197625742|gb|EDY38301.1| riboflavin biosynthesis protein RibD [Cyanobium sp. PCC 7001] Length = 371 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 178/357 (49%), Gaps = 11/357 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL+ + G TS NP V C+++ +G ++G G + G HAEV AL +AGE ARG Sbjct: 1 MQRALQLANLGCGRTSPNPMVGCVVLDAEGRLVGEGYHSQAGEAHAEVGALRQAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC H+GR+PPC+ ++ GIRRVVV + DPD +V+G G+ L G+ +++ Sbjct: 61 GTAVVTLEPCCHHGRTPPCSDALLAAGIRRVVVAMADPDPQVAGGGIAQLRSAGVEVIEG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + A+L R +R LK A+ D + S I+G ++N VH LRA Sbjct: 121 VAAEEARALNRAFLHRIAHRRPFGILKWAMGVDGRTALPNGASQWISGPEARNWVHALRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++VG GTV ADDP LT R G + P+R++L L +++ TA AP ++ Sbjct: 181 RCDAVVVGGGTVRADDPLLTSR--GRRHSEPLRVVLSRSLALPERARLWDTA-QAPTLVA 237 Query: 249 TENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + P ++ I + + + L+ L RG +L E GA +A + + Sbjct: 238 HGYEAPARRRFQLDQRGIERLVLEACEPWALMQELARRGCNQVLWECGAELATAALRQSC 297 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGKNL 359 V + + V+G +P+ + + G D+ + L Sbjct: 298 VQEVAAVIAPKVMGGTLARTPVGDLGFTGMQQVPAWQTTCPQQLGDDLLWQLHAPEL 354 >gi|313894496|ref|ZP_07828060.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon 158 str. F0412] gi|313440892|gb|EFR59320.1| riboflavin biosynthesis protein RibD [Veillonella sp. oral taxon 158 str. F0412] Length = 404 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 121/391 (30%), Positives = 178/391 (45%), Gaps = 39/391 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ ++ G TS NP V ++VKD +IG G G HAEV AL +AG+ Sbjct: 3 DDVAYMKRAIALAKLATGHTSPNPLVGAVVVKDNTIIGEGYHHKAGTAHAEVHALNQAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A+GAT YVTLEPCSHYG++PPCA IIE GI +VVV DP+ VSG+G+ L + I Sbjct: 63 NAKGATLYVTLEPCSHYGKTPPCALRIIEAGIAKVVVGSTDPNPLVSGKGMDLLREASIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + E + T + +T+K A+S D I S IT S+ H Sbjct: 123 VVCPVCSEECVELNEHFFTYIQTGKPFVTIKSAMSLDGKIATFTGQSQWITNESSRRDGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------------EHSPMRIILDPHF 228 +LRA DA+L+GIGT+LAD+P+L CRL + H P IILD Sbjct: 183 VLRATHDAMLIGIGTILADNPQLNCRLTDTELSEALLDTSILDEPIHVHQPDVIILDSLG 242 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---------------- 272 + S++ + I V+ A + + Sbjct: 243 RTPTTSRVFEVENRKVHIFVSTGCPKDRIQALENAGAIVTVVESISTRKSKSTDIVIDIK 302 Query: 273 -RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +LT L G TS+LVEGG+A+ SF+ + D ++ Y +IG + Sbjct: 303 KLSIDDILTKLGEIGYTSVLVEGGSAIISSFVETMNFDKVVTYIGNTIIGGTEATPAVGG 362 Query: 332 GYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 E + + +++ +E + Sbjct: 363 RGFESLESSPQLTFTKTNILDNNIRIEAYRQ 393 >gi|161830583|ref|YP_001596568.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331] gi|161762450|gb|ABX78092.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 331] Length = 354 Score = 329 bits (845), Expect = 3e-88, Method: Composition-based stats. Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKDVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ I LD H +L L++ +I Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + ++ D +KNI I + DL ++L ++ G+ L +E G Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353 SF+ L++ ++Y + ++G +P+ L +F V FG DV E Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351 >gi|59711307|ref|YP_204083.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Vibrio fischeri ES114] gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase [Vibrio fischeri ES114] Length = 372 Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 189/370 (51%), Gaps = 22/370 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ ++ + T+ NP+V C++VK+G +IG G G PHAEV AL Sbjct: 1 MTFTTQDHLMMQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+EA+GATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L Sbjct: 61 RQAGKEAQGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLD 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++E++ + +LTR + + LK+A S D + S IT + Sbjct: 121 EAGIETASGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 + V RAQS AIL TV+ DD L R + L PMR ILD Sbjct: 181 RQDVQRYRAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQH 240 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTIL-VGRG 286 L+ D K+ + + +VT + + + ++ D + DLK+++ + Sbjct: 241 SLTSDLKLFQASDE----VVTISSQNTHPIGTSENHMQCRVDDGQLDLKEVVNKISRDFN 296 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVR 342 V + VE GA +A S IN LVD +I+Y + ++G G LE + Sbjct: 297 VNHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADGRSIINLIGLETMSEAIDLDIKD 356 Query: 343 RDYFGSDVCL 352 G D+ + Sbjct: 357 IRMVGKDIRI 366 >gi|317969093|ref|ZP_07970483.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / [Synechococcus sp. CB0205] Length = 371 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 183/360 (50%), Gaps = 10/360 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M S++ +M AL+ + G TS NP V C+++ + G ++G G G PHAEV A Sbjct: 12 MSSSAW-RPWMQRALQLAALGAGRTSPNPLVGCVVLDRQGALVGEGFHRRAGTPHAEVHA 70 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AGE A+G TA V+LEPC H+GR+PPC++ +I G+RRVVV + DPD RV+G G+ L Sbjct: 71 LSQAGERAQGGTAIVSLEPCCHHGRTPPCSEALIAAGVRRVVVAMRDPDPRVAGGGIAQL 130 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI ++ + E+E + +++ R R LK A+S D + S I+G Sbjct: 131 QAAGIEVISGVCEAEAQALNRSFIQRVQTGRPWGILKWAMSLDGRTALPNGASQWISGPP 190 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ VH LRAQ DA+LVG GTV AD+P LT R G + P+R++L L D+++ Sbjct: 191 ARAWVHQLRAQCDAVLVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRSLDLPQDTQLWD 248 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +L +++ + + + + L +L RG +L E GA + Sbjct: 249 QSLAQTLVLHGSKAPAERQQQLDRLGVEHLALPECQPRAALELLAQRGCNQVLWECGAEL 308 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353 A + + V + + ++G +PL E L + + R G+D LE Sbjct: 309 AAAALREGCVQQLAGVIAPKLLGGLAARTPLGELGLVDVNQAETWPQQRLRRLGNDWLLE 368 >gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia vietnamiensis G4] gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia vietnamiensis G4] Length = 373 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 25/368 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + GAT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGCDVAGATVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAYEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV D+P LT R P R+++D L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQPQRVLVDSRLDLPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPV---LALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I D A + + ++ DL +L L RGV L Sbjct: 241 G---APLLIFCGRLDAAGEIRANVLQSRGAEVVSLANMQGKVDLPGMLAALGARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S + + VD +++Y + ++G P+ L+ + Sbjct: 298 VEAGHKLNGSLLREQCVDELLVYLAPSLLGSDAAAMFDLAAPTSLDG---RTRLAFHSVE 354 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 355 RVGDDLRI 362 >gi|153209016|ref|ZP_01947210.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat Q177'] gi|165920291|ref|ZP_02219563.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334] gi|212219122|ref|YP_002305909.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii CbuK_Q154] gi|120575553|gb|EAX32177.1| riboflavin biosynthesis protein RibD [Coxiella burnetii 'MSU Goat Q177'] gi|165916847|gb|EDR35451.1| riboflavin biosynthesis protein RibD [Coxiella burnetii RSA 334] gi|212013384|gb|ACJ20764.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii CbuK_Q154] Length = 354 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ I LD H +L L++ +I Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + ++ D +KNI I + DL ++L ++ G+ L +E G Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353 SF+ L++ ++Y + ++G +P+ L +F V FG DV E Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351 >gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 369 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 13/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI + Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFC 239 Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + A A R + I+ DL +L L RG+ L VE G + S Sbjct: 240 GALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + R VD +++Y + ++G + + G D+ + Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRI 353 >gi|29653981|ref|NP_819673.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii RSA 493] gi|29541244|gb|AAO90187.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii RSA 493] Length = 354 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 116/359 (32%), Positives = 180/359 (50%), Gaps = 14/359 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + G++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLGDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIVGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ I LD H +L L++ +I Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + ++ D +KNI I + DL ++L ++ G+ L +E G Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353 SF+ L++ ++Y + ++G +P+ L +F V FG DV E Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFGEDVMGE 351 >gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016] gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016] Length = 368 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 184/367 (50%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D + M A+ ++ + T+ NP+V C++++DG ++G G G PHAEV A+ Sbjct: 4 FTAIDRQMMLRAIALAKRGLYTTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RVV ++DP+ +V+GRG L + Sbjct: 64 AADKAKGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++++E + A++ R + LK+A S D +A S IT ++ Sbjct: 124 GIEVSVGLLQAEAEALNPAFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARR 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQS AIL TVLAD+ L R + L P R++LD +L Sbjct: 184 DVQRFRAQSGAILSTSKTVLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAEL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289 S + K+ +T +I+ + D P + N L +L T L + + Sbjct: 244 SPELKLYQTEGE-RLIVGPKGDLPAPLDEHGQIN----------LPQLFTQLSQTQSINH 292 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345 L VE GA +A I +LVD +I+Y + ++G G G + Sbjct: 293 LWVEAGATLAAGLIKHQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSHVIDLDIKDVRM 352 Query: 346 FGSDVCL 352 G D+ + Sbjct: 353 VGPDIRI 359 >gi|254511482|ref|ZP_05123549.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium KLH11] gi|221535193|gb|EEE38181.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium KLH11] Length = 358 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 133/354 (37%), Positives = 193/354 (54%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C+IV+DG ++GRG T GG PHAE QAL +AGE A+GA Sbjct: 1 MALALSLGRRGQGNCWPNPAVGCVIVRDGRIVGRGWTQPGGRPHAEPQALAQAGEAAKGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPCSHYG++PPCAQ +I G+ RVV ++D D RV+G+G L GI V + Sbjct: 61 TAYVSLEPCSHYGKTPPCAQVLIGAGVARVVSAIEDSDPRVAGQGFDMLRAAGIEVTSGV 120 Query: 131 ESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E H + + + R +TLK+A S D I S ITG +++ VH +RA+ Sbjct: 121 LAEQAAQDHAGFFLKTEQGRPFVTLKLASSFDGRIATETGHSQWITGPMARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT ADDP LT R G+ H P+R+++ H + L + +TA PV + Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGVT-HQPVRVVVSRHLDVPLMGHLARTATQMPVWLCH 239 Query: 250 END-DPVLALAFRKKNINIIYC--DCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A A+ +I C D ++ LL L G+T + EGG+A+A S + Sbjct: 240 GPHPDAERARAWEGLGARLIPCALDGHHVEAADLLQQLGQAGLTRVFCEGGSALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 LVD ++ + + + IG G+P+ L+ F + G D+ + Sbjct: 300 GDLVDELVGFTAGLAIGAEGLPAIGVLGLDTLEGAPRFDLIETQAIGGDILHRW 353 >gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC 17616] gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia multivorans ATCC 17616] gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC 17616] gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia multivorans ATCC 17616] Length = 373 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 182/365 (49%), Gaps = 19/365 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++ Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD+++++ Sbjct: 182 ARADGHAWRARACAILTGIGTVREDDPQLTVR-GVDTPRQPQRVLVDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVT---ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 AP++I + D A A + + I+ DL +L+ L RG+ L Sbjct: 241 G---APLLIFCGRLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMCV--RRDYFG 347 VE G + S + R VD +++Y + ++G L+ V + G Sbjct: 298 VEAGHKLNGSLLRERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLVFHHIERIG 357 Query: 348 SDVCL 352 D+ + Sbjct: 358 DDLRI 362 >gi|78046354|ref|YP_362529.1| riboflavin biosynthesis protein RibD (diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-[5-phosphoribosylamino]uracil reductase) [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 369 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 120/359 (33%), Positives = 187/359 (52%), Gaps = 8/359 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+ D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 7 TASADDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPC+HYGR+PPCA +I+ G+ RVV + DP +V+G G L + Sbjct: 67 AAGELARGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLRE 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI ++ +M ++ + +L+R R + +K+ S D +A S ITG ++ Sbjct: 127 AGIEVLSGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKT 239 RA++ AIL G GTV+ADDP +T RL + P+R++LD + I + Sbjct: 187 ADGQRWRARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRTLACRNIRQG 246 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP + + + +L + + DL +L +L RG+ + VE GA ++ Sbjct: 247 N--APTLYLHGENVAAPSLDDAQFLAMPLQAGRFDLAAVLALLAERGINEVHVEAGAMLS 304 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + + LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRLRY 363 >gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio coralliilyticus ATCC BAA-450] gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio coralliilyticus ATCC BAA-450] Length = 368 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 30/374 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D + MS A+ ++ + T+ NP+V C+I D ++G G G PHAEV AL Sbjct: 4 FTPQDYQMMSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHALRM 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ ++DP+ +V+GRG++ L Sbjct: 64 AGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKMLCDA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ES+ A++ R + LK+A S D ++ S IT ++ Sbjct: 124 GIEVQVGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQARQ 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQ+ AIL TV+ D+ L R L E P+R++LD +L Sbjct: 184 DVQNYRAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLPESEVRQPVRVVLDRQQQL 243 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289 S + K T V+ + P+L + + DLK LV + Sbjct: 244 SSELKFYSTDGERIVVSAQGDVAPLLNDS-----------EQIDLKSTFANLVSHHNINH 292 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD----- 344 L VE GA +A S I LVD +ILY + ++G G LE + D Sbjct: 293 LWVEAGATLASSLIKEGLVDELILYLAPKIMGSDGR-GLFGALGLESMAEVIELDIQDIR 351 Query: 345 YFGSDVCLEYIGKN 358 G D+ L KN Sbjct: 352 QVGQDIRLVARLKN 365 >gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99] gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99] Length = 380 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 127/377 (33%), Positives = 190/377 (50%), Gaps = 31/377 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL Sbjct: 2 WSIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAM 61 Query: 63 AGEEA------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A + A +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ RVSGRG+ Sbjct: 62 ATQRADGLADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGI 121 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L GI + ++ E ++ R +T+K+A S D ++ S IT Sbjct: 122 NMLKDAGIKVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWIT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225 G S+ V LRA+S A++ GI TVL DDP L R + L P+R+ILD Sbjct: 182 GPESRRDVQRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILD 241 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLT 280 +L+ +K+ A+ +P+++V+ D P ++++ + +L L + Sbjct: 242 SRARLTSSAKLF--AITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFS 299 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLE 335 L S+L+E GA +A S I+ D +ILY++ ++G G +P + + Sbjct: 300 HLGKT-CNSVLIEAGATLAGSVISHNHADELILYQAMKLLGANGRNLISLPDYTDMADIP 358 Query: 336 KNFMCVRRDYFGSDVCL 352 + G D L Sbjct: 359 S-VELIDERKLGDDTRL 374 >gi|316934111|ref|YP_004109093.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris DX-1] gi|315601825|gb|ADU44360.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris DX-1] Length = 389 Score = 329 bits (843), Expect = 6e-88, Method: Composition-based stats. Identities = 157/360 (43%), Positives = 207/360 (57%), Gaps = 12/360 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE Sbjct: 27 DQRFMQLALALGRRGQGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALRRAGEA 86 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+GRSPPCA I+ GI RVV ++DP+ V+G+G L GI + Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIVAAGIARVVSAIEDPNPLVAGQGHAKLRAAGIAV 146 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E +L R +R H+TLK+AVS D I AG V ITG + + HL Sbjct: 147 EIGICADEATHDHAGHLCRISARRPHVTLKLAVSADGKIAAAGHKQVAITGEAANARTHL 206 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+SDA+LVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A + Sbjct: 207 LRARSDAVLVGIGTVLADDPELTCRLPGMAAQSPIRVVLDRSLRIPSASKLVHSARTTSL 266 Query: 246 II-VTENDDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + +E D A +++ DL +L L +GVT LLVEGGA V Sbjct: 267 WLMASEIADAATAARLGAAGAEVVHVADCAAAPGLDLPAVLHALSDKGVTRLLVEGGARV 326 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +F+ R D I L+RS+ IG G+ + PL ++ + GSD Y Sbjct: 327 AAAFVTQRRADEIRLWRSETTIGPDGVDALAGLPLAAITDSPHWRVRSSERVGSDTLTIY 386 >gi|91202314|emb|CAJ75374.1| strongly similar to riboflavin biosynthesis protein RibD [Candidatus Kuenenia stuttgartiensis] Length = 367 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 14/365 (3%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP + D +M+ AL + G+ NP V +IVK+ ++G+G G HAE+ A Sbjct: 1 MPLMKEHDEEYMTLALELAEKGRGMVEPNPMVGAVIVKNNEIVGKGYHKNYGGAHAEIHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + E G +GAT YVT+EPC+HYG++ PCA II GI +VV DP+ SG+G++ L Sbjct: 61 INEGGVNCKGATLYVTMEPCAHYGKTAPCAAAIILAGIAKVVTTCVDPNPVTSGKGVKQL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + +ME + K + + +I +K A+S D I S IT Sbjct: 121 QAAGITVRMGVMEDQAKKLNAPFFKLIQKGMPYIIVKWAMSIDGKIATVTGDSKWITSEE 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ VH LR+Q D ++VGI TVL DDP LTCR NG +P RII+D L L S +I+ Sbjct: 181 SRRYVHTLRSQVDGVMVGINTVLKDDPLLTCRFNG--GRNPKRIIIDSRASLPLTSALIR 238 Query: 239 TALLAPVIIVTENDDPVLALA-FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVE 293 T + +II + P + R+ +I D DLK+L L +T+++VE Sbjct: 239 TVQQSEIIIAVSKNAPQKKVEILRQSGCRVIETNGDYDHVDLKELFLKLGSMRLTNIMVE 298 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGS 348 GG+ + S + RL D II++ + I+IG G SP+ +E VR F Sbjct: 299 GGSKIITSLLKERLADKIIVFIAPIIIGGCGDTSPVLGKGVENVCDALKIREVRHYRFSD 358 Query: 349 DVCLE 353 D+ +E Sbjct: 359 DIVVE 363 >gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12] gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12] Length = 379 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 126/376 (33%), Positives = 192/376 (51%), Gaps = 30/376 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D FMS A++ +R + T NP V C+I D ++G G G PHAEV AL Sbjct: 2 WSIEDTEFMSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAM 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + A +GATAYVTLEPCSHYGR+PPCA+ +I+ GI RVVV V+DP+ +VSGRG++ Sbjct: 62 ATKRASQAALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIK 121 Query: 118 WLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI VD ++ E ++ R +T+K+A S D ++ S ITG Sbjct: 122 MLRDAGIEVDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITG 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDP 226 S+ V LRA+++A++ GI TVL DDP L R + L H P+R++LD Sbjct: 182 PESRRDVQRLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDS 241 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTI 281 +L+ +K+ + +P+++V+ D P ++++ + +L L Sbjct: 242 RARLTSTAKLFT--VTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAH 299 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEK 336 L S+L+E GA +A S I+ D +ILY++ ++G G +P + + Sbjct: 300 LGKT-YNSVLIEAGATLAGSVISQNHADELILYQAMKILGSNGRNLISLPDYTDMADIPS 358 Query: 337 NFMCVRRDYFGSDVCL 352 + G D L Sbjct: 359 -VELIDERKLGGDTRL 373 >gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1] Length = 371 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 193/372 (51%), Gaps = 25/372 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL + +G TS NP V C++V+DG ++G G G HAEV AL++A Sbjct: 11 DEYYMRRALSLALRGMGRTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERR 70 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARGA YVTLEPC H+GR+PPCAQ ++ G+ RVV DP+ RV+ GL L + G Sbjct: 71 GETARGAEVYVTLEPCCHFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAG 130 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + +E E + ++ Q R +TLK A D + + S ITG ++ Sbjct: 131 VEVSAPCLEEEARRVNKGFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQW 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H +RA DAILVG+ TVL DDPELT R + SP+R+ILD H + ++ ++ Sbjct: 191 AHGMRASHDAILVGVSTVLKDDPELTVR--HTEGKSPLRVILDSHLRTPTSARALRGGC- 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAV 298 +I+T + + A A + ++ R DL+ L L GV +L+VEGG V Sbjct: 248 ---LILTISQEAERARALQAAGARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRV 304 Query: 299 AHSFINSRLVDSIILYRSQIVI------GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + L DS+ L+ + V+ GEG P+ + E + N V G ++ + Sbjct: 305 LTALMEGHLADSLSLFVAPRVLGEGIGMGEGFSPASVAESF---NLKDVTSRPVGDNLLV 361 Query: 353 EYIGKNLCLQEL 364 E G+ C +L Sbjct: 362 E--GRFSCSPDL 371 >gi|157413823|ref|YP_001484689.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9215] gi|157388398|gb|ABV51103.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9215] Length = 364 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 9/358 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 ++M A+ + TS NP V +I+ K+G +I G G PHAE A ++ Sbjct: 9 KKWMKRAIFLASLGKNTTSPNPRVGAVILDKNGKLISEGFHFKAGMPHAEAMAFNNLKKD 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARG YV LEPC H+GR+PPC +I GI+R + ++DPDVRV+G+G++ L + GI V Sbjct: 69 ARGGAIYVNLEPCCHHGRTPPCVDKVISSGIKRAYISIEDPDVRVAGKGIKKLEEAGIQV 128 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E A++ R K++ K A+S D I + S IT S+ VH Sbjct: 129 HLGLCKKESLDLNKAFIYRNTTKKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHS 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+ DAI++G T+ D+P LT R GL+ P+R++ L S + + Sbjct: 189 FRAEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTL 246 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + L K++ + + + + IL RG ++L E G +A + I + Sbjct: 247 VIYDSSTANENYLTRIPKSVEVEKVSSDNPELISKILAKRGCNNVLWECGPRLATAAIKT 306 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGKN 358 + II + + ++G +PL + + ++ G D+C++ + KN Sbjct: 307 NCIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSKSQLSLIGDDICVKSLFKN 364 >gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus 12B01] gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus 12B01] Length = 364 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 177/360 (49%), Gaps = 27/360 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+ Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI + Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEVEI 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E + A++ R + LK+A S D + S IT ++ V R Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKI 236 A+S A+L TV+ D+ L R L P+R+ILD +L + K+ Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 +T V+ V E + + DL L+ L + + VE GA Sbjct: 241 FQTPTS--VLRVAEASADIE--------VGTTEAGQLDLHDLMRQLPANHIDHIWVEAGA 290 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352 +A S I ++LVD +ILY + ++G G G + G D+ + Sbjct: 291 TLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350 >gi|254459689|ref|ZP_05073105.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2083] gi|206676278|gb|EDZ40765.1| riboflavin biosynthesis protein RibD [Rhodobacteraceae bacterium HTCC2083] Length = 364 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 126/354 (35%), Positives = 190/354 (53%), Gaps = 11/354 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL +R +G T NP+V C+IV G ++GRG T GG PHAEV AL +AG+ Sbjct: 5 DQAYMKMALSLARRGLGRTWPNPAVGCVIVNAGRIVGRGWTQVGGRPHAEVVALVQAGKR 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GATAYVTLEPC+H+G++PPC++ +IE GI RVV ++D D RVSGRG L G++V Sbjct: 65 ANGATAYVTLEPCAHHGQTPPCSEALIEAGIARVVAAMEDSDPRVSGRGFAQLRGAGVVV 124 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + + + R +TLK+A+S D I S ITG ++ VH Sbjct: 125 ETGICAKDAAESNAGFFLKTEVGRPFVTLKLALSLDGRIATLTGDSQWITGSEARRAVHA 184 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+L+G GT DDP LT R G+ H P+R++ K+ L+S + KTA PV Sbjct: 185 MRATHDAVLIGAGTARGDDPSLTVRGLGI-GHQPVRVVAAQSLKIDLESSLAKTARDVPV 243 Query: 246 IIVTENDDPVL-ALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + +D A+ +I C+ + +++ L +G+T + EGG +A Sbjct: 244 WLCHGSDVKDEDRAAWIDLGAELIACETDASGLEPHQMMQALGHKGLTRVFCEGGGHLAA 303 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDV 350 S + + LVD ++++ + + IG G+ G+ F G D+ Sbjct: 304 SLLRADLVDRLVIHSAGVAIGGDGLAGLASMGHDVLADAARFRLASHRQLGVDI 357 >gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa C3719] gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa C3719] Length = 373 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 179/365 (49%), Gaps = 22/365 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M+ AL +R + T NP V C++VKDG V+G G G PHAEV AL + Sbjct: 1 MNAADPLYMARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+GRGL L Q Sbjct: 61 AGENARGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+E + ++ R + +K+A+S D MA S ITG +++ Sbjct: 121 GIAVQSGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARS 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPEL--TCRLNG--------LQEHSPMRIILDPHFKLS 231 V LRA+S +L T+LADD L T R G P+R+++D ++ Sbjct: 181 AVQRLRARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRVP 240 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGV 287 L+S + P ++ T F+ ++ DL KLL L RG Sbjct: 241 LESAFYQ---AGPALVATCAAASARER-FQDAGHELLALPSAEGHVDLHKLLLELAARGA 296 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +LVE G +A +F LVD L+ + +G P PL Sbjct: 297 NEVLVEAGPRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIR 356 Query: 345 YFGSD 349 G D Sbjct: 357 AVGDD 361 >gi|188996871|ref|YP_001931122.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp. YO3AOP1] gi|188931938|gb|ACD66568.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium sp. YO3AOP1] Length = 371 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 118/327 (36%), Positives = 168/327 (51%), Gaps = 10/327 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+++A E Sbjct: 8 ESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKG 67 Query: 66 -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +G+T +VTLEPC HYGR+PPC IIE GI +V+ V D + V G+G+ L GI Sbjct: 68 YDLKGSTMFVTLEPCCHYGRTPPCTNAIIEEGISEIVIGVLDQNPVVKGQGVNILKSHGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E + + T EKR + LK+A S D I S IT S+ Sbjct: 128 KVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKTGDSKWITSEKSRQFA 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR ++ AILVG T L D+P LT R E P+RI++D K+ I Sbjct: 188 HQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPVRILIDKRLKVPPTYNIYNNEAKT 246 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298 VI L K+N+ I++ D + + +L L R + LLVEGG V Sbjct: 247 IVITSKLASQENLKRLSEKENVEIVFLDLDENENFKIDDILKTLYAREIVHLLVEGGRGV 306 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 I R D I ++ + I+IG+ GI Sbjct: 307 ITDLIKERKFDKISIFTAPILIGDDGI 333 >gi|296269350|ref|YP_003651982.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM 43833] gi|296092137|gb|ADG88089.1| riboflavin biosynthesis protein RibD [Thermobispora bispora DSM 43833] Length = 362 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 120/360 (33%), Positives = 179/360 (49%), Gaps = 10/360 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 ++S D +M A+ + G TS NP V C++V G ++G G AY G PHAE+ AL Sbjct: 1 MTSRDDHYMRRAIELAARGHGGTSPNPVVGCVVVDPTGEIVGEGFHAYAGGPHAEIVALR 60 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AGE ARGATAYVTLEPC H GR+ PC +++ G+ RVVV V DP+ +G L Sbjct: 61 QAGERARGATAYVTLEPCDHTGRTGPCTAALLQAGVARVVVAVPDPNPVAAGGAETLLRH 120 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + ++ +E + +LT +R +T K A + D A S IT ++ Sbjct: 121 GVTVDVGVLAAEAERVNEEWLTYMRARRPFVTWKFAATIDGRSAAADGTSKWITSPEARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-MRIILDPHFKLSLDSKIIKTA 240 VH LRA SDAI+ GIGTVLADDP LT R + P +R+++D + ++++ Sbjct: 181 DVHRLRAASDAIVAGIGTVLADDPRLTVRTPEPRRTRPVLRVVVDSGARTPAGARVLDGE 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP ++ +D + + D DL+ LL L R V S+L+EGG +A Sbjct: 241 --APTLVAVADDAD--PPPHLGDAVRLPRADGGLDLRALLAELHRRQVVSVLLEGGPTLA 296 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 SF+ LVD ++ Y + ++G G P+ + G D+ + Sbjct: 297 GSFLREGLVDRVVGYLAPALLGAGSAALGPAGVTTIAERHRLEFEEVTRIGPDLKVVLRP 356 >gi|257126309|ref|YP_003164423.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis C-1013-b] gi|257050248|gb|ACV39432.1| riboflavin biosynthesis protein RibD [Leptotrichia buccalis C-1013-b] Length = 371 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 197/369 (53%), Gaps = 18/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M A+ ++ + NP V ++V+ G VIG G Y G PHAEV AL+EA Sbjct: 4 NIDEKYMRMAIELAKKGARAVNPNPMVGAVVVQAGKVIGTGYHKYFGGPHAEVYALDEAS 63 Query: 65 EEARG---ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + ++ AT YVTLEPCSHYG++PPCA+ I++ G++R V+ DP+ +V+G+G+Q L Sbjct: 64 KNSKDLSNATIYVTLEPCSHYGKTPPCAEKIVKLGLKRCVIGSSDPNPKVAGKGVQILKN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +++ E + + K ++ LK A++ D I S IT ++ Sbjct: 124 AGIGVAENVLKEECDKLNQVFFKYILTKLPYLFLKCAITLDGKIATKTGNSKWITNEAAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + I+VGI TVLAD+P LT R+ +P RII+DPH K IIK Sbjct: 184 EKVQFYRNKFMGIMVGINTVLADNPSLTARIE--NGVNPYRIIIDPHLKTEKIHNIIKEN 241 Query: 241 LLAPVIIVTE--NDDPVLALAFRKKN-INIIYCDC--RDLKKLLTILVGRGVTSLLVEGG 295 + IIVT N + L F + N + ++ + K++L + G+ S+L+EGG Sbjct: 242 IDEKTIIVTSEKNKNSEKQLDFSENNKVKFVFLNGTKFSFKEILEKIGTLGIDSILLEGG 301 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSD 349 + ++D+ ++ + ++G+ S + G+ +KN V+ + +G + Sbjct: 302 QLLISQAFEEDVIDAGEIFIANKILGDTEGKSFIA-GFDKKNMDESIILKNVKYNIYGEN 360 Query: 350 VCLEYIGKN 358 V +E++ K+ Sbjct: 361 VGMEFLQKS 369 >gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222] gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222] Length = 364 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 113/360 (31%), Positives = 177/360 (49%), Gaps = 27/360 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 MS A++ ++ + T+ NP+V C+IV+ DG ++G G A G PHAEV A+ AG++A+ Sbjct: 1 MMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMAGDKAK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG++ L GI + Sbjct: 61 GATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDVEI 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E + A++ R + LK+A S D + S IT ++ V R Sbjct: 121 GLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQNYR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKI 236 A+S A+L TV+ D+ L R L P+R+ILD +L + K+ Sbjct: 181 AKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPELKL 240 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 +T V+ V E + + DL L+ L + + VE GA Sbjct: 241 FQTPTS--VLRVAEASADIE--------VGTTEVGQLDLHDLMRQLPANHIDHIWVEAGA 290 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352 +A S I +RLVD +ILY + ++G G G + G D+ + Sbjct: 291 TLAKSLIEARLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI 350 >gi|67924763|ref|ZP_00518165.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Crocosphaera watsonii WH 8501] gi|67853388|gb|EAM48745.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Crocosphaera watsonii WH 8501] Length = 348 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 104/335 (31%), Positives = 172/335 (51%), Gaps = 10/335 (2%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 + NP V ++VK+G +IG G G PHAEV AL +AGE A G T YV LEPC+HYGR+ Sbjct: 8 NPNPMVGAVVVKNGQIIGEGFHPKPGDPHAEVFALRDAGENAAGGTVYVNLEPCNHYGRT 67 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTR 144 PPC + +I + +VVV + DP+ VSG+GL L GI ++ + E+ + A+ R Sbjct: 68 PPCTEALIAARVAKVVVGMVDPNPLVSGKGLAKLEDAGIEVIVGVEETACRRLNEAFCHR 127 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 + + LK A++ D I + S +TG S+ VH RA DA++VG TV D+ Sbjct: 128 ILHHQCFGILKYAMTLDGKIATSTGHSAWVTGTTSRQLVHQTRAGCDAVIVGGNTVRRDN 187 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKK 263 P LT ++ +P+R+++ + L ++ + +AP ++ TE +P L R K Sbjct: 188 PHLT--IHQATGRNPLRVVMSRNLHLPQEANLWDV-QVAPTLVFTEWGKNPSLQAELRSK 244 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + ++ +++ +L R ++S+L E G + I ++ ++ + + +IG Sbjct: 245 GVEVLELSPLSPAQVMEVLYERQLSSILWECGGVLGAQAIREGVIQKVMAFMAPKIIGGV 304 Query: 324 GIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLE 353 SP+ + LEK V D+ +E Sbjct: 305 SAASPVGDLGLEKMSDALLLESVILRQVDQDILVE 339 >gi|189346359|ref|YP_001942888.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245] gi|189340506|gb|ACD89909.1| riboflavin biosynthesis protein RibD [Chlorobium limicola DSM 245] Length = 372 Score = 328 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 119/358 (33%), Positives = 177/358 (49%), Gaps = 17/358 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65 +M + G S NP V C+IV G VIG G G PHAEV A+ E Sbjct: 13 EHYMQRCHELALMGSGAVSPNPMVGCVIVSGGQVIGEGFHRQYGGPHAEVNAVASVADRE 72 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 R AT YV LEPCSH+G++PPC+ I+E GI RVV+ DP ++V+G+G+ L G+ Sbjct: 73 RLRNATLYVNLEPCSHFGKTPPCSDMIVEMGIPRVVIGCRDPHLKVAGKGIAKLLAGGVE 132 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ ++E+E + A++T + R + LK+A S D I S ITG ++ +VH Sbjct: 133 VIEGVLETESERLNEAFITVHRKGRPFVALKLAQSLDGKIATVSGASKWITGEEARTEVH 192 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA+L G TV+ADD LT R +P+R++LD + + + I T Sbjct: 193 RLRCSFDAVLTGAATVIADDSRLTVR--HCAGRNPIRVVLDSRLSIPIGAGIFDTEAETV 250 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 V D A KK + + R DL +L L R + S+LVEGG + Sbjct: 251 VFTALSMQDSQKARQLAKKGVAVFGVAERECGLDLAAVLERLHERRILSVLVEGGGRLGS 310 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP------LEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ L D + ++ + ++ G G+ + L E + +F R FG D+ L Sbjct: 311 SFVRMELFDKLYMFIAPVLFGGDGLSAFAPIGITLPEQAIRLDFEPPSR--FGRDLLL 366 >gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Methylophilales bacterium HTCC2181] gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Methylophilales bacterium HTCC2181] Length = 363 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 110/357 (30%), Positives = 177/357 (49%), Gaps = 13/357 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 FM+ A+ ++ +G T NP V + VKD +VIG G A G HAEV AL+EAG Sbjct: 4 DLHTEFMALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+G+T Y+TLEPC H G++PPC I+ G+ +VVV DP+ V+G+GL L GI Sbjct: 64 AGAKGSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V+ ++ + + + +R + ++ KIA S D +A S IT S+ V Sbjct: 124 EVVEDVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 RA++ AIL G+GT+ D+P L R + P R+I D H + +++I+K Sbjct: 184 QQWRARACAILTGVGTIHKDNPRLNVRNLDESD-QPFRVIADTHLSIDPEAQILKQKN-- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +I++ ND A + + +I + DL+ L+ L +LVE G + Sbjct: 241 -IILMFCNDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLN 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCL 352 + LVD +I+Y++ I++G P + + + FG D+ + Sbjct: 300 GQLLELGLVDELIIYQAPIIMGGNANPLFHHPIMTSMEQKIRLKQIDIRQFGEDLRM 356 >gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Photorhabdus luminescens subsp. laumondii TTO1] Length = 369 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 125/372 (33%), Positives = 185/372 (49%), Gaps = 26/372 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M+ AL +R TS NP+V C+IV DG ++G G G PHAEV AL+ AG Sbjct: 2 NNDKKYMARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++A+GAT YVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 DKAKGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M E + +L R +I LK+A S D +A S IT ++ V Sbjct: 122 AVEHGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPHFKLSL 232 RAQ AIL TVLADDP LT R + L P+R+I+D ++S Sbjct: 182 QKFRAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSP 241 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVT 288 ++I+ + T+ D+ L+ +N+ I DL L+ L R + Sbjct: 242 QHQVIQQPGYC-WLARTKVDEHDLS-----ENVEQILLPAHGIGVDLVSLMMQLGKRQIN 295 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRD 344 ++ E GA +A + + LVD ++LY + V+G+ L+ F Sbjct: 296 TVWTECGALLAGALLTLGLVDELVLYVAPKVLGDTARGLFTIPELKNLAEAPEFDIFDVQ 355 Query: 345 YFGSDVCLEYIG 356 G D+ L Sbjct: 356 QVGPDLRLHLRP 367 >gi|15834728|ref|NP_296487.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] gi|7190138|gb|AAF38983.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] Length = 396 Score = 327 bits (839), Expect = 1e-87, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 11/369 (2%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M VSS FM A+ NP V C+IVK+G +IGRG G PHAEV A Sbjct: 26 MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 85 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ GA YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L Sbjct: 86 FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 145 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + + E K L YL ++ + +K A S D S I+G Sbjct: 146 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 205 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKI 236 ++ V LRA+S A++VG TV D+P L+ R+ L E P+R+++D + LD+++ Sbjct: 206 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 265 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEG 294 ++ TE + + + DLK+LL L +G +LVEG Sbjct: 266 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 325 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY---FGSDV- 350 GA + +F LV++ ++Y +G+ G P + N V+ G V Sbjct: 326 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 385 Query: 351 -CLEYIGKN 358 C E +G+ Sbjct: 386 TCFECVGRE 394 >gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 365 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 15/362 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D FM+ ALR + + T+ NP V C+IV DG V+G G G HAEV AL+ Sbjct: 2 FSAADHDFMARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHALQA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSH+GR+PPC + ++ G+ RVV + DP+ +V+G GL L Sbjct: 62 AGEKAAGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ +E ++ R R + LK+A S D + S +TG ++ Sbjct: 122 GVRAECGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQ 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKIIK 238 H RA++ AIL GIGTV DDP+L R + P+++++D +LS D+++++ Sbjct: 182 DGHRWRARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLR 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294 V++ D A ++ ++ DL LL L RG+ + E Sbjct: 242 DGQ---VLVAAALVDRAKVDALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEA 298 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 G A+ S +++ LVD ++LY + ++G+ PL + G D+ Sbjct: 299 GFALGGSLLDAGLVDELLLYLAPCLVGDAARGMFDLPPLASLAGRRRLSIRDLRSVGPDL 358 Query: 351 CL 352 L Sbjct: 359 RL 360 >gi|206890490|ref|YP_002249110.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742428|gb|ACI21485.1| riboflavin biosynthesis protein RibD [Thermodesulfovibrio yellowstonii DSM 11347] Length = 370 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 121/347 (34%), Positives = 185/347 (53%), Gaps = 15/347 (4%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY- 82 TS NP V +IVK+G +I G G PHAE +A+ A E +GAT YVTLEPC H Sbjct: 25 RTSPNPMVGAVIVKNGKIISEGYHKKAGLPHAEAEAIRNANESLKGATLYVTLEPCCHKD 84 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAY 141 ++PPC II GI RVV+ + DP+ +VSG+G++ L+ GI +++ ++E E K Y Sbjct: 85 KKTPPCTDAIINSGINRVVIGMRDPNPKVSGKGVEILNNHGIKVIEGVLEEEVKKLNEFY 144 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + R + LKIA++ D I S IT S+ VHL+R++ DA+L GTVL Sbjct: 145 IKYITTSRPFVILKIAMTLDGKIATPLGESKWITSEKSRKFVHLIRSRVDALLSAYGTVL 204 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLAL 258 D+P T R+ G +P+R+I+DP K+ L+ + + +V E ND + L Sbjct: 205 KDNPMFTSRIKG--GKNPLRVIIDPELKIPLNYHVYNPPPN-TIAVVHEKKLNDKNIKHL 261 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 R I + DL+ L+ L R +TSL++EGG+++ + S +VD ++++ + Sbjct: 262 IHRGIEIVSFSSEKVDLQWLMEELGKRQITSLMIEGGSSLNSYALWSGIVDKLMIFIAPK 321 Query: 319 VIGEGGIPSPLEEGYLEKNF------MCVRRDYFGSDVCLEYIGKNL 359 +IG G P G + KN ++ FG D+ +E K L Sbjct: 322 IIG-GAQSYPSIGGNIYKNLDEAFEIKDLKIRMFGGDIFIEGYLKGL 367 >gi|145219912|ref|YP_001130621.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Prosthecochloris vibrioformis DSM 265] gi|145206076|gb|ABP37119.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlorobium phaeovibrioides DSM 265] Length = 357 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 179/354 (50%), Gaps = 13/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA--R 68 M L +R G S NP V +IV DG V+G G G PHAEV A+ G+ A R Sbjct: 1 MVRCLELARQGAGAVSPNPMVGSVIVCDGEVVGEGYHEAFGGPHAEVNAIASVGDGAVLR 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YV LEPCSH+G++PPCA IIE GIRRVV+ DP+ +V+GRG+ L G+ +++ Sbjct: 61 RSTLYVNLEPCSHHGKTPPCADLIIEKGIRRVVIGCGDPNPQVAGRGVAKLRSAGVEVLE 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E K A++T E R + LK+A + D I A S ITG ++ +VH LR Sbjct: 121 GVLEAESKRLNEAFMTSHAEGRPFVALKLAETLDGRIATADGQSKWITGDAARLEVHRLR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA+L G T+ AD LT R +P+R++LDP LS D+ + + Sbjct: 181 CSYDAVLSGAATIRADGSRLTVR--HCAGRNPLRVVLDPSLSLSPDAPVFGDEAKTLLFA 238 Query: 248 VTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + AL + + +++ + DL+ +L L R V S+LVE G ++ S Sbjct: 239 SQSMEGSPSALRYAAIGVEMVFVEEGTGGLDLRAVLDELHRRQVLSVLVESGGRLSASLA 298 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLE 353 RL+D + ++ + + G + S G + F G DV LE Sbjct: 299 RERLLDKLYMFIAPKLFGGDALASFAPLGVSSPDEAPAFRFEPPRLVGEDVLLE 352 >gi|229528728|ref|ZP_04418118.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae 12129(1)] gi|229332502|gb|EEN97988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae 12129(1)] Length = 367 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 179/374 (47%), Gaps = 27/374 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L + + +T +PV+ V + + A K V Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNV 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343 + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 NQVWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350 Query: 344 DYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 RMVGADLRIIATPK 364 >gi|88607630|ref|YP_504671.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ] gi|88598693|gb|ABD44163.1| riboflavin biosynthesis protein RibD [Anaplasma phagocytophilum HZ] Length = 364 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 137/366 (37%), Positives = 196/366 (53%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM+ AL +R +G NP+V C++++DG+V+GRG T GG PHAE+ AL+ AG Sbjct: 4 DERFMAMALTLARRGLGNVYPNPAVGCVVIRDGVVVGRGWTVAGGRPHAEIVALQNAGNR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC H G + PC +I G+ RVV+ V DPD RVSG+G+ L GI + Sbjct: 64 AIGATVYVTLEPCCHDGVTGPCTSALINAGVSRVVIGVQDPDYRVSGKGISSLEAAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + + + +V R IT K+A + D I IT +++ VH Sbjct: 124 KYGVLQQQAEALNAGFFYSKVLHRPLITAKLATTLDGKISFDEGCDRWITNDLTRKWVHK 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA DAILVG TV+ADDP L CRL GL++HSP+R+++D KL KI+ TA P Sbjct: 184 QRAMYDAILVGSNTVVADDPMLDCRLPGLEKHSPIRVVVDRSGKLLAHHKIVCTAGTIPT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTIL-VGRGVTSLLVEGGAAVAHSF 302 IVT+ND +N+ I D L+ ++ L G+T L VEGG + Sbjct: 244 YIVTDND-----PQCVFENVKYIKVDGGTEFLENMVRALTAQLGITRLFVEGGGILITEL 298 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLE-EGYLEKNFMCVRRD---YFGS-----DVCLE 353 + +L+D I R+ + G G+ S + + + V+ D +F DV Sbjct: 299 LKKKLIDRFIWTRANKISGSKGLNSITDIDAQFGQCCKFVKTDTLSFFDDTVDLFDVKYT 358 Query: 354 YIGKNL 359 +G NL Sbjct: 359 QLGSNL 364 >gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas vesicatoria ATCC 35937] gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas vesicatoria ATCC 35937] Length = 364 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 192/362 (53%), Gaps = 8/362 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+++D R+M+ ALR + T NP V C+IV+DG+ +G G G PHAEV AL Sbjct: 1 MNVTAYDHRWMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V+G G L Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V +++++ + +L+R R + +K+ S D +A S ITG + Sbjct: 121 EAGIEVVSGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238 + V RA++ AIL G GTVLADDP +T RL P+R++LD + I + Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLRTLECEHIRQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + + N PV +L + ++ DL +L +L RG+ + E GA + Sbjct: 241 GD--APTLYLHGNAVPVPSLQNAEFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGATL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEY 354 + + + + LVD +++Y + +V+G+ P G + G D+ L Y Sbjct: 299 SGALLQAGLVDELLVYFAPVVLGDAARPLLAGLGIDTMAQRRTLHLADVRQLGQDLRLRY 358 Query: 355 IG 356 + Sbjct: 359 LP 360 >gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma proteobacterium HTCC2143] gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma proteobacterium HTCC2143] Length = 370 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 116/361 (32%), Positives = 183/361 (50%), Gaps = 21/361 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA +M A+ + + S NP V C+IV++G +IGRG G HAEV A+ +AG Sbjct: 3 DADYMQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAGN- 61 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AT YVTLEPCSH GR+PPC+ +I + RVVV + DP+ V+G G+ L Q GI+V Sbjct: 62 VEDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVV 121 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ S+ + Y+ R + +K+A+S D MA S ITG +++ V Sbjct: 122 ELGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQ 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSK 235 LRA+S ++ G+ T++ADD LT R + L E P+R++LD + +L +K Sbjct: 182 LRARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAK 241 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLL 291 I+ +II+T ++ V A +++C + DL +L L V +L Sbjct: 242 ILSQP--GRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEIL 299 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348 VE GA ++ + + LVD +Y + ++G P PL ++ + G Sbjct: 300 VEAGATLSGALAEAGLVDHYTVYMAPTLLGNTARPLLQLPLATMAEQQRLQIDSIEPIGE 359 Query: 349 D 349 D Sbjct: 360 D 360 >gi|94264512|ref|ZP_01288299.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] gi|93455071|gb|EAT05298.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] Length = 374 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 189/372 (50%), Gaps = 22/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GAT YVTLEPC+H GR+PPC++ II GIRRVV + DP V+ G + L Sbjct: 61 AGEAAAGATIYVTLEPCNHLGRTPPCSEAIIAAGIRRVVYGLADPH-EVARGGAKRLESA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++ E + ++ R R + LK AVS D I A S ITG ++ Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSK-IIKT 239 H LR QSDAILVG GTVLADDP LT RL G + P+R++LD + ++ +I+ Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLIQQ 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--------------CDCRDLKKLLTILVGR 285 + A I A A ++ C DL ++L L Sbjct: 240 SPAATWIFCAPEAATERATALEAAGARVVRLEPTPGGQSGPEPNCSGLDLWQVLRELAAN 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341 GV LLVEGG V SF+ L D + + ++IG G+P +PL ++K V Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359 Query: 342 RRDYFGSDVCLE 353 G D+ L Sbjct: 360 SSRRLGDDIMLR 371 >gi|306841987|ref|ZP_07474661.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2] gi|306843711|ref|ZP_07476311.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1] gi|306276021|gb|EFM57730.1| riboflavin biosynthesis protein RibD [Brucella sp. BO1] gi|306287915|gb|EFM59332.1| riboflavin biosynthesis protein RibD [Brucella sp. BO2] Length = 373 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 230/358 (64%), Gaps = 7/358 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM A +R++R H GLT TNPSV +IVKDG+++GRGVTA GG PHAE QAL EAGE Sbjct: 15 DLRFMEATIRYARRHKGLTGTNPSVGTIIVKDGVIVGRGVTALGGRPHAEPQALAEAGEA 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPC+H+GR+PPCAQ ++ G+ RVVV DPD RVSG+G L + GI + Sbjct: 75 ARGATAYVTLEPCAHHGRTPPCAQALVRAGVTRVVVAATDPDERVSGKGFAILREAGIEV 134 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ + L YL R +KR + LK+A+S D MIG G G V ITG +S+ Q H+ Sbjct: 135 VPGILPEQAADDLAGYLNRSAKKRPEVILKLALSADGMIGRKGAGQVAITGPVSRAQSHI 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ+D IL+GI T LADDP L CRL GL+ SP+R++LD +L L S+++++A P+ Sbjct: 195 LRAQADIILIGIETALADDPVLNCRLPGLESRSPVRVVLDGGLRLPLSSRLVRSADTQPL 254 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 + E A + I+ + D L +LL L +G+ S+LVEGGA VA Sbjct: 255 WVACREEASDERRAALGAASCRILATETHDGRIALPELLDDLAAQGIASVLVEGGAGVAK 314 Query: 301 SFINSRLVDSIILYRSQIVIG-EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF++ +LVD ++++RS +VIG G+ E ++ F +R+ + D C EY+ Sbjct: 315 SFLDEKLVDRLVIFRSPLVIGAADGVAVEELETHIASEFKILRQVRYADDACAEYVRN 372 >gi|254507822|ref|ZP_05119952.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16] gi|219549195|gb|EED26190.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus 16] Length = 368 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 179/370 (48%), Gaps = 29/370 (7%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP + D MS A+ ++ + T+ NP+V C+I ++G ++G G G PHAEV A Sbjct: 1 MPQFTETDFNMMSRAIWLAKGGIYTTAPNPNVGCVITQNGDIVGEGFHYRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AG+++ GATAYVTLEPCSHYGR+PPCA+ +I+ + +V+ + DP+ +V+GRG+Q L Sbjct: 61 LRMAGDKSVGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E + +++ R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEQDAIALNPSFIKRMQTGLPFVQLKMAASLDGQTALANGKSQWITSEA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQS AIL TV+ D+ L+ R + L E P+R+ILD Sbjct: 181 ARRDVQRYRAQSGAILSTSKTVIEDNASLSVRWSDLPESVKAQYSESQLRQPVRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRG 286 +L+ + K+ + +IV D + L ++ L+ L Sbjct: 241 NQLTSELKLFQAGGE--TLIVGPEGDVEMTLNADQQ---------ISLQDTFATLASAHN 289 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVR 342 + + VE GA +A S + LVD +++Y + ++G G G + Sbjct: 290 INHIWVEAGATLASSLLQQDLVDELVIYLAPKIMGSDGRGLLGALGLESMSDVIDLDIKD 349 Query: 343 RDYFGSDVCL 352 G D+ + Sbjct: 350 VRQVGKDIRI 359 >gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046] gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046] Length = 367 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 120/360 (33%), Positives = 188/360 (52%), Gaps = 19/360 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ + T NP+V C+IVKDG+++G G G HAEV A+ EAGE+ Sbjct: 12 DQAWMKQAIALALQGQYSTKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREAGEQ 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +GATAYVTLEPC+HYGR+PPCA+ ++E G+ RVV+ DP+ V+G+G+Q L + GI V Sbjct: 72 TQGATAYVTLEPCAHYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEV 131 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + ++E +L ++ LK+A S D MA S ITG ++ V Sbjct: 132 DVGICQTEAHQLNAGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQH 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCR-----LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 RA S ++ GI TVLADDP+L R + P R++LD +L L ++I++ Sbjct: 192 FRAISGVVITGIETVLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQILQQP 251 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVA 299 ++V LA ++ ++ + L +LL LV + ++VE GA ++ Sbjct: 252 D---TVMVMGPYRQALA------DVGVLQFAVQPLDQLLKQLVQSHQIYDVMVEAGATLS 302 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +F+ +LVD +I Y + ++G+ + + + F + G DV L I Sbjct: 303 TAFLQEKLVDEMISYVAPTLLGQSARAMFNAEFSQMAEQLRFKLMDVTQLGDDVRLTLIP 362 >gi|124026389|ref|YP_001015504.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL1A] gi|123961457|gb|ABM76240.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL1A] Length = 350 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 173/352 (49%), Gaps = 10/352 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M +++ + G TS NP V +++ +G ++G G G PHAE++AL +AG+++ Sbjct: 1 MRRSIQLALLAEGRTSPNPLVGSVVLDSNGRLVGEGFHTGAGNPHAEIEALAQAGKKSLD 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T VTLEPC H G +PPC + II+ G+++VVV + DPD RVSG G+ L G+ +++ Sbjct: 61 GTIVVTLEPCCHQGLTPPCTEAIIKAGLKKVVVGMVDPDPRVSGNGISRLKDSGLEVIEG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + + R R LK A+S D IG+ S IT +++ VH +R+ Sbjct: 121 VLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWITDIPARDSVHRIRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++VG GTV AD+P LT R G + P+R++ L +K+ T + ++ Sbjct: 181 KCDAVIVGGGTVRADNPLLTSR--GKSDFEPLRVVFSRTLNLPQSAKLWDTKIARTLVAY 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 D + + + +LL+ L +G +L E G +A S I + V Sbjct: 239 GPEGDESFFSDLLD-GPEKLRLNSDNPSELLSSLAKKGCNKILWECGPQLATSAIEANCV 297 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 ++++ + ++G SPL E D G D+C I Sbjct: 298 QELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGEDICWRLI 349 >gi|73666745|ref|YP_302761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ehrlichia canis str. Jake] gi|72393886|gb|AAZ68163.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ehrlichia canis str. Jake] Length = 361 Score = 326 bits (837), Expect = 2e-87, Method: Composition-based stats. Identities = 137/355 (38%), Positives = 201/355 (56%), Gaps = 9/355 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +FMS ALR +R +G NP+V C++V GI++GRG T GG PHAEV AL Sbjct: 1 MMHDDKKFMSLALRIARRGLGNVFPNPAVGCIVVNRGIIVGRGWTQVGGRPHAEVVALNN 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GAT YVTLEPCSHYG++ PCA +I+ GI+R+V+ DPDVRVSG G++ L Sbjct: 61 AGYLAKGATVYVTLEPCSHYGKTGPCALKLIDAGIKRMVIAARDPDVRVSGNGIKLLRDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 I + +M E + + +++ R IT+K+A + D I ++ S IT +++N Sbjct: 121 NIDVKCDLMYKEAQELNVGFFFTKIKGRPFITVKLASTLDGKIALSNGNSKWITNQLTRN 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R+ DA++VG TV+ DDP L R+ GL+ +SP+RI++D K+ I+KTA Sbjct: 181 WVHKQRSMYDAVMVGSNTVVHDDPMLNTRIPGLECYSPVRIVIDRFGKICTYHNIVKTAD 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAH 300 + P I+T DD + K + + D LK + ++ + G+T L VEGG+ + Sbjct: 241 IIPTYILT--DDTSKTKLGKAKYLIVTGTDNF-LKNAMKVISMKIGITRLFVEGGSILIT 297 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVC 351 + S+LVD II RS + G + S + L NF + YF DV Sbjct: 298 ELLKSQLVDRIIWCRSNKIFGANAVSSVGDLNILTLQNLYNFRKIDTLYFDDDVV 352 >gi|166154072|ref|YP_001654190.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 434/Bu] gi|166154947|ref|YP_001653202.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|165930060|emb|CAP03543.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 434/Bu] gi|165930935|emb|CAP06497.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 375 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332 >gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 53993] gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrooxidans ATCC 53993] Length = 357 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 127/358 (35%), Positives = 185/358 (51%), Gaps = 12/358 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL + + NP V ++VKDG VIGRG G PHAEV AL+EAG ARGA Sbjct: 1 MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYVTLEPCSHYGR+PPCA +I GI RVV+ + DP+ V+GRG++ L G++ + Sbjct: 61 TAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAEEGC 120 Query: 131 -ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E+ + +L R R + LK A+S D + +A S +TG ++ V RA+ Sbjct: 121 LEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQERAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 + AILVGIGTVLAD+P L RL P+++I+D H + D+ + T V I Sbjct: 181 ASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGA--VWIFH 238 Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D PV A A + D ++++ +L R + +LVE G VA S Sbjct: 239 GQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLFA 298 Query: 305 SRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + L+D +LY + +++G P P + + ++ G+D+ + Sbjct: 299 AGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLRPQE 356 >gi|153828188|ref|ZP_01980855.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39] gi|229522216|ref|ZP_04411633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TM 11079-80] gi|148876277|gb|EDL74412.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 623-39] gi|229341141|gb|EEO06146.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae TM 11079-80] Length = 367 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 27/374 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L + + +T +PV+ V + + A K V Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNV 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343 + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 NQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350 Query: 344 DYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 RMVGADLRIIATPK 364 >gi|270284895|ref|ZP_06194289.1| riboflavin-specific deaminase [Chlamydia muridarum Nigg] gi|270288923|ref|ZP_06195225.1| riboflavin-specific deaminase [Chlamydia muridarum Weiss] gi|13633863|sp|Q9PLJ6|RIBD_CHLMU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase Length = 371 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 173/369 (46%), Gaps = 11/369 (2%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M VSS FM A+ NP V C+IVK+G +IGRG G PHAEV A Sbjct: 1 MEVSSEQQLFFMREAVALGERGRIFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ++ GA YVTLEPC H+GR+PPC +I+ + V + + DPD RV RG+ L Sbjct: 61 FQDQTSSLVGADVYVTLEPCCHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + + E K L YL ++ + +K A S D S I+G Sbjct: 121 KEAGISVYVGIGHEEAKASLQPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKI 236 ++ V LRA+S A++VG TV D+P L+ R+ L E P+R+++D + LD+++ Sbjct: 181 ARLDVGRLRAESQAVIVGSRTVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARV 240 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEG 294 ++ TE + + + DLK+LL L +G +LVEG Sbjct: 241 WNPDSGNVLLATTEQCSKEHIQKLEDRGVEVWKSSPQQVDLKRLLQYLAEKGCLQVLVEG 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY---FGSDV- 350 GA + +F LV++ ++Y +G+ G P + N V+ G V Sbjct: 301 GARLHSAFWREHLVNAGVIYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 360 Query: 351 -CLEYIGKN 358 C E +G+ Sbjct: 361 TCFECVGRE 369 >gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis EO147] Length = 369 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 177/357 (49%), Gaps = 19/357 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI + Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L + Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLSARLLEGGSL---L 236 Query: 247 IVTENDDP---VLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I DP A A R + I+ DL +L +L RG+ L VE G + Sbjct: 237 IFCGALDPQSEARADALRARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLN 296 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 S + R VD +++Y + ++G + + G D+ + Sbjct: 297 GSLLRERCVDELLVYLAPSLLGADAAAMFEVAAPASLADRTRLAFHSVERVGDDLRI 353 >gi|126696788|ref|YP_001091674.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9301] gi|126543831|gb|ABO18073.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9301] Length = 364 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 173/357 (48%), Gaps = 9/357 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + TS NP V +I+ K+G +I G G PHAE A +A Sbjct: 10 KWMKRAIFLASLGKNTTSPNPRVGAVILDKNGSLISEGFHFKAGMPHAEAMAFNNLKNDA 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++ L + GI + Sbjct: 70 KGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISMEDPDERVSGKGIKLLKEAGIQVN 129 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E A++ R K++ LK A+S D I + S IT S++ VH Sbjct: 130 LGLCKKESLDLNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNDESRSLVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI++G T+ D+P LT R G + P+R++ L S + + ++ Sbjct: 190 RAEFDAIIIGGNTLRRDNPFLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCSKAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L+ K + + + + + IL RG +L E G +A + I S Sbjct: 248 IYDSSTANESYLSRIPKCVEVEKVLSDNPELISKILAKRGCNKVLWECGPNLATAAIQSN 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIGKN 358 + II + + ++G P + E+ ++ G+D+C++ + KN Sbjct: 308 CIQEIITFIAPKILGGENSMHPFGDFEFEEMHEVIKLSNSQVSLIGNDICVKSLCKN 364 >gi|149001717|ref|ZP_01826690.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] gi|147760175|gb|EDK67164.1| Holliday junction DNA helicase motor protein [Streptococcus pneumoniae SP14-BS69] Length = 341 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 173/344 (50%), Gaps = 13/344 (3%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89 V +IVKD +IG+G + G PHAE AL+ E GAT YVTLEPC H+G++PPC Sbjct: 1 MVGAVIVKDNHIIGQGYHEFFGGPHAERNALKNCRESPVGATLYVTLEPCCHFGKTPPCI 60 Query: 90 QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEK 148 II+ GI RVV+ D + VSG+G++ L + + + ++E+E + ++ + Sbjct: 61 DAIIDSGITRVVIGSLDCNPIVSGKGVKILEENNLQVTVGILENECLNLIKSFRKYITQH 120 Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 ++ +K A+S D I S IT ++ VH LR AI+VG+ TV+ DDP LT Sbjct: 121 VPYVFMKYAMSMDGKIATKTNQSKWITEEEARKHVHQLRHHVSAIMVGVNTVIQDDPLLT 180 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 CRL + +P+RII D H + L SKI+KTA I T ++D ++ I+ Sbjct: 181 CRLE--EGKNPIRIICDTHLRTPLTSKIVKTANDIKTYIATSSEDKNKMKLYQNHGCEIL 238 Query: 269 YCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + DL L+ L + SL++EGG+ + S + ++VD + +Y + + G Sbjct: 239 SIKKKGNHIDLSSLMQHLGNMQIDSLVLEGGSLMNWSALEQQIVDELKIYIAPKIFGGS- 297 Query: 325 IPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKNLCLQE 363 P+ + +R G+D +E C QE Sbjct: 298 AKFPVGGEGISLPNDAIRLKPYAFSQIGNDYLIESEVIYPCSQE 341 >gi|255349125|ref|ZP_05381132.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 70] gi|255503662|ref|ZP_05382052.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 70s] gi|255507341|ref|ZP_05382980.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis D(s)2923] gi|289525774|emb|CBJ15255.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis Sweden2] gi|296435349|gb|ADH17527.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis E/150] gi|296439066|gb|ADH21219.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis E/11023] Length = 375 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332 >gi|149909347|ref|ZP_01898003.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp. PE36] gi|149807664|gb|EDM67612.1| Putative pyrimidine deaminase/pyrimidine reductase [Moritella sp. PE36] Length = 440 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 116/395 (29%), Positives = 184/395 (46%), Gaps = 45/395 (11%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D M A+ ++ T+ NP+V C++VK VIG G G HAEV AL Sbjct: 40 FNDTDHLHMQRAIALAQKGRFTTAPNPNVGCVLVKADKVIGEGFHLRAGEAHAEVHALNS 99 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GAT YVTLEPCSHYGR+PPCA ++ + VV+ + DP+ +V+G+G+ L Sbjct: 100 AGDDAQGATCYVTLEPCSHYGRTPPCAAALVNANVHEVVIAMVDPNPQVAGKGIAILIAA 159 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ ++ ++ R E+R + LK+A S D + S ITG +++ Sbjct: 160 GIKVRVGLLSAQSHALNPGFILRMREQRPFVRLKMAASLDGRTALKNGESKWITGSAARS 219 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------------------QEHSP 219 V + RAQ+ AIL TV+ DD L R + L Q P Sbjct: 220 DVQVYRAQASAILSTASTVIMDDASLNVRYSELGTSQADYPLDYAEKSLIQAEQSQVRQP 279 Query: 220 MRIILDPHFKLSLDSK---------------IIKTALLAPVIIVTENDDPVLALAFRKKN 264 +R++LD H +L + ++ + V + T+N L + Sbjct: 280 IRVVLDNHRRLDAHLEPSAKELKLFAQPGQILLVNGVKNTVNVATKNSSTEQLLVNESVS 339 Query: 265 INIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 I D DL +L+T L + + L VE GA +A + + ++LVD II+Y + ++G Sbjct: 340 RIEIEQDSHHNIDLNQLMTTLAQQNINDLWVEAGATLAGALLENKLVDEIIIYLAPKLMG 399 Query: 322 EG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + S L E F G D+ + Sbjct: 400 DSARGLAVLSELTEMAQVPTFSFTDITQIGDDLRI 434 >gi|15642269|ref|NP_231902.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121586201|ref|ZP_01675992.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80] gi|153820478|ref|ZP_01973145.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457] gi|153823263|ref|ZP_01975930.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33] gi|227082395|ref|YP_002810946.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2] gi|229507656|ref|ZP_04397161.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae BX 330286] gi|229512149|ref|ZP_04401628.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae B33] gi|229519284|ref|ZP_04408727.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC9] gi|229607160|ref|YP_002877808.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae MJ-1236] gi|254849400|ref|ZP_05238750.1| riboflavin-specific deaminase [Vibrio cholerae MO10] gi|298500355|ref|ZP_07010160.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757] gi|9656833|gb|AAF95415.1| riboflavin-specific deaminase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121549613|gb|EAX59637.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 2740-80] gi|126508979|gb|EAZ71573.1| riboflavin biosynthesis protein RibD [Vibrio cholerae NCTC 8457] gi|126519224|gb|EAZ76447.1| riboflavin biosynthesis protein RibD [Vibrio cholerae B33] gi|227010283|gb|ACP06495.1| riboflavin biosynthesis protein RibD [Vibrio cholerae M66-2] gi|229343973|gb|EEO08948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC9] gi|229352114|gb|EEO17055.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae B33] gi|229355161|gb|EEO20082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae BX 330286] gi|229369815|gb|ACQ60238.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae MJ-1236] gi|254845105|gb|EET23519.1| riboflavin-specific deaminase [Vibrio cholerae MO10] gi|297541048|gb|EFH77102.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MAK 757] Length = 367 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 179/374 (47%), Gaps = 27/374 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ ++ +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L + + +T +PV+ V + + A K V Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343 L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 NQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350 Query: 344 DYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 RMVGADLRIIATPK 364 >gi|253990958|ref|YP_003042314.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica] Length = 362 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 177/363 (48%), Gaps = 20/363 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R TS NP+V C+IV+DG ++G G G PHAEV AL AG++A+G+ Sbjct: 1 MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMAGDKAKGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+G++PPCA +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVEHGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M +E + +L R +I LK+A S D +A S IT S+ V LRAQ Sbjct: 121 MMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKLRAQ 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 AIL TVLADDP LT R + L P+R+I+D ++ + Sbjct: 181 CSAILSSSNTVLADDPYLTVRWSELDAETQAVYPEENLRQPVRVIVDSQNRVVQQHQ--V 238 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + D ++ + + DL L+ L R + ++ VE G + Sbjct: 239 IQQPGHCWLARTKADGDNWPENVEQILLPAHGVGVDLVLLMMQLGKRQINTVWVECGPLL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A + + LVD ++LY + V+G+ IP L+ F G D+ L Sbjct: 299 AGALLTLGLVDELVLYVAPKVLGDTACGLFTIPE-LKSLVKAPEFDIFDIQQIGPDLRLR 357 Query: 354 YIG 356 Sbjct: 358 LRP 360 >gi|219668833|ref|YP_002459268.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense DCB-2] gi|219539093|gb|ACL20832.1| riboflavin biosynthesis protein RibD [Desulfitobacterium hafniense DCB-2] Length = 365 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 129/351 (36%), Positives = 188/351 (53%), Gaps = 9/351 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +MS AL + +G TS NP V C+IVKDG ++G G G PHAEV AL+ AG Sbjct: 2 ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGAIVGEGYHQKAGTPHAEVHALQAAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ V G+G+ L GI Sbjct: 62 EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVGGQGITRLRAAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E E + +L + K A++ D I S +T S+ V Sbjct: 122 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVTNEASRAYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR D I+VG TV D+P L CR++ + P+R+I+D ++ L + ++ ++ A Sbjct: 182 HRLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLIVDGTLQIPLQAAVLASSCTA 239 Query: 244 PVIIVTENDDPVLALAFRK--KNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAV 298 P +I T P+ L + +N+ + D LK LL LV RG S+L+EGG + Sbjct: 240 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 299 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 A S + +L+D + + +IG G PSPL L + ++ D Sbjct: 300 AGSLLREQLIDEVEFIYAPKLIGGKG-PSPLTGLELPLMAQAIPLEFLEID 349 >gi|123968996|ref|YP_001009854.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. AS9601] gi|123199106|gb|ABM70747.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. AS9601] Length = 364 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 170/357 (47%), Gaps = 9/357 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + TS NP V +I+ K+G +I G G PHAE A ++ Sbjct: 10 KWMKRAIFLASLGKNTTSPNPRVGAVIIDKNGKLIAEGFHYKAGMPHAEAMAFNNLKKDP 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G + YV LEPC H GR+PPC +I GI++ + ++DPD RV+G+G++ L + GI V Sbjct: 70 KGGSIYVNLEPCCHQGRTPPCVDKVISSGIKKAYISIEDPDARVAGKGIKLLEEAGIQVH 129 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E +A++ R + ++ K A+S D I + S IT S+ VH Sbjct: 130 LGLCKKESLDLNNAFIHRNITNKAFGVFKWAMSIDGRIALKNGKSKWITNEESRALVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ DAI++G T+ D+P LT R GL+ P+R++ L S + ++ Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GLKNPEPLRVVFTKSLDLPTKSNLWDCNKAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L K++ I + + + IL RG +L E G +A + I S Sbjct: 248 IYDSSTANESYLNRIPKSVEIEKVSSDNPELISKILAKRGCNKVLWECGPRLATAAIKSN 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIGKN 358 + II + + ++G +PL + + ++ G D+C++ KN Sbjct: 308 CIQEIITFIAPKILGGENSMNPLGDFEFGEMHEIIKLSESQHSLIGDDICVKGSLKN 364 >gi|15888505|ref|NP_354186.1| bifunctional riboflavin deaminase-reductase [Agrobacterium tumefaciens str. C58] gi|15156207|gb|AAK86971.1| bifunctional riboflavin deaminase-reductase [Agrobacterium tumefaciens str. C58] Length = 414 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 181/413 (43%), Positives = 234/413 (56%), Gaps = 56/413 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +FM+ A+ S H G T TNPSV C++VKDG +I VTA GG PHAE QAL Sbjct: 1 MTSRADDEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E AGE ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L Sbjct: 61 EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI+V+ ++ EGK L YLTRQ++KR H+ LK+AVS D MIG G G V ITG S Sbjct: 121 DAGIVVETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAES 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA+ D ILVGI T +ADDPELT R+ G++ SP+RI+LD F+L L SK++++ Sbjct: 181 RRVVHELRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRS 240 Query: 240 ALLAPVIIVTENDDPV-----------LALAFRKKNINIIYCDCRD-------------- 274 A PVI+ + AL+ R + + D Sbjct: 241 AREVPVIVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEG 300 Query: 275 ------------------------------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 L+ LL IL G++ LLVEGGA A SF+ Sbjct: 301 EMPGRAEGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLE 360 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + LVD I+L+ S +VIGEGGI +PL + ++ V +G D C +Y Sbjct: 361 AGLVDRIMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDYERP 413 >gi|72382670|ref|YP_292025.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL2A] gi|72002520|gb|AAZ58322.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. NATL2A] Length = 364 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 107/366 (29%), Positives = 178/366 (48%), Gaps = 14/366 (3%) Query: 1 MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55 M + D + +M +++ + G TS NP V +++ +G ++G G + G PHA Sbjct: 1 MINLAEDQKIWVPWMRRSIQLALLAEGRTSPNPLVGSIVLDSNGRLVGEGFHSGAGNPHA 60 Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E++AL +AG++A T VTLEPC H G +PPC + II G+++VVV + DPD RVSG G Sbjct: 61 EIEALAQAGKKALDGTIVVTLEPCCHQGLTPPCTEAIIRAGLKKVVVGMVDPDPRVSGNG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + L G+ +++ ++ E + + R R LK A+S D IG+ S I Sbjct: 121 ISRLKDSGLEVIEGVLSQECESINREFSFRVRHGRPWGILKWAMSLDGKIGLPNGCSKWI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T +++ VH +R++ DA++VG GTV AD+P LT R + P+R++ L + Sbjct: 181 TDIPARHSVHRIRSKCDAVIVGGGTVRADNPLLTSR--EKLDFEPLRVVFSKTLNLPQSA 238 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K+ T + +I D + + + + +LL+ L +G +L E Sbjct: 239 KLWDTKIARTIIAYGPEGDESF-FSDLPNGPEKLRLNSNNPSELLSSLAKKGCNKILWEC 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 G +A S I + V ++++ + ++G SPL E D G D Sbjct: 298 GPQLATSAIEANCVQELVVFVAPKLLGGMSSMSPLNNFGFESISSSYKLQHSFLDRKGED 357 Query: 350 VCLEYI 355 +C I Sbjct: 358 ICWRLI 363 >gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas gardneri ATCC 19865] gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas gardneri ATCC 19865] Length = 364 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 191/362 (52%), Gaps = 8/362 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D R M+ ALR + T NP V C+IV+DG+ +G G G HAEV AL Sbjct: 1 MSATADDHRCMAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGATAYVTLEPC+HYGR+PPCA +IE G+RRVV + DP +V+G G L Sbjct: 61 RAAGALARGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI ++ +M+++ ++ +L+R R + +K+ S D +A S ITG + Sbjct: 121 EAGIEVLSGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKIIK 238 + V RA++ AIL G GTVLADDP +T RL P+R++LD + I + Sbjct: 181 RADVQRWRARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLRTLACENIRQ 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP + V +D +L + ++ DL +L L RG+ + VE GA + Sbjct: 241 GN--APTLYVHGDDVLPRSLDVAQFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + +++ LVD +++Y + +++G+ P +E + G D+ L Y Sbjct: 299 SGALLHAGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRHPLQLLDVRQLGQDLRLRY 358 Query: 355 IG 356 + Sbjct: 359 VP 360 >gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51] gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51] Length = 376 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 190/366 (51%), Gaps = 20/366 (5%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 1 MPSQAAILDAHYMARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+GRGL+ Sbjct: 61 ALRQAGERARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E+E + +L R ++ K+A+S D MA S ITG Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA+S +L +VLAD+ +T R + L P+R+++D Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGR 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +L LD+ + P ++VT DDP A A + DL LL L RG Sbjct: 241 LRLPLDAPFFQ---AGPALVVTAVADDPGYAAAGHELLCLPGDNGQVDLAALLHALGARG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343 V +L+E GA++ +F LVD L+ + +G P P+E Sbjct: 298 VNEVLLEAGASLVGAFARLGLVDEYQLFVAGTFLGSHARPLLDWPMERMSEAPRLKITEM 357 Query: 344 DYFGSD 349 G D Sbjct: 358 RAVGDD 363 >gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Limnobacter sp. MED105] gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase, C-terminal [Limnobacter sp. MED105] Length = 377 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 18/374 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M AL + T+ NP V C+ V+DG+ I G A G HAEVQA+ Sbjct: 3 TFSPTDEHWMQHALNLAWKGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIA 62 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ G G+TAYVTLEPC+H+GR+ PCA+ ++ G+ RVV V DP+ VSG+G+ Sbjct: 63 DSRARGVSLAGSTAYVTLEPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAI 122 Query: 119 LSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + E + + +R +R + LK+A S D + + S ITG Sbjct: 123 LQAAGIETAHGVLIEQARWINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGE 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ H LRAQ+ A+L GIGTV AD+P+L R E P+++I+D ++S D++++ Sbjct: 183 AARLHGHHLRAQACAVLSGIGTVKADNPQLNVR-GIDTERQPLKVIVDSKLEISPDARLL 241 Query: 238 K--------TALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGV 287 + T P + T N + AL + + DL +LL L RG+ Sbjct: 242 QSGRVLIAHTEPHRPGWLTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQRGI 301 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRD 344 L +E G + SF+ + LVD I+ Y + +G G L E ++ + Sbjct: 302 NELHLEAGFGLNGSFLQAGLVDEIVQYIAPRFLGPGQGLFRLPELEALPAYVSWAIQSFE 361 Query: 345 YFGSDVCLEYIGKN 358 G D+ + ++ N Sbjct: 362 QIGPDLRITWVQNN 375 >gi|301335276|ref|ZP_07223520.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis L2tet1] Length = 375 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 162/329 (49%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL LV RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLVERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332 >gi|237803160|ref|YP_002888354.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/Jali20/OT] gi|231274394|emb|CAX11189.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/Jali20/OT] Length = 375 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 111/363 (30%), Positives = 171/363 (47%), Gaps = 10/363 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMCVRRDYFGSD---VCL 352 + +F +LV++ ++Y +G+ G P L+ + + + D C Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQPMLRDLQLSLVTAEHVRITETSLVRDSVKTCF 363 Query: 353 EYI 355 EY+ Sbjct: 364 EYL 366 >gi|255003850|ref|ZP_05278651.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Virginia] Length = 360 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 138/353 (39%), Positives = 195/353 (55%), Gaps = 11/353 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64 D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AG Sbjct: 3 DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ Sbjct: 63 EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +++ + + + + ++R IT+K+A + D I + IT +++ V Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHS 301 P I T+NDD A R I C+ D L + L G+T L VEGG + Sbjct: 243 PTYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTE 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351 + LVD I R+ V GE G+ S L L +F V+ F D Sbjct: 299 LLKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 351 >gi|297748861|gb|ADI51407.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis D-EC] gi|297749741|gb|ADI52419.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis D-LC] Length = 400 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 29 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 88 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 89 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 148 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 149 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 208 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 209 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 268 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 269 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 328 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 329 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 357 >gi|229542331|ref|ZP_04431391.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1] gi|229326751|gb|EEN92426.1| riboflavin biosynthesis protein RibD [Bacillus coagulans 36D1] Length = 370 Score = 325 bits (833), Expect = 7e-87, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 182/354 (51%), Gaps = 12/354 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL + G TS NP V ++VK+G + G G HAE A+E+AG A Sbjct: 4 EDYMQLALHLAESVAGQTSPNPPVGSVVVKNGTIAGMAAHLKAGEKHAERLAVEQAGPLA 63 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GA +VTLEPC+HYG++PPCA F+IE GI+ V + DP+ V+G+G++ L Q G+ V+ Sbjct: 64 EGAEVFVTLEPCAHYGKTPPCADFLIEKGIKTVYIAALDPNPLVAGKGIEKLRQAGVKVE 123 Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E L + K +T+K A++ D I S IT ++ L Sbjct: 124 TGILKEQAEKLYRPFFHFIQTKTPFVTVKTAMTADGKIASETRDSKWITSEEARRDARRL 183 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ DAILVGI TVL D+P LT RL + +P+RI+LD H ++ ++K++ AP I Sbjct: 184 RSRHDAILVGIQTVLHDNPLLTTRLPHSR-KNPIRIVLDTHLRIPPEAKVLSGD--APTI 240 Query: 247 IVTENDDP-VLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I +D P ++ ++ ++ L + +L L +G+ +LLVEGGAAV SF+ Sbjct: 241 IFCGSDAPKEKEQCLKQLDVEVVRMPHARLLIRDVLAALGEKGIMTLLVEGGAAVNGSFL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 V I Y + VIG PSP K + + G D+ + Sbjct: 301 KEGAVQQYIFYIAPKVIGGKNAPSPFGGHGFGKVADALPLRFEKVEQIGPDLKI 354 >gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acinetobacter sp. ADP1] gi|49529501|emb|CAG67213.1| bifunctional protein [Includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase) ] [Acinetobacter sp. ADP1] Length = 362 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 123/366 (33%), Positives = 189/366 (51%), Gaps = 19/366 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +MS AL ++ T NP+V C+IVKD ++GRG TA G PHAEV AL Sbjct: 1 MSEQERDHYWMSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG +A+ ATAYVTLEPCSHYGR+PPCA +IE G+ RVV+ DP+ V+G+G L+ Sbjct: 61 REAGVQAQNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLN 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI ++E + + +L ++ LK+A S D MA S ITG + Sbjct: 121 QAGITTQVGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQE----HSPMRIILDPHFKLSLDS 234 + V RA+S AI+ G+ TVLADD +L R L + + P RIILD +L L + Sbjct: 181 RLDVQYWRARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTA 240 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVE 293 K+++ ++V ++ ++ L++LL + + +++E Sbjct: 241 KLLQ---HPETVVVMG------PFRQELADLGVVQFPVLPLQQLLEHIAKEHHIYDVMIE 291 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDV 350 GA ++ +F+ LVD +I Y + ++G + L++ + F + G D+ Sbjct: 292 AGATLSTAFLQEDLVDEVISYVAPTLLGCSARAMFNAELDKMAQQLRFELIDLTQLGQDI 351 Query: 351 CLEYIG 356 L + Sbjct: 352 RLRLVP 357 >gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1] gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas putida F1] Length = 376 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 1 MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ Sbjct: 61 ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E+E + +L R + K+A+S D MA S ITG Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA+S +L +VLAD+ +T R L +P+R+++D Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGR 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +L L + + P ++VT DDP A A + DL LL L RG Sbjct: 241 LRLPLAAPFFQ---AGPTLVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343 V +L+E GA + +F LVD L+ + +G P P+++ Sbjct: 298 VNEVLLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 357 Query: 344 DYFGSD 349 G D Sbjct: 358 RAVGDD 363 >gi|328543537|ref|YP_004303646.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [polymorphum gilvum SL003B-26A1] gi|326413281|gb|ADZ70344.1| Bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Polymorphum gilvum SL003B-26A1] Length = 388 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 158/368 (42%), Positives = 217/368 (58%), Gaps = 14/368 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60 D R+M+AA+ +R +G NPSV LIV D +V+GRGVT+ G PHAEV AL Sbjct: 20 DIDRRYMAAAVALARRGLGRVWPNPSVGALIVADTGGAPVVVGRGVTSPPGGPHAEVNAL 79 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+ ARGAT YVTLEPCSH+GR+PPC+ ++ G+RRVV+ + DP+ RVSGRG+ L Sbjct: 80 RQAGDRARGATCYVTLEPCSHHGRTPPCSAALVSAGVRRVVIGIADPNRRVSGRGIGMLR 139 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI V +E+ LH + R + +R +TLK+A+S D IG G G + ITG +S Sbjct: 140 DAGIAVTVGVEAVACRDLHLGHSLRVLAQRPAVTLKLALSADGFIGRLGAGQIAITGSLS 199 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 K H +RA+SD ILVG+GTVLADDP+LTCRL GL+ SP+R++LDP+ +L L S+++++ Sbjct: 200 KRFAHGIRARSDGILVGVGTVLADDPQLTCRLPGLEGRSPVRVVLDPNARLPLGSRLVRS 259 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 A PV V N DP A + + II D LT L RG+T ++VEG Sbjct: 260 AAEVPVWAVVANAADPDRLGALARAGVLIIRVPAGPEGIDPLVALTALSARGITRVMVEG 319 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDV 350 G+ VA +F+ + +VD L +G GG+ EG F V +G D Sbjct: 320 GSRVAAAFLRADMVDEAWLVHGPASLGAGGVLPFGAEGADALAGTGRFHVVETGIWGEDH 379 Query: 351 CLEYIGKN 358 + Y K Sbjct: 380 YVRYRRKE 387 >gi|55981033|ref|YP_144330.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Thermus thermophilus HB8] gi|55772446|dbj|BAD70887.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Thermus thermophilus HB8] Length = 377 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 109/377 (28%), Positives = 185/377 (49%), Gaps = 23/377 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL++ Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALQQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + V+ GL+ L Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENP-VAKGGLERLRAG 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E + + Q + + LK A++ D + + I+ S+ Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239 Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283 +++ + ++ V E A + ++ D ++ L L+ Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPGARVSALEEAGARVVALPREGGRVDPERALAFLL 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMC 340 GV +L+EGG +A +F+ LVD + L+ + ++GEG + +E Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRL 359 Query: 341 VRRDYFGSDVCLEYIGK 357 RR++ G ++ LE + Sbjct: 360 ARREWLGENLWLEAYPE 376 >gi|283779657|ref|YP_003370412.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068] gi|283438110|gb|ADB16552.1| riboflavin biosynthesis protein RibD [Pirellula staleyi DSM 6068] Length = 373 Score = 324 bits (832), Expect = 9e-87, Method: Composition-based stats. Identities = 123/361 (34%), Positives = 190/361 (52%), Gaps = 14/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D FM A+ + +GL NP V C+IV G V+GRG G PHAEV+AL++ Sbjct: 9 AASDEAFMREAIELAERGLGLVEPNPMVGCVIVSPRGEVVGRGWHGRFGGPHAEVEALQQ 68 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+ARG+T YVTLEPCSH+G++PPCA +I G+ RVV + DP +V G G L Sbjct: 69 AGEQARGSTLYVTLEPCSHFGKTPPCADAVIAAGVARVVAAMTDPFPKVQGGGFAKLRSA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E+E + YL + K A++ D I S I+ S+ Sbjct: 129 GIAVESGVCEAEARALCAPYLKLVTRGMPWVIAKWAMTLDGKIATRSGYSQWISCSQSRE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +R + D I+VG TV DDP LT R G + +P RI+LD +L +++++TA Sbjct: 189 LVHGIRGRVDGIMVGRRTVELDDPLLTARPPG--KRTPARIVLDSQARLQNSTQLVRTAR 246 Query: 242 LAPVIIVTE-NDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGA 296 +PV++VT D ++ L +LL+ L R +T++LVEGGA Sbjct: 247 QSPVLVVTGPEADDKEIRRLSMAGCEVLPFLAATHFERLLELLSELGRRQMTNILVEGGA 306 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 + S +++RLVD + ++ + + G P P+ +E+ ++ D G+D+ Sbjct: 307 KLLGSLLDARLVDEVHVFIAPKLFGGERAPGPVAGAGVEQVASALELRNLKIDQIGTDLY 366 Query: 352 L 352 + Sbjct: 367 V 367 >gi|46199007|ref|YP_004674.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Thermus thermophilus HB27] gi|46196631|gb|AAS81047.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Thermus thermophilus HB27] Length = 377 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 110/377 (29%), Positives = 184/377 (48%), Gaps = 23/377 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G TS NP V ++V++G ++G G G PHAEV AL E Sbjct: 1 MRDLDERFLRRALQLAERARGHTSPNPLVGAVLVREGRIVGEGFHPRAGEPHAEVFALRE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC H+GR+PPC+ +++ G+ RVVV + + V+ GL+ L Sbjct: 61 AGELARGATAYVTLEPCDHFGRTPPCSLALLQAGVSRVVVAAREENP-VAKGGLERLRVG 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E + + Q + + LK A++ D + + I+ S+ Sbjct: 120 GVQVEAGLLEAEARAQNEVFFAVQKKGLPFVLLKAALTLDGKVAAPSGDARWISSEASRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 180 VAHAYRQWLPAVMVGVGTVLKDDPALTVREPDFRPFPLMVEPPPLRDPLKVVLDTEARTP 239 Query: 232 LDSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILV 283 +++ + ++ V E A + ++ D ++ L L+ Sbjct: 240 PTARLFRKGPRGEPARVLVFVGEGAPRARVSALEEAGARVVALPREGGRVDPERALAFLL 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMC 340 GV +L+EGG +A +F+ LVD + L+ + ++GEG + +E Sbjct: 300 EEGVDGVLLEGGPRLAGAFLERGLVDKLALFLAPRILGEGRGLAEGFRVERVAEALRLRL 359 Query: 341 VRRDYFGSDVCLEYIGK 357 RR++ G ++ LE + Sbjct: 360 ARREWLGENLWLEAYPE 376 >gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens Pf-5] Length = 368 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 177/360 (49%), Gaps = 8/360 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D + M AL + T NP V C+I V+G G G PHAEV AL + Sbjct: 4 FSEVDFQHMQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFALRQ 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVT+EPCSH GR+ C Q +I+ G+ VVV DP +V+G+G+ L Sbjct: 64 AGGLARGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQLRNA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ES + +L+ +R + LK+ +S D + S IT ++ Sbjct: 124 GIEVRVGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTRARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA+S AIL G GTVLADDP LT R L+ + +P+R++LD ++ +++ Sbjct: 184 DVQYWRARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVFND- 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP + V + P+ + + L++LL L RG+ LLVE G +A Sbjct: 243 -QAPSLHVVHRECPLASSDSEQVMALPGDDQGLHLEQLLHNLSQRGLHDLLVEAGPTLAG 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + + + LVD ++LY + ++G+ P + +F G D+ L Sbjct: 302 NLLKAHLVDELLLYVAPRLLGDLARPLVHLPCFDRLEEALDFALYDVSQLGPDLRLRLRP 361 >gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Thiomonas sp. 3As] Length = 387 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 188/373 (50%), Gaps = 24/373 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA++ Sbjct: 7 SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G E RGATAYVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ Sbjct: 67 QAWERGHEVRGATAYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + E + +++R V + LK+A S D + + S IT Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSE 186 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ H RA++ A+L G+GTV ADDP+L R P+RI++D + +++ Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVVDSRLECPATVRLL 245 Query: 238 KTALLAPVIIVT----ENDDPVLALAFRKKNINIIYCD-----------CRDLKKLLTIL 282 ++A +P+ IV E P LA ++ D DL+ L+ +L Sbjct: 246 QSA-DSPLWIVHALPPEQAAPRLAALRSAATASLDLQDIALPVDPDKPGKTDLRALMQVL 304 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFM 339 RG+ L E G + S + + +VD +++Y + ++GEG P ++ Sbjct: 305 GQRGINELHCEAGEKLNGSLLRAGVVDELLMYLAPQLLGEGAGLAALGPYQQVNEGLALR 364 Query: 340 CVRRDYFGSDVCL 352 G+D+ + Sbjct: 365 WHDVQRIGADLRI 377 >gi|89894408|ref|YP_517895.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfitobacterium hafniense Y51] gi|89333856|dbj|BAE83451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfitobacterium hafniense Y51] Length = 372 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 191/351 (54%), Gaps = 9/351 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +MS AL + +G TS NP V C+IVKDG+++G G G PHAEV AL+ AG Sbjct: 9 ELDNHYMSRALELAALAMGRTSPNPLVGCVIVKDGVIVGEGYHQKAGTPHAEVHALQAAG 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGATAYVTLEPCSH+G++PPCA +I+ GI+RVVV + DP+ VSG+G+ L GI Sbjct: 69 EHARGATAYVTLEPCSHFGKTPPCADALIKAGIQRVVVAMVDPNPLVSGQGITRLRAAGI 128 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + E E + +L + K A++ D I S ++ S+ V Sbjct: 129 QVDVGLKEKEARTLNKGFLKAMQTGLPFVLYKSALTLDGKIATESGDSKWVSNEASRAYV 188 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR D I+VG TV D+P L CR++ + P+R+++D ++ L + ++ ++ A Sbjct: 189 HRLRDHFDVIMVGSETVRQDNPALNCRID--EGRDPVRLLVDGALQIPLQAAVLASSCTA 246 Query: 244 PVIIVTENDDPVLALAFRK--KNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAV 298 P +I T P+ L + +N+ + D LK LL LV RG S+L+EGG + Sbjct: 247 PCLIATTASAPLDKLKALRALENVEVWQYDSPRYVPLKDLLGDLVKRGWNSVLLEGGGGL 306 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 A S + ++L+D + + +IG G PSPL L + ++ D Sbjct: 307 AGSLLRAQLIDEVEFIYAPKLIGGKG-PSPLSGLELPLMAQAIPLEFLEID 356 >gi|239617610|ref|YP_002940932.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1] gi|239506441|gb|ACR79928.1| riboflavin biosynthesis protein RibD [Kosmotoga olearia TBF 19.5.1] Length = 345 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 180/362 (49%), Gaps = 23/362 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +FM A+ +R GL + NP V +IVK+G ++ G Y G HAE+ A+E A Sbjct: 1 MDEKFMELAIEEARKGEGLVNPNPLVGAVIVKNGKILSTGYHEYFGGRHAEIVAIENAKK 60 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GA YVTLEPC HYG++PPC II G V + DP+ V G+G + L Sbjct: 61 MGYDIKGAEIYVTLEPCVHYGKTPPCTDRIIREGFSAVYIGTLDPNPMVHGKGEEKLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + K + + K + LK+A+S D I IT ++ Sbjct: 121 GICVKHGILEVKAKELIEVFAKYMKTKMPFVALKLAMSLDGFITSMRGKRERITSDRARE 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTA 240 +VH LR AI++G T ++DDP LTCR + + +P+RIILD K ++ K+ A Sbjct: 181 KVHRLRNYYSAIMIGSKTAISDDPLLTCRYSFCK-RNPIRIILDRSGKTAKVNLKLF--A 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 II T +++ +N+ +I D + +L L G+ S+LVEGGA VA Sbjct: 238 QEGRTIIFTSSNER------WPENVEVIRKDDLSPEPILKALGKMGIDSVLVEGGANVAS 291 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 FI D I L+ + I G G SP + + K F R + + D+ E I C Sbjct: 292 QFI--NYADKIHLFYAPIAFGNG--LSPFDRKF--KGFTTKRVEVYHPDIYWELIP---C 342 Query: 361 LQ 362 Q Sbjct: 343 SQ 344 >gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1] gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1] Length = 376 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 18/365 (4%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 1 MPSQAAVLDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE A GA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GLQ Sbjct: 61 ALRQAGERAIGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E+E + +L R + K+A+S D MA S ITG Sbjct: 121 LAEAGIEVASGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA+S +L +VLAD+ +T R L +P+R+++D Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSR 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L LD+ + +++ DDP A A + DL LL L RGV Sbjct: 241 LRLPLDAAFFQAGPA--LVVAAVADDPRYAAAGHELLSLPGDNGQVDLPALLQALAARGV 298 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRD 344 +L+E GA + +F LVD L+ + +G P PL + Sbjct: 299 NEILLEAGAGLVGAFAQQGLVDEYQLFVAGTFLGSQARPLLDWPLGKMSEAPRLKITEMR 358 Query: 345 YFGSD 349 G D Sbjct: 359 AVGDD 363 >gi|121729759|ref|ZP_01682198.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52] gi|147673692|ref|YP_001217785.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] gi|121628510|gb|EAX60996.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V52] gi|146315575|gb|ABQ20114.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] gi|227014167|gb|ACP10377.1| riboflavin biosynthesis protein RibD [Vibrio cholerae O395] Length = 367 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 179/374 (47%), Gaps = 27/374 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ ++ +L R + LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L + + +T +PV+ V + + A K V Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343 L VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 NQLWVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350 Query: 344 DYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 RMVGADLRIIATPK 364 >gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91] Length = 369 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 173/354 (48%), Gaps = 13/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++A G + Sbjct: 1 MQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L GI + Sbjct: 61 RDATVYVTLEPCSHFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVR 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E +++R R + +K A S D +A S ITG +++ H Sbjct: 121 CGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ AIL GIGTV DDP+L R P R+++D + L +++++ L Sbjct: 181 RARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFC 239 Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + A A R + I+ DL +L L RG+ L VE G + S Sbjct: 240 GALDAQSEPRADALRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSL 299 Query: 303 INSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + R VD +++Y + ++G + + G D+ + Sbjct: 300 LRERCVDELLVYLAPSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRI 353 >gi|15605463|ref|NP_220249.1| riboflavin deaminase [Chlamydia trachomatis D/UW-3/CX] gi|237805081|ref|YP_002889235.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/TZ1A828/OT] gi|255311561|ref|ZP_05354131.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 6276] gi|255317862|ref|ZP_05359108.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis 6276s] gi|13633735|sp|O84735|RIBD_CHLTR RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|3329187|gb|AAC68325.1| Riboflavin Deaminase [Chlamydia trachomatis D/UW-3/CX] gi|231273381|emb|CAX10296.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis B/TZ1A828/OT] gi|296436276|gb|ADH18450.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/9768] gi|296437205|gb|ADH19375.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/11222] gi|296438136|gb|ADH20297.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/11074] gi|297140637|gb|ADH97395.1| Riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Chlamydia trachomatis G/9301] Length = 375 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332 >gi|76789470|ref|YP_328556.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chlamydia trachomatis A/HAR-13] gi|76168000|gb|AAX51008.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydia trachomatis A/HAR-13] Length = 375 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 161/329 (48%), Gaps = 5/329 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGEKGRIFAPPNPWVGCVIVKNGGVIGEGWHQGIGSPHAEVCAVQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 GA +VTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L Sbjct: 64 QKCSLEGAEVFVTLEPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E K L YL ++ + +K A S D G S I+G +++ Sbjct: 124 GIPVYVGVGSQEAKTSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AI+VG TV D+P L+ R L E P+R+++D + L+S++ Sbjct: 184 DVGKLRAESQAIIVGARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 + + + T+ + + + DLK LL L RG +LVEGGA Sbjct: 244 SSGSTLFATTQQCPKEYIQKLKDLGVEVWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +F +LV++ ++Y +G+ G P Sbjct: 304 LHSAFWQQKLVNAGVIYWGPKFLGDQGQP 332 >gi|237755714|ref|ZP_04584322.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium yellowstonense SS-5] gi|237692135|gb|EEP61135.1| riboflavin biosynthesis protein RibD [Sulfurihydrogenibium yellowstonense SS-5] Length = 371 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 116/327 (35%), Positives = 166/327 (50%), Gaps = 10/327 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 +M AL ++ GLT NP+V +IVKDG +IG+G G PHAE +A+++A G Sbjct: 8 ESYMKIALDLAKIRKGLTHPNPTVGAVIVKDGKIIGKGYHTKAGMPHAEREAIKDAKEKG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +G+T +VTLEPC HYGR+PPC IIE GI VV+ D + V G+G+ L GI Sbjct: 68 HDLKGSTMFVTLEPCCHYGRTPPCTSAIIEEGISEVVIGALDQNPIVKGQGVNILKSHGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++ ++E E + + T EKR + LK+A S D I S IT S+ Sbjct: 128 KVITGVLEKECEKINEDFFTYIKEKRPFVHLKVAQSFDGKIATKIGDSKWITSEKSRQFA 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR ++ AILVG T L D+P LT R E P R+++D K+ I Sbjct: 188 HQLRKEASAILVGTNTALKDNPALTVRHVE-TEKQPARVLIDKKLKVPPTYNIYNNEAKT 246 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298 VI + L K+N+ I++ D + + +L L R + LLVEGG V Sbjct: 247 IVITSKLANQENLKRLSEKENVEIVFLDLDENEKFKIDDILNTLYEREIVHLLVEGGRGV 306 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGI 325 I R D I ++ + ++IG GI Sbjct: 307 ITDLIKERKFDKISIFTAPLLIGNDGI 333 >gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sutterella wadsworthensis 3_1_45B] gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sutterella wadsworthensis 3_1_45B] Length = 415 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 181/360 (50%), Gaps = 17/360 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +M AL +R ++ NPSV +IV++G ++G G T G PHAEV AL A Sbjct: 52 SAADDAWMDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRSA 111 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G GAT YVTLEPCSHYGR+PPCA +I+ + RVV V DP+ +V GRG++ L Sbjct: 112 FERGLSVEGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRMLL 171 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + + E+E + A+LTR + +K AV+ D S ITG + Sbjct: 172 EAGIPAELGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEAA 231 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V R ++ A+L GIGTVLADDP++ RL QE P+RI++DP + K++ T Sbjct: 232 RADVQFWRGRAGAVLTGIGTVLADDPQMNVRLPD-QERQPLRIVIDPRMETPPAGKLL-T 289 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVE 293 + V I + P A + DL++L+ L R V + VE Sbjct: 290 SKGGKVFIAAAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVE 349 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSD 349 G ++ + + L+D ++ Y + + G G +P P E G + D G D Sbjct: 350 AGPRLSGALFAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPGA-AYRWRLQSLDQIGGD 408 >gi|327484786|gb|AEA79193.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae LMA3894-4] Length = 365 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 117/371 (31%), Positives = 177/371 (47%), Gaps = 26/371 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ + Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ ++ +L R ++ LK+A S D +A S IT ++ Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+ L R P+R+ILD +L Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + +T +PV+ V + + A K V + Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAEHGKLDLRELLALLA--------QQHNVNQV 291 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346 VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351 Query: 347 GSDVCLEYIGK 357 G+D+ + K Sbjct: 352 GADLRIIATPK 362 >gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR51-B] gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR51-B] Length = 371 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 185/374 (49%), Gaps = 27/374 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 +S D +M+ AL + + NP V C++V +G VIG G T G HAE++ALE A Sbjct: 3 TSADEIYMARALALAGEARFWATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GATAYVTLEPC+H GR+ PCA +I+ G+ RVVV V DP V GRG+ L G Sbjct: 63 TADPSGATAYVTLEPCAHTGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ + + +L R + LK+A S D MA S ITG +++ Sbjct: 123 IEVSVGVLAVQASDLMAGFLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSL 232 V LRA+S AI+ GIGTVLADD LT R L P+R++LD + Sbjct: 183 VQRLRAESCAIVTGIGTVLADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPG 242 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 D++I T +I + D P A + + DL +L L RG+ +L+ Sbjct: 243 DARITSTGAPTLIITAPDVDAPDYAGEVEVASNATGHDGRLDLSAVLMQLGARGINEVLL 302 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A +F+ + LVD ++LY++ ++G+ P + D V L Sbjct: 303 EVGPTLAAAFLKAGLVDEVVLYQAPKLLGDTARP-----------LAALSIDRLAEAVAL 351 Query: 353 EY-----IGKNLCL 361 EY +G +L + Sbjct: 352 EYQDVTPVGNDLRI 365 >gi|223939370|ref|ZP_03631249.1| riboflavin biosynthesis protein RibD [bacterium Ellin514] gi|223891974|gb|EEF58456.1| riboflavin biosynthesis protein RibD [bacterium Ellin514] Length = 365 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 122/358 (34%), Positives = 173/358 (48%), Gaps = 16/358 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL +R G TS NP V ++VK G VIGRG G PHAEV+AL++A G + Sbjct: 1 MQNALALARRAYGNTSPNPLVGAVLVKHGKVIGRGWHHRAGQPHAEVEALKDAASKGNDP 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +GAT YVTLEPC +GR+PPC + I I++VVV DP+ +GR L + GI +V Sbjct: 61 KGATLYVTLEPCCTHGRTPPCTEAIKAAKIKKVVVAATDPNPAHAGRAFPLLERAGIKVV 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E ++ V + +K A++ D I AG S ITG ++ L Sbjct: 121 SGILAEEAGELNESFNHWIVHGTPLVIVKAAMTLDGKIATAGGESKWITGEKARAYGMKL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R +DAILVG+ TVLADDP LT R+ N +E RIILD + L +K++ Sbjct: 181 RQGADAILVGVNTVLADDPSLTVRVQSRNKSEEKKFRRIILDSQARTPLKAKVVSDEFRE 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVA 299 IV P + + N++ + DL+ L+ L G V SLLVEGG V Sbjct: 241 FTTIVVLKSAPERRVTALARQANVLVAPEKQGKIDLRWLVKKLGGENVMSLLVEGGGEVN 300 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCL 352 SF+ RL + + + ++G + V G+D+ L Sbjct: 301 ASFLLGRLAHRVAFFYAPKILGGRDARKGVAGDGSTTLADAIKLKDVEWRRLGADLLL 358 >gi|33862648|ref|NP_894208.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9313] gi|33634564|emb|CAE20550.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9313] Length = 368 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 176/358 (49%), Gaps = 10/358 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AG++A Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGKQAS 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC + +I G+RRVVV + DPD RV+G G+ L G+ ++ Sbjct: 74 GGTLLVTLEPCCHQGRTPPCTEAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E A++ R R LK A+S D + S I+G ++ VH LR Sbjct: 134 AVLELEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARRWVHRLR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q DA++VG GTV ADDP LT R G + P R++L L +++ TA+ ++ Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWNTAVAQ-TLV 250 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + LA + ++ + +LL L + +L E G +A + + Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPVSEPLELLQALAQQDCNRVLWECGPGLAAAALQQGC 310 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360 V + + + ++G +PL++ L V G+D L+Y C Sbjct: 311 VQELAVVVAPKLLGGLPARTPLDDLGLTSMKEVVGLASGSLQSLGADWLLQYELSKHC 368 >gi|56416383|ref|YP_153457.1| riboflavin biosynthesis protein [Anaplasma marginale str. St. Maries] gi|222474753|ref|YP_002563168.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Florida] gi|254994610|ref|ZP_05276800.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Mississippi] gi|56387615|gb|AAV86202.1| riboflavin biosynthesis protein [Anaplasma marginale str. St. Maries] gi|222418889|gb|ACM48912.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Florida] Length = 371 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 138/353 (39%), Positives = 195/353 (55%), Gaps = 11/353 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAG 64 D RFMS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AG Sbjct: 3 DDERFMSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A G+T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ Sbjct: 63 EAAAGSTVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGV 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +++ + + + + ++R IT+K+A + D I + IT +++ V Sbjct: 123 EVKLGVLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + Sbjct: 183 HKQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVV 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHS 301 P I T+NDD A R I C+ D L + L G+T L VEGG + Sbjct: 243 PTYIATDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTE 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351 + LVD I R+ V GE G+ S L L +F V+ F D Sbjct: 299 LLKRGLVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 351 >gi|282889950|ref|ZP_06298485.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500143|gb|EFB42427.1| hypothetical protein pah_c008o037 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 359 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 118/359 (32%), Positives = 177/359 (49%), Gaps = 15/359 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + L+ NP V +IVK G ++G G T G HAE+ AL +A +A + Sbjct: 1 MDRALALATQARLLSPPNPWVGAVIVKQGKIVGEGFTQAPGEAHAEIMALRQALHQAENS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+G++PPC II+ I VV+ ++DPD +VSGRG+Q L + GI + + Sbjct: 61 TLYVTLEPCSHFGKTPPCVNAIIQAKIAHVVIALEDPDPQVSGRGIQKLKEAGISVTVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + L YL ++ R K A+S D + + S IT +S+ LRA+ Sbjct: 121 EQQRATELLEPYLFQRKTGRPFCVAKAAISLDGRVAASDHTSKWITNELSRQDAQRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVII 247 S AIL+G GT D P LT R + L +P+R++LD L L S + T L I+ Sbjct: 181 SQAILIGSGTAKYDHPRLTVRSFSPLPYQAPLRVVLDSRGTLTDLSSPLFNTNLAPTCIL 240 Query: 248 VTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 T+ + ++ I I + DL +++ L +G+ +L+EGGA + Sbjct: 241 TTDRCSTEIRDMWQSHGIESIILSQAKNGEGVDLNEVMKTLGKKGILQVLIEGGATLLGQ 300 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 F++ +L+ ++ LY V+G GIP SP + F V L Y Sbjct: 301 FMHEQLIQTLHLYIGPKVLGCDGIPLFGSFSP-QTLINAPQFQLKETKRLDDCVYLHYR 358 >gi|229524273|ref|ZP_04413678.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae bv. albensis VL426] gi|229337854|gb|EEO02871.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae bv. albensis VL426] Length = 367 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 180/374 (48%), Gaps = 27/374 (7%) Query: 1 MPV-SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP+ +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPMFTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + +A E RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 61 MRQAAELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E++ + +L R ++ LK+A S D +A S IT Sbjct: 121 RDAGIEVEVGLLEADARALNRGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPH 227 ++ V RAQ+ AIL TVLAD+ L R + L P+R+ILD Sbjct: 181 ARKDVQRFRAQASAILSTSQTVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 +L + + +T +PV+ V + + A K V Sbjct: 241 HQLHPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNV 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRR 343 + VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 291 NQVWVEAGSQLAKSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDC 350 Query: 344 DYFGSDVCLEYIGK 357 G+D+ + K Sbjct: 351 RMVGADLRIIATPK 364 >gi|255747035|ref|ZP_05420980.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholera CIRS 101] gi|262161421|ref|ZP_06030531.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae INDRE 91/1] gi|255735437|gb|EET90837.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholera CIRS 101] gi|262028732|gb|EEY47386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae INDRE 91/1] Length = 365 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 176/371 (47%), Gaps = 26/371 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ + Sbjct: 2 FTSFDHQMMSRAIELAWRGRFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ ++ +L R + LK+A S D +A S IT ++ Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+ L R P+R+ILD +L Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + +T +PV+ V + + A K V L Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNVNQL 291 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346 VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351 Query: 347 GSDVCLEYIGK 357 G+D+ + K Sbjct: 352 GADLRIIATPK 362 >gi|91225069|ref|ZP_01260291.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01] gi|91190012|gb|EAS76283.1| riboflavin-specific deaminase [Vibrio alginolyticus 12G01] Length = 375 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 114/367 (31%), Positives = 172/367 (46%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+ Sbjct: 10 FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + ++ + LK+A S D ++ S IT ++ Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPAARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R + L P+R+ILD L Sbjct: 190 DVQRYRAISGGILSTSKTVIDDNASLNVRWDDLPNSVQAQYLQEELRQPVRVILDRQNHL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 + K+ T +IV + D + L D DL L + + Sbjct: 250 TDALKLFHTDGER--VIVRSDGDCIPLLD---------SADQIDLSTTLKRISDEHHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A + I + LVD +I+Y + ++G G L + Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|328951151|ref|YP_004368486.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis DSM 14884] gi|328451475|gb|AEB12376.1| riboflavin biosynthesis protein RibD [Marinithermus hydrothermalis DSM 14884] Length = 390 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 117/376 (31%), Positives = 182/376 (48%), Gaps = 29/376 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D R+M AL+ + G T NP V ++VKDG ++G G G PHAEV AL + Sbjct: 1 MSHLDERYMRRALQLAERARGHTHPNPLVGAVVVKDGRIVGEGYHPRAGLPHAEVFALRQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YVTLEPC+H+GR+PPC ++E G+ RVVV DP+ + + GL+ L+Q Sbjct: 61 AGEAARGATVYVTLEPCNHHGRTPPCTTALLEAGVARVVVAARDPNPK-AQGGLERLAQA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E + + + R + K A + D + + +TG S+ Sbjct: 120 GVAVQWGVLEAEARAQNEVFFHGLEQNRPFVLWKAATTLDGRVATRTGHAQWVTGPQSRR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 H R AI VG+GTVLADDP LT R + P++++ D + Sbjct: 180 IAHAYRQSLAAIAVGVGTVLADDPALTVRDPEFRPYPWMLEPPPLRDPLKVVFDTQARTP 239 Query: 232 LDSKIIKTALL---APVIIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILV 283 +++ A V++ P A ++ + L+ L L Sbjct: 240 PQARLFAPGPRGEPARVVVFVGAAAPLERTRALEAAGARVVPLPDEEGRPSLRAALEWLW 299 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----- 338 G+ LL+EGG +A +F+ + LVD + L+ + ++GEG PL G Sbjct: 300 NEGIDGLLLEGGPTLAGAFVRAGLVDKLALFLAPKLVGEGR---PLLAGLGAARMDEALG 356 Query: 339 -MCVRRDYFGSDVCLE 353 RR++ G ++ LE Sbjct: 357 VTLTRREWVGEELWLE 372 >gi|89897925|ref|YP_515035.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56] gi|89331297|dbj|BAE80890.1| riboflavin biosynthesis protein [Chlamydophila felis Fe/C-56] Length = 377 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 102/337 (30%), Positives = 161/337 (47%), Gaps = 8/337 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ NP V C+IVK+G +IG G G PHAE +A+ Sbjct: 4 FSEQQLFFMRRAIELGENGRLSAPPNPWVGCVIVKNGRIIGEGYHKKKGQPHAEEEAVNS 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E G YVTLEPC HYG +PPC +I+ + V V + DPD RVSG+G+ L Sbjct: 64 TTESIEGCDVYVTLEPCCHYGSTPPCVNLLIKHKVSTVYVALLDPDGRVSGKGIAALRNA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + + E + L +Y+ ++ + I +K A + D + + S IT ++ Sbjct: 124 GIRVYVGLGKEEAESSLKSYIYQRTYGKPWIVIKSAATLDGQVADSDGQSQWITCPEARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKT 239 V +RA S AI++G TVL DDP LT R L + P+R+++D + +K+ Sbjct: 184 DVGKIRASSQAIVIGSKTVLQDDPLLTARKPSGELYSNQPLRVVVDSSGIVPPQAKVFHV 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 + + + T + ++ R DL +L+ L + V +LVEGG Sbjct: 244 PGKS-LYVTTTRSSSEHIKNIEDLGVEVLVTQPRESKVDLHELVAYLSNKTVLQVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 + + SF+ RL ++++LY + G+ P + G Sbjct: 303 SILHTSFLKERLANALVLYLGPKIFGDQRKPLFGDLG 339 >gi|121533690|ref|ZP_01665517.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans Nor1] gi|121307681|gb|EAX48596.1| riboflavin biosynthesis protein RibD [Thermosinus carboxydivorans Nor1] Length = 379 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 120/345 (34%), Positives = 186/345 (53%), Gaps = 10/345 (2%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G TS NP V +IVKDG ++G G G PHAE+ A+ +AG+ A+ AT YVTLEPCSH Sbjct: 18 EGQTSPNPMVGAVIVKDGTIVGEGWHHRAGTPHAEIHAINQAGDLAKDATLYVTLEPCSH 77 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 YGR+ PC Q I++ GI RVV + DP+ V+G+G ++L + G+ +++ ++ +E Sbjct: 78 YGRTGPCVQAIVQAGITRVVAAMTDPNPLVAGQGFKFLRENGVEVIEGVLATEAAQLNEV 137 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 ++ K LK A+S D I S ITG ++ +VH R++ DAILVG+GTV Sbjct: 138 FIKWITTKMPFGILKTAMSLDGKIATYTGHSRWITGLPARTRVHEWRSKYDAILVGVGTV 197 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 +AD+PELT RL +P+RI+ D + L++KI+ +I VT A Sbjct: 198 VADNPELTARL-IPNGKNPLRIVADSLARTPLNAKIVTDGKAPTIIAVTPEAPSDRIAAL 256 Query: 261 RKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + +I D DL+ L L R VTS+++EGG A+ S + + +VD + + + Sbjct: 257 KASGAEVIQVARGPDGIDLRSLFAYLGSRSVTSVMIEGGGALGASALAANVVDKVYWFIA 316 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 +IG P P+ E V + + +E +G++ + Sbjct: 317 PKIIGGRSAPGPIGGMGAEYLEQAVELE----NTAIECVGEDFLV 357 >gi|260767835|ref|ZP_05876770.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio furnissii CIP 102972] gi|260617344|gb|EEX42528.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio furnissii CIP 102972] Length = 369 Score = 323 bits (829), Expect = 2e-86, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 28/370 (7%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E++ A++ R + LK+A S D +A S IT Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227 ++ V RAQ+ A+L TVLAD+ LT R L H P+R ILD Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286 +L + + T V+ V D V + + +L+++L L Sbjct: 241 HQLHRELALYATDSA--VLRVANQDADV--------CVALDEHGQLNLREVLGALAKHHN 290 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVR 342 + + VE GA +A S + LVD +++Y + ++G G G + Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALNIQD 350 Query: 343 RDYFGSDVCL 352 G D+ + Sbjct: 351 CRMVGPDIRV 360 >gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440] gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440] Length = 378 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 3 MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 62 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ Sbjct: 63 ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 122 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E+E + +L R + K+A+S D MA S ITG Sbjct: 123 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA+S +L +VLAD+ +T R L +P+R+++D Sbjct: 183 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGR 242 Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +L L + + P ++VT DDP A A + DL LL L RG Sbjct: 243 LRLPLAAPFFQ---AGPALVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 299 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343 V +L+E GA + +F LVD L+ + +G P P+++ Sbjct: 300 VNEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 359 Query: 344 DYFGSD 349 G D Sbjct: 360 RAVGDD 365 >gi|315179335|gb|ADT86249.1| riboflavin biosynthesis protein RibD [Vibrio furnissii NCTC 11218] Length = 369 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 182/370 (49%), Gaps = 28/370 (7%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 MP +SFD + MS A++ ++ T+ NP+V C+I + ++G G G PHAEV A Sbjct: 1 MPTFTSFDYQMMSRAIKLAQRGRFTTAPNPNVGCVITQGESIVGEGFHFRAGEPHAEVHA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE++ GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ +V+GRG+ L Sbjct: 61 LRMAGEQSVGATAYVTLEPCSHYGRTPPCAEGLIKAGVARVICAMQDPNPQVAGRGIDML 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E++ A++ R + LK+A S D +A S IT Sbjct: 121 REAGIEVQVGLLEADALALNPAFIKRMKTGMPWVQLKMAASLDGQTALANGRSQWITSPQ 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-----------SPMRIILDPH 227 ++ V RAQ+ A+L TVLAD+ LT R L H P+R ILD Sbjct: 181 ARQDVQAYRAQAGAVLSTSQTVLADNASLTVRWQDLPAHVQATYAEQHLRQPVRAILDRQ 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RG 286 +L + + T V+ V D V + + +L+++L L Sbjct: 241 HQLHRELTLYATDSA--VLRVANQDADV--------CVALDEQGQLNLREVLGALAKHHN 290 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVR 342 + + VE GA +A S + LVD +++Y + ++G G G + Sbjct: 291 INHIWVEAGATLAKSLLEQDLVDELVVYLAPKIMGSDGRGLFGALGLTDMQQVLALSIQD 350 Query: 343 RDYFGSDVCL 352 G D+ + Sbjct: 351 CRMVGPDIRV 360 >gi|75675917|ref|YP_318338.1| riboflavin biosynthesis protein RibD [Nitrobacter winogradskyi Nb-255] gi|74420787|gb|ABA04986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrobacter winogradskyi Nb-255] Length = 387 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 201/364 (55%), Gaps = 12/364 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D FM AL R +G ++ NP+V +IVKDG+++GRG T GG PHAE +AL AG Sbjct: 19 TVDLHFMQLALALGRRSLGASAPNPAVGAVIVKDGVIVGRGWTQPGGRPHAEAEALRRAG 78 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH G++PPCA +I GI RVV ++DP VSG+G L G+ Sbjct: 79 EAARGATLYVTLEPCSHVGKTPPCADAVIAAGITRVVSAIEDPTPEVSGQGHARLRAAGV 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + +E + R ++R HI LK+AVS D I AG V ITG ++ + Sbjct: 139 AVEIGLCAAEAAHHHAGHFRRVRDRRPHIILKLAVSSDGKIAAAGGVPVAITGEAARARA 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HLLRAQ AILVGIGTVLADDP LTCRL G++ SP+R++LD ++ S+++++A Sbjct: 199 HLLRAQCSAILVGIGTVLADDPLLTCRLPGMETRSPLRVVLDQALRIPESSRLVQSARET 258 Query: 244 PVIIVTEN-DDPVLALAFRKKNINIIY------CDCRDLKKLLTILVGRGVTSLLVEGGA 296 P+ I+T + A+ ++ DL +L L GVT L+VEGGA Sbjct: 259 PLWIMTSEFAEASRAMKLGAAGARVMRVPGAAGAPGLDLVAVLRALSESGVTRLVVEGGA 318 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 VA SFI + LVD L R IG+ G+ + PL F + D Sbjct: 319 RVAASFIAAALVDEAWLLRGPDPIGDDGVAALGALPLTVITGSPEFRMCAGETLDQDALA 378 Query: 353 EYIG 356 Y Sbjct: 379 IYER 382 >gi|313673619|ref|YP_004051730.1| riboflavin biosynthesis protein ribd [Calditerrivibrio nitroreducens DSM 19672] gi|312940375|gb|ADR19567.1| riboflavin biosynthesis protein RibD [Calditerrivibrio nitroreducens DSM 19672] Length = 385 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 124/357 (34%), Positives = 181/357 (50%), Gaps = 11/357 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G TNP V ++VK+G VIGRG G PHAE++AL++ E G Sbjct: 8 MDEAIQLALMGKGYNYTNPIVGAVVVKNGKVIGRGYHTGFGMPHAEIEALKDCEESPEGG 67 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPCS G++PPC II+ GI+RV + V DP+ SG+ ++ L+ GI + Sbjct: 68 DLYVTLEPCSTTGKTPPCTDAIIKSGIKRVFIGVVDPNPNHSGKAIKILNDAGIEVFLGF 127 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + + ++++ + TLK A S D MI + S I+G S+ VH LR+ Sbjct: 128 NEHVCAEIIEDFTKFILKRQPYFTLKAASSIDGMIATSTGDSKWISGESSRIYVHYLRSV 187 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 SD I+VGI TV DDP L R N +E P++IILD +S +SK++K +I T Sbjct: 188 SDGIIVGINTVKNDDPLLNVR-NFNREKEPLKIILDSKLSISPESKVVKDFGKYLIIATT 246 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 DD + ++ + ++ C + DL L LV + ++ VEGG V SFI Sbjct: 247 VRDDSKM-DNLKRYGVRVLICKEKNGFVDLMDLSDKLVSLNLLNIFVEGGGKVFASFIKE 305 Query: 306 RLVDSIILYRSQIVIGEGGIPSP--LEEGYLEKNFMC--VRRDYFGSDVCLEYIGKN 358 LVD + S VIG G+P L +E + C F D+ Y + Sbjct: 306 GLVDRFYHFISPKVIGGDGVPLFGDLNCEKIEDAYKCKLTDTKRFEEDILHIYKFND 362 >gi|262395034|ref|YP_003286888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. Ex25] gi|262338628|gb|ACY52423.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio sp. Ex25] Length = 375 Score = 322 bits (827), Expect = 3e-86, Method: Composition-based stats. Identities = 115/367 (31%), Positives = 174/367 (47%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D MS A++ +R + T+ NP+V C+IV+D ++G G G PHAEV A+ Sbjct: 10 FSDLDFAMMSRAIKLARRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + ++ + LK+A S D ++ S IT +++ Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALSNGQSQWITSPVARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R + L P+R+ILD L Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 + K+ T +IV+ + D + L D DL L + + Sbjct: 250 TDALKLFHTDGER--VIVSPDGDCIPLLD---------SADQIDLSTTLKRISDEHHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A + I + LVD +I+Y + ++G G L + Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|154706505|ref|YP_001424060.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Coxiella burnetii Dugway 5J108-111] gi|154355791|gb|ABS77253.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Coxiella burnetii Dugway 5J108-111] Length = 354 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 114/359 (31%), Positives = 178/359 (49%), Gaps = 14/359 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M SS D ++ AL + G + NPSV ++VKD +I G G PHAEV+A+ Sbjct: 1 MNDSSLD--YLKKALSLAEIRRGFCAPNPSVGAVVVKDDKIISTGFHKRSGLPHAEVEAI 58 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + ++ARGA YVTLEPC H+G++PPC II+ GI+ V + DP++ V G+G++ L Sbjct: 59 KSLDDKARGAALYVTLEPCCHFGKTPPCTDLIIQSGIKAVYYGLHDPNLAVCGKGIEQLQ 118 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + G+ + E F +Y KR +T K+A+S D I V +TG + Sbjct: 119 RAGVNCFLIELPEINAFYESYRYWIKHKRPWVTAKLALSLDGKIAGNEGKPVRLTGEGLR 178 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H R +SDA+L I T+L DDP+L RL G + P+ I LD H +L L++ +I Sbjct: 179 QYTHERRKKSDALLTTINTILTDDPKLNVRLQGEEIKKPIYI-LDTHLRLPLNA-LIHQT 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 + ++ D +KNI I + DL ++L ++ G+ L +E G Sbjct: 237 AESIIVFHGNEADKKQQQRLMQKNIRCIEIARRSEGLDLNEVLDVIGNDGIHDLWIEAGG 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM--CVRRDYFGSDVCLE 353 SF+ L++ ++Y + ++G +P+ L +F V F DV E Sbjct: 297 TCFQSFLKENLINRALIYIAPKILGSTAMPAF----QLPFSFSGYSVEWRQFREDVMGE 351 >gi|86749753|ref|YP_486249.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris HaA2] gi|86572781|gb|ABD07338.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris HaA2] Length = 389 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 159/362 (43%), Positives = 208/362 (57%), Gaps = 12/362 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G T TNP+V ++VKDG+++GRG T GG PHAEV+AL AGE Sbjct: 27 DRRFMQLALTLGRRGLGRTGTNPAVGAVLVKDGVIVGRGWTQDGGRPHAEVEALARAGEA 86 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+GRSPPCA II G+ RVV ++DP+ V G+G L GI + Sbjct: 87 ARGATLYVTLEPCSHHGRSPPCADAIIAAGVARVVSAIEDPNPLVGGQGHGKLRAAGIAV 146 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E +L R E+R H+ LK+AVS D+ I G V ITG ++ +VHL Sbjct: 147 ELGVCVEEAARDHAGHLLRVREQRPHVVLKLAVSTDDKIAADGRKPVAITGEAARARVHL 206 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LD ++ DSK++ +A P+ Sbjct: 207 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDRALRIPGDSKLVHSARATPL 266 Query: 246 II-VTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + +E +P A +I D+ +L L +GVT LLVEGGA Sbjct: 267 WLMASEIAEPAAAARLGAAGAEVIRAPDCQRTPGLDIAAVLAALSEKGVTRLLVEGGARA 326 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +F+ S LVD I L R IGE G+ + PL + + G D + Sbjct: 327 ARAFVESGLVDEIWLLRGDKAIGEDGVDALDGLPLASITASSAWRVRDSERLGPDTLTIF 386 Query: 355 IG 356 Sbjct: 387 EP 388 >gi|269965078|ref|ZP_06179243.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B] gi|269830381|gb|EEZ84606.1| riboflavin-specific deaminase [Vibrio alginolyticus 40B] Length = 375 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 113/367 (30%), Positives = 170/367 (46%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D MS A++ ++ + T+ NP+V C+IV+D ++G G G PHAEV A+ Sbjct: 10 FSDLDFAMMSRAIKLAKRGIYTTAPNPNVGCVIVRDEEIVGEGYHHRAGEPHAEVHAMRM 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ +V+GRG+Q L Sbjct: 70 AGEKAVGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMVDPNPKVAGRGIQMLRDA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + ++ + LK+A S D + S IT ++ Sbjct: 130 GIEVQIGLLEQDALALNPGFIKYMRTGMPFVQLKMAASLDGQSALNNGQSQWITSPAARQ 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA S IL TV+ D+ L R + L P+R+ILD L Sbjct: 190 DVQRYRAMSGGILSTSKTVIDDNASLNVRWDDLPTSVQAQYLREELRQPVRVILDRQNHL 249 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTS 289 + K+ T +I + P+L D DL L + + Sbjct: 250 TGALKLFHTDGERVIIRSDGDCIPLLD-----------SADQIDLSTTLKRISDEHHINH 298 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDY 345 L VE GA +A + I + LVD +I+Y + ++G G L + Sbjct: 299 LWVEAGATLASAMIKANLVDELIVYLAPKLMGSDGRGLIGALGLSAMADVIDLNITDVRM 358 Query: 346 FGSDVCL 352 G D+ + Sbjct: 359 VGVDIRI 365 >gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herminiimonas arsenicoxydans] gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase); 5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP reductase)] [Herminiimonas arsenicoxydans] Length = 363 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 119/358 (33%), Positives = 178/358 (49%), Gaps = 17/358 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D + + AL + + T+ NP V C+IVK+ VIG G T G HAEVQAL +A Sbjct: 6 DVQGIRLALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANK 65 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + G+T YVTLEPCSH+GR+PPCA +I + RVV + DP+ V+G+GL L G Sbjct: 66 GYDVAGSTVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAG 125 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E+E + +L+R + + +K A S D M + S ITG ++ Sbjct: 126 IEVACGVLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARAD 185 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H+ RA++ AIL GIGTV DDP+LT R + P RI++D ++S ++++ Sbjct: 186 GHVWRARACAILTGIGTVREDDPQLTVRAIDIP-RQPQRIVIDSQLQISPHARVLSGGG- 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298 IV P R II DL L+ L R + L VE G + Sbjct: 244 --TWIVAAQAHPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 S I VD +++Y + ++G+ +P LE +KN G+D+ + Sbjct: 302 NGSLIREDCVDELLVYLAPTLLGDAQRMFNLPV-LESLEQKKNMTFHEVKQIGADLRI 358 >gi|113954800|ref|YP_730035.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311] gi|113882151|gb|ABI47109.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9311] Length = 365 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 181/357 (50%), Gaps = 12/357 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ G ++G G A G HAEV AL +AG A+ Sbjct: 11 WMRRALQLAALAEGQTSPNPLVGAVVLDAQGALVGEGFHAKAGQAHAEVGALAQAGGRAK 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC++ +I+ GI+RVVV + DPD RV+G G+Q L G+ ++ Sbjct: 71 GGTIIVTLEPCCHQGRTPPCSEAVIQAGIQRVVVALKDPDPRVAGGGIQRLRDAGLEVIT 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E A++ R R LK A+S D + S I+ ++ VH LR Sbjct: 131 GVLEAEAAHQNRAFIHRVQTGRPWGLLKWAMSLDGRTALPNGESQWISAPPARGWVHQLR 190 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A DA++VG GTV AD+P LT R G++ P+R++L L +++ T L + ++ Sbjct: 191 AGCDAVIVGGGTVRADNPLLTSR--GVRAPEPLRVVLSRSLDLPPQAQLWDTTLAS-TLL 247 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 L + + ++ + DL L L RG +L E G ++A + Sbjct: 248 AHGPGCADRPLPEGPERLELLASEPLDL---LHALAPRGCNRVLWECGPSLAAQAVKQGC 304 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 V + + + ++G +PL E F + + S + E++G +L L L Sbjct: 305 VQELAVVIAPKLLGGTLARTPLGELG----FSAMDQVIPLSALTAEWLGCDLLLGAL 357 >gi|256827880|ref|YP_003156608.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum DSM 4028] gi|256577056|gb|ACU88192.1| riboflavin biosynthesis protein RibD [Desulfomicrobium baculatum DSM 4028] Length = 374 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 174/371 (46%), Gaps = 19/371 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D FM A+R + G T+ NP V ++ + G V+ G G PHAEV+AL +A Sbjct: 4 DCAFMDQAIRLAEQGRGRTAPNPCVGAVLTRGGEVVAEGWHTACGQPHAEVEALRDAQAK 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + RG T YVTLEPC+H G++PPC + I+E G+ VVV DP+ V+G G +L +G Sbjct: 64 GVDPRGCTLYVTLEPCNHQGKTPPCTRAILEAGVPEVVVGCADPNPTVAGGGADFLRGRG 123 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + + E E + + +L Q R + LK+A + D I + I+G S+ + Sbjct: 124 VTVRMGVREQECRDLIADFLVWQTTARPYSILKLATTLDGKIATRDGQAAWISGEASRRE 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL-DSKIIKTAL 241 VH LR A++VG GT AD+P LTCRL G P+ +I+ DS ++ T Sbjct: 184 VHRLRTWCQAVIVGGGTFRADNPSLTCRLPGYDGPQPLAVIVSRSLPDPAQDSNLLSTRP 243 Query: 242 LAPVIIVTENDDP-VLALAFRKKNINIIYCDC-------RDLKKLLTILVG-RGVTSLLV 292 + TE + A + + + C DL L +L RG L Sbjct: 244 DQIIFWTTEAQSRSIRATRLTELGVTVWGLPCLKTPAETLDLNAGLQLLRKDRGCHYTLT 303 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFG 347 EGG +A S LVD + ++++ V+G+ S F V + +F Sbjct: 304 EGGGHLAGSMQRQGLVDELRIFQAMKVLGDEEARSAFAGRKALSMQDCWEFRLVEQGFFE 363 Query: 348 SDVCLEYIGKN 358 +D+ L K Sbjct: 364 TDLYLRLRAKE 374 >gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ralstonia eutropha JMP134] gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ralstonia eutropha JMP134] Length = 371 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 116/354 (32%), Positives = 183/354 (51%), Gaps = 17/354 (4%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76 + T+ NP V C++ K+G +IG+G T G HAE+QAL++A G + GATAYVTL Sbjct: 19 RGMFTTTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTL 78 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135 EPCSH+GR+PPCA ++ GI RVV ++DP+ VSGRGLQ L GI + ++E E + Sbjct: 79 EPCSHFGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 +++R + +K+A S D + S ITG +++ H RA++ AIL Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALLAPVIIVTEND 252 GIGTV D+P++T R P R+++D ++ LD++I+ L PV++ + D Sbjct: 199 GIGTVRDDNPQMTVR-AIPTPRQPQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVD 257 Query: 253 DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 D A + ++ +L+K+L L RG+ L VE G + S I Sbjct: 258 DRERRHALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCA 317 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 D +++Y + ++G+ +P PL +F G D+ L + Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLSRLQDAASFRWHDVRQIGEDLRLIARRSD 370 >gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|46396884|sp|Q89AB0|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 372 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 109/370 (29%), Positives = 184/370 (49%), Gaps = 20/370 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ TS NP+V C+IV + I++G G G HAE+ AL+ +GE+ Sbjct: 3 DIFYMKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYALKTSGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAY+TLEPCSH+G++PPC + + GI RVV+ DP+ +VSG G++WL + GI + Sbjct: 63 AKGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + R I LK+A S D + S IT +++ V Sbjct: 123 TIGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-------------HSPMRIILDPHFKLSL 232 +R +SDAI+ T+L D+P LT R + P+R+I+D +++ Sbjct: 183 VREKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITP 242 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 K IK L +I + +++ + + K+ I DL L+ +L + ++L+ Sbjct: 243 SHKCIKQPGLLFLIRIHSDNN--IWPSHIKQIILNNKSKKIDLIDLVKMLAKYQINNILI 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 E G +++ SF+ +++ +I+Y + ++G P E Y F + G Sbjct: 301 EAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENYSNLSDVPQFKFEKITQIGK 360 Query: 349 DVCLEYIGKN 358 D+ L N Sbjct: 361 DLKLILTKHN 370 >gi|262168270|ref|ZP_06035967.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC27] gi|262023162|gb|EEY41866.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Vibrio cholerae RC27] Length = 365 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 176/371 (47%), Gaps = 26/371 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SFD + MS A+ + TS NP+V C+I + ++G G G PHAEV A+ + Sbjct: 2 FTSFDHQMMSRAIELAWRGHFTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE RGATAYVTLEPCSHYGR+PPCA+ +I+ G+ +V+ + DP+ +V+G+G+Q L Sbjct: 62 AGELTRGATAYVTLEPCSHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E++ ++ +L R + LK+A S D +A S IT ++ Sbjct: 122 GIEVEVGLLEADARVLNRGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RAQ+ AIL TVLAD+ L R P+R+ILD +L Sbjct: 182 DVQRFRAQASAILSTSQTVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + +T +PV+ V + + A K V L Sbjct: 242 HPELALYQTP--SPVLRVASENAELCISAENGKLDLRELLALLA--------QQHNVNQL 291 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYF 346 VE G+ +A S I +LVD IILY + ++G G G E Sbjct: 292 WVEAGSQLAQSLIEQKLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMV 351 Query: 347 GSDVCLEYIGK 357 G+D+ + K Sbjct: 352 GADLRIIATPK 362 >gi|193215778|ref|YP_001996977.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium ATCC 35110] gi|193089255|gb|ACF14530.1| riboflavin biosynthesis protein RibD [Chloroherpeton thalassium ATCC 35110] Length = 368 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 174/360 (48%), Gaps = 13/360 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D ++ L+ ++ G S NP V +IV +G +IG G G PHAEV A+ Sbjct: 6 SEDEFYIDRCLKLAKKGAGFVSPNPLVGSVIVHNGKIIGEGFHEVYGGPHAEVNAIGSVA 65 Query: 65 E--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + +T YV LEPC+H+G++PPCA II I RVV+ DP VSG+G + L Sbjct: 66 QPILLQESTLYVNLEPCAHFGKTPPCADLIIRHKIPRVVIGCLDPFEHVSGKGAEKLRHA 125 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ESE A++ ++KR + LK A + D I S IT S+ Sbjct: 126 GVEVKVGVLESEALRLNEAFIHFHIQKRPFVALKFAQTLDGKIATTSGDSKWITNKASRT 185 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR+ AIL+G T LADDPELT R ++ +P+R++LD + L +KI A Sbjct: 186 LGHQLRSWHSAILIGTNTALADDPELTVR--HVEGKNPVRVLLDRRLSVPLTAKIFNAAA 243 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 V ++N + +KN+ + + ++ +L + + S+ VEGG+ Sbjct: 244 NTLVFTSSQNTNHPKVGKLNEKNVEVFFVTENEAGLSFSEIFQVLYEKKLLSVYVEGGSG 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEK--NFMCVRRDYFGSDVCLE 353 V I + + + ++G G+ + PLE + + + + D+ +E Sbjct: 304 VYSRLIQEGYCEKFYGFIAPKIVGGDGLATFRPLEITNMAEAVSLRFHQVQMLDGDIFIE 363 >gi|258546002|ref|ZP_05706236.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC 15826] gi|258518731|gb|EEV87590.1| riboflavin biosynthesis protein RibD [Cardiobacterium hominis ATCC 15826] Length = 369 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 183/370 (49%), Gaps = 9/370 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D +M AAL +R + T+ NP V C+IVK G +G+G G PHAE AL Sbjct: 1 MTTAAQDIPWMQAALELARQGIFSTAPNPRVGCVIVKGGEAVGKGFHVRAGEPHAEAHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYV LEPC+H GR+PPCA +I G+ RVVV DP+ V+G+G+ L Sbjct: 61 REAGAAARGATAYVNLEPCAHQGRTPPCADALIAAGVARVVVACRDPNPLVAGQGIARLQ 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + + E E + + R R +T+K+A S D +A S IT + Sbjct: 121 AAGIDVTEGVCEEEAQALNSGFFRRITTGRPFVTVKLAASLDGKTALANGESQWITSEAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH R +DAI+ G G+++ D+ LT R L P+R+I+D + D+ + Sbjct: 181 RADVHYHRLAADAIIAGTGSIIRDNARLTARYPTELPNQPPLRVIIDSRLRTPRDAAVFD 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAA 297 +P++IV D + + + R L LL L RGV + VE GA+ Sbjct: 241 DP--SPILIVCGMDARAPNYPAHVEWLRLPLVGGRVPLPALLDELGTRGVNNAFVEAGAS 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A +F+ L D I+LY + ++G G PL+ G+D+ L Sbjct: 299 LAGAFLEQNLADEILLYLAPCLLGSGARELVQLPPLQRLSDRMRARIDDCTPIGADLRLR 358 Query: 354 YIGKNLCLQE 363 + C Q Sbjct: 359 LTPETPCSQA 368 >gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Alkalilimnicola ehrlichii MLHE-1] gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Alkalilimnicola ehrlichii MLHE-1] Length = 369 Score = 322 bits (825), Expect = 6e-86, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 175/363 (48%), Gaps = 12/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D FM ALR +R NP+V C++V+DG+++G G G PHAE AL Sbjct: 4 FSPADNLFMGRALRLARRPQQPPHPNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMALHR 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A GATAYVTLEPCSH+GR+PPC++ ++ G+ RVV + DP+ +V+GRGL+ L Sbjct: 64 AGEQASGATAYVTLEPCSHHGRTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRLRAA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +M + + R R + LK A S D MA S IT ++ Sbjct: 124 GLEVATGLMAEQAAALNPGFTQRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTA 240 VH RA+SDA+L GIGTVLADDP L R G++ P R +LD + D+ +++ Sbjct: 184 DVHRWRARSDAMLTGIGTVLADDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLLRGE 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGA 296 + + + + DL L L G+G +LVE G Sbjct: 244 GA--TLFHGPDVAAGQIRRLTDAGAHCVALPLADGRLDLGAALDWLGGQGCNEVLVEAGP 301 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + + LVD +LY + ++G+ P LE + G D+ L Sbjct: 302 TLGGALSRAGLVDEWLLYLAPHLMGDAARPLLHWPGLETMSQRQPLRVQDCRLVGPDLRL 361 Query: 353 EYI 355 Sbjct: 362 TLR 364 >gi|289523035|ref|ZP_06439889.1| riboflavin biosynthesis protein RibD [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503578|gb|EFD24742.1| riboflavin biosynthesis protein RibD [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 365 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 124/331 (37%), Positives = 188/331 (56%), Gaps = 12/331 (3%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 M VS + +M L +R G TS NP V C++VKD ++G G G PHAEV Sbjct: 3 MKVSEKRQNEYYMRIVLSLARRGTGRTSPNPRVGCVVVKDDKIVGTGFHRCPGSPHAEVM 62 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL A + +RGAT YV LEPC HYGR+PPCA I+E GI+RV + +DP +V GRG+++ Sbjct: 63 ALSMAKDMSRGATLYVNLEPCIHYGRTPPCAPLIVERGIKRVFISTEDPFPKVRGRGVEY 122 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ +V ++ E + +L E R ITLK A+S D + ++ S ITG Sbjct: 123 LRSHGVEVVSGVLSDEARWLNRGFLKVFEEGRPWITLKAAMSLDGDVALSDGSSRWITGR 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S + HLLRA++DA+LVGIGT+L DDPELT R ++ P++IILD H ++ +++K+ Sbjct: 183 SSLKRSHLLRAEADAVLVGIGTILKDDPELTVRY--VEGEHPLKIILDTHLRIPINAKVF 240 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLV 292 K + +++ ++ P + ++ D+K+++ L V LLV Sbjct: 241 KEGDV--LVVTSKGSSPQKVEEIISRGAGVMQIPTDSRGFLDIKEMVCKLPSMDVHYLLV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 EGG V SF +++L D + L+ + ++G G Sbjct: 299 EGGPNVLSSFFDAKLFDEMALFYAPKIMGRG 329 >gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11] gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11] Length = 363 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 185/360 (51%), Gaps = 20/360 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ ++ + T+ NP+V C++VKDG ++G G G PHAEV AL +AG+EA+G Sbjct: 1 MMQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQAGKEAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DR 128 ATAYVTLEPCSHYGR+PPCA+ +I+ G+++V+ + DP+ +V+GRGL L++ GI Sbjct: 61 ATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETASG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E++ + +LTR + + LK+A S D + S IT ++ V RA Sbjct: 121 LLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRYRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKII 237 QS AIL TV+ D+ L R + L PMR ILD L+ D K+ Sbjct: 181 QSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLKLF 240 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGA 296 + + I ++N P++ + + + +LK+++ + V + VE GA Sbjct: 241 QASGEVVTI-SSQNTHPIVTSENHIQCC--VDDEQLNLKEVVNKISRDFNVNHIWVEAGA 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A S I LVD +I+Y + ++G G LE + G D+ + Sbjct: 298 TLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDIRMVGKDIRI 357 >gi|33861821|ref|NP_893382.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33640189|emb|CAE19724.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 362 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 173/357 (48%), Gaps = 9/357 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M A+ + G TS NP V +I+ K+G +I G + G PHAE A Sbjct: 7 IDIKWMKRAIYLASLGKGRTSPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLK 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ++AR T YV LEPC H G++PPC II GI+RV V ++DPD R+SG+G++ L GI Sbjct: 67 KDARDGTIYVNLEPCCHQGKTPPCVDKIISFGIKRVFVSIEDPDKRMSGKGIKLLKDAGI 126 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + + E K +++ + + ++ +K A+S D +G+ S IT S++ V Sbjct: 127 KVHLGLCKKESKELNKSFIHKNITDNAYGVMKWAMSMDGRVGLKNGKSKWITNKDSRSLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LRA DAI++G T+ DDP LT R G++ P+R++ L + S + L Sbjct: 187 HSLRASFDAIVIGGNTLRKDDPFLTSR--GIRNPEPLRVVFTKTLNLPVKSNLWDCKLAR 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++ + L + + I + L +L +G ++ E G +A S + Sbjct: 245 TLVVYDASTADEKFLKRIPEGVEIEKLSSDNPILLSNLLAKKGCNNVFWECGPKLATSAM 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 + + ++ + + ++G +P + N + G+D+ ++ I Sbjct: 305 KAGCIQELMTFIAPKILGGVSSMNPFSDFEFTDMDEVFNLNEPETSFIGNDIYVKSI 361 >gi|327399584|ref|YP_004340453.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411] gi|327182213|gb|AEA34394.1| riboflavin biosynthesis protein RibD [Hippea maritima DSM 10411] Length = 375 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 110/368 (29%), Positives = 180/368 (48%), Gaps = 17/368 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 V + D FM A+ ++ T NP V +IVK+G +IG+G G PHAEV+A+ Sbjct: 12 VMNKDELFMKKAIELAKKAKNKTCPNPLVGAVIVKEGKIIGQGYHKKAGLPHAEVEAINS 71 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + AT YV LEPC+HYGR+PPC+ II GI+RVV+ + D + + + G++ L Sbjct: 72 VKDRNQLKDATIYVNLEPCNHYGRTPPCSLAIINSGIKRVVIGMRDIN-KKASGGIERLK 130 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E E K ++ + ++ +K A+ + I + G S IT + Sbjct: 131 GAGIDVKVGVLEDEAKKLNEVFIENTLNRKPFFIMKAAMLLNGCIAVKGGVSQWITSEKA 190 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR + A+LVGI T++ DDP LTCR+ G P R++LD + K+ + +KI Sbjct: 191 RRFSHRLRGTNSAVLVGINTIIMDDPLLTCRIKGY--RQPKRVVLDMNLKIPISAKIFSE 248 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGG 295 II ++N D R ++NI+ CD + L L+ + S +VEGG Sbjct: 249 YPNNIYIITSKNSDDAKKRILRAMDVNIVECDTENGEFNPADLSEKLLENEICSCIVEGG 308 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGE------GGIPSPLEEGYLEKNFMCVRRDYFGSD 349 + F+ ++L + L + + G G +P ++ + + G D Sbjct: 309 SRTHGYFLKNKLYNKAYLLYAPKITGSYGAFNVAGFDAP-KDLNEAIKLIDTKCKKIGDD 367 Query: 350 VCLEYIGK 357 + E K Sbjct: 368 ILFEGYFK 375 >gi|182678211|ref|YP_001832357.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp. indica ATCC 9039] gi|182634094|gb|ACB94868.1| riboflavin biosynthesis protein RibD [Beijerinckia indica subsp. indica ATCC 9039] Length = 401 Score = 321 bits (824), Expect = 7e-86, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 202/383 (52%), Gaps = 26/383 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M+ AL S+ +G T+ NPSV +IVKDG ++GRG T GG PHAE +AL Sbjct: 19 PDSETDTHYMAEALALSQQGLGRTAPNPSVGAIIVKDGKIVGRGWTQPGGRPHAETEALA 78 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG+ ARGAT YVTLEPCSH+G +PPCA II G+ RVV ++DPD RVSGRG + L + Sbjct: 79 EAGDAARGATLYVTLEPCSHFGVTPPCASAIIAAGVARVVCALEDPDPRVSGRGYRMLRE 138 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPIT 175 GI + ++E+E + ++ R +R +TLK+A++ D + + IT Sbjct: 139 AGIAVTHGVLEAEARRANLGHIRRVQAQRPMVTLKLAMTADGFVASTAPREGQAPRLKIT 198 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILD 225 G + VH +RAQ DAI++GIGT LADDP LT RL+G +E P RI+LD Sbjct: 199 GAAANEHVHRMRAQHDAIMIGIGTALADDPMLTVRLSGQEEMGKAEMGKVAARPRRIVLD 258 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY-------CDCRDLKKL 278 H +L L S +++TA P +++T +D A+A ++ ++ DL Sbjct: 259 SHLRLPLQSHLVQTAADYPTLVLTRDDASAEAMARLREASVVVETLESAQSTPSLDLSAA 318 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLE 335 L L G+T + EGG VA S I D +IL S ++G EG P Sbjct: 319 LQRLASLGLTRIFSEGGPRVAESLIGQHAADEVILLESPAILGAGVEGLSPRARAILGNL 378 Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358 + D Y + Sbjct: 379 TLYRPAETRMIEEDRLTRYERID 401 >gi|90419410|ref|ZP_01227320.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] gi|90336347|gb|EAS50088.1| riboflavin biosynthesis protein [Aurantimonas manganoxydans SI85-9A1] Length = 383 Score = 321 bits (824), Expect = 8e-86, Method: Composition-based stats. Identities = 168/368 (45%), Positives = 222/368 (60%), Gaps = 12/368 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57 P + D RFM+AA+R+++ HVG T+TNPSVA LIV+D ++GRGVTA GG PHAE Sbjct: 14 PATDADRRFMAAAIRYAQRHVGRTATNPSVATLIVRDDGTGPRIVGRGVTAIGGRPHAET 73 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL EAGE ARGATAYVTLEPC+H+GR+PPCA+ ++ GI RVV DPD RV GRG Sbjct: 74 GALAEAGELARGATAYVTLEPCAHHGRTPPCAEALVTAGIARVVSAAADPDPRVDGRGHA 133 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L G+ + R+M +E + YLTR R I LK+A+S+D IG+ G G V ITG Sbjct: 134 ILRAGGLSVTPRVMAAEAAAPISGYLTRHGAGRPEILLKMALSRDGRIGIRGGGQVKITG 193 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ Q HL+RA+ D IL+G GT DDP L CRL G+ + SP RI+LDP + D I Sbjct: 194 AVADAQTHLVRARHDTILIGAGTAQEDDPRLDCRLPGMADRSPNRIVLDPRLRTPPDLTI 253 Query: 237 IKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTS 289 +TA P +I T + DP A ++ + I C+ L +LL L GV S Sbjct: 254 ARTAAETPTLIATLASADPERRAALARQGVQFIACEADPETGRIALPELLEDLAATGVAS 313 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +LVEGGA SF++S LVD +IL + + IGE G+ +P++ F VR FG D Sbjct: 314 VLVEGGAETGASFLDSDLVDRLILVQGPVEIGEEGVRAPIDVATARCRFRLVREYRFGDD 373 Query: 350 VCLEYIGK 357 E+ + Sbjct: 374 HWYEFERR 381 >gi|332286796|ref|YP_004418707.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7] gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7] Length = 374 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 178/358 (49%), Gaps = 15/358 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL + + +T+ NP VACLIV+DG ++ G T G PHAE+ AL +A Sbjct: 3 DEGWMRQALHLAESVLYITAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAER 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GAT YVTLEPCSHYGR+PPC +I RVV+ + DP+ V G+G+ L G Sbjct: 63 GIDTAGATVYVTLEPCSHYGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + E ++ R K + LK+A S D I +A S ITG ++ Sbjct: 123 IAVTTDICTEEALAINPGFVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+S +L G+GTVLADDP++ R P++ I+D F++ ++I Sbjct: 183 GHHWRARSCVVLSGVGTVLADDPQMNVRHVE-TARPPIKAIVDTRFQVMEQARIFDG--- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAV 298 P + T DP +N+ ++ DL L+ L + + VE GA + Sbjct: 239 TPTWVFTCVSDPEKVHRLADRNVQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + + + ++ D +++Y + +++GEG PL++ + F + DV L Sbjct: 299 SGALLQAQCTDELLVYMAPVLLGEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRLR 356 >gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1] Length = 376 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 189/366 (51%), Gaps = 20/366 (5%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 1 MPSQAAILDAHYMARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ Sbjct: 61 ALRQAGELARGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E+E + +L R + K+A+S D MA S ITG Sbjct: 121 LAEAGIEVASGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA+S +L +VLAD+ +T R L +P+R+++D Sbjct: 181 AARSAVQRLRARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGR 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +LSL S + P ++VT DDP A A + DL LL L RG Sbjct: 241 LRLSLASPFFQ---AGPALVVTAVADDPRYAAAGHELLSLPGDNGQVDLGALLHALAARG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343 V +L+E GA + +F LVD L+ + +G P P+++ Sbjct: 298 VNEILLEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEM 357 Query: 344 DYFGSD 349 G D Sbjct: 358 RAVGDD 363 >gi|301336274|ref|ZP_07224476.1| riboflavin-specific deaminase [Chlamydia muridarum MopnTet14] Length = 368 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 167/349 (47%), Gaps = 5/349 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S FM A+ NP V C+IVK+G VIG G G PHAEV A+++ Sbjct: 4 LSEQQLFFMRKAVALGERGRLFAPPNPWVGCVIVKNGCVIGEGWHKGIGFPHAEVCAIQD 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + GA YVTLEPC H+GR+PPC +I+ + V V + DPD RV +G+ L + Sbjct: 64 SPCSLEGAEVYVTLEPCCHFGRTPPCVDLLIKSKVAAVYVALLDPDPRVCKKGIARLREA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E + L YL ++ + +K A S D S I+G +++ Sbjct: 124 GIPVYVGIGSKEAQASLQPYLHQRETGLPWVVMKTAASLDGQTADREGRSQWISGELARA 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S A++VG TV D+P L+ R L L E P+R+++D K+ LD+++ + Sbjct: 184 DVGKLRAESQAVIVGSRTVCLDNPRLSARQALGNLYERQPLRVVIDSLGKVPLDARVWNS 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAA 297 ++ TE + + DL++LL L +G +L+EGGA Sbjct: 244 DSGKSLLATTEQCSLEYMQRLEDLGVEVWQSSSQQVDLRELLQTLAAKGCLQVLIEGGAQ 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 + +F LV++ ++Y +G+ G P + N V+ Sbjct: 304 LHSAFWKEHLVNAGVIYWGPKFLGDQGSPMLQDLQVCLANAKSVKITEI 352 >gi|87301124|ref|ZP_01083965.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701] gi|87284092|gb|EAQ76045.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 5701] Length = 354 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 115/356 (32%), Positives = 179/356 (50%), Gaps = 11/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G TS NP V L++ +G+++G G A G PHAEV AL +AGE ARG Sbjct: 1 MERALGLAALAQGRTSPNPLVGALVLDANGLLVGEGFHAAAGRPHAEVGALAQAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDR 128 T VTLEPC H+GR+PPC++ +I GIRRV+V ++DPD RV+G+G++ L Q G ++ Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVIAAGIRRVIVAMEDPDPRVAGQGIEALRQAGAEVLVG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + +SE + A+ R R LK A+S D + S I+G S+ VH LRA Sbjct: 121 VRQSEARNLNAAFCHRLRSGRPLGILKWAMSVDGRTALPNGASQWISGPASREWVHRLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++VG GT+ DDP LT R G + P+R+++ L +++ + AP ++ Sbjct: 181 RCDAVIVGGGTLRTDDPLLTSR--GRRAIEPLRVVISRELGLPEQAQLWDQS-TAPTLVA 237 Query: 249 TENDDPVL-ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + P L + + + +L+ L RG +L E G ++A + + Sbjct: 238 HGPEAPEPDRLQLDALGVERLELAGCEPLELMEALAQRGCNQVLWECGPSLAAAALRQGC 297 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKN 358 V + + ++G +PL + L M + G D+ E G Sbjct: 298 VQRVAAVMAPKLLGGTAARTPLGDLQLNSMAMALPWREQGLSRSGDDLIWELNGPE 353 >gi|254525413|ref|ZP_05137465.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str. MIT 9202] gi|221536837|gb|EEE39290.1| riboflavin biosynthesis protein RibD [Prochlorococcus marinus str. MIT 9202] Length = 364 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 175/357 (49%), Gaps = 8/357 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + TS NP V +I+ K+G ++ G G PHAE A ++ Sbjct: 10 KWMKRAIFLASLGKNTTSPNPKVGAVILDKNGKLVSEGFHFKSGLPHAEAMAFNNLKQDV 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G T YV LEPC H G++PPC +I G+++V + ++DPD RVSG+G++ L + G+ V Sbjct: 70 KGGTMYVNLEPCCHQGKTPPCVDKVISSGLKKVYISIEDPDKRVSGKGIKLLKKAGVQVH 129 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E A++ R K++ LK A+S D I + S IT S++ VH L Sbjct: 130 LGLCKKESLELNKAFIHRNTTKKAFGVLKWAMSIDGRIALKNGKSKWITNKESRSLVHSL 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R++ DAI++G T+ D+P LT R G + P+R++ L S + ++ Sbjct: 190 RSEFDAIIIGGNTLRRDNPLLTTR--GSKNPEPLRVVFTKSLDLPSKSNLWDCGEAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L+ K + + + + + IL RG +L E G+ +A + I S Sbjct: 248 IYDSSTANESFLSRIPKCVEVEKVSSDNPELISKILAKRGCNKVLWECGSRLATAAIKSN 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 + II + + ++G +P + E+ ++ SD + IG ++C++ Sbjct: 308 CIQEIITFIAPKILGGENNMNPFGDFEFEEMDEIIKL----SDSKISLIGNDICVKG 360 >gi|288574956|ref|ZP_06393313.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570697|gb|EFC92254.1| riboflavin biosynthesis protein RibD [Dethiosulfovibrio peptidovorans DSM 11002] Length = 356 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 184/368 (50%), Gaps = 19/368 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M AL + G TS NP V C+I +DG ++G G G PHAE +AL Sbjct: 1 MKSRVEDVTYMRRALSLAMRGTGYTSPNPMVGCVIARDGEILGEGYHRRCGAPHAEREAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A GATAYVTLEPCSH+G++PPCA ++E GI R VV DPD RVSGRG++ L Sbjct: 61 MSAVGGVAGATAYVTLEPCSHHGKTPPCAPALVEAGIGRCVVATVDPDPRVSGRGIEILR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ + ++E E + ++ + +T+K A+S D + + S IT S Sbjct: 121 SAGVDVSVGVLEEECRWLNRGFIKGALAGLPWVTVKAAISLDGDMSLPDGKSKWITNGTS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + + HLLR++SDA++VG GTV ADDP LT R + SP+ +++ + + ++ Sbjct: 181 RVKAHLLRSESDAVMVGRGTVTADDPALTVR--DVPGKSPIPVVI---GGIDENRRVFLD 235 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 II T + + DL+ +L L G GV LLVEGG + Sbjct: 236 DR---CIIYT-----KRFAGLNGERVIPEKNGQVDLETVLRDLYGSGVRRLLVEGGGRII 287 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 S ++ LVD + L+ + ++G+G +P L N + D+ LE + Sbjct: 288 SSLLSDGLVDEVSLFVAPKIMGQGQTMTPGMILSSMEESMNLSLISCRGQDGDLWLEGVF 347 Query: 357 KNLCLQEL 364 C ++L Sbjct: 348 P--CSRDL 353 >gi|116072381|ref|ZP_01469648.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107] gi|116064903|gb|EAU70662.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. BL107] Length = 354 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 172/334 (51%), Gaps = 8/334 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL + G TS NP V +++ + G ++G G A G PHAEV AL +AG+ A+ Sbjct: 5 WMRRALALAGLADGHTSPNPLVGAVVLDRHGRLVGEGFHARAGEPHAEVGALAQAGDRAK 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G+ L G+ ++ Sbjct: 65 GGTLVVTLEPCCHHGRTPPCSEAVLRAGIARVVIALEDPDPRVDGGGMAQLRAAGLDVIS 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++++E A+L R R TLK A+ D ++ S I+G ++ VH LR Sbjct: 125 GVLQAEAAFQNRAFLHRVRTGRPWGTLKWAMGLDGRTALSNGESQWISGPTARRWVHQLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++SDA++VG GTV ADDP LT R G ++ P+R++L +L + +++ T+L + ++ Sbjct: 185 SKSDAVIVGGGTVRADDPLLTSR--GRRKPEPLRVVLSRSMELPVTAQLWDTSLASTLVA 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 P + + K L+ L RG +L E G +A + I Sbjct: 243 ----HGPEAQEQPFPHGPQRLLLSASEPKPLMQELANRGCNRVLWECGPELAAAAIRQGC 298 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + + + ++G +PL E V Sbjct: 299 IQEVAAVVAPKLMGGVAARTPLGELGFTAMDQVV 332 >gi|226355049|ref|YP_002784789.1| riboflavin biosynthesis protein [Deinococcus deserti VCD115] gi|226317039|gb|ACO45035.1| putative Riboflavin biosynthesis protein ribD [Deinococcus deserti VCD115] Length = 368 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 115/361 (31%), Positives = 178/361 (49%), Gaps = 17/361 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + +G TS NP V C+IV+DG V+GRG G PHAEV AL EAGE Sbjct: 8 DTEYMRLALNEAARGMGRTSPNPPVGCVIVRDGQVVGRGFHPRAGEPHAEVFALREAGEY 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+GR+PPCA ++ G+ +VV+ DP+ RV G+G L + GI + Sbjct: 68 ARGATAYVTLEPCSHFGRTPPCADALVAAGVSQVVIAALDPNPRVGGQGASRLREAGIEV 127 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITGFISK 180 + + E E + + + R + K A++ D + +TG S+ Sbjct: 128 IVGVAEEEALRQQAGFRSLVMRARPWVIYKYAMTLDGKVAALDASGRGEANGLVTGLASR 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + D I VG GTV+ DDP LT R P ++ D + S +++I+ Sbjct: 188 ARVMAWRNEVDGIAVGSGTVITDDPLLTTR-GVEGGRDPRPVVFDGQGRTSASARVIRPG 246 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V++ D +IY + L L ++L VEGG +A Sbjct: 247 A---VVVTAPGMDMSR---HEAAGAQVIYA--TQPSEALAELGRLNFSTLFVEGGPTLAG 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 S +++ LVD + + + ++G G P +P+ + + V + G D+ + + + Sbjct: 299 SLLDAGLVDEVRAFVAPKLLGAGLNPLTAPVRPMHEAQVLRDVTFESLGPDLLIRGLLND 358 Query: 359 L 359 + Sbjct: 359 I 359 >gi|78779743|ref|YP_397855.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9312] gi|78713242|gb|ABB50419.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9312] Length = 364 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 104/356 (29%), Positives = 176/356 (49%), Gaps = 8/356 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + G TS NP V +I+ K+G +I G G PHAEV A +E Sbjct: 10 KWMKRAIFLASLGKGKTSPNPLVGAVILDKNGNLISEGFHYKAGEPHAEVMAFNNLKKEV 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + YV LEPC H+G++PPC +I GI+++ + + DPD RVSG+G++ L Q GI V Sbjct: 70 KDGYMYVNLEPCCHHGKTPPCVDKVISSGIKKIYISIQDPDKRVSGKGIKLLKQAGIKVH 129 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E A++ R + ++S LK A+S D IG+ S IT S++ VH Sbjct: 130 LGLCKKESLELNKAFIYRTITEKSFGVLKWAMSIDGRIGLKNGKSKWITNKDSRSLVHSF 189 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DAI++G T+ D+P LT R GL+ P+R++ L S + ++ Sbjct: 190 RTEFDAIIIGGNTLRQDNPLLTTR--GLKNPEPLRVVFTKTLDLPPKSNLWDCDEAKTLV 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I + L + + + + + + +L RG +L E G +A S + S Sbjct: 248 IYDSSTANEKFLTNIPQCVEVEKVSSDNPELISKLLAKRGCNKVLWECGPKLATSAVKSD 307 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 ++ II + + ++G +PL + E+ ++ SD + IG ++C++ Sbjct: 308 CINEIISFIAPKILGGQTNMNPLGDFQFEEMHEIIKL----SDSQVSLIGNDICVK 359 >gi|115524816|ref|YP_781727.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisA53] gi|115518763|gb|ABJ06747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodopseudomonas palustris BisA53] Length = 383 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 154/362 (42%), Positives = 202/362 (55%), Gaps = 12/362 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M AL R +G T NP+V +IVKDG+++GRG T G PHAEV+AL AGE Sbjct: 21 DLRYMQLALALGRRGLGNTWPNPAVGAVIVKDGVIVGRGWTQPRGRPHAEVEALARAGEA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGAT YVTLEPCSH+G++PPC +IE G+ RVV ++DP+ V+G+G L GI V Sbjct: 81 ARGATLYVTLEPCSHHGKTPPCCDAVIEAGLARVVAAIEDPNPEVAGQGHAKLRAAGIKV 140 Query: 127 DRMMESEGKIFLHAYLTRQVEK-RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + HA R++ R H+ LK+A+S D+ I AG V ITG + QV L Sbjct: 141 DVGCGAVDAARDHAGHFRKIRDGRPHVILKLALSSDDKIAAAGRKRVAITGAAANAQVQL 200 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQ DAILVGIGTVLADDPELTCRL G+ SP+R++LD ++ SK++ +A P+ Sbjct: 201 LRAQCDAILVGIGTVLADDPELTCRLPGMAARSPVRVVLDRALRIPGASKLVLSARQTPL 260 Query: 246 I-IVTENDDPVLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAV 298 I E + A ++ DL +L +L RGVT L+VEGGA V Sbjct: 261 WLIAAETAEAAAAARLGAAGAQVLRLPVEPTARGLDLNAVLKLLAERGVTRLMVEGGAQV 320 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +F+ VD I L+R IG+ GIP+ PL F D + Sbjct: 321 ASTFVAQNFVDEIWLFRGSQPIGDDGIPALQTLPLTAITASPAFRVRDSQTLSPDTLTIF 380 Query: 355 IG 356 Sbjct: 381 ER 382 >gi|307945264|ref|ZP_07660600.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4] gi|307771137|gb|EFO30362.1| riboflavin biosynthesis protein RibD [Roseibium sp. TrichSKD4] Length = 376 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 153/374 (40%), Positives = 219/374 (58%), Gaps = 18/374 (4%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-----VIGRGVTAYGGCP 53 M + D RFM+AA R++R +G NP VA LIV++ V+GRG T+ G P Sbjct: 1 MAFTQMQTDLRFMAAAERYARRGLGEVWPNPPVAALIVRENENGQHVVVGRGRTSKPGGP 60 Query: 54 HAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 HAEV AL AG A+GAT YVTLEPCSHYGR+PPC+ ++E GI+RVV+ + DP+ RV+G Sbjct: 61 HAEVNALTMAGTAAKGATCYVTLEPCSHYGRTPPCSVALVEAGIKRVVIGMRDPNPRVAG 120 Query: 114 RGLQWLSQKGIIVDRMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 RG++ L + G+ V+ + + ++ R + R + LK+A+S+D IG G G V Sbjct: 121 RGIKMLEEAGVEVEVGVHEVACQELYSGFIMRITQHRPKVLLKLAISKDGFIGKKGEGQV 180 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ +S VH R+ DAI+VGIGT LADDP+LTCRL G+ E SP+R+I+D +L L Sbjct: 181 RISNPLSMRHVHGFRSTYDAIMVGIGTALADDPQLTCRLPGMAERSPVRVIIDSDARLPL 240 Query: 233 DSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGV 287 SK++ TA PV +V + P A K + II D + + L RG+ Sbjct: 241 ASKLVMTAAEVPVWLVCSSTAPAERIEALSKAGVLIIRVPTTDCGIEPSVVTSALSTRGI 300 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRR 343 T L+VEGG+ +A +F+ + LVD + + I +GEGGIP LE+ + +F V Sbjct: 301 TRLMVEGGSRIASAFLKAGLVDDMCIVTGDIEVGEGGIPVLHDLRLEDVVADPSFAKVEA 360 Query: 344 DYFGSDVCLEYIGK 357 GSD + Y+ + Sbjct: 361 GVIGSDQFI-YLRR 373 >gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1] gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1] Length = 367 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 167/355 (47%), Gaps = 12/355 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---G 64 +M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G Sbjct: 4 FYMNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+ Sbjct: 64 NDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +E + + +R + + +K A S D + + S IT ++ Sbjct: 124 DVEIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADG 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA++ IL GIGTVL D+P L R + P ++D + D+ ++K Sbjct: 184 HAWRARACTILTGIGTVLEDNPRLNVR-DQPTPRQPRIAVVDSKLDIPPDAHVLKAPSGC 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + N + L + + DL LL L RG L VE G + S Sbjct: 243 FIYTCSINQSKIEKLRALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNGS 302 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 I LVD ++ Y++ ++G G + PL+ G D+ + Sbjct: 303 LIREGLVDELLFYQAPKLLGTGAMGIANFGPLDSLEQGLPLEFHDVARMGPDLRI 357 >gi|269121379|ref|YP_003309556.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC 33386] gi|268615257|gb|ACZ09625.1| riboflavin biosynthesis protein RibD [Sebaldella termitidis ATCC 33386] Length = 363 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 189/360 (52%), Gaps = 13/360 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M AL + +G + NP V ++VKDG V+G+G G PHAEV AL+EAG+ Sbjct: 1 MDKKYMEMALEIAEKGLGHVNPNPLVGAVVVKDGTVVGKGYHGVYGGPHAEVYALDEAGK 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GA YVTLEPCSHYG++PPCA+ IIE GI+R V DP+ VSG+G++ L + I Sbjct: 61 SAEGADIYVTLEPCSHYGKTPPCAKKIIESGIKRCFVGSIDPNPLVSGKGIEMLKENDIE 120 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V +++ E A+ EK ++ LK A++ D I S I+ ++ +V Sbjct: 121 VHTGVLKEECDNINKAFFKYIKEKIPYLFLKCAITLDGKIASRNGDSKWISNETAREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R + I+VGIGTVL D+P LT R+ +P+RII+DPH K++ + II Sbjct: 181 FYRNKFMGIMVGIGTVLNDNPRLTARIE--NGVNPLRIIVDPHLKVNTELNIISNNYDKK 238 Query: 245 VIIVTENDDPVLALAFRKKN---INIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVA 299 II+T ++ A +N I I + +L L + S+L+EGG + Sbjct: 239 TIIITSENNTGTAKYSELENEFGIKFITLPDYEFSVSDILRELGRAKIDSVLLEGGEKMI 298 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 + +L+D ++ S ++G+ S + EK ++ + +G+++ +E+ Sbjct: 299 SKAFSEKLIDGGEIFISDKILGDSSGKSFISGFSTEKISDSIILRNIKYNLYGNNIGVEF 358 >gi|94265528|ref|ZP_01289276.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] gi|93453969|gb|EAT04315.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase-like [delta proteobacterium MLMS-1] Length = 374 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 190/372 (51%), Gaps = 22/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M AL +R VG T+ NP V ++VK+G V+G+G G PHAE +AL Sbjct: 1 MTAADLTYMRLALAEARKGVGKTAPNPCVGAVVVKNGRVVGKGWHRKIGQPHAEAEALRA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A GAT YVTLEPC+H+GR+PPC++ II GIRRVV + DP V+ G + L Sbjct: 61 AGEAAAGATIYVTLEPCNHHGRTPPCSEAIIAAGIRRVVYGLADPH-EVARGGAKRLESA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++ E + ++ R R + LK AVS D I A S ITG ++ Sbjct: 120 GLEVLGGVLADECRRLNLPFIKRVTCGRPWVLLKAAVSLDGRIAAATGHSQWITGPPARR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-QEHSPMRIILDPHFKLSLDSKII-KT 239 H LR QSDAILVG GTVLADDP LT RL G + P+R++LD + ++++ + Sbjct: 180 LAHRLRQQSDAILVGSGTVLADDPSLTTRLPGGRRGRDPLRVVLDSRLQTPPTARMLSQQ 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------------CRDLKKLLTILVGR 285 + A I A A ++ + DL ++L L Sbjct: 240 SPAATWIFCAPEAATERAAALEAAGARVVRLEPTPGGQSGLEPNFSGLDLWQVLRELAAN 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCV 341 GV LLVEGG V SF+ L D + + ++IG G+P +PL ++K V Sbjct: 300 GVNQLLVEGGGRVHGSFLRQNLADEAVFCIAPLLIGADGLPVVAPLNCKRVDKAPRLREV 359 Query: 342 RRDYFGSDVCLE 353 G D+ L Sbjct: 360 SSRRLGDDIMLR 371 >gi|15618780|ref|NP_225066.1| riboflavin deaminase [Chlamydophila pneumoniae CWL029] gi|15836404|ref|NP_300928.1| riboflavin deaminase [Chlamydophila pneumoniae J138] gi|16752168|ref|NP_445535.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39] gi|33242231|ref|NP_877172.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183] gi|6225949|sp|Q9Z735|RIBD_CHLPN RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|4377188|gb|AAD19009.1| Riboflavin Deaminase [Chlamydophila pneumoniae CWL029] gi|7189911|gb|AAF38776.1| riboflavin-specific deaminase [Chlamydophila pneumoniae AR39] gi|8979245|dbj|BAA99079.1| riboflavin deaminase [Chlamydophila pneumoniae J138] gi|33236742|gb|AAP98829.1| riboflavin-specific deaminase [Chlamydophila pneumoniae TW-183] Length = 376 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 173/363 (47%), Gaps = 13/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ NP V C++V++ +IG G AY G PHAE A++ Sbjct: 4 FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A G+ YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q Sbjct: 64 ASMPISGSDVYVSLEPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ESE + L YL ++ LK A S D + + S IT +++ Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AILVG TVL+DDP LT R L P+R++LD + SK+ Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFD- 242 Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 +P + VT P ++ ++ + DL K+ L + + +LVEG Sbjct: 243 -KTSPTLYVTTERCPENYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEG 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVC 351 G + S + R V+S++LY +++G+ P G L G+ + Sbjct: 302 GTTLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLK 361 Query: 352 LEY 354 + + Sbjct: 362 VVW 364 >gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans C54] Length = 386 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 181/364 (49%), Gaps = 16/364 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV AL Sbjct: 5 PSESDDLSWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALR 64 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 65 DAQARGESVAGATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLAR 124 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L Q GI + + E +++R LK+A S D + S ITG Sbjct: 125 LRQAGIAVTTGICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGP 184 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ HL RA+S +L GIGTVL DDP+LT R + P R ++D F++ D+++ Sbjct: 185 EARADGHLWRARSCVVLTGIGTVLKDDPQLTVR-SVQTPRQPRRAVVDGRFEIPEDARLF 243 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLV 292 VI+ T D +N+ ++ D DL ++ L + + V Sbjct: 244 DGG---EVIVFTARVDAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHV 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSD 349 E GA ++ + + + VD +++Y + +++G+ + P LE + + +D Sbjct: 301 EAGAGLSGALVAAGCVDELLIYMAPMLLGDAAGVVRLPLLERLDAAPRYEFIEAQRVAAD 360 Query: 350 VCLE 353 + + Sbjct: 361 LRVR 364 >gi|320102303|ref|YP_004177894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Isosphaera pallida ATCC 43644] gi|319749585|gb|ADV61345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Isosphaera pallida ATCC 43644] Length = 387 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 130/361 (36%), Positives = 187/361 (51%), Gaps = 21/361 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68 M AL + G NP V LIV+ G V+GRG G PHAEV+AL + AR Sbjct: 1 MRLALALAERGRGHVEPNPMVGALIVRGGEVVGRGWHRRFGGPHAEVEALRSLSDPALAR 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPC H G++PPC Q I+E GI RVV + DP +V+G GL L G+ + Sbjct: 61 GATLFVTLEPCCHVGKTPPCTQAILEAGITRVVAAMADPFPKVAGGGLAALRAAGVEVCH 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E+ + AYL + + R ++T K A++ D A S I+ S+ +VH LR Sbjct: 121 GLEETAARRLNAAYLKQVLIGRPYVTAKWAMTLDGKTAAATGDSRWISNERSRARVHELR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI+VGIGT LADDP LT R G +P RI+LD +L L S++++T AP+ + Sbjct: 181 GRMDAIVVGIGTALADDPLLTVRPPG--PRTPTRIVLDSQARLPLSSRLVRTIDQAPLWL 238 Query: 248 VTENDDPVLAL-AFRKKNINIIYCDCRDLKK----------LLTILVGRGVTSLLVEGGA 296 V D P L A + + + D+++ LL L G+T LLVEGG Sbjct: 239 VHRPDAPADRLSALERAGVKLFAPQVEDMERHRTSGVPIVPLLDELGREGMTHLLVEGGG 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVC 351 VA +F ++ +D++ ++ + VIG +PL F+ R + D+ Sbjct: 299 RVAGAFFDAGAIDALEVFIAPRVIGGTARFAPLLGQGRPLMAQAARFIESRLEILDGDLR 358 Query: 352 L 352 L Sbjct: 359 L 359 >gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM 6192] gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM 6192] Length = 362 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 126/362 (34%), Positives = 198/362 (54%), Gaps = 10/362 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D FM AL +R G TS NP V ++VKDG V+G G G PHAEV AL E Sbjct: 1 MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGEEARGA YVTLEPC H+GR+PPC I++ G+RRVVV DP+ +V+G+GL L++ Sbjct: 61 AGEEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + +++R R + K+A S D I + S ITG ++ Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARW 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LRA SD ++ GIGTVLADDP T R+ G + P ++LD +L + +++++ Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREG- 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 V++V D ++ + ++ R D++ + L GV +VE GA Sbjct: 240 --TVVMVGPGVDAGWRGEVERRGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAG 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 V +F+ + +VD ++++ + V+GEG + + EG E+ + G DV + + Sbjct: 298 VTGAFLEAGMVDELVVFVAPRVLGEGRGWVEGRVVEGLGEREWEVREVRRVGEDVMVRCV 357 Query: 356 GK 357 + Sbjct: 358 RR 359 >gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122] gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122] Length = 365 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 172/367 (46%), Gaps = 28/367 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D MS AL+ + T+ NP V C+IVKDG+V+G G G PHAEV AL+ Sbjct: 2 FTIEDHTHMSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E A GAT YVTLEPCSHYGR+PPCA+ +I+ + RVV + DP+ VSGRG+Q L Sbjct: 62 AKERAIGATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSA 121 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI VD ++E + A++ + LK+A S D + S IT ++ Sbjct: 122 GIEVDVGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQ 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RAQS AIL TV+ D+ LT R + L P R+ILD L Sbjct: 182 DVQAFRAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYPEKALRQPPRVILDRKQTL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTS 289 + D + ++ + +II N+ ++ +L + L + Sbjct: 242 TSDLRFFQSQSES-IIIAPSNEHFDELDWSKQ----------LELLPIFKTLAKTYSINH 290 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDY 345 L VE GA ++ S I LVD +ILY + ++G G + G + Sbjct: 291 LWVEAGATLSRSLIREGLVDELILYIAPKLMGNDGRGLLGDLGLTSLEQAIDLDIKEVRM 350 Query: 346 FGSDVCL 352 G D+ + Sbjct: 351 VGKDLRI 357 >gi|114562213|ref|YP_749726.1| riboflavin biosynthesis protein RibD [Shewanella frigidimarina NCIMB 400] gi|114333506|gb|ABI70888.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shewanella frigidimarina NCIMB 400] Length = 381 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 178/371 (47%), Gaps = 26/371 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+FD + MS A+ + T NP V C+IV +IG G G HAEV AL+ Sbjct: 3 NWSTFDTQMMSRAIALAEKGRYTTRPNPCVGCVIVYQNKIIGEGYHQRAGQGHAEVNALK 62 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G A GATAYVTLEPCSHYGR+PPCA +I + RVVV V D + VSGRG+ Sbjct: 63 MVHDNGLSAEGATAYVTLEPCSHYGRTPPCALGLINAKVARVVVAVTDANPEVSGRGITL 122 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G+ VD ++ + ++ R IT+KIA S D ++ S ITG Sbjct: 123 LREAGVEVDVGLLCEQAYDLNLGFMKRMKTGLPWITVKIAASLDGKTALSNGVSKWITGS 182 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPH 227 ++ V RA A++ G+ T+L DDP L R L E P+R++LD Sbjct: 183 AARADVQKYRASHCALITGVETILVDDPSLNVRYETLGELTTRHTKDEFFQPLRVVLDSR 242 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTIL 282 +L+ ++ ++ +P+++V+ P A ++++ + C L LLT L Sbjct: 243 ARLTATQQLF--SIQSPILLVSGCHYPESVKAEFPEHVSFLQLTCDSSGRIPLLALLTYL 300 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----F 338 S+L+E GA +A +F+ LVD ++LY++ ++G G Y Sbjct: 301 GQH-ANSVLIEAGATLAGAFVAQGLVDEVVLYQAPKILGSHGRNMLQLPDYSTMEQTPAL 359 Query: 339 MCVRRDYFGSD 349 + G D Sbjct: 360 QLIDERNVGQD 370 >gi|260575298|ref|ZP_05843298.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2] gi|259022558|gb|EEW25854.1| riboflavin biosynthesis protein RibD [Rhodobacter sp. SW2] Length = 357 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 186/356 (52%), Gaps = 12/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL + +G NP+V C+IV G V+GRG T GG PHAEV AL +AG ARGA Sbjct: 1 MAHALALAARGLGRAWPNPAVGCVIVAGGRVVGRGHTQPGGRPHAEVMALHQAGALARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+G +PPCA+ +I G+ RVV + DPD RVSG+G L GI + + + Sbjct: 61 TAYVTLEPCAHHGHTPPCAEALIAAGVARVVTALTDPDPRVSGKGHALLRAAGIAVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E +L R + +TLK+A S D I S ITG +S+ H LR Sbjct: 121 LPAEATAANAGFLKRVTQGLPFVTLKLATSLDGRIATETGESRWITGALSRRAGHALRLS 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT LAD+P+LT R G H P+RI++D + S S++ +T APV + Sbjct: 181 HDAVMVGAGTALADNPDLTARGLGAN-HQPVRIVIDSRLRHSPQSRLGQTTRTAPVWLCH 239 Query: 250 ENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 PV A+ +I+C L + L L G+T +L EGGA +A S I Sbjct: 240 TEAAPVDARQAWEATGARLIFCPATPEGHVALPEALRNLADLGLTRILCEGGAQLAASLI 299 Query: 304 NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 RL D + L+ + ++G G+ P L + G D + Sbjct: 300 RDRLADELALFGAGSLLGAEGLAAIGPLALRHLTDAPRLHLLETHPIGEDSLSRWR 355 >gi|301165384|emb|CBW24955.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase] [Bacteriovorax marinus SJ] Length = 378 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 115/375 (30%), Positives = 177/375 (47%), Gaps = 18/375 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +++ ++ G+TS NP V +IV+D I+IG G G PHAE A+ A E Sbjct: 5 IDEQYIRRCFALAKKATGMTSPNPLVGSVIVQDNIIIGEGYHQRYGEPHAEPNAINNAVE 64 Query: 66 EARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 GAT Y LEPC H + +PPC IIE I+RVV+ DP+ V+G G++ L + GI Sbjct: 65 PVEGATLYCNLEPCCHTNKQTPPCVNKIIESKIKRVVISNLDPNPYVAGNGVKKLREAGI 124 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E EG+ + ++ + +K+A + D I S I+ +++ +V Sbjct: 125 AVSVGVLEEEGRELNEVFFKYITTQKPFVHIKLAQTLDGKIATDSGDSKWISSELARERV 184 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H R + DA+L+G T+ DDP L R+ + P RIIL KLS + K+ + Sbjct: 185 HQWRKKYDAVLIGRNTLENDDPTLNIRMGVDAEGKHPFRIILCSVDKLSTEFKVFNDSAS 244 Query: 243 APVIIVTEND-----DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVE 293 A II+T + F K + II D DL LL L ++S+LVE Sbjct: 245 AKTIILTSANSLDKCSEEKIEFFENKGVRIITVEKKEDSFDLNDLLLKLGALKISSILVE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGS 348 GG +V +FI+ D + L+ +IG G ++ N + ++ G Sbjct: 305 GGQSVITAFIDQVEYDKLSLFICPKIIGNGISYYKNDKKQKMSEAIQLNISEIE-NFDGQ 363 Query: 349 DVCLEYIGKNLCLQE 363 + Y G CLQ Sbjct: 364 IIYHTYSGGQKCLQG 378 >gi|225874950|ref|YP_002756409.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum ATCC 51196] gi|225792610|gb|ACO32700.1| riboflavin biosynthesis protein RibD [Acidobacterium capsulatum ATCC 51196] Length = 380 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 118/368 (32%), Positives = 186/368 (50%), Gaps = 12/368 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D R+M AL +R ++S NP+V C++V++G ++G G Y HAE+ AL+ Sbjct: 10 PQGNEDQRWMQRALALARLSKAVSSPNPAVGCVLVREGALVGEGYHDYSRKDHAEIVALK 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG++ARGATAYVTLEPC H GR+ PC + +I G+RRVV DP+ +VSG+GL+ L Q Sbjct: 70 QAGDQARGATAYVTLEPCCHTGRTGPCTEALIAAGVRRVVAATVDPNPKVSGQGLERLRQ 129 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-----GCGSVPIT 175 GI + ESE + A+ +TLK VS D I +T Sbjct: 130 AGIETTAGIGESEARALNDAFACSMRNGHPFVTLKAGVSLDGRIAPRPGSVETGKPYFLT 189 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G + QV ++R + DA+L GI TVL DDP+L+ R + +R++LD +L LDSK Sbjct: 190 GPQALAQVQVMRHEHDALLTGINTVLTDDPQLSDRTGLPRRRPLLRVVLDSALRLPLDSK 249 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSL 290 +++TA V++ A + + + L ++L L + S+ Sbjct: 250 LVRTAQQD-VLVFCSFAPIARRQALESMGVRVEELPGKTRGRISLDEVLGRLHEMQILSV 308 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 ++E G V S + L+D ++LY + +++G GGI + G D+ Sbjct: 309 MLEAGGMVNASALADGLIDKLVLYYAPVLLGTGGISLADGIEMQQLALQRPEWTQTGPDL 368 Query: 351 CLEYIGKN 358 ++ Sbjct: 369 RFSAYLRD 376 >gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619] gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619] Length = 376 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 120/366 (32%), Positives = 187/366 (51%), Gaps = 20/366 (5%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP + DA +M+ AL +R + T NP V C+IV+DG V+G G G PHAEV Sbjct: 1 MPSETAILDAHYMARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVH 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AGE ARGA AYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP+ +V+G+GL+ Sbjct: 61 ALRQAGERARGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ GI + ++E++ + +L R + K+A+S D MA S ITG Sbjct: 121 LAEAGIEVASGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPH 227 +++ V LRA + +L +VLAD+ +T R L +P+R+++D Sbjct: 181 AARSAVQRLRASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGR 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRG 286 +L LD+ + P ++VT D + +++ + DL L+ L RG Sbjct: 241 LRLPLDAPFFQ---AGPALVVTAMGDDTRYGQAGHELLSLPGSNGQVDLLALMQALAARG 297 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRR 343 V +L+E GA + +F L+D L+ + +G P PL + Sbjct: 298 VNDILLEAGAGLVGAFAQLGLIDEYQLFVAGTFLGSQARPLLDWPLSKMSEAPRLKITEM 357 Query: 344 DYFGSD 349 G D Sbjct: 358 RAVGDD 363 >gi|218289836|ref|ZP_03494036.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius LAA1] gi|218240127|gb|EED07312.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius LAA1] Length = 371 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 190/362 (52%), Gaps = 16/362 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M AL +R G TS NP V ++V G+V+G+G G PHAEV AL AG Sbjct: 2 TEDERYMRMALEVARLGEGQTSPNPMVGAIVVNGGLVVGQGAHLMAGTPHAEVHALRMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L G+ Sbjct: 62 DAAKGATLYVTLEPCNHHGRTPPCTDAILASGVRRVVVAALDVDPRTAGLGVKRLQDAGL 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E E + + R R ++ K+A++ + + S +TG ++ V Sbjct: 122 EVSVGVLEVEARELNRHFFHRVETGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR AI VG+GTVL DDPELT R ++ P+R++ D + ++++ TA Sbjct: 182 HRLRQIIPAIGVGVGTVLTDDPELTARDLATGTRRDRQPLRVVFDTRLRTPPTARLL-TA 240 Query: 241 LLAPVIIVTEND--DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEG 294 +++ +E P + + ++ I+ R DL L+ + G +LLVEG Sbjct: 241 PGRTLLLTSERMAFSPAASRLAAQGDVRIVPVPERDGHLDLHAALSAIAAEGANALLVEG 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDV 350 G +A + + SRL+D + +Y + ++ GG+P+ VR ++ G D+ Sbjct: 301 GPTLASALLQSRLIDEVRVYLAPKLL-AGGLPAFAGAFTQSMSASVELHGVRSEWVGDDL 359 Query: 351 CL 352 L Sbjct: 360 VL 361 >gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC BAA-1200] gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC BAA-1200] Length = 374 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 13/366 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D R M AL +R TS NP V C+I + G ++G+G G PHAEV AL Sbjct: 7 NFSDTDRRHMRTALALAREGRFTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALR 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLS 120 +AGE ARGATAYVTLEPC+H+GR+PPCAQ +I G+ RVV V DP+ +V+G+GL + Sbjct: 67 QAGELARGATAYVTLEPCAHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAA 126 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + E+E + H +L+R R + LK A S D ++ S IT ++ Sbjct: 127 AGIAAECGLFEAEARELNHGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH+LRA+S A+L GIGTVLADDP LT R +P R++LD +L +K++ Sbjct: 187 ADVHILRAESCAVLTGIGTVLADDPLLTVR-GFPVVRAPARVVLDSRLRLPQTAKLLADP 245 Query: 241 LLAPVIIVTENDDPVLALAF-RKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 APV+++T DP AF R ++++ D L L +L G+ +L E G Sbjct: 246 S-APVLLLTGEADPAKHAAFARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDV 350 A ++ + + + LVD I+LY++ ++G P + ++ + GS + Sbjct: 305 ATLSGALLRADLVDEIVLYQAAKILGAPARGLFATPENPAALHAAPHWQTQSVETLGSGI 364 Query: 351 CLEYIG 356 Sbjct: 365 KWVLRR 370 >gi|269302657|gb|ACZ32757.1| riboflavin biosynthesis protein RibD [Chlamydophila pneumoniae LPCoLN] Length = 376 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 173/363 (47%), Gaps = 13/363 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ NP V C++V++ +IG G AY G PHAE A++ Sbjct: 4 FSEQQLFFMRRAIEIGEKGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQN 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A G+ YV+LEPCSH+G PPCA +I+ + RV V + DPD +V+G+G+ L Q Sbjct: 64 ASMPISGSDVYVSLEPCSHFGSRPPCANLLIKYKVSRVFVALVDPDPKVAGQGIAMLRQA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + ESE + L YL ++ LK A S D + + S IT +++ Sbjct: 124 GIQVYVGIGESEAQASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARH 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239 V LRA+S AILVG TVL+DDP LT R L P+R++LD + SK+ Sbjct: 184 DVGKLRAESQAILVGSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFD- 242 Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEG 294 +P + VT P ++ ++ + DL K+ L + + +LVEG Sbjct: 243 -KTSPTLYVTTERCPKNYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEG 301 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVC 351 G + S + R V+S++LY +++G+ P G L G+ + Sbjct: 302 GTTLHTSLLKERFVNSLVLYSGPMILGDQKRPLVGVLGNLLESASPLTLKSSQILGNSLK 361 Query: 352 LEY 354 + + Sbjct: 362 VVW 364 >gi|153005591|ref|YP_001379916.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5] gi|152029164|gb|ABS26932.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. Fw109-5] Length = 401 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 131/348 (37%), Positives = 182/348 (52%), Gaps = 5/348 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AA+R + +G TS NP+V ++VK G V+ RG A G PHAEV AL AG ARG Sbjct: 34 FMRAAVREATKGLGRTSPNPAVGAVLVKGGRVVARGHHARAGGPHAEVVALRAAGARARG 93 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 A Y TLEPC H+GR+PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V Sbjct: 94 ADLYTTLEPCDHFGRTPPCSVAVLEAGVRRVFVGSADPNPLVNGRGVARLREGGVEVVTG 153 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ + T E+R H+TLK AV+ D I + +TG ++ VH LR Sbjct: 154 VLRETCDELNAHWFTFITERRPHVTLKAAVTLDGRIATRTGDARWVTGEPARRWVHRLRD 213 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+LVG GT ADDP LT RL G + P+R++LD L D + + AP ++ Sbjct: 214 RVDAVLVGSGTARADDPRLTTRLPGGRGRDPIRVVLDTDLSLPRDLNLFRQRSAAPTLVA 273 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + + DL+ LL L RGVT LLVEGGA V F+ LV Sbjct: 274 HASARARDLGPRIELLRCRRGPGGVDLRDLLARLAARGVTHLLVEGGARVHARFLQEGLV 333 Query: 309 DSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352 D + ++ + + G GIP G + VR + G DV + Sbjct: 334 DRVAIFVAPKIAGGDGIPLVAGRGPARMADALSLADVRVERVGDDVLV 381 >gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea 34H] gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea 34H] Length = 389 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 45/384 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV--KDG--IVIGRGVTAYGGCPHAEVQALEEAGEE 66 MS A+ ++ TS NP V C++V K+G VIG G G HAEV AL EA Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60 Query: 67 ----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +GATAYVTLEPCSH+GR+PPCA+ +++ G+ V+ + DP+ +VSG GL L + Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E ++ ++ + V ++ K+A S D MA S IT ++ Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLS 231 V LRAQS AI+ G +VL D+ ++T R + L E P+RI++D +L+ Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240 Query: 232 LDSKIIKTALLAPVIIVTEND---------DPVLALAFRKKNINIIYCD---------CR 273 + + +P++I+ D + L + + Sbjct: 241 PNLALF--EHQSPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKI 298 Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-----IPSP 328 +LK LL L RG+ +L+E GA ++ +FI LV+ +ILY++ ++G G +PS Sbjct: 299 NLKALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDGKNLMEMPS- 357 Query: 329 LEEGYLEKNFMCVRRDYFGSDVCL 352 + + K G D+ + Sbjct: 358 VSKLNQAKALTISDIRMVGVDIRI 381 >gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis L2TR] gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis L2TR] Length = 375 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 127/366 (34%), Positives = 187/366 (51%), Gaps = 18/366 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD + M AL +R + T NP+V C+I V+G G G PHAEV AL AG+ Sbjct: 9 FDHQMMHRALMLARRGLMTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHALRAAGQ 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPCSH GR+PPC +IE G++RVVV + DP+ RVSG G+Q L GI Sbjct: 69 KVRGATAYVTLEPCSHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGIS 128 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +++ + +++R +R +TLK+A S D ++ S IT S++ V Sbjct: 129 VDVGVLQLAAESLNPGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQ 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKI 236 RAQ+DAIL G T+LADDP+LT R++ + P+RII+D +++ ++++ Sbjct: 189 FFRAQADAILSGAATILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARV 248 Query: 237 IKTALLAPVIIV-TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + APV +V T P + I L L+ L R + L E G Sbjct: 249 FDSP--APVWLVRTTPGKPSCHPHCHELIIAADPNGKVSLPALMVELANREINQLWTECG 306 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFMCVRRDYFGSDV 350 A +A + I +L D +++Y S ++G G PL F + R G D Sbjct: 307 ANLAGALIQQQLCDRLMIYSSGQLLGHHGRSVIDMNEPLNLAS-APRFKIIDRRQVGPDQ 365 Query: 351 CLEYIG 356 L + Sbjct: 366 RLVAVP 371 >gi|332295838|ref|YP_004437761.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense DSM 14796] gi|332178941|gb|AEE14630.1| riboflavin biosynthesis protein RibD [Thermodesulfobium narugense DSM 14796] Length = 372 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 101/358 (28%), Positives = 170/358 (47%), Gaps = 9/358 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL + TS NP V C++VKD +I +G G PHAE AL+ + Sbjct: 14 ESFMKKALDLALNGKYYTSPNPMVGCIVVKDKKIISQGYHRAYGEPHAEANALKPKYIDF 73 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GA YVTLEPC HYG++P C II GI+RV + DP+ +++G+ ++ L GI + Sbjct: 74 SGADLYVTLEPCLHYGKTPSCTSKIISSGIKRVFIATLDPNPKMNGKSVEILKYAGIEVY 133 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + + + + K A++ D S I+ S+ VH L Sbjct: 134 TGILEKEARFINRHFFKAMEKSMPWLIYKCAMTLDGKTADHNFKSKYISSVKSRKYVHEL 193 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI+VG T + DDP L RL G+Q+ R+I+DP L D + T I Sbjct: 194 RAECDAIIVGYRTAIFDDPLLNIRLKGVQKKV-NRVIIDPKAALPKDLMVFNTPNEGHTI 252 Query: 247 IVTENDDPVLAL-AFRKKNINIIYCDCRDL-KKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +V + + + ++ + ++ L+ L + + +L+EGG ++A + Sbjct: 253 LVIQKGFRNKVTDQIESQGVEVLEVEEKNFYVDLMKELFKKNLIKILLEGGGSLACHMLK 312 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 +RL+D + + + ++G P+P E + ++ G+D+ + + K Sbjct: 313 NRLIDELNFFIAPKILGGKNSPTPFSGAGFEIDQNTVVLDSLKTKKIGTDILITSLVK 370 >gi|30021491|ref|NP_833122.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] gi|29897046|gb|AAP10323.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus cereus ATCC 14579] Length = 302 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 106/294 (36%), Positives = 161/294 (54%), Gaps = 6/294 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL ++ G T+ NP V +IV D ++G G G PHAE+ A+ AGE+ Sbjct: 5 ELYMKLALENAKAMKGQTTPNPLVGSVIVNDNRIVGVGAHMKAGEPHAEIHAIRMAGEQV 64 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGAT YVTLEPCSH+GR+ PCA+ I++ GI++VVV DP+ VSGRG++ L GI ++ Sbjct: 65 RGATIYVTLEPCSHHGRTGPCAEAIVQAGIKKVVVATLDPNPLVSGRGIKILQDAGIEVL 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E K + + KR +T+K V+ D I + S IT ++ +VH + Sbjct: 125 VGVCEEESKKMNEVFNKYILTKRPFVTIKSGVTLDGKIATSSSDSKWITSTEARQEVHQI 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R ++ AILVG TV D+P LT R+ +P+RIILD ++ +++ ++ I Sbjct: 185 RNENAAILVGANTVQKDNPSLTTRIP--NGRNPIRIILDSTLRIPMEANVVTDGEAPTWI 242 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAA 297 T N +A + + +L ++L +L +GV+SLLVEGG Sbjct: 243 FTTSNHAAKKKIALENAGVKVFVTSGEKHINLHEMLDVLGQKGVSSLLVEGGGR 296 >gi|154253350|ref|YP_001414174.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans DS-1] gi|154157300|gb|ABS64517.1| riboflavin biosynthesis protein RibD [Parvibaculum lavamentivorans DS-1] Length = 372 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 144/369 (39%), Positives = 204/369 (55%), Gaps = 15/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQAL 60 +DA+FM AL + +G + NP+V C++V+D V+GRG T GG PHAE +AL Sbjct: 4 PYDAQFMKMALTLAERGLGRVAPNPAVGCVVVRDDGDGPRVVGRGWTQPGGRPHAETEAL 63 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARGAT YV+LEPCSH+G++ PCA+ +I+ G+ RVV + DP+ V+GRG L Sbjct: 64 ARAGALARGATVYVSLEPCSHHGKTGPCAEALIKAGVARVVGAIADPNPAVAGRGFAALE 123 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + + ++ + EKR +TLKIA S D I S ITG + Sbjct: 124 ANGIEVTENVCAADAHHLNEGFFLTMSEKRPLVTLKIASSLDGYIATHEGHSQWITGDRA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + + HLLRA DAI+VG T + DDPELTCRL GL + SP+RII D +L L SK+++ Sbjct: 184 RERGHLLRATHDAIMVGSATAIVDDPELTCRLPGLGDRSPIRIIADGRLRLPLTSKLVRD 243 Query: 240 ALLAPVIIVT-ENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293 A PV I+T D AF + +I + +++ L + RGVT LLVE Sbjct: 244 ASKTPVWILTLPGGDGQRRKAFEDCGVTLIEVEAGEGGIMNMRAALEQIAARGVTRLLVE 303 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349 GG+ +A S + SRLVD I +R+ +IG G P+ +++ F G D Sbjct: 304 GGSRLAASLVLSRLVDRIEWFRAPKLIGGDGYPAVSALGVKKLDGAPAFDLRETVALGED 363 Query: 350 VCLEYIGKN 358 Y+ +N Sbjct: 364 SLSSYVIRN 372 >gi|269958267|ref|YP_003328054.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel] gi|269848096|gb|ACZ48740.1| riboflavin biosynthesis protein [Anaplasma centrale str. Israel] Length = 365 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 136/352 (38%), Positives = 191/352 (54%), Gaps = 7/352 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D RFMS ALR +R +G T NP+V C+I G ++GRG TA GG PHAEV AL AGE Sbjct: 4 DERFMSIALRLARRGLGNTYPNPTVGCVITNGAGSIVGRGWTAMGGRPHAEVVALRHAGE 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A G+TAYVTLEPC H G++ PC +I G+RRVV+ DPD RVSG+G + LS+ G+ Sbjct: 64 AAAGSTAYVTLEPCCHRGQTGPCTAALINAGVRRVVIAALDPDERVSGKGAKSLSEAGVE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +++ + + + + R +T+K+A + D I + IT +++ VH Sbjct: 124 VKLGVLQQQAEELNAGFFYSKTRSRPFVTVKLATTLDGKISLPSGDERWITNELTRKWVH 183 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P Sbjct: 184 KQRAMHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLRAHHKVVATSDVVP 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFI 303 I T+ND+ A R + L + ++ L G+T L VEGG + + Sbjct: 244 TYIATDNDNHETLCAARYLKVG---GKGDFLARTMSALTEELGITRLFVEGGGVLVTELL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 RLVD I R+ V G G S L +F V+ F D + Sbjct: 301 KRRLVDQFIWCRAAKVCGTGAAESILSLDA-RCHFSRVKTLTFMGDTVEVFR 351 >gi|296123695|ref|YP_003631473.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM 3776] gi|296016035|gb|ADG69274.1| riboflavin biosynthesis protein RibD [Planctomyces limnophilus DSM 3776] Length = 401 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 180/388 (46%), Gaps = 32/388 (8%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQA 59 M + DA M AL +R VG NP+V ++V + ++G G G PHAEV A Sbjct: 1 MRFPNPDAV-MEYALMLARRGVGFVEPNPAVGAVVVDEHLQLLGEGWHEKFGGPHAEVHA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AGE+ARGAT Y TLEPCSH+G++PPCA +I GIR V V DP VSG+G++ L Sbjct: 60 LAKAGEKARGATIYTTLEPCSHFGKTPPCADALIAAGIRHVETAVIDPAAHVSGQGIEKL 119 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 Q GI + + + L ++ Q R + K A++ D I S I+ Sbjct: 120 RQAGITVNVGRCADKARELLAPFVAFQCANRPWVHAKWAMTLDGKISTKTGHSHWISSEA 179 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSK 235 S+ VH LR + DAI+VGIGTVL DDP+L RL +P RI+LD +S S+ Sbjct: 180 SRRTVHELRGRVDAIVVGIGTVLVDDPQLNVRLPEDWKGPRRTPARIVLDSRLSISPHSQ 239 Query: 236 IIKTALLAPVIIVT-----------ENDDPVLALAFRKKNINIIYCDCRD---------- 274 +++TA P I+ T E D + C Sbjct: 240 LVQTARKIPTIVATIGPEHLQMAEREADWQQRRQVLEAAGCQVWSLPCGSTDIGLAHHPC 299 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-- 332 L LL + G+ LLVEGGA + SF++ L+D + Y + ++G SP+ Sbjct: 300 LIHLLDKMRAAGMAHLLVEGGARILGSFLDLDLIDEVHAYIAPKLVGGSAAASPIAGKGR 359 Query: 333 ---YLEKNFMCVRRDYFGSDVCLEYIGK 357 + + F D I + Sbjct: 360 MTIFDGEEFASGEFTTIDKDAYFHGIRR 387 >gi|240103311|ref|YP_002959620.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus gammatolerans EJ3] gi|239910865|gb|ACS33756.1| Riboflavin biosynthesis protein ribD (ribD) [Thermococcus gammatolerans EJ3] Length = 408 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 118/356 (33%), Positives = 179/356 (50%), Gaps = 23/356 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S+ D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E Sbjct: 48 TMSNEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGKVIGVGWHKRFGEKHAEVNAIE 107 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP+ VSGRG++ Sbjct: 108 DAKRKGHDVRGATMYVTLEPCSHWGKQPPCADRIIREGFKRVVVAMVDPNPLVSGRGIEK 167 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + + GI + ++E E + ++ +K +++K+A++ D I S ITG Sbjct: 168 MKKAGIEVEVGVLEDEARKLNEIFIKYVTKKMPFVSIKLALTLDGFIATETGSSQWITGE 227 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDS 234 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + Sbjct: 228 KARQKVQELRRRHMAIMVGSGTVLADNPRLNCRLENCPEK--IKVILDRSGRVAKAIREG 285 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + VI TE P L + + ++L L G+ S+L+EG Sbjct: 286 RKFRLFEDGRVIFFTEK--PELFEGIAEAY------PITEPGEILRKLGELGIDSVLIEG 337 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFG 347 G + F++ D L+ + G G P +E+ + G Sbjct: 338 G-RITCQFLSH--ADKFYLFYGPKLFGNGIKPFECLKVEDANEAPVLRIDSIERLG 390 >gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus taiwanensis LMG 19424] gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase [Cupriavidus taiwanensis LMG 19424] Length = 371 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 181/354 (51%), Gaps = 17/354 (4%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76 + T+ NP V C+++KDG VIG+G T G HAE+QA+++A G + GATAYVTL Sbjct: 19 RGMFNTTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTL 78 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135 EPCSH+GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L GI + ++E E + Sbjct: 79 EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEAR 138 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 +++R + +K+A S D + S ITG +++ H RA++ AIL Sbjct: 139 DLNIGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK---TALLAPVIIVTEND 252 GIGTV D+P LT R P R+++D ++ LD++I+ PV++ + Sbjct: 199 GIGTVRDDNPALTVR-AFATPRQPQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVE 257 Query: 253 DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 D A + ++ +L+++L L RG+ L VE G + S + Sbjct: 258 DRQRQRALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 D +++Y + ++G+ +P PL + F G D+ L + Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLARLQDAEQFRWHEVRQIGDDLRLIARRND 370 >gi|160895274|ref|ZP_02076046.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50] gi|156863153|gb|EDO56584.1| hypothetical protein CLOL250_02834 [Clostridium sp. L2-50] Length = 336 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 111/333 (33%), Positives = 163/333 (48%), Gaps = 14/333 (4%) Query: 34 LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 +IVKDG +IG G G HAE A E+A GA YVTLEPC HYG+ PPC II Sbjct: 1 MIVKDGRIIGEGYHRRYGELHAERDAFAHLTEDAAGAEMYVTLEPCCHYGKQPPCVNAII 60 Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152 E I RV V DDP+ VSG+G Q L GI ++ +++ E + V K ++ Sbjct: 61 EHKISRVYVGSDDPNALVSGKGYQILRDAGIEVITHVLKEECDSLNPVFFHYIVNKTPYV 120 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 +K A++ D I S ITG ++ V R I+VG TV+ DDP LTCR Sbjct: 121 VMKYAMTMDGKIATYSGKSKWITGEEARAHVMEQRNALTGIMVGSETVIKDDPALTCRRA 180 Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYC 270 G +P+RII D ++ +DS+I++TA P I+ T D + II Sbjct: 181 G--GRNPVRIICDSRLRIPMDSQIVRTASEVPTILATIQSEDQTDKKQKLIGAGVEIIET 238 Query: 271 DC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + DL++L+ L R + +L+EGG + S + + +V + +Y + + G Sbjct: 239 ENVDGHVDLQELMRQLGARNIDGILLEGGGTLNESALKAGIVKEVDVYIAPKIFGGSAGY 298 Query: 327 SPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 +P+ +E F FG+D+ L+Y Sbjct: 299 TPVGGMGVESPEEAYPFELGSVQRFGADIMLQY 331 >gi|123966659|ref|YP_001011740.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9515] gi|123201025|gb|ABM72633.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9515] Length = 368 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 9/355 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M A+ + G T+ NP V +I+ K+G +I G + G PHAE A Sbjct: 7 IDIKWMKRAIYLASLGKGRTNPNPMVGAVILDKNGNLISEGFHSKSGMPHAEAMAFNNLK 66 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AR YV LEPC H+G++PPC II GI++V V ++DPD RVSG+G++ L GI Sbjct: 67 KNARDGILYVNLEPCCHHGKTPPCVDKIISFGIKKVFVSIEDPDKRVSGKGIKLLKDSGI 126 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E E +++ R + ++ LK A+S D +G+ S IT S++ V Sbjct: 127 EVHLGLCEKESTELNKSFIHRNITNNAYGVLKWAMSMDGRVGLKNGKSKWITNKDSRSLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA DAI++G T+ DDP LT R G + P+R++ L S L Sbjct: 187 HSHRACFDAIVIGGNTLRKDDPLLTSR--GRRNPEPLRVVFTKTLDLPEKSNFWDFNLAK 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++ + L + + I + L +L +G ++L E G +A S I Sbjct: 245 TLVVYDSSCADKNFLKRIPEGVEIEELSSDNPILLSNLLAKKGCNNVLWECGPKLATSAI 304 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + + ++ + + ++G +P + N ++ G D+ ++ Sbjct: 305 KAGCIQELMTFIAPKILGGISSMNPFSDFEFTDMDQVFNLCKSEINFIGDDIFVK 359 >gi|284045160|ref|YP_003395500.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM 14684] gi|283949381|gb|ADB52125.1| riboflavin biosynthesis protein RibD [Conexibacter woesei DSM 14684] Length = 374 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 15/365 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D ++ AL + G S NP V +I +DG V+ G + G PHAEV+A+ Sbjct: 4 PTTDTDRLHLARALELAAQGRGRVSPNPMVGAVITRDGEVVAEGWHSEYGAPHAEVEAIA 63 Query: 62 EAGE-EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ + GAT YV+LEPC H G+ PPC I+ GIRRVVV DDP + SGRGL L Sbjct: 64 AAGDADLSGATLYVSLEPCCHTGKQPPCTDAILAAGIRRVVVASDDPTEKASGRGLGILR 123 Query: 121 QKGI---IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 +G+ + + + ++ + + R + K A++ D + S I+ Sbjct: 124 DEGVDVAVAGGELAARARLLNQPFRKQARTGRPWVLFKSAMTLDGKVATRAGDSKWISST 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S+ + H RA+ DA+ VGIGT LADDP+LT R+ G+ P R++ D ++ LDS+++ Sbjct: 184 QSRERAHHWRAECDAVAVGIGTALADDPQLTARIPGV-ARQPRRVVFDSLARVPLDSQLV 242 Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKK----LLTILVGRGVTSLLV 292 + A P+ +V P A A +I + L L GV S+L+ Sbjct: 243 QAAADIPLTVVVSRAAPRTATDALETHGAEVIVATGANEPARVVSALDQLGAVGVASILL 302 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFG 347 EGG +A +F+++ +D + L+ + IV+G PLE +E +R D G Sbjct: 303 EGGPRLAGAFLDAGEIDELRLFLAPIVLGGRTARDPLEGEGVETISEALRALTLDCDRVG 362 Query: 348 SDVCL 352 D+ + Sbjct: 363 EDLLV 367 >gi|57640359|ref|YP_182837.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis KOD1] gi|57158683|dbj|BAD84613.1| riboflavin biosynthesis protein RibD [Thermococcus kodakarensis KOD1] Length = 353 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 175/331 (52%), Gaps = 20/331 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +FM AL ++ G T+ NP V +IVKDG +IG G G HAE+ A+E+ Sbjct: 1 MRDEDEKFMRLALELAKRGEGWTNPNPMVGAVIVKDGKIIGVGWHRKFGEKHAEINAIED 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV ++DP+ V+G+G++ + Sbjct: 61 AKAKGYDVRGATMYVTLEPCSHWGKQPPCADRIIQEGFKRVVVAMEDPNPLVAGQGIEKM 120 Query: 120 SQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI V+ + E +L K +++K+A++ D I S ITG Sbjct: 121 RKAGIEVEVGLLEEEARKLNEIFLKYITTKLPFVSIKLALTLDGFIATETGSSKWITGEK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD---SK 235 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + + Sbjct: 181 ARQRVQELRRKHMAIMVGSGTVLADNPRLNCRLENCPEK--VKVILDRSGRVADEMRKGR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + VI TE + +A + K+L L G+ S+LVEGG Sbjct: 239 KFRLFEDGRVIFFTEKPEKFKGIAEAY--------PITEPAKILKKLGELGIDSVLVEGG 290 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 +A F++ L D + L+ + G G P Sbjct: 291 -RIACQFLS--LADKLYLFYGPKLFGRGIKP 318 >gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Herbaspirillum seropedicae SmR1] gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase protein [Herbaspirillum seropedicae SmR1] Length = 354 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 117/354 (33%), Positives = 181/354 (51%), Gaps = 17/354 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ AL + + + T+ NP V C+IVKD +IG G T G HAE+QA+ +A G + Sbjct: 1 MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGAT YVTLEPCSH+GR+PPCA +I G+ RVV + DP+ V+G+GL L GI + Sbjct: 61 RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + +L R R + +K A S D + S ITG +++ H+ Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ AI+ GIGT+ DD +LT R P RI++D +S ++++I+ Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIE-TPRQPRRIVIDSKLIVSPEARVIQGGN---TW 236 Query: 247 IVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + T DD A + +I DL L+ L R + L VE GA + + Sbjct: 237 VFTATDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGAL 296 Query: 303 INSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + VD +++Y + +IG+G +P PLE+ + G+D+ + Sbjct: 297 LREGCVDELLVYLAPSLIGDGRNMFELP-PLEDLSGKIGIRFHEVKQVGADLRI 349 >gi|88809077|ref|ZP_01124586.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805] gi|88787019|gb|EAR18177.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 7805] Length = 372 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 181/362 (50%), Gaps = 14/362 (3%) Query: 3 VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQ 58 V+ D R+ M AL + G TS NP V +++ G ++G G A G PHAEV Sbjct: 4 VADADQRWIPWMRRALELAALADGYTSPNPLVGAVVLDPSGTLVGEGFHARAGEPHAEVG 63 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AG+ ARG T VTLEPC H+GR+PPC +I+ GI RVVV + DPD RV+G GLQ Sbjct: 64 ALAQAGDAARGGTIIVTLEPCCHHGRTPPCTDALIKAGIARVVVALTDPDPRVAGGGLQR 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ ++ ++E+E +A++ R R LK A+S D + S I+G Sbjct: 124 LRDAGVEVISGVLEAEAAQQNYAFVHRVRTGRPWGLLKWAMSLDGRTALPNGASQWISGS 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH LRAQ DA++VG GTV ADDP LT R GL+ P+R++L L ++I Sbjct: 184 TARTWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRRLDLPDQAQIW 241 Query: 238 KTALLAPVIIVTENDDPVLAL-AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + +AP ++V D P A + + L+ +L RG +L E G Sbjct: 242 DQS-VAPTLVVHGQDAPAEARDRLEALGLQREVLPACGPESLMAVLAQRGCNRVLWECGP 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVC 351 +A + + V + + ++G +PL + +R+ D+ Sbjct: 301 ELAAAALQQACVQELAAVIAPKLLGGEPARTPLGHLGFQAMEEVVVLQGLRQQRLTDDLL 360 Query: 352 LE 353 L+ Sbjct: 361 LQ 362 >gi|257066652|ref|YP_003152908.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM 20548] gi|256798532|gb|ACV29187.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii DSM 20548] Length = 357 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 169/353 (47%), Gaps = 20/353 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M +R G TNP V +++K+G +I +G C HAE+ E A GA Sbjct: 7 MRECFDLARKGAGKVLTNPMVGAILIKNGEIIAKGYHKSNTCDHAEIDCFNNLKESAEGA 66 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T V LEPCSH+G+ PPC +I+ ++RVV+ D + +V GL L + GI ++ + Sbjct: 67 TLIVNLEPCSHFGKHPPCVDEVIKRKVKRVVIANLDTNPKV--DGLSKLKEAGIEVITGV 124 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E EG+ + R + LK A S D I A S IT S+ VH LR++ Sbjct: 125 LEDEGRKLNEKFFFNMENNRPLVALKYAQSLDGKIATASFDSKWITNEESRAYVHKLRSE 184 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAILVG T+ D+P LT R+ G +P RIIL + D ++ + I T Sbjct: 185 YDAILVGANTLRQDNPRLTSRIEG--GVNPYRIILSDKLDIDKDREVFRENADKKTYIAT 242 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D + N II C + DLK LL L R + S+LVEGG+ + +SF+ Sbjct: 243 ISDKDI------DINAEIIRCKEKDGRVDLKDLLDKLYERNIGSVLVEGGSIINNSFLEE 296 Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353 LVD I + + I++ G + + EG K F FG+DV E Sbjct: 297 DLVDKIYQFMAPIIVSGLDSRSAFIGEGAKVIKDAKRFSIDDIKRFGTDVMFE 349 >gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase [Oxalobacteraceae bacterium IMCC9480] Length = 363 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 17/360 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + D + M+ AL ++ + +T+ NP V C++V+DG+V+G G T G HAE+QAL +A Sbjct: 4 ANDQQGMALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQALADAQ 63 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G GAT YVTLEPCSH+GR+PPCA II G+ RVV + DP+ V+G GL+ L Sbjct: 64 ARGNSVTGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLERLRA 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++ + +R + + +K A S D + S IT ++ Sbjct: 124 AGIAVTTEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITAAPAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 + H+ RA++ A+L GIGTV ADDP+LT R P RI++D ++ L ++I++ Sbjct: 184 DDGHVWRARACAVLTGIGTVKADDPQLTVR-AVATPRQPRRIVIDSRLEIDLQARILQD- 241 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 APV +V D A +I DL L+ L R + L VE G Sbjct: 242 --APVWVVCAQADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAGF 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + S + VD ++LY + +IG+ +P+ L + + G D+ + Sbjct: 300 KLNGSLLREGCVDELLLYLAPSLIGDAQGLFDLPA-LTSLSGKTGLVFHDVKQIGPDLRI 358 >gi|163759204|ref|ZP_02166290.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica DFL-43] gi|162283608|gb|EDQ33893.1| riboflavin-specific deaminase / reductase [Hoeflea phototrophica DFL-43] Length = 379 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 168/364 (46%), Positives = 225/364 (61%), Gaps = 10/364 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI----VIGRGVTAYGGCPHAEVQ 58 V + D RFM+AA+R +RWH G T +NPSVA LIV++ ++GRGVTA GG PHAE Q Sbjct: 15 VDALDRRFMAAAIRLARWHQGRTGSNPSVATLIVREINDEPVIVGRGVTAVGGRPHAEPQ 74 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAG+ ARGATAYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RVSGRG Q Sbjct: 75 ALAEAGDLARGATAYVTLEPCAHHGRTPPCAEALVSAGVSRVVAAASDPDDRVSGRGYQI 134 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L I + + ++ E L YLTR+++ R H+TLK+A+S++ IG G V ITG Sbjct: 135 LRDARIEVEENVLAEEAARDLAGYLTRRMKNRVHVTLKLALSRNGKIGRRDGGQVLITGE 194 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +S QVH LRAQ+D IL+GIGT L DDP LTCR+ GL++ SP+R++LD KL + SK++ Sbjct: 195 VSNRQVHALRAQADVILIGIGTALNDDPSLTCRIEGLEDRSPIRLVLDTQLKLPVASKLV 254 Query: 238 KTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 +TA P+ I T D + I C+ D L +LL L RG++S+LV Sbjct: 255 RTAREVPLWIATSAAQDHPARAGLAAAGADFIACETHDGQIALPELLEDLAARGLSSVLV 314 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 EGG VA +F+ LVD +IL QI I + +P G + F FG+D Sbjct: 315 EGGEQVAEAFLAEGLVDRLILLTGQIDIEGDAVDAPFAPGIVPPGFRKTSSMTFGADHMD 374 Query: 353 EYIG 356 E+ Sbjct: 375 EFER 378 >gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans OS217] gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] Length = 378 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 121/377 (32%), Positives = 183/377 (48%), Gaps = 25/377 (6%) Query: 1 MP-VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ- 58 MP S FD MS A++ + T NP V C+IVKDGI + G G HAEV Sbjct: 1 MPSWSKFDIEMMSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNA 60 Query: 59 --ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AL+ A A GATAYVTLEPCSH+GR+PPCAQ ++E G+ +VVV + D + +V+G+G+ Sbjct: 61 LAALKSANLSAIGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L + GI + +++++ ++ R +T+K+A S D ++ S IT Sbjct: 121 AMLREAGIAVEVGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILD 225 G S+N V LRA+S A++ GI TVLADDP L R L + H P+RI+LD Sbjct: 181 GDASRNDVQKLRARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLD 240 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTIL 282 +L+ D ++ ++ +P+I+V+ P + D L L L Sbjct: 241 SKARLTADKRLF--SITSPIILVSTQAYPETVIFPAHVQCLQFAPDNDGRVPLISLFHHL 298 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----F 338 + +L+E GA +A + L D + LY++ ++G G Y + Sbjct: 299 G-KSYNQVLIEAGATLAGKVLELGLGDELYLYQAMKILGSHGRNLVQLPDYQAMDDIPSL 357 Query: 339 MCVRRDYFGSDVCLEYI 355 G D + Sbjct: 358 QLKDSRQLGEDRRYIFR 374 >gi|254486598|ref|ZP_05099803.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101] gi|214043467|gb|EEB84105.1| riboflavin biosynthesis protein RibD [Roseobacter sp. GAI101] Length = 356 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 129/354 (36%), Positives = 188/354 (53%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL R G NP+V C+IV+ ++GRG T GG PHAE +AL +AG +A GA Sbjct: 1 MALALSLGRRGQGTVWPNPAVGCVIVQGDRIVGRGWTQPGGRPHAEPEALAQAGAQAVGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC+H G++PPCAQ +I+ + RVV+ D D RVSG+G+ L GI + + Sbjct: 61 TVYVTLEPCAHTGKTPPCAQALIDAQVARVVIACADSDPRVSGKGIAMLQAAGIAVDTGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E + +L+R R +TLK+A S D I A S IT ++ VH +RA+ Sbjct: 121 LEDEARKDHIGFLSRIDIARPMVTLKLASSFDGRIATATGESQWITAGPARRLVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT DDP LT R G+ P RI++ L L K+ +TA L PVI+ Sbjct: 181 HDAVMVGGGTARQDDPSLTVRDIGIT-RQPARIVVSSRLDLPLSGKLAQTAALIPVILCH 239 Query: 250 -ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + DP L +++ +I C R D +L L G+T + EGG +A S + Sbjct: 240 ATSADPHLVTTWQQLGATLIPCATRAGQLDPADILRKLADHGLTRIFCEGGGGLAASLLQ 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + LVD ++ + + + IG G+P+ L + F G D+ + Sbjct: 300 ADLVDHLVGFTAGLAIGADGLPAIGPLGLSQLGKAPRFSLEYTRAIGPDILHSW 353 >gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 374 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 179/334 (53%), Gaps = 14/334 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D R M A++ ++ T+ NP+V C+I + ++G G G PHAEV AL++ Sbjct: 2 FTHLDTRLMLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI +V+ + DP+ V+GRG++ L + Sbjct: 62 AGTLAKGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + ++ +K + LK+A S D +A S ITG ++ Sbjct: 122 GIDVQVGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL TV+ADDP L R + L E P+R+I+D +L Sbjct: 182 DVQRHRARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTS 289 + ++ ++ TE D + + + DL +L+ L G+ Sbjct: 242 TPAYQLFHLPGK-TILARTEEGDEDWPESVSQWVVPTRQNSQQIDLTELMRQLAEAGINH 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + VE GA +A ++++LVDS+ILY++ ++G Sbjct: 301 IWVEAGAGLAGGLLDAQLVDSLILYQAPKLMGAD 334 >gi|258510931|ref|YP_003184365.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477657|gb|ACV57976.1| riboflavin biosynthesis protein RibD [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 371 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 187/363 (51%), Gaps = 18/363 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M AL +R G TS NP V ++V G V+G+G G PHAEV AL AG Sbjct: 2 TEDERYMRMALEVARLGEGQTSPNPMVGAIVVNGGRVVGQGAHLMAGTPHAEVHALRMAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A+GAT YVTLEPC+H+GR+PPC I+ G+RRVVV D D R +G G++ L + GI Sbjct: 62 DAAQGATLYVTLEPCNHHGRTPPCTDAILATGVRRVVVAALDVDPRTAGLGVKRLQEAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E+E + + R R ++ K+A++ + + S +TG ++ V Sbjct: 122 EVTVGVLEAEARELNRHFFHRVTTGRPYVVYKVAMTLSGHVAASSGHSQYVTGLAAREDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR AI VG+GTVL DDPELT R ++ P+R++ D + ++++ A Sbjct: 182 HWLRQIIPAIGVGVGTVLTDDPELTARDLAAGTRRDRQPLRVVFDTRLRTPPTARLL--A 239 Query: 241 LLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVE 293 +++T P + ++ I R DL L+ + G +LLVE Sbjct: 240 APGRTLLLTSERMASAPAARRLAEQGDVRIAPVAERDGHLDLHAALSAIAAEGANALLVE 299 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSD 349 GG +A + + SRL+D I +Y + ++ GG+P+ VR D+ G D Sbjct: 300 GGPTLASALLKSRLIDEIRVYLAPKLL-AGGLPAFAGAFTQGMAEAVELHGVRSDWVGDD 358 Query: 350 VCL 352 + + Sbjct: 359 LVV 361 >gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 378 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 20/365 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ A + +R T+ NP+V C+I++D V+G G G PHAE+ AL AG Sbjct: 4 DEFYLALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAM 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAY+TLEPC+HYG +PPC + +I GI RVV + DP+ +V+GRGL L Q I + Sbjct: 64 AYGATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + ++ +L R I +K+A S D MA S IT ++ V Sbjct: 124 RHSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDS 234 RA+SDAIL TVLAD+P L R L P+++I+D +++ Sbjct: 184 FRAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFH 243 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLL 291 +IIK+ + + DD + + + ++ DL L+ +L R + S+ Sbjct: 244 RIIKSNG-TTWLARIQPDDKIWPRWVEQIQLPVLSRQDILRIDLMALMILLGKRHINSVW 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFG 347 VE GA +A S + + LVD +ILY S ++G+ P LE N + G Sbjct: 303 VEAGANLAGSLLLAGLVDELILYMSPKLLGDKARPLCLLPGLERLSDALNCKLLNIRQVG 362 Query: 348 SDVCL 352 D+ + Sbjct: 363 PDIRI 367 >gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16] gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16] Length = 371 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 182/354 (51%), Gaps = 17/354 (4%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTL 76 + +T+ NP V C++VKDG VIG+G T G HAE+QA+++A G + G+TAYVTL Sbjct: 19 RGMFITTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTL 78 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGK 135 EPCSH+GR+PPCA ++ G+ RVV ++DP+ VSGRGLQ L + G+ + ++E E + Sbjct: 79 EPCSHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEAR 138 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 +++R + +K+A S D + S ITG +++ H RA++ AIL Sbjct: 139 DLNIGFVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILT 198 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL---LAPVIIVTEND 252 GIGTV D+P LT R P R+++D ++ LD++I+ PV++ + Sbjct: 199 GIGTVRDDNPALTVR-AIATPRQPQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVE 257 Query: 253 DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 D A + ++ +L+++L L RG+ L VE G + S + Sbjct: 258 DRERQRALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCA 317 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 D +++Y + ++G+ +P PL F G D+ L + Sbjct: 318 DELLIYLAPKLLGDAQGMFNLP-PLARLQDAAQFRWHEIRQIGDDLRLIARRND 370 >gi|84687686|ref|ZP_01015559.1| riboflavin biosynthesis protein RibD [Maritimibacter alkaliphilus HTCC2654] gi|84664269|gb|EAQ10760.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2654] Length = 367 Score = 318 bits (815), Expect = 9e-85, Method: Composition-based stats. Identities = 140/359 (38%), Positives = 188/359 (52%), Gaps = 11/359 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G NP+V C+IV ++GRG T GG PHAEV AL +AGE Sbjct: 3 DERFMDLALSLGRRGLGSVWPNPAVGCVIVNGARIVGRGWTQPGGRPHAEVVALAQAGEA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGATAYVTLEPCSH+G++PPCA +I GI RVVV + DPD RV+GRG+ L GI + Sbjct: 63 ARGATAYVTLEPCSHHGQTPPCAVALISAGIARVVVALGDPDNRVNGRGIAMLRAAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V + E+E + +L+R R +TLK+A S D I A S ITG ++ QVH Sbjct: 123 VTGLGEAEARADQVGFLSRVERGRPMVTLKLAASLDGRIATATGESQWITGPEARRQVHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R DA++VG GT ADDP LT R G + P+R++L H + LDS + +TA PV Sbjct: 183 ERMIHDAVMVGAGTARADDPSLTVRGLGAR-RQPVRVVLSRHLDIPLDSVLARTAKEVPV 241 Query: 246 IIVTENDDPV-LALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ + P + A+ I D+ L L G+T + EGG +A Sbjct: 242 WLIHGDRAPDGVVAAWEGLGARCIAVPVVLGRIDVAAALAALGAAGLTRVFCEGGGGLAA 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 S + LVD + + + I +G G PS + V G DV + Sbjct: 302 SLLAEGLVDEYVGFTAGIALGAEGWPSIAAMGVGALADAPRLELVELRAIGGDVLHRWR 360 >gi|291295639|ref|YP_003507037.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279] gi|290470598|gb|ADD28017.1| riboflavin biosynthesis protein RibD [Meiothermus ruber DSM 1279] Length = 384 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 23/374 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R++ AL+ + G T NP V ++VK+G ++G G G PHAEV AL +AG Sbjct: 9 ALDERYLRRALQLAERGRGHTHPNPLVGAVLVKNGRIVGEGYHPRAGEPHAEVFALHQAG 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YV+LEPC H+GR+PPC+ ++E G+ RVVV DP+ + + GL+ L G+ Sbjct: 69 EEAQGATLYVSLEPCDHHGRTPPCSLALLEAGVGRVVVAARDPNPK-AQGGLERLRSAGV 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E+E + + +R + K A+S D + + ++ +S+ Sbjct: 128 AVELGLLEAEARAQNEVFFHALRRRRPFVLWKAALSLDGQVATRSGHAAWVSNALSRRVA 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSLD 233 R A++VG+GTVLADDP+LT R + P++++LD + Sbjct: 188 QGYRQWLPAVMVGVGTVLADDPQLTVREPDFRAFPHLLEPPPLRDPLKVVLDTEARTPPG 247 Query: 234 SKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285 +++ + ++V + ++ L+ L L + Sbjct: 248 ARLFAPGPRGEPARVAVLVGAGAPAARIRVLERHGATVVELPREGGRVSLEAALAWLWEQ 307 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NFMCVR 342 GV +L+EGG +A + + VD + L+ + ++GEG G G +++ R Sbjct: 308 GVDGVLLEGGPTLAGALLRKGWVDKVALFLAPKLVGEGRGALLGFAAGRMDEALGLETRR 367 Query: 343 RDYFGSDVCLEYIG 356 + D+ LE Sbjct: 368 LELLEGDIWLEAYP 381 >gi|330815405|ref|YP_004359110.1| Putative deaminase [Burkholderia gladioli BSR3] gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3] Length = 384 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 124/364 (34%), Positives = 191/364 (52%), Gaps = 21/364 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + D +M+ AL + + T+ NP V C+IVK GI+IG G T G HAEV+A+++A Sbjct: 18 ALDRAWMARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDAR 77 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG L + Sbjct: 78 ARGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E + +++R R + +K+A S D + G S ITG ++ Sbjct: 138 AGIEVRGGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAAR 197 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H RA++ +IL GIGTV DDP+L R P R+++D L +++++ A Sbjct: 198 ADGHAWRARACSILTGIGTVRGDDPQLNVR-GIDTPRQPRRVLIDGRLDLPHEARLM--A 254 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEG 294 P++ E D P A A + DL +L L RG L VE Sbjct: 255 GAPPLVFCGELDAPARARADALRARGAEVVSLANARGSVDLAAVLAELGCRGDNELHVEA 314 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLE-EGYLEKNFMCVRRDYFGS 348 G ++ + + + LVD +++Y + ++G +P+ E ++ F V R G Sbjct: 315 GRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPVSLESRVKLRFHDVER--VGE 372 Query: 349 DVCL 352 D+ + Sbjct: 373 DLRI 376 >gi|154491828|ref|ZP_02031454.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC 43184] gi|154088069|gb|EDN87114.1| hypothetical protein PARMER_01449 [Parabacteroides merdae ATCC 43184] Length = 395 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 120/334 (35%), Positives = 180/334 (53%), Gaps = 16/334 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +EA Sbjct: 53 EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 112 Query: 68 --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 R +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L + GI Sbjct: 113 LLRDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGTLDPFPEVSGRGVRMLREAGIE 172 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISK 180 +V ++E E + A++T Q+ KR ++ LK A S D I + SV ++ + Sbjct: 173 VVTGVLEEEARALNPAFMTFQIRKRPYVYLKWAQSADGFIDIRREDASVPSVLLSSAETL 232 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH LR++ AI+VG T L D+P LT R SP+R++LD KL + S ++ A Sbjct: 233 RRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGRSPVRVVLDRTLKLPVGSHLLDGA 290 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ T V + I L ++L L G+ + SL+VEGGA + Sbjct: 291 --VPTLVFT----AVEVESRPNVEYVQIDFGQEVLSQVLQYLYGQNLNSLMVEGGAELLE 344 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 SF+++ L D + + +V+G G+ +P G L Sbjct: 345 SFLDAGLWDEAWVETAPVVLGA-GVKAPAVPGVL 377 >gi|262405149|ref|ZP_06081699.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22] gi|262356024|gb|EEZ05114.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_22] Length = 351 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T R ITLK A S D+ I + PI + ++ Sbjct: 130 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + + GI +P ++ NF ++F + Y+ + Sbjct: 300 SFIDNELWDEAYIEKCPSRL-HSGIKAP----QMDDNFSYSIEEHFERQIW-HYVRR 350 >gi|319790138|ref|YP_004151771.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans HB-1] gi|317114640|gb|ADU97130.1| riboflavin biosynthesis protein RibD [Thermovibrio ammonificans HB-1] Length = 371 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 189/365 (51%), Gaps = 15/365 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + G T NP+V ++V++G V+ G G PHAE ALE AG++ Sbjct: 3 DCYFMELALAEAYKGKGKTLPNPAVGAVVVREGRVVATGYHEAPGRPHAEAVALERAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GAT YVTLEPC+HYGR+PPC + II G++RVVV + DP+ V+ G++ L GI V Sbjct: 63 AKGATLYVTLEPCNHYGRTPPCTEKIIASGVKRVVVGLRDPNP-VASGGIERLRGAGIEV 121 Query: 127 DRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E L +LT RS + LK+A + D S ITG ++ VH Sbjct: 122 TVGVLKERCFELVEDFLTLVTCGRSFLHLKLASTLDGATADRDGRSKWITGGEARRLVHR 181 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+ +A++VGIGTVLADDP LT R + E P+ +++DP KL ++ +++K A + Sbjct: 182 LRSYHNAVMVGIGTVLADDPLLTVREFPV-EKQPIAVVVDPSLKLPVNCRLVK-ERAAEL 239 Query: 246 IIVTENDD--PVLALAFRKKNINIIYC----DCRDLKKLLTILVGR-GVTSLLVEGGAAV 298 ++VT + A + + ++ DL++ L L V SLL EGGA + Sbjct: 240 VVVTAQESLLSYKASLLQDLGVRLLPVFGGEGRLDLEEALNGLKEEFSVYSLLCEGGARL 299 Query: 299 AHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEY 354 A S + LVD + L+ + +G +P E NF GSD L+ Sbjct: 300 AGSLLVQGLVDRLSLFYAPKALGGRDFVPIFGCESRSLEEAFNFWLFECGKVGSDALLKL 359 Query: 355 IGKNL 359 + L Sbjct: 360 YSREL 364 >gi|293371696|ref|ZP_06618107.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f] gi|292633393|gb|EFF51963.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CMC 3f] Length = 351 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 120/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 10 EKYMKRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCANLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 130 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVSLSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + G + S ++ ++ NF ++F + Y+ + Sbjct: 300 SFIDNELWDEAYIEKCP-----GRLHSGVKAPQMDDNFSYSIEEHFERQIW-HYVRR 350 >gi|315186245|gb|EFU20006.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase ;5-amino-6-(5-phosphoribosylamino)uracil reductase [Spirochaeta thermophila DSM 6578] Length = 362 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 124/362 (34%), Positives = 196/362 (54%), Gaps = 10/362 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D FM AL +R G TS NP V ++VKDG V+G G G PHAEV AL E Sbjct: 1 MAERDVVFMRRALALARRAEGRTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG EARGA YVTLEPC H+GR+PPC I++ G+RRVVV DP+ +V+G+GL L++ Sbjct: 61 AGGEARGAEMYVTLEPCCHWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + +++R R + K+A S D I + S ITG S+ Sbjct: 121 GVEVEVGVLSREARWLNRGFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH LRA SD ++ GIGTVLADDP T R+ + P ++LD +L + +++++ Sbjct: 181 EVHRLRAGSDVLVTGIGTVLADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREG- 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAA 297 V++V D ++ + ++ R D++ + L GV ++VE GA Sbjct: 240 --TVVMVGPGVDEGWRGEMERRGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAG 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 V +F+ + +VD ++++ + V+GEG + + EG E+ + G D + + Sbjct: 298 VTGAFLEAGVVDELVVFVAPRVLGEGRGWVEGRVLEGLGEREWEVREVRGVGEDAVVRCV 357 Query: 356 GK 357 + Sbjct: 358 RR 359 >gi|237715308|ref|ZP_04545789.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1] gi|294643551|ref|ZP_06721357.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a] gi|294807058|ref|ZP_06765877.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD CC 1b] gi|229444617|gb|EEO50408.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D1] gi|292641126|gb|EFF59338.1| riboflavin biosynthesis protein RibD [Bacteroides ovatus SD CC 2a] gi|294445757|gb|EFG14405.1| riboflavin biosynthesis protein RibD [Bacteroides xylanisolvens SD CC 1b] Length = 345 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 122/357 (34%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 4 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIHSVKDES 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T R ITLK A S D+ I + PI + ++ Sbjct: 124 VSVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPIVLSSPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L DS+I Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDSQIFDGN-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 240 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 293 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + + GI +P ++ NF ++F + Y+ + Sbjct: 294 SFIDNELWDEAYIEKCPSRL-HSGIKAP----QMDDNFSYSIEEHFERQIW-HYVRR 344 >gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Sodalis glossinidius str. 'morsitans'] gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str. 'morsitans'] Length = 375 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 177/366 (48%), Gaps = 18/366 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +++ A +R T+ NP+V C+IV+DG ++G G G HAEV AL +AG Sbjct: 2 DHDEVYLARAFELARRGRFTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQAG 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 AR ATAYVTLEPCSH+GR+PPCA +I+ G+ RVV + DP+ +V+GRG L Q GI Sbjct: 62 NAARCATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M E + +L R + LK+A S D MA S IT ++ V Sbjct: 122 EVRHGLMLPEAEAVNPGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSL 232 RA+SDAIL TVLADDP LT R L E P+R+I+D ++ Sbjct: 182 QRWRAESDAILSTATTVLADDPALTVRWASLPEDVQALYPEERLRQPVRVIIDRANSVTP 241 Query: 233 DSKIIKTALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 + + L + + +D P DL L+ L R + SL Sbjct: 242 SHWVAQGVGLTWLARLAPDDLTWPSSVEQLLLPAGEGANAAHLDLVALMMQLGRRQINSL 301 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYF 346 VE GA +A + + + LVD +ILY++ ++G P LE F + Sbjct: 302 WVEAGAGLAGALLGAGLVDELILYQAPKLLGADARPLCLLPGLERLGAAPGFTLLDVRQV 361 Query: 347 GSDVCL 352 G D+ L Sbjct: 362 GPDLRL 367 >gi|294678596|ref|YP_003579211.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB 1003] gi|294477416|gb|ADE86804.1| riboflavin biosynthesis protein RibD [Rhodobacter capsulatus SB 1003] Length = 367 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 131/368 (35%), Positives = 191/368 (51%), Gaps = 16/368 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RFM AL + +G NP+V C+IV G ++GRG T GG PHAE +AL++ Sbjct: 1 MSEADGRFMRLALGLAGRGLGNVWPNPAVGCVIVNGGRIVGRGWTQPGGRPHAERRALDQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++DPD RVSGRG L Sbjct: 61 AGPAARGATAYVTLEPCAHHGKTPPCAEALIAAGVVRVVSALEDPDPRVSGRGHAMLRAA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ +E + +L+R R + LK+ S D I +A S ITG ++ Sbjct: 121 GIAVETGVLAAEARAAQAGFLSRIERGRPWLALKLGASFDGRIALANGESQWITGPQARA 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV LRA+ DA+LVG GT ADDP LT R + +P+R++ L ++ + Sbjct: 181 QVQALRARFDAVLVGGGTARADDPLLTLR-HFKPLRAPVRVVASRRLDLPRG-RLAGSLG 238 Query: 242 LAPVIIVTENDDPVLALA-FRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLV 292 AP+ ++ + P A A + +I R D LL L RG+T + Sbjct: 239 QAPLWLLHGAEAPGEARAFWAGLGAELIEVAGRDTGRDTGLDPVALLAALGARGLTRVFC 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348 EGG A S + + LVD +I + + +V+G P + G + G Sbjct: 299 EGGGQFAASLMAAGLVDELIGFTAGVVLGGDARPGIGDLGLTRLAEAPRYRLDSLQPIGP 358 Query: 349 DVCLEYIG 356 DV ++ Sbjct: 359 DVLARWLR 366 >gi|260642492|ref|ZP_05859416.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM 17565] gi|260621884|gb|EEX44755.1| riboflavin biosynthesis protein RibD [Bacteroides finegoldii DSM 17565] Length = 373 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 114/352 (32%), Positives = 180/352 (51%), Gaps = 22/352 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E Sbjct: 32 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGRIIGEGYHVRCGEAHAEVNAIRSVKDES 91 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 92 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLQNAGRE 151 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182 ++ ++E E + ++T +R ITLK A S D I + V ++ ++ Sbjct: 152 VIVGVLEEECLHLIRRFITFNTLRRPFITLKWAESADQFIDIERIDGNPVLLSSPLTSML 211 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++ AI+VG T L D+P LT R +P+RI+LD + L D +I Sbjct: 212 VHKKRAENTAIMVGRRTALLDNPSLTVR--NWYGRNPIRIVLDRNLSLPNDLQIFNGE-- 267 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ TE + P +K+++ I D LK ++ L R + SLLVEGG+ + Sbjct: 268 VPTLVFTEKEHP------EEKSVSYITIDFGHNPLKLIMEELYQRNIQSLLVEGGSQLLQ 321 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 SFI++ L D + + + G+ SP + NF +++FG + Sbjct: 322 SFIDNELWDEAYIEKCPKRL-YSGVKSP----EISNNFSYSTKEHFGRQIWY 368 >gi|116073254|ref|ZP_01470516.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916] gi|116068559|gb|EAU74311.1| Riboflavin biosynthesis protein RibD [Synechococcus sp. RS9916] Length = 386 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 184/380 (48%), Gaps = 21/380 (5%) Query: 3 VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58 +S+ + R+ M AL+ + G TS NP V +++ G ++G G A G PHAEV Sbjct: 1 MSAAEQRWIPWMRRALQLAALADGHTSPNPLVGAVVLDAAGQLVGEGFHARAGEPHAEVG 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AG+ ARG T VTLEPC H+GR+PPCA +I GI+RVVV + DPD RV+G GLQ Sbjct: 61 ALAQAGDAARGGTIVVTLEPCCHHGRTPPCADAVIAAGIQRVVVALTDPDPRVAGGGLQR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ ++ ++E+E A++ R R LK A+ D ++ S I+G Sbjct: 121 LRDAGLEVISGVLEAEAAYQNRAFVHRVQTGRPWGVLKWAMGLDGRTALSNGASQWISGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH LRA DA++VG GTV ADDP LT R G P+R++L L +++ Sbjct: 181 PARAWVHQLRAGCDAVIVGGGTVRADDPLLTSR--GRCASEPLRVVLSRSLDLPQSAQLW 238 Query: 238 KTALLAPV---------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 + + E V A + + + D + + L L RG Sbjct: 239 DQTVAPTLVAHGPVAVAAAADEAPASVRLAALQGHGVAVQQLDRCEPEALFPELASRGCN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RR 343 +L E G ++A + ++ V + + + V+G +PL + V Sbjct: 299 RVLWECGPSLAAAALHQGCVQELAVVIAPKVMGGELARTPLGDLGFTAMDQVVPVSLAAA 358 Query: 344 DYFGSDVCLEYIGKNLCLQE 363 G D+ L+ + + +Q+ Sbjct: 359 QNLGRDLLLQGVVGAMPIQD 378 >gi|238024083|ref|YP_002908315.1| putative deaminase [Burkholderia glumae BGR1] gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1] gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae] gi|237878748|gb|ACR31080.1| Putative deaminase [Burkholderia glumae BGR1] Length = 384 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 117/362 (32%), Positives = 183/362 (50%), Gaps = 17/362 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + D +M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A+++A Sbjct: 18 ALDRAWMAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDAR 77 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G E RGATAYVTLEPCSHYGR+PPCA+ ++E GI VV ++DP+ +VSGRG L + Sbjct: 78 SRGHELRGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLRE 137 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E + +++R R + +K+A S D + S ITG ++ Sbjct: 138 AGIEVRGGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGSAAR 197 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H RA++ +IL GIGTV DDP+L R P R+++D L +++++ A Sbjct: 198 ADGHAWRARACSILTGIGTVRRDDPQLNVR-GIDTPRQPRRVLIDARLDLPHEARLM--A 254 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEG 294 P++ E D A A + DL +L L GRG L VE Sbjct: 255 GPPPLVFCGELDASARARADALRARGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEA 314 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDV 350 G ++ + + + LVD +++Y + ++G + + G D+ Sbjct: 315 GRTLSGALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDL 374 Query: 351 CL 352 + Sbjct: 375 RI 376 >gi|88704437|ref|ZP_01102151.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis KT71] gi|88701488|gb|EAQ98593.1| Riboflavin biosynthesis protein ribD [Congregibacter litoralis KT71] Length = 377 Score = 316 bits (811), Expect = 2e-84, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 183/364 (50%), Gaps = 12/364 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM+ ALR + NP V C++V+D V+G G T G HAE+ AL+ AG+ Sbjct: 14 DRQFMARALRLAERGKYWARPNPHVGCVLVRDSTVVGEGFTQPAGGDHAEIMALKAAGDA 73 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARG+TAYVTLEPC+H GR+PPC +I G+ RV V + DP+ +V G G+ L +G+ + Sbjct: 74 ARGSTAYVTLEPCAHTGRTPPCCNALIAAGVARVFVGLRDPNPKVDGGGIHRLQAEGLAV 133 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + + L +L RQ R + +K+A+S D MA S ITG ++ V Sbjct: 134 HQGLMADQVEAQLAGFLQRQRLGRPRLRIKLAMSLDGRTAMASGESQWITGPQARLDVQK 193 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG-------LQEHSPMRIILDPHFKLSLDSKIIK 238 LRA+S AIL G+GTVL DD LT R + + +R++ D H + + +++ Sbjct: 194 LRAESCAILTGVGTVLEDDCALTVRDSAFDDELLPAPQRRALRVVADRHLRTPAHAAVLQ 253 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + ++ + D L + +++ L R +L+E G + Sbjct: 254 GEQPSLILHGSGADASHLPETLEHLALPG-EAGGVAPAEIMAALAARECNEILLESGPTL 312 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A + + S + D++I+Y + +++G P PL+E V R G D ++ Sbjct: 313 AGAMLRSGMADALIVYIAPVLLGSRARPLLELPLDEMAEALRLQLVDRRQIGDDHRFVFV 372 Query: 356 GKNL 359 +++ Sbjct: 373 PQSV 376 >gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chromobacterium violaceum ATCC 12472] gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chromobacterium violaceum ATCC 12472] Length = 368 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 186/367 (50%), Gaps = 18/367 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D +M ALR + + NP V C++V G V+G G T G HAEVQA+++ Sbjct: 5 SADDYLYMQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQAIKDC 64 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 GE RGATAYVTLEPCSH+GR+PPCA+ +++ G+ RVV + DP VSGRG+ L Sbjct: 65 LARGESPRGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGIAMLR 124 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ +ME++ + +L+R R +TLK A + D + S ITG + Sbjct: 125 AAGVEASAGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWITGPEA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V LRA AIL G GTVLADDP+LT R + P R++LD + +++ + Sbjct: 185 RMDVQRLRAAHCAILTGSGTVLADDPQLTVRELQVAS-QPWRVVLDGDLRTDPAARVYQG 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGG 295 + + D AFR + + ++ DL LL L GRGV L+VE G Sbjct: 244 GGA---WLASCAADAGRLAAFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEAG 300 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDV 350 A + + + + LVD I+LY + + G+ P+ L++ + G D+ Sbjct: 301 AGLNGAMLRAGLVDEIVLYLAPSLAGDAARGLFAWPA-LDDLADKVELDVADVGMVGRDL 359 Query: 351 CLEYIGK 357 L + Sbjct: 360 RLTLRPR 366 >gi|237719659|ref|ZP_04550140.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4] gi|229450928|gb|EEO56719.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_2_4] Length = 345 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 119/357 (33%), Positives = 180/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV DG +IG G G HAEV A+ +E Sbjct: 4 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 124 VTVGVLEEECKSLIRRFITFNTLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 184 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P I TE + P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 240 VPTFIFTEKEQP------EKKNITYITINFNHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 293 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + + G+ +P ++ NF ++F + Y+ + Sbjct: 294 SFIDNELWDEAYIEKCPSRL-HSGVKAP----QMDDNFSYSIEEHFERQIW-HYVRR 344 >gi|332976011|gb|EGK12882.1| riboflavin biosynthesis protein RibD [Psychrobacter sp. 1501(2011)] Length = 374 Score = 316 bits (809), Expect = 4e-84, Method: Composition-based stats. Identities = 115/360 (31%), Positives = 180/360 (50%), Gaps = 36/360 (10%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A+ ++ + T NP+V C++VKDG++IG G G PHAEV AL A + Sbjct: 36 DYYYMNLAIEAAKKGLYTTRPNPAVGCVLVKDGLIIGTGFHPKAGQPHAEVFALRNATQS 95 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ATAYVTLEPCSH G++PPCA+ +I+ + RVV+ DP+ +V+GRG++ L GI + Sbjct: 96 VAAATAYVTLEPCSHTGKTPPCAEALIKAQVSRVVIAGLDPNPKVAGRGVRLLLDAGIKV 155 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + +L + ++ LKIA S D MA S ITG ++ V Sbjct: 156 SVGVCTEQAEQLNLGFLKSMRTQMPYVRLKIASSLDGRTAMASGESKWITGSAAREDVQQ 215 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLS-LDSKIIKT 239 LRA S AI+ G T++ D+P L R L Q P ++LD +L D K+++ Sbjct: 216 LRALSGAIITGSQTIIKDNPSLNVRSTQLGVDIEQIPQPKVVVLDRRQRLKGSDYKVLQN 275 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAV 298 ++ +N DLK LL L V + +L+E G+ V Sbjct: 276 EQ---TLLWADN----------------------DLKTLLHSLVVEHDIHDVLIEAGSKV 310 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + SFI + LVD +I+Y++ V+G P + ++ F G+D+ L ++ Sbjct: 311 SGSFIEAGLVDELIVYQAPCVLGHEAQPMLTMTVNRLSSQRRFKLAHCSQIGTDIKLNFV 370 >gi|154248198|ref|YP_001419156.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus Py2] gi|154162283|gb|ABS69499.1| riboflavin biosynthesis protein RibD [Xanthobacter autotrophicus Py2] Length = 383 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 208/369 (56%), Gaps = 16/369 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGI--VIGRGVTAYGGCPHAEVQAL 60 D RFM+ AL+ + +G T NPSV ++V+ DG ++G TA G PHAE AL Sbjct: 15 EDDERFMAEALKVGQSGLGRTWPNPSVGAVVVQHVDGRPHIVGAAATAPTGRPHAEPIAL 74 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARG+T YVTLEPCSH+GR+PPCA +I G+RRVV ++DPD RV GRG+ L Sbjct: 75 AQAGEAARGSTLYVTLEPCSHHGRTPPCAGAVIAAGVRRVVAAIEDPDHRVKGRGVARLR 134 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + + + ++ R E R H+ LK+AVS D +AG +TG + Sbjct: 135 AAGIWVTVGVGAEQALADHAGHIRRVTEGRPHVLLKMAVSADGKAALAGPRPAVVTGPEA 194 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + + HL+RA +DAILVG+GTV ADDP LTCRL G ++ SP+R++LD + L+S +++T Sbjct: 195 RARAHLMRAHADAILVGLGTVTADDPMLTCRLEGHEDRSPVRLVLDSGLDIPLESALVRT 254 Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLV 292 A PV ++ D P A A ++ + ++ L +L +L G+T L+V Sbjct: 255 ASDVPVWVIAAEDAPAERAAALMERGVEVLRAPRGGIEGRLHLPAVLKLLGLLGITRLMV 314 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGS 348 EGG A A +F+ + LVD + ++ S +++G PL + F V R G+ Sbjct: 315 EGGPATAAAFLEAGLVDEVAVFHSPVLLGPDAYHALAGRPLGRLFAPVGFAEVERAELGA 374 Query: 349 DVCLEYIGK 357 D + + Sbjct: 375 DRLVRLWRR 383 >gi|254173530|ref|ZP_04880202.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4] gi|214032222|gb|EEB73052.1| riboflavin biosynthesis protein RibD [Thermococcus sp. AM4] Length = 360 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 178/356 (50%), Gaps = 23/356 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D RFM AL ++ G + NP V +IVKDG VIG G G HAEV A+E+ Sbjct: 1 MSSEDERFMRLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRRFGEKHAEVNAIED 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+G+ PPCA II+ G +RVVV + DP+ VSGRG++ + Sbjct: 61 AKSRGHDVRGATMYVTLEPCSHWGKQPPCADRIIKEGFKRVVVAMVDPNPLVSGRGIEKM 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI + ++E E + ++ K +++K+A++ D I S ITG Sbjct: 121 RKAGIEVEVGVLEDEARRLNEIFIKYVTTKMPFVSIKLALTLDGFIATETGSSQWITGEK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-- 236 ++ +V LR + AI+VG GTVLAD+P L CRL E +++ILD +++ + Sbjct: 181 ARLKVQELRRRHMAIMVGAGTVLADNPRLNCRLENCPEK--VKVILDRSGRVAEAIRSGR 238 Query: 237 -IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + VI TE P L + +++L L G+ S+L+EGG Sbjct: 239 KFRLFEDGRVIFFTER--PELFEGIAEAY------PITGPEEILRKLGELGIDSVLIEGG 290 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGS 348 +A F++ D L+ + G G P + + + G Sbjct: 291 -RIACQFLS--YADKFYLFYGPKLFGRGIKPFECLNVRDANEAPLLRIDSIERLGE 343 >gi|260172134|ref|ZP_05758546.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D2] gi|315920443|ref|ZP_07916683.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694318|gb|EFS31153.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 351 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 113/346 (32%), Positives = 170/346 (49%), Gaps = 18/346 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + NP V +IV +G +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182 ++ ++E E + + ++T R ITLK A S D+ I M V ++ ++ Sbjct: 130 VIVGVLEEECQSLIRRFITFNTLHRPFITLKWAESADHFIDMERTSGMPVKLSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDEN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ TE P NI I D LK+++ +L R + SLLVEGG+ + Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNTLKQIMEVLYQRKIQSLLVEGGSQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 SFIN L D + + + G+ +P + F Sbjct: 300 SFINDELWDEAYIEKCPSRL-HSGVKAPQINNNFSYSIEEHFERQF 344 >gi|158522090|ref|YP_001529960.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans Hxd3] gi|158510916|gb|ABW67883.1| riboflavin biosynthesis protein RibD [Desulfococcus oleovorans Hxd3] Length = 363 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 10/358 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM+ AL + G TS NP V ++V+DG V+G+G A G PHAEV A+++AGE Sbjct: 2 DDTYFMNMALGLAERGTGFTSPNPVVGAVVVRDGRVVGQGFHAAAGKPHAEVVAIDDAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA YVTLEPC+H GR+PPC + I + GI RVVV D + V+G G+Q+L +GI Sbjct: 62 LARGADLYVTLEPCNHTGRTPPCTRKICDAGIARVVVATIDSNPHVAGGGIQYLESRGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + E+E K + + R +T+K A++ D I S +TG ++ VH Sbjct: 122 VTVGVCEAEAKKQIEWFAKYVTTGRPFVTVKCAMTLDGRIATRTGDSKWVTGEAARAFVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +R SDAILVG+GT AD+P LT R+ G++ PMRI+LD + D+ + A Sbjct: 182 RMRHASDAILVGVGTANADNPRLTARVEGMRTRDPMRIVLDTKLSIREDAAMFDLDSSAE 241 Query: 245 V-IIVTENDDPVLALAFRKKNINI---IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+V D + K + D+ L+ L G+TSLL+EGG V Sbjct: 242 TLIVVGPGHDKKKRDRLKGKARFFDAALAIGRIDMAGLMDGLGKMGITSLLIEGGGQVIG 301 Query: 301 SFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353 + + +VD + + + ++ G+ G+P G + V F D+ +E Sbjct: 302 AAFAAGIVDKVCFFYAPKILGGDDGVPVCAGAGQEQMKNALPVRNVSVTRFDDDILIE 359 >gi|257455158|ref|ZP_05620396.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus SK60] gi|257447491|gb|EEV22496.1| riboflavin biosynthesis protein RibD [Enhydrobacter aerosaccus SK60] Length = 359 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 165/364 (45%), Gaps = 33/364 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +MS A+ ++ T NPSV C+IVKD +IG G G PHAEV AL +A E Sbjct: 14 QYYMSRAIELAKKGRFTTRPNPSVGCVIVKDNQIIGEGFHYQAGQPHAEVFALRQAYERD 73 Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 +GA AYVTLEPCSH+GR+PPCA +I+ GI RVV+ V DP+ +V G G+ L Q G Sbjct: 74 AKHLQGAIAYVTLEPCSHHGRTPPCADALIQAGISRVVIAVVDPNPKVDGGGIAKLQQAG 133 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ + E + + LKIA S D MA S IT S+ Sbjct: 134 IEVITGICEQAAYQLNEGFFKVMRGGLPFVRLKIATSLDGRTAMANGESKWITSDQSRED 193 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKII 237 V LRAQ+ AI+ G T+L D P L R L P+ ++LD ++ + Sbjct: 194 VQRLRAQAGAIITGSETILQDHPALNIRSQQLGANLDDIPQPLLVVLDRRQRIQMT---- 249 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGA 296 D + + +I L LL L + +LVE GA Sbjct: 250 ---------------DAWYQSQITHRPVLLIQDSTMSLTTLLNTLKDNYQINDVLVEAGA 294 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 VA SF+ LVD +++Y++ +G P + + + V + +D+ L Sbjct: 295 TVAASFLQQGLVDELVVYQAPCFLGNSAKPMINFNAQHIHQQIIASLVSHETMETDIKLT 354 Query: 354 YIGK 357 Y Sbjct: 355 YRFD 358 >gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix] gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix] Length = 396 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 185/382 (48%), Gaps = 34/382 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R M+ AL + NP V C++V++G V+G G+ G HAEV AL AGE Sbjct: 12 DRRHMARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA 71 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH+GR+PPC + +I+ G+ RVV+ + DP+ +V G G++ L GI + Sbjct: 72 ARGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEV 131 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E+E + ++ R + R + +K+A S D MA S ITG ++ V L Sbjct: 132 ETGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQL 191 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----------------NGLQEHSPMRIILDPHF 228 RA++ AIL G GTV+ADDP LT RL + L P+R+ILD Sbjct: 192 WRARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARL 251 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPV--LALAFRKKNINIIYC--------DCRDLKKL 278 + ++I+K+ PV I+T D A R ++ DL ++ Sbjct: 252 RTPPGAQILKSG---PVWILTGPDAARSPAADTLRGHGADVRPIALASDSPDGGLDLGEV 308 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLE 335 L L V L VE G +A + VD +LY++ +++G P PL Sbjct: 309 LAELARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARPLVEWPLARMDER 368 Query: 336 KNFMCVRRDYFGSDVCLEYIGK 357 + + G + L + Sbjct: 369 AELEILESRWVGDSLRLRARPR 390 >gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231] Length = 376 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 111/360 (30%), Positives = 181/360 (50%), Gaps = 10/360 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D ++M+ ALR ++ + T NP V C+IV++G ++G G G PHAE+ AL Sbjct: 10 FTAADRQYMAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAA 69 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGA YVTLEPC H+GR+PPC ++ GI RV+ DP+ RV+G+GL+ L+ Sbjct: 70 AGQAARGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +M + + + R ++ K+A+S D MA S IT ++ Sbjct: 130 GITTRHGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARG 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LRA+SD +L G GTVLADDP+LT R P R++LD ++ +++++ Sbjct: 190 DVHRLRARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQE 249 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGA 296 V+ + L + I D +L++ LT + + LLVE G Sbjct: 250 PGKVAVLYAHHDRRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGP 309 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCL 352 ++ + + + L+D +++Y + ++G+ P G + G D+ L Sbjct: 310 TLSGALLQADLIDELVVYIAPHLMGDEARPLLRLPGLVRMAERIPITITDMRALGPDLRL 369 >gi|212696303|ref|ZP_03304431.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM 7454] gi|212676932|gb|EEB36539.1| hypothetical protein ANHYDRO_00840 [Anaerococcus hydrogenalis DSM 7454] Length = 359 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 162/356 (45%), Gaps = 16/356 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T NP V ++VKDG +I G G HAEV E Sbjct: 3 DKYYMKKCFDLAKKARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI + Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLREKGIEV 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242 LR DAI+VG T++ D+P L R+ + P+R+I+D + ++ D KI Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--EGVDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D L K + + DL+ L+ L + S+LVEGG+ + + F Sbjct: 239 KKTYIATCKDTDNPDLNLIKCK---MKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDF 295 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + LVD I + S +IG SP ++K F F D+ +E Sbjct: 296 LEEGLVDKIYEFISPKIIGGFNSKSPFYGRGVDKIKDGYKFEIEDIKRFDDDIMIE 351 >gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14] gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14] Length = 396 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 124/356 (34%), Positives = 179/356 (50%), Gaps = 7/356 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D + M+ ALR + T NP V C+I V+G+G G PHAEV AL Sbjct: 39 PFSVLDHQHMANALRLAERGAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALR 98 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAG EARGATAYVTLEPC+HYGR+PPCA +IE G+ RVV + DP +V G G L + Sbjct: 99 EAGSEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRE 158 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + +M ++ + +L+R R + +K+A S D MA S ITG ++ Sbjct: 159 AGIDVSEGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAR 218 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 V RA++ AIL G TVLADDP LT RL + P+R++LD + S++ Sbjct: 219 EDVQHWRARAGAILTGADTVLADDPMLTVRLADAEVMPPLRVVLDSRLRSLECSRV--RE 276 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P + + A + DL +L +L RG+ + E GA +A Sbjct: 277 GGTPTLYLHNAIVSPPDAADAAFASVALRHGHLDLGAVLALLADRGINEVHTEAGATLAG 336 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCL 352 + + VD ++LY + ++G+ G P G ++ V + G D+ L Sbjct: 337 ALLRGGWVDELLLYLAPTLLGDSGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDLRL 392 >gi|118496729|ref|YP_897779.1| pyrimidine reductase/pyrimidine deaminase [Francisella tularensis subsp. novicida U112] gi|194324036|ref|ZP_03057811.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. novicida FTE] gi|208780000|ref|ZP_03247343.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG] gi|118422635|gb|ABK89025.1| pyrimidine reductase/pyrimidine deaminase [Francisella novicida U112] gi|194321933|gb|EDX19416.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. novicida FTE] gi|208744004|gb|EDZ90305.1| riboflavin biosynthesis protein RibD [Francisella novicida FTG] Length = 355 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|255002722|ref|ZP_05277686.1| riboflavin biosynthesis protein (ribD) [Anaplasma marginale str. Puerto Rico] Length = 364 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 135/348 (38%), Positives = 192/348 (55%), Gaps = 11/348 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 MS ALR + +G T NP+V C++ G ++GRG TA GG PHAEV AL++AGE A G Sbjct: 1 MSIALRLAHRGLGNTYPNPTVGCVVTNSAGSIVGRGWTAMGGRPHAEVVALKQAGEAAAG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 +T YVTLEPC H+G++ PC +I G+RRVV+ DPD RVSG+G + L+ G+ + Sbjct: 61 STVYVTLEPCCHHGQTGPCTAALISAGVRRVVIAALDPDKRVSGKGARSLADSGVEVKLG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ + + + + ++R IT+K+A + D I + IT +++ VH RA Sbjct: 121 VLQQQAEELNVGFFYSKTKRRPFITVKLATTLDGKISLPNGSDRWITNELTRKWVHKQRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 D I+VG TV+ADDP L CRL GL+EHSP+RI++D KL K++ T+ + P I Sbjct: 181 MHDGIMVGSNTVVADDPMLDCRLPGLEEHSPIRIVIDRSGKLCSHHKVVATSDVVPTYIA 240 Query: 249 TENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGR-GVTSLLVEGGAAVAHSFINSR 306 T+NDD A R I C+ D L + L G+T L VEGG + + Sbjct: 241 TDNDDHKALHAVRYLRI----CERGDFLAGTMNALAEELGITRLFVEGGGVLVTELLKRG 296 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVC 351 LVD I R+ V GE G+ S L L +F V+ F D Sbjct: 297 LVDQFIWCRANRVCGEQGVESILNLNELPSGHCHFSRVKTLTFMEDTV 344 >gi|110636628|ref|YP_676835.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Cytophaga hutchinsonii ATCC 33406] gi|110279309|gb|ABG57495.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cytophaga hutchinsonii ATCC 33406] Length = 352 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 110/358 (30%), Positives = 169/358 (47%), Gaps = 22/358 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D R+M AL + G S+NP V C++VKDG +IG G G PHAEV A++ Sbjct: 2 DSDERYMRRALELAMLGSGHVSSNPMVGCVVVKDGHIIGEGYHEKFGQPHAEVHAIQSVP 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ G+T YV LEPCSHYG++PPC+ I++ I RVV DP+ V+G G ++L Sbjct: 62 DKSLLEGSTLYVNLEPCSHYGKTPPCSHLIVDYKIARVVFANIDPNPLVAGAGFEYLMSN 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ ++E EG+ + T KR +I LK A + D I S I+ +S+ Sbjct: 122 GIEVIQGVLEEEGRELNRRFFTYIENKRPYIILKWAETADGFIAKENFDSKWISNELSRK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R + D +L+G T L D+P L R +P+R +D ++ + + ++ + Sbjct: 182 LVHKWRTEEDVVLIGTNTALYDNPRLNVR--DWTGRNPVRAFIDKQLQVPVGAHLLDGSQ 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVA 299 E D L + + D D + + + R S+LVEGG + Sbjct: 240 ETICYNYHEQDVRNL--------VEYVKVDPLDDMIDVIAEDMYVRKHLSILVEGGTQLL 291 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SF+ L D I ++RS G GI SP+ ++ D + Y K Sbjct: 292 KSFLKKGLWDEIRIFRSPNEFGA-GIESPIV------RAKAFSQEMILDDTLIVYRNK 342 >gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus Vesicomyosocius okutanii HA] gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus Vesicomyosocius okutanii HA] Length = 349 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 101/356 (28%), Positives = 179/356 (50%), Gaps = 20/356 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S + + M+ A++ + +NP V C+IVK +I +G G H E+ AL+ Sbjct: 4 TFSKNETQNMTIAIKLALQGRYGVKSNPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQ 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + +A GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L Sbjct: 64 QINYKAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKY 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + +++++ I ++ R + I K+A+S D M+ S IT +++ Sbjct: 124 AGIEVKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVAR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239 V LRA AI+ G GT++ D+P +T RL+G+ P+R+++D +++ S I T Sbjct: 184 LDVQKLRANHQAIITGSGTIINDNPLMTVRLDGVNSK-PLRVVIDSKNQITDTSLNIFNT 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP +I N ++ DL +LT L +G+ ++L+E G + Sbjct: 243 D--APTLI------------LNPDNTKVLASGKLDLSNVLTQLGNQGINNVLLEAGPKLI 288 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352 + I L+D I+Y + I++G +++ + V G ++ + Sbjct: 289 GAMIKINLIDEFIIYMAPILMGSDANSILNLVIKDMSYKIKLDIVDVRMVGDNIKI 344 >gi|46446676|ref|YP_008041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Protochlamydia amoebophila UWE25] gi|46400317|emb|CAF23766.1| probable diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Protochlamydia amoebophila UWE25] Length = 368 Score = 314 bits (806), Expect = 9e-84, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 181/367 (49%), Gaps = 10/367 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S FM A+ S NP V C+IVKD +IG+G T G HAE+ AL Sbjct: 1 MKNSEIHHTFMLEAIAESWKARLHAPPNPWVGCVIVKDQKIIGKGYTYPSGQAHAEINAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + A E A+GA+ YVTLEPCSH+G++PPC + II GI V V + DPD RV G+G+Q L Sbjct: 61 KSASENAKGASLYVTLEPCSHHGKTPPCTEAIIRAGILNVYVALKDPDSRVRGQGIQKLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + + E E K+ L YL ++ + + LKIA S D S +T + Sbjct: 121 EAGIHVKVGIGEKEAKVVLTPYLYQRESQIPYTVLKIATSVDGRTAAVDGTSQWLTSSEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIK 238 + HL RA S A+++G GT D P+LT R + P RI++D K + Sbjct: 181 RLDAHLQRAYSQAVVIGSGTATIDSPQLTVRHPTIHLFQQPQRILIDSSGKTPATGLLFD 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293 L +++ T+ + K +I +L++ +L RG+ +LVE Sbjct: 241 QKLAPTLVLTTKASSITRQNEWLKTGAEVIVISATKNGHVNLREAWQLLAKRGIIQVLVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD---YFGSDV 350 GG+ + + + LV+ + +Y ++IG+ G+P +E K ++ F + Sbjct: 301 GGSTLQSALLEIGLVNCLSVYTGPLLIGKSGLPLFSKEIPTLKKAKLLKIQNIKQFDNSF 360 Query: 351 CLEYIGK 357 ++Y+ K Sbjct: 361 RVDYLLK 367 >gi|145628121|ref|ZP_01783922.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 22.1-21] gi|144979896|gb|EDJ89555.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae 22.1-21] Length = 339 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 117/339 (34%), Positives = 177/339 (52%), Gaps = 20/339 (5%) Query: 35 IVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIE 94 I K+G ++G G G PHAE AL +AGE A+GATAYVTLEPCSHYGR+PPCA +IE Sbjct: 3 IGKNGEIVGEGFHFKAGQPHAERVALAQAGENAKGATAYVTLEPCSHYGRTPPCALGLIE 62 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHIT 153 G+ +V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + Sbjct: 63 AGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQ 122 Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 LK+A+S D MA S ITG +++ V +RA+S A+L TV+ADDP L R + Sbjct: 123 LKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDE 182 Query: 214 LQE-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 E P+R+ILD ++ K+ T +PV +V+ +P F Sbjct: 183 FPENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFLT--HSPVWLVSS--EPRDLTGFPD 238 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 239 FCEQIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGD 298 Query: 323 GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L + + + G D+ L Y K Sbjct: 299 NARGLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 337 >gi|328676184|gb|AEB27054.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Francisella cf. novicida Fx1] Length = 355 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYGKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLNVRININKIKHPTRFILANHLTTINHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|295088113|emb|CBK69636.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides xylanisolvens XB1A] Length = 351 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T + R ITLK A S D+ I + P+ + ++ Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIMEALYQRKIQSLLVEGGRQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + G + S ++ ++ NF ++F + Y+ + Sbjct: 300 SFIDNELWDEAYIEKCP-----GRLHSGVKAPQMDDNFSYSIEEHFERQIW-HYVRR 350 >gi|91977144|ref|YP_569803.1| riboflavin biosynthesis protein RibD [Rhodopseudomonas palustris BisB5] gi|91683600|gb|ABE39902.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodopseudomonas palustris BisB5] Length = 396 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 155/366 (42%), Positives = 205/366 (56%), Gaps = 18/366 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D RFM AL R +G T+TNP+V +IVKDG+++GRG T GG PHAEV+AL AGE Sbjct: 28 DLRFMQLALTLGRRGLGRTATNPAVGAVIVKDGVILGRGWTEVGGRPHAEVEALARAGEA 87 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARGAT YVTLEPCSH GRSPPCA +I GI RVV ++DP+ V+G+G L GI + Sbjct: 88 ARGATLYVTLEPCSHVGRSPPCADAVIAAGISRVVSAIEDPNPLVAGQGHDKLRAAGIAV 147 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + +E + R ++R H+ LK+AVS D+ I AG V ITG ++ +VHL Sbjct: 148 DVGLCAAEAARDHAGHFRRVRDRRPHVVLKLAVSTDDKIARAGHKPVAITGEETRARVHL 207 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRAQSDAILVGIGTVLADDPELT RL G+ + SP+R++LDP ++ SK++ +A P+ Sbjct: 208 LRAQSDAILVGIGTVLADDPELTVRLPGMAKQSPIRVVLDPSLRIPGGSKLVHSARQTPL 267 Query: 246 IIVTENDDPVLALAFRKKNINIIYC-------------DCRDLKKLLTILVGRGVTSLLV 292 ++ A + DL +L L +GVT LLV Sbjct: 268 WLIASEVAEAAAATRLGAAGAHVIHVADRPSVTDGQSRPGLDLAAVLATLSEKGVTRLLV 327 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGS 348 EGGA VA + ++ L D I L R + IG G+ + PL + + G Sbjct: 328 EGGARVASALVSENLADEIWLLRGETTIGADGVDALDRLPLTTITQSSGWRVRDSERLGP 387 Query: 349 DVCLEY 354 D Y Sbjct: 388 DTLTIY 393 >gi|258645658|ref|ZP_05733127.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470] gi|260403024|gb|EEW96571.1| riboflavin biosynthesis protein RibD [Dialister invisus DSM 15470] Length = 434 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 190/365 (52%), Gaps = 15/365 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +FM+ AL + +G T NP V ++VKDG +IG G + G PHAEV A + Sbjct: 4 DDDKKFMARALELAANGMGHTRPNPMVGAVLVKDGEIIGEGWHEFYGGPHAEVNAFADCR 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT YVTLEPC HYG++PPCA I+ + RVVV + DP+ VSG+G++ L GI Sbjct: 64 ADPAGATLYVTLEPCCHYGKTPPCADLIVSKNLERVVVAMQDPNPLVSGKGIRKLKDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +ME E ++ ++ EK+ + K AVS D S I+ S+ +V Sbjct: 124 FVTTGVMEKEAQVLNEVFMKFITEKKPFVLYKSAVSMDGKTACHTGKSQWISSEESREEV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR A++ G GT+ ADDP LT R GL++ P+RII+D +S++S++ Sbjct: 184 RTLRGLYAAVMAGAGTIAADDPLLTARTEGLED--PVRIIVDGKLSVSMESRVFGGESRV 241 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 +++ T + AF+ K I +I+ D C DL+ + L +G+ S+L+EGGA Sbjct: 242 -IVLTTSSAASEKVKAFQSKGIEVIFADSDTEGCVDLEAAMIGLAVKGIDSILLEGGAET 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 A + + +VD I Y + I+IG P + +R + G D+ +E Sbjct: 301 AAAAFEAGIVDKIRFYMAPILIGGKDAPGAVGGTGAALIPEAVQLENIRTERSGVDLVVE 360 Query: 354 -YIGK 357 Y+ K Sbjct: 361 GYVKK 365 >gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chromohalobacter salexigens DSM 3043] gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chromohalobacter salexigens DSM 3043] Length = 380 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 184/358 (51%), Gaps = 21/358 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL+ +R T NP V C++V G ++G G AY G PHAEV AL EAG+ A GA Sbjct: 10 MARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREAGDAAAGA 69 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 T YVTLEPCSH+GR+PPCAQ +I+ G+RRVVV + DP+ +V+GRG+ L + GI VD + Sbjct: 70 TVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVDVGL 129 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + ++ + ++ R + + LK+A+S D MA S ITG ++ +V LRA+ Sbjct: 130 LATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRLRAR 189 Query: 190 SDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTAL 241 + A++ G+ +V+ D+ LT R + L P+R+++D +L L + ++ Sbjct: 190 ASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLREP- 248 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSLLVEGG 295 ++ T D A + ++ DL+ LL L +L+E G Sbjct: 249 -GRTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLETG 307 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349 A +A + ++ +D + L+ + ++G P LE ++ G D Sbjct: 308 ATLAGAMLDLEAIDEMHLFVAPTLLGGEARPLFALPGLERMAQQRPLHIDDIRAVGQD 365 >gi|297155739|gb|ADI05451.1| putative riboflavin/cytosine deaminase [Streptomyces bingchenggensis BCW-1] Length = 378 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 180/368 (48%), Gaps = 18/368 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 ++ +A M A+ + +G TS NP V C+I+ DG G G G PHAEV AL Sbjct: 3 TTAEAEAMRRAIALAARGLGHTSPNPVVGCVILDADGRTAGEGWHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARG TA VTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + +G + Sbjct: 63 AGERARGGTAVVTLEPCNHTGRTGPCAQALLDAGIVRVVYAVADPNAKAAGGAATLAAAG 122 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ + A+LT R + K A + D A S IT S+ Sbjct: 123 TAVESGLLADQAAAVNEAWLTSMRFGRPFVLWKYAATLDGRSAAADGTSRWITSAESRAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDPHFKLSLDS 234 VH LRA+SDA++VG GT+ ADDP L R P+R++LD ++ D+ Sbjct: 183 VHRLRAESDAVVVGSGTLRADDPHLAVRGASGSNGASGSNGARQPLRVVLDSKATIAPDA 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 +++ AP +I D P + LA + + I D+ LL L GRG+ S+L+ Sbjct: 243 RVLD--GTAPTLIAVAEDAPAVRLAGAETVRLPRAISGPGLDIPALLGELHGRGIRSVLL 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348 EGG +A +F+ +R VD ++ Y + ++G G P+ + G G Sbjct: 301 EGGPTLAGAFLAARAVDKVVGYLAPALLGA-GAPALADAGITTITQALRLELTDVTRLGP 359 Query: 349 DVCLEYIG 356 D+ + + Sbjct: 360 DLRITAVP 367 >gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2] gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2] Length = 369 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 110/363 (30%), Positives = 171/363 (47%), Gaps = 15/363 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 M S+ FM+ AL + + L+S NP V C+IV +IG+G T G PHAEV A Sbjct: 1 MTPSA---HFMNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMA 57 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L +A G + RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G Sbjct: 58 LRDAAAKGNDVRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGF 117 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L G+ + +E + + +R + + +K A S D + + S IT Sbjct: 118 ERLRAAGVDVEIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWIT 177 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ H RA++ IL GIGTVL D+P + R P ++D + LD+ Sbjct: 178 SAAARADGHAWRARACTILTGIGTVLEDNPRMNVRDVD-TPRQPRIAVVDSKLDIPLDAH 236 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVE 293 ++K + + + AL + + DL +L L RG L VE Sbjct: 237 VLKAPSGCLIYTCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 G + S I LVD ++ Y++ ++G G + PL+ + G D Sbjct: 297 AGFKLNGSLIREGLVDELLFYQAPKLLGTGAMGIANFGPLDRLDQGLPLVFHDVARLGPD 356 Query: 350 VCL 352 + + Sbjct: 357 LRI 359 >gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica W22703] Length = 337 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 115/337 (34%), Positives = 168/337 (49%), Gaps = 18/337 (5%) Query: 37 KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 +DG ++G G G PHAEV AL AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G Sbjct: 2 RDGEIVGEGYHLRAGEPHAEVHALRMAGEKARGATAYVTLEPCSHHGRTPPCADALLTAG 61 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 ++RVV + DP+ +V+GRGL L Q G+ + +M +E + +L R ++ LK Sbjct: 62 VKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPYLQLK 121 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 +A S D MA S IT ++ V RAQS AIL TVLADDP LT R L Sbjct: 122 MAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRWQELD 181 Query: 216 E-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 P+RII+D H +++ K+I+ P + D ++ Sbjct: 182 AQTQALYPQDALRQPVRIIVDSHNRVTPQHKVIQQD--GPCWLARVETDEQSWPNNVEQL 239 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + + DL L+ L R + S+ VE G A + + + +VD +ILY + ++G Sbjct: 240 LLPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAPKLLGSDA 299 Query: 325 IP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + L + F+ G D+ L K Sbjct: 300 RGLCQLTGLTQLSDAPEFVFSEVRQVGPDLRLRLQPK 336 >gi|297622519|ref|YP_003703953.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM 17093] gi|297163699|gb|ADI13410.1| riboflavin biosynthesis protein RibD [Truepera radiovictrix DSM 17093] Length = 393 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 111/326 (34%), Positives = 166/326 (50%), Gaps = 14/326 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + R+MS AL + G T+ NP V C+IV+D +IG G G HAEV+AL++A Sbjct: 10 AEHERYMSRALELAERGRGSTAPNPMVGCVIVRDDEIIGEGWHERAGEAHAEVRALQDAR 69 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G RGAT YVTLEPC+H GR+PPC + I+E G+RRVV+ DPD RV G G+ L Sbjct: 70 SRGARVRGATLYVTLEPCNHTGRTPPCTEAILEAGVRRVVIAALDPDPRVDGSGVARLQA 129 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ +V ++ +E + + T + R + K A++ D I S ITG ++ Sbjct: 130 AGVEVVTGVLAAEAEAQNEVFRTVHLRGRPWVLYKTAMTLDGKIATRTGRSRWITGPAAR 189 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V RA A+ VG+ TVL DDP LTCR+ G H+P +++ D + +++ Sbjct: 190 ERVQRWRAHLSAVAVGVNTVLLDDPLLTCRVPG--GHTPHKVVFDTVARTPPTAQLFHPD 247 Query: 241 LLAP----VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLV 292 + VTE A R + ++ D++ L L GV +LL+ Sbjct: 248 PQGEAARVTLFVTERAPAARVAALRYRGAEVVVLPETRGRADVRSALAHLKEVGVQTLLL 307 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQI 318 EGG +A SF + VD + ++ Sbjct: 308 EGGGTLAWSFFEVQAVDRVAVFIGPK 333 >gi|224476858|ref|YP_002634464.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421465|emb|CAL28279.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus carnosus subsp. carnosus TM300] Length = 349 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 121/316 (38%), Positives = 167/316 (52%), Gaps = 7/316 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RF+ A++ ++ G T NP+V ++V G ++G G G HAEVQAL+ AG++AR Sbjct: 3 RFLENAIQLAKMAEGQTGVNPAVGSVVVNHGRIVGLGAHLKQGERHAEVQALDMAGDQAR 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T YV+LEPC+HYG +PPC IIE GI +VV + D+ + G + L GI V Sbjct: 63 GGTIYVSLEPCTHYGSTPPCVNKIIEAGISKVVYAM--KDITLDSPGDEILKSAGIEVVY 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 E E + + +V K +TLK++VS D S IT K V RA Sbjct: 121 QHEVEAEKMYKDFFAAKVSKIPEVTLKVSVSLDGKQATDSGQSQWITNPGVKQDVLKNRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAIL G GTV AD+P LT R+ G E P+R+ILD LS I L PV + Sbjct: 181 RHDAILTGAGTVEADNPSLTVRIEG--ERQPIRVILDKSGSLSFQENIFHD-QLTPVWLY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ + NINII + + +L L +G+ SL VE G V+ F+ S V Sbjct: 238 TENNA--VQNKEHLDNINIIQLEECSVHNILRDLYNKGIGSLYVEAGPNVSSQFLQSECV 295 Query: 309 DSIILYRSQIVIGEGG 324 ++I+Y + VIG G Sbjct: 296 QTLIIYYAPKVIGGSG 311 >gi|317052209|ref|YP_004113325.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum S5] gi|316947293|gb|ADU66769.1| riboflavin biosynthesis protein RibD [Desulfurispirillum indicum S5] Length = 377 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 181/371 (48%), Gaps = 23/371 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 M S+ M AL +R +G TS NP V +IV G ++G G A G HAEV A Sbjct: 1 MTRSAQYEVSMQMALNLARKGLGFTSPNPVVGSVIVDAAGAIVGMGYHAKAGMAHAEVVA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L++AGE+ARGAT YVTLEPC GR+PPC II GI++VV DP+ V+GR L Sbjct: 61 LKDAGEKARGATLYVTLEPCCVQGRTPPCTDAIIRAGIQKVVYAAQDPNPAVAGRSRAIL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E E + + + +ITLK A++ D +A S ITG Sbjct: 121 EAAGIAVESGILEPEARYLNRHFNKHITRQMPYITLKSAITLDGKTAVANGQSRWITGEE 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKII 237 ++ H LR DAI VGIGT++ADDP LTCR G P +I D + ++ ++ Sbjct: 181 ARQDGHFLRGIHDAIAVGIGTIIADDPLLTCRHGGKTALPHPDVVIFDTFLRTPRNAAVL 240 Query: 238 K-TALLAPVIIVTEND--DPVLALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTS 289 + + VIIVT + + A I +I L++ L + G+TS Sbjct: 241 RPSEAERRVIIVTSSTMMESDTATRLLGAGIQLIGLPPASQGLPLQQAFAALYEQYGITS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--------IPSPLEEGYLEKNFMCV 341 +LVEGGA + + I L D ++Y + + G+ G +P+P Sbjct: 301 VLVEGGAGLTSAIIKETLEDEHVIYMAPKLFGDEGMTWSGSLKVPTP----DKAYQLRLH 356 Query: 342 RRDYFGSDVCL 352 + G+D+ + Sbjct: 357 SVERLGNDIRI 367 >gi|190571227|ref|YP_001975585.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357499|emb|CAQ54935.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 405 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 134/396 (33%), Positives = 189/396 (47%), Gaps = 48/396 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A + Sbjct: 3 DDYFMSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 AT YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI + Sbjct: 63 THSATMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M+ E ++ + T + R I KIA + D I S IT ++N VH Sbjct: 123 EQGIMQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHE 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL--- 242 LRA+ DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA Sbjct: 183 LRAKYDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYN 242 Query: 243 ---------------------------------------APVIIVTENDDPVLALAFRKK 263 ++T N Sbjct: 243 HDLSKEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYL 302 Query: 264 NINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +N LK + + L G+T LLVEGG + + L+D +I+ RS ++G Sbjct: 303 VVNSNNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGN 362 Query: 323 GGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 P + G N F V+ F DV + Sbjct: 363 DATPFIGDLGIQSINNCHKFKKVKIIEFSEDVVEVW 398 >gi|114704832|ref|ZP_01437740.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi HTCC2506] gi|114539617|gb|EAU42737.1| riboflavin-specific deaminase / reductase [Fulvimarina pelagi HTCC2506] Length = 381 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 166/367 (45%), Positives = 223/367 (60%), Gaps = 12/367 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEVQ 58 +S+ + RFM+AA+RF H GLT TNPSVA LIV+D ++GRG+TA GG PHAE Q Sbjct: 14 LSAANERFMAAAIRFGFRHAGLTGTNPSVATLIVRDDGAGPRIVGRGITARGGRPHAEAQ 73 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAG ARGA AYVTLEPC+H+GR+PPCA+ ++ G+ RVV DPD RV G+G Sbjct: 74 ALGEAGTLARGAVAYVTLEPCAHHGRTPPCAEALVASGVSRVVSAAADPDPRVDGKGHAI 133 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G+ + R+M E L AYLTR R ITLK+AVS D MIG G G V ITG Sbjct: 134 LEKGGLSVTPRVMAKEAASDLSAYLTRHARNRPQITLKMAVSPDGMIGRKGHGQVFITGP 193 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 I+ Q HL+RA+ DAILVG+GTV DDP L CRL GL+ SP RI+LDP + ++ ++ Sbjct: 194 IANRQTHLVRARHDAILVGMGTVREDDPGLDCRLPGLENRSPRRIVLDPDLTIEPETGLV 253 Query: 238 KTALLAP-VIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSL 290 ++A P I+ + D + + + CD L +L+ L G+ ++ Sbjct: 254 RSARQTPLTIVARGDTDADKRQSLMAAGADFVACDVVPGTGRVALPELMEDLGATGIQNI 313 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 LVEGGA V SF+ + LVD +IL + ++GEGGI SP++ ++ F R FG D Sbjct: 314 LVEGGATVGESFLEADLVDRLILVEGETMVGEGGIVSPIDVASGKQRFKLTERLRFGPDQ 373 Query: 351 CLEYIGK 357 E+ + Sbjct: 374 WFEFERR 380 >gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ] gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ] Length = 361 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 121/357 (33%), Positives = 175/357 (49%), Gaps = 23/357 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL +R + T NP V C+IV G ++G G G PHAEV AL +AGE ARGA Sbjct: 1 MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQAGETARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPCA+ ++ G+ RVV + DP+ +VSGRGL L Q GI + + Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVEVGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + ++ R + +K+A+S D MA S ITG ++ V LRA+ Sbjct: 121 LEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRLRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 S +L G TVL D LT R L + P+R+++D ++ LD + Sbjct: 181 SSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLDVPFFQ- 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295 P ++ T + + +R ++ D + LL L RG +LVE G Sbjct: 240 --AGPALVATVSA--EREVDYRAAGHELLAVPGEDGRVDLPALLAELAARGANEVLVEAG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 +A +F LVD L+ + +G P PLE + G D Sbjct: 296 PRLAGAFARQGLVDEYRLFVAPKFLGSTARPLLELPLERMAEARELKIRDIRAVGED 352 >gi|298482442|ref|ZP_07000628.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22] gi|298271421|gb|EFI12996.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D22] Length = 351 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 118/357 (33%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + S NP V +IV +G +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVSPNPMVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E K + ++T + R ITLK A S D+ I + P+ + ++ Sbjct: 130 VTVGVLEEECKSLIRRFITFNMLHRPFITLKWAESADHFIDIERTDGKPVVLSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPALTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKNI I + LK+++ L R + SLLVEGG + Sbjct: 246 VPTLIFTEKQQP------EKKNITYITINFSHNPLKQIIEALYQRKIQSLLVEGGRQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI++ L D + + + G+ +P ++ NF ++F + Y+ + Sbjct: 300 SFIDNELWDEAYIEKCPSRL-HSGVKAP----QMDDNFSYSIEEHFERQIW-HYVRR 350 >gi|116623314|ref|YP_825470.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Solibacter usitatus Ellin6076] gi|116226476|gb|ABJ85185.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Solibacter usitatus Ellin6076] Length = 369 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 111/319 (34%), Positives = 162/319 (50%), Gaps = 6/319 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +M AL +R L S NP V +IV+DG V+GRG Y G HAE+ AL +AGE+ARG Sbjct: 5 YMREALDLARKGRSLASPNPLVGAVIVRDGKVVGRGFHTYAGLHHAEIIALAQAGEQARG 64 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI--IVD 127 A Y+ LEPCSH GR+PPC +I GI RVV + DP+ V+G+G L + GI ++ Sbjct: 65 AEIYLNLEPCSHQGRTPPCVDALIRAGIARVVAPLSDPNPLVAGQGFARLREAGIEVVMA 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 +E +L + R +TLK A++ D I IT ++ V LR Sbjct: 125 DEFAAEAGKLNEPFLHFMLTGRPLVTLKTAITLDGKISAPDDNRGWITSERARAHVQELR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DAIL GIGTVLADD L+ R + +RI++D +L LDSK+ ++A + I Sbjct: 185 HDHDAILTGIGTVLADDCLLSDRTGHPRCRPLLRIVMDSQLRLPLDSKMARSANGDVLAI 244 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 T + I ++ D DL+ ++ L SL++E G+ + S + Sbjct: 245 TTSAASSERRKMLESRGIQVLVFDGPGGRADLRSIVEWLGRHRYLSLMIEAGSKLNWSAL 304 Query: 304 NSRLVDSIILYRSQIVIGE 322 +VD + Y ++G Sbjct: 305 EGNVVDRVFFYYGPKILGG 323 >gi|213962287|ref|ZP_03390550.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena Capno] gi|213954953|gb|EEB66272.1| riboflavin biosynthesis protein RibD [Capnocytophaga sputigena Capno] Length = 323 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 112/325 (34%), Positives = 173/325 (53%), Gaps = 11/325 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67 + ++ + +G T NP V C+IV DG +IG G G PHAEV+A+ ++ Sbjct: 1 MIKRCIQLAYNGLGTTYPNPLVGCVIVHDGKIIGEGWHQKAGEPHAEVRAIASVKDKSLL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YV+LEPC+HYG++PPCA II I RVV+ DP +V+GRG++ L G + Sbjct: 61 AESTLYVSLEPCNHYGKTPPCADLIITHRIPRVVIGTTDPFAKVAGRGIEKLRDAGCEVT 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKNQV 183 +ME E + + T +KR +I LK A + D I A V IT ++ +V Sbjct: 121 VGVMEKECRELNKRFFTFHEKKRPYIFLKWAETADGFIAPAHKDTLAPVWITDVYTRQEV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H +R++ AILVG+GTVLAD+P L R +P+R+I+DPH + + K+ L Sbjct: 181 HKMRSEEQAILVGVGTVLADNPSLDTR--DWYGKNPLRVIIDPHLRSPKEFKVWND--LQ 236 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P + +T + + I I +++ +L R + SL+VEGGA FI Sbjct: 237 PTLFITNKEKVSDKNYGVQTEIIGIDFTHNVPQQICDLLYQRNIQSLIVEGGAYTLQQFI 296 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328 N+ L D + +Y+S++ G G+ +P Sbjct: 297 NAGLYDEMRIYKSEVSFG-KGVKAP 320 >gi|62260407|gb|AAX77904.1| unknown protein [synthetic construct] Length = 390 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 108/325 (33%), Positives = 162/325 (49%), Gaps = 5/325 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + + + D +M AL + S NP V C+IVK+G +I G G HAEV AL Sbjct: 25 LEMKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHAL 84 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 85 TKAVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLK 144 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 145 NAGITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQA 204 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 205 FVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLD 264 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 A I V +A + I L LL + G+TSLLVEGG Sbjct: 265 QRHAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGG 324 Query: 296 AAVAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 325 NKTLNSFINQKLVNEFYTYLAPVII 349 >gi|328675280|gb|AEB27955.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Francisella cf. novicida 3523] Length = 355 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 105/323 (32%), Positives = 161/323 (49%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALSLANRGRLTVSPNPMVGCIIVKNGTIISEGWHETVGKAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GAT YVTLEPC H+GR+PPC +I+ GI++VV+ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATVYVTLEPCCHHGRTPPCTDTLIKAGIKKVVIATLDPNPKVAGKGVKKLKDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D + + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQKTKKPFVYAKWAMSLDGKVAVNNDDSKKISSHQAFI 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T+ D+P L R+N + P R IL H + + Sbjct: 181 NTHQLRNICDAILIGKQTLTDDNPSLDVRININKIKHPTRFILSNHLTTINHNWQVLDQS 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I + +A + I L LL + G+TSLLVEGG+ Sbjct: 241 HAKTIFICSKISAQIATKLNQLGIEYWLLPQSQNQVCLNTLLEKMGNIGITSLLVEGGSK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|126727883|ref|ZP_01743711.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2150] gi|126702824|gb|EBA01929.1| riboflavin biosynthesis protein RibD [Rhodobacterales bacterium HTCC2150] Length = 364 Score = 312 bits (801), Expect = 3e-83, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 189/360 (52%), Gaps = 13/360 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M A+ +G T NP+V C+IVKDG V+ R TA GG PHAE QAL+ G Sbjct: 4 ATDERWMRLAISLGAQRLGQTWPNPAVGCVIVKDGRVLARAATAPGGRPHAETQALD--G 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A+G+T YV+LEPC+H G++PPCAQ +I+ + RVV + DPD RV G+G LS GI Sbjct: 62 INAKGSTVYVSLEPCAHTGKTPPCAQALIDARVARVVYGMRDPDCRVDGKGTSMLSAAGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E + ++T + R +TLK+A S D I A S ITG ++ V Sbjct: 122 AVTGPVLEKQALAANQGFITAITKGRPALTLKLATSFDGRIATASGQSQWITGPNARRAV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H++RA DAI+VG GT ADDP LT R+ G+ H P+R+I + +D ++ A Sbjct: 182 HMMRANHDAIMVGAGTARADDPTLTQRVGGI-AHQPIRVICTSDLNIPMDGALVGAIKHA 240 Query: 244 PVIIVTENDDPVLAL-AFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAV 298 P+ ++ D A A+ +K +I D+ + L +G+T + EGG + Sbjct: 241 PLWLIHGQDAKASARDAWLQKGAKLIQVPSSPNGLDMTVAMQKLCEKGITRVFCEGGGQL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + ++LVD ++ + + + +G G L+ + F G D+ + Sbjct: 301 AAGLLKAKLVDRLVGFTAGMALGGDGRACVGALNLDAIDETQAFQLENLREIGGDILHIW 360 >gi|56708681|ref|YP_170577.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis SCHU S4] gi|110671153|ref|YP_667710.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis FSC198] gi|134302741|ref|YP_001122709.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis WY96-3418] gi|224457890|ref|ZP_03666363.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis MA00-2987] gi|254371312|ref|ZP_04987314.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|254875556|ref|ZP_05248266.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis MA00-2987] gi|56605173|emb|CAG46304.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis SCHU S4] gi|110321486|emb|CAL09687.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis FSC198] gi|134050518|gb|ABO47589.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis WY96-3418] gi|151569552|gb|EDN35206.1| hypothetical protein FTBG_01094 [Francisella tularensis subsp. tularensis FSC033] gi|254841555|gb|EET19991.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. tularensis MA00-2987] gi|282159932|gb|ADA79323.1| Riboflavin biosynthesis protein RibD [Francisella tularensis subsp. tularensis NE061598] Length = 355 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 161/323 (49%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|330996373|ref|ZP_08320256.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila YIT 11841] gi|329573231|gb|EGG54845.1| riboflavin biosynthesis protein RibD [Paraprevotella xylaniphila YIT 11841] Length = 358 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 116/334 (34%), Positives = 172/334 (51%), Gaps = 16/334 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+ G Sbjct: 2 TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRSVG 61 Query: 65 --EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L + Sbjct: 62 NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQEA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITG 176 GI + ++E+E ++T +R +ITLK A S D + + Sbjct: 122 GIEVTVGVLEAECLALNRRFMTFHTHRRPYITLKWAESADGFMDGLRTDYEKEKPYAFST 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ VH RA AILVG T LAD+P L RL SP+R+++D + L + Sbjct: 182 PYTRMLVHRCRAGHQAILVGRQTALADNPLLNLRL--WPGKSPLRLVVDRNGSLPKHLAL 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEG 294 V + + V L + + + D RD L ++L L V SLLVEG Sbjct: 240 FNDGAETRVYL---DALSVHPLYGEQAGVTCVRLDFSRDILPQVLDDLYHLSVQSLLVEG 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 G + SFI++ L D I + +S + + + G+PSP Sbjct: 297 GRRLLESFISAGLWDEIRVEQSPVWL-KEGVPSP 329 >gi|320354106|ref|YP_004195445.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfobulbus propionicus DSM 2032] gi|320122608|gb|ADW18154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfobulbus propionicus DSM 2032] Length = 368 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 123/365 (33%), Positives = 192/365 (52%), Gaps = 13/365 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL +R +G TS NP+V ++VKDG V+GRG G PHAEV AL +AG +A Sbjct: 6 EWYMELALAEARKGLGRTSPNPAVGAVVVKDGKVVGRGYHHRAGTPHAEVHALADAGPQA 65 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGAT YVTLEPC+H GR+PPC + I+ GI VV+ + DP+ RV+G G +L Q+G+ +V Sbjct: 66 RGATIYVTLEPCNHTGRTPPCTEAILAAGIAMVVIGMADPNPRVAGGGAAYLRQRGLEVV 125 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E + + ++ + +K +S D I +TG S VH L Sbjct: 126 SGVLEQPCRALNYPFIKHSTTGLPWVMMKAGLSLDGKITFRSRQGAALTGEESWRFVHRL 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R Q+DAIL+G+ T + DDP LT RL G+ + P+R++LD +L ++++ A Sbjct: 186 RNQTDAILIGVETAIIDDPSLTTRLEGVADTRDPVRVVLDSCLRLPPQARMLHQRSTAET 245 Query: 246 IIVT-ENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +V + ++ DL +L +L R +TS+LVEGGA + Sbjct: 246 WVVCGSEASSDREEQLVRAGARVLRLALGADGRVDLPAMLRLLGARNLTSVLVEGGAGIH 305 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 + RLVD ++L+ + ++G+ G P + L + R +DV L+ +G + Sbjct: 306 GAMYGQRLVDELLLFYAPFIVGDQGTP-LVSGYSLARRDQAPRL----ADVALQPLGNDF 360 Query: 360 CLQEL 364 + L Sbjct: 361 LFRAL 365 >gi|331005895|ref|ZP_08329246.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC1989] gi|330420291|gb|EGG94606.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC1989] Length = 397 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 117/393 (29%), Positives = 186/393 (47%), Gaps = 40/393 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S+ D RFMS A++ + T NP V C++VK+G VI G G HAE+ AL Sbjct: 1 MTFSADDHRFMSLAIQLAEKGRYTTRPNPCVGCVLVKNGQVISEGWHYRAGEAHAEIHAL 60 Query: 61 EEAG--EEARGATAYVTLEPCSHYGRSPPCAQFI---IECGIRRVVVCVDDPDVRVSGRG 115 ++ +A TAYVTLEPCSH GR+ CA + GI RVV ++DP+ V+G+G Sbjct: 61 QQLPIEVKAENITAYVTLEPCSHQGRTGSCAMALADRTNTGIIRVVYGMEDPNPLVAGKG 120 Query: 116 LQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 L L + G +V+ +ME + + R +R + KIA S D MA S I Sbjct: 121 LAILRESGCVVEGPLMEQQAAALNQGFFRRMQSQRPWVMAKIATSIDGRTAMASGESQWI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--------EHSPMRIILDP 226 T ++ V LRAQS I+ GI ++L D+ L+ R +H P+R++LD Sbjct: 181 TSAPARRDVQRLRAQSCGIISGIDSILHDNSRLSVRREDSDLANIDDILQHPPLRVLLDT 240 Query: 227 HFKL----SLDSKIIKTALLAPVIIVTE------------------NDDPVLALAFRKKN 264 H ++ +L + I + A V++ T D V++ + + Sbjct: 241 HLRIADDDNLSANIFDPSSAAQVLVFTSTAVTDSKMEKVLSLNDSVGDVSVVSPMIKVEQ 300 Query: 265 INIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + L+++LT+L R ++LVE GA + FI++ LVD +I+Y++ +++G Sbjct: 301 VATTETGHLCLEQVLTVLATRYECNTVLVETGATLLGGFIDAGLVDELIIYQAPVLLGSD 360 Query: 324 GIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 L + R G D+ ++ Sbjct: 361 ARALANVSLTRMQEKIALTITDRRMVGDDLRIK 393 >gi|58584287|ref|YP_197860.1| pyrimidine deaminase and reductase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418603|gb|AAW70618.1| Pyrimidine deaminase and reductase [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 378 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 188/374 (50%), Gaps = 26/374 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FMS AL + +G + NP+V C+IVKDG+V+G G T GG PHAEV AL+ A Sbjct: 2 IDNHFMSIALSLAEKTLGNVAPNPAVGCIIVKDGVVVGEGHTGIGGRPHAEVAALQSAKG 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GAT YVTLEPC HYG + PC II GI++VVV DPD RVSG G++ L + GI Sbjct: 62 STHGATMYVTLEPCCHYGVTEPCIIEIIRSGIKKVVVAAIDPDKRVSGGGIKALEEAGIT 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M+ E + + T + R I KIA + D I S IT ++N VH Sbjct: 122 VEQGIMQEEAEKLNIGFFTTRKLHRPFIACKIATTLDGKIATFKGDSKWITSGSTRNWVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LRA+ DAI++G T++ DDP LTCRL GL+ SP+R+I+D KL ++KTA Sbjct: 182 ELRAKYDAIMIGSNTLINDDPLLTCRLPGLESRSPIRLIIDSQEKLKEKHNVVKTADKVT 241 Query: 245 VI-----------------IVTENDDPVLALAFR-KKNINIIYCDCRDLKKL-LTILVGR 285 IV ND P+ A N D LK + L ++ Sbjct: 242 TWVIINKKIEKKIKNINYLIVNSNDKPIPASHTGMTSNQGEYSTDKVCLKDMALKLVSEI 301 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMC 340 G+T LLVEGG + + L+D +I+ RS ++G IP + ++ F Sbjct: 302 GITRLLVEGGRVLTTELLKHDLIDRLIICRSGKILGNDAIP-FIGNLEIQSINNCYQFKK 360 Query: 341 VRRDYFGSDVCLEY 354 F D+ + Sbjct: 361 AEIIDFDEDIVEVW 374 >gi|187930956|ref|YP_001890940.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. mediasiatica FSC147] gi|187711865|gb|ACD30162.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. mediasiatica FSC147] Length = 355 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 161/323 (49%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWQVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans CJ2] gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas naphthalenivorans CJ2] Length = 370 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 175/363 (48%), Gaps = 14/363 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D M A+ + + +TS NP V C++ G V+G+G T G PHAE+ AL Sbjct: 1 MELCVPDTEMMPRAVALALAAMRITSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMAL 60 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +A G GATAYVTLEPCSH+GR+ PC +I GI+++V + DP+ VSG+G + Sbjct: 61 RDAAAQGHSVVGATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFE 120 Query: 118 WLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI V+ +E + + +R + K + +K+A S D +A S IT Sbjct: 121 RLRAAGIEVEVGPGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H RA++ A+L GIGTVL D+P L RL P I++D + LD+ + Sbjct: 181 AEARADGHAWRARACAVLTGIGTVLQDNPRLDVRLVS-TPRQPHLIVVDSRLETPLDAHL 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLV 292 + I + A K +IY DL ++ L R + L V Sbjct: 240 FIAGRA--LYIYAAVQNEAKKQALEAKGATVIYLPDANGKVDLTAMVQDLGRREINELHV 297 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIG-EGGIPS--PLEEGYLEKNFMCVRRDYFGSD 349 E G+ + S I + LVD +LY + ++G G+ S PL+ D G+D Sbjct: 298 EAGSKLNGSLIRAGLVDEFLLYLAPKLLGPGQGMASFGPLQALSDAVELQFQSTDRVGAD 357 Query: 350 VCL 352 + + Sbjct: 358 LRI 360 >gi|221135084|ref|ZP_03561387.1| riboflavin biosynthesis protein RibD [Glaciecola sp. HTCC2999] Length = 381 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 119/379 (31%), Positives = 182/379 (48%), Gaps = 42/379 (11%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S+FD M+ ALR ++ + + NP V C+I DG +IG G G HAEV AL Sbjct: 4 TFSAFDYAMMARALRLAKQGIYTAAPNPMVGCVITLDGEIIGEGHHQQAGTAHAEVNALW 63 Query: 62 EAGE----------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + E + + ATAYVTLEPCSH GR+ PCA +I+ I RVV+ + DP +V Sbjct: 64 QVNELIAQGKLVATQLKEATAYVTLEPCSHTGRTGPCADALIDAYIGRVVIAMQDPYSQV 123 Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170 SGRG+ L + I + ++ +E +L+ +R +T K+A S D I + Sbjct: 124 SGRGIAKLQRANIQVEVGLLAAESNALNRHFLSLVERQRPFVTAKLATSLDGKIALDNGV 183 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH------------- 217 S ITG ++ V RAQ IL G TV+ADDP+L RL L E+ Sbjct: 184 SQWITGPEARQDVQAHRAQHMCILTGSQTVIADDPQLNVRLAELPENVQQTLAANPLAQY 243 Query: 218 -SPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 P+R I+D +S +I++ A AP + T + NI + DL Sbjct: 244 TQPLRAIIDSQRLISEQYQIVRDANTQAPTHVFTPD------------NIPLNGNGKCDL 291 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEE 331 +L L +G+ S+ VE GA + + +N+RL+D +I+Y++ +++G + L + Sbjct: 292 SAVLDALGQQGINSVWVEAGAGLVGAMLNARLLDELIIYQAPLLLGADAKDAINIAKLTQ 351 Query: 332 GYLEKNFMCVRRDYFGSDV 350 + G D+ Sbjct: 352 MDQRIELDIIDTRKVGQDI 370 >gi|99081975|ref|YP_614129.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ruegeria sp. TM1040] gi|99038255|gb|ABF64867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Ruegeria sp. TM1040] Length = 358 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 187/357 (52%), Gaps = 11/357 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL R G T NP+V C+IV+ G V+GRG T GG PHAE AL +AG ARGA Sbjct: 1 MGLALSLGRRGQGRTWPNPAVGCVIVQKGRVVGRGWTQPGGRPHAEPMALAQAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYV+LEPC+H+G++PPCAQ +IE G+ RVV ++D D RVSG+G + L GI + + Sbjct: 61 TAYVSLEPCAHHGKTPPCAQALIEAGVARVVAAIEDSDPRVSGQGFEMLRAAGISVTTGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + + + R +TLK+A S D I S ITG ++ VH +RA+ Sbjct: 121 RAEEAGFDHEGFFLKTEQGRPFVTLKLAASFDGRIATGSGQSQWITGPEARRVVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT ADDP LT R G+ + P R+++ H L L SK+ ++A P+ + Sbjct: 181 HDAVMVGAGTARADDPSLTVRDLGIDQ-QPARVVVSRHLDLPLISKLARSAAEVPLYLCH 239 Query: 250 -ENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ +++ C+ D +L L G+T + EGG A+A S + Sbjct: 240 GTGADTERLRAWDGLGAHLLPCNALGTQLDPHDVLQQLGSVGLTRVFCEGGGALAASLLA 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 LVD ++ + + + IG G+PS + F G+D+ + Sbjct: 300 HDLVDELVGFSAGLTIGAEGLPSIGALGIGHLSEAPRFDLHETRPIGADILHRWRRP 356 >gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44] gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44] Length = 362 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 166/353 (47%), Gaps = 12/353 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M+ AL + + L+S NP V C+IV +IG+G T G PHAEV AL +A G + Sbjct: 1 MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGATAYVTLEPCSH+GR+ PC +I GI +VV + DP+ +V+G+G + L G+ + Sbjct: 61 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +E + + +R + + +K A S D + + S IT ++ H Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++ IL GIGTVL D+P + R P ++D + LD+ ++K + Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVRDVD-TPRQPRIAVVDSKLDIPLDAHVLKAPSGCLI 239 Query: 246 IIVTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + + L + + DL +L L RG L VE G + S I Sbjct: 240 YTCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLI 299 Query: 304 NSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 LVD ++ Y++ ++G G + PL+ + G D+ + Sbjct: 300 REGLVDELLFYQAPKLLGTGAMGIANFGPLDSLDQGLPLVFHDVARLGPDLRI 352 >gi|254372095|ref|ZP_04987588.1| hypothetical protein FTCG_01236 [Francisella tularensis subsp. novicida GA99-3549] gi|151569826|gb|EDN35480.1| hypothetical protein FTCG_01236 [Francisella novicida GA99-3549] Length = 355 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALIK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 VGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|330443905|ref|YP_004376891.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58] gi|328807015|gb|AEB41188.1| riboflavin biosynthesis protein RibD [Chlamydophila pecorum E58] Length = 372 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 107/362 (29%), Positives = 175/362 (48%), Gaps = 11/362 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FM A+ T NP V C++VK+G ++ G Y G PHAE A+ + Sbjct: 4 FSEQQQLFMRRAIEIGERGRITTPPNPWVGCVLVKNGKILSEGYHEYPGGPHAEEIAIRK 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A GA Y++LEPCSHYG+ PPC +I+ + V + + DPD RVSG+G++ L Sbjct: 64 AHVSLEGAQVYLSLEPCSHYGKQPPCTDLLIKHRVAEVFIALKDPDCRVSGKGIESLKNV 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E+ + L YL ++ + LK A S D + S IT +++ Sbjct: 124 GIRVHVGLEEARARKSLQPYLYQRSSCSPWVVLKSAASIDGQVADRNSQSQWITCPEARH 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 V +RA S A++VG GTV+AD+P+LT R L P+RI+LD ++ +S++ Sbjct: 184 DVGFIRACSQAVIVGAGTVIADNPKLTARRASGELYARQPLRIVLDSSGRVPKESQVFHL 243 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGG 295 + + T+ + I DL +++ +L + +LVEGG Sbjct: 244 GGEV-LYVTTKRCPSQHLQYLEALGVEIACVKASSSGVDLHEVMRLLANKHFLQVLVEGG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG---YLEKNFMCVRRDYFGSDVCL 352 A V F+ L ++IILY ++G+ P E G + + + + D+ G+ + + Sbjct: 303 ATVHTEFLKHHLANAIILYYGPKILGDQKKPLFKELGDCLHTAQAVLPLSADFVGNSLKV 362 Query: 353 EY 354 + Sbjct: 363 FW 364 >gi|33598380|ref|NP_886023.1| putative riboflavin-specific deaminase [Bordetella parapertussis 12822] gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis] Length = 386 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 181/367 (49%), Gaps = 17/367 (4%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 M S+ D +M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV Sbjct: 1 MNTSTPTDDVSWMRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60 Query: 59 ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AL EA G GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+G Sbjct: 61 ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 L L GI + + + E + R + LK+A S D + S + Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWM 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 TG ++ H RA+S +L G+GTVL DDP+L R H P + ++D F++ D+ Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTS 289 ++ A V++ T D A +N+ +I D DL ++ L + + Sbjct: 240 RLFDDG--AQVLVFTARSDAAKARRMADRNVRVIELPGVRPDRVDLPAVMRWLASQEINE 297 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYF 346 + VE GA ++ + + VD +++Y + +++G+ + PL E + F Sbjct: 298 VHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPV 357 Query: 347 GSDVCLE 353 G+DV L Sbjct: 358 GTDVRLR 364 >gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC 19624] gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC 19624] Length = 377 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 107/362 (29%), Positives = 168/362 (46%), Gaps = 21/362 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M AL + + LTS NP V C+IV +G ++G G T G PHAEV AL +A G + Sbjct: 7 MQRALALAEQGLYLTSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHD 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGATAYVTLEPC+H GR+ PC + + GI +VV ++DP+ +V+G+G L G++V Sbjct: 67 VRGATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVV 126 Query: 127 DRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ + + +R + +KIA S D + S IT ++ H Sbjct: 127 EVGPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHA 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK------- 238 RA++ AIL G+GTV D+P L RL P +++D + + + + Sbjct: 187 WRARACAILTGMGTVREDNPRLDVRLVE-TPRQPRLVVVDSRLETPPTAALFEPHRDTAP 245 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILV-GRGVTSLLVE 293 PV+I D A + + +++ DL LL L R + L VE Sbjct: 246 GREAQPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREINELHVE 305 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDV 350 G + S + LVD +++Y + ++G G + PL G D+ Sbjct: 306 AGHQLNGSLLREGLVDELLIYLAPKLLGAGRGMAQIGPLNTLTDAVTLDYREITQVGPDL 365 Query: 351 CL 352 + Sbjct: 366 RV 367 >gi|298386833|ref|ZP_06996388.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14] gi|298260507|gb|EFI03376.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 1_1_14] Length = 345 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++ Sbjct: 4 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E + + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 124 VTIGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I+ T P + I L +++ +L + + SLLVEGG+ + SF Sbjct: 240 VPTIVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 I++ L D + + + + G+ +P + NF +F + Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 339 >gi|254474397|ref|ZP_05087783.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11] gi|214028640|gb|EEB69475.1| riboflavin biosynthesis protein RibD [Ruegeria sp. R11] Length = 358 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 188/354 (53%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL R G NP+V C+IVKDG ++GRG T GG PHAE +AL AG ARGA Sbjct: 1 MSLALSLGRRGQGQCWPNPAVGCVIVKDGRIVGRGWTQPGGRPHAEPEALARAGALARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYV+LEPC+H+G++PPCAQ +I+ G++RVV ++D D RVSG G L GI + + Sbjct: 61 TAYVSLEPCAHFGKTPPCAQALIDAGVKRVVAAIEDSDPRVSGHGFAMLRDAGIEVTTGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + + + R +TLK+A S D I A S ITG ++ VH +RA+ Sbjct: 121 CADEAARDHAGFFLKTEQGRPFVTLKLANSFDGRIATATGESKWITGPDARRAVHAMRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG GT ADDP LT R G+ P+R+++ H L L ++ +TA P+ I Sbjct: 181 HDAVMVGGGTARADDPSLTVRDMGIS-RQPVRVVISRHLDLPLMGQLARTAKDVPLWICH 239 Query: 250 -ENDDPVLALAFRKKNINIIYCDCRDL----KKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D A+ +I+C L +L L G+T + EGG+ +A S + Sbjct: 240 GSGADADRLRAWEGVGATLIHCASDGLQLEAADVLQQLGQAGLTRVFCEGGSGLAASLLK 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEY 354 LVD +I + + +VIG GG+ S E F + + G D+ + Sbjct: 300 QDLVDELIGFTAGVVIGGGGLSSIGSLGHEALADAPRFDLIEQTQIGPDLLHRW 353 >gi|253571299|ref|ZP_04848706.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6] gi|251839252|gb|EES67336.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 1_1_6] Length = 345 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 18/349 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + + NP V +IV DG++IG G G HAEV A+ ++ Sbjct: 4 EKYMRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKS 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLSRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 + ++E E + + ++T R ITLK A S D+ I + P+ + ++ Sbjct: 124 VTVGVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R +P+RI+LD L ++ Sbjct: 184 VHKKRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I+ T P + I L +++ +L + + SLLVEGG+ + SF Sbjct: 240 VPTIVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSF 295 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 I++ L D + + + + G+ +P + NF +F + Sbjct: 296 IDAELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 339 >gi|325846504|ref|ZP_08169419.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481262|gb|EGC84303.1| riboflavin biosynthesis protein RibD [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 359 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 161/356 (45%), Gaps = 16/356 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T NP V ++VKDG +I G G HAEV E Sbjct: 3 DKYYMKKCFDLAKNARGKTLKNPLVGAVLVKDGKIISTGYHHEYGKVHAEVDCFNNLKEN 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YV LEPCSHYG+ PC II+ I++V++ D + +V GL+ L +KGI + Sbjct: 63 ADGAVLYVNLEPCSHYGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLREKGIEV 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 QTGLLEDEGKKLNEKFFFNIKYNRPLIALKYAQTLDGKISSNTNDSKWISNEFSREYVHR 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS---LDSKIIKTALL 242 LR DAI+VG T++ D+P L R+ P+R+I+D + ++ D KI Sbjct: 181 LRNDYDAIIVGKNTLIHDNPSLNSRIE--NGIDPVRVIVDTNLEIEKNYKDYKIFNLNSD 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I T D L K + + DL+ L+ L + S+LVEGG+ + + F Sbjct: 239 KKTYIATCKDTDNPDLNLIKCK---MKNNHVDLEDLVNKLYEMNIGSILVEGGSILNYDF 295 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + LVD I + S +IG SP ++K F F D+ +E Sbjct: 296 LEEGLVDKIYEFISPQIIGGFNSKSPFYGRGVDKIKDGYKFEIEDVKRFDDDIMIE 351 >gi|332881258|ref|ZP_08448908.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680634|gb|EGJ53581.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 358 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 114/334 (34%), Positives = 171/334 (51%), Gaps = 16/334 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--E 62 + D ++MS ++ +R + NP V +IV DG +IG G G PHAEV A+ Sbjct: 2 TTDEKYMSRCIQLARNGFYGAAPNPMVGAVIVHDGKIIGEGYHVRCGGPHAEVNAIRFVR 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E + +T YV+LEPCSHYG++PPCA I+E GI RVVV DP +V+GRG++ L + Sbjct: 62 NPELLKESTIYVSLEPCSHYGKTPPCADLIVEKGIPRVVVGCMDPFAKVAGRGIRKLQES 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP-----ITG 176 GI + ++E+E ++T R +ITLK A S D + + Sbjct: 122 GIEVTVGVLEAECLALNRRFITFHTHHRPYITLKWAESADGFMDSLRTDYEKEKPYAFST 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ VH RA+ AILVG T LAD+P L R+ SP+R+++D L + Sbjct: 182 PYTRMLVHRCRAEHQAILVGRQTALADNPSLNLRM--WPGKSPLRLVIDRRGDLPGHLAL 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEG 294 V + + VL ++ + + D RD L ++L L V SLLVEG Sbjct: 240 FNDGAETRVYL---DVLSVLPPYGKQTGVTCVRLDFSRDILPQILDDLYRLSVQSLLVEG 296 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 G + SFI++ L D I + +S + + + G+PSP Sbjct: 297 GHRLLESFISAGLWDEIRVEQSPVFL-KEGVPSP 329 >gi|15644572|ref|NP_229625.1| riboflavin-specific deaminase [Thermotoga maritima MSB8] gi|148270243|ref|YP_001244703.1| riboflavin biosynthesis protein RibD [Thermotoga petrophila RKU-1] gi|281412422|ref|YP_003346501.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila RKU-10] gi|4982410|gb|AAD36891.1|AE001819_14 riboflavin-specific deaminase [Thermotoga maritima MSB8] gi|147735787|gb|ABQ47127.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thermotoga petrophila RKU-1] gi|281373525|gb|ADA67087.1| riboflavin biosynthesis protein RibD [Thermotoga naphthophila RKU-10] Length = 348 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G Sbjct: 3 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI Sbjct: 63 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +++ ++E E K ++T +KR + LK A + D I S IT + + +V Sbjct: 122 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242 H +R A+LVG GTVL D+P+LTCRL + +P+R+ILD L K+ + Sbjct: 181 HEMRNIYSAVLVGAGTVLKDNPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A VI+ TE+++ K ++ +L L R + S+LVEGG+ V F Sbjct: 237 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 290 Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 ++ D + + S + G+G L + + F V ++ S+ +E C Sbjct: 291 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMRP---C 345 Query: 361 LQE 363 +E Sbjct: 346 SRE 348 >gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T] gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T] Length = 365 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 120/348 (34%), Positives = 181/348 (52%), Gaps = 15/348 (4%) Query: 15 LRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 L+ + + TS NP V C+IV+DG +G G A G HAEV AL +AG ARGATAYV Sbjct: 15 LQLAARGLDTTSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAAARGATAYV 74 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE- 133 TLEPCSH+GR+PPCA +IE G+ RV+ ++DP+ V+GRGL L GI + +E Sbjct: 75 TLEPCSHFGRTPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLLAEA 134 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + +++R R + LK+A + D + S ITG ++ H RA++ AI Sbjct: 135 AQELNIGFVSRMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARACAI 194 Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 L GIGTV DDP+L R + E P+RI++D ++S ++I++ P++I T + D Sbjct: 195 LTGIGTVREDDPQLGVR-DVPCERQPLRILVDARLEVSPQARILQGE---PILIATGSTD 250 Query: 254 PVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 R I++ DL LL +L RG+ L VE G + S + VD Sbjct: 251 QARIDMLRAAGHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVD 310 Query: 310 SIILYRSQIVIGEGG-----IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 +++Y + +++G+ +P+ L G D+ L Sbjct: 311 ELLIYLAPMLVGDAAQGLFNLPA-LTRLEGATRLDIRDLRRIGPDLRL 357 >gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharophagus degradans 2-40] gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharophagus degradans 2-40] Length = 365 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 115/365 (31%), Positives = 184/365 (50%), Gaps = 14/365 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 S D RFM+ A++ +R T+ NP V C++V ++G G G HAEV A+ Sbjct: 3 NYSVADQRFMTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAI 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG ARG TAYVTLEPCSH G++ PC + ++ G+ RVV ++DP+ +V+GRGL L Sbjct: 63 ADAGAAARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLE 122 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E + ++ R + I +K+A+S D MA S IT + Sbjct: 123 AAGIQVDGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSPRA 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ V LRA+S A++ G+ +VL DDP LT RL+ P+R+I+D +L D+ I+ Sbjct: 183 RDDVQRLRARSCALITGVDSVLLDDPSLTVRLSD-DARQPLRVIVDSKLRLPKDAAILSQ 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 +I T + + + I +D L+ L L + +LVE G Sbjct: 242 P--GKTVIATCANVNQAQSPYG--DTEIWTLPEKDGRVSLQALARKLAQQECNEVLVETG 297 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 A +A +F++S LVD +++Y + ++G P P+ + + G + + Sbjct: 298 ATLAGAFVSSGLVDELVIYMAGKLLGSTARPLFDIPISKMSAQLPLSITDIRAIGDNWRI 357 Query: 353 EYIGK 357 I Sbjct: 358 TAIPD 362 >gi|158422887|ref|YP_001524179.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571] gi|158329776|dbj|BAF87261.1| riboflavin biosynthesis protein [Azorhizobium caulinodans ORS 571] Length = 384 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 144/367 (39%), Positives = 202/367 (55%), Gaps = 15/367 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQAL 60 D M+ AL + +G T NPSV ++V+ ++GR TA G PHAE AL Sbjct: 17 EEDEALMAEALAVGQLGLGRTWPNPSVGAVVVRPTSAGPQILGRAGTAPAGRPHAEPLAL 76 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+ ARGAT YVTLEPCSH+GR+PPCA +I GI RVV V+DPD RV GRG+ + Sbjct: 77 AQAGDAARGATLYVTLEPCSHFGRTPPCADAVIAAGITRVVAAVEDPDPRVRGRGVARMR 136 Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E + HA +++R R H+ LK+AVS D G+ G ITG + Sbjct: 137 AAGLWVTVGVGAERALEDHAGHISRVTRGRPHVLLKMAVSADGKAGLEGPRPAAITGEEA 196 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +VHL+RA +DAI+VGIGTVLADDP+LT RL G++ SP+RI+LD +L +++T Sbjct: 197 RARVHLMRAHADAIMVGIGTVLADDPQLTVRLPGMEGRSPVRIVLDGDLRLPTTCGLVRT 256 Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVE 293 A PV + D P A + ++ DL ++ +L GVT L+VE Sbjct: 257 AEQVPVWAIAAEDAPAEREKALVDAGVQVLRAPRAASGRLDLPAVMKLLGLLGVTRLMVE 316 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSD 349 GG VA + ++ LVD + + RS +G GG+ + PL F V R G D Sbjct: 317 GGPQVAAALLDEGLVDEVAVLRSPDALGAGGLDALAGRPLARLTEPVGFAVVERTELGRD 376 Query: 350 VCLEYIG 356 + Sbjct: 377 SLMRLRR 383 >gi|217978262|ref|YP_002362409.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2] gi|217503638|gb|ACK51047.1| riboflavin biosynthesis protein RibD [Methylocella silvestris BL2] Length = 370 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 132/365 (36%), Positives = 197/365 (53%), Gaps = 12/365 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D RFM+AA+ +R +G+ + NP+V LIVKDG+V+ RG T GG PHAE +AL Sbjct: 1 MSQVDADERFMAAAIALARRGLGVCAPNPAVGALIVKDGVVLARGWTQAGGRPHAEAEAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG+++RG+T YVTLEPCSH+G++PPCA+ +I GI RV ++DPD RV+GRG + L Sbjct: 61 RQAGDKSRGSTLYVTLEPCSHHGKTPPCAEAVIASGIARVASAIEDPDPRVAGRGHELLR 120 Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFI 178 G I+ + ++ R + R ITLK+A++ D + ITG Sbjct: 121 AAGLIVRTGVCAQAALRANLGHVLRVTQNRPLITLKLAMTADGFVAGGPNEPRLSITGEA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VHL+RA DAIL+G+GT LADDP LT RL GL++ P+RI+LD ++S S+++ Sbjct: 181 ANGAVHLMRAMYDAILIGVGTALADDPLLTVRLPGLEQRRPLRIVLDSALRISPASRLVA 240 Query: 239 TALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLV 292 TA P +I+ P A +N+ + DL+ L +L RG+T + Sbjct: 241 TARSHPTLIIAGEAAPAANEARLVAENVAVARVPTDGGGRLDLRAALGLLASRGLTRIFC 300 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGS 348 E G +A + + D II+ SQ + G+ + + V + G Sbjct: 301 EAGPTLAEALLREDAADDIIMLTSQKRLARPGLCGFTAERINALEDGSRYRLVEQRAIGD 360 Query: 349 DVCLE 353 D+ Sbjct: 361 DLLTR 365 >gi|254375242|ref|ZP_04990722.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548] gi|151572960|gb|EDN38614.1| hypothetical protein FTDG_01434 [Francisella novicida GA99-3548] Length = 355 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 108/323 (33%), Positives = 162/323 (50%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H+GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + P R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHMTTIDHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISAQVATKLNQLGIEYWLFPQSQHQVCLDTLLEKMGNIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella petrii DSM 12804] gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella petrii] Length = 380 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 115/372 (30%), Positives = 175/372 (47%), Gaps = 17/372 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 D +M AL +R + T+ NP V C+IV+DG V+G G T G PHAE+ AL +A Sbjct: 7 PDDLIWMRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAA 66 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 GE +GAT YVTLEPCSHYGR+PPCA + G RVVV + DP+ +V G+GL L Sbjct: 67 ARGESVQGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRA 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + E ++ R +K+A S D + S ITG ++ Sbjct: 127 AGIAVTSNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H RA+S +L G+GTVL D+P L R +P + ++D F + D+++ Sbjct: 187 ADGHAWRARSCVVLTGMGTVLKDNPRLNVRAVE-TPRAPRKAVVDGDFAIPEDARLFDG- 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGG 295 A VII T D A +N ++ DL ++ L + VE G Sbjct: 245 --AEVIIFTARTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAG 302 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI--PSPLEEGYL-EKNFMCVRRDYFGSDVCL 352 A + + +++ +D +++Y + +++G+ PL E + G D+ L Sbjct: 303 AGLGGALMSAGCIDELLVYLAPVLLGDAAAMLRLPLIEHLDHARRLEFTDTARIGPDLRL 362 Query: 353 EYIGKNLCLQEL 364 + Q L Sbjct: 363 R-ARDSTRWQAL 373 >gi|153808975|ref|ZP_01961643.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185] gi|149128308|gb|EDM19527.1| hypothetical protein BACCAC_03276 [Bacteroides caccae ATCC 43185] Length = 348 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 181/360 (50%), Gaps = 23/360 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + + NP V +IV DG +IG G G HAEV A+ +E Sbjct: 4 EKYMRRCIELAKNGLCNAAPNPMVGAVIVCDGRIIGEGYHIRCGEAHAEVNAIRSVKDES 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQ 182 ++ ++ESE + + ++T R +ITLK A S D+ I + P+ + ++ Sbjct: 124 VIVGVLESECRQLIRRFITFNTLHRPYITLKWAESADHFIDLERTDGQPVVLSSPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+S AI+VG T L D+P LT R +P+R++LD L D ++ Sbjct: 184 VHKRRAESVAIMVGRRTALLDNPSLTVR--NWYGRNPIRVVLDRTLSLPNDLQLFDGN-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD-CRDL-KKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ T N P KNI I D +L +++ L R + SLLVEGG+ + Sbjct: 240 VPTLVFTANKHP------EAKNITYITIDFNHNLFTQIMEELYQRKIQSLLVEGGSQLLQ 293 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SFI + L D I + + + G+ +P + F ++FG YI ++ Sbjct: 294 SFIANELWDEIYIEKCPNKL-YSGVKAP----EICDKFSYSTEEHFGRQ-FWHYIHQDKL 347 >gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 384 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 185/382 (48%), Gaps = 30/382 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +++ A + T NP+V C+IV + ++G G G HAE+ AL+ Sbjct: 2 INKEDLTYLNRAFNLAELGKFTTHPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKL 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ A+G+T YVTLEPCSH+G++P CAQ +I ++ V+ DP+ VSG+G L Sbjct: 62 AGKYAKGSTVYVTLEPCSHHGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNA 121 Query: 123 GIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V + SE I L+ + R ITLK+ S D S IT S+ Sbjct: 122 GIKVKYNIMSEKSIKLNLGFFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRK 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230 V +LRA+S AIL TV+ D+ +LT R N L +E P+RII+D K+ Sbjct: 182 DVQVLRAKSGAILSSAKTVIEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKI 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------CRDLKKLLTIL 282 IIK +I + + + L K I C DL KL+ +L Sbjct: 242 LNSHDIIKHKG---IIFLVRSLNDNLTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILL 298 Query: 283 VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL----EEGYLEKNF 338 + S+L+E GA ++ SF+ S L+D IILY+S ++GE G+P + L F Sbjct: 299 GKNEINSVLIESGANLSGSFLLSGLLDEIILYQSPKILGEKGLPLFFLHKSFKLNLSPKF 358 Query: 339 MCVRRDYFGSDVCLE---YIGK 357 + G DV + YI K Sbjct: 359 VISDVCRIGEDVRFKLHPYIRK 380 >gi|254516856|ref|ZP_05128914.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3] gi|219674361|gb|EED30729.1| riboflavin biosynthesis protein RibD [gamma proteobacterium NOR5-3] Length = 365 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 121/365 (33%), Positives = 187/365 (51%), Gaps = 14/365 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + NP V C++V+D ++G G T G HAEV AL+ AG+ AR Sbjct: 1 MARALRLAERGKYWARPNPHVGCVLVRDSGIVGEGFTQPAGGDHAEVVALKSAGDAARDC 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H GR+PPC+Q +IE G+ RVVV + DP+ +V G GL+ L+ GI + + + Sbjct: 61 TAYVTLEPCAHVGRTPPCSQALIEAGVARVVVGLKDPNPKVDGGGLRDLAAAGIEVSEGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M ++ ++ L +L RQ R + +K+A+S D MA S ITG ++ V LRA+ Sbjct: 121 MAAQVELQLAGFLARQRRGRPRLRIKLAMSLDGRTAMASGESQWITGADARRDVQKLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCR-------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 S AIL GIGTVLADD LT R L + +R++ D + D+ +++ A Sbjct: 181 SCAILTGIGTVLADDCALTVRDAFFDEELLPPPQRRAIRVVADTRLRTPPDAAVLQGAQ- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINII-YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P +++ ND + + + D ++L+ L R +L+E G +A + Sbjct: 240 -PSLLLHANDAVCPGSLTGAARLALPSPAEGLDPAQILSALADRECNEILLESGPTLAGA 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + S L D +I+Y + +++G P P V R G D + + Sbjct: 299 MLQSGLADQLIVYMAPVLLGSRARPLMELPFNRMAEALRLRLVDRRQMGVDQRFVFEPRT 358 Query: 359 LCLQE 363 +E Sbjct: 359 FESKE 363 >gi|268317615|ref|YP_003291334.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM 4252] gi|262335149|gb|ACY48946.1| riboflavin biosynthesis protein RibD [Rhodothermus marinus DSM 4252] Length = 368 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 170/364 (46%), Gaps = 25/364 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-----G 64 M L + G S NP V ++V DG V+ G G PHAE A+EEA Sbjct: 1 MVRCLELAFRGAGRVSPNPMVGAVLVDTDGQVLAEGWHDRYGGPHAERVAIEEALRRHGP 60 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E R AT YV LEPC+HYG++PPCA FII GI RVVV + DP +V+GRG+ L G+ Sbjct: 61 EALRRATLYVNLEPCAHYGKTPPCADFIITHGIPRVVVGMVDPFPQVAGRGIARLRAHGV 120 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E+ + F A++ R +TLK+A + D + S I+G ++ V Sbjct: 121 QVEVGVLEAACRRFNEAFVHHVETGRPLVTLKMAQTLDGFVATRTGQSRWISGERARKLV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA D +LVG GT ADDP LT R ++ P+RI+LD L ++ A Sbjct: 181 HCWRAVLDGVLVGSGTAAADDPALTVR--HVEGRQPVRIVLDRTGGLPPTLRLFTDEQAA 238 Query: 244 PVI-IVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRG------VTSLLV 292 + IV P A ++ + R DL+ LL L G + SLLV Sbjct: 239 RTLAIVGPGARPAYAALLQQAGGRVWTLPLRDGHLDLEALLERLGREGGPDGRPLQSLLV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 E G +A + LVD L+ + + GE G+P + G F R G Sbjct: 299 EAGPRLATALFRQGLVDRFFLFIAPRLFGE-GVPLLNDLGVRAVDEGPRFEAHRWVEVGE 357 Query: 349 DVCL 352 D+ Sbjct: 358 DLLF 361 >gi|284037818|ref|YP_003387748.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74] gi|283817111|gb|ADB38949.1| riboflavin biosynthesis protein RibD [Spirosoma linguale DSM 74] Length = 352 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 183/368 (49%), Gaps = 27/368 (7%) Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPH 54 M VS S D RFM AL + G S NP V C+I +IG G G H Sbjct: 1 MNVSGLSVDERFMRRALELATLGRGHVSPNPMVGCVITHGSGSQERIIGEGWHKRYGDWH 60 Query: 55 AEVQALEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 AEV A+ E AT YVTLEPCSH+G++PPCA +IE ++RVV C DDP+ Sbjct: 61 AEVNAVNSVLPEHQQLLSEATVYVTLEPCSHWGKTPPCADLLIERHVKRVVCCNDDPNPL 120 Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 VSG+G L GI + ++ +G++ + T +KR +I LK A + D I AG Sbjct: 121 VSGQGFAKLRAAGIQVETGVLAEQGRLLNARFFTFFEQKRPYILLKWAETADGFIAGAGG 180 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 V I+G ++ VH R + DAILVG T D+P L RL + P R++LD + Sbjct: 181 QPVKISGDLAHRLVHRWRGEEDAILVGANTARLDNPRLNTRL--WEGKDPTRVVLDRNLT 238 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L+ D + + P ++ + L N+ + + L ++++ L R V S Sbjct: 239 LTTDLHLFDGSQ--PTLVYHASQTDALPDL---PNVQYVVAES--LYQVMSDLYQRKVQS 291 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +LVEGGA V ++F+ + L D + ++RS+ ++G G+ +P G + R+ G D Sbjct: 292 VLVEGGAVVLNAFMEAGLWDEMRVFRSRTMLG-NGVKAPTVRGIIH------SREKVGDD 344 Query: 350 VCLEYIGK 357 Y+ Sbjct: 345 ELTSYMKP 352 >gi|241667512|ref|ZP_04755090.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876058|ref|ZP_05248768.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842079|gb|EET20493.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 356 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 14/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++ Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ + + + Q ++ + K A+S D I + G S I+ + Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSNEAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+ ++ P+R I+ + S + Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPSLDVRIQLSKKKHPVRFIISNNLSEVDKSWRVLDQN 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISAQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +FIN +L++ Y S +VI ++ + + G D+ + K Sbjct: 301 TLENFINQKLINEFATYLSPVVIAGCN---------PKEKLIFQDVSFLGEDLLINSYFK 351 Query: 358 N 358 Sbjct: 352 E 352 >gi|325568121|ref|ZP_08144562.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus ATCC 12755] gi|325158322|gb|EGC70473.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus ATCC 12755] Length = 358 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 173/361 (47%), Gaps = 12/361 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66 +M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+ E+ Sbjct: 4 EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSED 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +T YVTLEPC+H G+ PPC Q II+ GI++VV+ DP+ V+G+G ++L +GI + Sbjct: 64 LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKRFLENQGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+E + Y + ++ LK A++ D I ITG VH Sbjct: 124 LVGIEETEVRRLNPHYNFYHQHQLPYVALKQAITLDGRIAHDAQTRSAITGSAVWQNVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244 R ILVG TVL DDP L + P+RI++D + ++ + AP Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTIE--TSFPPIRIVVDRRGRTLSQPQLALFADDSAP 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I T+ A++ ++++I + + LL L R V SL VEGGAA+ +F+ Sbjct: 242 VWIFTQQA----AVSDLPAHVSVIQLEELTIAALLKELATRQVQSLYVEGGAAIHDAFLA 297 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 S L I Y + +G + S E + + V G DVC+ C Q Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357 Query: 363 E 363 + Sbjct: 358 D 358 >gi|172058721|ref|YP_001815181.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum 255-15] gi|171991242|gb|ACB62164.1| riboflavin biosynthesis protein RibD [Exiguobacterium sibiricum 255-15] Length = 348 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 119/356 (33%), Positives = 180/356 (50%), Gaps = 15/356 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ +R G TS NPSV C+I K G V G G + G PHAEV+AL AGE ARGA Sbjct: 5 MHQAMQLARMLDGQTSPNPSVGCVITKHGKVFGFGAHRFAGGPHAEVEALNMAGEAARGA 64 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVDRM 129 YVTLEPC+H+G++PPC + I+ GI+RV V +D V+G+G++ L G + + Sbjct: 65 DLYVTLEPCNHHGKTPPCTEAILAAGIKRVFVATEDRHAIVAGQGIKRLRDAGLTVEVGL 124 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E F + R ++T+K+A S + ++ IT ++ LRA Sbjct: 125 LEDEAVRFYTPFWQSLKRNRPNVTVKVAQSLNGIVTT--GEQRFITSLAAREAGRELRAT 182 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAILVG TVL DDP LT R E P+RI++D +L ++I + L + Sbjct: 183 HDAILVGSETVLVDDPALTLRTEAGPE--PIRIVVDRRGRLPETAQIFRDGLNTTYWLT- 239 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 + N+ + +++L L +G+ S+L+EGG + +F+ + LVD Sbjct: 240 -----EQPRVSAQSNVTALVGTYATPEQILETLYAQGIHSVLIEGGPTIQSAFLEADLVD 294 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI--GKNLCLQE 363 + +Y++ V+ G+P +E F G DV L Y G C Q+ Sbjct: 295 RLEVYQAPSVL--KGMPGLASAVEIEDRFDLTAVAPIGQDVHLRYARKGDGSCSQD 348 >gi|33593884|ref|NP_881528.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama I] gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama I] gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS] Length = 386 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 181/367 (49%), Gaps = 17/367 (4%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 M S+ D ++ AL +R + T+ NP V C+IV+DG V+G G T G PHAEV Sbjct: 1 MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVC 60 Query: 59 ALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 AL EA G GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RV+G+G Sbjct: 61 ALREAAARGASLAGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 L L GI + + + E + R + LK+A S D + S I Sbjct: 121 LARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWI 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 TG ++ H RA+S +L G+GTVL DDP+L R H P + ++D F++ D+ Sbjct: 181 TGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTS 289 ++ A V+I T D A +N +I D DL ++ L + + Sbjct: 240 RLFDDG--AQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINE 297 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYF 346 + VE GA ++ + + VD +++Y + +++G+ + PL E + F Sbjct: 298 VHVEAGAGLSGALLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPV 357 Query: 347 GSDVCLE 353 G+DV L Sbjct: 358 GTDVRLR 364 >gi|254469111|ref|ZP_05082516.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062] gi|211960946|gb|EEA96141.1| riboflavin biosynthesis protein RibD [Pseudovibrio sp. JE062] Length = 381 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 133/367 (36%), Positives = 210/367 (57%), Gaps = 13/367 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQAL 60 + RFM+AAL + G T NP V ++ KD +++G+G T G HAEV A+ Sbjct: 13 AEHERFMAAALSYGIRAKGRTWPNPPVGAILTKDFGDGPVIVGQGATLPPGGSHAEVLAI 72 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 ++AGE A+GATAYVTLEPC+HYGR+ PCA+ ++ G+ RVV DP+ V+GRG + L Sbjct: 73 KDAGEHAKGATAYVTLEPCAHYGRTGPCARALVAAGVSRVVYGTADPNPAVAGRGKKILE 132 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ ++ ++E E + + +++R + +R + LK+AVS+D IG G G V I+ +S Sbjct: 133 EGGVEVLIGVLEKECREAVRGHISRILNERPFVQLKMAVSKDGYIGKRGAGQVAISSPLS 192 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH +RAQ DAI+VGIGTVL DDPEL+ RL G+ SP ++ D ++ L SK+++ Sbjct: 193 RQLVHAMRAQMDAIVVGIGTVLEDDPELSVRLPGMAHRSPQPVVFDSQARIPLSSKLVQN 252 Query: 240 ALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVE 293 A + +V ++ P A ++ + +I DC L K L L G++ ++VE Sbjct: 253 AESNSLWVVIGDNAPDHRVSALEREGVTVIVNDCLRNGKVCLDKALDALYMHGLSQIMVE 312 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--LEKNFMCVRRDYFGSDVC 351 GGA +AH + LVD +++++ +G G+ EG L+ + + G D+ Sbjct: 313 GGAELAHGLLQQDLVDELLIFQGTSTVGSDGLLPFGFEGLESLQDGYNKQMLRHVGEDLL 372 Query: 352 LEYIGKN 358 Y K Sbjct: 373 WRYTPKE 379 >gi|87125464|ref|ZP_01081309.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. RS9917] gi|86166764|gb|EAQ68026.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. RS9917] Length = 369 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 182/363 (50%), Gaps = 14/363 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ G ++G G A G PHAEV AL +AGE AR Sbjct: 9 WMRRALQLAALVEGQTSPNPLVGAVVLDAHGTLVGEGYHARAGKPHAEVGALVQAGEAAR 68 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H+GR+PPC + +I GIRRVVV + DPD R++G GLQ L G+ ++ Sbjct: 69 GGTLVVTLEPCCHHGRTPPCVEAVIAAGIRRVVVALTDPDPRMAGGGLQRLRDAGLEVIP 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E+E A++ R R LK A+S D + S I+G ++ VH LR Sbjct: 129 GVLEAEAAHQNRAFVHRVKTGRPWGLLKWAMSLDGRTALPNGASQWISGAAARAWVHRLR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL----- 242 A DA++VG GTV ADDP LT R GL+ P+R++L L ++I TA Sbjct: 189 AHCDAVIVGGGTVRADDPLLTSR--GLRTPEPLRVVLSRSLDLPAAARIWTTAEAPTLLA 246 Query: 243 -APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P + + + L A + + LL L RG +L E G A+A + Sbjct: 247 HGPAVEAADAESSPLLEALGAAGVICTALKRCEPLALLEQLASRGCNRVLWECGPALAAA 306 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + V + + + ++G +PL + F + + D+ L+ + ++ + Sbjct: 307 ALQQGCVQELAVVIAPKLLGGLAARTPLADLG----FTALDQVIPLQDLNLQRLERDAVV 362 Query: 362 QEL 364 Q L Sbjct: 363 QAL 365 >gi|170288788|ref|YP_001739026.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2] gi|170176291|gb|ACB09343.1| riboflavin biosynthesis protein RibD [Thermotoga sp. RQ2] Length = 348 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 185/363 (50%), Gaps = 24/363 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G Sbjct: 3 ETFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI Sbjct: 63 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 121 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +++ ++E E K ++T +KR + LK A + D I S IT + + +V Sbjct: 122 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242 H +R A+LVG GTVL DDP+LTCRL + +P+R+ILD L K+ + Sbjct: 181 HEMRNIYSAVLVGAGTVLKDDPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A VI+ TE+++ K ++ +L L R + S+LVEGG+ V F Sbjct: 237 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 290 Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 ++ D + + S + G+G L + + F V ++ S+ +E C Sbjct: 291 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEMR---TC 345 Query: 361 LQE 363 +E Sbjct: 346 SRE 348 >gi|198273955|ref|ZP_03206487.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135] gi|198273033|gb|EDY97302.1| hypothetical protein BACPLE_00091 [Bacteroides plebeius DSM 17135] Length = 346 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 112/341 (32%), Positives = 176/341 (51%), Gaps = 18/341 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M ++ +R + + NP V +IV+DG +IG G G HAEV A+ Sbjct: 2 TIDEKYMRRCIQLARNGICHAAPNPMVGAVIVRDGKIIGEGYHVRCGEGHAEVNAIASVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E + AT YV+LEPCSHYG++PPCA II GI RVVV DP V+GRG+Q L Sbjct: 62 DESLLKDATIYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCVDPFSLVAGRGIQKLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFIS 179 GI + ++E E + + A++T ++KR +ITLK A S D I +V ++ +S Sbjct: 122 GIEVTVGVLEKECRELIRAFVTFNLKKRPYITLKWAQSADGFLDIRREDGNAVRLSTPLS 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH +RA+ AILVG T D+P LT R +P+R+++D L + Sbjct: 182 TLAVHKMRAEQKAILVGRRTAQLDNPSLTVR--EWYGQNPLRLVIDRQLTLPPHLHLFDG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAA 297 + P ++ TE + N+ + D L +++ +L + + +LLVEGG+ Sbjct: 240 S--TPTLVFTEKEKAATQ------NLTYVTLDFGQNILPQIMQVLYEQKIQTLLVEGGSQ 291 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF 338 +F+ L D + +++ + GIP+PL E F Sbjct: 292 TLQAFLEQGLWDEAFIEHARVTL-HDGIPAPLLPHGQESRF 331 >gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2148] gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2148] Length = 371 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 120/364 (32%), Positives = 184/364 (50%), Gaps = 22/364 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + + R M+ AL+ +R NP V C++ +DG VIG G T G HAEVQAL EA Sbjct: 3 TELNTRMMARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQALAEA 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A GATAYVTLEPCSH G++ PCA +I G+ RV ++DP+ V+G GL L G Sbjct: 63 G-DASGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E++ + + +++R R + K+A+S D MA S ITG ++ Sbjct: 122 IEVEVGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARAD 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSL 232 V LRA S A++ GIGTVL+DD LT R L + P+R++LD + + Sbjct: 182 VQRLRAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTPA 241 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVT 288 + I+ A AP +I + A ++ + + +L +L+ L R Sbjct: 242 SAAILDGA--APTLICHDEKLDAST-AIVASGVDRLALGGDENGLNLAQLIDYLSARQSN 298 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 +LVE G +A +F+ L+D +I+Y + +++G P PLE + Sbjct: 299 EILVECGPRLAGAFVREGLLDELIVYMAPVLMGSAARPLLDLPLEAMAQKIPLQIEDMRK 358 Query: 346 FGSD 349 G D Sbjct: 359 VGDD 362 >gi|282857766|ref|ZP_06266975.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens W5455] gi|282584436|gb|EFB89795.1| riboflavin biosynthesis protein RibD [Pyramidobacter piscolens W5455] Length = 364 Score = 309 bits (792), Expect = 4e-82, Method: Composition-based stats. Identities = 129/368 (35%), Positives = 180/368 (48%), Gaps = 17/368 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D M AL + +G T+ NP V C+IVKDG V+GRG + G HAE AL Sbjct: 1 MRQQWTDEHHMRQALDLALRGLGKTTPNPMVGCVIVKDGEVVGRGWHDHLGGLHAEAAAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG++ARGAT YVTLEPCSH GR PPCA +++ G+ R V V DP+ +VSGRGL+ LS Sbjct: 61 RDAGDKARGATVYVTLEPCSHQGRQPPCAPALVKSGVTRCVCAVGDPNPKVSGRGLKILS 120 Query: 121 QKGIIV-DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ ++E E + + Q +R +TLK A+S D + +A S ITG + Sbjct: 121 DAGVETVCGVLEKEASWLNRGFFSLQTRRRPWVTLKAALSLDGSMALADGTSRWITGEAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + + H LR ++DAIL+G GT+ DDP LT R ++ SP +IL D+ ++K Sbjct: 181 RAESHRLRGENDAILIGSGTLRHDDPALTVR--AVEGPSPRPVILCS------DAAVLKG 232 Query: 240 ALLA---PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 A I+ V + DLK L L G+ +LVE G Sbjct: 233 NYKALRRDAIVFVPEGTAVPPERSGRVYAVSSSAGRPDLKAALEKLAELGLARVLVEAGP 292 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353 + +FI + L D L+ + + GEG + L G D+ LE Sbjct: 293 TICSAFIAAGLADEYQLFVAPVFTGEGRKITGSIRLRRMDDAIPMTLRDVRTAGRDLWLE 352 Query: 354 YIGKNLCL 361 G N C Sbjct: 353 --GGNPCS 358 >gi|329898131|ref|ZP_08272333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC3088] gi|328920911|gb|EGG28343.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [gamma proteobacterium IMCC3088] Length = 361 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 174/360 (48%), Gaps = 19/360 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ + NP V C+IVKDG ++G G T G HAEV AL +AGE+ARGA Sbjct: 1 MQRAINLAEHGKYSAKPNPHVGCVIVKDGQIVGEGYTQPPGQGHAEVMALAQAGEQARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H GR+ PC+Q +I+ GI +VV ++DP V+G G + L GI + + Sbjct: 61 TAYVTLEPCNHQGRTGPCSQALIQAGISKVVAAIEDPYPEVAGSGFEALKHAGIEVRVGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + K L +L R + LK+A S D I +A S ITG ++ V LRA+ Sbjct: 121 LADTVKQQLQGFLLRLERGYGRVRLKLACSLDGKIALANGESQWITGPSARRDVQRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 + ++ G+GTVL DD +L R L H P+R + D + + +K++ Sbjct: 181 AGLVITGVGTVLEDDCQLNVREGDLPLDPNLAREATAHQPLRAVFDSTLRTTNGAKVLSG 240 Query: 240 ALLAPVIIVTEND--DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A + E P + + LL ++ +L+E G Sbjct: 241 ---ARTLFCAEPKTTRPDHINPENIVEVAALKTPAGLKNALLQLMAIAPANEILLECGPR 297 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +A S++N+ L+D +ILY++ +++G + + NF + G D+ L + Sbjct: 298 LAGSWLNAGLIDELILYQAPVILGHNAQSLVHMDIATMTQRLNFGLIDTRRIGPDLKLTF 357 >gi|298291639|ref|YP_003693578.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506] gi|296928150|gb|ADH88959.1| riboflavin biosynthesis protein RibD [Starkeya novella DSM 506] Length = 370 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 143/369 (38%), Positives = 212/369 (57%), Gaps = 18/369 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAE 56 M + D M+AAL R +G T NP+V L+V++ +V+GRG T+ GG PHAE Sbjct: 1 MTKTIHDEALMAAALSVGRRELGHTWPNPAVGALVVRETGGAPVVLGRGWTSKGGRPHAE 60 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 QAL +AGE ARGAT YVTLEPCSH+G +PPC + G+ RVV ++DPD RV+GRG Sbjct: 61 PQALAQAGEGARGATLYVTLEPCSHHGLTPPCVDAVRASGVARVVAAIEDPDFRVAGRGF 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L + GI + + E ++ ++ R E R H+ LK+AVS D +G+AG IT Sbjct: 121 SLLREAGIDVEVGVGAPEARLAHAGHIRRVTEGRPHVMLKLAVSADGKVGLAGRRPAAIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G +++ +VHL+R+ DA+L GIGTVLADDP LTCRL G+++ SP+RI+LD +L S Sbjct: 181 GEVARGRVHLMRSIYDAVLTGIGTVLADDPLLTCRLPGMEDRSPLRIVLDADLRLPSTSA 240 Query: 236 IIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCR-----DLKKLLTILVGRGVTS 289 + ++ AP+ I+ D PV + ++ R DL + L +L RG+T Sbjct: 241 LARSLGTAPLWIIAAEDAPVAPEEMLVAMGVEVMRVRRRPDGGIDLNEALKLLALRGITR 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 L+VE G V+ + + LVD ++ + + +GEG + + + D + SD Sbjct: 301 LMVEAGPRVSTAVLREGLVDEANIFLAPVQLGEGALDAL-------EGLPLSALDDYLSD 353 Query: 350 VCLEYIGKN 358 LE+ G++ Sbjct: 354 AELEWHGED 362 >gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia rhizoxinica HKI 454] gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [Burkholderia rhizoxinica HKI 454] Length = 382 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 179/363 (49%), Gaps = 16/363 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S FD M AL + + TS NP V C++VKDG VIG G T G HAE+ AL++ Sbjct: 2 FSDFDRLQMQRALVLAERGLYTTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G GATAYVTLEPCSH+GR+PPCA +IE GI RV+ ++DP+ +VSGRGL L Sbjct: 62 ARLRGHTPAGATAYVTLEPCSHFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASL 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + ++ E + +++R + LKIA + D + S IT Sbjct: 122 RDAGVDVRCGLLAHEAQELNVGFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ A L GIGTV DDP++T R P+R+++D + LD++I+ Sbjct: 182 ARTDGHAWRARACATLTGIGTVREDDPQMTVR-AVSTPRQPLRVLVDSCLDVPLDARILT 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEG 294 A + + A A R +I DL L +L RG+ L VE Sbjct: 241 GAPPLVICARDDAAFAARAHALRAAGAEVIALPNQSGKVDLPAALRLLAARGINELHVEA 300 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSD 349 G + S + VD ++LY + ++G P P + + + + R G D Sbjct: 301 GYKLNGSLLREGCVDELLLYIAPALLGNATGMFNLEPPPTLDQRVRLQYHSIER--IGED 358 Query: 350 VCL 352 + + Sbjct: 359 LRV 361 >gi|160888034|ref|ZP_02069037.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492] gi|317478584|ref|ZP_07937741.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36] gi|156862533|gb|EDO55964.1| hypothetical protein BACUNI_00442 [Bacteroides uniformis ATCC 8492] gi|316905225|gb|EFV27022.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 4_1_36] Length = 351 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 112/336 (33%), Positives = 173/336 (51%), Gaps = 23/336 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60 Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120 Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGF 177 G ++ ++E+E + + ++T +R +ITLK A S D I V ++ Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH RA+ AILVG T D+P L R SP+RI+LD KLS + Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPCLNVR--HWYGRSPVRIVLDRQQKLSPSLHLF 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292 + P ++ TE L N+ Y D L +L+ L RG+ SLLV Sbjct: 239 DGS--VPTLVFTEAPHAPLP--------NVEYLPVSDYRRNILPELMETLYTRGLQSLLV 288 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 EGG+ SFI++ L D I + + ++ G+ +P Sbjct: 289 EGGSQTLQSFIDAGLWDEIFVEEAPHLL-HSGVKAP 323 >gi|124023623|ref|YP_001017930.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9303] gi|123963909|gb|ABM78665.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Prochlorococcus marinus str. MIT 9303] Length = 368 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 175/358 (48%), Gaps = 10/358 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL+ + G TS NP V +++ K G ++G G A G PHAEV AL +AGE+A Sbjct: 14 WMRRALQLAALADGRTSPNPLVGAVVLDKAGKLVGEGFHACAGEPHAEVGALAQAGEQAS 73 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G T VTLEPC H GR+PPC Q +I G+RRVVV + DPD RV+G G+ L G+ ++ Sbjct: 74 GGTLVVTLEPCCHQGRTPPCTQAVIAAGLRRVVVAMQDPDPRVAGAGITRLRDAGLEVIT 133 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E A++ R R LK A+S D + S I+G +++ VH LR Sbjct: 134 AVLEPEAAHQNRAFVHRVSTGRPWGILKWAMSLDGRTALPNGASQWISGGEARSWVHRLR 193 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 Q DA++VG GTV ADDP LT R G + P R++L L +++ A+ ++ Sbjct: 194 GQCDAVIVGGGTVRADDPLLTSR--GHSDPEPKRVVLSRSLDLPQQAQLWDIAVAH-TLV 250 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + LA + ++ + +LL L + +L E G A+A + + Sbjct: 251 AHGLEPGHEQLAHLPEGPELLALPASEPLELLQALAQQDCNRVLWECGPALAAAALQQGC 310 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYIGKNLC 360 V + + + ++G +P ++ V G+D L+Y C Sbjct: 311 VQELAVVVAPKLLGGLPARTPFDDLGFTSMKEVVGLASGSLQQLGADWLLQYELSKHC 368 >gi|84515381|ref|ZP_01002743.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis SKA53] gi|84510664|gb|EAQ07119.1| riboflavin biosynthesis protein RibD [Loktanella vestfoldensis SKA53] Length = 359 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 130/357 (36%), Positives = 191/357 (53%), Gaps = 8/357 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL+ R +G NP+V C+IV G ++GRG T GG PHAE AL +AG + Sbjct: 3 DARYMALALQLGRRGMGRVWPNPAVGCVIVNHGRIVGRGWTQDGGRPHAETVALAQAGPD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT YVTLEPC+H+G++PPCA +I G+ RVVV + DPD RV+GRG+ L Q GI + Sbjct: 63 ACGATVYVTLEPCAHHGQTPPCAAALIAAGVARVVVALGDPDARVAGRGIALLEQAGIAV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ + + +L+R R +TLK+A + D I A S ITG ++ VH+ Sbjct: 123 ETGLLADQARADHAGFLSRITAARPFVTLKLAGTLDGRIATASGESQWITGTEARRAVHM 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA+LVG GTV ADDP L+ R G+ P+RI++ KL L S++ +TA +PV Sbjct: 183 MRARHDAVLVGAGTVRADDPALSVRGLGIP-RQPVRIVVSRAVKLPLTSQLAQTARQSPV 241 Query: 246 IIVTENDDPVLALAFRKK--NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 I + V + + + ++ L G+T + EGG +A S + Sbjct: 242 WICHGAEADVADWLALGAVSLPCAVRAGQVEPEAMMQALASAGITRVFCEGGGMLAASLL 301 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356 + LVD +++ + IG G P+ G F G DV + Sbjct: 302 GAGLVDDLVVMTAGCAIGAEGTPALAAMGIGRLADAPRFALHDLARLGDDVMTHWRR 358 >gi|254441291|ref|ZP_05054784.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 307] gi|198251369|gb|EDY75684.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 307] Length = 370 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 128/362 (35%), Positives = 190/362 (52%), Gaps = 19/362 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ G + Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPNENGGRVIGRGWTADGGRPHAETRALD--GID 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GAT+YVTLEPC+H+G++PPC +I + RVV+ DPD RV+G+G+ L GI + Sbjct: 59 ADGATSYVTLEPCAHHGKTPPCVDALIGANVGRVVIATGDPDPRVAGKGVAMLRAAGIDV 118 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E E + + +L R E R +TLK+A S D I A S ITG ++ +VH Sbjct: 119 ITGVREHEAREDMAGFLLRVTENRPFVTLKLASSFDGRIATATGQSKWITGPDARRKVHA 178 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+LVG GTV ADDP LT R G P+R++ + + ++ T AP+ Sbjct: 179 MRAGHDAVLVGAGTVRADDPTLTVRNTGA-VRQPVRVVASRRLDIGA-ANLLATLGDAPL 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + V A + + CD + D ++ L G+T + EGG ++A S Sbjct: 237 WLCHGAN--VDAQKWADLGAKTLACDLQGRQIDPVDMMHKLAASGLTRVFCEGGGSLAAS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + + LVD I+ + + I +G G PS L+ F + G+D+ + Sbjct: 295 LLGAGLVDEIVGFTAGIALGAEGTPSIGALGLDVLDDAPRFDLIETTQVGADIMHRWHRA 354 Query: 358 NL 359 +L Sbjct: 355 SL 356 >gi|299147398|ref|ZP_07040463.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23] gi|298514676|gb|EFI38560.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_23] Length = 351 Score = 308 bits (790), Expect = 7e-82, Method: Composition-based stats. Identities = 109/357 (30%), Positives = 172/357 (48%), Gaps = 23/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVTGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182 + ++E E + + ++T R +ITLK A S D I + ++ ++ Sbjct: 130 VTVGILEKECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ TE P NI I D L++++ +L R + SLLVEGG+ + Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNTLEQIMEVLYQRKIQSLLVEGGSQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI+ L D + + + G+ +P + + Y+ + Sbjct: 300 SFIDDELWDEAYIEKCPNRL-HSGVKAPQMDDKFSYSIEEHFERQI-----WHYVRR 350 >gi|228475866|ref|ZP_04060576.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119] gi|314936136|ref|ZP_07843483.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp. hominis C80] gi|228270021|gb|EEK11491.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis SK119] gi|313654755|gb|EFS18500.1| riboflavin biosynthesis protein RibD [Staphylococcus hominis subsp. hominis C80] Length = 347 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 173/354 (48%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A ++A+ Sbjct: 3 EFMKYAIQLAQMVEGQTGVNPPVGSVVVKDGRIVGLGAHLKQGEKHAEVQALDMAQDKAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T Y++LEPC+HYG +PPC IIE G+ +V+ V D +S G L + GI V+ Sbjct: 63 GGTIYISLEPCTHYGSTPPCVNKIIEHGLSKVIYAV--KDTTLSSEGDIILEKAGIEVEY 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 E + + K IT+K++ S D S IT K V+ LR Sbjct: 121 QYSEEAFALYEDFFKAKQHKIPEITVKVSTSLDGKQATDSGQSQWITNKAVKQDVYRLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+L G GT+ AD+P+ T R+ + P+RIIL ++ +I L+ + I Sbjct: 181 THDAVLTGNGTIEADNPQYTTRIQ--EGKHPIRIILSKRGQIDYSKQIFHD-QLSEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L +I IIY + +LK +L+ + RGV LLVE G + F+ S + Sbjct: 238 TENHE----LKSPSHHIKIIYLETCNLKSILSDIYQRGVGRLLVEAGPQITSEFLQSNYL 293 Query: 309 DSIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D +I+Y + +IG G + + F + + ++ + K Sbjct: 294 DHLIIYYAPKIIGGIGKNQFYQTDNVIDLADAPQFEVISTESIQQNIKMTLRKK 347 >gi|212223758|ref|YP_002306994.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1] gi|212008715|gb|ACJ16097.1| riboflavin biosynthesis protein RibD [Thermococcus onnurineus NA1] Length = 361 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 121/370 (32%), Positives = 187/370 (50%), Gaps = 22/370 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +FM AL ++ G + NP V +IVKDG VIG G G HAE+ A+E+ Sbjct: 1 MMDEDKKFMHLALELAKRGEGWVNPNPMVGAVIVKDGEVIGVGWHRKFGEKHAEINAIED 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGAT YVTLEPCSH+G+ PPCA II G +RVVV + DP V+GRG++ + Sbjct: 61 AKDRGHDTRGATLYVTLEPCSHWGKQPPCADRIIAEGFKRVVVAMKDPHSLVAGRGIEKM 120 Query: 120 SQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI VD ++E E K ++ K +++K+A++ D I S ITG Sbjct: 121 QRAGIEVDVGILEEEAKKLNEIFIKYITTKIPFVSIKLALTLDGFIATESFSSQWITGDK 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS---K 235 ++ +V LR + AI+VG GT+L D+P+L CRL ++ILD H + + + Sbjct: 181 ARQKVQELRRRHMAIMVGAGTILRDNPKLNCRLPECPPK--YKVILDRHGLIGEELSGGR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + VII TEN + AF + N I+ + D +++L L G+ S+L+EGG Sbjct: 239 RFRLFNDGNVIIFTENPE-----AFGEVNATIV--EETDPERILRKLGEMGIDSVLIEGG 291 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A F++ D ++ + G G P ++E + G + + Sbjct: 292 -RIACQFLS--YADKFYIFYGPKLFGRGIKPFECLSVKEANEAPVLEIESIEKLGESLLV 348 Query: 353 EYIGKNLCLQ 362 + +Q Sbjct: 349 TAYPGDCGVQ 358 >gi|89073130|ref|ZP_01159669.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium sp. SKA34] gi|89051083|gb|EAR56540.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium sp. SKA34] Length = 374 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 115/368 (31%), Positives = 183/368 (49%), Gaps = 20/368 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++ Sbjct: 2 FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIAIGDEILGEGFHYRAGEPHAEVFALKQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ GI RV+ + DP+ V+GRG++ L + Sbjct: 62 AGTRAKGATAYVTLEPCSHYGRTPPCAEALIKSGISRVICAMVDPNPLVAGRGVEMLQKA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +++ E + A++ + K ++ LK+A S D +A S ITG ++ Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----------QEHSPMRIILDPHFKL 230 V RAQ+ AIL TV+ADDP L R + L P+R+I+D +L Sbjct: 182 DVQRHRAQAGAILSTSATVIADDPSLNVRWSELGTLIQDEYAQADVRQPIRVIIDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288 + ++ L I+ + I + + DL L+ L G+ Sbjct: 242 TPAYQVFH--LPGKTILARTMSGNEDWPDSVSQWIIPTRENNQQLDLTLLMRKLAENGIN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 + VE GA +A + ++LVD +ILY++ ++G SPL + Sbjct: 300 HIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMNQTIDLNITDIR 359 Query: 345 YFGSDVCL 352 DV + Sbjct: 360 MVDCDVKI 367 >gi|223043509|ref|ZP_03613554.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14] gi|222442997|gb|EEE49097.1| riboflavin biosynthesis protein RibD [Staphylococcus capitis SK14] Length = 349 Score = 308 bits (789), Expect = 8e-82, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 175/354 (49%), Gaps = 12/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE+A+ Sbjct: 3 RFMNYAIQLAKMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGEDAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+ Sbjct: 63 DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + +T+K++ S D S IT K V+ LR Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G T+ ADDP T R+ P+R+IL ++ + ++ +P+ I Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQ--DGKHPIRVILSKSGQIDFEQQLF-ADTASPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN++ L K+I II + D +L L RG+ LLVE G V F+ S + Sbjct: 238 TENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D +ILY + +IG G + + F V ++ L+ K Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNIKLKLRKK 349 >gi|160885546|ref|ZP_02066549.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483] gi|156109168|gb|EDO10913.1| hypothetical protein BACOVA_03546 [Bacteroides ovatus ATCC 8483] Length = 351 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 169/346 (48%), Gaps = 18/346 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M + ++ + NP+V +IV +G +IG G G HAEV A+ +E Sbjct: 10 EKYMRRCIELAKNGLCNVPPNPTVGAVIVCNGRIIGEGYHIRCGEAHAEVNAIRSVKDES 69 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP V+GRG+Q L G Sbjct: 70 LLKHSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSEVAGRGIQKLRDAGRE 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182 + ++E E + + ++T R +ITLK A S D I + ++ ++ Sbjct: 130 VTVGILEEECQSLIRRFITFNTLHRPYITLKWAESADRFIDIERTSGMPLILSSPLTSML 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA++DAI+VG T L D+P LT R H+P+R++LD L D +I Sbjct: 190 VHKKRAEADAIMVGRRTALLDNPSLTVR--NWYGHNPIRVVLDRTLSLPNDLQIFDGN-- 245 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P ++ TE P NI I D L++++ +L R + SLLVEGG+ + Sbjct: 246 VPTLVFTEKKQPART------NITYISIDFNHNPLEQIMEVLYQRKIQSLLVEGGSQLLQ 299 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 SFIN L D + + + G+ +P + F Sbjct: 300 SFINDELWDEAYIEKCPSRL-HSGVQAPQMNDNFSYSIEEHFERQF 344 >gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 349 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 102/356 (28%), Positives = 175/356 (49%), Gaps = 20/356 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D + M AL+ + +NP V C+IVK +I +G G H E+ AL+ Sbjct: 4 TFSKNDTQNMVIALKLASQGKYGVKSNPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQ 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + +A+GAT YVTLEPCSH G++P CAQ II G+++V++ + DP+ V+G+G+ L Sbjct: 64 QINHQAQGATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLEN 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E++ ++ + + KIA+S D M+ S IT +++ Sbjct: 124 AGIEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTR 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKT 239 V LRA AI+ G GT++ D+P +T RL+ + +P+R+++D +++ S I Sbjct: 184 LDVQKLRANHQAIMTGSGTIINDNPLMTVRLDNINL-TPLRVVIDSKNQITNTSLNIFNA 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP +I N + DL +LT L +G+ ++L+E G + Sbjct: 243 D--APTLI------------LNPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPKLI 288 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352 S I S L+D I+Y + I++G ++ + V +D+ + Sbjct: 289 GSMIKSNLIDEFIIYMAPILMGSNANSMLNLVIKNMAHKIKLNIVDVRMVSNDIKI 344 >gi|89055912|ref|YP_511363.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Jannaschia sp. CCS1] gi|88865461|gb|ABD56338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Jannaschia sp. CCS1] Length = 365 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 134/356 (37%), Positives = 187/356 (52%), Gaps = 12/356 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DAR+M+ AL +G NP+V C++V++G V+GRG TA GG PHAEV AL +AG Sbjct: 3 DARWMALALSLGARGMGQVWPNPAVGCVLVREGRVVGRGWTARGGRPHAEVVALGQAGAL 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGA AYV+LEPC+H G++ PCA +I+ G+ RVVV +DPD RV+G G+ L G+ V Sbjct: 63 ARGACAYVSLEPCNHVGQTGPCASALIDAGVARVVVACEDPDPRVAGGGIARLRAAGVEV 122 Query: 127 DRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + H + R E R +TLK+A S D I A S ITG ++ +VH Sbjct: 123 VVGVGAAEAERAHTGFFRRVREGRPMLTLKVATSLDGRIATASGESQWITGPDARRRVHG 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA+ DA+LVG GT ADDP LT R G P+R+++ + +D + +TA PV Sbjct: 183 MRARHDAVLVGAGTARADDPSLTVRGFG-DVPQPVRVVVSRRLDVPVDLALGRTARDVPV 241 Query: 246 IIVTENDDPVLALAFRKKNINII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +V D P A A + D+ L L G+T + EGG A+A Sbjct: 242 WLVHGPDVPSAARAAWVAAGATLIESALGAGGQLDVGAALQRLGEAGLTRVFCEGGGALA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVC 351 S + + LVD + ++ +VIG G PS L F R + G D Sbjct: 302 ASLLTADLVDELAVFSGGLVIGAEGTPSVGAMGLTGLAEAPRFTRERVEGVGPDAL 357 >gi|93007294|ref|YP_581731.1| riboflavin biosynthesis protein RibD [Psychrobacter cryohalolentis K5] gi|92394972|gb|ABE76247.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter cryohalolentis K5] Length = 370 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 188/366 (51%), Gaps = 33/366 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D FM A+ ++ + NP+V C+IV+ V+G+G G PHAEV AL+ Sbjct: 26 SQDAKDHYFMMLAIEQAKLGLYTARPNPAVGCVIVQAEEVVGQGFHPKAGQPHAEVFALK 85 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q Sbjct: 86 DAGIRTVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVKLLEQ 145 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + +++++ + +L + ++ LKIA S D MA S ITG ++ Sbjct: 146 AGIAVSVGVLKTQAEALNKGFLKAMRNQMPYVRLKIATSLDGRTAMATGESKWITGPAAR 205 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235 V LRAQS AI+ G TV+ D+P+L R N L + P +ILD +L D + Sbjct: 206 EDVQKLRAQSGAIITGSETVIVDNPQLNVRSNQLGIAIEEVPHPKVVILDRRGRLKHDLQ 265 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294 + + + +Y +L++LL +LV +L+E Sbjct: 266 ---------------------SDYQLCRRPDTLYWREDNLRELLKVLVTEYQCYDVLIEA 304 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 GA+VA SF+ +LVD +I+Y++ ++G+ PL + F + GSD+ Sbjct: 305 GASVAGSFLQQQLVDELIVYQAPCLLGQKARAMVDINPLSLAQ-QLRFDIQCHEQLGSDL 363 Query: 351 CLEYIG 356 L + Sbjct: 364 KLTLLP 369 >gi|163733978|ref|ZP_02141419.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och 149] gi|161392514|gb|EDQ16842.1| riboflavin biosynthesis protein ribD [Roseobacter litoralis Och 149] Length = 366 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 129/358 (36%), Positives = 188/358 (52%), Gaps = 11/358 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+M+ AL R +G NP+V C+IVK+ V+GRG T GG PHAE QAL +AG +AR Sbjct: 6 RYMALALSLGRRGLGRVWPNPAVGCVIVKEDRVVGRGWTQPGGRPHAETQALAQAGAQAR 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA YVTLEPC+H+G++PPCA +++ G+ RV DPD RV G G + L Q GI + Sbjct: 66 GADVYVTLEPCAHHGKTPPCAAALVKAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E++ + + R R +TLK+A S D I S ITG ++ VH LR Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGRQARRVVHALR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DA++VG GT DDP LT R G P R+++ + L + +TA PVI+ Sbjct: 186 ARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244 Query: 248 VTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 D DP L ++ ++ C + D ++ L G G+T + EGG+A+A S Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAAKGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + LVD +I + + + IG G+PS L + GSD+ + Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSNLSRAPRYGLRSTQRIGSDIMHIWER 362 >gi|110679096|ref|YP_682103.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh 114] gi|109455212|gb|ABG31417.1| riboflavin biosynthesis protein ribD [Roseobacter denitrificans OCh 114] Length = 365 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 131/358 (36%), Positives = 187/358 (52%), Gaps = 11/358 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+M+ AL R G NP+V C+IVKDG +IGRG T GG PHAE QAL +A +AR Sbjct: 6 RYMALALSLGRRGFGRVWPNPAVGCVIVKDGRIIGRGWTQPGGRPHAETQALAQAAAQAR 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA YVTLEPC+H+G++PPCA+ ++ G+ RV DPD RV G G + L Q GI + Sbjct: 66 GADVYVTLEPCAHHGKTPPCAEALVRAGVARVFAATGDPDPRVHGAGFRALEQAGIHVQS 125 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E++ + + R R +TLK+A S D I S ITG ++ VH LR Sbjct: 126 GILEAQARRDNAGFFARVELDRPFMTLKLAGSFDGRIATGTGESKWITGPQARRVVHALR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A+ DA++VG GT DDP LT R G P R+++ + L + +TA PVI+ Sbjct: 186 ARHDAVMVGAGTARKDDPALTVRDLG-TAWQPARVVISRRLDVPLMGVLARTATEVPVIL 244 Query: 248 VTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 D DP L ++ ++ C R D ++ L G G+T + EGG+A+A S Sbjct: 245 CHGKDADPQLIRTWQDLGAVLLPCAARGGQLDPADVMRQLAGHGLTRIFCEGGSALAASL 304 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + LVD +I + + + IG G+PS L + + G DV + Sbjct: 305 FEADLVDELIGFTAGLAIGAEGLPSIGALGLSKLSRAPRYDLRSTQTVGPDVMHIWER 362 >gi|218264485|ref|ZP_03478318.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii DSM 18315] gi|218221978|gb|EEC94628.1| hypothetical protein PRABACTJOHN_04018 [Parabacteroides johnsonii DSM 18315] Length = 354 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 178/336 (52%), Gaps = 20/336 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M+ + +R G T+ NP V +IV G +IG G G HAEV A+ +EA Sbjct: 12 EKYMARCIELARGGEGNTAPNPMVGAVIVHKGKIIGEGFHRKCGEAHAEVNAVASVRDEA 71 Query: 68 --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 R +T YV+LEPCSHYG++PPCA+ II+ GI RVVV DP VSGRG++ L + G+ Sbjct: 72 LLRDSTIYVSLEPCSHYGKTPPCAELIIKKGIPRVVVGTLDPFPEVSGRGVRMLREAGVE 131 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISK 180 +V ++E E + A++T Q+ KR ++ LK A S D + + + ++ + Sbjct: 132 VVTGVLEEEARTLNPAFMTFQIRKRPYVYLKWAQSADGFMDVRREDATESPVLLSSAETL 191 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH LR++ AI+VG T L D+P LT R SP+R++LD KL S ++ Sbjct: 192 RRVHRLRSEVAAIMVGTRTALLDNPSLTVR--HWAGQSPVRVVLDRTLKLPAGSHLLD-- 247 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAV 298 + ++ T + N+ + D L ++L L + + SL+VEGGA + Sbjct: 248 GMVRTLVFTAAEVESRP------NVEYVRIDFEQEVLPQVLQYLYEQNLNSLMVEGGAGL 301 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 SF+++ L D + + V+G G+ +P G L Sbjct: 302 LESFLDAGLWDEAWVETAPAVLGA-GVKAPAVPGVL 336 >gi|163793213|ref|ZP_02187189.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199] gi|159181859|gb|EDP66371.1| hypothetical protein BAL199_25529 [alpha proteobacterium BAL199] Length = 369 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 146/368 (39%), Positives = 204/368 (55%), Gaps = 11/368 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D R+M+ ALR + VG T+ NP V C++V+DG ++GRG T GG PHAE AL Sbjct: 1 MADEADDDRWMALALRLAHSAVGDTAENPPVGCVLVRDGRIVGRGRTGSGGRPHAEAVAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG ARGATA+VTLEPC+H+GR+PPCA ++ G+ RVV + DPD RV G G L Sbjct: 61 AQAGNAARGATAFVTLEPCAHHGRTPPCADALVAAGVVRVVAAIGDPDPRVDGGGFATLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ + + + +L+R + R +TLKIA S D I A S ITG + Sbjct: 121 RAGVSVSVGVAAQQAATATTGFLSRVQDARPFVTLKIATSLDGRIATASGASRWITGTAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H++RA+ DAILVGIGT LADDP LTCR GL+E SP+R++LD +L +DS + +T Sbjct: 181 RRHAHVVRARQDAILVGIGTALADDPALTCRTPGLEERSPVRVVLDSGLRLPVDSDLART 240 Query: 240 ALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVE 293 A P ++T A A + + D+ +L L GRG+ +LVE Sbjct: 241 ARWVPTWVITSVGAGSGHARALTDLGVEVFGVARDAGGRPDVPAVLATLAGRGIGRVLVE 300 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSD 349 GGA VA SF+ + VD I YR+ I+IG G P+ + F +D Sbjct: 301 GGATVARSFVAADAVDEIQWYRAPILIGGDGRPAVDALDVATPDGAPRFDRTDCISLDAD 360 Query: 350 VCLEYIGK 357 + Y + Sbjct: 361 MLETYRRR 368 >gi|291279486|ref|YP_003496321.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter desulfuricans SSM1] gi|290754188|dbj|BAI80565.1| bifunctional riboflavin biosynthesis protein RibD [Deferribacter desulfuricans SSM1] Length = 384 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 110/358 (30%), Positives = 180/358 (50%), Gaps = 11/358 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M ++ + G T TNP V +IVKDG +IGRG G HAE+ A+ +A E GA Sbjct: 8 MKECVQLALLGKGYTKTNPIVGAIIVKDGKIIGRGYHEEYGKSHAEINAMNDAVEPLEGA 67 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPCS +G++PPC IIE I+RV + V DP+ +++G+G+ L + G+ V Sbjct: 68 DLYVTLEPCSIHGKTPPCVDAIIENKIKRVFIGVVDPNPKIAGQGIIKLIEAGVEVFVGF 127 Query: 131 ESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + + + + TLK+A S D I S IT S+ VH +R+ Sbjct: 128 DEELCASIIEDFTKGVLNQEPYYTLKLAQSLDGKIATKTGDSKWITSESSRVYVHYIRSV 187 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 SDAILVG+ TV D+P L RL E +P +++LDP F++ +S + K ++ V Sbjct: 188 SDAILVGVNTVNRDNPRLDVRL-IKAEVNPYKVVLDPFFEIDTNSFLCKNYSNKLILFVK 246 Query: 250 ENDDPVLALAFRKKNINIIY----CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + + I+ + DL + L + + ++L+EGG+ A FI++ Sbjct: 247 DIKSKEKYDKLISEGVEIVKDESIGELFDLNFISKYLYSKNILNVLIEGGSETAGRFIDA 306 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 VD ++ + + +IG S ++ +EK +F +D+ + K+ Sbjct: 307 GKVDKVLFFIAPKIIGGRDAVSSIKGDGVEKIQDAIEVKMAEVKHFDNDILISGKIKD 364 >gi|71066695|ref|YP_265422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter arcticus 273-4] gi|71039680|gb|AAZ19988.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Psychrobacter arcticus 273-4] Length = 351 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 190/366 (51%), Gaps = 33/366 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D FM A+ ++ + T NP+V C+IV+ V+G+G G PHAEV AL+ Sbjct: 7 SQDAKDRYFMMLAIEQAKLGLYSTRPNPAVGCVIVQAEEVVGQGFHPKVGQPHAEVFALK 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG A GATAYVTLEPCSH GR+PPCA+ +IE G+ RVVV DP+ +V+GRG++ L Q Sbjct: 67 DAGIRAVGATAYVTLEPCSHTGRTPPCAKALIESGVIRVVVAGLDPNPQVAGRGVRLLEQ 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++ ++ ++ +L + ++ LKIA S D MA S ITG ++ Sbjct: 127 AGIEVTVGILTAQAEVLNKGFLKAMRTQMPYVRLKIATSLDGRTAMATGESKWITGPAAR 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL-----QEHSPMRIILDPHFKLSLDSK 235 V LRAQS AI+ G TV+ D+P+L R + L Q P +ILD +L + + Sbjct: 187 EDVQKLRAQSGAIITGSETVIVDNPQLNVRSSQLGIAPEQVPHPKVVILDRRERLQYNLQ 246 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEG 294 + + +I+Y +L +LL +L +L+E Sbjct: 247 ---------------------SDYQLCRRTDILYWRDDNLTELLKVLVSEYQCYDVLIEA 285 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDV 350 GA+VA SF+ +LVD +I+Y++ ++G+ PL + F R + GSD+ Sbjct: 286 GASVAGSFLQQQLVDELIVYQAPCLLGQQARSMVDINPLSLAQ-QLRFDIKRYEQLGSDM 344 Query: 351 CLEYIG 356 L + Sbjct: 345 KLTLMP 350 >gi|167626935|ref|YP_001677435.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596936|gb|ABZ86934.1| pyrimidine reductase/pyrimidine deaminase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 356 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 109/361 (30%), Positives = 171/361 (47%), Gaps = 14/361 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + + +M AL + S NP V C+IVK+G +I G G HAE+ AL++ Sbjct: 1 MKNIENYYMQQALTLANRGRLSVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEIYALKK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATAYVTLEPC H+GR+PPC +I GI++VVV DP+ V+G+G+Q L Sbjct: 61 AGDKAKGATAYVTLEPCCHHGRTPPCTDALIRAGIQKVVVATLDPNPLVAGKGIQKLKDA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + +++ + + + Q ++ + K A+S D I + G S I+ + Sbjct: 121 GIEVKVGILQKQAQEQNKIFFHYQKTQKPFVYAKWAMSLDGKIAVNGNDSKKISSKEAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+ ++ P+R I+ + S + Sbjct: 181 DTHQLRNICDAILIGKQTLIDDNPGLDVRIQLSKKKHPVRFIISNNLSEVDKSWKVLDQN 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISTQVANELDNIGIEYWLLPTFKGQVCLDSLLNKMGQTGITSLLVEGGKK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +FIN +L++ Y S +VI ++ + + G D+ + K Sbjct: 301 TLENFINQKLINEFATYLSPVVIAGCN---------PKEKLIFQDVSFLGEDLLINSYFK 351 Query: 358 N 358 Sbjct: 352 E 352 >gi|213018626|ref|ZP_03334434.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995577|gb|EEB56217.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 399 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 132/392 (33%), Positives = 187/392 (47%), Gaps = 48/392 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 MS AL+ + +G + NP+V C+IVK+G+VIG G T GG PHAEV AL+ A + A Sbjct: 1 MSIALKLAEKSLGSVAPNPAVGCIIVKNGMVIGEGYTGIGGRPHAEVVALQNAKDLTHSA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPC H+G + PC II+ GI+RVV+ DPD RVSG G++ L + GI + + Sbjct: 61 TMYVTLEPCCHFGVTEPCTAEIIKSGIKRVVIAAIDPDSRVSGGGIKALKEAGIEVEQGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M+ E ++ + T + R I KIA + D I S IT ++N VH LRA+ Sbjct: 121 MQKEAEVLNVGFFTTKEFHRPFIACKIATTLDGKIATFTGDSKWITSEDTRNWVHELRAK 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL------- 242 DAI++G T++ DDP LTCRL GL++ SP+R+I+D KL + I KTA Sbjct: 181 YDAIMIGSSTLINDDPLLTCRLPGLEDRSPIRLIIDSQGKLKEEHNIAKTADTLYNHDLS 240 Query: 243 -----------------------------------APVIIVTENDDPVLALAFRKKNINI 267 ++T N +N Sbjct: 241 KEPTAYLSMSFQRVTLESRKKEEEWIPVSRTGMTGGSTWVITNNKVKKKIKNINYLVVNS 300 Query: 268 IYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 LK + + L G+T LLVEGG + + L+D +I+ RS ++G P Sbjct: 301 NNAGKVCLKDMASKLVSEIGITRLLVEGGGILITELLKHNLIDRLIICRSGKILGNDATP 360 Query: 327 SPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 + G N F V+ F DV + Sbjct: 361 FIGDLGIQSINNCHKFKKVKIIEFSEDVVEVW 392 >gi|124010107|ref|ZP_01694767.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC 23134] gi|123983875|gb|EAY24280.1| riboflavin biosynthesis protein RibD [Microscilla marina ATCC 23134] Length = 355 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 171/354 (48%), Gaps = 20/354 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM AL + G S NP V C+IV +IG G + G HAEV A+ + Sbjct: 14 DEKFMQRALDLAVLGAGKVSPNPMVGCVIVHQEQIIGEGWHQFYGKAHAEVNAVNAVENK 73 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A AT YVTLEPC+H G++PPCA +I+ ++RVVVC DP V G+GL+ L GI Sbjct: 74 ALLSEATVYVTLEPCAHQGKTPPCADLLIKHQVKRVVVCNQDPHPLVGGKGLEKLRTAGI 133 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E++GK + T +++R ++ K A + D I S I+ +S+ V Sbjct: 134 EVTVGILEAQGKEVNKRFFTGLLKQRPYVIFKWAETADGFIARKNYESKWISNKMSRMLV 193 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R + D+I+VG T D+P+L RL + +P R+++D KL + + L Sbjct: 194 HKWRTEEDSIMVGSNTARYDNPQLNARL--WKGRNPARVVIDRRLKLPSNLHLYNQQQLT 251 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + N+ + D L+++L L + + S++VEGG+ + + Sbjct: 252 FIY--------NQLSRSQASNLEFVKLDEDKFLEEVLLDLYEKKIRSVIVEGGSTLINLL 303 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 I + D +++S + GI +P G+L V + D EY Sbjct: 304 IEQNMWDEARVFKSTQTVFHEGIKAPKVHGHL------VNTERIMDDFYYEYRP 351 >gi|315503254|ref|YP_004082141.1| riboflavin biosynthesis protein ribd [Micromonospora sp. L5] gi|315409873|gb|ADU07990.1| riboflavin biosynthesis protein RibD [Micromonospora sp. L5] Length = 353 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A Sbjct: 1 MASVSVDEA-MRRAIELAARGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG ARG TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ V+ G L Sbjct: 60 LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNP-VASGGAATL 118 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + + E + A+LT ++ K A + D A S+ IT Sbjct: 119 RAAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LR DA+L G+GTVL DDP LT R + P+R+++D + D++ Sbjct: 179 ARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADAR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + A A I T + DL LL L RGV + L+EGG Sbjct: 239 VRDGA--ARTWIAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 +A +F+ + LVD I+ Y + ++G G P+ L + + + G D+ Sbjct: 285 PTLAGAFLAAGLVDRIVGYVAPKLLGAG--PTALLDAGVSTIADAIDLEITDVTRVGPDL 342 Query: 351 CLEYIGK 357 + + + Sbjct: 343 RITALPR 349 >gi|325292542|ref|YP_004278406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Agrobacterium sp. H13-3] gi|325060395|gb|ADY64086.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-5-phosphoribosylamino uracil reductase [Agrobacterium sp. H13-3] Length = 413 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 172/412 (41%), Positives = 232/412 (56%), Gaps = 55/412 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +FM+ A+ S H G T TNPSV C++VKD +I VTA GG PHAE QAL Sbjct: 1 MTSRADDEKFMARAIEVSLRHQGQTETNPSVGCVLVKDRKIIAEAVTAIGGRPHAERQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E AGE ARGATAYVTLEPCSH+G++PPCA ++E G+ RVVV VDDPD RVSGRG L Sbjct: 61 EIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYSILR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI+V+ ++ +GK L YLTRQV+KR H+ LK+A+S D MIG G G V ITG + Sbjct: 121 EAGIVVETGLLREQGKRALAGYLTRQVKKRPHVILKLAISSDGMIGRQGEGQVAITGPQA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ VH LRA+ D ILVGI T +ADDPELT R+ GL++ SP+RI+LD F+L L SK++KT Sbjct: 181 RHAVHELRARCDCILVGIRTAIADDPELTVRIAGLEDRSPVRIVLDRKFELPLTSKLVKT 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL------------------------ 275 A PV++ + ++ + I+ DL Sbjct: 241 ARDLPVVVAALPPSALPGISPSRGEIDSPRPTRSDLVSVTHSPTFGVGKNAALSISPREG 300 Query: 276 ---------------------KKLLTILVGRGVTSLL---------VEGGAAVAHSFINS 305 ++L + +L VEGGA A SF+ + Sbjct: 301 EVPGRAEGGSHDRRQPLIDAGVEILEAPTLENLLHILAERGMSELLVEGGAFAAKSFLEA 360 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 LVD I+L+ S +V+GEGGI +PL + +++ V +G D C +Y Sbjct: 361 DLVDRIMLFESPVVVGEGGIETPLSRADIPGDYVLVSETAYGPDRCFDYERP 412 >gi|325478589|gb|EGC81701.1| riboflavin biosynthesis protein RibD [Anaerococcus prevotii ACS-065-V-Col13] Length = 357 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 164/353 (46%), Gaps = 20/353 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M + G TNP V ++ KDG +I RG HAE+ E A GA Sbjct: 7 MRECFDLALKGSGKVLTNPMVGAVLYKDGKIIARGYHKSYYDDHAEIDCFNNLNESAEGA 66 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T V LEPCSH+G+ PPC +I ++RVV+ D + +V G+ L + GI ++ + Sbjct: 67 TLVVNLEPCSHFGKHPPCVDEVIRRKVKRVVISNTDTNPKV--DGISKLKEAGIEVITGV 124 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E EG+ + R + LK A S D I S I+ S+ VH LR+ Sbjct: 125 LEEEGEKLNEKFFFNMKYNRPLVALKYAQSLDGKIATENFDSKWISNEESRLFVHKLRSD 184 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG T+ D+P LT R+ P R+I+ KL L ++ K II T Sbjct: 185 YDAIIVGRNTLETDNPRLTSRIT--NGVDPFRVIVTSKAKLDLGYEVFKENSDNKTIIAT 242 Query: 250 END----DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + V L + KN ++ DL LL + + S+LVEGG+ + +SF+ + Sbjct: 243 NSKIDLGEGVKVLTLKDKNGSV------DLNDLLDRIYELNIGSVLVEGGSVLNNSFLEA 296 Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353 LVD I + + IV+ G+ + + +G K F FGSDV E Sbjct: 297 DLVDKIYQFMAPIVVSGKNSRSAFVGKGAKLIKDAKRFRIDEIKRFGSDVMFE 349 >gi|89255521|ref|YP_512882.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica LVS] gi|115314040|ref|YP_762763.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Francisella tularensis subsp. holarctica OSU18] gi|156501455|ref|YP_001427520.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|167010294|ref|ZP_02275225.1| riboflavin biosynthesis protein RibD [Francisella tularensis subsp. holarctica FSC200] gi|254366949|ref|ZP_04982986.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica 257] gi|254368485|ref|ZP_04984502.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp. holarctica FSC022] gi|290954250|ref|ZP_06558871.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica URFT1] gi|295312314|ref|ZP_06803101.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica URFT1] gi|89143352|emb|CAJ78519.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica LVS] gi|115128939|gb|ABI82126.1| bifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/ diaminohydroxyphosphoribosylaminopyrimidine deaminase [Francisella tularensis subsp. holarctica OSU18] gi|134252776|gb|EBA51870.1| riboflavin biosynthesis protein ribD [Francisella tularensis subsp. holarctica 257] gi|156252058|gb|ABU60564.1| riboflavin biosynthesis protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121379|gb|EDO65580.1| hypothetical protein FTAG_01328 [Francisella tularensis subsp. holarctica FSC022] Length = 355 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 107/323 (33%), Positives = 160/323 (49%), Gaps = 5/323 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M AL + S NP V C+IVK+G +I G G HAEV AL + Sbjct: 1 MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHETVGEAHAEVHALTK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A ++A+GATAYVTLEPC H GR+PPC II+ GI++V++ DP+ +V+G+G++ L Sbjct: 61 AVDKAKGATAYVTLEPCCHCGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E + + + Q K+ + K A+S D I + S I+ + Sbjct: 121 GITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFV 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LR DAIL+G T++ D+P L R+N + R IL H + + Sbjct: 181 NTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHSTRFILANHLTTINHNWRVLDQR 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAA 297 A I V +A + I L LL + G+TSLLVEGG Sbjct: 241 HAKTIFVCSKISARVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNK 300 Query: 298 VAHSFINSRLVDSIILYRSQIVI 320 +SFIN +LV+ Y + ++I Sbjct: 301 TLNSFINQKLVNEFYTYLAPVII 323 >gi|90579822|ref|ZP_01235630.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum S14] gi|90438707|gb|EAS63890.1| Putative pyrimidine deaminase/pyrimidine reductase [Vibrio angustum S14] Length = 374 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 113/368 (30%), Positives = 181/368 (49%), Gaps = 20/368 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D R M A++ ++ T+ NP+V C+I ++G G G PHAEV AL++ Sbjct: 2 FTNLDTRLMLRAIQLAKRGCFTTAPNPNVGCVIANGDEILGEGFHYRAGEPHAEVFALKQ 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A+GATAYVTLEPCSHYGR+PPCA+ +I+ G+ RV+ + DP+ V+GRG++ L + Sbjct: 62 AGVRAKGATAYVTLEPCSHYGRTPPCAEALIKSGVSRVICAMVDPNPLVAGRGVEMLQKA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + +++ E + A++ + K ++ LK+A S D +A S ITG ++ Sbjct: 122 GVDVQVGLLKEEAQAINKAFIKQMTTKMPYVELKLASSLDGKTALANGESKWITGPYARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-----------NGLQEHSPMRIILDPHFKL 230 V RAQ+ AIL TV+ADDP L R P+R+I+D +L Sbjct: 182 DVQRHRAQAGAILSTSATVMADDPSLNVRWSELGTQIQDEYPQADVRQPIRVIIDSQNRL 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVT 288 + ++ L I+ + I + + DL L+ L G+ Sbjct: 242 TPAYQLFH--LPGETILARAEIGNEDWPDSVSQWIIPTRENSQQLDLTLLMRKLAENGIN 299 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRD 344 + VE GA +A + ++LVD +ILY++ ++G SPL + Sbjct: 300 HIWVEAGAGLAGGLLEAQLVDCLILYQAPKLMGADSRSLMNLSPLTAMDQVIDLNITDIR 359 Query: 345 YFGSDVCL 352 DV + Sbjct: 360 MVDCDVKI 367 >gi|218531424|ref|YP_002422240.1| riboflavin biosynthesis protein RibD [Methylobacterium chloromethanicum CM4] gi|218523727|gb|ACK84312.1| riboflavin biosynthesis protein RibD [Methylobacterium chloromethanicum CM4] Length = 376 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 138/363 (38%), Positives = 193/363 (53%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A + I + DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +GE GG+P+ L + + V +G D + Sbjct: 313 LADTLAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 YIG 356 Y Sbjct: 373 YER 375 >gi|221140247|ref|ZP_03564740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus str. JKD6009] Length = 347 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium HTCC5015] gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium HTCC5015] Length = 363 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 112/355 (31%), Positives = 171/355 (48%), Gaps = 17/355 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---EA 67 M+ AL+ + + T +NP V C+I + V+ G G HAEV+AL+ E + Sbjct: 1 MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 ATAYVTLEPCSHYG++ PC++ +I+ GI RVV + DP+ V+G GL L Q G+ + Sbjct: 61 STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ESE + ++ R + LK+A S D +A S IT ++ H Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTAL 241 RA++DAI+ G+ TVLAD+ LT R + Q P+R++LD + D+ ++ A Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAA 297 +I+ + D A + DL +L L GV E GA Sbjct: 241 RV-LILHRDGADSPRLRALLDAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGAR 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349 +A S + LVD ++ Y + ++IG P L+ +K F V G D Sbjct: 300 LAGSLLEEGLVDELLYYLAPVLIGSEAKPIAEFSLQALSEKKAFKVVEERRMGRD 354 >gi|227537349|ref|ZP_03967398.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingobacterium spiritivorum ATCC 33300] gi|227242852|gb|EEI92867.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingobacterium spiritivorum ATCC 33300] Length = 350 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 107/348 (30%), Positives = 171/348 (49%), Gaps = 17/348 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 R+M L + G S NP V +IV + +IG G T+ G PHAEV A+++ ++ Sbjct: 5 ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAIQQVKDQY 64 Query: 67 -------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+G+GL L Sbjct: 65 PDSADRLLAESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVNGKGLGIL 124 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 Q GI + ++E E + TR + R ++ LK A + D + I+ Sbjct: 125 QQAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYVILKWAETADGYMAKNTDEQAWISNEA 184 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 SK VH R++ DAILVG T L D+P LT R + ++P R+++D + + I Sbjct: 185 SKQLVHRWRSEEDAILVGTRTALIDNPSLTVR--EWEGNNPKRVLIDKQLSVPESAAIFS 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 V + D R K I + D + +L L + S+++EGGA Sbjct: 243 EDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSIIIEGGAKT 297 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 FI++ L D + RS V+ EGGI +P+ EG L++ D++ Sbjct: 298 LQLFIDAGLWDEARVIRS-KVLWEGGIKAPVVEGELKEQQAVASDDFY 344 >gi|254449430|ref|ZP_05062867.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 238] gi|198263836|gb|EDY88106.1| riboflavin biosynthesis protein RibD [Octadecabacter antarcticus 238] Length = 359 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 129/359 (35%), Positives = 189/359 (52%), Gaps = 19/359 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M AL R +G NP+V C+IV+ G VIGRG TA GG PHAE +AL+ + Sbjct: 1 MGMALSLGRRGLGRVWPNPNVGCVIVRPCENGGRVIGRGWTADGGRPHAETRALDSI--D 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPC+H+ ++PPC +I + RVV+ DPD RV+G+G+ L GI + Sbjct: 59 AAGATAYVTLEPCAHHAKTPPCVDALIAANVSRVVIATGDPDPRVAGKGIAILRAAGIDV 118 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E E ++ + +L R E R +TLK+A S D I A S ITG ++ +VH Sbjct: 119 MIGVREDEARVDMAGFLLRITENRPLVTLKLASSFDGRIAAATGESKWITGPDARRKVHA 178 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA DA+LVG GTV ADDP LT R G P+RI+ + + ++ T AP+ Sbjct: 179 MRAAHDAVLVGAGTVRADDPTLTVREMGA-VRQPVRIVASGRLDMGA-ANLLATINYAPL 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + V A + + + CD + D ++ L G+T + EGG ++A S Sbjct: 237 WLCHGAN--VDAQKWVDQGAKSLPCDLQGREIDPVDMMHKLAAAGLTRVFCEGGGSLAAS 294 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + + LVD I+ + + IV+G G PS L+ F V G+D+ + Sbjct: 295 LLGAGLVDEIVGFTAGIVLGAEGTPSIGAMGLDRLADAPRFDLVETTRIGADIMHRWRR 353 >gi|159037490|ref|YP_001536743.1| riboflavin biosynthesis protein RibD [Salinispora arenicola CNS-205] gi|157916325|gb|ABV97752.1| riboflavin biosynthesis protein RibD [Salinispora arenicola CNS-205] Length = 353 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 183/369 (49%), Gaps = 27/369 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ A Sbjct: 1 MAGVSVDEA-MRRAVELAARGLGTTSPNPVVGCVLLDPGGRVVGEGFHAYAGGPHAEIVA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AGE ARG TA VTLEPC H GR+ PC+ +++ GI RVV+ V DP+ R + G L Sbjct: 60 LAQAGERARGGTAVVTLEPCDHTGRTGPCSTALVQAGIARVVIAVPDPN-RAASGGAATL 118 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + + +E + A+LT ++ K A + D A S+ IT + Sbjct: 119 RAAGIRVDLGVRAAEAEAGNVAWLTSTRRGWPYVIWKYAATLDGRSAAADGTSMWITSEV 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LR DA+L G+GTVLADDP LT R L P+R+++D + ++ Sbjct: 179 ARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSTGRTPPGAR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + A AP I T + + + +L LL L RGV + LVEGG Sbjct: 239 VRDDA--APTWIATAEE------------VGVDPEGRVELAGLLAALHQRGVRAALVEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +A +F+ + LVD I+ Y + ++G G P+ L E + + + + + Sbjct: 285 PRLAGAFLAAGLVDKIVGYVAPRLLGAG--PAALTEAGVTTITEAIDCEVVD----VTQV 338 Query: 356 GKNLCLQEL 364 G +L + L Sbjct: 339 GPDLRITAL 347 >gi|270295600|ref|ZP_06201801.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20] gi|270274847|gb|EFA20708.1| riboflavin biosynthesis protein RibD [Bacteroides sp. D20] Length = 351 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 111/336 (33%), Positives = 174/336 (51%), Gaps = 23/336 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++S + ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ Sbjct: 1 MNSEEEKYMLRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRS 60 Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L Sbjct: 61 VKDTSLLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLK 120 Query: 121 QKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGF 177 G ++ ++E+E + + ++T +R +ITLK A S D I V ++ Sbjct: 121 DAGREVIVGVLETECRQLIRRFITFHTLRRPYITLKWAESSDRYIDYSRTDGKPVILSSP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ VH RA+ AILVG T D+P L R SP+RI+LD KLS + Sbjct: 181 LTSMLVHKKRAEHSAILVGTRTAELDNPGLNVR--HWYGRSPVRIVLDRQQKLSPSLHLF 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292 + P ++ TE L N+ Y D L +++ +L RG+ SLLV Sbjct: 239 DGS--VPTLVFTEIPHAPLP--------NVEYLPVSDYRQNILPEIMEMLYTRGLQSLLV 288 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 EGG+ SFI++ L D I + + ++ G+ +P Sbjct: 289 EGGSQTLQSFIDAGLWDEIFVEEAPHLL-HSGVKAP 323 >gi|257877850|ref|ZP_05657503.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC20] gi|257812016|gb|EEV40836.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC20] Length = 358 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 172/361 (47%), Gaps = 12/361 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66 +M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+ E+ Sbjct: 4 EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHFSED 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +T YVTLEPC+H G+ PPC Q II+ GI++VV+ DP+ V+G+G Q+L ++GI + Sbjct: 64 LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVIGQLDPNPIVAGQGKQFLEEQGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+ + Y +R ++ LK A++ D I ITG VH Sbjct: 124 LVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244 R ILVG TVL DDP L + P+RI+LD + + + AP Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTVE--TSFPPIRIVLDRRGRTLSQPHLALFADDSAP 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I T+ ++ ++++I + + LL L R V SL VEGGAA+ +F+ Sbjct: 242 VWIFTQQ----TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLA 297 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 S L I Y + +G + S E + + V G DVC+ C Q Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357 Query: 363 E 363 + Sbjct: 358 D 358 >gi|168043725|ref|XP_001774334.1| predicted protein [Physcomitrella patens subsp. patens] gi|162674326|gb|EDQ60836.1| predicted protein [Physcomitrella patens subsp. patens] Length = 521 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 168/374 (44%), Gaps = 20/374 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +SS D + + A + GLT+ +P+ C+I +G G G AEV A+E Sbjct: 34 LSSDDTQHLLRAAELAESSAGLTAPHPNFGCVIAHGPKSVGEGFLYAQGTKSAEVLAVER 93 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+ ATAY+ LEP +G + + + G+ RVV+ + P + G+ + L Q Sbjct: 94 AGELAKNATAYLNLEPGDCHGD-ASAVRALRQAGVSRVVIGISHPLQHLHGKAISALRQG 152 Query: 123 GIIVDRMME-------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 G+ V+ + ++ +L R + LK A++ D I + Sbjct: 153 GVHVEVGGQNLLECGSSTQEALKACQLVNAPFLFRAANSMPYSILKYAITVDGKIATSTG 212 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ++ S+ +V RA+SDA++VG TV D+P LT R G + P+RI++ Sbjct: 213 HSYWVSSTQSRKRVFETRARSDAVIVGGNTVRRDNPRLTTRQEG--GNLPVRIVMSRCLN 270 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L D+ + + +++ + +P K + ++ D + ++ RG S Sbjct: 271 LPKDANLWDVSTTQTIVMTQKGANPGFQKILASKGVEVVEFDVLTPRAVMEHCYDRGFLS 330 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +L E G +A I S + ++ + S +IG P+P+ E + + ++ SD Sbjct: 331 VLWECGGTLAAPAIASGAIQKVMAFISPKIIGGITAPTPVGELGMAEMTQALQL----SD 386 Query: 350 VCLEYIGKNLCLQE 363 V E IG ++ + Sbjct: 387 VAFEQIGPDMLMTG 400 >gi|302866839|ref|YP_003835476.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] gi|302569698|gb|ADL45900.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] Length = 353 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 175/367 (47%), Gaps = 28/367 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A Sbjct: 1 MASVSVDEA-MRRAIELAVRGLGATSPNPVVGCVLLDTDGEVVGEGFHAYAGGPHAEIVA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG ARG TA VTLEPC H GR+ PC+ +I G+ RVV+ V DP+ V+ G L Sbjct: 60 LAQAGTRARGGTAVVTLEPCDHTGRTGPCSHALIAAGVSRVVIAVPDPNP-VASGGAATL 118 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + + E + A+LT ++ K A + D A S+ IT Sbjct: 119 RAAGVQVALGVRAQEAEAGNVAWLTSMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LR DA+L G+GTVL DDP LT R + P+R+++D + D++ Sbjct: 179 ARIDVHALRGTVDAVLAGVGTVLTDDPRLTARNLRDGTMAIRQPLRVVVDSSGRTPADAR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + A A I T + DL LL L RGV + L+EGG Sbjct: 239 VRDGA--ARTWIAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 +A +F+ + LVD I+ Y + ++G G P+ L + + + G D+ Sbjct: 285 PTLAGAFLAAGLVDRIVGYVAPKLLGAG--PTALLDAGVSTIADAIDLEITDVTRVGPDL 342 Query: 351 CLEYIGK 357 + + + Sbjct: 343 RITALPR 349 >gi|258424182|ref|ZP_05687064.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635] gi|257845803|gb|EEV69835.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9635] Length = 347 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D ++ G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLNTHGDETLRDHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|325299195|ref|YP_004259112.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM 18170] gi|324318748|gb|ADY36639.1| riboflavin biosynthesis protein RibD [Bacteroides salanitronis DSM 18170] Length = 356 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 173/350 (49%), Gaps = 18/350 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +++S ++ ++ + T NP V +IV +IG G G HAEV A+ Sbjct: 2 TQDEKYISRCIQLAKNGLCNTPPNPMVGAVIVYQDRIIGEGYHIRCGEGHAEVNAIASVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +E R +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L Sbjct: 62 DESLLRQSTLYVSLEPCSHYGKTPPCADLIIRKGIPRVVVGCTDPFPLVSGRGIQKLRDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFIS 179 G+ + ++E E K + ++T +++R +ITLK A S D I V ++ ++ Sbjct: 122 GVEVKVGVLEQECKDLIRRFVTFNLKQRPYITLKWAQSADGFIDVLRQEGTPVKLSSPLT 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH LRA+ AILVG T L D+P LT R +P+R+++D L ++ Sbjct: 182 SMYVHKLRAEHQAILVGRKTALLDNPSLTVR--EWYGKNPLRLVIDRDLSLPASLRLFDG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAA 297 + P + T + N+ + D +D L ++ L V SLLVEGG+ Sbjct: 240 S--TPTWVFTSKEKASRP------NLTYVRLDFGQDILPQIAQALCENKVQSLLVEGGST 291 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFG 347 + SFI+ + D I + V+G G+P+P + + G Sbjct: 292 LLQSFIDRGMWDEIYAEHTSAVLG-KGVPAPAIPSGIPVGYSIRDNSVIG 340 >gi|283471035|emb|CAQ50246.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ST398] Length = 347 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|18976434|ref|NP_577791.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638] gi|18891968|gb|AAL80186.1| riboflavin-specific deaminase [Pyrococcus furiosus DSM 3638] Length = 354 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 110/327 (33%), Positives = 169/327 (51%), Gaps = 20/327 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM ALR +R GLT+ NP V ++VKD +IG G G HAEV A+E+A + Sbjct: 3 DEKFMKLALRLARKGEGLTNPNPMVGAVLVKDNKIIGTGWHKRFGDKHAEVNAIEDAKRK 62 Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GAT YVTLEPCSH+G+ PPCA IIE GI RVV+ + DP+ VSGRG++ L + G Sbjct: 63 GYTIEGATLYVTLEPCSHWGKQPPCADRIIEEGISRVVIAMVDPNPLVSGRGIKKLKEAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++E E K ++ K +++K+A++ D I S IT ++ + Sbjct: 123 VEVKVGVLEEEAKKLNEIFVKYITTKIPFVSIKLALTLDGFIATQNFKSKWITDEKARGE 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK---IIKT 239 V LR + AI+VG T++ D+P L CR+ G E ++ILD K++ K ++ Sbjct: 183 VQKLRRRHMAIMVGANTIIQDNPRLDCRIKGCTEK--FKVILDSQGKVADFIKKGHKLRV 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 VI+ T+ + + + ++L L G+ S+L+EGG +A Sbjct: 241 FENGKVIVFTKRPEKFKGICEAY--------PITEPFEILKKLGEIGIDSVLIEGG-RIA 291 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP 326 F+ D + L+ + G G P Sbjct: 292 GEFL--NFADKLYLFYGPKIFGRGIKP 316 >gi|326563101|gb|EGE13374.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 12P80B1] Length = 350 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 177/364 (48%), Gaps = 37/364 (10%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKI 236 V LRAQS AI+ G GT++AD+P LT R L P +I+D +L Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRL------ 242 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGG 295 +D + R + DL LL L +L+E G Sbjct: 243 --------------SDSDNYQVLNRDDTLIW----RNDLMSLLKTLVSQYACYDVLIEAG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352 + ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344 Query: 353 EYIG 356 Y Sbjct: 345 IYRS 348 >gi|315924110|ref|ZP_07920336.1| riboflavin biosynthesis protein RibD [Pseudoramibacter alactolyticus ATCC 23263] gi|315622512|gb|EFV02467.1| riboflavin biosynthesis protein RibD [Pseudoramibacter alactolyticus ATCC 23263] Length = 374 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 180/361 (49%), Gaps = 13/361 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL +R +G TS NP V C++V++G+V+ G G HAE AL ++ Sbjct: 14 EAFMRRALALARQGMGHTSPNPMVGCVVVQNGVVVAEGYHERVGGYHAERNALTHCEKDL 73 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 A YVTLEPC HYG++PPC + IIE GI RV V D + +V+GRG++ L GI +V Sbjct: 74 SDADLYVTLEPCCHYGKTPPCTEIIIERGIGRVFVGSLDVNPKVAGRGVKILEAAGIEVV 133 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E++ + + + + K A++ D I A + ++G S+ QV + Sbjct: 134 TGILETKCRKLNEVFYHYMTMRTPFVVSKYAMTLDGKIACASGDAKWVSGEASRAQVQRM 193 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R Q I+VGIGTV+ADDP L CR+ P+RI+ D + + L S+I++TA PVI Sbjct: 194 RKQYSGIMVGIGTVMADDPMLNCRIEA--GVDPVRIVCDSNLHIPLASRIVQTAGDIPVI 251 Query: 247 IVT--ENDDPVLALAFRKKNINIIYCD---CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + A A + + ++ DL L+ +L R + S+L+EGGA + + Sbjct: 252 VACTETAAASAKATALQAAGVTVLPAGDGTRVDLNILMRLLGRREIDSVLLEGGATLNAA 311 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIG 356 + +V+ ++ + + ++G P P+ + V G D+ + Sbjct: 312 AFEAGVVNKVVAFIAPKLVGGAAAPPPVGGAGIPCMADAIVLTSVETGRCGDDLWVSGYP 371 Query: 357 K 357 Sbjct: 372 D 372 >gi|314933920|ref|ZP_07841285.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87] gi|313654070|gb|EFS17827.1| riboflavin biosynthesis protein RibD [Staphylococcus caprae C87] Length = 349 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 174/354 (49%), Gaps = 12/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AGE A+ Sbjct: 3 RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGENAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT YV+LEPC+H+G +PPC IIE GIR+V+ V D ++ +G + L + GI V+ Sbjct: 63 DATIYVSLEPCTHHGSTPPCVNKIIEFGIRKVIYAV--KDTTLASKGDEILKEAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + +T+K++ S D S IT K V+ LR Sbjct: 121 QFNENAAELYKDFFTAKRNSIPELTVKVSSSLDGKQATDSDESKWITNKEVKEDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G T+ ADDP T R+ P+R+IL ++ + ++ +P+ I Sbjct: 181 EHDAVLTGRKTIDADDPLYTTRVQ--DGKHPIRVILSKSGQIDFEQQLF-ADTASPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN++ L K+I II + D +L L RG+ LLVE G V F+ S + Sbjct: 238 TENEN--LKNQSNDKHIEIICLEKCDSTAILKDLYQRGIGKLLVEAGPNVTSQFLQSHHL 295 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D +ILY + +IG G + + F V ++ L+ K Sbjct: 296 DELILYLAPKLIGGSGKHQFYKTDQVIDLPEATQFEIVYSKLINQNLKLKLRKK 349 >gi|320142810|gb|EFW34610.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MRSA177] Length = 357 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 13 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 73 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 131 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 247 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 248 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357 >gi|57652067|ref|YP_186652.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus COL] gi|151221874|ref|YP_001332696.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus str. Newman] gi|161509986|ref|YP_001575645.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|258450849|ref|ZP_05698907.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948] gi|262050319|ref|ZP_06023164.1| riboflavin specific deaminase [Staphylococcus aureus D30] gi|262053078|ref|ZP_06025250.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3] gi|284024817|ref|ZP_06379215.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus 132] gi|294849930|ref|ZP_06790669.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754] gi|304380637|ref|ZP_07363309.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|57286253|gb|AAW38347.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus COL] gi|150374674|dbj|BAF67934.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus str. Newman] gi|160368795|gb|ABX29766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|257861473|gb|EEV84276.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5948] gi|259159032|gb|EEW44104.1| riboflavin specific deaminase [Staphylococcus aureus 930918-3] gi|259161579|gb|EEW46176.1| riboflavin specific deaminase [Staphylococcus aureus D30] gi|269941247|emb|CBI49636.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus TW20] gi|294823269|gb|EFG39699.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9754] gi|304340832|gb|EFM06760.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315195936|gb|EFU26300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus CGS01] gi|329314447|gb|AEB88860.1| Riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus T0131] gi|329727002|gb|EGG63459.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21189] Length = 347 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|300769800|ref|ZP_07079680.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum ATCC 33861] gi|300763251|gb|EFK60067.1| riboflavin biosynthesis protein RibD [Sphingobacterium spiritivorum ATCC 33861] Length = 350 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 169/355 (47%), Gaps = 20/355 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + R+M L + G S NP V +IV + +IG G T+ G PHAEV A+ Sbjct: 1 MNMQ---ERYMQRCLELALLGAGTVSPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAI 57 Query: 61 EEAGEE--------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 ++ ++ + YV+LEPC+H+G++PPCA I++ +R+V + DP +V+ Sbjct: 58 QQVKDQYPDSADRLLEESDMYVSLEPCAHFGKTPPCANLIVKHNLRKVYIACMDPFAQVN 117 Query: 113 GRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 G+GL L + GI + ++E E + TR + R +I LK A + D + Sbjct: 118 GKGLGILQEAGIEVEVGLLEKEALWLNRRFFTRVRQNRPYIILKWAETADGYMAKNTDEQ 177 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 I+ SK VH R++ DAILVG T L D+P LT R + +P R+++D + Sbjct: 178 AWISNEASKQLVHKWRSEEDAILVGTRTALIDNPSLTVR--EWEGSNPKRVLVDKQLSVP 235 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + I V + D R K I + D + +L L + S++ Sbjct: 236 ETAAIFSEDADTIVFNAVKTD-----WQGRIKYIELENYDLYLPQNILYQLYLMDIQSVI 290 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 +EGGA FI++ L D + +S V E GI +P+ EG L++ D + Sbjct: 291 IEGGAKTLQHFIDAGLWDEARVIKS-KVFWEDGIKAPVIEGELKEQHTVASDDVY 344 >gi|282917028|ref|ZP_06324786.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus D139] gi|283770846|ref|ZP_06343738.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus H19] gi|282319515|gb|EFB49867.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus D139] gi|283460993|gb|EFC08083.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus H19] Length = 347 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 167/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNLTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIELPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|239637909|ref|ZP_04678870.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri L37603] gi|239596472|gb|EEQ79008.1| riboflavin biosynthesis protein RibD [Staphylococcus warneri L37603] Length = 347 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA Sbjct: 3 KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAN 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G L GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGIHKVIYAV--KDTTLISKGDDILKNAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + T + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKEVKKDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+L G TV ADDP T R+ P+R+IL KL + ++ +P+ I Sbjct: 181 SHDAVLTGRKTVEADDPLYTTRI--ADGKHPIRVILSKSGKLDFNQQLFHD-YASPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L N+ IIY + D+K +L L +G+ LLVE G + F+ S + Sbjct: 238 TENKN----LKVDNSNVTIIYMEQCDIKSILKDLYQKGIGKLLVEAGPEITSEFLQSDHL 293 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357 D ++LY + +IG G + + F V ++ L K Sbjct: 294 DHLVLYFAPKIIGGSGKYQFFQTDQIVSLPDTTQFEIVNSTLIQQNIKLVLRKK 347 >gi|29349136|ref|NP_812639.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron VPI-5482] gi|29341044|gb|AAO78833.1| riboflavin biosynthesis protein ribD [Bacteroides thetaiotaomicron VPI-5482] Length = 339 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 169/346 (48%), Gaps = 18/346 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68 M + ++ + + NP V +IV DG++IG G G HAEV A+ ++ Sbjct: 1 MRRCIELAKNGLCNVAPNPMVGAVIVCDGLIIGEGYHIRCGEAHAEVNAIRSVKDKSLLS 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127 +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G + Sbjct: 61 RSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFSQVAGRGIQKLRDAGREVTV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185 ++E E + + ++T R ITLK A S D+ I + P+ + ++ VH Sbjct: 121 GVLEKECRYLIRRFITFNTLHRPFITLKWAESADHFIDVERTDGNPVVLSSPLTSMLVHK 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA++DAI+VG T L D+P LT R +P+RI+LD L ++ P Sbjct: 181 KRAETDAIMVGRRTALLDNPSLTVR--NWYGRNPVRIVLDRALSLPHSLRLFDGE--VPT 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I+ T P + I L +++ +L + + SLLVEGG+ + SFI++ Sbjct: 237 IVFTAEKHPDK----KNVTYRTIEFTQDILPQIMKVLYQQKIQSLLVEGGSQLLQSFIDA 292 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 L D + + + + G+ +P + NF +F + Sbjct: 293 ELWDEVYIEKCPCKL-NSGVKAP----EISDNFSYSTEKHFDRQIW 333 >gi|21283440|ref|NP_646528.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MW2] gi|49486593|ref|YP_043814.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MSSA476] gi|297207517|ref|ZP_06923953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911601|ref|ZP_07129045.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH70] gi|21204881|dbj|BAB95576.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MW2] gi|49245036|emb|CAG43497.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887853|gb|EFH26750.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887022|gb|EFK82223.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH70] Length = 347 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|300022486|ref|YP_003755097.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans ATCC 51888] gi|299524307|gb|ADJ22776.1| riboflavin biosynthesis protein RibD [Hyphomicrobium denitrificans ATCC 51888] Length = 368 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 141/362 (38%), Positives = 194/362 (53%), Gaps = 10/362 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALE 61 S+FD M+ ALR + +G T NPSV +I + G ++ RGVTA GG PHAE QA+ Sbjct: 7 SAFDEEMMAIALRMAERGLGATMPNPSVGAVIADETTGEILARGVTAPGGRPHAETQAIA 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG+ RGAT YVTLEPCSH+GR+ PCA+ I+ G++R VV ++DPD RVSGRGL L Sbjct: 67 AAGDRVRGATIYVTLEPCSHHGRTGPCAEAIVAAGLKRAVVAIEDPDPRVSGRGLDKLRD 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC-GSVPITGFIS 179 G+ +V + +E + ++ R E+R T+K+A+ I + +T ++ Sbjct: 127 AGLEVVRGVGAAEARRITRGHIVRITERRPFTTVKLALDGSGEIARGNGVSPIWVTAEMA 186 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + LLRA DAILVG TV DDPELTCRL GL + SP RIIL + +K++++ Sbjct: 187 RAHGMLLRAHYDAILVGSATVRDDDPELTCRLPGLIDRSPARIILSRSLDIPAGAKLVRS 246 Query: 240 ALLAPVIIVTEND-DPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEG 294 A P ++T D DP + I I L ++ LVGRGVT LLVEG Sbjct: 247 ASGVPTWMMTAPDSDPQKREQLTSHGVEIHDIPIVGQSLWLPAIMEALVGRGVTRLLVEG 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G + SF + LVD +ILY + + G+ +E V R G D Sbjct: 307 GPRIWRSFAEASLVDEVILYMAGMP-GDDVAMDAIERQLGPVALSLVDRRTMGGDTMWRL 365 Query: 355 IG 356 Sbjct: 366 HR 367 >gi|326571732|gb|EGE21745.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC8] gi|326571813|gb|EGE21819.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC7] gi|326574353|gb|EGE24296.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis CO72] Length = 350 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 37/364 (10%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKI 236 V LRAQS AI+ G GT++AD+P LT R L P +I+D +L Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRL------ 242 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGG 295 +D + R + DL LL L +L+E G Sbjct: 243 --------------SDSDNYQVLNRDDTLIW----RNDLMSLLKTLVSQYACYDVLIEAG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCL 352 + ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ L Sbjct: 285 SELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDIRL 344 Query: 353 EYIG 356 Y Sbjct: 345 IYRS 348 >gi|291287235|ref|YP_003504051.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM 12809] gi|290884395|gb|ADD68095.1| riboflavin biosynthesis protein RibD [Denitrovibrio acetiphilus DSM 12809] Length = 387 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 177/349 (50%), Gaps = 10/349 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M + + G T TNP V ++ ++ RG G PHAEV A++ G Sbjct: 12 MQECAQLALLGKGYTKTNPVVGAIVANQSEILSRGWHMAYGGPHAEVNAIDSCPVSTEGL 71 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPCSH G++PPC + I++ GIRRV + V DP+ V+G+G+++L G+ + Sbjct: 72 DLYVTLEPCSHSGKTPPCVEKIVKSGIRRVFIGVVDPNPLVAGKGVEYLKNHGVEVYVGY 131 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ME + ++ EK+ + T K A + D I + S I+ S+ H +RA Sbjct: 132 MEDLCASIIEDFVKFITEKKPYYTFKTAQTLDGKIASSTGDSKWISSEASRTYTHYMRAV 191 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 SDAILVG+ TV+ADDPEL R+ + P +I+LDP ++ LD K+++ + + + Sbjct: 192 SDAILVGVNTVIADDPELNVRMV-KSDRDPFKIVLDPKGRMPLDRKLVENSADKLIYVTC 250 Query: 250 ENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 AL + ++ + D DL L LV R + ++++EGG A F ++ LV Sbjct: 251 AESRITEALRNKGADVITLGGDGSLDLNVLSDELVERSILNVMIEGGGTTAGKFFDAGLV 310 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 D + ++ + +++G G S + +E V+ +F D+ + Sbjct: 311 DKVNIFIAMMIMG--GSVSSVGGNGVENVAQAYKLKEVQSKHFEGDLMI 357 >gi|298248927|ref|ZP_06972731.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297546931|gb|EFH80798.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 383 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 179/367 (48%), Gaps = 20/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 D FM A+ + G TS P+V +IV+D VIGRG T+ PHAE+ AL EAG Sbjct: 3 DLEFMQQAIACAHSVEGHTSPRPAVGAVIVRDNRVIGRGATSPPYGPHAEIHALNEAGAT 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GA Y TLEPC +PPC + II GIRRV++ DP+ RVSGRG+ L + GI Sbjct: 63 AASGADLYTTLEPCCIAIHTPPCTKAIIAAGIRRVIIGALDPNPRVSGRGVAQLREAGIN 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + + E + + T + R ++T K A++ D + + I+G ++ VH Sbjct: 123 VVTGIAQQETSALIRPFATYITQGRPYVTAKWAMTLDGKLATHTGDAHWISGPAARTWVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-------EHSPMRIILDPHFKLSLDSKII 237 LR + DAI++G GT AD+P LT RL Q P+RI+L + KL ++ Sbjct: 183 QLRDRVDAIMIGAGTAHADNPLLTVRLTEAQRVHKRTPRQDPLRIVLSSYGKLGSHLHLL 242 Query: 238 KTALL-APVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLL 291 + L ++V+E R++ + +I DL L IL +G+ LL Sbjct: 243 QEQLAPGTCVMVSETSSLQQREDLRQRGVQVIEVPANKTGQVDLVAALNILAQKGIMHLL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346 +EGG+ + + L+D + + + +IG G PSP+ L V Sbjct: 303 LEGGSNLLGTAFGHNLIDHVAAFIAPKLIGGAGSPSPIGGSGLAVMQHALRLQGVSIQTI 362 Query: 347 GSDVCLE 353 D+ +E Sbjct: 363 DEDLLIE 369 >gi|329964682|ref|ZP_08301736.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057] gi|328525082|gb|EGF52134.1| riboflavin biosynthesis protein RibD [Bacteroides fluxus YIT 12057] Length = 349 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 172/331 (51%), Gaps = 18/331 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + + ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ Sbjct: 2 NTEEKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVK 61 Query: 65 EEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 E A + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L Sbjct: 62 EPALLKKSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCRDPFSKVAGRGIQKLKDA 121 Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFIS 179 G ++ ++E E K + ++T +R +ITLK A S D I + V ++ ++ Sbjct: 122 GREVIVGVLEEECKSLIRRFITFHTLQRPYITLKWAESADKYIDLNRTNGSPVVLSSPLT 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH RA+ AI+VG T D+P L R SP+RI+LD L + Sbjct: 182 AMLVHKKRAEHKAIMVGTHTAWLDNPSLNIR--HWSGKSPVRIVLDKKQSLPASLHLFDG 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAA 297 + P ++ TE L N+ + D RD L +++ L RG+ SLLVEGG+ Sbjct: 240 S--VPTLVFTEMPHKPLP------NVEYLPIDYQRDILPQIMETLYKRGIQSLLVEGGSI 291 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 + SFI++ + D I + + ++ G+ SP Sbjct: 292 LLQSFIDAGMWDEIFVEEAPNLL-HSGVKSP 321 >gi|256842978|ref|ZP_05548466.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 125-2-CHN] gi|256848647|ref|ZP_05554081.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US] gi|262045946|ref|ZP_06018910.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus MV-3A-US] gi|293381447|ref|ZP_06627444.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 214-1] gi|256614398|gb|EEU19599.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 125-2-CHN] gi|256714186|gb|EEU29173.1| riboflavin biosynthesis protein [Lactobacillus crispatus MV-1A-US] gi|260573905|gb|EEX30461.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus MV-3A-US] gi|290921994|gb|EFD98999.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus 214-1] Length = 353 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 170/354 (48%), Gaps = 9/354 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M A++ ++ + T NP V +IVKDG ++ G G HAE A+ + Sbjct: 1 MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK 60 Query: 63 AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+ L Q Sbjct: 61 LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++E + K Y ITLK AVS D I A IT Sbjct: 121 HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKT 239 +VH RA AI++G T + D+P L + + P+RII+D +L I + T Sbjct: 181 QRVHRERANYQAIMIGSNTAIIDNPSLLTTVT--TDFPPIRIIVDRRGRLLNHLNIKLLT 238 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L+P I T+N LA +NI+I + +++ L + S+ VEGG +A Sbjct: 239 DKLSPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLA 296 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ + V+++I Y S I++G+ G + +R + + +E Sbjct: 297 NALLAEGQVNNLITYISPILLGQKGK--LGISPSSKTTLHNLRAEKLDDNFRIE 348 >gi|227877508|ref|ZP_03995573.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus crispatus JV-V01] gi|227862901|gb|EEJ70355.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus crispatus JV-V01] Length = 356 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 170/354 (48%), Gaps = 9/354 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +M A++ ++ + T NP V +IVKDG ++ G G HAE A+ + Sbjct: 4 MENSDEAYMQLAIQEAKKGLYQTWKNPMVGAVIVKDGNILATGHHIRYGYYHAERDAISK 63 Query: 63 AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ +T YVTLEPCSHYG+ PPC+ I+ I+RVV+ DP V+G+G+ L Q Sbjct: 64 LTPEQLFNSTLYVTLEPCSHYGKQPPCSDLIVSSKIKRVVIAQVDPHQLVTGKGIAKLRQ 123 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++E + K Y ITLK AVS D I A IT Sbjct: 124 HNIQVTVGVLEDQAKKLNKFYTYFYQHNHPWITLKQAVSLDYRINEAKNIRTQITNETVY 183 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKT 239 +VH RA AI++G T + D+P L + + P+RII+D +L I + T Sbjct: 184 QRVHRERANYQAIMIGSNTAIIDNPSLLTTVT--TDFPPIRIIVDRRGRLLNHLNIKLLT 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 L+P I T+N LA +NI+I + +++ L + S+ VEGG +A Sbjct: 242 DKLSPTWIFTQNTS--LAKTPHNENISIFLMKNASITEVIKKLTNEEIQSVYVEGGPTLA 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ + V+++I Y S I++G+ G + +R + + +E Sbjct: 300 NALLAEGQVNNLITYISPILLGQKGK--LGISPSSKTTLHNLRAEKLDDNFRIE 351 >gi|322434629|ref|YP_004216841.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9] gi|321162356|gb|ADW68061.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX9] Length = 373 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 129/370 (34%), Positives = 187/370 (50%), Gaps = 17/370 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 S D +FM AL + L S NP V C+ V+DG +I G Y HAE+ AL++A Sbjct: 2 SQDQQFMQRALELAESTTALASPNPQVGCVFVRDGKIIAEGFHLYEARDHAEIAALKQAE 61 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + G TAYVTLEPCSH+GR+ PCA +I GI R V+ D + V G G+ L Sbjct: 62 ANGIDVAGDTAYVTLEPCSHHGRTGPCADVLIAAGISRCVIATLDANPVVRGNGVAKLEA 121 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-----PIT 175 GI + ++E + + A+ +TLK A+S D + +T Sbjct: 122 AGIAVTVGVLEQKARTLNDAFAWSIRHNLPMVTLKAALSVDGKLAPPPSQRQRPEPHWLT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM-RIILDPHFKLSLDS 234 G S+ +V LR SDAIL GIGTVLADDP LT R GL P+ RIILD H ++ + S Sbjct: 182 GPESRAEVQRLRHASDAILTGIGTVLADDPTLTDR-TGLPRRRPLQRIILDAHLRIPVAS 240 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNIN---IIYCDCRDLKKLLTILVGRGVTSLL 291 K++++A +I +N A + D DL+ +L+ L R + S+L Sbjct: 241 KLVESAADDLLIFCNQNAPQDRLTALEAAGAEIHQVPGTDRLDLRAILSTLHERKLLSVL 300 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGS 348 +E G ++ +F+ + LV IL+ + +GEG +P + LE+ V R FG Sbjct: 301 LEAGPSLNGAFLAAHLVQRAILFYADTELGEGALPFAEDLTNPHLLEQTMTHVTRTTFGP 360 Query: 349 DVCLEYIGKN 358 D C+ + +N Sbjct: 361 DGCVSGLLQN 370 >gi|257868250|ref|ZP_05647903.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30] gi|257874477|ref|ZP_05654130.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC10] gi|257802364|gb|EEV31236.1| riboflavin-specific deaminase [Enterococcus casseliflavus EC30] gi|257808641|gb|EEV37463.1| riboflavin biosynthesis protein RibD [Enterococcus casseliflavus EC10] Length = 358 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 172/361 (47%), Gaps = 12/361 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EE 66 +M A+ ++ T TNP V +IVK+ VI +G G PHAE A+E+ E+ Sbjct: 4 EYMRLAIAEAKKGRYQTFTNPLVGAVIVKEQRVIAKGAHLVYGQPHAERNAIEQCHSSED 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 +T YVTLEPC+H G+ PPC Q II+ GI++VVV DP+ V+G+G ++L ++GI + Sbjct: 64 LINSTLYVTLEPCNHQGKQPPCTQLIIDSGIKKVVVGQLDPNPIVAGQGKRFLEEQGIDV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + E+ + Y +R ++ LK A++ D I ITG VH Sbjct: 124 LVGIEETAVRRLNPHYNFYHQHQRPYVALKQAITLDGRIAHDALTRSAITGSAVWQNVHQ 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLAP 244 R ILVG TVL DDP L + P+RI+LD + + + AP Sbjct: 184 ERGDYQGILVGSQTVLTDDPTLLTTVE--TSFPPIRIVLDRRGRTLSQPHLALFVDDSAP 241 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I T+ ++ ++++I + + LL L R V SL VEGGAA+ +F+ Sbjct: 242 VWIFTQQ----TTVSDLPAHVSVIQLEELTIVSLLKELAARQVQSLYVEGGAAIHDAFLA 297 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 S L I Y + +G + S E + + V G DVC+ C Q Sbjct: 298 SGLWQESITYVAPKFLGGNSLASFTSERTPKQLQQLTEVTVTAVGEDVCIRGRRPEECSQ 357 Query: 363 E 363 + Sbjct: 358 D 358 >gi|320449997|ref|YP_004202093.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01] gi|320150166|gb|ADW21544.1| riboflavin biosynthesis protein RibD [Thermus scotoductus SA-01] Length = 383 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 107/375 (28%), Positives = 180/375 (48%), Gaps = 23/375 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D RF+ AL+ + G T NP V ++V++G V+G G G HAEV AL +AG Sbjct: 9 ELDERFLRRALQLAERARGHTHPNPLVGAVLVREGRVVGEGYHPRAGEAHAEVYALRQAG 68 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 EEA+GAT YV+LEPC+H+GR+PPC+ +++ G+ RVV DP+ ++ GL+ L G+ Sbjct: 69 EEAQGATLYVSLEPCNHFGRTPPCSLALLQAGVARVVAAARDPNP-LAQGGLERLRAGGV 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E+E + + Q + R + LK A++ D + + ++ S+ Sbjct: 128 EVEAGLLEAEAQGQNEVFFHVQQKGRPFVLLKAALTLDGKVAALSGDARYVSSEESRRVA 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSLD 233 R ++VG+GTVL DDP LT R + P++++LD + Sbjct: 188 QAYRQWLPVVMVGVGTVLKDDPWLTVREPDFRPFPLMLEPPPLRDPVKVVLDTEGRTPPT 247 Query: 234 SKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285 ++I + ++V + A + ++ L L +L+ Sbjct: 248 ARIFQKGPRGEPARVYVLVGKGAPKDRLRALEEAGARVVELPREGGRVSLDGALHLLLEE 307 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVR 342 G+ +L+EGG +A +F LVD + L+ + V+GEG LE K VR Sbjct: 308 GLDGILLEGGPRLAGAFWERGLVDKLALFVAPKVLGEGRGFLEGFALERMAEAKRLRLVR 367 Query: 343 RDYFGSDVCLEYIGK 357 +++ G D+ LE + Sbjct: 368 KEWLGEDLWLEAYPE 382 >gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis] gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis] Length = 600 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 97/367 (26%), Positives = 170/367 (46%), Gaps = 19/367 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA F+ A + G TS +P+ C+I G V G G G AEVQA+E AGE Sbjct: 37 DAAFIKRAAELADKSAGCTSPHPNFGCVIATATGNVAGEGYLYAQGTKPAEVQAVEAAGE 96 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ++GATAY+ LEP +G + +++ GI RVVV + P + G + L G+ Sbjct: 97 WSKGATAYLNLEPGDCHGDHTAVSS-LVQAGITRVVVGIRHPLRHLQGNAVHALRNHGLQ 155 Query: 126 VDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 V+ + E + + R + LK A++ D I + + + Sbjct: 156 VEVLGEDLQSKIIEDARKSCLLVNAPLIHRATSRVPFSVLKYAMTLDGKIAASSGHAAWV 215 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + S+N+V LR++SDAI+VG TV D+P LT R G E+ PMRI++ L ++ Sbjct: 216 SSRKSRNRVFELRSRSDAIIVGGNTVRRDNPRLTARHGG--EYMPMRIVMSQTLDLPEEA 273 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + ++ +++ K + ++ + + ++++ RG S+L E Sbjct: 274 NLWDVCDVSTIVVTQRGARRSFQKLLASKGVEVVEFEILNPREVMEYFHDRGYLSILWEC 333 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G +A S I++ ++ + + + +IG PSP+ E + + + DVC E Sbjct: 334 GGTLAASAISAGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMTQALDLV----DVCYEQ 389 Query: 355 IGKNLCL 361 +G ++ + Sbjct: 390 VGPDMLI 396 >gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bordetella bronchiseptica RB50] gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bordetella bronchiseptica RB50] Length = 374 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 175/355 (49%), Gaps = 15/355 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M AL +R + T+ NP V C+IV+DG V+G G T G PHAEV AL EA G Sbjct: 1 MRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT YVTLEPCSH+GR+PPC + RVVV + DP+ RV+G+GL L GI + Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVT 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + E + R + LK+A S D + S ITG ++ H Sbjct: 121 EDVCRDEALELNAGFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+S +L G+GTVL DDP+L R H P + ++D F++ D+++ A V+ Sbjct: 181 RARSGVVLTGMGTVLKDDPQLNAR-AVQTSHPPRKAVIDGRFEIPEDARLFDDG--AQVL 237 Query: 247 IVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T D A +N +I D DL ++ L + + + VE GA ++ + Sbjct: 238 VFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGA 297 Query: 302 FINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGSDVCLE 353 + VD +++Y + +++G+ + PL E + F G+DV L Sbjct: 298 LLAEDCVDELLVYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLR 352 >gi|312128288|ref|YP_003993162.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor hydrothermalis 108] gi|311778307|gb|ADQ07793.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor hydrothermalis 108] Length = 371 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 166/344 (48%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YV+LEPC H+G+ PPC + II+ GI++VV+ DP+ V+G+G+Q L Q GI Sbjct: 68 SLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVIATRDPNPFVNGKGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++E E + + +I +K+A S D I VH Sbjct: 128 VVEGVLEKEAESINKDFFKYMKTGIPYIAIKVAHSIDGKIATPSNKRFLFNTEEENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R G P+R++LD ++ + I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPFECNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ +L + + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLELSDVFSKLAQQKIVSVLVEGGSL 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + E F + Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGVVGSEGFEDLFPKL 350 >gi|326573500|gb|EGE23466.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis O35E] Length = 350 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 41/364 (11%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234 V LRAQS AI+ G GT++AD+P LT R L P +I+D +LS D Sbjct: 189 DVQRLRAQSAAIITGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293 +++ DL LL L +L+E Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350 G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342 Query: 351 CLEY 354 L Y Sbjct: 343 RLIY 346 >gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS] gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS] Length = 375 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 171/368 (46%), Gaps = 19/368 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 MP DA+ ++ ALR + + LT NP V C++ +G V+G+G T G PHAEV A Sbjct: 1 MPSHEQDAQHIATALRLASDALLLTDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMA 60 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L +A G GATAYVTLEPCSH+GR+ PC +I GI RVV + DP+ V+G+G Sbjct: 61 LRDAAAQGHSVEGATAYVTLEPCSHHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGF 120 Query: 117 QWLSQKGIIVDRMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L G+ V+ E + + +R V K + LK+A S D G+ S IT Sbjct: 121 ERLRAAGVEVEVGPGADESRELNIGFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWIT 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ H RA++ A+L G+GTVL D+P L RL P +++D + D+ Sbjct: 181 SEPARADGHAWRARASAVLTGVGTVLEDNPRLDVRLV-PTPRQPHLVVVDSRLQTPPDAH 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLL 291 I PV I D A A + + DL +L L RGV L Sbjct: 240 IFIAGR--PVWIYAAVRDEAKAAALEARGATVTCLANADGKVDLGAMLKDLAARGVNELH 297 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRD 344 VE G + S I VD +++Y + +IG G PL D Sbjct: 298 VESGHKLNGSLIREGCVDELLVYLAPKLIGRGLDMASHIHADGPLTSLAGVLPLEFKSVD 357 Query: 345 YFGSDVCL 352 F D+ + Sbjct: 358 MFAPDLRI 365 >gi|304391942|ref|ZP_07373884.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130] gi|303296171|gb|EFL90529.1| riboflavin biosynthesis protein RibD [Ahrensia sp. R2A130] Length = 367 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 202/349 (57%), Gaps = 8/349 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 A +M A LR +R H GLT TNPSV L+VKDG V+GRG+TA GG PHAE AL++AG A Sbjct: 16 AEWMGACLRLARRHRGLTGTNPSVGTLLVKDGRVVGRGITAKGGRPHAERVALDQAGPNA 75 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+ AYVTLEPC+H+G +PPCAQ +I G+ V DPD RV G+G L + I V Sbjct: 76 VGSIAYVTLEPCAHHGATPPCAQALINAGVAEVHTAYIDPDHRVDGKGHAMLREAEIAVH 135 Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 SE + YLTR+ R +TLK+AVS+D M+G V ITG +++ VH + Sbjct: 136 AGQGSEIAGSDMRGYLTRKRLGRPMVTLKLAVSRDGMLG-RTGEEVSITGPLARAMVHRM 194 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI VG GTV ADDP+LTCRL+GL+ SP R I D L+ S+++ +A PV Sbjct: 195 RAEHDAIAVGRGTVEADDPDLTCRLSGLEARSPERFIFDSAGVLTETSRLVASARTVPVH 254 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +++ P L + + + L ++L L RG++SL++EGGA +A SF Sbjct: 255 LISTL--PGLPEHLLASGVRHFAAEAENGHIALPEVLDDLGARGISSLMLEGGAQLASSF 312 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +N+ LVD I + +G GI SP+ + F R G + Sbjct: 313 LNAGLVDEIAFFVGAKDVGPDGIASPITLATIPAEFNAGRTLQLGPNQL 361 >gi|312794193|ref|YP_004027116.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181333|gb|ADQ41503.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor kristjanssonii 177R1B] Length = 371 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q L Q GI Sbjct: 68 LLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E + + + + +K+A S D I + VH Sbjct: 128 VVEGVLQKEAESINKDFFKYMKKGIPYTAIKVAQSIDGKIATPSNKRFLFSTEEENLFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R + P+R++LD ++ L+ I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARYGEI-VRQPIRVVLDTKLRIPLECNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ DL + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + E+ F + Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKL 350 >gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Length = 596 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA F+ A S GLTS +P+ C+I G V G G G AE A+E A Sbjct: 30 TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE +RGATAY+ +EP +G + +++ GI RVVV + P + G ++ L G Sbjct: 90 GEFSRGATAYLNMEPGDCHGDHTAVS-ALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148 Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 I V+ + E + + R + LK A++ D I + + Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 266 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + + ++ +++ K + ++ D + ++++ RG S+L Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A S I+S ++ ++ + + +IG PSP+ + + + + DVC Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 382 Query: 353 EYIGKNLCL 361 E +G ++ + Sbjct: 383 EQVGPDMLV 391 >gi|253732422|ref|ZP_04866587.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253723812|gb|EES92541.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 13 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 72 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+ Sbjct: 73 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAQGIEVEC 130 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 131 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 190 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 191 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 247 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + NI IIY DL +L L RGV +LLVE G F+ S + Sbjct: 248 TENPN----LTTNQTNIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 303 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 304 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 357 >gi|227499806|ref|ZP_03929901.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus tetradius ATCC 35098] gi|227218110|gb|EEI83378.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaerococcus tetradius ATCC 35098] Length = 357 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M +R G TNP V ++ KDG VIGRG HAE+ + A GA Sbjct: 7 MRECFSLARKGRGKVLTNPMVGAIVYKDGEVIGRGYHKSFYDDHAEIDCFKNLKGSAEGA 66 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T V LEPCSH+G+ PPC +I I+RVV+ D + +V G+ L GI ++ + Sbjct: 67 TLIVNLEPCSHFGKHPPCVDEVIRRKIKRVVISNIDTNPKV--DGISKLKACGIEVISGV 124 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E EGK + KR + LK A S D I S I+ S+ VH LR Sbjct: 125 LEEEGKKLNEKFFFNMSHKRPLVALKYAQSLDGKIATGKFDSKWISNEKSREFVHQLRND 184 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG T+L D+P LT R++ + P+RII+ L+ D ++ K I + Sbjct: 185 YDAIIVGKNTLLTDNPRLTSRID--KGIDPVRIIVSDSLDLNPDLEVFKENSDGKTYIAS 242 Query: 250 ENDDPVL----ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +D + + + KN +I DL+ LL L + + S+LVEGG+ + +SF+ Sbjct: 243 SSDKDIKLDSGLIRCKSKNGHI------DLEDLLKKLYEKNIGSVLVEGGSVLNNSFLEE 296 Query: 306 RLVDSIILYRSQIVI-GEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLE 353 L+D I + + I++ G + + +G K F FG DV E Sbjct: 297 DLIDKIYQFMAPIIVSGFYSRSAFIGKGVGYIKDAKRFRIDDIKRFGEDVMFE 349 >gi|326561735|gb|EGE12070.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 7169] gi|326569043|gb|EGE19112.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis BC1] Length = 350 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 41/366 (11%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D A S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234 V LRA+S AI+ G GT++AD+P LT R L P +I+D +LS D Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMIPKPKVVIVDRRNRLSDLDDY 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293 +++ DL LL L +L+E Sbjct: 249 QVLNHDNTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350 G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342 Query: 351 CLEYIG 356 L Y Sbjct: 343 RLIYRS 348 >gi|54307992|ref|YP_129012.1| putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum SS9] gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum SS9] Length = 371 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 176/372 (47%), Gaps = 28/372 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 SS D M A+ ++ T+ NP+V C+I + ++G G G PHAEV AL Sbjct: 2 FSSIDHSMMLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFALRA 61 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE+A+GATAYVTLEPCSH+GR+PPCAQ +I + RVV + DP+ +V GRG++ L Sbjct: 62 AGEQAKGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ ++ + ++ R ++ LK+A S D ++ S ITG ++ Sbjct: 122 GIEVQTGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKL 230 V RA++ AIL TV+ADDP L R + L E P R+I+D ++ Sbjct: 182 DVQRFRARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRV 241 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVG 284 + D K+ T + ++ + +D L L+ L Sbjct: 242 TPDFKLFSLEGE------TLLARAEMGQETWPDSVTQVLIPKQDDSEQLNLTSLMLELAK 295 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMC 340 + + + VE GA +A + + LVD +ILY++ ++G +G N Sbjct: 296 QDINHIWVEAGAELAGGLLAAGLVDELILYQAPKLMGCDSRSLINLKGLTSMSQVLNLEI 355 Query: 341 VRRDYFGSDVCL 352 G D+ + Sbjct: 356 TDVRMIGPDLRI 367 >gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12] gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12] Length = 366 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 167/327 (51%), Gaps = 19/327 (5%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D RFM AL + + TS NP V C++V+DG V+G G T G HAEVQA++ Sbjct: 7 SFSEQDQRFMRRALDLAHSAMYRTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVK 66 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G E RGAT YVTLEPC+H+GR+PPCA + G+ RVV + DP+ V+G+GLQ Sbjct: 67 QAWERGHEVRGATTYVTLEPCAHHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQR 126 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + E + +++R V + LK+A S D + + S IT Sbjct: 127 LRDAGIQVDVGLFADEAREINLGFISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSE 186 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ H RA++ A+L G+GTV ADDP+L R P+RI++D + ++++ Sbjct: 187 AARADGHHWRARACAVLTGLGTVRADDPQLNVR-AVQTPRQPIRIVIDSRLECPPTARLL 245 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--------------DLKKLLTILV 283 ++A I+ + + ++ I D + DL+ L+ +L Sbjct: 246 QSADSPLWIVHALSPEQAAPRLAALRSAAIALLDLQDIALPADPDKPGKTDLRALMQVLG 305 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDS 310 RG+ L E G + S + + +VD Sbjct: 306 QRGINELHCEAGEKLNGSLLRAGVVDE 332 >gi|258415855|ref|ZP_05682126.1| riboflavin specific deaminase [Staphylococcus aureus A9763] gi|257839448|gb|EEV63921.1| riboflavin specific deaminase [Staphylococcus aureus A9763] Length = 347 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 167/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDEALRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|326560692|gb|EGE11060.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 46P47B1] Length = 350 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 177/364 (48%), Gaps = 41/364 (11%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I ++RVV+ DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAADLKRVVIASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D MA S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRMGLPYVRLKTASSLDGRTAMASGESKWITGTEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234 V LRAQS AI+ G GT++AD+P LT R L P +I+D +LS D Sbjct: 189 DVQRLRAQSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293 +++ DL LL L +L+E Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350 G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342 Query: 351 CLEY 354 L Y Sbjct: 343 RLIY 346 >gi|296114110|ref|YP_003628048.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4] gi|295921804|gb|ADG62155.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis RH4] Length = 350 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 41/366 (11%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAAAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L Sbjct: 69 QGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D A S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234 V LRA+S AI+ G GT++AD+P LT R L P +I+D +LS D Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293 +++ DL LL L +L+E Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350 G+ ++ +FI LVD +I+Y++ ++G+ P L++ + F D G+D+ Sbjct: 283 AGSELSGAFITEGLVDELIVYQAPCILGQDARPMFACQLDQLVQQYRFGLHSADIIGNDI 342 Query: 351 CLEYIG 356 L Y Sbjct: 343 RLIYRS 348 >gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae EF01-2] gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verminephrobacter eiseniae EF01-2] Length = 371 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 168/350 (48%), Gaps = 11/350 (3%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68 AL + + TS NP V C+I G+VIGRG T G HAE+ AL A G R Sbjct: 11 EALDLAHQGLYRTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVR 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GATAYVTLEPCSH+GR+ PC ++ GI +VV + DP+ V+G+G L G+ + Sbjct: 71 GATAYVTLEPCSHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQV 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + +R + R + +K+A S D + +A S ITG ++ H R Sbjct: 131 GPGAQAARELNVGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWR 190 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A++ A+L GIGTVLADDP L R E P ++LD ++ LD+ I + Sbjct: 191 ARACALLTGIGTVLADDPRLDVRALH-TERQPALVLLDSALRVPLDACIFAADRAVHLYA 249 Query: 248 VTENDDPVLALAFRKKNINIIY--CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 END AL R + ++ DL +L L R V L VE G + + + Sbjct: 250 AAENDAKRRALEQRGATLAVLPDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQ 309 Query: 306 RLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 LVD +++Y + +IG G +PL + + G DV + Sbjct: 310 GLVDELLVYLAPKLIGPGLGMAQLAPLAALSQAQALDFHGLERVGEDVRI 359 >gi|196231665|ref|ZP_03130522.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus Ellin428] gi|196224137|gb|EDY18650.1| riboflavin biosynthesis protein RibD [Chthoniobacter flavus Ellin428] Length = 344 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 162/353 (45%), Gaps = 29/353 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM AAL +R +G TS NP+V +IV+ G +I RG G PHAE++AL + Sbjct: 2 QDEEFMRAALAEARRGLGQTSPNPAVGAVIVRAGKIIARGYHHRAGLPHAEIEALRALPK 61 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ARGAT YVTLEPCS +GR+PPC + II G RRVV+ DP+ +GRG++ L G Sbjct: 62 PALARGATIYVTLEPCSTHGRTPPCVEAIIAAGFRRVVIGTIDPNPSHAGRGVKLLRDTG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E+E + A+ V K + K +S D I +T +++ Sbjct: 122 IAVTTDVLEAECRALNAAFNHWIVTKMPLVIAKAGMSLDGRITRPPGEGQWLTNAVARKD 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR+Q DAIL+G T+ D+P LT R P RI++ KL ++ + Sbjct: 182 AHRLRSQVDAILIGAETLRQDNPRLTVR-GVRGARQPWRIVITRSGKLPKEAHLFTDEHR 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ E L+ +L L R +TS+++EGG V Sbjct: 241 ERTLVYREKS----------------------LRTVLRDLGKRQITSVMIEGGGGVLGEA 278 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 + RLV Y + ++ G + + G ++CL Sbjct: 279 FDRRLVQRAHFYLAPLLCGGPAVVVKGLGVGSNAEAATIRNATYTRLGDNLCL 331 >gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera] Length = 586 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 163/368 (44%), Gaps = 18/368 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D+ + A + G TS +P+ C+I G V+G G G AEVQA+E AG Sbjct: 22 ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E RGATAY+ +EP +G + +++ GI R VV + P + L+ + +G+ Sbjct: 82 ELCRGATAYLNMEPGDCHGDRTAVS-ALVKAGITRAVVGIRHPLQHLRSHALRAMRSEGL 140 Query: 125 IVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 VD + E I + R + LK A++ D I + + Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 I+ S+ +V LR +SDAI+VG TV D+P LT R G H P+RI++ L Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPRLTARHGG--GHVPIRIVMSRTLNLPEV 258 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + + + +++ K + ++ D + + ++ RG S+L E Sbjct: 259 ANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 G +A S I+S ++ + + + +IG P+P+ E + + + D E Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLI----DFSYE 374 Query: 354 YIGKNLCL 361 IG ++ + Sbjct: 375 QIGPDMLI 382 >gi|302791619|ref|XP_002977576.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii] gi|300154946|gb|EFJ21580.1| hypothetical protein SELMODRAFT_106737 [Selaginella moellendorffii] Length = 561 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 163/366 (44%), Gaps = 17/366 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD+ M A + G T+ +P+ AC+I + V+G G AE+QA+E AGE Sbjct: 8 FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +RGATAY+ LEP +G + + + G+ RVVV + P SG+ + L GI Sbjct: 68 LSRGATAYLNLEPGDCHGDDTAI-KALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126 Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 VD + + + L R LK A++ D I + + ++ Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHGVPFSILKYAMTLDGKIAASTGHASWVS 186 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 +S+ +V R +SDAI+VG TV D+P LT R G H P+R+++ L L+ Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRQEG--GHLPVRVVMSRTLNLPLELH 244 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + + +++ + + ++ D K ++ RG S+L E G Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVARGVEVVEFDFLTPKAVMDYCYERGFLSVLWECG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A++ + + ++ +I + + +IG P+P+ E + + + DV E + Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLL----DVTFEQV 360 Query: 356 GKNLCL 361 G ++ + Sbjct: 361 GPDMLV 366 >gi|237737703|ref|ZP_04568184.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium mortiferum ATCC 9817] gi|229419583|gb|EEO34630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Fusobacterium mortiferum ATCC 9817] Length = 358 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 194/359 (54%), Gaps = 11/359 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ AL + G + NP V ++VKDG+V+G G G PHAEV ALE AGE Sbjct: 1 MDKKYMARALELAALGEGSVNPNPLVGAVVVKDGVVVGEGYHKKYGGPHAEVFALEMAGE 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GA YVTLEPCSHYG++PPCA+ IIE GI+R +V DP+ VSGRG++ L GI Sbjct: 61 KAYGADIYVTLEPCSHYGKTPPCAKKIIEMGIKRCIVASLDPNPLVSGRGIKMLQDAGIE 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +ME E K ++ EK+S++ LK ++ D I S IT +++ +V Sbjct: 121 VVTGVMEREAKELNRVFMKYISEKKSYLFLKCGITLDGKIATKTGNSKWITNELAREKVQ 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + I+VGI TVL DDP LT R+ P RI++DP ++ L+SKI+ Sbjct: 181 RLRNRYMGIMVGINTVLKDDPSLTARIE--NGRDPYRIVIDPKLEIPLESKIVNFEDGKS 238 Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHS 301 VII + EN + +K + + Y + + + ++L G+ +++EGG+ + Sbjct: 239 VIITSQENRESEKIKILEEKRVRVEYLEGDEFEVSEILKKTGELGIDGIILEGGSYLISK 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 +D ++ + ++G+ S + +E V+ + +G++V +E+ Sbjct: 299 AFKENAIDGGEIFIAPKILGDSEAISFVRGFSVENIADGFELKNVKINSYGNNVSMEFY 357 >gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp. avenae ATCC 19860] Length = 377 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 179/361 (49%), Gaps = 14/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEE 62 +S FM ALR + + TS NP V C++V +IG+G T G PHAEV AL + Sbjct: 8 ASLPTDFMQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRD 67 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G +GA AYVTLEPCSH+GR+ PC ++E GI RVV + DP+ RV+G+G + L Sbjct: 68 ARARGHATQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERL 127 Query: 120 SQKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V+ +E L+ +L+R V + + LK A S D + + S IT Sbjct: 128 RAAGVEVEVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAA 187 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ VH RA++ A+L G+GTVLADDP L R E P +LD H + D+ +++ Sbjct: 188 ARADVHAWRARACAVLTGVGTVLADDPRLDVR-EVPTERQPWVAVLDSHLRTPPDAALLR 246 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEG 294 A V+I D A I++ D L+ ++ L R + VE Sbjct: 247 -AQARDVVIYCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEA 305 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGG--IP-SPLEEGYLEKNFMCVRRDYFGSDVC 351 GA + + + LVD ++LY + ++G+G P PL + G D+ Sbjct: 306 GAIASGALCAAGLVDEVLLYLAPKLLGQGRGIAPFGPLPDLGQALGLTIRSVAQVGPDLR 365 Query: 352 L 352 + Sbjct: 366 V 366 >gi|317474402|ref|ZP_07933676.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii 1_2_48FAA] gi|316909083|gb|EFV30763.1| riboflavin biosynthesis protein RibD [Bacteroides eggerthii 1_2_48FAA] Length = 347 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 173/348 (49%), Gaps = 20/348 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E Sbjct: 4 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182 ++ ++E + K + ++T R +ITLK A S D I V ++ ++ Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ AI+VG T D+P LT R Q SP+RI++D +LS + ++ Sbjct: 184 VHKRRAEHSAIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHLFDDSIR 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ T AF +I L +++ L +G+ SLLVEGG+ + SF Sbjct: 242 --TLVFTGQPHA----AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSF 295 Query: 303 INSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 IN+ L D I + S + G+ +P + V YFG + Sbjct: 296 INAELWDEIFVEESPLKLF--SGVKAPEIGNKIP----YVNEQYFGRN 337 >gi|15924761|ref|NP_372295.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|15927345|ref|NP_374878.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus N315] gi|148268246|ref|YP_001247189.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH9] gi|150394314|ref|YP_001316989.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH1] gi|156980087|ref|YP_001442346.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu3] gi|253315858|ref|ZP_04839071.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|255006556|ref|ZP_05145157.2| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794151|ref|ZP_05643130.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781] gi|258420684|ref|ZP_05683623.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719] gi|258438334|ref|ZP_05689618.1| riboflavin specific deaminase [Staphylococcus aureus A9299] gi|258443792|ref|ZP_05692131.1| riboflavin specific deaminase [Staphylococcus aureus A8115] gi|258446003|ref|ZP_05694179.1| riboflavin specific deaminase [Staphylococcus aureus A6300] gi|258448269|ref|ZP_05696396.1| riboflavin specific deaminase [Staphylococcus aureus A6224] gi|258454203|ref|ZP_05702174.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937] gi|282893262|ref|ZP_06301496.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117] gi|282927897|ref|ZP_06335508.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102] gi|295406080|ref|ZP_06815888.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819] gi|296276038|ref|ZP_06858545.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus MR1] gi|297244995|ref|ZP_06928872.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796] gi|13701564|dbj|BAB42857.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus N315] gi|14247543|dbj|BAB57933.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu50] gi|147741315|gb|ABQ49613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus aureus subsp. aureus JH9] gi|149946766|gb|ABR52702.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus JH1] gi|156722222|dbj|BAF78639.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus Mu3] gi|257788123|gb|EEV26463.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9781] gi|257843288|gb|EEV67698.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9719] gi|257848378|gb|EEV72369.1| riboflavin specific deaminase [Staphylococcus aureus A9299] gi|257851198|gb|EEV75141.1| riboflavin specific deaminase [Staphylococcus aureus A8115] gi|257855245|gb|EEV78184.1| riboflavin specific deaminase [Staphylococcus aureus A6300] gi|257858508|gb|EEV81384.1| riboflavin specific deaminase [Staphylococcus aureus A6224] gi|257863655|gb|EEV86412.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A5937] gi|282590407|gb|EFB95486.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A10102] gi|282764580|gb|EFC04706.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8117] gi|285817450|gb|ADC37937.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus aureus 04-02981] gi|294969077|gb|EFG45098.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8819] gi|297178075|gb|EFH37323.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A8796] gi|315130592|gb|EFT86578.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus CGS03] gi|329727599|gb|EGG64055.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21172] Length = 347 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 167/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|119502840|ref|ZP_01624925.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2080] gi|119461186|gb|EAW42276.1| Riboflavin biosynthesis protein RibD [marine gamma proteobacterium HTCC2080] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 117/356 (32%), Positives = 178/356 (50%), Gaps = 19/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R + NP V C+IV D ++G+G T G HAE+ AL A +GA Sbjct: 1 MEQALAEARKGRFWATPNPHVGCVIVSDNKILGKGFTQPVGGAHAEIMAL-GACASPQGA 59 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H GR+ PC + +I GI RVV ++DP+ VSG+G L GI + + Sbjct: 60 TAYVTLEPCAHQGRTGPCVEALISAGIGRVVGALEDPNPSVSGKGYDRLRAAGIAVTQGV 119 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ L +L R + LK+A S D MA S ITG +++ V RA Sbjct: 120 YSEAARVELAGFLLRMERGWGRVRLKLACSLDGRTAMASGESQWITGALARQDVQRQRAA 179 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ----------EHSPMRIILDPHFKLSLDSKIIKT 239 S I+ GIGTVLADD LT R + L P R++LD + + +++++ + Sbjct: 180 SSVIITGIGTVLADDCSLTVRSDELGLRGEELTRALHRPPTRVVLDSNARTPGEARVLSS 239 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP ++VT N+ V A A K + DL +L L +G +L+E G ++A Sbjct: 240 N--APTLVVTANEKQVPAGALHKT--APVTEAGLDLGDVLESLGSQGANEILIESGPSLA 295 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +F+ + LVD +++Y++ +++G P E GSD+ + Sbjct: 296 AAFLKADLVDELLIYQAPVLLGSSARPLADLAFSELKDGIQLAYQELSPLGSDLRI 351 >gi|295698401|ref|YP_003603056.1| riboflavin biosynthesis protein RibD [Candidatus Riesia pediculicola USDA] gi|291157057|gb|ADD79502.1| riboflavin biosynthesis protein RibD [Candidatus Riesia pediculicola USDA] Length = 373 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 103/373 (27%), Positives = 180/373 (48%), Gaps = 18/373 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +FMS A+ ++ TS NP+V C+IV++ ++G + G HAEV A+++ Sbjct: 1 MNDKDRQFMSRAIFLAKKGKFTTSPNPNVGCVIVQNNRIVGESYHSKTGESHAEVLAMKK 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG +GAT YVTLEPC+HYG +PPC +I I ++ V + DP+ +VSG+ L L + Sbjct: 61 AGHFLKGATVYVTLEPCNHYGLTPPCVDELINAKISKIFVSMTDPNPKVSGKSLIKLKKS 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISK 180 G+ ++ +++ E + ++ R + +IT+K+A S ++ I + + I+ + S+ Sbjct: 121 GVQVISGLLKDESEKINLGFIKRMKQGLPYITIKMATSINSKVIPINFEKNKWISSYKSR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V +RAQS A+L T+++DD L R N + P+RI++D K Sbjct: 181 QDVQEIRAQSSAVLTTGSTIVSDDSRLNVRWNDFSDELKNIYPEKEIRQPVRIVIDTKNK 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + + KI+ T + ++ ++ + + DL + + R + S Sbjct: 241 VHENHKIVNTPGEC-WLFRSQFSKKRWKKNVKEFSTKLDSEGRIDLIYTMKQIARRKINS 299 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345 +L+E G A S ++ L D IILY + G + E N V+ Sbjct: 300 ILIESGPTFASSLLSLNLFDQIILYIAPKFFGSQSKELIIISKESEINNISKLRFVQVKK 359 Query: 346 FGSDVCLEYIGKN 358 G DV + K Sbjct: 360 IGKDVRVILKKKE 372 >gi|255038066|ref|YP_003088687.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM 18053] gi|254950822|gb|ACT95522.1| riboflavin biosynthesis protein RibD [Dyadobacter fermentans DSM 18053] Length = 354 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 187/363 (51%), Gaps = 26/363 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++M AL+ + + G S NP V C+IV DG +IG G G PHAEV+A+E+ Sbjct: 2 ETDNQWMERALQLAGYGRGAVSPNPMVGCVIVHDGRIIGEGWHRAYGGPHAEVRAIED-- 59 Query: 65 EEARG-------ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +ARG ATAYVTLEPCSH G++PPCA ++ ++RVV+C +DP+ VSGRG++ Sbjct: 60 TDARGNSHLLPQATAYVTLEPCSHTGKTPPCADLLVSRRLKRVVICNNDPNPLVSGRGIR 119 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L + GI + + E+ G + T +R ++ LK A + D +G + I+G Sbjct: 120 RLREAGIEVECGVAEAAGTELNKRFFTAMTLQRPYVILKWAETADGFLGYQAGSPLQISG 179 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 +S +VH R + DAI+VG T L D+P L R +P+RI+ D H +L + Sbjct: 180 TLSNMRVHQWRTEEDAIMVGYKTALMDNPRLNVR--HWAGRNPVRIVTDRHLQLPPQLHL 237 Query: 237 IKTALLAPVIIVT---ENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLL 291 + ++V+ E D P + + + + ++ ++L L R V SLL Sbjct: 238 FDQSQS--TVVVSYDLETDIPSDPERYLAPTTAYMKIEPKVEEILQILQGLHRRKVQSLL 295 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 VEGGAAV ++F L D I + I IG G+ +P +G + + G D+ Sbjct: 296 VEGGAAVINAFFECGLWDEIRRCQGGITIG-NGVAAPAPKGIFRGS------ERVGDDLW 348 Query: 352 LEY 354 Y Sbjct: 349 TFY 351 >gi|282927316|ref|ZP_06334937.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765] gi|282592080|gb|EFB97105.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus A9765] Length = 347 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 167/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKKPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|302751598|gb|ADL65775.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 343 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 114/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V +IVK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVIVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana] gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Length = 599 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 169/369 (45%), Gaps = 19/369 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA F+ A S GLTS +P+ C+I G V G G G AE A+E A Sbjct: 30 TTDAAFIRRAADLSEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 89 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE +RGATAY+ +EP +G + +++ GI RVVV + P + G ++ L G Sbjct: 90 GEFSRGATAYLNMEPGDCHGDHTAVS-ALVQAGIERVVVGIRHPLQHLRGSAIRELRSHG 148 Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 I V+ + E + + R + LK A++ D I + + Sbjct: 149 IEVNVLGEDFESKVLEDARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 208 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L Sbjct: 209 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 266 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + + ++ +++ K + ++ D + ++++ RG S+L Sbjct: 267 KANLWDVSEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 326 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A S I+S ++ ++ + + +IG PSP+ + + + + DVC Sbjct: 327 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 382 Query: 353 EYIGKNLCL 361 E +G ++ + Sbjct: 383 EQVGPDMLV 391 >gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella avium 197N] gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bordetella avium 197N] Length = 371 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 175/366 (47%), Gaps = 17/366 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEA 67 M AL +R + T+ NP V C+IV+DG ++G G T G HAEV AL AG + Sbjct: 1 MQRALGLAREVLYTTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ RVSG+G L G+ + Sbjct: 61 AGATVYVTLEPCSHFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVS 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E ++ R + LK+A S D + S ITG ++ H Sbjct: 121 SGVCEEEALALNPGFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAW 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++D +L G+GT++ DDP+L R P R ++D F++ D+++ PV Sbjct: 181 RARADLVLTGLGTIVHDDPQLNVR-AVSTPRQPRRGVVDGQFRVPEDARLFDGE---PVW 236 Query: 247 IVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T D A +N+ ++ DL ++ L + VE GA ++ + Sbjct: 237 VFTARQDHAKAERLASRNVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGA 296 Query: 302 FINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + + VD +++Y + +++G+ + P LE + + G DV L+ Sbjct: 297 LLAADCVDELLVYLAPVLLGDAAGMVRLPVLERLDAARRYAFTDLVRVGEDVRLQ-ARDP 355 Query: 359 LCLQEL 364 Q L Sbjct: 356 ARWQAL 361 >gi|313203842|ref|YP_004042499.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-aminO-6-(5-phosphoribosylamino)uracil reductase [Paludibacter propionicigenes WB4] gi|312443158|gb|ADQ79514.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paludibacter propionicigenes WB4] Length = 360 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 166/329 (50%), Gaps = 16/329 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 +M L+ + VG + NP V ++V + +IG G G HAE A+ E Sbjct: 20 ELYMHRCLQLAELGVGYVAPNPMVGAVLVCNDKIIGEGYHHRYGEAHAEPNAINSVKEVE 79 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YV+LEPCSHYG++PPCA I+ GI RVV+ DP+ +V+G+G+ L G+ Sbjct: 80 LLGQSTLYVSLEPCSHYGKTPPCADLIVSSGIPRVVIGTLDPNPKVAGKGVAKLRNAGVE 139 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG----SVPITGFISK 180 ++ ++E E + + Q ++R ++ LK A ++D + + I+ I++ Sbjct: 140 VIVGVLEEECRELNKRFFIFQEQRRPYVLLKWAQTRDGFMDRVRTDVSEPPLQISNNITR 199 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H +RA++ +ILVG TVL D+P LT R SP+RI +D ++ + ++ + Sbjct: 200 QLTHKMRAENQSILVGANTVLLDNPSLTVR--NWSGRSPVRIAIDRQRRIPDNFNLLDGS 257 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 L I+ TE D K I D ++ +LT L R + S+LVEGG + + Sbjct: 258 LQ--TIVFTEKDVENRPRIEFVK----INFDSNSVETILTELYKRNIHSVLVEGGPTILN 311 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPL 329 SFI++ D + + + I G+ +P Sbjct: 312 SFIDAGCWDEANIEIAPVRI-NEGVAAPF 339 >gi|299138351|ref|ZP_07031530.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8] gi|298599597|gb|EFI55756.1| riboflavin biosynthesis protein RibD [Acidobacterium sp. MP5ACTX8] Length = 387 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 121/343 (35%), Positives = 180/343 (52%), Gaps = 17/343 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D R + AL ++ VGL S NP+V C++V+DG+V+G G Y HAE+ AL Sbjct: 1 MSLLPHDERHLQRALDLAQEAVGLASPNPTVGCVLVRDGVVLGEGAHHYDERDHAEIAAL 60 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 ++A G +GATAYVTLEPCSH GR+ PCA +I GI R VV DP+ VSG GL Sbjct: 61 KQAASLGHTPQGATAYVTLEPCSHQGRTGPCADALIAAGIARCVVATVDPNPLVSGGGLA 120 Query: 118 WLSQKGIIVDRMMES-----EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---- 168 L GI V + + A+ +R +TLK AVS D + A Sbjct: 121 KLQAAGIEVVVADPASALAQRTRRLNDAFAHWIQHRRPFVTLKAAVSVDGKLAPAPSVRT 180 Query: 169 -CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227 +TG ++ VH LR + DAIL GIGTVLADDP LT R + S +R++LD Sbjct: 181 ANQPHWLTGEAARADVHRLRHEVDAILTGIGTVLADDPSLTDRSGLPRRRSLLRVVLDSD 240 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILV 283 + L+S+++++A +++ + A + ++ +L+ L L Sbjct: 241 LRTPLNSQLVRSAGSDLLLLCSRTAPADREAALSDCGVEVLRLSGSGGHLNLRAALDTLA 300 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 R + S+L+EGG+++ S ++ LVD + LY ++ +G IP Sbjct: 301 QRNIISVLIEGGSSLNGSLLHEGLVDKLTLYYAECELGLDAIP 343 >gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Length = 579 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 97/369 (26%), Positives = 170/369 (46%), Gaps = 19/369 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA F+ A + GLTS +P+ C+I G V G G G AE A+E A Sbjct: 29 AIDAAFIRRAADLAEMSAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAA 88 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE +RG+TAY+ +EP +G + +++ GI RVVV + P + G ++ L +G Sbjct: 89 GEFSRGSTAYLNMEPGDCHGDHTAVS-ALVQAGIDRVVVGIRHPLQHLRGSAIRELRSQG 147 Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 I V+ + E + + R + LK A++ D I + + Sbjct: 148 IEVNVLGEDFESKVLEEARKSCLLVNAPLIHRACSRVPFSVLKYAMTLDGKIAASSGHAA 207 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ +S+ +V LR SDA++VG TV DDP LT R Q H+P RI++ L Sbjct: 208 WISSKLSRTRVFELRGGSDAVIVGGNTVRQDDPRLTAR--HGQGHTPTRIVMTQSLDLPE 265 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + A ++ +++ K + ++ D + ++++ RG S+L Sbjct: 266 KANLWDVAEVSTIVVTQRGARKSFQKFLASKGVEVVEFDMLNPREVMEYFHLRGYLSILW 325 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A S I+S ++ ++ + + +IG PSP+ + + + + DVC Sbjct: 326 ECGGTLAASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLI----DVCY 381 Query: 353 EYIGKNLCL 361 E +G ++ + Sbjct: 382 EQVGPDMLV 390 >gi|222528581|ref|YP_002572463.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii DSM 6725] gi|222455428|gb|ACM59690.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor bescii DSM 6725] Length = 371 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 164/344 (47%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKKASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YVTLEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 68 LLKNATMYVTLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ +++ E + + +I +K+A S D I VH Sbjct: 128 VIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTEEENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + AILV + TV++D+P L R G P R++LD ++ L+ I+KTA Sbjct: 188 SLRQKYMAILVSVNTVISDNPILNARY-GQIVRQPTRVVLDSKLRIPLECNIVKTADKYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ DL + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDIQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + + R+ D + IG + E F + Sbjct: 307 LNFFLLKQRIADYWYSLIFNVFIGGQDTKGVVGAEGFEDFFPKL 350 >gi|284033021|ref|YP_003382952.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836] gi|283812314|gb|ADB34153.1| riboflavin biosynthesis protein RibD [Kribbella flavida DSM 17836] Length = 344 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 111/361 (30%), Positives = 161/361 (44%), Gaps = 31/361 (8%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60 S D +M A+ + +G T NP V C+I +DG G G A G PHAEV AL Sbjct: 3 NASPIDVAWMRRAIELAARGLGSTHPNPVVGCVITGRDGHPAGEGFHAVAGGPHAEVAAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARG TAYVTLEPC+H GR+ PCA +IE G+ RV+ V DP+ + +G + S Sbjct: 63 RMAGDRARGGTAYVTLEPCNHTGRTGPCADALIEAGVARVLYAVPDPNRQAAGGADKLRS 122 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + + ++ +E + H +L R +T K A + D S ITG ++ Sbjct: 123 KNVHVEQGLLRAEAEAVNHVWLHSVRMGRPFVTWKFATTLDGRSAAPDRSSRWITGEQAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIK 238 VH RA+ DAI VG TVL DDPELT R + P+R+++ ++ +++ Sbjct: 183 ADVHRQRAECDAIAVGTQTVLTDDPELTVRDAQDRPVGRQPLRVVV-GDREIPATARV-- 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 R + D ++L L + L +EGG + Sbjct: 240 ----------------------RNDRAETLLLPTHDPAEVLRQLDDHHIRHLWLEGGPTL 277 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEYI 355 A +F+ S LVD I+ Y + V+G G + F G DV L Sbjct: 278 AAAFLRSGLVDQIVAYVAPAVLGSGFAAIGDLGAESIDHLRRFQLADVTRLGDDVRLTLT 337 Query: 356 G 356 Sbjct: 338 P 338 >gi|15805190|ref|NP_293877.1| riboflavin-specific deaminase [Deinococcus radiodurans R1] gi|6457821|gb|AAF09742.1|AE001878_1 riboflavin-specific deaminase [Deinococcus radiodurans R1] Length = 357 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 183/353 (51%), Gaps = 16/353 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIV----IGRGVTAYGGCPHAEVQALEE 62 DA +M AL + +G TS NP V C+IV+DG + +GRG G PHAEV AL E Sbjct: 8 DAEYMQLALNEAAKGLGRTSPNPPVGCVIVRDGEIASEIVGRGFHPKAGEPHAEVFALRE 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ +V+GRGL+ L Sbjct: 68 AGERARGATAYVTLEPCSHDGRTPPCADALIAAGVARVVVAAGDPNPQVNGRGLEKLRAA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E+ + + R H+ K A++ D + G+ P++G ++ Sbjct: 128 GIEVATGVLEAAAVRQQAGFRSLVTRGRPHVIYKYAMTLDGKVAALNEGNGPVSGPEARA 187 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V R + DA+ VG T L D+P+L R P ++ DP L ++ ++ Sbjct: 188 RVMAWRNEVDAVAVGARTALLDNPQLNVRGLDG-GRDPRAVLFDPEGHLPASARAVREG- 245 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 V+++ E L R + L+ L L G GV +LL+EGG +A + Sbjct: 246 --TVLVLREGRSTPLERDPR-----VTVLHAHSLQGALEQLAGLGVATLLLEGGPTLASA 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352 F + L+D + ++ + ++G G P +P+ + R + G+DV + Sbjct: 299 FFEAGLIDELRVFVAPKLLGAGLSPLLAPVRSMHAATELAVERVEVVGNDVLV 351 >gi|319900207|ref|YP_004159935.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides helcogenes P 36-108] gi|319415238|gb|ADV42349.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacteroides helcogenes P 36-108] Length = 347 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 18/332 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + T+ NP V +IV DG +IG G + G HAEV A+ + Sbjct: 3 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHVHCGEAHAEVNAIRSVKDPS 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + AT YV+LEPCSHYG++PPCA IIE I R+++ DP +V+GRG+Q L G Sbjct: 63 LLQRATIYVSLEPCSHYGKTPPCADLIIEKQIPRIIIGCMDPFSKVAGRGIQKLKDAGRE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA--GCGSVPITGFISKNQ 182 ++ ++E E K + ++T +R +ITLK A S D I V ++ + Sbjct: 123 VIVGVLEEECKSLIRRFVTFHTLRRPYITLKWAESADGYIDSYRTNGNPVVLSSPFTSML 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R + AI+VG T D+P L R H P+RI+LD L D + L Sbjct: 183 VHKQRTEHSAIMVGTHTAKLDNPRLNVR--HWYGHPPVRIVLDKDRALPTDLHLFDGDTL 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ TE +L N+ + + + L +++ L RG+ SLLVEGG+ + Sbjct: 241 --TLVFTETPHDLLP------NVEYLPINYQQDILPQIMEELYTRGLQSLLVEGGSILLQ 292 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 SFI++ + D I + + I++ G+ +P G Sbjct: 293 SFIDTGIWDEIFVEEAPILL-HSGVKAPEISG 323 >gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera] Length = 587 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 18/368 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D+ + A + G TS +P+ C+I G V+G G G AEVQA+E AG Sbjct: 22 ALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATAGKVVGEGYLYAQGTKPAEVQAVEAAG 81 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E RGATAY+ +EP +G + +++ GI R VV + P + L+ + +G+ Sbjct: 82 ELCRGATAYLNMEPGDCHGDRTAVS-ALVKAGITRXVVGIRHPLQHLRSHALRAMRSEGL 140 Query: 125 IVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 VD + E I + R + LK A++ D I + + Sbjct: 141 QVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAMTLDGKIAASSGHASW 200 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 I+ S+ +V LR +SDAI+VG TV D+P+LT R G H P+RI++ L Sbjct: 201 ISSKESRYRVFELRGRSDAIVVGGNTVRKDNPQLTARHGG--GHVPIRIVMSRTLNLPEV 258 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + + + + +++ K + ++ D + + ++ RG S+L E Sbjct: 259 ANLWDVSSVPTIVVTQRXARKSFQKFLASKGVEVVEFDILNTRDVMEYFYDRGYLSILWE 318 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 G +A S I+S ++ + + + +IG P+P+ E + + + D E Sbjct: 319 CGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTPVGELGMVEMTQALDLI----DFSYE 374 Query: 354 YIGKNLCL 361 IG ++ + Sbjct: 375 QIGPDMLI 382 >gi|311745056|ref|ZP_07718841.1| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1] gi|311302325|gb|EAZ81787.2| riboflavin biosynthesis protein RibD [Algoriphagus sp. PR1] Length = 340 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 15/337 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 +M AL + G S NP V C+IVK+ +IG G G HAEV A+ ++ Sbjct: 6 YMRRALELAELGRGKVSPNPVVGCVIVKEDKIIGEGYHQKYGEAHAEVNAVNSVEDQTDI 65 Query: 69 -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G+T YVTLEPC+H+G++PPCA +++ + +VV+ D + V G+G+Q L + GI + Sbjct: 66 VGSTVYVTLEPCAHFGKTPPCANLLVDKKVGKVVIAAFDSNPLVGGKGIQILEEAGIEVE 125 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ E + + T+ +KR ++ LK A +QD + + S I+ S+ VH Sbjct: 126 TGLLQEEARWQNRRFFTQIEKKRPYVILKWAQTQDGFVARSDYSSKWISNSSSRRLVHQW 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAI+VG T DDP L R +P+R+++D +LS K+ A P I Sbjct: 186 RAEEDAIMVGKNTAKYDDPALNVR--DWVGKNPLRLVIDSKLELSQSLKLFDQA--VPTI 241 Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 N+ + L ++L L R + SLLVEGG+ + + FI Sbjct: 242 CYNT------QKTEESGNLEFVKLKPGFSLDQILEDLHNRNIQSLLVEGGSFLLNKFIEL 295 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR 342 L D ++ S+ GE GI +PL +N + Sbjct: 296 GLWDEARIFTSRNKFGE-GIKAPLIPKPSSENIPVLE 331 >gi|323439574|gb|EGA97294.1| riboflavin specific deaminase [Staphylococcus aureus O11] gi|323442021|gb|EGA99657.1| riboflavin specific deaminase [Staphylococcus aureus O46] Length = 343 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 113/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRDHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|146295833|ref|YP_001179604.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409409|gb|ABP66413.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 371 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M AL ++ L NP V +IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMHIALELAKKASPLVLPNPRVGSVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGH 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YV+LEPC H+G+ PPC II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 68 SLKNSTMYVSLEPCCHFGKQPPCTDAIIKSGIKKVVVATKDPNPLVNGKGIQILKQHGIK 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ ++E E + + +I +K+A S D I VH Sbjct: 128 VVEGILEKEAESVNKEFFKYMKTGIPYIAIKVAQSIDGKIAKPSGERFIFNTEDENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A +V + TV++D+P L R G P+R++LD ++ L+S I+KT+ Sbjct: 188 SLRQKYMATMVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLESNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 V +D +K I II+ DL L+ L + + S+LVEGG+ Sbjct: 247 TYTVCSENVNDTQKIEFLSQKGIKIIFAKSSEDGHLDLLDALSKLAQQKIVSVLVEGGSF 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + E+ F + Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQNTKGVVGAEGFEQFFPKL 350 >gi|49484015|ref|YP_041239.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257425881|ref|ZP_05602305.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 55/2053] gi|257428548|ref|ZP_05604946.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 65-1322] gi|257431182|ref|ZP_05607559.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus 68-397] gi|257433863|ref|ZP_05610221.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus E1410] gi|257436780|ref|ZP_05612824.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M876] gi|282904343|ref|ZP_06312231.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C160] gi|282906168|ref|ZP_06314023.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus Btn1260] gi|282909085|ref|ZP_06316903.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911393|ref|ZP_06319195.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WBG10049] gi|282914562|ref|ZP_06322348.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M899] gi|282919530|ref|ZP_06327265.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C427] gi|282924908|ref|ZP_06332574.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C101] gi|283958523|ref|ZP_06375974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus A017934/97] gi|293503640|ref|ZP_06667487.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 58-424] gi|293510656|ref|ZP_06669361.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M809] gi|293537197|ref|ZP_06671877.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M1015] gi|295428344|ref|ZP_06820973.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus EMRSA16] gi|297590692|ref|ZP_06949330.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MN8] gi|49242144|emb|CAG40844.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus MRSA252] gi|257271575|gb|EEV03721.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 55/2053] gi|257275389|gb|EEV06876.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 65-1322] gi|257278130|gb|EEV08778.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281956|gb|EEV12093.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus E1410] gi|257284131|gb|EEV14254.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M876] gi|282313274|gb|EFB43670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C101] gi|282317340|gb|EFB47714.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C427] gi|282321743|gb|EFB52068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M899] gi|282325088|gb|EFB55398.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WBG10049] gi|282327349|gb|EFB57644.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331460|gb|EFB60974.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus Btn1260] gi|282595961|gb|EFC00925.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus C160] gi|283790672|gb|EFC29489.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus A017934/97] gi|290920042|gb|EFD97110.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M1015] gi|291095306|gb|EFE25571.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 58-424] gi|291466547|gb|EFF09068.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus M809] gi|295127744|gb|EFG57381.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus EMRSA16] gi|297575578|gb|EFH94294.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MN8] gi|312437774|gb|ADQ76845.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus TCH60] gi|315195682|gb|EFU26069.1| bifunctional riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus CGS00] Length = 347 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 168/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + + GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETIRDHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRHTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DKFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|332157888|ref|YP_004423167.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2] gi|331033351|gb|AEC51163.1| Riboflavin biosynthesis protein ribD (ribD) [Pyrococcus sp. NA2] Length = 349 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 119/364 (32%), Positives = 182/364 (50%), Gaps = 25/364 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D ++M AL +R G + NP V +IVK+G VIG+G Y G HAEV A+E+A Sbjct: 4 DEKYMKLALELARLGEGRVNPNPMVGAVIVKNGKVIGKGHHEYFGGKHAEVNAIEDAKRN 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G RGAT YVTLEPC+H+G+ PPC II+ GI RVVV DP+ V+G G++ L + G Sbjct: 64 GYSVRGATMYVTLEPCAHWGKQPPCVDRIIKEGISRVVVATLDPNPMVNGEGVKRLMEAG 123 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + +++ E + Y + +K+A++ D I S IT ++ + Sbjct: 124 IEVEVGILKEEAEKLNEIYFKYIKTSMPFVAIKLALTLDGFIATKSFSSKWITNEKARLK 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V +R + AI+VG TV D+P L CR+NG ++ +++ILD H + + K + Sbjct: 184 VQEIRRRFMAIMVGANTVTIDNPRLNCRVNGCRDK--VKVILDRHG-TTANRKDLNVFKE 240 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 VI+ TE+D K N K++L IL G+ S+L+EGG +A F Sbjct: 241 GKVIVFTESD---------KSWDNAKVIKETSPKRILEILGKMGIDSVLIEGG-RIACQF 290 Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 + D + L+ +IG G P +++ L + + FG +E Sbjct: 291 L--PFADKLYLFYGNKLIGNGISPFECLEVDDVNLALKVELLNIETFGDSYLVEARP--- 345 Query: 360 CLQE 363 C +E Sbjct: 346 CSRE 349 >gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN] gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN] Length = 368 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 166/351 (47%), Gaps = 11/351 (3%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 ALR + + +++ NP V C++V DG ++G+G T G PHAEV AL +A G + Sbjct: 9 REALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDV 68 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGATAYVTLEPC+H GR+ PC+ +I GI RVV ++DP+ V+G+G L G+ + Sbjct: 69 RGATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVE 128 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 E + + +R V + K A S D ++ S IT ++ H Sbjct: 129 VGPGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAW 188 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ A+L GIGTVL D+P L R P +++D + D+ + + Sbjct: 189 RARACAVLTGIGTVLDDNPRLDVRALQ-TPRQPHVVVVDSQLQTPPDAHLFIAERACYIY 247 Query: 247 IVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +ND AL R + + DL +L L RG+ L VE G + S + Sbjct: 248 TAVQNDVKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLLR 307 Query: 305 SRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 LVD +++Y + ++G G P + + G+D+ + Sbjct: 308 EGLVDEMLVYLAPTLLGPGLSIANIGPFDNLAQGVAMDFTSVERVGADIRI 358 >gi|294083733|ref|YP_003550490.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum marinum IMCC1322] gi|292663305|gb|ADE38406.1| bifunctional deaminase-reductase [Candidatus Puniceispirillum marinum IMCC1322] Length = 366 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 192/360 (53%), Gaps = 18/360 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ +R VG + NP V C+I G +IG G TA G PHAE AL AG+ A G Sbjct: 1 MRYAISEARKAVGRAAENPPVGCVIIAASGQLIGAGHTARTGRPHAETVALAMAGQRAHG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPC+H+G++PPCA +IE GIRRVV+ DPD RV+G+G+ L GI ++ Sbjct: 61 GTAYVTLEPCAHHGQTPPCATALIEAGIRRVVIACQDPDRRVNGKGVTMLRAAGIDVITD 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + +L R V KR +T+K A S D I + V +T + VH+LR+ Sbjct: 121 IGSDMAYSVMQGFLHRMVHKRPLVTIKTATSLDGGIALGDGRKVWLTSPPMRRYVHVLRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +SDAIL GIGT+LADDPE+TCRL GL+ SP R ILD + +KI++ P +I Sbjct: 181 KSDAILTGIGTILADDPEMTCRLPGLEHDSPSRFILDSQLRCPPGAKILQNNNAVPTVIF 240 Query: 249 T-ENDDPVLALAFRKKNINIIYC-----------DCRDLKKLLTILVGRGVTSLLVEGGA 296 E P +A K I+ DL+K+L L GV +LLVE G+ Sbjct: 241 CAETASPDARIALEKSGAVIVPMAVDKAQDDGLQKRLDLQKILRYLGDAGVNNLLVEAGS 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCL 352 ++ S I LVD I +SQ ++G IP SPL+ L + + G D Sbjct: 301 SIVTSIIADDLVDVIHWTQSQHLLGSDAIPAISPLKLVALPEQTRYTETHHQQIGRDRLT 360 >gi|320139809|gb|EFW31673.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus MRSA131] Length = 343 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 113/352 (32%), Positives = 166/352 (47%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|302871184|ref|YP_003839820.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor obsidiansis OB47] gi|302574043|gb|ADL41834.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor obsidiansis OB47] Length = 371 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 104/359 (28%), Positives = 175/359 (48%), Gaps = 15/359 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGN 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YV+LEPC H+G+ PPC + II+ GI++V++ DP+ V+G+G+Q L Q GI Sbjct: 68 SLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVIIATRDPNPLVNGKGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E + + + +I +K+A S D I VH Sbjct: 128 VVEGVLQKEAESVNKEFFKYMKKGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R + P+R+++D + ++ L+ I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNVRYGEI-IRQPIRVVIDTNLRIPLECNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ +L + + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIKLLSQKGIKIIFAKQSEDGHLELSDVFSKLAQQKIISVLVEGGSM 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLE 353 + S + R+ D + IG + E+ F + + F + +E Sbjct: 307 LNFSLLKKRIADYWYSLIFNVFIGGQNTKGVVGAEGFEEFFPKLVNPKVTIFKNSTIIE 365 >gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiobacillus denitrificans ATCC 25259] gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD diaminohydroxyphosphoribosylaminopyrimid ine deaminase + 5-amino-6-(5- phosphoribosylamino)uracil reductase oxidoreductase protein [Thiobacillus denitrificans ATCC 25259] Length = 359 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 125/365 (34%), Positives = 191/365 (52%), Gaps = 16/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D+RFMS AL+ + + TS NP V C++VKD ++G G G PHAE+ AL Sbjct: 1 MRFTAADSRFMSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGATAYVTLEPCSH+GR+PPCA+ +I+ G+ RVV + DP+ V+G G+ L+ Sbjct: 61 RAAGEAARGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLT 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI + +ME+E + +++R +R + LK A + D +A S ITG + Sbjct: 121 LAGIAAEVGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + V LRA++ AIL G GTVLADDP + R + +P+R+++D + + I+ Sbjct: 181 RADVQRLRARACAILTGSGTVLADDPRMNVRDFDI-GRAPLRVVVDSTLRTPASAAIL-- 237 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLVEGG 295 P ++ + P A +I D + LL +L RGV + VE G Sbjct: 238 ----PALVACRDASPATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAG 293 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVC 351 AA+ + + + LVD + Y + + +G+ +PL F G D+ Sbjct: 294 AALNGALLAAGLVDEWVAYLAPLAVGDDARGLFAHAPLATLAEAARFRLQDLRQIGGDLR 353 Query: 352 LEYIG 356 L + Sbjct: 354 LTLLP 358 >gi|326562323|gb|EGE12649.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 103P14B1] gi|326575527|gb|EGE25452.1| riboflavin biosynthesis protein RibD [Moraxella catarrhalis 101P30B1] Length = 350 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 175/364 (48%), Gaps = 41/364 (11%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ + T NP+V C++VKD +VIG+G G PHAE+ AL +A Sbjct: 9 QDIYYMQLAIAEAKKGIYTTRPNPAVGCVLVKDSLVIGQGYHPKAGQPHAEIFALADAKA 68 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + +GATAYVTLEPCSH GR+PPCA +I +RRVVV DP+ +V+G G++ L Sbjct: 69 RGFDTKGATAYVTLEPCSHTGRTPPCADALIAANLRRVVVASLDPNPKVAGNGIKKLQNA 128 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI ++ + + + +L ++ LK A S D A S ITG ++ Sbjct: 129 GIEVLVGVCDQQAAALNLGFLKAMRTGLPYVRLKTASSLDGRTATASGESKWITGIEARE 188 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----HSPMRIILDPHFKLS--LDS 234 V LRA+S AI+ G GT++AD+P LT R L P +I+D +LS D Sbjct: 189 DVQRLRAKSAAIVTGSGTIIADNPALTVRSKQLGVDLHMLPKPKVVIVDRRNRLSDLDDY 248 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVE 293 +++ DL LL L +L+E Sbjct: 249 QVLNRDDTLIW--------------------------RNDLMSLLKTLVSQYACYDVLIE 282 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDV 350 G+ ++ +FI LVD +I+Y++ ++G+ P L+ + F D G+D+ Sbjct: 283 AGSELSGTFITEGLVDELIVYQAPCILGQDARPMFACQLDHLAKQYRFGLHSADIIGNDI 342 Query: 351 CLEY 354 L Y Sbjct: 343 RLIY 346 >gi|312887826|ref|ZP_07747413.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM 18603] gi|311299645|gb|EFQ76727.1| riboflavin biosynthesis protein RibD [Mucilaginibacter paludis DSM 18603] Length = 343 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 167/351 (47%), Gaps = 26/351 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-------A 63 M L ++ +G S NP V +IV G +IG G G HAEV A+ A Sbjct: 1 MLRCLELAKLGLGSVSPNPMVGAVIVHQGRIIGEGYHQRYGEAHAEVNAVNNVINRFDDA 60 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + + YV+LEPC+HYG++PPCA II+ I VVV DP +V+G+G++ L G Sbjct: 61 AQLLSESVIYVSLEPCAHYGKTPPCADLIIKHQIPEVVVGCRDPFDQVNGKGIEKLQAAG 120 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++E E + TR ++ R +I LK A ++D A + ITG S+ Sbjct: 121 VKVTVGVLEKECLDLNKRFFTRILKHRPYIILKWAQTEDCFFAPADQSQLWITGEESRKL 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R + DAILVG T D+P+L R SP RI++D +LS + + + Sbjct: 181 VHQWRGEEDAILVGKNTAAIDNPQLNVRYG--PGKSPKRIVIDRRLELSKELYLFDQTVE 238 Query: 243 APVI--IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + TE D V ++ N + + +L L + + S+++EGGA Sbjct: 239 TFVFNEVKTEFDGKVKYISLEDFNYYV-------PQYILYQLYLQDIQSVIIEGGATTLA 291 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 FI L D ++ I + + GI +P +G + V D G+DV Sbjct: 292 HFIKDGLWDEARIFTGAITL-KKGIQAPQIKGDV------VSEDRVGNDVL 335 >gi|288957859|ref|YP_003448200.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp. B510] gi|288910167|dbj|BAI71656.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azospirillum sp. B510] Length = 376 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 152/370 (41%), Positives = 201/370 (54%), Gaps = 14/370 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P D R M AAL + +G T NP+V C++V+DG VIGRG T GG PHAE +AL Sbjct: 4 LPDPETDLRHMRAALALAGRGLGRTWPNPAVGCVLVRDGAVIGRGWTQPGGRPHAETEAL 63 Query: 61 EEAG---EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A A GATAYVTLEPC+HYGR+PPCA ++E + RVVV DPD RV+G GL Sbjct: 64 ARARACSGGAEGATAYVTLEPCNHYGRTPPCALALVEARVARVVVACQDPDPRVAGGGLA 123 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI + + E+E + R R +T KIA + D I A S ITG Sbjct: 124 RLRDAGIAVTTGLCEAEALALNEGFFNRITRNRPLVTCKIASTLDGRIATATGESQWITG 183 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H LRA DAILVGIGT LADDPELTCRL GL++ SP+R+++D +L +K+ Sbjct: 184 PTARAWGHRLRAGHDAILVGIGTALADDPELTCRLPGLEDRSPVRVVMDSGLRLPATAKL 243 Query: 237 IKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSL 290 A P +VT + DP+ A A + I+ D LT L RG+T L Sbjct: 244 ATGARRIPTWVVTGPSPDPMRAGALAALGVEIVPAAADGDGRVDPAAALTALAARGITRL 303 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYF 346 LVEGGAAVA + + + LVD + +R+ +IG G+P+ + F Sbjct: 304 LVEGGAAVAGALLGAGLVDRLEWFRAASLIGGDGLPAVAGFGVGALAAMARFERTSVRDA 363 Query: 347 GSDVCLEYIG 356 G+D+ Y Sbjct: 364 GADLAESYRR 373 >gi|145594417|ref|YP_001158714.1| riboflavin biosynthesis protein RibD [Salinispora tropica CNB-440] gi|145303754|gb|ABP54336.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Salinispora tropica CNB-440] Length = 353 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 181/369 (49%), Gaps = 27/369 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D M A+ + +G TS NP V C+++ G V+G G AY G PHAE+ A Sbjct: 1 MAGVSVDEA-MRRAVDLAARGLGTTSPNPVVGCVLLDPGGQVVGEGFHAYAGGPHAEIVA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L AGE ARG TA VTLEPC H GR+ PC+ +++ G+ RVV+ V DP+ + + G L Sbjct: 60 LAHAGERARGGTAVVTLEPCDHTGRTGPCSTALVQAGVARVVIAVPDPN-QAASGGAATL 118 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ + + +E + A+LT ++ K A + D A S+ IT Sbjct: 119 RAAGVRVDLGVRAAEAEAGNIAWLTSTRRGWPYLLWKYAATLDGRSAAADGTSMWITSEA 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LR DA+L G+GTVLADDP LT R L P+R+++D + ++ Sbjct: 179 ARMDVHALRGTVDAVLAGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGQTPAGAR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + A AP I T ++ + DL LL L RGV + L+EGG Sbjct: 239 VRDDA--APTWIATADE------------VGTDSAGRVDLPALLAALHQRGVRAALLEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +A +F+ + LVD I+ Y + ++G G P+ L + + + + + + Sbjct: 285 PRLAGAFLAAGLVDKIVGYVAPRLLGAG--PTALADAGVTTITDAIDCEVID----VTQV 338 Query: 356 GKNLCLQEL 364 G +L + L Sbjct: 339 GPDLRITAL 347 >gi|114794616|pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 120/363 (33%), Positives = 183/363 (50%), Gaps = 24/363 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 F A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A G Sbjct: 15 ETFXKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKG 74 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ VSG G++ GI Sbjct: 75 EDLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGI 133 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +++ ++E E K ++T +KR + LK A + D I S IT + + +V Sbjct: 134 EVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKL-RFKV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-TALL 242 H R A+LVG GTVL D+P+LTCRL + +P+R+ILD L K+ + Sbjct: 193 HEXRNIYSAVLVGAGTVLKDNPQLTCRL--KEGRNPVRVILDRKG--VLSGKVFRVFEEN 248 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A VI+ TE+++ K ++ +L L R + S+LVEGG+ V F Sbjct: 249 ARVIVFTESEEAEYPPHVEKA------LSDCSVESILRNLYERDIDSVLVEGGSKVFSEF 302 Query: 303 INSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 ++ D + + S + G+G L + + F V ++ S+ +E C Sbjct: 303 LDH--ADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEXRP---C 357 Query: 361 LQE 363 +E Sbjct: 358 SRE 360 >gi|218962081|ref|YP_001741856.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas acidaminovorans] gi|167730738|emb|CAO81650.1| riboflavin biosynthesis protein RibD [Candidatus Cloacamonas acidaminovorans] Length = 368 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 119/357 (33%), Positives = 190/357 (53%), Gaps = 15/357 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A++ + G S NP V +IVK+ VI G T G H+E+QAL++AG++A Sbjct: 7 KQYMQRAIKVAEKARGKCSPNPFVGSVIVKNNQVISEGWTLEYGSDHSEIQALKKAGKKA 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 + AT +VTLEPCSHYG++PPCAQ II+ GI+ V + + DP+ V G+G+ L + GI V Sbjct: 67 KDATLFVTLEPCSHYGKTPPCAQAIIDAGIKEVYIGIYDPNPLVKGKGIAMLKEAGIDVH 126 Query: 128 RMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 E L YL ++R +TLK A++ D + ITG ++ H L Sbjct: 127 YGFLEEKIRTQLECYLCYIQKERPFVTLKTALTLDGKYAAEDGTAHWITGKKAREYAHQL 186 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R+++D +L GI T+L DDP L RL G P+R++LDP+ K+ + S + + P + Sbjct: 187 RSENDVVLTGIMTILFDDPRLNVRLPG-NYKQPLRVVLDPYLKIPVLSYFVSISAKFPGM 245 Query: 247 IVTENDD--PVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++T D+ A R+K + I + +D L ++L +L S+L+E G+ +A Sbjct: 246 VITSPDNLQTDKADILRQKGVKIEALETKDGHFNLHEVLNLLYKMNYYSVLLETGSGIAE 305 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCL 352 +F+ L+D II ++G G SPL +E + + +DV + Sbjct: 306 AFLKEELIDKIIFIYGAKILG--GTKSPLPNLGIESIYKALYIWKTSCRKIENDVVV 360 >gi|119384301|ref|YP_915357.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans PD1222] gi|119374068|gb|ABL69661.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccus denitrificans PD1222] Length = 325 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 124/352 (35%), Positives = 178/352 (50%), Gaps = 32/352 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R +G NP+V C++V+DG+V+GRG T GG PHAE AL +AGE ARGA Sbjct: 1 MRHALALARRGLGNVWPNPAVGCVLVRDGVVVGRGWTQPGGRPHAEAMALAQAGEAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+G++PPCA+ ++ G+ RVV + DPD RV+GRG L GI + + + Sbjct: 61 TAYVTLEPCAHHGKTPPCAEALVRSGMARVVTALTDPDPRVTGRGHAILRAAGIEVAEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E+E + +L+R R +TLK+A S D I A S ITG ++ VH LR Sbjct: 121 CEAEAREVQRGFLSRIQRGRPMLTLKLAASFDGRIATASGESQWITGAQARRHVHALRLG 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG T AD P L R G P+RI++ ++ P Sbjct: 181 HDAVMVGAETARADRPGLNVRGFG-PVRQPVRIVVSSR-------RLPDLPGEGP----- 227 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 P+ +A + + L RG+T +L EGG +A S + + +VD Sbjct: 228 -EHGPLWQVAGE-------------PEAFMAELGTRGLTRVLCEGGGVLAASLLRAGMVD 273 Query: 310 SIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +I Y + +V+G G LE F V GSD+ ++ Sbjct: 274 QLIGYGAGVVLGGDGRAGIGALELEHLADAPRFRLVETRRIGSDIMHRWLRD 325 >gi|312830146|emb|CBX34988.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ECT-R 2] Length = 347 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 166/354 (46%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++V +G ++G G G HAEVQAL+ + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMVQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans A8] gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans A8] Length = 383 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 111/365 (30%), Positives = 181/365 (49%), Gaps = 16/365 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P + D +M AL ++ + T+ NP V C+IV+DG V+G G T G PHAEV AL Sbjct: 3 IPSDNDDIFWMRRALALAQTVMYSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCAL 62 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + GE GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 63 RDVQARGESVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLA 122 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI + + +E +++R + LK+A S D + S ITG Sbjct: 123 RLRLAGIEVTTGVCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWITG 182 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H RA++ +L G+GTVL DDP+L R P + ++D F++ D+++ Sbjct: 183 PEARADGHRWRARACVVLTGMGTVLKDDPQLNVR-GVDTPRQPRKAVVDGRFEIPEDARL 241 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLL 291 A VII T +D + KN ++ DL ++ L + Sbjct: 242 FDG---AEVIIFTAREDAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEVH 298 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGS 348 VE GA ++ + + + VD ++LY + +++G+ + P+ E + + + G+ Sbjct: 299 VEAGAGLSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDGARRYEFIETAPVGA 358 Query: 349 DVCLE 353 D+ + Sbjct: 359 DLRVR 363 >gi|315657966|ref|ZP_07910840.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis M23590] gi|315497002|gb|EFU85323.1| riboflavin biosynthesis protein RibD [Staphylococcus lugdunensis M23590] Length = 383 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 171/353 (48%), Gaps = 14/353 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 ++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G Sbjct: 40 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 99 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + + L+Q GI V + Sbjct: 100 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 157 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + EK IT+K++ S D S IT K V+ LR Sbjct: 158 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 217 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+L G TVLAD+P+ T R+ P+R+IL + + L+ + I T Sbjct: 218 HDAVLTGNKTVLADNPQYTTRV--KDGKHPIRVILSRSGDVDFSLDMFHD-QLSDIWIYT 274 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 E+ L N+ I Y + +L L +GV LLVE G V F+ +LV+ Sbjct: 275 EDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 330 Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +I+Y + +IG G + + F V ++ LE K Sbjct: 331 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 383 >gi|289550476|ref|YP_003471380.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus lugdunensis HKU09-01] gi|289180008|gb|ADC87253.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Staphylococcus lugdunensis HKU09-01] Length = 368 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 112/353 (31%), Positives = 171/353 (48%), Gaps = 14/353 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 ++S A++ ++ G T NP V ++VK+G +IG G G HAEVQA++ AG+EA+G Sbjct: 25 YLSKAIQLAKMVKGQTGVNPPVGAVVVKNGRIIGLGAHLKQGEKHAEVQAIDMAGDEAQG 84 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT YV+L+PC+HYG +PPC II+ G+ +VV V D + + + L+Q GI V + Sbjct: 85 ATIYVSLQPCTHYGSTPPCVNKIIDHGLDKVVYAV--KDTTLPSKSDEILTQAGIQVYQQ 142 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + + EK IT+K++ S D S IT K V+ LR Sbjct: 143 FDHEAYCLYEDFFKAKAEKIPEITVKVSTSIDGKQATDYGQSQWITNKTVKQDVYRLRHS 202 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+L G TVLAD+P+ T R+ P+R+IL + + L+ + I T Sbjct: 203 HDAVLTGNKTVLADNPQYTTRV--KDGKHPIRVILSRSGDVDFSLDMFHD-QLSDIWIYT 259 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 E+ L N+ I Y + +L L +GV LLVE G V F+ +LV+ Sbjct: 260 EDATLTTTLP----NVFINYMSNCKIPDILQDLYKKGVGRLLVEAGPKVTSLFLQQQLVN 315 Query: 310 SIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +I+Y + +IG G + + F V ++ LE K Sbjct: 316 QLIIYFAPKLIGGSGTNQFFQTQEVIDLQDTFEFEIVNSTLLDQNIKLELRKK 368 >gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY] gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY] Length = 370 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 117/356 (32%), Positives = 174/356 (48%), Gaps = 15/356 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65 F+S AL + + L++ NP V C+I D G V+G+G T G PHAEV AL +A G Sbjct: 7 FISQALGLAAQALFLSNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGN 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPC+H GR+ PC +I+ GI RVV V DP+ V+G+G L G+ Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVA 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +E + + +R V + +K A S D + + S IT ++ H Sbjct: 127 VEAGPGAAETRELNIGFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L GIGTVL DDP L R P +I+D + +++ A Sbjct: 187 AWRARACAVLSGIGTVLEDDPLLNVREV-ATPRQPHLVIVDSRLQTPPGARLFDVADRQ- 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V+I + A A R + ++ DL +L L R V L VE G + Sbjct: 245 VLIYAAQGEAQAAEALRARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNG 304 Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ LVD ++LY++ +++G G G+ S PL+ G D+ + Sbjct: 305 SFLREGLVDEMLLYQAPLLLGSGAHGLASWGPLQALSDGVRMEFHSVRQIGPDLRV 360 >gi|218131999|ref|ZP_03460803.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697] gi|217985875|gb|EEC52215.1| hypothetical protein BACEGG_03622 [Bacteroides eggerthii DSM 20697] Length = 347 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 172/348 (49%), Gaps = 20/348 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + T+ NP V +IV DG +IG G G HAEV A+ E Sbjct: 4 EKYMRRCIQLAQNGLCNTAPNPMVGAVIVCDGKIIGEGYHIRCGEAHAEVNAIRSVKEPS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182 ++ ++E + K + ++T R +ITLK A S D I V ++ ++ Sbjct: 124 VIVGVLEEDCKNLIRRFVTFHSLHRPYITLKWAESADKHIDKCRKDGKPVILSTPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ I+VG T D+P LT R Q SP+RI++D +LS + ++ Sbjct: 184 VHKRRAEHSTIMVGTHTAELDNPSLTVR--NWQGQSPVRIVIDRQQRLSPSLHLFDDSIR 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ++ T AF +I L +++ L +G+ SLLVEGG+ + SF Sbjct: 242 --TLVFTGQPHA----AFPNTEYIVIDFQQNILPQIMQHLYAQGLQSLLVEGGSYLLQSF 295 Query: 303 INSRLVDSIILYRSQ-IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 IN+ L D I + S + G+ +P + V YFG + Sbjct: 296 INAELWDEIFVEESPLKLF--SGVKAPEIGNKIP----YVNEQYFGRN 337 >gi|189462016|ref|ZP_03010801.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136] gi|189431230|gb|EDV00215.1| hypothetical protein BACCOP_02688 [Bacteroides coprocola DSM 17136] Length = 344 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 111/345 (32%), Positives = 173/345 (50%), Gaps = 14/345 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ +R + + NP V +IV + +IG G G HAEV A+ +E Sbjct: 4 DEKYIRRCIQLARNGMCNAAPNPMVGAVIVCNDRIIGEGYHVRCGEGHAEVNAIRSVKDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA II GI RVVV DP VSGRG+Q L GI Sbjct: 64 SLLKKSTIYVSLEPCSHYGKTPPCADLIISKGIPRVVVGCVDPFSLVSGRGIQKLRDAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKN 181 + ++E+E + + ++T ++KR +ITLK A S D I V ++ I+ Sbjct: 124 EVTVGVLENECRALIKRFVTFNIQKRPYITLKWAESADGFIDVNRESGQPVILSTPITSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ AILVG T L D+P LT R +P+R+++D L L+ K+ Sbjct: 184 YVHKQRAEHQAILVGRKTALLDNPSLTTR--NWYGKNPIRLVIDKELTLPLNLKLFD--G 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P + T + K + + L ++L IL + SLLVEGG+ + S Sbjct: 240 KTPTWVFTALEKESTTNIIYYK----LDFNQNILPQILQILYENKLQSLLVEGGSQLLQS 295 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 FI+ + D I + S+ ++ G+ P+ K + ++ Sbjct: 296 FIDEEIWDEIYIEYSEALL-HKGVKHPVVPAGYGKQVLSKDKNTI 339 >gi|89891631|ref|ZP_01203135.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BBFL7] gi|89516178|gb|EAS18841.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BBFL7] Length = 337 Score = 301 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 178/366 (48%), Gaps = 40/366 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 +++ D ++M L+ ++ +G T NP V +IV + +IG G G PHAEV A+ Sbjct: 1 MTTED-KYMQRCLQLAQNGLGTTYPNPLVGSVIVSENDEIIGEGWHLKSGEPHAEVNAVR 59 Query: 62 EA------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A G+ AT YV LEPCSH G++PPCA I++ G ++VVV DP +V+G+G Sbjct: 60 DAEKKGYDGDAFAKATIYVNLEPCSHTGKTPPCASMIVQKGFKKVVVGTLDPHDKVAGKG 119 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GS 171 + + + GI +V ++E E + T +R ++ LK A + D I A Sbjct: 120 ITIIEKAGIEVVVGILEKECNELNKRFFTFHRRQRPYVILKWAETSDGFIAPATKNEQQP 179 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 V IT S+ H LRA+ DAILVG TV+ D+P LTCR +P R+ILD ++ Sbjct: 180 VWITNKYSRQLSHQLRAEEDAILVGAKTVIDDNPSLTCR--DWSGKNPTRVILDSRNSIT 237 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 D +++ A AP + + + ++L L V S++ Sbjct: 238 SDYQVMDDA--APTL--------------------KLQLSSSNTLEILNSLYQNNVQSVI 275 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +EGG SFI++ L D + V+ G+ +P+ +G ++ + R +DV Sbjct: 276 IEGGTTTIQSFIDTGLWDEAYQFMGTEVLFHEGLQAPVLKG----DYSMLYRKMIANDVL 331 Query: 352 LEYIGK 357 Y K Sbjct: 332 KIYRKK 337 >gi|332885428|gb|EGK05677.1| riboflavin biosynthesis protein RibD [Dysgonomonas mossii DSM 22836] Length = 348 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 111/338 (32%), Positives = 164/338 (48%), Gaps = 16/338 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M L+ + G S NP V ++V + +IG G G HAEV A+ Sbjct: 2 TVDEKYMYRCLQLALNGKGFVSPNPMVGAVVVHNDKIIGEGFHREYGKAHAEVNAIASVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ + +T YV+LEPC+H G++PPCAQ II+ I VV+ DP VSGRG++ L Sbjct: 62 DKSLLKESTIYVSLEPCAHQGKTPPCAQLIIDNQIPHVVIACLDPYPAVSGRGIKMLQDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG-----CGSVPITG 176 GI + ++E E + T Q + R +I LK A +QD I A PI+ Sbjct: 122 GIKVDVGILEREAWELNKEFFTIQTKGRPYIYLKWAQTQDGFIDKARDEKDIPQPTPISN 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 SK VH RA AI++G T + D+P LT R +P+R+ILD ++ LD I Sbjct: 182 EFSKMLVHKKRAVVPAIMIGTNTAIKDNPSLTTR--HWYGKNPVRVILDRQGRIPLDYTI 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 I+ TE + K I D L+ + T L R + S+LVEGG Sbjct: 240 FD--GKVETIVFTEKESSPK---LEKVTFIQIPFDENILENIFTTLKKRKIISVLVEGGQ 294 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + S I+ RL D + S I G+ +P+ G++ Sbjct: 295 ELLQSIIDKRLWDEAFIEISGITF-NNGVRAPIIAGHV 331 >gi|226226877|ref|YP_002760983.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Gemmatimonas aurantiaca T-27] gi|226090068|dbj|BAH38513.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Gemmatimonas aurantiaca T-27] Length = 384 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 124/361 (34%), Positives = 183/361 (50%), Gaps = 13/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D RFM A+ + G + NP V ++V+DG V+G G G PHAEV AL A Sbjct: 22 TVDDVRFMRRAIALAERGAGQVAPNPKVGAVLVRDGQVVGEGWHQQYGGPHAEVHALAAA 81 Query: 64 GEEARGATA----YVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A A YV+LEPC+H+G++PPC + +I G+ RVV DP+ + +G G++ L Sbjct: 82 HAVAANAARGATAYVSLEPCNHHGKTPPCTEALIAAGVARVVCATRDPNPKAAG-GIERL 140 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQV-EKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 GI + + E E + + R +TLK+AVS D I A +TG Sbjct: 141 EAAGIRVTVGVCEHEALVQNAPFFHAARGTDRPFVTLKLAVSIDGAIVDASRQRGWLTGP 200 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 + VH LRA +DA+ VGIGT LADDP LT RL +P RI+ D +L LDS ++ Sbjct: 201 AAHAAVHALRADADAVAVGIGTALADDPALTVRLVEAPRVAPRRIVFDRQGRLPLDSALV 260 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +TA PV ++T PV A A + ++ L L L GV LLVEGGA Sbjct: 261 RTAGEIPVSVITHAPRPVAANALADAGVQVLEAAG--LADALRTLWAEGVRHLLVEGGAE 318 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + + +++ LV +I++++ +++G G + + P + R FG D+ Sbjct: 319 LGSALLHAGLVHHLIIFQAPVILGAGAVSAFATFPAAVADTAPRLRVLERRVFGDDLMTR 378 Query: 354 Y 354 Y Sbjct: 379 Y 379 >gi|329733229|gb|EGG69566.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus 21193] Length = 347 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G + L +GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKITKVVYAT--KDNSLDTHGDETLRAQGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERALQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I IIY +L +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIIYLKSCELTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|312877999|ref|ZP_07737939.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor lactoaceticus 6A] gi|311795234|gb|EFR11623.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor lactoaceticus 6A] Length = 371 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMNMALDLAKKASPLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YV+LEPC H+G+ PPC + II+ GI++VVV DP+ V+G G+Q L Q GI Sbjct: 68 LLKNATMYVSLEPCCHFGKQPPCTEAIIKSGIKKVVVATRDPNPLVNGNGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E + + + + +K+A S D I + VH Sbjct: 128 VVEGVLQKEAESINKDFFKYIKKGIPYTAIKVAQSIDGKIAKPSNKRFLFSTEEENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R + P+R++LD ++ L+ I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARYGEI-VRQPIRVVLDTKLRIPLECNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ DL + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIDLLSQKGIKIIFAKSSEDGHLDLSDAFSKLAQQKIVSVLVEGGSL 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + E+ F + Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQHTKGAVGGEGFEEFFPKL 350 >gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110] gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110] Length = 375 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 119/359 (33%), Positives = 170/359 (47%), Gaps = 19/359 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 FM+ AL +R T NP V C++V +G VIG+G T G PHAEV AL +A G Sbjct: 10 FMAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGH 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 GATA+VTLEPC+H+GR+ PC + GI RVV + DP+ V+G+G + L G+ Sbjct: 70 SVAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVA 129 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + E + + +R V K + LK A S D G+ S IT ++ H Sbjct: 130 VEVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGH 189 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L G+GTVL DDP L RL P +I+D + ++I P Sbjct: 190 AWRARASAVLTGVGTVLEDDPRLDVRLVETT-RQPHVVIVDSQLQTPPGARIFMAGR--P 246 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V I D A A + + I Y DL +L L R V L VE G + Sbjct: 247 VWIYAAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNG 306 Query: 301 SFINSRLVDSIILYRSQIVIGEG-----GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352 S + LVD +++Y + +IG+G GI + PL + + G D+ + Sbjct: 307 SLLREGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTIERIGPDLRI 365 >gi|218296564|ref|ZP_03497292.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23] gi|218243106|gb|EED09638.1| riboflavin biosynthesis protein RibD [Thermus aquaticus Y51MC23] Length = 377 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 172/372 (46%), Gaps = 21/372 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D RF+ AL+ + G T NP V ++V+DG ++G G G PHAE ALE Sbjct: 1 MRDLDERFLRRALQIAERARGHTHPNPLVGAVVVRDGEIVGEGYHPRAGAPHAEALALEA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGAT YV+LEPC H+GR+PPC+ +I G+ RVV+ DP+ G + L+ Sbjct: 61 AGERARGATVYVSLEPCDHHGRTPPCSLALIRAGVARVVLAARDPNPLAQGGMARLLAAG 120 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++E E + A+ T R + LK A++ D + + ++ S+ Sbjct: 121 VAVEAGLLEEEAQDQNEAFFTALRRGRPFVLLKAALTLDGRVATRLGDARYVSSEASRRV 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFKLSL 232 H R A++VG+GTVL DDP LT R + P++++LD + Sbjct: 181 AHAYRQWLPAVMVGVGTVLQDDPALTVREPDFRPFPLMLEPPPLRDPLKVVLDTEARTPP 240 Query: 233 DSKIIKTALLAP----VIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVG 284 +++ + +I+ E A + ++ L +L Sbjct: 241 TARLFRPGPRGERARVLILAGEGAPKERLKALEAAGARVEELPREGGRVSPERALALLRA 300 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCV 341 G+ +L+EGG +A +F+ LVD + L+ + ++GEG +E Sbjct: 301 EGIDGVLLEGGPGLAGAFLARGLVDKLALFLAPKLLGEGRGLLEGFGVERMAEALRLRLH 360 Query: 342 RRDYFGSDVCLE 353 RR++ G D+ LE Sbjct: 361 RREWLGDDLWLE 372 >gi|298695036|gb|ADI98258.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus ED133] Length = 343 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 113/352 (32%), Positives = 165/352 (46%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ + Sbjct: 61 TIYITLEPCSHFGLTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRDHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase [Polaromonas sp. JS666] gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp. JS666] Length = 373 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 170/360 (47%), Gaps = 20/360 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 F+ AL +R VG + NP V C+I D V+G G T G HAE+ AL +A Sbjct: 7 FIDQALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARR 66 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 GATAYVTLEPCSH+GR+ PC +I GI++VV + DP+ VSG+G + + GI Sbjct: 67 HVVAGATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V +E + + +R + K + +KIA S D + S IT ++ Sbjct: 127 EVVVGPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDG 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA++ AIL GIGT+L D+P L R + P +++D +L L++ + Sbjct: 187 HAWRARASAILTGIGTILEDNPRLDVR-SVATPRQPHLVVVDSRLQLPLNANLFTGNR-- 243 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCR--------DLKKLLTILVGRGVTSLLVEGG 295 + + D A ++ + +IY R DL +L L R V + VE G Sbjct: 244 TIYVYAAVPDDAKKTALEERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 + S + LVD ++Y + ++G G + PL++ + G D+ + Sbjct: 304 HKLNGSLLREELVDEFLVYLAPKLLGSGNGMASFGPLQQLSDAVPLEFLSAQPVGVDLRV 363 >gi|242374059|ref|ZP_04819633.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis M23864:W1] gi|242348184|gb|EES39786.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis M23864:W1] Length = 347 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 174/354 (49%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ AG+ A+ Sbjct: 3 RFMNYAIQLAQMVDGQTGINPPVGSVVVKDGRIVGLGAHLKKGDKHAEVQALDMAGQAAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 AT YV+LEPC+H+G +PPC IIE GI++V+ + D + +G + L + GI V+ Sbjct: 63 DATIYVSLEPCTHHGSTPPCVDKIIEFGIKKVIYAI--KDTTLVSKGDEILKEAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + +T+K++ S D S IT K V+ LR Sbjct: 121 QFNEDAAELYKDFFPAKRKGIPELTVKVSSSLDGKQATDLDESKWITNKEVKEDVYRLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ ADDP T R+ +P+R+IL ++ + ++ K + + I Sbjct: 181 EHDAVVTGRKTIEADDPLYTTRVP--DGKNPIRVILSKTGDINFEHQLFKDT-TSQIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K+I II + ++L L RG+ LLVE G + F+ S + Sbjct: 238 TENE----KLKNNDKHIEIINMQECETTEILKDLYRRGIGKLLVEAGPNITSQFLQSDHL 293 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYLAPKLIGGSGKHQFFKTDEVIDLPEATQFEIVYSKLINQNIKLKLRKK 347 >gi|302786796|ref|XP_002975169.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii] gi|300157328|gb|EFJ23954.1| hypothetical protein SELMODRAFT_102410 [Selaginella moellendorffii] Length = 563 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 164/366 (44%), Gaps = 17/366 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 FD+ M A + G T+ +P+ AC+I + V+G G AE+QA+E AGE Sbjct: 8 FDSFHMLRAAELADGSAGHTAPHPNSACVIARSEKVVGEAFLYGQGTRCAEIQAVEMAGE 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +RGATAY+ LEP +G + + + G+ RVVV + P SG+ + L GI Sbjct: 68 LSRGATAYLNLEPGDCHGDDTAI-KALKQSGVARVVVGLQHPLKHHSGKAIAALRGLGIP 126 Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 VD + + + L R + LK A++ D I + + ++ Sbjct: 127 VDVLEKHGDGTFKEAFRACQEVNAPLLYRATHEVPFSILKYAMTLDGKIAASTGHASWVS 186 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 +S+ +V R +SDAI+VG TV D+P LT R G H P+R+++ L L+ Sbjct: 187 SKMSRQRVFETRGRSDAIIVGGNTVRRDNPRLTTRREG--GHLPVRVVMSRTLNLPLELH 244 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + + +++ + + ++ D K ++ RG ++L E G Sbjct: 245 LWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCYERGFLTVLWECG 304 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A++ + + ++ +I + + +IG P+P+ E + + + DV E + Sbjct: 305 GALSAPALAAGIIHKVIAFVAPKIIGGVTAPTPVGELGMVEMTQALNLL----DVTFEQV 360 Query: 356 GKNLCL 361 G ++ + Sbjct: 361 GPDMLV 366 >gi|116493546|ref|YP_805281.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus pentosaceus ATCC 25745] gi|116103696|gb|ABJ68839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pediococcus pentosaceus ATCC 25745] Length = 353 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 118/362 (32%), Positives = 182/362 (50%), Gaps = 21/362 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D +M+ A + T TNP V +IVK+ +V+ +G G HAE+ AL+ Sbjct: 4 ISEQD--YMNLAFEMAEKGKYQTWTNPLVGAVIVKNNVVLAKGYHHQFGAAHAEIDALQH 61 Query: 63 AGE--EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + +ARGAT YV+LEPCSH+G++PPCA+ + E GI+ VVV DP+ V+GRGLQ L Sbjct: 62 LDDLKQARGATMYVSLEPCSHFGKTPPCAKKLAEVGIKAVVVGQKDPNPLVAGRGLQILR 121 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + + + Y +R ++ +K A++ D I ITG + Sbjct: 122 DAGIEIKVLN--QTGGLNVKYNFFYQHQRPYVNVKYAMTLDGKINQQANQRSIITGKEAY 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP---HFKLSLDSKII 237 LRA+ AILVG T+ D P+LT R + + P R++L K+ D Sbjct: 180 QDSQQLRAEYQAILVGENTLKVDHPQLTVRQIAVYQ-QPWRMVLIRDVDQLKV-EDYAFF 237 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 KTA P++++T + + N+ +I D K+LT+L RG+ S+LVEGG+ Sbjct: 238 KTAD--PILLLTSS----VTRRQWPNNVEVIS-DRWTPNKILTLLAKRGIQSVLVEGGSQ 290 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + F+ S LVD I +Y + + G G+P+ P + Y + V + G D+ Sbjct: 291 IHAEFLASGLVDEINVYLAPRIYGATGLPAIFNPTQLPYQSNAYQLVEKMELGPDMKFRL 350 Query: 355 IG 356 Sbjct: 351 RR 352 >gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1] gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1] Length = 377 Score = 301 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 116/369 (31%), Positives = 172/369 (46%), Gaps = 18/369 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQAL 60 P S D M AL+ + + TS NP V C++V G +IG+G T G PHAEV AL Sbjct: 7 PASPADL--MQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMAL 64 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 +A G GATAYVTLEPCSH+GR+ PC ++E GI RVV + DP+ V+G+G + Sbjct: 65 RDARARGHATHGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFE 124 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L G+ + + + + +R + +K A S D + S IT Sbjct: 125 RLRGAGVQVEVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITS 184 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H RA++ A+L GIGT+LADDP L R P I+D H + ++ Sbjct: 185 PEARADGHAWRARACAVLTGIGTILADDPRLDVREAE-TPRQPHLAIIDSHLQTPPGARF 243 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSL 290 + ++I T + D A + + +I DL +L L R V L Sbjct: 244 FEVPQRQ-ILIYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNEL 302 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFG 347 VE GA + + + +RLVD I+LY + ++G G + P D G Sbjct: 303 HVEAGARLNGALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVG 362 Query: 348 SDVCLEYIG 356 +D+ + G Sbjct: 363 ADLRIIARG 371 >gi|94970364|ref|YP_592412.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus Koribacter versatilis Ellin345] gi|94552414|gb|ABF42338.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Koribacter versatilis Ellin345] Length = 399 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 123/384 (32%), Positives = 188/384 (48%), Gaps = 30/384 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 +S D RF AL + + + S NP V ++V DG VIG G Y G HAEV ALE+ Sbjct: 13 ASPDERFTLRALELASKGIAMASPNPRVGAVVVNADGEVIGEGFHMYDGLKHAEVLALEQ 72 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT Y+ LEPCSH GR+ PCA +I GI+RVV + DP+ V+GRG L + Sbjct: 73 AGNAARGATLYLNLEPCSHEGRTGPCADAVIAAGIKRVVCSMPDPNPLVAGRGFAKLREA 132 Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--------P 173 G+ + + + + R +TLK A++ D I Sbjct: 133 GVELLVGVFADYARKLNEGFSKRIRTGLPLVTLKAAMTLDGKIAPPPAEVTDIGFSQPGW 192 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 IT I++ V LR +D+I++G+GTV++D+P LT R + +R++LD +L LD Sbjct: 193 ITSEIARAHVQELRHAADSIMIGVGTVVSDNPLLTDRTGLPRRRPLLRVVLDSQLRLPLD 252 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--------------CRDLKKLL 279 S+++KTA V++ + A ++ I + DL ++ Sbjct: 253 SRLVKTAH-HDVLVFCSFAEEKKRAALEERGIQVEQVPLAKNEPGGVAVAGGRPDLNAVV 311 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKN- 337 L R + SL+VEGGAAV + + + +VD + LY + ++G G +P L GY + Sbjct: 312 ERLGARELNSLIVEGGAAVNWAALAAGIVDKVFLYYAPKILGGGNAVPFALGPGYARMDE 371 Query: 338 ---FMCVRRDYFGSDVCLEYIGKN 358 + FG D +E ++ Sbjct: 372 AAYLRNLELHRFGEDFAVEGYLRD 395 >gi|253735372|ref|ZP_04869537.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|269203407|ref|YP_003282676.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ED98] gi|253726661|gb|EES95390.1| riboflavin specific deaminase [Staphylococcus aureus subsp. aureus TCH130] gi|262075697|gb|ACY11670.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus ED98] Length = 343 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 112/352 (31%), Positives = 165/352 (46%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++V +G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVNEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G + L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + P+ I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTSNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|224536352|ref|ZP_03676891.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus DSM 14838] gi|224522049|gb|EEF91154.1| hypothetical protein BACCELL_01226 [Bacteroides cellulosilyticus DSM 14838] Length = 348 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 170/329 (51%), Gaps = 20/329 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ E Sbjct: 7 EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGKAHAEVNAIRSVKETS 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 67 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182 ++ ++E E + + ++T R +ITLK A S D I V ++ ++ Sbjct: 127 VIVGVLEDECRHLIKRFITFHTLHRPYITLKWAESADGFIDLCRTEGNPVILSTPLTSML 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ AILVG T D+P L R SP+R+++D LS + ++L Sbjct: 187 VHKKRAEHSAILVGTRTAKLDNPSLNVR--NWYGRSPIRLVIDRKQSLSPTLHLFDGSVL 244 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ TE+ L N+ + D + L +++ IL RG+ SLLVEGG+ + Sbjct: 245 --TLVFTEHFHDALP------NVEYLPIDFQQDILPQIMQILYERGIQSLLVEGGSTLLQ 296 Query: 301 SFINSRLVDSIILYRSQI-VIGEGGIPSP 328 SFI++ L D + + S +I G+ +P Sbjct: 297 SFIDAGLWDEVYVEESPRSLI--SGVKAP 323 >gi|271964337|ref|YP_003338533.1| diaminohydroxyphosphoribosylaminopyrimidinedeami nase [Streptosporangium roseum DSM 43021] gi|270507512|gb|ACZ85790.1| Diaminohydroxyphosphoribosylaminopyrimidinedeami nase [Streptosporangium roseum DSM 43021] Length = 388 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 113/341 (33%), Positives = 158/341 (46%), Gaps = 27/341 (7%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M A+ + G TS NP V C+++ G V+G G AY G PHAEV AL AGE Sbjct: 3 DQAHMRRAIELAARGRGTTSPNPVVGCVVLDAAGQVVGEGFHAYAGGPHAEVVALRAAGE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARG TAYVTLEPC H GR+ PCA ++E GI RVVV V DP+ +G + + Sbjct: 63 RARGGTAYVTLEPCDHTGRTGPCALALLEAGIARVVVAVRDPNPAAAGGADRLTRHGVAV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E +LT R H+T K A + D A S IT S+ VH Sbjct: 123 TTGVLAEEAGRGNAEWLTSVRLGRPHVTWKYAATLDGRSAAADGTSQWITSPESRADVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQE--------------------------HSP 219 LR ++DAI+ GIGTVLADD LT R P Sbjct: 183 LRGEADAIIAGIGTVLADDARLTVRRPAADGAPAGVDSGLPDGAATARPLAQGAPATRPP 242 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 +R+++D + L ++++ V + + D LA + DL LL Sbjct: 243 LRVVVDSDARTPLTARVLDGRAPTLVAVADDADADALAAGAEVVRLARRRPYGLDLAGLL 302 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 L R + +L+EGG +A SF+ L+D ++ Y + ++ Sbjct: 303 AELHRRQIVGVLLEGGPTLAGSFLKEGLIDRVVGYLAPALL 343 >gi|332878860|ref|ZP_08446575.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683211|gb|EGJ56093.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 350 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 110/328 (33%), Positives = 169/328 (51%), Gaps = 11/328 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ ++ +G T NP V +IV + VIG G G HAEV+A+ ++ Sbjct: 3 DQQYIHRCIQLAQNGLGTTYPNPVVGSVIVYNDRVIGEGWHVRAGEAHAEVRAIASVKDK 62 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +T YV+LEPCSHYG++PPCA II I RVV+ DP +V+GRG+Q L + G Sbjct: 63 QLLSESTLYVSLEPCSHYGKTPPCADLIIAHRIPRVVIGCTDPFAKVAGRGIQKLREAGC 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISK 180 +V + + E + + T +KR +I LK A ++D +I ITG ++ Sbjct: 123 EVVVGVCQEECEALNKRFFTFHQKKRPYIFLKWAETRDGLIAPLHKQEIAPQWITGAYAR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VHLLR+ AILVG GTV AD+P L+ R SP+R+I+DP D + Sbjct: 183 QYVHLLRSTEAAILVGAGTVWADNPSLSTR--SWYGKSPLRVIIDPRLSTRKDFNVWNDE 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + P + + + D + ++ + I L +L +L R V SL+VEGGA Sbjct: 241 V--PTLFIADRDYKGVRHFGQRTEVACIDFGGEVLPQLCKVLYEREVQSLIVEGGAHTLQ 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328 FI + L D +++R V G+ +P Sbjct: 299 QFIKADLWDEALVFRGDTVF-TNGLKAP 325 >gi|255009912|ref|ZP_05282038.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis 3_1_12] gi|313147700|ref|ZP_07809893.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12] gi|313136467|gb|EFR53827.1| riboflavin biosynthesis protein ribD [Bacteroides fragilis 3_1_12] Length = 346 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 119/354 (33%), Positives = 179/354 (50%), Gaps = 22/354 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ +R + S NP V +IV D +IG G G HAEV A+ + Sbjct: 4 EKYMRRCIQLARNGLCNVSPNPMVGAVIVCDEQIIGEGYHVRCGEAHAEVNAIRSVKDPS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSH+G++PPCA IIE I ++V+ DP +V+G+G+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPKIVIGCQDPFSKVAGKGIQKLRNAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG--CGSVPITGFISKNQ 182 ++ ++E E + + ++T R +I LK A S D I + V ++ ++ Sbjct: 124 VIVGVLEKECRELIQKFITFHTLHRPYIVLKWAESADGFIDLERTEGHPVLLSTPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+SDAI+VG T L DDP LT R H+P+RI LD + L S ++ + Sbjct: 184 VHKKRAESDAIMVGTRTALLDDPALTVR--HWYGHNPVRIALDRNHSLPQTSHLLDGS-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 P +I TE P KKN+ I D L ++L L R + SL+VEGG + Sbjct: 240 VPTLIFTECHRP------GKKNLEYIPLDYQTDILPQILATLYQRNLQSLMVEGGKILLE 293 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 SFI S + D II+ RS + G+ +P + EK+F R Y + Sbjct: 294 SFICSGIWDEIIIERSDKRL-YSGVKAPEISDKISYSEEKHFATTFRHYLKRNT 346 >gi|312134474|ref|YP_004001812.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor owensensis OL] gi|311774525|gb|ADQ04012.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor owensensis OL] Length = 371 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G +IG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKKASYLVLPNPRVGCVIVKNGTIIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + AT YV+LEPCSH+G+ PPC + II+ GI++VVV DP+ V+G+G+Q L Q GI Sbjct: 68 SLKNATMYVSLEPCSHFGKQPPCTEAIIKSGIKKVVVATRDPNPIVNGKGIQILKQHGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ +++ E +I + +I +K+A S D I VH Sbjct: 128 VVEGVLQKEAEIVNKEFFKYMKTGIPYIAIKVAQSIDGKIATPSNKRFLFNTDDENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDTKLRIPLECNIVKTSDEYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D ++ I IIY +L + L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIDLLSQRGIKIIYAKSSEDGHLELSDAFSKLAQQKIISVLVEGGSM 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + + E+ F + Sbjct: 307 LNFSLLKKRIADYWYSLIFNVFIGGENTKGVVGKEGFEEFFPKL 350 >gi|302533295|ref|ZP_07285637.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C] gi|302442190|gb|EFL14006.1| riboflavin biosynthesis protein RibD [Streptomyces sp. C] Length = 376 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 122/307 (39%), Positives = 161/307 (52%), Gaps = 6/307 (1%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G V+G G G PHAEV AL AGE ARG Sbjct: 23 MRRAIELASRGLGSTSPNPVVGCVITDPAGAVVGEGWHERAGGPHAEVHALRAAGEAARG 82 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPC+H GR+ PCAQ +++ GI RVV V DP+ + SG G L GI + Sbjct: 83 GTAYVTLEPCNHTGRTGPCAQALVDAGIARVVYAVSDPNPQASGGGAT-LRAAGIDTEAG 141 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+LT R H+T K A + D S IT S+ VH LRA Sbjct: 142 LLADEAEQGNTAWLTSVRLGRPHVTWKYAATLDGRSAAEDGSSRWITSPESRADVHRLRA 201 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++DA+LVG GT+ ADDP L R P+R+ LD L ++I+ A AP +IV Sbjct: 202 EADAVLVGGGTLRADDPHLAVRGVDGAV-QPLRVALDTRAGLPATARILDDA--APTLIV 258 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T D L + L LL L GRGV S+L+EGG +A +F+ + V Sbjct: 259 TGEDADTAHLPGTDVLRLPLRDGRLPLGPLLAELYGRGVRSVLLEGGPTLAGAFLEAGAV 318 Query: 309 DSIILYR 315 D ++ Y Sbjct: 319 DRVVGYI 325 >gi|82751356|ref|YP_417097.1| riboflavin specific deaminase [Staphylococcus aureus RF122] gi|82656887|emb|CAI81317.1| riboflavin specific deaminase [Staphylococcus aureus RF122] Length = 347 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 165/354 (46%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A Sbjct: 3 QFMDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAE 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ Sbjct: 63 GATIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRDHGIEVEC 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + ++ IT+K++ S D S IT K V+ LR Sbjct: 121 VDDERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G TV DDP+ T + +P+++IL + + +I + P+ I Sbjct: 181 RHDAVLTGRRTVELDDPQYTTLIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L + +I II DL +L L RGV +LLVE G F+ S + Sbjct: 238 TENPN----LTTNQTHIEIICLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYI 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ILY + +IG G + E F V + +V L K Sbjct: 294 DEFILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 347 >gi|319401074|gb|EFV89293.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis FRI909] Length = 347 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 111/354 (31%), Positives = 170/354 (48%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG A+ Sbjct: 3 RFMDDAIQLAQMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNAQ 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKTGQLDFNQQIFKDT-ASEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ + Sbjct: 238 TENE----KLKTDKSFIKIINISNCDTATILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347 >gi|149914282|ref|ZP_01902813.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b] gi|149811801|gb|EDM71634.1| riboflavin synthase subunit alpha [Roseobacter sp. AzwK-3b] Length = 365 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 143/363 (39%), Positives = 202/363 (55%), Gaps = 10/363 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DARFM+ AL R G NP+V C++V++G V+GRG T GG PHAE QAL Sbjct: 1 MSRDDARFMALALSLGRRGQGRCWPNPAVGCVVVREGRVVGRGWTGVGGRPHAEPQALAR 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGAT YV+LEPC+H+GR+PPC++ +I G+ RVV V D D RVSG+G L Sbjct: 61 AGAAARGATVYVSLEPCAHHGRTPPCSEALIAAGVARVVAPVSDSDPRVSGKGFARLRSA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E L +L R R H+TLK+A S D I A S ITG +++ Sbjct: 121 GIEVTTGVLAEEAMRDLGGFLRRAGGGRPHLTLKLATSLDGRIATASGHSQWITGPQARH 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA++VG GT ADDP LT R G P+RI++ L L S++ +TA Sbjct: 181 AVHAMRARHDAVMVGAGTARADDPMLTVRGQGDVARQPVRIVVSRRLDLPLMSQLAQTAR 240 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGA 296 PV + D D LA A+ I CD D++ +L L +G+T + EGG Sbjct: 241 EVPVWLCHGPDPDAALADAWDGIGAERIACDLTGRQLDMEAVLLALGQKGLTRIFCEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 ++A S + + LVD ++L+ + ++IG G+PS L+ + F G+D Sbjct: 301 SLAASLLGAGLVDELVLFSAGLMIGAEGLPSLGAMGLDRLDGAERFRLQELRALGNDAMS 360 Query: 353 EYI 355 +I Sbjct: 361 RWI 363 >gi|148242850|ref|YP_001228007.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. RCC307] gi|147851160|emb|CAK28654.1| Riboflavin biosynthesis protein ribD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. RCC307] Length = 366 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 105/311 (33%), Positives = 157/311 (50%), Gaps = 4/311 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 P D +M+ AL + G TS NP V C+++ +G ++G G G PHAEV AL Sbjct: 4 PPIPSDRHWMARALALAALADGRTSPNPLVGCVVLDANGELVGEGYHRQAGEPHAEVMAL 63 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ A+G T YVTLEPC H+GR+PPC++ +I G+RRVV+ + DPD RV+G G+ L Sbjct: 64 RRAGDRAKGGTLYVTLEPCCHHGRTPPCSEAVIAAGLRRVVIALADPDPRVAGGGIAQLK 123 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ ++ + ++E A+L R R LK A+S D + S I+ + Sbjct: 124 AAGMEVISGVRQAEAAQQNRAFLHRIRTGRPWGLLKWAMSLDGRTALPNGASQWISSPPA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ VH LRA DA++VG GTV AD+P LT R G + P+R++L L D+++ Sbjct: 184 RSWVHHLRAAVDAVIVGGGTVRADNPLLTSR--GQRSPEPLRVVLSRTLDLPSDAQLWDQ 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 ++ + + I + LL L RG +L E G +A Sbjct: 242 TSATTLVAHGPEAPAQARQQLDQLGVERIELVACEPAALLEALAQRGCNRVLWECGPQLA 301 Query: 300 HSFINSRLVDS 310 + I S V Sbjct: 302 AAAIASGCVQE 312 >gi|302343809|ref|YP_003808338.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM 2075] gi|301640422|gb|ADK85744.1| riboflavin biosynthesis protein RibD [Desulfarculus baarsii DSM 2075] Length = 377 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 125/359 (34%), Positives = 181/359 (50%), Gaps = 14/359 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D FM+ AL +R +G +S NP+V L+V +G ++GRG G PHAE AL +AG Sbjct: 9 LDRHFMARALALTRRGLGRSSPNPAVGALVVAEGRIVGRGWHVKKGQPHAEPLALAQAGA 68 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGAT YVTLEPC+H G +PPC Q I+ G+ RVV DP+ V+G G +L+ +G+ Sbjct: 69 AARGATLYVTLEPCNHQGATPPCTQAILRAGVARVVYGAGDPNPTVAGGGGAFLAGRGLA 128 Query: 126 VDRMMESEGKIFLHAYL-TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ + +E F H + T + R H+ LK A + D A S ITG S+ VH Sbjct: 129 VEAGVLAEQCAFEHRFFLTHITKGRPHVILKTAATLDGKTATASGDSRWITGPASRRFVH 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR D + VG+GT L DDP+LTCRL G P+R+I+D ++ +K+ A Sbjct: 189 RLRGWCDCVCVGVGTALVDDPQLTCRLPG--GRDPLRVIVDSRLRIDHRAKVFDPAAGGG 246 Query: 245 VIIVTEN-DDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++ P R ++ DL +LL L RGV +L+EGGA + Sbjct: 247 CLVACGPLARPADMERLRAVGAEVLRLSPAAGGGLDLAELLDHLGRRGVIGMLLEGGATL 306 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCL 352 A F++ LVD ++ + + ++G L + + R F DV L Sbjct: 307 AWGFLSQGLVDEVMYFFAPKLLGGATAAPMLGGAGVAAMAQAIELGAPRLRRFNPDVLL 365 >gi|57867218|ref|YP_188900.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis RP62A] gi|57637876|gb|AAW54664.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis RP62A] Length = 347 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG + Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ + Sbjct: 238 TENE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347 >gi|227893613|ref|ZP_04011418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus ultunensis DSM 16047] gi|227864473|gb|EEJ71894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus ultunensis DSM 16047] Length = 352 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 104/352 (29%), Positives = 171/352 (48%), Gaps = 11/352 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL+ ++ T NP V +IVK+ V+ G + G HAE A+ + Sbjct: 2 EKDQYYMNLALQEAKKGRFQTWKNPMVGAVIVKNNQVLATGHHIHYGQNHAERDAISKLT 61 Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ +T YVTLEPC+HYG+ PPC+ I++ I+RVV+ DP V+G+G+ L Sbjct: 62 PEQLFNSTLYVTLEPCNHYGKQPPCSDLIVKSKIKRVVIGQVDPHKLVTGKGIAKLKSHN 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ S+ + Y + IT+K A S D + IT + Sbjct: 122 IEVKTGVLTSKIEELNKFYNYFYRNNKPWITIKEATSLDYRVSQNKNTRTNITNQSVYFR 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240 VH RA AI++G T + DDP L + ++ P+R+I+D +L LD K++ T Sbjct: 182 VHQERANYQAIMIGSSTAIIDDPSLLT--SVKTDYPPIRVIVDRRGRLLNHLDLKVL-TD 238 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + I T+N D + NI ++ +L +++ L R + S+ VEGG +A Sbjct: 239 HQSLTWIFTQNKDLIRKKF--NDNIQVLLMKSNELSEVVNKLAQREIQSIYVEGGPTLAR 296 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+N L + +I Y + +G G L G L N V+ + +++ + Sbjct: 297 SFLNEDLANELIDYIAPTFLGSAGPAGVLPRGNL--NLHNVQIENLNNNIRI 346 >gi|251811149|ref|ZP_04825622.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|282875812|ref|ZP_06284679.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis SK135] gi|251805369|gb|EES58026.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis BCM-HMP0060] gi|281294837|gb|EFA87364.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis SK135] gi|329730651|gb|EGG67035.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU144] gi|329737423|gb|EGG73677.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU028] Length = 347 Score = 299 bits (765), Expect = 5e-79, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG + Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ + Sbjct: 238 TENE----KLKTDKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347 >gi|27468359|ref|NP_764996.1| riboflavin specific deaminase [Staphylococcus epidermidis ATCC 12228] gi|27315905|gb|AAO05040.1|AE016748_274 riboflavin specific deaminase [Staphylococcus epidermidis ATCC 12228] Length = 347 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG + Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ + Sbjct: 238 TENE----KLKTNKSFIKIISISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347 >gi|255532071|ref|YP_003092443.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM 2366] gi|255345055|gb|ACU04381.1| riboflavin biosynthesis protein RibD [Pedobacter heparinus DSM 2366] Length = 353 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 112/362 (30%), Positives = 169/362 (46%), Gaps = 32/362 (8%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---- 63 +M L + +G S NP V C+IV DG +IG G A G HAEV A+ Sbjct: 4 ELYMQRCLELAAMGMGNVSPNPMVGCVIVSDGKIIGEGYHARFGEAHAEVNAINSVVHNY 63 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 ATAYV+LEPC+H+G++PPCA +I+ I++VV+ DP V+G+G++ L Sbjct: 64 GNTAETLLAAATAYVSLEPCAHFGKTPPCADLLIKHRIKKVVIGNTDPFDGVNGKGIEKL 123 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI +V ++E+E + TR ++ +I LK A S + I+G Sbjct: 124 KNAGIEVVSGVLEAECSQLNRRFFTRIGQQHPYIILKWATSANGYFAPENTTQQWISGPE 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +K VH R + DA+LVG T +AD+P LT R +P+RI++D H ++ I Sbjct: 184 AKKLVHKWRTEEDAVLVGRLTAMADNPRLTVR--EWYGRNPVRIVVDRHLQVPSSHHIYN 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD---LKKLLTILVGRGVTSLLVEGG 295 A II E V ++NI+ I + +K+ L + S+++EGG Sbjct: 242 --KEAKTIIFNEQKTDV------QENIHFIQMEDMQHYLPQKIAFQLYLMDIASVIIEGG 293 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRRDYFGSDVCL 352 A V + FI +RL D ++RS + P E N + G D Sbjct: 294 AQVLNQFIQARLWDEARVFRS-------AVSWPAGIPSPELNLQSCAITDQFPIGKDQLT 346 Query: 353 EY 354 Y Sbjct: 347 IY 348 >gi|330685448|gb|EGG97103.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU121] Length = 347 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 170/354 (48%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +FM+ A++ ++ G T NP V ++VKDG ++G G G HAEVQAL+ A EA+ Sbjct: 3 KFMNYAIQLAQMVDGQTGVNPPVGSVVVKDGRIVGIGAHLRKGDKHAEVQALDMAQSEAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI++V+ V D + +G L GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVDKIIEAGIQKVIYAV--KDTTLISKGDDILKNAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + T + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNAVAAQLYQDFFTAKRNGIPELTVKVSASLDGKQATDDGESKWITNKDVKKDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+L G T+ ADDP T R+ P+R+IL KL ++ +P+ I Sbjct: 181 SHDAVLTGRKTIEADDPLYTTRI--ADGKHPIRVILSKSGKLDFGQQLFHDN-ASPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN + L N+ IIY + ++K +L L +G+ LLVE G + F+ S + Sbjct: 238 TENKN----LTVDNSNVTIIYMEQCEIKSILKDLYHKGIGKLLVEAGPEITSEFLQSDHL 293 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357 D ++LY + +IG G + + F V ++ L K Sbjct: 294 DHLVLYFAPKIIGGSGKNQFFQTDQIISLPDTTQFEIVNSTLIHQNIKLVLRKK 347 >gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC 43553] gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC 43553] Length = 383 Score = 298 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 179/364 (49%), Gaps = 16/364 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D +M AL + + T+ NP V C+IV+DG ++G G T G PHAE++AL Sbjct: 4 PSESDDIFWMRRALALAESVLYTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALR 63 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A E GAT YVTLEPCSH+GR+PPC ++ RVVV + DP+ V+G+GL Sbjct: 64 DAESRQEAVEGATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLAR 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L GI + + E E +++R + +K+A S D + S ITG Sbjct: 124 LRAAGIQVTTGVCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGP 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ H RA+S +L G+GT+L DDP L R P + ++D F + D+++ Sbjct: 184 EARADGHHWRARSCVVLTGMGTILKDDPLLNVR-GVQTPRQPRKAVVDGLFVIPEDARLF 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292 A VI+ T +D A +KN ++Y DL ++ + V Sbjct: 243 DGAQ---VIVFTAREDAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVHV 299 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSP-LEEGYLEKNFMCVRRDYFGSD 349 E GA ++ + + + VD ++LY + +++G+ + P LE + + + G+D Sbjct: 300 EAGAGLSGALVAAGCVDELLLYLAPVLLGDAAGMVRLPMLEHLDAARRYEFIDSTLVGAD 359 Query: 350 VCLE 353 V L Sbjct: 360 VRLR 363 >gi|329956196|ref|ZP_08296876.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056] gi|328524670|gb|EGF51731.1| riboflavin biosynthesis protein RibD [Bacteroides clarus YIT 12056] Length = 347 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 109/335 (32%), Positives = 169/335 (50%), Gaps = 18/335 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + + NP V ++V DG +IG G G HAEV A+ E Sbjct: 4 EKYMRRCIQLAQNGLCNAAPNPMVGAVVVCDGKIIGEGYHVRCGEAHAEVNAIRSVKEPS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSHYG++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHYGKTPPCADLIIEKQIPRIVIGCQDPFAKVAGRGIQKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182 + ++E E + + ++T R +ITLK A S D I G V ++ ++ Sbjct: 124 VTVGVLEQECRNLIRRFITFHTLHRPYITLKWAESADRYIDNFREGGKPVILSNPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ AI+VG T D+P LT R Q SP+RI++D KLS + + + Sbjct: 184 VHKKRAEHSAIMVGTRTAELDNPGLTVR--NWQGRSPVRIVIDRKQKLSPELHLFDGNVR 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ TE + NI I D R L +++ L +G+ SLLVEGG + Sbjct: 242 --TLVFTEKPHS------PQSNIEYIPIDFRQNILPQIMEYLYAQGLQSLLVEGGNILLQ 293 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 SFI++ L D + S ++ G+ +P + Sbjct: 294 SFIDAELWDEAFVEESPSMLFS-GVKAPEIGDKIP 327 >gi|313680606|ref|YP_004058345.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oceanithermus profundus DSM 14977] gi|313153321|gb|ADR37172.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oceanithermus profundus DSM 14977] Length = 380 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 117/375 (31%), Positives = 178/375 (47%), Gaps = 23/375 (6%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S D RFM AL + G TS NP V ++V G ++G G G PHAEV AL Sbjct: 1 MSFSDPDRRFMQRALALAERARGHTSPNPIVGAVVVSGGRIVGEGFHPRAGEPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ARGAT YVTLEPC+H+GR+PPC+ ++E G+ RVV DP SG G + L Sbjct: 61 RQAGEAARGATVYVTLEPCNHHGRTPPCSLALLEAGVSRVVYAAADPG-ETSGGGAERLR 119 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + G+ + ++E E ++ A+ R + K A++ D + G G ++ +S Sbjct: 120 RAGVRVEAGLLEEEARVQNRAFFHAAAFGRPFVLWKAALTLDGRVAARGRGGEAVSNTLS 179 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------HSPMRIILDPHFK 229 H R A+ VG GTV ADDP LT R + P++++ D K Sbjct: 180 HRVAHGYRQACAAVAVGAGTVRADDPALTVRAPDFRAFAAMVEPPPLRDPLKVVFDSQAK 239 Query: 230 LSLDSKII----KTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTI 281 +++ + ++ V E+ D A ++ ++ L Sbjct: 240 TPPSARLFEPGPRGEPARVLVFVGEDADADRVQALEAAGAEVVSLPAGEGGLSVEAALAE 299 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK--NF 338 L RGV SLL+EGG +A SF+ + VD + + ++GEG G+ G +++ F Sbjct: 300 LYRRGVDSLLLEGGPRLAGSFVRAGRVDRAAFFVAPRILGEGRGLIEGFSFGSMQRAMRF 359 Query: 339 MCVRRDYFGSDVCLE 353 + R + D+ LE Sbjct: 360 LPERSEVLEGDLWLE 374 >gi|329735920|gb|EGG72197.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis VCU045] Length = 347 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG + Sbjct: 3 RFMDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQ 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GAT YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 63 GATIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + T + + +T+K++ S D S IT K V+ LR Sbjct: 121 QYNENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I Sbjct: 181 EHDAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 TEN+ L K I II D +L L RG+ LLVE G + F+ S+ + Sbjct: 238 TENE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHL 293 Query: 309 DSIILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ L+ K Sbjct: 294 NELILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 347 >gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis Bt4] Length = 306 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 108/306 (35%), Positives = 156/306 (50%), Gaps = 9/306 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKD +VIG G T G HAEVQAL++ Sbjct: 2 FSENDFTHMQRALALAARGMYTTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGNDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLAHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLTARLLE 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEG 294 L + A A R + I+ DL +L L RG+ L VE Sbjct: 241 GGSLLIFCGALDAQSEARAQALRARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEA 300 Query: 295 GAAVAH 300 G + Sbjct: 301 GHKLNG 306 >gi|284107199|ref|ZP_06386340.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp. WGA-A3] gi|283829946|gb|EFC34225.1| riboflavin biosynthesis protein RibD [Candidatus Poribacteria sp. WGA-A3] Length = 362 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 114/341 (33%), Positives = 175/341 (51%), Gaps = 19/341 (5%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG-RSPPC 88 V +IV DG V+G G G PHAE+ AL +A +RGAT Y TLEPC H R+PPC Sbjct: 1 MVGAVIVADGAVVGAGYHRRAGGPHAEIVALRQARTRSRGATLYTTLEPCCHTNKRTPPC 60 Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147 I+ G+RR+V+ + DP+V+V+GRG++ L + G+ + + E YL Sbjct: 61 VPAILASGVRRIVLAMRDPNVQVAGRGIRQLRRAGLSVDVGCLGKEAAQLNEVYLHWMKT 120 Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR + LK A++ D I A S ITG ++ VH LR+Q D I VG+ TVL DDP+L Sbjct: 121 KRPFVVLKAAMTLDGKIATASGESQWITGAKARAHVHQLRSQVDVIAVGVETVLKDDPQL 180 Query: 208 TCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAFR 261 T RL+G Q P+R+I+D + +++++ AP +I T P R Sbjct: 181 TVRLSGGQRSATGVRQPVRLIVDSRLRTPYKARVLQGIEQAPTVIATTKLAGPRKVERLR 240 Query: 262 KKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 K + ++ + L K L L G+ S+L+EGG+ + +F+ + LV+ + LY + Sbjct: 241 KMGVQVLVLPRKGNRVSLDKCLQALGNMGIVSMLLEGGSELNAAFLRAGLVNRVALYVAP 300 Query: 318 IVIGEG------GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 ++G G PSP + ++ G D+ + Sbjct: 301 SLLGGQLTKGLLGGPSPGRLAEILP-VSNLQVQTLGEDMLV 340 >gi|239939894|ref|ZP_04691831.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus NRRL 15998] gi|239986380|ref|ZP_04707044.1| putative riboflavin/cytosine deaminase [Streptomyces roseosporus NRRL 11379] gi|291443327|ref|ZP_06582717.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL 15998] gi|291346274|gb|EFE73178.1| riboflavin biosynthesis protein RibD [Streptomyces roseosporus NRRL 15998] Length = 366 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 118/363 (32%), Positives = 177/363 (48%), Gaps = 16/363 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP+ + G L Sbjct: 63 ADDRARGGTAYVTLEPCNHTGRTGPCVQALLAAGISRVVYAVGDPNP-QATGGGDTLRAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVQVEQGLLAEEAGAGNAAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH-FKLSLDSKIIKTA 240 VH LRA++DA+LVG GT DDP+L R P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLGVR-GIDGATQPLRVVVDTNAAAVKPGARVLD-- 238 Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP +I +D P L + DL LL L RGV S+L+EGG + Sbjct: 239 ATAPTLIAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLESLHTRGVRSVLLEGGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLE 353 A +F+ + VD ++ Y + +++G G P+ L + + +R D G D+ + Sbjct: 299 AGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTISQALRLDVTETVAIGPDLRVT 356 Query: 354 YIG 356 + Sbjct: 357 AVP 359 >gi|302333432|gb|ADL23625.1| bifunctional pyrimidine reductase / riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus JKD6159] Length = 343 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 112/352 (31%), Positives = 164/352 (46%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ + G T NP V ++VK+G ++G G G HAEVQAL+ A + A GA Sbjct: 1 MDYAIQLANMVQGQTGVNPPVGAVVVKEGRIVGIGAHLRKGNKHAEVQALDMAQQNAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T Y+TLEPCSH+G +PPC II+C I +VV D + G L GI V+ + Sbjct: 61 TIYITLEPCSHFGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDDTLRAHGIEVECVD 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + + + ++ IT+K++ S D S IT K V+ LR + Sbjct: 119 DERASQLYQDFFKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+L G TV DDP+ T R+ +P+++IL + + +I + + I TE Sbjct: 179 DAVLTGRRTVELDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TLIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N + L + +I IIY DL +L L RGV +LLVE G F+ S +D Sbjct: 236 NPN----LTTNQTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ILY + +IG G + E F V + +V L K Sbjct: 292 FILYYAPKLIGGSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 343 >gi|332827503|gb|EGK00249.1| riboflavin biosynthesis protein RibD [Dysgonomonas gadei ATCC BAA-286] Length = 355 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 169/337 (50%), Gaps = 19/337 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M L+ ++ G TS NP V +IV G +IG G G HAEV A+ ++A Sbjct: 5 EKYMYRCLQLAQNGRGFTSPNPMVGAVIVHQGKIIGEGYHRQYGKAHAEVNAVNSVKDKA 64 Query: 68 --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YV+LEPCSH+G++PPCAQ II+ I +VVV DP VSGRG++ L +GI Sbjct: 65 LLKDSTIYVSLEPCSHHGKTPPCAQLIIDNQIPKVVVACLDPYPAVSGRGIKMLQDRGIE 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPITGFIS 179 + ++E E + + T Q R +I LK A +QD I C PI+ S Sbjct: 125 VSVGVLEKEAQALNRVFFTAQTRNRPYIYLKWAQTQDGFIDKERCDGEKPQPTPISNEFS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH RA++ I++G T + D+P LT R +P+RII+D ++ ++ Sbjct: 185 RMLVHKKRAETAGIMIGTNTAVNDNPSLTTRF--WYGKNPVRIIIDRQGRIPSGYQLFD- 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAA 297 II TE D + ++ I D + + + +IL + S+LVEGG Sbjct: 242 -GKVKTIIFTEKD----LYEKQSDSVIYIRTDFNESLFENIFSILKSHKIDSVLVEGGRE 296 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + S I+ ++ D + S G G+ +P GY+ Sbjct: 297 LLQSLIDIQMWDEAYIETSNACFG-KGVKAPDIRGYV 332 >gi|86142849|ref|ZP_01061288.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis MED217] gi|85830881|gb|EAQ49339.1| riboflavin biosynthesis protein RibD [Leeuwenhoekiella blandensis MED217] Length = 343 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 113/352 (32%), Positives = 172/352 (48%), Gaps = 22/352 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68 MS L+ ++ +G T NP V +IV + +IG G G PHAEV A+ ++ Sbjct: 1 MSRCLQLAKNGLGNTYPNPMVGSVIVYEDRIIGEGWHQQAGQPHAEVNAVNSVNDQSLLD 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 AT YV+LEPCSH+G++PPC+ II GI++VV+ DP V+GRG++ L G ++ Sbjct: 61 KATIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVIGTVDPFAEVAGRGIKKLIDAGCEVLV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPITGFISKNQ 182 ++E E + + T +KR +I LK A S D I + V IT SK Sbjct: 121 GVLEQECQQLNKRFFTFHQKKRPYIILKWAESLDGFIAPEAKSRSSREPVWITNSYSKQL 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ +ILVG TV AD+P LT R SP RI+LD K+S +S++ + Sbjct: 181 VHKWRAEEQSILVGTKTVEADNPSLTTR--DWSGKSPTRIVLDRELKISEESRVFDES-- 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A ++ TE K I + + + ++L L G+ S+++EGG+ +F Sbjct: 237 ATTLVFTE---KTKESTSSTKYITVDFNKNL-ITEVLQTLYKEGLQSVIIEGGSTTLQNF 292 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 I+ L D +++ GI +P N +R D + Y Sbjct: 293 IDQELWDEARVFKG-KQNFHNGISAP-----KLSNAQPIRSSQLTGDHLVYY 338 >gi|320108304|ref|YP_004183894.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4] gi|319926825|gb|ADV83900.1| riboflavin biosynthesis protein RibD [Terriglobus saanensis SP1PR4] Length = 397 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 180/340 (52%), Gaps = 15/340 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D R M AL +R GL S NP V C++ ++G+G Y HAE+ AL+ Sbjct: 4 TFTEIDRRHMEQALTLARATSGLASPNPQVGCVLAHGEEIVGQGAHRYVARDHAEIVALK 63 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +A +A+GATAYVTLEPCSH+GR+ PCA +IE G+ RVV DP+ +VSG G+ + Q Sbjct: 64 QADGKAKGATAYVTLEPCSHHGRTGPCANALIEAGVARVVAATLDPNPKVSGSGMARIEQ 123 Query: 122 KGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-----GMAGCGSVPIT 175 GI+ ++E + + A+ + ++ +TLK A+S D + G +T Sbjct: 124 AGIVAQHGLLEEQARAMNDAFAHYILTRQPLVTLKSALSVDGKLAPLPANRIGNSPFWLT 183 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 G ++ +VH LR +DAIL G+GT++ADDP LT R N + RI+LD H +L L ++ Sbjct: 184 GTAAREEVHRLRHSNDAILTGVGTLIADDPLLTDRSNLPRRRPLQRIVLDTHLRLPLTAR 243 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIY---------CDCRDLKKLLTILVGRG 286 I+ T +I+ + R + + + D+ L +L Sbjct: 244 ILDTINDDLIILCSARAPDETQKHLRTLGVRVEHVSEILTKRGTHELDIPGTLKLLGTFD 303 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + S+L+E G ++ +F+++ +VD +L+ ++ +G +P Sbjct: 304 LLSVLLEAGPSLNTAFLDADMVDKAVLFFAETELGNDALP 343 >gi|256819357|ref|YP_003140636.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM 7271] gi|256580940|gb|ACU92075.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea DSM 7271] Length = 331 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 97/337 (28%), Positives = 159/337 (47%), Gaps = 16/337 (4%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 M S D +M ++ + +G T NP V +IV +G +IG G G HAEV+ Sbjct: 1 MTTSELTIDEWYMRRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60 Query: 59 ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ ++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G+ Sbjct: 61 AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--- 172 + L G ++ + E+E + + T + R +I LK A ++D I V Sbjct: 121 EKLRNAGCEVIVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP + Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + + + I + L+++ L + S++V Sbjct: 239 EFAVWNDRTTT-----LFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 EGGA FI+ L D +++ I GE G+ +P+ Sbjct: 294 EGGAYTLQQFIDEGLWDEAVVFTGDICFGE-GVKAPI 329 >gi|330466988|ref|YP_004404731.1| riboflavin biosynthesis protein ribd [Verrucosispora maris AB-18-032] gi|328809959|gb|AEB44131.1| riboflavin biosynthesis protein ribd [Verrucosispora maris AB-18-032] Length = 353 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 119/367 (32%), Positives = 180/367 (49%), Gaps = 28/367 (7%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M S D M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ A Sbjct: 1 MASVSVDEA-MRRAIELAARGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVA 59 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG A+G TA VTLEPC H GR+ PC+ +++ + RVV+ V DP V+ G L Sbjct: 60 LAQAGHRAKGGTAVVTLEPCDHTGRTGPCSDALVQAQVARVVIAVPDPTP-VAAGGAATL 118 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + + +E + A+LT ++ K A + D A S+ IT Sbjct: 119 RAAGIRVDLGVRATEAENGNVAWLTAMRRGWPYVIWKYAATLDGRSAAADGTSMWITSEA 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LRA DA++VG+GTVLADDP LT R L P+R+++D + LD++ Sbjct: 179 ARMDVHALRATVDAVIVGVGTVLADDPRLTVRNLRDGSLAIRQPLRVVVDSAGRTPLDAQ 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I A A I T + DL LL L +GV ++L+EGG Sbjct: 239 IRDAA--ARTWIAT------------AAEVGAGPDGGVDLPALLAALHAKGVRAVLLEGG 284 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDV 350 +A +F+ + LVD ++ Y + ++G G P+ L + + + G D+ Sbjct: 285 PKLAGAFLAAGLVDRVVGYLAPRLLGAG--PAALVDAGVTTIAEAIDLEITDVTQIGPDL 342 Query: 351 CLEYIGK 357 + + + Sbjct: 343 RITALPR 349 >gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae] Length = 360 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 113/356 (31%), Positives = 174/356 (48%), Gaps = 18/356 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ AL + + T+ NP V C+IVK G++IG G T G HAEV+A+++A G E Sbjct: 1 MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGATAYVTLEPCSHYGR+PPCA+ ++E GI P+ VSGRG L + GI + Sbjct: 61 RGATAYVTLEPCSHYGRTPPCAKGLVEAGIAP-WCGDGGPEPAVSGRGYAMLREAGIEVR 119 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + +++R R + +K+A S D + S ITG ++ H Sbjct: 120 GGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHAW 179 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++ +IL GIGTV DDP+L R P R+++D L +++++ A P++ Sbjct: 180 RARACSILTGIGTVRRDDPQLNVR-GIDTPRQPRRVLIDARLDLPHEARLM--AGPPPLV 236 Query: 247 IVTENDDPVLALAFRKKNINIIYC------DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 E D A A + DL +L L GRG L VE G ++ Sbjct: 237 FCGELDASARARADALRRRGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEAGRTLSG 296 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCL 352 + + + LVD +++Y + ++G + + G D+ + Sbjct: 297 ALLRAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDLRI 352 >gi|189485534|ref|YP_001956475.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287493|dbj|BAG14014.1| riboflavin biosynthesis protein RibD [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 355 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 169/353 (47%), Gaps = 16/353 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++M AL ++ G TNP V C+IVKD ++GRG G HAEV A+ +AG+ A Sbjct: 5 KYMQLALDLAQKGKGRVYTNPLVGCVIVKDNKIVGRGWHQCFGGNHAEVNAIIDAGKNAE 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GA YVTLEPC+ YG+ PC II+ GI+RV V D +V + L + I V Sbjct: 65 GADLYVTLEPCNSYGKRTPCTLTIIKAGIKRVYYAVPDSNVSGGR---EILERNNIKVHE 121 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + L + ++ + +++K A++ D I S IT S+N VH +RA Sbjct: 122 GLLKKQSRILIKDYLKHLKNKPKVSIKAAMTLDGKIATYEYDSKWITSEKSRNFVHKMRA 181 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+LVG+ T L D+P LT L +P+R+++D KL + P +IV Sbjct: 182 RYDAVLVGMNTALKDNPILTTHSKNL--KNPIRVVIDSGLKLPKSHHLFD--ACVPTVIV 237 Query: 249 TENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + + ++ I + I +D ++ L + +L+EGG+ + S + Sbjct: 238 YDLNITNIPKYLNREGIILSPVNIDAAKKDFSVIIKKLDSLSIKRILIEGGSEIIASALF 297 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 S +VD I + + + G S + ++K ++ G D+ + Sbjct: 298 SDVVDDIYFFIAPKITGGRTAISVVGGTGVKKMSESLCIKNMKVKKIGPDLLI 350 >gi|171915861|ref|ZP_02931331.1| riboflavin biosynthesis protein RibD [Verrucomicrobium spinosum DSM 4136] Length = 354 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 161/360 (44%), Gaps = 32/360 (8%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 D ++M AL +R +GLTS NP+V ++V +G +IG+G G PHAEV+AL A Sbjct: 4 PEDEKWMRLALAEARRGIGLTSPNPAVGAVLVNEGRLIGQGWHHRVGQPHAEVEALRNAE 63 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 G E RGATAYVTLEPCS +GR+ C + + G+ RVV DP+ +G + L Sbjct: 64 ANGHGAEIRGATAYVTLEPCSTHGRTGACTVALAKAGVSRVVYGATDPNPGHAGAADRLL 123 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI ++ ++ E + L + ++ K S D + S IT + Sbjct: 124 QEAGIAVLSGVLREECEEVLRPFAKWITTGLPYVVAKAGQSLDGRLTRPPGESQWITSEV 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKI 236 S+ LR QSDAIL+G T+ D+P LT R + + E P R+++ L + + Sbjct: 184 SRAHAMQLRVQSDAILIGAETLRRDNPRLTLRGDAVPEGKIQPWRVVVTRGGDLPRGANL 243 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 +++ R ++L L RG+TSLL+E G Sbjct: 244 FNDEFKERTLVLEGE---------------------RCFPEILQELAARGITSLLLESGG 282 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353 + + VD + Y + + G G + G R + GSDVC+ Sbjct: 283 NLLGQAFAAGAVDEVCWYIAPRICGGGTMAVGGLDFALGAKSVELEKARVEVLGSDVCVR 342 >gi|238063934|ref|ZP_04608643.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC 39149] gi|237885745|gb|EEP74573.1| riboflavin biosynthesis protein ribD [Micromonospora sp. ATCC 39149] Length = 353 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 175/365 (47%), Gaps = 27/365 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 VS DA M A+ + +G TS NP V C+++ DG V+G G AY G PHAE+ AL Sbjct: 3 SVSVDDA--MRRAIALATRGLGTTSPNPVVGCVLLDADGEVVGEGFHAYAGGPHAEIVAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AG ARG TA VTLEPC H GR PC+ +I G+ RVV+ V DP+ SG + Sbjct: 61 AQAGRRARGGTAVVTLEPCDHTGRPGPCSHALIAAGVARVVIAVPDPNPVASGGAATLRA 120 Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + + +E + A+LT ++T K A + D A S+ IT ++ Sbjct: 121 GGLDVEVGVRAAEAEAGNVAWLTSMRRGWPYVTWKYAATLDGRSAAADGTSMWITSEAAR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTC---RLNGLQEHSPMRIILDPHFKLSLDSKII 237 VH LR DA++ G+GTVLADDP LT R L P+R+++D + D+++ Sbjct: 181 IDVHALRGTVDAVIAGVGTVLADDPRLTARNLRDGTLAIRQPLRVVVDTFGRTPADARVR 240 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A A + T + DL LL L RGV + L+EGG Sbjct: 241 DGA--ARTWVAT------------AAEVGAGPDGRVDLPALLAELHHRGVRAALLEGGPK 286 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 +A +F+ + LVD ++ Y + ++G G P+ L + + + G D+ + Sbjct: 287 LAGAFLAAGLVDRVVGYVAPKLLGAG--PTALADAGVTTIADAIDLEITDVTQVGPDLRI 344 Query: 353 EYIGK 357 + + Sbjct: 345 TALPR 349 >gi|319955752|ref|YP_004167019.1| riboflavin biosynthesis protein ribd [Cellulophaga algicola DSM 14237] gi|319424412|gb|ADV51521.1| riboflavin biosynthesis protein RibD [Cellulophaga algicola DSM 14237] Length = 351 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 177/350 (50%), Gaps = 20/350 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++ ++ ++ +G T+ NP V +IV + +IG G T+ G PHAEV A+ ++ Sbjct: 5 EFYILRCIQIAQNGLGTTAPNPMVGAVIVHENKIIGEGYTSPYGGPHAEVNAINAVADKN 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 AT YVTLEPCSH+G++PPCA II+ I+ VVV + DP +V+G+G+Q L G Sbjct: 65 LLVNATIYVTLEPCSHHGKTPPCADLIIKHKIKNVVVGLLDPHEKVAGQGIQKLKDAGCT 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG------MAGCGSVPITGFI 178 + ++E+E + +LT Q + R +I LK A + D I IT Sbjct: 125 VTVGVLENECREHHKRFLTFQEKNRPYIILKWAETADGFIAPELALRTKEKQPFWITNTY 184 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ VH RA+ AILVG TVLAD+P+L R +P RIILD + K++ ++ Sbjct: 185 SRQLVHQWRAEEQAILVGTHTVLADNPKLDVR--SWTGKNPTRIILDRNLKINTTFHVVD 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCD-CRDLK-KLLTILVGRGVTSLLVEGGA 296 II TE +L + + + I D +++ ++ T L + + S+++EGG Sbjct: 243 --KSIKTIIFTE----ILEESRYQSEVIYIPIDFKKNIASQICTALYLQNIQSVIIEGGL 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 +FI L D +++ + + G+ +P+ K + +D Sbjct: 297 QTLQTFIAENLWDEARIFKGNSLF-KRGVKAPIIATRTLKETRNIEKDIL 345 >gi|83815727|ref|YP_446405.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855] gi|83757121|gb|ABC45234.1| riboflavin biosynthesis protein RibD [Salinibacter ruber DSM 13855] Length = 373 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 169/374 (45%), Gaps = 27/374 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66 +M L +R G S NP V +++ DG V+G G G PHAE +AL+ A ++ Sbjct: 3 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 62 Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G Sbjct: 63 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + + E + A+ R +TLK A + D I S ITG ++ Sbjct: 123 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ D ILVG GT DDP LT R + P+R++LD LS D + A Sbjct: 183 VHQWRAELDGILVGRGTAAHDDPRLTVR--HVDGPQPLRLVLDRKGTLSPDRTLFTDAHA 240 Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDC-----RDLKKLLTILV------GRGVTS 289 + V +D P A + I+ DL LL L + S Sbjct: 241 DDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQS 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345 LLVE G +A + LVD + + V+G+ G P+ + G E + F Sbjct: 301 LLVEAGPGLATALFRQDLVDRFFCFVAPKVLGD-GRPALHDLGITEMDGALTFAEQAWAT 359 Query: 346 FGSDVCLEYIGKNL 359 G+DV L + + Sbjct: 360 VGADVLLRGYRRTV 373 >gi|312623117|ref|YP_004024730.1| riboflavin biosynthesis protein ribd [Caldicellulosiruptor kronotskyensis 2002] gi|312203584|gb|ADQ46911.1| riboflavin biosynthesis protein RibD [Caldicellulosiruptor kronotskyensis 2002] Length = 371 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 165/344 (47%), Gaps = 12/344 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 +M+ AL ++ L NP V C+IVK+G VIG+G G HAEV A+E+A G Sbjct: 8 YYMNMALELAKEASPLVLPNPRVGCVIVKNGTVIGKGYHQKYGEKHAEVLAIEDAIKNGY 67 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC HYG+ PC + II+ GI+RVV+ DP+ V+G+G+Q L Q G Sbjct: 68 LLKNSTMYVTLEPCCHYGKQLPCTEAIIKSGIKRVVIATKDPNPLVNGKGIQILKQHGTE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ +++ E + + +I +K+A S D I + VH Sbjct: 128 VIEGVLQKEAESINKDFFKYMKTGIPYIAIKVAQSIDGKIAIPSNKRFLFNTEEENVFVH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR + A LV + TV++D+P L R G P+R++LD ++ L+ I+KT+ Sbjct: 188 SLRQKYMATLVSVNTVISDNPILNARY-GQIVRQPIRVVLDSKLRIPLECNIVKTSDKYS 246 Query: 245 VIIVTEN--DDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAA 297 IV +D +K I II+ DL L + + S+LVEGG+ Sbjct: 247 TYIVCSENVNDTQKIELLSQKGIKIIFAKSSEDGHLDLLDTFLKLAQQKIVSVLVEGGSL 306 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + S + R+ D + IG + E+ F + Sbjct: 307 LNFSLLKQRIADYWYSLIFNVFIGGQNTKGAVGGEGFEQFFPKL 350 >gi|185535483|gb|ACC77864.1| riboflavin biosynthesis protein [Staphylococcus xylosus] Length = 347 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 173/354 (48%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +++ A++ ++ G T NP V ++V DG ++G G G HAEVQAL+ A + AR Sbjct: 3 HYLNYAIQLAKMVEGQTGLNPPVGSVVVNDGRIVGMGAHLQKGGKHAEVQALDMAQDNAR 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T Y++LEPC+HYG +PPC IIE GI++VV V D + G L Q GI V Sbjct: 63 GGTIYISLEPCTHYGSTPPCVNKIIEAGIKKVVYAV--KDTTLPSEGDDILEQAGIEVIF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +S+ + + + E +T+K++ S D S IT KN V LR Sbjct: 121 RSQSDAESLYRDFFMAKNESIPEVTVKVSCSLDGKQATDKGESKWITNKAVKNDVFHLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DA+L G GT+ AD+P+ T R+ + P+++IL ++ + I + P+ I Sbjct: 181 KHDAVLTGRGTIHADNPQYTTRIE--EGKHPIKVILSKTGEIDFNLDIFQLRNE-PIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T+N + L +++ II ++ +L L RG+ S+LVE G V F+ S+ Sbjct: 238 TQNKN----LKTNIEHVEIIALTDCSIENILKDLYQRGIGSVLVEAGPTVTSEFLESKFT 293 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357 + +ILY + +IG G + + F V ++ LE K Sbjct: 294 NELILYYAPKIIGGSGNYQFFQSESIFNLSEVPQFEIVNSQMLEQNIKLELRKK 347 >gi|325953844|ref|YP_004237504.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922] gi|323436462|gb|ADX66926.1| riboflavin biosynthesis protein RibD [Weeksella virosa DSM 16922] Length = 345 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 106/358 (29%), Positives = 165/358 (46%), Gaps = 18/358 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M+ L+ + +G T NP V +IV + +IG G T++ G PHAEV A+ Sbjct: 1 MTQDRTDEFYMNRCLQLAANGLGNTYPNPFVGSVIVHNQNIIGEGFTSFYGGPHAEVNAI 60 Query: 61 EEA--GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E +T YVTLEPC+H+G++PPC+ IIE I RVVV DP V+G G+ Sbjct: 61 HSVEKKELLPSSTLYVTLEPCAHFGKTPPCSDLIIEHKIPRVVVGCLDPFALVNGEGINR 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + GI + ++E E + T +KR ++ LK A + + I+ Sbjct: 121 MRTHGIEVSVGILEKECLELNRRFFTIHQKKRPYVILKWAQTANGYFAPKNHTQQWISNR 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 SK VH R Q AILVG T + D+P+L RL +Q +P+R+++D + Sbjct: 181 FSKQLVHWWRTQEQAILVGKNTAIVDNPQLNSRL--VQGRNPIRVLIDYDLSTPTTHYLF 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 L P II + V + +L+++L IL + + S+++EGG+ Sbjct: 239 DQTL--PTIIF----NKVKGGKNELIEYIQLQSKENNLEEILRILYQKNIQSIIIEGGSR 292 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +FI L D ++ S V E GI +P + + +D Y Sbjct: 293 TLQTFIEQNLWDEARVFSSSTV-WEDGIFAP------HLHKKPSKTQIIDNDFLRIYR 343 >gi|301308353|ref|ZP_07214307.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3] gi|300833823|gb|EFK64439.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 20_3] Length = 359 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 172/336 (51%), Gaps = 16/336 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E + A++T Q + R +I LK A S+D I ++ Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 ++ + +I TE + I + ++++L L R + SLLVEGG Sbjct: 239 LLN--GFSRTLIFTEKE----VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 A + +SF+ + + D + + + + + G+ +P+ Sbjct: 293 AQLINSFVEADVWDEVRVETAPVRL-YQGVHAPMLG 327 >gi|262196460|ref|YP_003267669.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM 14365] gi|262079807|gb|ACY15776.1| riboflavin biosynthesis protein RibD [Haliangium ochraceum DSM 14365] Length = 367 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 164/350 (46%), Gaps = 13/350 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+ L +R G T+ NP V C+IV G VI G G PHAE +AL + A G Sbjct: 1 MARCLELARRAEGRTAPNPMVGCVIVAPSGEVIAEGYHRRAGAPHAEAEALAQLDGRAPG 60 Query: 70 ATAYVTLEPCSHYG--RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 T YV LEPC H R+ PCA + E GI R+VV + DP +G Q + Sbjct: 61 CTMYVNLEPCRHRRKRRTVPCAPAVAEAGIARLVVGMGDPIRSHAGGAAWLARQGVSVTR 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ ++ + ++TR + R LK A++ D + S ITG ++ H LR Sbjct: 121 GVLRADCRDLNRGFITRARKGRPWFALKAAMTLDGKVATRTGDSQWITGPQARAHGHGLR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII--KTALLAPV 245 + DA+LVGIGTVLADDP LT R P+R+++D + LD++++ T+ A Sbjct: 181 DRLDAMLVGIGTVLADDPRLTAR-GARDARDPVRVVVDSRLRTPLDARLLPANTSSPART 239 Query: 246 IIVTENDDPV-LALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 II P + DL+ L L + ++LVEGGA + + Sbjct: 240 IIAASERAPRTRERRLADAGAEVWRVGAGPRVDLEALAQRLAAAELNTVLVEGGAELHAA 299 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGS 348 F+ + L D ++LY + +V+G G S L +E+ R + G Sbjct: 300 FVAADLADELLLYVAPMVLGGRGRDSGLGWLGGAGVERLADATRFSFRGD 349 >gi|159898944|ref|YP_001545191.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus ATCC 23779] gi|159891983|gb|ABX05063.1| riboflavin biosynthesis protein RibD [Herpetosiphon aurantiacus ATCC 23779] Length = 371 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 121/349 (34%), Positives = 174/349 (49%), Gaps = 16/349 (4%) Query: 23 GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHY 82 G TS NP+V ++V+ G ++GRG T G HAEV AL EAGE+ARGA+ YVTLEPC+ + Sbjct: 22 GRTSPNPAVGAVVVQAGQIVGRGHTQPAGQAHAEVMALREAGEQARGASLYVTLEPCTIW 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI--FLHA 140 GR+PPC II GI V++ DP+ R L GI V E E A Sbjct: 82 GRTPPCTDAIIAAGIAEVIIASRDPNPRFEHDAATVLQAAGIRVGFAPEYEAAAIGQTEA 141 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + V K+ +T+K A+S D I + I+G S+ +VH LR Q+DAILVGI TV Sbjct: 142 FRHWIVTKQPFVTVKYAMSLDGKIATRTGDARWISGPASRQKVHELRDQTDAILVGINTV 201 Query: 201 LADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LADDP LT RL P+R++LD ++ + ++ A+ II T Sbjct: 202 LADDPLLTTRLEQHWRPVQHPVRVVLDARGRMPASAAMLADAVPGSTIIATTAAASAAWR 261 Query: 259 AFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 A N I+ + LL L RG++SL+VEGG +F+ ++ V + + Sbjct: 262 ASLN-NAEILELPSNLEGRVSIPALLNELGQRGISSLMVEGGGETIAAFLAAQAVQKVQV 320 Query: 314 YRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGK 357 + +IG G PSP+ + + + + G+D+ L Sbjct: 321 VIAPKIIG-GVAPSPVAGVGIARMSEAQLWQVRSSEQIGADIWLTAYPN 368 >gi|78185053|ref|YP_377488.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9902] gi|78169347|gb|ABB26444.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CC9902] Length = 349 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 110/354 (31%), Positives = 176/354 (49%), Gaps = 12/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G TS NP V +++ G ++G G A G PHAEV AL +AG+ A+G Sbjct: 1 MRRALALAALADGHTSPNPLVGAVVLDQHGCLVGEGFHARAGEPHAEVGALAQAGDRAKG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T VTLEPC H+G +PPCA +++ GI RVV+ ++DPD RV+G G+ L G+ ++ Sbjct: 61 GTLVVTLEPCCHHGLTPPCADAVLKAGIHRVVIALEDPDPRVAGGGIARLRSAGLEVMSG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++++E A+L R R TLK A+ D + S I+G +++ VH LR+ Sbjct: 121 VLQAEAVFQNRAFLHRVRTGRPWGTLKWAMGLDGRNALTNGESQWISGPMARQWVHQLRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +SDA++VG GTV DDP LT R G + P+R++L +L +++ T LAP ++ Sbjct: 181 KSDAVIVGGGTVRTDDPLLTSR--GRRMPEPLRVVLSRSMELPELAQLWDTT-LAPTLVA 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 P + + + L+ L RG +L E G +A + I + Sbjct: 238 HG---PESQDRPFPSGPQRLLLSASEPEPLMQELANRGCNRVLWECGPELAAAAIRQGCI 294 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 + + ++G +PL + F + + GS + +G + Q Sbjct: 295 QDVAAVVAPKLMGGVPARTPLGDLG----FTAMDQVVAGSFLSPVPLGDDWLFQ 344 >gi|70726154|ref|YP_253068.1| riboflavin specific deaminase [Staphylococcus haemolyticus JCSC1435] gi|68446878|dbj|BAE04462.1| riboflavin specific deaminase [Staphylococcus haemolyticus JCSC1435] Length = 347 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 105/353 (29%), Positives = 169/353 (47%), Gaps = 14/353 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM A++ ++ G T NP V ++V +G ++G G G HAEVQAL+ AG+EA+G Sbjct: 4 FMEYAIQLAQMVKGQTGINPPVGAVVVNNGRIVGLGAHLKQGEKHAEVQALDMAGKEAKG 63 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 Y++LEPC+H+G +PPC IIE G+ +V+ V D + G L Q GI V+ Sbjct: 64 GIIYISLEPCTHFGSTPPCVNKIIEFGLSKVIYAV--KDTTLPSEGDAILEQAGIDVEYQ 121 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E + + + IT+K++VS D S IT K V+ LR Sbjct: 122 YSEEAAALYKDFFKAKSGQIPEITMKVSVSLDGKQATDLGQSKWITNSEVKQDVYHLRHT 181 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+L G GT+ AD+P T R+ +P+RI+L + ++ + + + V I T Sbjct: 182 HDAVLTGNGTINADNPLYTTRIP--NGKNPIRIVLAKSGNVDFTKQLFQDSS-SEVWIYT 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 EN L +NI +I D LK +L + RG+ SLL+E G + F+ + ++ Sbjct: 239 ENQ----TLESPNRNIKVICIDKCYLKDILKDIYKRGIGSLLIEAGPRITSKFLQTDFIN 294 Query: 310 SIILYRSQIVIGEGGI-----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +I+Y + +IG G + + + F + ++ + K Sbjct: 295 QLIIYYAPKIIGGSGKNQFYQTADIIDLNETTQFEISSTELINQNLKMILRKK 347 >gi|299822452|ref|ZP_07054338.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601] gi|299815981|gb|EFI83219.1| riboflavin biosynthesis protein RibD [Listeria grayi DSM 20601] Length = 394 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 113/363 (31%), Positives = 178/363 (49%), Gaps = 12/363 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65 ++M+ A++ +R G T NP V +IVK +IG+G A G HAEV A + E Sbjct: 27 EKWMAIAIKEARKGRGKTYKNPLVGAVIVKADRLIGKGYHASYGDVHAEVNAFQNVSNPE 86 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E + ++ YVTLEPC+H+G+ PPC + I+E GI V V D + V G+G+ +L GI Sbjct: 87 ETKHSSIYVTLEPCAHHGKQPPCCEKIVEMGIEHVYVAQLDSNPLVRGKGVAYLEAHGIK 146 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + A+ +R +TLK AV+ D + +T + V Sbjct: 147 VTIGVLEKEAEQLNPAFHFFHRHRRPLVTLKQAVTIDGKTNSSAASRTYLTDEKTSEDVQ 206 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR S AILVG TVL DDP LT R N + + P+RI+LD + + LA Sbjct: 207 QLRMGSQAILVGSETVLIDDPALTIRSNVVP-YPPVRIVLDRRGRTVDQKFQLWRDGLAE 265 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + T N+ + +++ + +K++ IL G+ SL +EGGAA+ +F+ Sbjct: 266 TWLFTGNEPDI----NFAEHVRVFVDPDWTTEKVIRILAEEGIQSLCIEGGAAIHDAFLA 321 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGK--NLC 360 + VD I+ Y + ++G P+ + + F + DV L Y + + C Sbjct: 322 AGKVDRIVSYVAPYLLGGNARPAVASKRQTDALTAFELSHVEQLKEDVKLVYHRREADKC 381 Query: 361 LQE 363 L E Sbjct: 382 LPE 384 >gi|294508343|ref|YP_003572401.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8] gi|294344671|emb|CBH25449.1| riboflavin biosynthesis protein RibD [Salinibacter ruber M8] Length = 397 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 169/374 (45%), Gaps = 27/374 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-- 66 +M L +R G S NP V +++ DG V+G G G PHAE +AL+ A ++ Sbjct: 27 WMKRCLDLARTGAGTVSPNPMVGAVLLAPDGTVLGEGAHRTYGGPHAEARALQAAEQQHS 86 Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + AT YV LEPC H+G++PPC I+E + RVVV DP + GRG++ L ++G Sbjct: 87 PAALQNATLYVNLEPCRHHGKTPPCTDLIVEKNVPRVVVGTVDPFPQAQGRGIRQLREQG 146 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + + E + A+ R +TLK A + D I S ITG ++ Sbjct: 147 VEVEVGVHEHACRRLNEAFFHHVDTGRPLVTLKTAQTLDGRIATRTGDSQWITGEAARTL 206 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ D ILVG GT DDP LT R + P+R++LD LS D + A Sbjct: 207 VHQWRAELDGILVGRGTAAHDDPRLTVR--HVDGPQPLRLVLDRKGTLSPDRTLFTDAHA 264 Query: 243 APVIIVTEND--DPVLALAFRKKNINIIYCDC-----RDLKKLLTILV------GRGVTS 289 + V +D P A + I+ DL LL L + S Sbjct: 265 DDTVAVVGDDRPRPDYAGPLTNRGGAILRVPETDDAHLDLHALLQRLGTDAGRDAEPLQS 324 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDY 345 LLVE G +A + LVD + + V+G+ G P+ + G E + F Sbjct: 325 LLVEAGPGLATALFRQDLVDRFFCFVAPKVLGD-GRPALHDLGITEMDGALTFAEQAWAT 383 Query: 346 FGSDVCLEYIGKNL 359 G+DV L + + Sbjct: 384 VGADVLLRGYRRTV 397 >gi|168057508|ref|XP_001780756.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667774|gb|EDQ54395.1| predicted protein [Physcomitrella patens subsp. patens] Length = 598 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 98/374 (26%), Positives = 171/374 (45%), Gaps = 20/374 (5%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SS D+R + A + GL++ +P+ C+I V+G G G AEVQA+E A Sbjct: 22 SSDDSRHLLRAAELAGSLAGLSAPHPNFGCVIAHGPKVVGEGFLYAQGTKSAEVQAVERA 81 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE A+ ATAY+ LEP +G + + E G+ RVVV V P + G+ ++ L Q G Sbjct: 82 GELAKNATAYLNLEPGDCHGDD-SAVRALREAGVSRVVVGVPHPLQHLHGKAIKALHQGG 140 Query: 124 IIVDRMME-------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170 V+ + + ++ L R + LK A++ D I + Sbjct: 141 AKVEVVGQNLLESGSGIQEAFKACQLVNAPLLYRAANGIPYSLLKYAMTVDGKIAASTGH 200 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230 S ++ S+ +V +RA+SDAI+VG TV D+P LT R G H P+RI++ L Sbjct: 201 STWVSSTESRKRVFEMRARSDAIVVGGNTVRRDNPRLTTRQEG--GHLPVRIVMSRCLNL 258 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 +D+ + + ++ + + + ++ D + ++ RG S+ Sbjct: 259 PMDANLWDVSTTQTIVTTQKGARQDFQALLASRGVEVVEFDFLTPRAVMDYCYNRGYLSI 318 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 L E G ++ I S ++ ++ + S +IG P+P+ E + + ++ SDV Sbjct: 319 LWECGGMLSAPAIASGVIQKVMAFISPKIIGGITAPTPVGELGMVEMTQALQL----SDV 374 Query: 351 CLEYIGKNLCLQEL 364 E +G ++ + L Sbjct: 375 AFEQVGPDMLVTGL 388 >gi|313207146|ref|YP_004046323.1| riboflavin biosynthesis protein ribd [Riemerella anatipestifer DSM 15868] gi|312446462|gb|ADQ82817.1| riboflavin biosynthesis protein RibD [Riemerella anatipestifer DSM 15868] gi|315022456|gb|EFT35483.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Riemerella anatipestifer RA-YM] gi|325335416|gb|ADZ11690.1| Pyrimidine deaminase [Riemerella anatipestifer RA-GD] Length = 339 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 171/327 (52%), Gaps = 15/327 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +++S + + G T NP V +IV +GI+IG G G PHAE+ A+ + Sbjct: 4 EKYISRCIALAEKARGNTYPNPLVGAVIVHNGIIIGEGYHHKAGEPHAEINAINSVENKG 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YV+LEPCSH+GR+PPCA I E G ++VV+ D + +VSG+G + + GI Sbjct: 64 LLKESTIYVSLEPCSHFGRTPPCATKITEIGFKKVVIGSADSNEKVSGKGKAMIEEAGIE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +VD+++E + + T +KR +I LK A S D I PI+ ++ VH Sbjct: 124 VVDKVLEERCRWLNRRFFTFHEKKRPYIILKWAESNDGFID-RNFVPTPISNTLASQYVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +RA+ AILVG T L D+P L R L +P R+++D K+ I T AP Sbjct: 183 KMRAEEHAILVGTQTALNDNPTLDVR--HLDGRNPTRVLIDLELKVPQSFNIFNTN--AP 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 II L + ++ I D + L++L+ L + + S+++EGG+ + ++FI Sbjct: 239 TIIFN------LHKNDNQDHLKWIKIDKENFLEELMYHLYEQQIQSIIIEGGSKMLNTFI 292 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLE 330 ++L D ++ ++ + G +P+ Sbjct: 293 EAQLWDEAVVIKAPNLTLNNGTKAPIF 319 >gi|242243028|ref|ZP_04797473.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis W23144] gi|242233486|gb|EES35798.1| possible diaminohydroxyphosphoribosylaminopyrimidine deaminase [Staphylococcus epidermidis W23144] Length = 343 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 169/352 (48%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +A+GA Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLKAQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 61 TIYVSLEPCTHHGSTPPCVDKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + T + + +T+K++ S D S IT K V+ LR + Sbjct: 119 NENAATLYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I TE Sbjct: 179 DAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKTGQLDFNQQIFKDT-ASEIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N+ L K I II D +L L RG+ LLVE G + F+ S+ ++ Sbjct: 236 NE----KLKTDKSFIKIINISKCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +ILY + +IG G + + F V ++ L+ K Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343 >gi|149372326|ref|ZP_01891514.1| riboflavin biosynthesis protein ribD [unidentified eubacterium SCB49] gi|149354716|gb|EDM43279.1| riboflavin biosynthesis protein ribD [unidentified eubacterium SCB49] Length = 340 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 164/332 (49%), Gaps = 34/332 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68 M ++ ++ +G T NP V +IV D +IG G G PHAEV A+ +E Sbjct: 1 MFRCIQLAKKGLGYTYPNPLVGSVIVVDDKIIGEGWHLEAGKPHAEVNAINSVTDEKLLE 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 AT YV+LEPCSH+G++PPCA I+ GI+ +V+ DP+ +V+G+G+ L Q G + Sbjct: 61 KATIYVSLEPCSHFGKTPPCADLIVTKGIKNIVIGSTDPNPKVAGKGIIKLMQAGCKVKV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVH 184 +++ E + T Q +KR +I LK A +QD I IT ++ +VH Sbjct: 121 GVLQKECDALNKRFFTFQTKKRPYIFLKWAETQDGFIAPKTRNEQAPVWITNKYARQRVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 +RA AIL+G T LAD+P LT R + +P+R+++D K+ + I A Sbjct: 181 QMRAAEQAILIGTNTALADNPSLTTR--DVIGSNPIRVLIDRQLKVPKTAAIFDE--QAK 236 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGAAVA 299 I++TE +N ++ +C D ++ +L + S++VEGGA Sbjct: 237 TIVITEKSA---------ENTETVHFECVDFNKPLAHQICEVLFKHEIESVIVEGGAQTL 287 Query: 300 HSFINSRLVDSIILY----------RSQIVIG 321 +FI+ L D +Y ++ + G Sbjct: 288 QTFISENLWDEAHIYKGAVSFTEGTKAPKING 319 >gi|315224801|ref|ZP_07866622.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea F0287] gi|314945204|gb|EFS97232.1| riboflavin biosynthesis protein RibD [Capnocytophaga ochracea F0287] Length = 331 Score = 296 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 157/339 (46%), Gaps = 16/339 (4%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 M S D +M ++ + +G T NP V +IV +G +IG G G HAEV+ Sbjct: 1 MTTSELTVDEWYMHRCIQLAYNGLGSTYPNPMVGSVIVYEGRIIGEGWHQKAGEAHAEVR 60 Query: 59 ALEEAGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A+ ++ +T YV+LEPC H+G++PPCA II I RVV+ DP +V G+G+ Sbjct: 61 AITSVKDKSLLPKSTIYVSLEPCCHFGKTPPCADLIIAHKIGRVVIGTTDPFAKVHGKGI 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV--- 172 + L G + + E+E + + T + R +I LK A ++D I V Sbjct: 121 EKLRNAGCEVTVGVCEAECRELNKRFFTFHEKHRPYIILKWAETRDGFIAPLHKEEVAPH 180 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ ++ H +R + I+VG+GTVLAD+P L R +P+RII+DP + Sbjct: 181 WISDVYARQTAHQMRTEEQGIVVGVGTVLADNPSLDSR--SWYGRNPVRIIIDPKLRSPK 238 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + + + + I + L+++ L + S++V Sbjct: 239 EFAVWNDRTTT-----LFFTEETSVPEMIHTDFFTIDFKHKPLEQICAKLYEMNLQSMIV 293 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 EGG FI+ L D +++ I GE G+ +P+ Sbjct: 294 EGGGYTLQQFIDEGLWDEAVVFTGDICFGE-GVKAPIFR 331 >gi|256545035|ref|ZP_05472403.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC 51170] gi|256399331|gb|EEU12940.1| riboflavin biosynthesis protein RibD [Anaerococcus vaginalis ATCC 51170] Length = 359 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 159/360 (44%), Gaps = 24/360 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M ++ G T TNP V ++VKD +I G G HAEV + Sbjct: 3 DKEYMRKCFELAKKARGKTLTNPLVGAVLVKDNKIISTGFHHEYGKTHAEVDCFNNLKSD 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GA YV LEPCSH+G+ PC II+ I++V++ D + +V GL+ L I + Sbjct: 63 CDGAILYVNLEPCSHWGKQGPCTLEIIKRNIKKVIISNIDTNPKV--DGLKVLKDNNIEV 120 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++E EGK + R I LK A + D I S I+ S+ VH Sbjct: 121 VTGLLEDEGKKLNEKFFFNVKYNRPLIALKFAQTLDGKISSNINDSKWISNESSRAYVHE 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD---SKIIKTALL 242 LR+ DAI+VG T++ D+P L R+ P+RII+D + ++ D KI Sbjct: 181 LRSDYDAIIVGKNTLIKDNPSLNSRIE--NGVDPVRIIVDTNLEIEKDYMSYKIFNLKSD 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I T D N+NII C + DL L L + S+LVEGG+++ Sbjct: 239 KKTYIATCKD-------TNNPNLNIIKCKMKNNHVDLNDLANKLYKMKIGSILVEGGSSL 291 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 + F+ LVD I + S +I S ++K F F D+ +E Sbjct: 292 NYGFLQEGLVDKIYEFISPKIISGFDSKSSFYGRGVDKIKDAYEFEIEDVKRFDDDIMIE 351 >gi|149197492|ref|ZP_01874543.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa HTCC2155] gi|149139510|gb|EDM27912.1| riboflavin biosynthesis protein RibD [Lentisphaera araneosa HTCC2155] Length = 342 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 159/360 (44%), Gaps = 33/360 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ + G TS NP V +IVKDG VI G G HAE A+ A E Sbjct: 3 EKWMQRAIDNALKAWGHTSPNPHVGAVIVKDGEVIADGWHKKAGTHHAEKDAITNAKEAG 62 Query: 68 R-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 R G+T YVTLEPC YGR+ PC ++I++ GI +VV D + +GRG +L Q Sbjct: 63 REDDLYGSTIYVTLEPCCTYGRTEPCTEWIMDAGIAKVVYGCTDSNPEHAGRGFNYLLQA 122 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ ++ ++E E + E++ ++ LK+A + D I S ITG +++ Sbjct: 123 GVEIEGPILEEECLAINRFFFKWIDEQKPYVILKMAQTLDGKIATESGQSQWITGAEARH 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +V LR DAI+VG T+ D+P L R P R I L + K Sbjct: 183 EVQKLRQGCDAIMVGSETLRQDNPSLNVREIE-NPRHPKRYIWSRS-DLDQNFKAFTQEG 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A ++ + L+ L G +TSLL+EGG +A + Sbjct: 241 GATYCRAQSKNE---------------------WQYFLSQLGGEEITSLLLEGGGFLASA 279 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +++VD I + + ++G S + + + ++ + GK+ + Sbjct: 280 ALKAQIVDEIQFFIAPKILGGEDSRSSVSGLNPLGLDEAIELE----NMQITPCGKDFLV 335 >gi|294777680|ref|ZP_06743131.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510] gi|319640266|ref|ZP_07994991.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A] gi|294448748|gb|EFG17297.1| riboflavin biosynthesis protein RibD [Bacteroides vulgatus PC510] gi|317388041|gb|EFV68895.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 3_1_40A] Length = 350 Score = 295 bits (756), Expect = 6e-78, Method: Composition-based stats. Identities = 112/352 (31%), Positives = 179/352 (50%), Gaps = 21/352 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+GRG++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPFSQVAGRGIEKLRKAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 + ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFN--G 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAAVA 299 + T I D +D L +++ +L + + SLLVEGG+ + Sbjct: 240 KIKTFVFTRES-----PCQPNALTEYISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILL 294 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 SFI+S L D + ++ + + GI +P ++K + + YFG ++ Sbjct: 295 QSFIDSGLWDEAFIEKAPLRL-NNGIQAP----SIQKKHFKLNKIYFGREIM 341 >gi|253564134|ref|ZP_04841591.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5] gi|251947910|gb|EES88192.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_2_5] gi|301161570|emb|CBW21110.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis 638R] Length = 340 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 179/351 (50%), Gaps = 22/351 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68 M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + + Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185 ++E E + + ++T R +I LK A S D I + P+ + ++ VH Sbjct: 121 GVLEPECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + + Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ TE+ K+N+ I + L ++L+ L R + SL+VEGG + SFI Sbjct: 237 LVFTEH------PRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMVEGGRILLESFI 290 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 S + D +I+ +S ++ G+ +P + EK+F R Y + Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|150003437|ref|YP_001298181.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC 8482] gi|254881264|ref|ZP_05253974.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA] gi|149931861|gb|ABR38559.1| riboflavin biosynthesis protein ribD [Bacteroides vulgatus ATCC 8482] gi|254834057|gb|EET14366.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 4_3_47FAA] Length = 350 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 179/352 (50%), Gaps = 21/352 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAYNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP +V+G+G++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKRIPKVVIGCIDPYSQVAGKGIEKLRKAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKN 181 + ++E E + + ++T KR +ITLK A S D I + G PI + ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESADGFIDINRTGGKPIILSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ Sbjct: 184 LVHKKRAEHDAILVGRHTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELFN--G 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD-CRD-LKKLLTILVGRGVTSLLVEGGAAVA 299 + T I D +D L +++ +L + + SLLVEGG+ + Sbjct: 240 KIKTFVFTRES-----PCQPNALTEYISLDFNKDILPQIMEVLYQKKIQSLLVEGGSILL 294 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 SFI+S L D + ++ + + GI +P ++K + + YFG ++ Sbjct: 295 QSFIDSGLWDEAFIEKAPLRL-NNGIQAP----SIQKKHFKLNKIYFGREIM 341 >gi|254386271|ref|ZP_05001580.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1] gi|194345125|gb|EDX26091.1| riboflavin biosynthesis protein RibD [Streptomyces sp. Mg1] Length = 360 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 176/354 (49%), Gaps = 10/354 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G V+G G G PHAEV AL AG ARG Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDARGAVVGEGWHQRAGGPHAEVHALRAAGTAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPC+H GR+ PCAQ +IE G+ RVV V DP+ + SG G L GI + Sbjct: 61 GTAYVTLEPCNHTGRTGPCAQALIEAGVTRVVYAVSDPNPQASGGGAT-LRAAGIATEAG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++E E + A+LT R H+ K A + D I A S I+ S+ VH LRA Sbjct: 120 LLEQEAEEGNAAWLTSVRRGRPHVLWKYAATLDGRIAAADGTSRWISSPESRADVHRLRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAPVI 246 ++DA++VG GT+ ADDP L R + P+R++LD + ++++ A AP + Sbjct: 180 EADAVVVGSGTLRADDPHLAVRGRPGTDPADQPLRVVLDTRATVRPGARVLDDA--APTL 237 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I D L + + LL L RGV S+L+EGG +A +F+ + Sbjct: 238 IAVAEDADTGHLPGVDLVRLPADENGISVHALLAELHRRGVRSVLLEGGPTLAGAFVAAG 297 Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 VD ++ Y + +++G G + ++ G D+ + + + Sbjct: 298 AVDKVVGYLAPVLLGAGRTALGDAGIDTIADALRLRITETVRIGPDLRVTAVPE 351 >gi|260665250|ref|ZP_05866099.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii SJ-7A-US] gi|313472797|ref|ZP_07813285.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153] gi|260560987|gb|EEX26962.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii SJ-7A-US] gi|313448878|gb|EEQ68026.2| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 1153] Length = 352 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM AL + T TNP V ++VKD V+ G G HAE A+ + Sbjct: 1 MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 60 Query: 63 AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 61 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++ E K Y+ ++TLK A+S D+ ITG + Sbjct: 121 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNKRIQ-ITGNAAS 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH RA AI+VG T L D+P L + Q+H P+R+++D +L + + Sbjct: 180 QRVHQERADYQAIMVGSSTALIDNPTLLT--SIKQDHPPIRLVIDRRGRLLNQQLTLFSD 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP I T+N P LA ++ + D L ++L IL V S+ VEGG A+ Sbjct: 238 NRAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 295 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 SF+ +L +I Y S +G L+ + +N ++ +Y D+ + Sbjct: 296 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 345 >gi|238855788|ref|ZP_04646080.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3] gi|282934748|ref|ZP_06339990.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|238831564|gb|EEQ23909.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 269-3] gi|281301189|gb|EFA93491.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] Length = 359 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D FM AL + T TNP V ++VKD V+ G G HAE A+ + Sbjct: 8 MMKTDEDFMGLALTEASKGRYHTWTNPMVGAVVVKDNQVLATGYHHRYGDVHAERDAISK 67 Query: 63 AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 68 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHSLVTGKGIKKLKA 127 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++ E K Y+ ++TLK A+S D+ ITG + Sbjct: 128 HNISVTTGVLAQEAKKLNQHYVYFYEHNLPYVTLKQALSLDHKCSYPNKRIQ-ITGNAAS 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +VH RA AI+VG T L D+P L + Q+H P+R+++D +L + + Sbjct: 187 QRVHQERADYQAIMVGSSTALIDNPTLLT--SIKQDHPPIRLVIDRRGRLLNQQLTLFSD 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP I T+N P LA ++ + D L ++L IL V S+ VEGG A+ Sbjct: 245 NRAPTWIFTQN--PELAKTSYPPHVKVFLLDQGTLTEVLQILAQNKVQSVYVEGGPALMK 302 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 SF+ +L +I Y S +G L+ + +N ++ +Y D+ + Sbjct: 303 SFVEEKLAQELITYFSPTFLGSNA----LDGFEITENLKLIQPNYQVLDKDIRI 352 >gi|325103646|ref|YP_004273300.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145] gi|324972494|gb|ADY51478.1| riboflavin biosynthesis protein RibD [Pedobacter saltans DSM 12145] Length = 347 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 167/354 (47%), Gaps = 22/354 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL------ 60 D+ FM A+ + G S NP V ++ DG +IG G G HAEV A+ Sbjct: 4 DSIFMQRAIDLALLGAGSVSPNPMVGAVVAHDGQIIGEGYHKKYGESHAEVNAIQNVIDN 63 Query: 61 -EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + A + +T YVTLEPC+HYG++PPCA II+ I R+V+ DP V+G+G++ L Sbjct: 64 FKNADHLLKQSTIYVTLEPCAHYGKTPPCADLIIKHCIPRIVIGCRDPFDSVNGKGIEKL 123 Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G ++ ++E+E + T+ ++R ++ LK A + + ITG Sbjct: 124 LIAGKEVITGVLETECLELNRRFFTQIQKQRPYVILKWAQTANGFFAPENHQQRWITGKE 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 SK VH RA+ D ILVG T + D+P+L RL ++ +P R ++D + L ++ Sbjct: 184 SKILVHQWRAEEDCILVGKNTAIIDNPQLNVRL--VKGKNPKRAVIDKNLALPPHLNLLD 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I + + + K I+I D + +L L + V S++VEGG Sbjct: 242 N--KQETFIFNAIESKI---VGKNKYISIEDFDHFLPQYILYQLYLQDVQSVIVEGGVTT 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 SFI L D ++ S+ E GI +P +G + D GSD Sbjct: 297 LQSFIKHNLWDEARIFYSEDY-WENGINAPTIKG------NQISTDKVGSDTLT 343 >gi|254562342|ref|YP_003069437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens DM4] gi|254269620|emb|CAX25591.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens DM4] Length = 376 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 137/363 (37%), Positives = 193/363 (53%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A + I + DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +G+ GG+P+ L + + V +G D + Sbjct: 313 LADALAAHDLIDACTLITGSVTLGDAGGLPALGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 YIG 356 Y Sbjct: 373 YER 375 >gi|240139918|ref|YP_002964395.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens AM1] gi|240009892|gb|ACS41118.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;5-amino-6-(5-phosphoribosylamino) uracil reductase [Methylobacterium extorquens AM1] Length = 376 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 138/363 (38%), Positives = 193/363 (53%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 13 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 72 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 73 EAARGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 132 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 133 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 192 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 193 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 252 Query: 244 PVIIVTENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A + I + DL L L RG+T + EGG A Sbjct: 253 PTLVLTGRGAPAHARRMLASFGVEIAFVPTDAEGRIDLPAALKALAERGLTRICSEGGPA 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +GE GG+P + L + + V +G D + Sbjct: 313 LADALAAHDLIDACTLITGSVTLGEAGGLPVLGANLARRLADGSLSVVETRDYGPDTAVT 372 Query: 354 YIG 356 Y Sbjct: 373 YER 375 >gi|281357052|ref|ZP_06243542.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC BAA-548] gi|281316610|gb|EFB00634.1| riboflavin biosynthesis protein RibD [Victivallis vadensis ATCC BAA-548] Length = 346 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 117/357 (32%), Positives = 169/357 (47%), Gaps = 35/357 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEA 63 D +FM AL +R GLTS NP V +IV+DG +IGRG G PHAE+ AL E+ Sbjct: 8 DQKFMLEALALARMGWGLTSPNPMVGAVIVRDGEIIGRGYHCKAGEPHAEINALIDVEKH 67 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G +A+GAT YVTLEPCS GR+P C I GI RVV+ DP+ + +GRG+Q L + G Sbjct: 68 GLDAKGATIYVTLEPCSTVGRTPACTDAIRAAGISRVVIGSLDPNPKHAGRGVQLLEEAG 127 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + + + R + LK+A++ D I A S ITG ++ + Sbjct: 128 IQVTVGVERAACGEINRPFFKWITTGRPFVILKMAMTLDGKIATADGESKWITGPDARRR 187 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 V LR SDAI+VG TV D P LT R P+R+I Sbjct: 188 VQQLRRLSDAIMVGGETVRQDRPLLTVREPDSWPCQPLRLIASRSM-------------- 233 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 D+ L F N ++ + D +LL L R +T LL+EGG +A S Sbjct: 234 ---------DEEELEEYFPDGNAELVRLESEEDWGRLLDELGKREITCLLIEGGGELAAS 284 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYFGSDVCL 352 + + VD + + + ++G P+ G L + V+ ++G D+ + Sbjct: 285 ALQAWAVDYVEFHIAPKLLGGRD-SRPVLGGDNPDSMALAQQLHRVKVTHYGEDIAI 340 >gi|189464287|ref|ZP_03013072.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM 17393] gi|189438077|gb|EDV07062.1| hypothetical protein BACINT_00628 [Bacteroides intestinalis DSM 17393] Length = 345 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 168/348 (48%), Gaps = 18/348 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + NP V +IV DG +IG G G HAEV A+ + Sbjct: 4 EKYMRRCIQLAQNGFCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDTS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+GRG+Q L G Sbjct: 64 LLKRSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGRGIQKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM--AGCGSVPITGFISKNQ 182 + ++E+E + + ++T +R +ITLK A S D I + G V ++ ++ Sbjct: 124 VTVGVLENECRHLIRRFITFHTLRRPYITLKWAESADGFIDLHRNGGSPVILSTPLTSMM 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ AILVG T D+P L R SP+R+++D LS + Sbjct: 184 VHKKRAEHAAILVGTRTAELDNPSLNVR--NWYGRSPVRLVIDRRLSLSPTLHLFDGN-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P ++ TE+ + I L +++ +L R + SLLVEGG+ + SF Sbjct: 240 VPTLVFTEHPH----NSLPGVEYLPINFGQDILPQIMQVLYERNLQSLLVEGGSTLLQSF 295 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 I++ L D + S I + S + + V YFG + Sbjct: 296 IDASLWDEAFVEESPIHL-----TSGVNAPKMNDKNSYVNEQYFGRSI 338 >gi|167762046|ref|ZP_02434173.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC 43183] gi|167700138|gb|EDS16717.1| hypothetical protein BACSTE_00394 [Bacteroides stercoris ATCC 43183] Length = 347 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 173/354 (48%), Gaps = 24/354 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ ++ + + NP V +IV DG +IG G G HAEV A+ + Sbjct: 4 EKYMRRCIQLAQNGLCNAAPNPMVGAVIVCDGKIIGEGYHVRCGEAHAEVNAIRSVKDPS 63 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +T YV+LEPC+HYG++PPCA IIE I R+V+ DP +V+GRG++ L G Sbjct: 64 LLKRSTIYVSLEPCAHYGKTPPCADLIIEKEIPRIVIGCQDPFAKVAGRGIRKLKDAGRE 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI--GMAGCGSVPITGFISKNQ 182 ++ ++E E + + ++T R +ITLK A S D I V ++ ++ Sbjct: 124 VITGVLEDECRSLIRRFITFHTLHRPYITLKWAESADKYIDKNREDGQPVILSTPLTSML 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA+ +AI+VG T D+P LT R Q SP+RI+ D +LS ++ + Sbjct: 184 VHKKRAEHNAIMVGTRTAELDNPSLTVR--NWQGRSPVRIVTDRQLRLSPKLRVFDGNVR 241 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++ TE + N+ I D L +++ L +G+ SLLVEGG + Sbjct: 242 --TLVFTE------KPCQPQPNVEYIPIDFQRNILPQIMEHLYMQGLQSLLVEGGNILLQ 293 Query: 301 SFINSRLVDSIILYRSQIVIGEG------GIPSP-LEEGYLEKNFMCVRRDYFG 347 SFI++ L D + S + + G G +P E Y +NF G Sbjct: 294 SFIDAELWDEAFVEESPLTLLSGIKAPEIGNKAPCTNEVYFGRNFRHYSATRLG 347 >gi|256839100|ref|ZP_05544610.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13] gi|256740019|gb|EEU53343.1| riboflavin biosynthesis protein RibD [Parabacteroides sp. D13] Length = 359 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 171/336 (50%), Gaps = 16/336 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E + A++T Q + R +I LK A S+D I ++ Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 ++ + +I TE + I + ++++L L R + SLLVEGG Sbjct: 239 LLN--GFSRTLIFTEKE----VENRENMEYIRIDFEGPVIRQVLDHLAARKLDSLLVEGG 292 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 A + +SF+ + + D + + + + G+ +P+ Sbjct: 293 AQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327 >gi|291545679|emb|CBL18787.1| riboflavin biosynthesis protein RibD [Ruminococcus sp. SR1/5] Length = 253 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 3/243 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A++ ++ G T+ NP V +IVKDG +IG G G HAE A+ E Sbjct: 3 DQEYMLRAIQLAKKGEGWTNPNPMVGAVIVKDGRIIGEGYHKKYGELHAERNAIASLTEP 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GA YVTLEPC H+G++PPC + IIE IR+VV+ DP+ +V+G+G+Q L + G+ + Sbjct: 63 AEGAVIYVTLEPCCHHGKTPPCTETIIEQKIRKVVIGSRDPNPKVAGKGVQMLREAGVTV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V+ M E + K ++ +K A++ D I S ITG ++ +V Sbjct: 123 VEDFMREECDQLNPVFFHYITTKTPYVVMKYAMTLDGKIATKTGASKWITGEAARKEVQH 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R Q I+ GIGTVLADDP L R+ G SP+RI+ D ++ DS+I+K+A Sbjct: 183 MRHQYMGIMAGIGTVLADDPMLNVRVEGW--KSPVRIVCDSKLRIPPDSQIVKSAEKYRT 240 Query: 246 IIV 248 I+ Sbjct: 241 IVA 243 >gi|257899304|ref|ZP_05678957.1| riboflavin specific deaminase [Enterococcus faecium Com15] gi|257837216|gb|EEV62290.1| riboflavin specific deaminase [Enterococcus faecium Com15] Length = 364 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 112/361 (31%), Positives = 174/361 (48%), Gaps = 15/361 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GEEA 67 FM AA+ ++ G T TNP V IVK+G +I G + G HAEV A++ EE Sbjct: 12 FMLAAIAEAKKGKGNTFTNPLVGAAIVKEGKLISLGAHLHYGESHAEVNAIQNCSSPEEL 71 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC+H G+ PPC Q I++ GI VV+ DP+ V+G+G ++L + GI ++ Sbjct: 72 FNSTLYVTLEPCNHQGKQPPCTQAIVQSGITTVVIGQLDPNPLVAGKGREFLQKHGIKVI 131 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E + + Y R +ITLK AV+ D I + IT + ++V Sbjct: 132 VGVEEEKCRALNPFYNHFFEMDRPYITLKQAVTLDGKISIKKGSRHSITSPKAISRVRKE 191 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAP 244 R + I+VG TVL D+P L + P+RI+LD ++ S + + + +P Sbjct: 192 RGEYQGIVVGSETVLVDNPHLL--PDAENIFPPVRIVLDRRGQILKSPELNLFQ-KTTSP 248 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V I TEN + ++ I Y + + +GV SL VEGGA + +F+ Sbjct: 249 VWIFTENHELKEIFP----HVTIFYTPKFSFAFFIETMRKKGVQSLYVEGGAKIHDAFLA 304 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGKNLCLQ 362 L D +I Y + + G S E + K+ + + G D+ + K C Q Sbjct: 305 ESLWDEVISYIAPKLFGGTSPMSFHSERLVSKDQQLEFLEVEQLGEDIRVRGKRKQ-CSQ 363 Query: 363 E 363 + Sbjct: 364 D 364 >gi|327538743|gb|EGF25393.1| riboflavin biosynthesis protein RibD [Rhodopirellula baltica WH47] Length = 394 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 189/383 (49%), Gaps = 31/383 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ A+ + G NP V C++V+D + IG+G G PHAEV+AL Sbjct: 13 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCVLVRDSVCIGKGYHQRFGGPHAEVEALSSC 72 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G Sbjct: 73 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 131 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + + G+ L AYL R + K A+S D I S ITG S+ Sbjct: 132 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 191 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-------------QEHSPMRIILDPHFK 229 VH LRA DAI VG+GTV+AD+P LT RL+ L + + +R++ Sbjct: 192 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTNTEDRSNQLVRLVYSRSRL 251 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKL----LTILVG 284 L S++++TA P ++ LA ++ C+ D ++ L L Sbjct: 252 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 311 Query: 285 RG------VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336 + +T L+VEGG+ + SF + +D + + + IG P PL + ++ Sbjct: 312 KDNPRGLEMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGSCIGGRSAPGPLGDPGIKALS 371 Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356 + R D F +DV L Y Sbjct: 372 DATSLRMSRVDSFDNDVRLIYRR 394 >gi|146297767|ref|YP_001192358.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae UW101] gi|146152185|gb|ABQ03039.1| riboflavin biosynthesis protein RibD [Flavobacterium johnsoniae UW101] Length = 349 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +++ + +R G T NP V +IV + +IG G G PHAEV A+ ++ Sbjct: 5 EKYIKRCIELARNGFGTTYPNPMVGSVIVYEDTIIGEGWHKKAGEPHAEVNAVRSVKDKS 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + AT YV+LEPCSH+G++PPC II I VVV DP+ +V+GRG++ L + G Sbjct: 65 LLKKATIYVSLEPCSHFGKTPPCCDLIIANKIPNVVVGTVDPNEKVAGRGIKKLIEAGAN 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITGFIS 179 +V ++E E + T +KR +I LK A S D + V IT S Sbjct: 125 VVVGILEDECNELNKRFFTFHQKKRPYIILKWAESLDGFLAPEKEIDQERKPVWITNQYS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH R++ AIL G TV+ D+P+L R ++P+R+ILD + ++S DS + Sbjct: 185 RQLVHKWRSEEQAILAGTQTVVDDNPKLNVR--DWSGNNPVRVILDQNNRISKDSFVFDE 242 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + I+ T++++ ++ I D ++ +L +L + S+++EGG Sbjct: 243 S--VKTIVFTKSEN---MISTENTIFEKIDFDKNSIENILAVLYQHQIQSIIIEGGRQTL 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP 328 SFIN + D ++ + + G +P Sbjct: 298 ESFINENIWDEARIFIGKNTF-KKGTKAP 325 >gi|60680029|ref|YP_210173.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis NCTC 9343] gi|60491463|emb|CAH06213.1| putative riboflavin biosynthesis protein [includes: diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacteroides fragilis NCTC 9343] Length = 340 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68 M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + + Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185 ++E+E + + ++T R +I LK A S D I + P+ + ++ VH Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + + Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ TE+ K+N+ I + L ++L+ L R + SL++EGG + SFI Sbjct: 237 LVFTEH------PRSGKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 S + D +I+ +S +I G+ +P + EK+F R Y + Sbjct: 291 RSGIWDEVIIEKSDKLI-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|222099734|ref|YP_002534302.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM 4359] gi|221572124|gb|ACM22936.1| Riboflavin biosynthesis protein RibD [Thermotoga neapolitana DSM 4359] Length = 348 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 186/366 (50%), Gaps = 30/366 (8%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 RFM A+ ++ +G + NP V ++VK+G +I G Y G PHAE A+E A G Sbjct: 3 ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPYFGGPHAERVAIESAKRKG 62 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ VSG G++ L + GI Sbjct: 63 EDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHGI 121 Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + E L ++T E R I LK A + D I A S IT + +++ Sbjct: 122 EVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHKA 180 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTALL 242 H +R A+LVG TVL DDP LTCRL G +P R+ILD LS S ++ + Sbjct: 181 HEMRNVYSAVLVGARTVLKDDPRLTCRLKG--GRNPTRVILDRRGILSGGSYRVFEDN-- 236 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A VI+ TEN + + K + + +L +L +GV S+LVEGG+ V F Sbjct: 237 ARVIVFTENKEAKYPVHVEK------VLNDCSVGGILKVLYEKGVDSVLVEGGSEVLGEF 290 Query: 303 INSRLVDSIILYRSQIVIGEG-----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + D + + S V GEG G S + + F VR ++ +++ LE Sbjct: 291 LE--YADVVFAFYSTKVFGEGLDVFSGYRSSVSD---PPRFRIVRSEHTDTELFLEMRP- 344 Query: 358 NLCLQE 363 C + Sbjct: 345 --CSRG 348 >gi|148240028|ref|YP_001225415.1| riboflavin biosynthesis protein ribD (diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. WH 7803] gi|147848567|emb|CAK24118.1| Riboflavin biosynthesis protein ribD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase) [Synechococcus sp. WH 7803] Length = 372 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 122/362 (33%), Positives = 185/362 (51%), Gaps = 14/362 (3%) Query: 3 VSSFDARF---MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ 58 V+ D R+ M AL + G TS NP V +++ G+++G G A G PHAEV Sbjct: 4 VADPDQRWIPWMRRALALAALADGHTSPNPLVGAVVLDSSGVLVGEGFHARAGQPHAEVG 63 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL +AG ARG T VTLEPC H+GR+PPCA +I+ GI RVVV + DPD RV+G GLQ Sbjct: 64 ALAQAGAAARGGTIIVTLEPCCHHGRTPPCADAVIKAGIARVVVALTDPDPRVAGGGLQR 123 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ ++ ++E+E A++ R R LK A+S D ++ S I+G Sbjct: 124 LRDAGVEVISGVLEAEAAHQNLAFVYRVRTGRPWGVLKWAMSLDGRTALSNGASQWISGP 183 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 +++ VH LRAQ DA++VG GTV ADDP LT R GL+ P+R++L L +++ Sbjct: 184 SARSWVHRLRAQCDAVIVGGGTVRADDPLLTSR--GLRSPEPLRVVLSRSLDLPDQAQLW 241 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + +AP ++V D P A + + + + L+ +L RG +L E G Sbjct: 242 DQS-VAPTLVVHGLDAPAGARSRLDAVGVQRQELQACEPEALMAVLAQRGCNRVLWECGP 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVC 351 +A + I V I + ++G +PL + +++ D+ Sbjct: 301 GLAAAAIQQGCVQDIAAVIAPKLLGGEPARTPLGTLGFQAMNEVLELQGLQQQRLADDLL 360 Query: 352 LE 353 L+ Sbjct: 361 LQ 362 >gi|293366290|ref|ZP_06612971.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis M23864:W2(grey)] gi|291319592|gb|EFE59957.1| riboflavin biosynthesis protein RibD [Staphylococcus epidermidis M23864:W2(grey)] Length = 343 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 167/352 (47%), Gaps = 14/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A++ ++ G T NP V ++VK+G ++G G G HAEVQA+E AG +GA Sbjct: 1 MDDAIQLAKMVNGQTGVNPPVGSVVVKNGRIVGLGAHLKKGDKHAEVQAIEMAGLNTQGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV+LEPC+H+G +PPC IIE GI +V+ V D + +G + L + GI V+ Sbjct: 61 TIYVSLEPCTHHGSTPPCVHKIIEAGISKVIYAV--KDTTLVSKGDEILREAGIEVEFQY 118 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + T + + +T+K++ S D S IT K V+ LR + Sbjct: 119 NENAAALYRDFFTAKRNEVPEVTVKVSSSLDGKQATDFNESKWITNKEVKEDVYQLRHEH 178 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA++ G T+ AD+P T R+ P+R+IL +L + +I K + + I TE Sbjct: 179 DAVITGRRTIEADNPLYTTRVP--DGKHPIRVILSKKGQLDFNQQIFKDT-ASEIWIYTE 235 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N+ L K I II D +L L RG+ LLVE G + F+ S+ ++ Sbjct: 236 NE----KLKTNKSFIKIINISNCDTTTILQDLYQRGIGKLLVEAGPNITSQFLQSKHLNE 291 Query: 311 IILYRSQIVIGEGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +ILY + +IG G + + F V ++ L+ K Sbjct: 292 LILYIAPKLIGGSGKHQFYKTDEVIDLPEATQFEIVDSKLINQNLKLKLRKK 343 >gi|325283811|ref|YP_004256352.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus MRP] gi|324315620|gb|ADY26735.1| riboflavin biosynthesis protein RibD [Deinococcus proteolyticus MRP] Length = 376 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 120/358 (33%), Positives = 184/358 (51%), Gaps = 21/358 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK----DGIVIGRGVTAYGGCPHAEVQALEE 62 D FM+ AL + +G TS NP V C++V+ G V+GRG G PHAEV AL E Sbjct: 8 DEDFMAQALAEAARGLGRTSPNPPVGCVLVQPNGSGGEVVGRGFHPRAGEPHAEVFALRE 67 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV DP+ +V+GRGL+ L Sbjct: 68 AGERARGATAYVTLEPCSHFGRTPPCADALMAAGVARVVVAAGDPNPQVNGRGLERLRAA 127 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG-----SVPITG 176 GI + ++E++ + R + R + K A++ D + G + +TG Sbjct: 128 GIAVQTGVLEAQAVRQQAGFRARMLLGRPFVIYKYAMTLDGKVAALEEGGGSEANGAVTG 187 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ +V R ++DAI VG+ T+L DDP+LT R + P +I D + ++ Sbjct: 188 PEARARVMGWRNEADAIAVGVDTLLTDDPQLTTR-GVVGGRDPRPVIFDRQGRTPPTARA 246 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 ++ ++VT ALA + L++ L L GV++LL+EGG Sbjct: 247 LRPGA----VVVTAPGAEAPALADAGA----VLLPAATLEEALRGLHDLGVSTLLLEGGP 298 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F S L+D + + + ++G G P PL + G+D+ + Sbjct: 299 TLASAFAESDLIDEVRAFIAPKLLGAGLSPLAGPLRRMNAAGMLDMYALEQLGADILV 356 >gi|265765179|ref|ZP_06093454.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16] gi|263254563|gb|EEZ25997.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_16] Length = 340 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68 M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + + Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185 ++E+E + + ++T R +I LK A S D I + P+ + ++ VH Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + + Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWYGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ TE+ K+N+ I + L ++L+ L R + SL++EGG + SFI Sbjct: 237 LVFTEHPRA------GKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 S + D +I+ +S ++ G+ +P + EK+F R Y + Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|295135421|ref|YP_003586097.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia profunda SM-A87] gi|294983436|gb|ADF53901.1| bifunctional riboflavin biosynthesis protein RibD [Zunongwangia profunda SM-A87] Length = 348 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 179/357 (50%), Gaps = 20/357 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + +++ L+ + +G T NP V +IV +IG G G PHAEV A+ Sbjct: 4 NIHEKYIKRCLQLAENGLGSTYPNPMVGSVIVYKNQIIGEGWHQKAGEPHAEVNAVNSVK 63 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + +T YV+LEPCSH+G++PPC+ II GI++VVV DP V+GRG++ L + Sbjct: 64 NRDLLKKSTIYVSLEPCSHFGKTPPCSDLIIAKGIKKVVVATVDPFAEVAGRGIKKLMEA 123 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFI 178 G + ++E E + + T +KR +I LK A S+D I V I+ Sbjct: 124 GCDVTLGVLEQEAQHLNKRFFTFHNKKRPYIILKWAQSEDGFIAPLQRKDRAPVWISNRY 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 SK VH RA+ AILVG T + D+P+L RL ++P+R+++D K+ S I Sbjct: 184 SKQLVHKWRAEEQAILVGTKTAIEDNPKLNTRL--YAGNNPVRVVIDRSGKIPAASAIFD 241 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++ II+TEN+ + + ++ + +++ +IL + S+++EGG Sbjct: 242 GSI--KTIIITENNQKITSKNLEYRHADFSQ---NLPEQIGSILFQENLQSVIIEGGLQT 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SFI+++L D ++ + + + G+ +P +G + + ++ Y+ Sbjct: 297 LQSFIDAKLWDEARVFSGNVQL-KMGVSAPEFQG------KLISEEKIEDNLLKTYL 346 >gi|32474082|ref|NP_867076.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula baltica SH 1] gi|32444619|emb|CAD74621.1| riboflavin bifunctional biosynthesis protein RibG [Rhodopirellula baltica SH 1] Length = 427 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 188/383 (49%), Gaps = 31/383 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S+ D R+M+ A+ + G NP V C +V+D + IG+G G PHAEV+AL Sbjct: 46 SAVDVRWMTEAIELAYQGRGKVEPNPPVGCALVRDSVCIGKGYHQRFGGPHAEVEALSSC 105 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A GATAYV+LEPC H+G++PPCA +I + RVVV V DP +V G G++ L G Sbjct: 106 -DDATGATAYVSLEPCCHHGKTPPCADALIRAKVARVVVSVVDPFDQVDGGGIEKLRAAG 164 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + + G+ L AYL R + K A+S D I S ITG S+ Sbjct: 165 IEVVTGIAKEAGEELLAAYLKRVRTGMPWVIAKWAMSLDGRIATQTGESKWITGPASRGA 224 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGL-------------QEHSPMRIILDPHFK 229 VH LRA DAI VG+GTV+AD+P LT RL+ L + + +R++ Sbjct: 225 VHELRASVDAIAVGMGTVIADNPLLTVRLSELAKVSAAKSTHTEDRSNQLVRLVYSRSRL 284 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKL----LTILVG 284 L S++++TA P ++ LA ++ C+ D ++ L L Sbjct: 285 PDLQSQLVQTASQTPTWLIAGPQIANADLARLADHDVETWQCESADPIEMVQQSLLWLGS 344 Query: 285 RG------VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-- 336 + +T L+VEGG+ + SF + +D + + + IG P PL + ++ Sbjct: 345 KDNPRGLAMTHLMVEGGSQLLGSFAAADQIDEVHAFIAGKCIGGRSAPGPLGDPGIKALS 404 Query: 337 ---NFMCVRRDYFGSDVCLEYIG 356 + R D F +DV L Y Sbjct: 405 DATSLRMSRVDSFDNDVRLIYRR 427 >gi|258651000|ref|YP_003200156.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM 44233] gi|258554225|gb|ACV77167.1| riboflavin biosynthesis protein RibD [Nakamurella multipartita DSM 44233] Length = 366 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 115/373 (30%), Positives = 172/373 (46%), Gaps = 37/373 (9%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 ++ + + A + + NP V C+++ G +G G G PHAEV AL Sbjct: 6 LTPAEFAALHRAAELAEYGAATALPNPVVGCVLLAPGGWTVGEGYHRRPGGPHAEVAALT 65 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG ARG TA V+LEPC+H GR+ PC+Q +I G+ RV+V V DP +G G+ L Q Sbjct: 66 AAGPLARGGTAVVSLEPCNHTGRTGPCSQALIAAGVSRVIVAVRDPWPPAAG-GVDHLRQ 124 Query: 122 KGIIVDRMME------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 G+ V + + +L R +T K+ ++ D + A Sbjct: 125 AGVQVVDLPSLAGQDPAAAAAVEHAQDVNRVWLAAMRHGRPFVTWKVGMTIDGRVAAADA 184 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPH 227 S IT S+ VH LRA+ D I+VG+GTVL DDP LT R + + P+R+++D Sbjct: 185 TSRWITSPQSRADVHALRARVDTIMVGVGTVLDDDPALTVRDDQGEPVGRQPLRVVIDSS 244 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + ++++ A AP + T A DL +L L RG Sbjct: 245 GRTPAQARVLDDA--APTWLATAESAGTGAD------------GRVDLAAVLAELWRRGR 290 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVR 342 +L+EGG +A SF+++ LVD ++ Y + ++G G PS L G + V Sbjct: 291 RHVLLEGGPHLAASFLDAGLVDEVVAYVAPTLLGAG--PSALSGGAVGTLSDAHAAELVD 348 Query: 343 RDYFGSDVCLEYI 355 FG DV L Y Sbjct: 349 LTRFGPDVRLRYR 361 >gi|221639820|ref|YP_002526082.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides KD131] gi|221160601|gb|ACM01581.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides KD131] Length = 362 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 135/358 (37%), Positives = 197/358 (55%), Gaps = 11/358 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 DA M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG Sbjct: 3 DADHMAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A GATAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + Sbjct: 63 ALGATAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +R++E+E + +L R E +TLK+A + D I A S ITG +++ VH Sbjct: 123 TERVLEAEARTAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHA 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R + DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV Sbjct: 183 MRMRHDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPV 241 Query: 246 IIVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + P A A + I+ D + + +L L G+T + EGGA + Sbjct: 242 WLCHGPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGA 301 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + + L D ++ + + +IGE G + L + D G D+ + Sbjct: 302 ALVRAGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTMGGDLLARW 359 >gi|260662243|ref|ZP_05863139.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum 28-3-CHN] gi|260553626|gb|EEX26518.1| riboflavin biosynthesis protein RibD [Lactobacillus fermentum 28-3-CHN] Length = 352 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 113/351 (32%), Positives = 161/351 (45%), Gaps = 9/351 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63 S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + + Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + +++ + + Y ++ IT K A+S D + A + IT ++ Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQWPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH RA AI+VG GTVLADDP L C L P+R+ILD + L + + T Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +VT N ++ + D +LL + SL VEGG AV Sbjct: 240 SAPTWLVTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTE 297 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + V+ +I Y +IG+ G+ V G D+ + Sbjct: 298 LFQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTAFTHRTV--TQLGDDIRI 346 >gi|298373665|ref|ZP_06983654.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274 str. F0058] gi|298274717|gb|EFI16269.1| riboflavin biosynthesis protein RibD [Bacteroidetes oral taxon 274 str. F0058] Length = 349 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 100/356 (28%), Positives = 167/356 (46%), Gaps = 25/356 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D ++M + +R+ G + NP V +IV+DG +IG G G HAEV A+ Sbjct: 3 IDEQYMRRCITLARYADGYAAPNPMVGAVIVRDGKIIGEGYHRRYGEAHAEVNAVNSVLN 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + R +T YV LEPCSHYG++PPC I+ GI VVV + D + V G G++ L + G Sbjct: 63 KDLLRRSTLYVNLEPCSHYGKTPPCVDLIVRSGIPNVVVGMRDVNPEVCGNGIRKLLEAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFI 178 + +V+ ++E E + ++T +KR +I LK A + D I + I+ Sbjct: 123 VGVVEGVLEDECRFLNRRFITFMQKKRPYIILKWAQTADGFIDELRDTPARKPLKISNPT 182 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +K H +R +I+V T + D+P LT + +P+RI++D + ++ I Sbjct: 183 TKTLNHCMRTHEMSIMVATRTAILDNPRLTA--SKWNGRNPIRILIDRTLSVPIEYNIFD 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGA 296 A ++ + + NI + D + ++L L R + S++VEGG Sbjct: 241 D--KAKTLVFNSIRNEI------NDNIEFVKLDFEQNIIPQILNELYVRNIQSVIVEGGR 292 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + SFI + D S+ +I G+P+P + V FG ++C Sbjct: 293 RLLVSFIEYGVWDECHTEVSKQII-RNGVPAP-----SMIDLEPVAEQQFGENICF 342 >gi|254468535|ref|ZP_05081941.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13] gi|207087345|gb|EDZ64628.1| riboflavin biosynthesis protein RibD [beta proteobacterium KB13] Length = 363 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 173/362 (47%), Gaps = 13/362 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D FM+ A++ ++ +G + NP V +IV D +I G G PHAEV A+ Sbjct: 1 MTFNKLDFFFMAQAIKLAKKGLGQCNPNPIVGAVIVVDDKIIATGYHQEFGGPHAEVVAI 60 Query: 61 EEAGEEA--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++A + +T +VTLEPC+H G++PPC I++ I+RVV+ DP+ +V+G ++ Sbjct: 61 HNCKDKALLKKSTLFVTLEPCAHEGKTPPCLDLILKHDIKRVVIASQDPNPKVNGISIKS 120 Query: 119 LSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L +KG+ VD +ME + + R + + KIAVS D + S I+ Sbjct: 121 LIEKGVEVDVGLMEDQAFNLNKGFFKRILNNIPRVVSKIAVSSDGKTALNNFQSKWISNE 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 S++ V LR SD IL T+ +D+P T R P R I+D F+ +LD+ I Sbjct: 181 FSRSDVQKLRRLSDGILTSYKTINSDNPRFTVRDVD-SSKQPYRFIIDASFQSNLDAHIF 239 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGA 296 K V+I + + I + D + +++ + V +LLVE G Sbjct: 240 KQE---KVVIFYSKEITNKP-NLKAICIPVSCVDGVLNFTEIMKHIASMEVNNLLVEAGP 295 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKN-FMCVRRDYFGSDVCL 352 + + R++D +I+Y+SQ ++G P+ +N + +F D+ Sbjct: 296 GLNGLLLQHRMIDELIIYQSQSLLGGNAREMFNHPVITAMESRNQLKLMDCRFFDKDIRF 355 Query: 353 EY 354 Y Sbjct: 356 IY 357 >gi|53711798|ref|YP_097790.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46] gi|52214663|dbj|BAD47256.1| riboflavin biosynthesis protein RibD [Bacteroides fragilis YCH46] Length = 340 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 22/351 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EAR 68 M ++ ++ + S NP V +IV +G +IG G G HAEV A+ + + Sbjct: 1 MRRCIQLAKNGLCNVSPNPMVGAVIVCEGQIIGEGYHIRCGEAHAEVNAIRSVKDPSLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YV+LEPCSH+G++PPCA IIE I R+V+ DP +V+G+G+Q L G ++ Sbjct: 61 HSTIYVSLEPCSHHGKTPPCADLIIEKQIPRIVIGCQDPFSKVAGKGIQKLRDAGCEVIV 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI--TGFISKNQVHL 185 ++E+E + + ++T R +I LK A S D I + P+ + ++ VH Sbjct: 121 GVLETECRELIRKFITFHTLHRPYIVLKWAESADGFIDLERTEGQPVILSTPLTSMLVHK 180 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 RA+SDAI+VG T L D+P LT R H+P+RI++D + L S + + Sbjct: 181 KRAESDAIMVGTRTALLDNPALTVR--NWHGHNPVRIVMDRNHSLPQTSHL--SDNSVST 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ TE+ K+N+ I + L ++L+ L R + SL++EGG + SFI Sbjct: 237 LVFTEHPRA------GKENLEYITLNYQTDILPQILSALYQRNLQSLMIEGGRILLESFI 290 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDV 350 S + D +I+ +S ++ G+ +P + EK+F R Y + Sbjct: 291 RSGIWDEVIIEKSDKLL-YSGVKAPEISDKISYSEEKHFCTTFRHYLKRNT 340 >gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Acidovorax sp. JS42] gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Acidovorax sp. JS42] Length = 366 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 113/356 (31%), Positives = 171/356 (48%), Gaps = 15/356 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 + AL + + L++ NP V C+I +G ++G+G T G HAEV AL +A G Sbjct: 3 HIDQALGLAAQALFLSNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGC 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPC+H GR+ PC +I+ GI VV + DP+ V+G+G L G+ Sbjct: 63 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQ 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ + + +R V + +K A S D + +A S IT ++ H Sbjct: 123 VEVGPGGTQSRELNIGFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L G+GTVLADDP L R P +I+D + ++++ A Sbjct: 183 AWRARACAVLTGVGTVLADDPRLDVR-EIATPRQPHLVIVDSLLQTPANARLFDVADR-R 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V+I T D A A R + II DL LL L GV L +E G + Sbjct: 241 VLIYTARPDAAGAAALRARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNG 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ LVD ++LY + I++G+G PL+ G D+ + Sbjct: 301 SFLREGLVDELLLYLAPIMLGQGAQGLSNWGPLQTLADGIPMQFQAVQQVGPDLRV 356 >gi|305667257|ref|YP_003863544.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170] gi|88709304|gb|EAR01537.1| putative riboflavin biosynthesis protein [Maribacter sp. HTCC2170] Length = 350 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 172/359 (47%), Gaps = 22/359 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S D +M AL ++ +G T+ NP V ++V + +I G T+ G HAEV A+ Sbjct: 2 SLDHLYMQRALLLAKNGLGTTAPNPMVGAVLVCNEKIIAEGYTSPYGGAHAEVNAINSVE 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ +T YVTLEPCSH+G++PPCA II+ I RVV+ D +V+G+G + L + Sbjct: 62 DKSILANSTLYVTLEPCSHHGKTPPCADLIIKHNIPRVVIGTLDSHEKVAGKGKRMLEES 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPIT 175 G + ++E+ K +LT KR +I LK A + D I A IT Sbjct: 122 GCKVTLGVLENACKEHHKRFLTFHQRKRPYIILKWAQTSDGFIAPDKNKRKAKAEPYWIT 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 S+ VH R++ AILVG TVL D+P+L R SP+RI++D + + Sbjct: 182 NSYSRQIVHKWRSEEQAILVGTKTVLDDNPKLNTR--SWAGTSPIRIVMDKKLNIGSNHH 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 ++ + +P I++T+N D A +I ++ +L R + S+L+EGG Sbjct: 240 VLDVS--SPTIVITQNTDEDKRAANIAY--EVIDFSKNQTTQICQVLYKRNIISVLIEGG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A +FI+ L D ++ + G+ +P N + SD+ Y Sbjct: 296 AKTLQTFIDENLWDEARVFTG-KNNFKKGLKAP------RMNKEAFKSITIESDILNIY 347 >gi|282866177|ref|ZP_06275224.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE] gi|282558961|gb|EFB64516.1| riboflavin biosynthesis protein RibD [Streptomyces sp. ACTE] Length = 366 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 116/362 (32%), Positives = 181/362 (50%), Gaps = 14/362 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+++ G G G G PHAE+ AL E Sbjct: 3 TTADITAMRRAIALAARGLGATSPNPVVGCVVLDAAGQPAGEGFHRRAGGPHAEIHALRE 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARG TAYVTLEPC+H GR+ PCAQ +++ GIRRVV V DP+ + +G ++ Sbjct: 63 AGERARGGTAYVTLEPCNHTGRTGPCAQALLDAGIRRVVYAVGDPNPQATGGADTLRAEG 122 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ E + A+LT R ++ K A + D + A S IT S+ Sbjct: 123 VQVEQGLLADEAETGNTAWLTSVRLGRPYVLWKYAATLDGRVAAADATSRWITSAESRAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH LRA++DA++VG GT ADDP+L R P+R+++D + ++++ + Sbjct: 183 VHRLRAEADAVVVGSGTARADDPQLGVR-GIDGAVQPLRVVVDTGATAVKPGARVLDGS- 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 AP ++ D L D R D+ LL L RGV S+L+EGG +A Sbjct: 241 -APTLVAVAEDADASHLPKDAVLRLPRAADGRGLDVPALLAALHARGVRSVLLEGGPVLA 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEY 354 SF+ + VD+++ Y + +++G G P+ L + + G D+ + Sbjct: 300 GSFVAAGTVDTVVGYLAPVLLGAG--PAALADAGITTLSQALRLAVTETVRIGPDLRVTA 357 Query: 355 IG 356 + Sbjct: 358 VP 359 >gi|114765495|ref|ZP_01444605.1| riboflavin biosynthesis protein RibD [Pelagibaca bermudensis HTCC2601] gi|114542205|gb|EAU45236.1| riboflavin biosynthesis protein RibD [Roseovarius sp. HTCC2601] Length = 350 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 131/345 (37%), Positives = 184/345 (53%), Gaps = 11/345 (3%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 +G NP+V C+IVKDG V+GRG TA GG PHAE QAL +AGE ARGATAYVTLEPCSH Sbjct: 1 MGQCWPNPAVGCVIVKDGRVVGRGATAPGGRPHAEPQALAQAGEAARGATAYVTLEPCSH 60 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH-A 140 +G++PPCA+ +++ G+ RVV + D D RVSG+G L + GI V + +E H Sbjct: 61 HGKTPPCAEALVKSGVARVVAPLADNDARVSGQGFAHLRKHGIEVTTGVLAEDAARDHAG 120 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + R R +TLK+A S D I A S ITG ++ VH LRA DA++VG GT Sbjct: 121 FFLRNDHGRPLVTLKLANSFDGRIATATGESQWITGPEARRYVHGLRASHDAVMVGAGTA 180 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALA 259 ADDP LT R G + P+R+I+ + L S + +A PV + +D + A Sbjct: 181 RADDPALTVRGWG-EVQQPVRVIVSRLIDVPLMSTLASSAREVPVWLAHGSDAASMTKRA 239 Query: 260 FRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ ++ C D LL+ L G+T + EGG +A S + + LVD ++ + Sbjct: 240 WQSCGAKLLQCKVSGGRIDPHALLSALGKEGLTRVFCEGGGQLAASLLAADLVDELVGFT 299 Query: 316 SQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + I +G G P ++ F G DV + Sbjct: 300 AGIAVGAEGRPGIGAMGVDRLAEAPRFELEEVRAVGGDVLHRWRR 344 >gi|326335510|ref|ZP_08201697.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692276|gb|EGD34228.1| riboflavin biosynthesis protein RibD [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 360 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 114/357 (31%), Positives = 169/357 (47%), Gaps = 25/357 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M L +R +G T NP V +IV G +IG G G PHAEV A+ + Sbjct: 5 IDEKYMQRCLFLARKAMGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAITSVRD 64 Query: 66 E--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + + +T YV LEPC H+G++PPCA IIE GI R+V+ D +V+G+G+Q L Q G Sbjct: 65 KSLLKESTLYVNLEPCVHFGKTPPCADLIIEKGIPRIVIGCTDIYSKVAGKGIQRLQQAG 124 Query: 124 -IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG---MAGCGSVPITGFIS 179 +V ++E E + + T +KR +I LK A ++D I V IT S Sbjct: 125 REVVLDVLEQESQALNIRFFTFHSQKRPYIILKWAQTRDGFIAPQQRKNKAPVWITNDFS 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + HL RAQ AILVG TV+ D+P LT R ++P+RI++D L + + Sbjct: 185 QQLTHLWRAQEGAILVGKSTVVQDNPSLTTRY--WVGNTPLRIVIDASHSLPDSLAVFQ- 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297 P ++ T + N++ + + K++ L + V SL+VEGG Sbjct: 242 --KMPTVVFTSKE------MTDTFNVSFVPFNPSFSMPKQVCNYLYEKNVQSLIVEGGTQ 293 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 V FIN RL D ++ G+ +PL + V R D Y Sbjct: 294 VLQQFINERLWDEARIFIGNKRF-SEGVKAPLLQDG-----NLVERQDIQGDSLFVY 344 >gi|150010266|ref|YP_001305009.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis ATCC 8503] gi|149938690|gb|ABR45387.1| riboflavin biosynthesis protein ribD [Parabacteroides distasonis ATCC 8503] Length = 359 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 174/338 (51%), Gaps = 20/338 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E + A++T Q + R +I LK A S+D I ++ Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293 ++ + + +I TE + ++N+ I D +++L L R + SLLVE Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 GG + +SF+ + + D + + + + G+ +P+ Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHTPMLG 327 >gi|325977849|ref|YP_004287565.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325177777|emb|CBZ47821.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 351 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 181/359 (50%), Gaps = 21/359 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA E Sbjct: 3 ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI Sbjct: 63 ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +++E+E + Y KR ++ LK AVS D I + +T + VH Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K Sbjct: 182 DERDDYQAILVGADTVLIDNPQLF--GAGTSLYPPVRVILDETGRIFDKRELQIFKNQS- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 APV I + +A +I +I + +L L + + S+ VEGGA V +F Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|306830959|ref|ZP_07464121.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304426982|gb|EFM30092.1| riboflavin biosynthesis protein RibD [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 351 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 123/359 (34%), Positives = 181/359 (50%), Gaps = 21/359 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA E Sbjct: 3 ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILYCEAPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI Sbjct: 63 ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +++E+E + Y KR ++ LK AVS D I + +T + VH Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K Sbjct: 182 DERDDYQAILVGADTVLIDNPQLF--GAGTSLYPPVRVILDETGRIFGKRELQIFKNQS- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 APV I + +A +I +I + +L L + + S+ VEGGA V +F Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|187735315|ref|YP_001877427.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC BAA-835] gi|187425367|gb|ACD04646.1| riboflavin biosynthesis protein RibD [Akkermansia muciniphila ATCC BAA-835] Length = 356 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 170/371 (45%), Gaps = 41/371 (11%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-- 62 + D +M+ A++ + +GLTS NP V +IV + VIG G G PHAE +A+ + Sbjct: 10 NQDDCWMNMAIKLASNGIGLTSPNPCVGAVIVHENQVIGSGFHKKAGLPHAEREAIADGV 69 Query: 63 AGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A A +T YVTLEPCS G++PPC I++ +RVV +DP+ + G L Sbjct: 70 ANGNAPLFADSTLYVTLEPCSTSGKTPPCTDAILKYRFKRVVYGSEDPNPKHRGAAADIL 129 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 Q GI + ++E E + + +E R + K A+S D I + S +T Sbjct: 130 EQAGIKVTRGVLEKECDRLIRRFRVNMLEGRPWVIAKSAMSLDGRISRSPERSQWLTNEK 189 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHF-KLSLD 233 S++ VH LRA+ DA+L G TV D+P LT R + P RIIL + D Sbjct: 190 SRSFVHTLRAECDAVLTGGNTVRLDNPSLTIRKPDRPVSPLKEQPWRIILTHDASSIPAD 249 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLV 292 S + ++V +N+ +LL L + + ++L+ Sbjct: 250 SICLTDEFRDRTLVV--------------ENVFSYL-------ELLKKLYNDKKIGTILL 288 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSD 349 E G + F+ + LVD + + + I+IG G P P E E + + FG D Sbjct: 289 EAGGCLVREFLKAGLVDEWVGFYAPIIIGGGADGVAPGPFLEH--EAHLEQPVVNIFGGD 346 Query: 350 VCLEYIGKNLC 360 VC+ ++C Sbjct: 347 VCIRG---DIC 354 >gi|73662304|ref|YP_301085.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72494819|dbj|BAE18140.1| riboflavin specific deaminase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 347 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 101/354 (28%), Positives = 170/354 (48%), Gaps = 14/354 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 ++++ A++ ++ G T NP V ++V G ++G G G HAEVQAL+ A + A+ Sbjct: 3 QYLNYAIQLAQMVEGQTGLNPPVGAVVVNRGRIVGIGAHLKKGDKHAEVQALDMAKDNAK 62 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 G T Y++LEPC+H+G +PPC IIE GI RVV V D + G L + GI V+ Sbjct: 63 GGTIYISLEPCTHFGSTPPCVNKIIEAGINRVVYAV--KDTTLPSNGDSILQEAGIDVEF 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + + + +T+K++ S D S IT + K V LR Sbjct: 121 RHQPDAENLYKDFFITKRQSVPMVTVKVSCSLDGKQATDTGESKWITNKLVKKDVFKLRH 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+L G GT+ AD+P+ T R+ + +P+++IL + + + I K P+ I Sbjct: 181 HHDAVLTGSGTLNADNPQYTTRIE--EGKNPIKVILAQNGNIDFNLDIFKNTN-TPIWIY 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T+N+ V + +++ II ++ ++ L +G+ LLVE G V F+ S Sbjct: 238 TQNEALVTDI----EHVEIIQLTNCSVENIMKNLYEKGIGRLLVEAGPTVTSEFLQSNYT 293 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLEYIGK 357 + +I+Y + +IG G + F V ++ LE K Sbjct: 294 NKLIIYYAPKIIGGSGKYQFFHTDKIIDLSEVPQFEIVDSQMLEQNLKLELRKK 347 >gi|91216505|ref|ZP_01253471.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC 700755] gi|91185299|gb|EAS71676.1| riboflavin biosynthesis protein ribD [Psychroflexus torquis ATCC 700755] Length = 347 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 169/350 (48%), Gaps = 15/350 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++ L + +G T NP V C+IV + +IG G G HAEV+A+ ++ Sbjct: 5 EFYIKRCLELAANGLGTTYPNPLVGCVIVYNDRIIGEGWHIKAGDDHAEVRAINSVKDQS 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGI 124 + + YVTLEPCSHYG++PPC+ IIE I ++V+ DP +V+G G+ + L+ K Sbjct: 65 LLKKSILYVTLEPCSHYGKTPPCSDLIIEKKIPKIVIGTLDPFAKVAGMGIKKLLAAKRS 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKN 181 + + E + + T ++R + LK A + I IT S+ Sbjct: 125 VTVGVCEEACEELNKRFFTFHRKQRPFVILKWAETTHGFIAPTEQQKGDIFWITNAYSQQ 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R++ AILVG T L D+P+L R + +P R+++D KL ++ T+ Sbjct: 185 LVHKWRSEEQAILVGTQTALKDNPKLNVR--HYEGKNPTRVVIDRALKLPSSLALVDTSQ 242 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 P II D + + + + + +++L+ L +G+ S+++EGGA S Sbjct: 243 --PTIIFH--DHKLTKASQYNLSFEALDFERNLPEQILSSLYEKGLQSVIIEGGAMTIQS 298 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSD 349 FI+ L D ++ + I + G+ P+ + +N + +YF +D Sbjct: 299 FIDHELWDEARVFIGKNEI-KDGLKGPVLKQKATRNEWLEGDQLNYFQND 347 >gi|297621291|ref|YP_003709428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Waddlia chondrophila WSU 86-1044] gi|297376592|gb|ADI38422.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Waddlia chondrophila WSU 86-1044] Length = 339 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 122/355 (34%), Positives = 177/355 (49%), Gaps = 28/355 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M A+ NP V C++VK+G ++G G G PHAEV AL EAG+ Sbjct: 2 DDRRWMEMAIAEGLKGRLDAPPNPWVGCILVKNGQIVGLGHHPECGLPHAEVYALREAGQ 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPC H GR+ PC +IE G+ RVVV V+DPD +VSG G+ L GI Sbjct: 62 NARGATAYVTLEPCVHTGRTLPCIHALIEAGVARVVVGVEDPDPKVSGSGIAALKIAGIK 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + ++ L YL + R + K A+S D + S I+ ++ H Sbjct: 122 VTVGVEREAVELSLAPYLHHRRTGRPFVIAKTALSIDGRAAASDKTSQWISCEAARRDAH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 +RA+S AIL+G GT + D P+LT R +N L + P+R++LDP+ K+ DS + LA Sbjct: 182 EMRAESQAILIGAGTAVKDSPQLTVRQVNKLPKKQPLRVLLDPNGKVPHDSPLYDLD-LA 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P ++ +E +P +L+IL +GV LL+EGG F+ Sbjct: 241 PTLVFSEKMEPEK---------------------ILSILGEKGVIQLLIEGGPTTITQFL 279 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEY 354 L+D +I+Y ++G G+P G + G+ V Y Sbjct: 280 QQHLIDRLIVYTGPCLLGSDGLPGFGSMGICSMENALRLHLLESSAIGNSVKSVY 334 >gi|126663421|ref|ZP_01734418.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BAL38] gi|126624369|gb|EAZ95060.1| riboflavin biosynthesis protein RibD [Flavobacteria bacterium BAL38] Length = 346 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 14/343 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++ + ++ +G T NP V +IV + +IG G G PHAEV A+ ++ Sbjct: 5 EFYIKRCIELAKNGLGTTYPNPLVGSVIVYENKIIGEGWHKKAGEPHAEVNAVNSVKDKS 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + AT YV+LEPCSH+G++PPC II I VVV DP +V+G G++ L + G Sbjct: 65 LLKEATIYVSLEPCSHFGKTPPCCDLIIVNEIPNVVVGTVDPFAKVAGNGIKKLVESGKK 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181 + ++E E + T ++R +I LK A + + I IT S+ Sbjct: 125 VTVGILEDECNELNKRFFTFHQKQRPYIILKWAETANGFIAPISKEEKSPIWITNQYSRQ 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R + AILVG TVL D+P+L R E++P+R++LD K+S + + Sbjct: 185 LVHKWRTEEQAILVGTNTVLDDNPKLDAR--DFSENNPIRVVLDKSGKVSKNYHV--KDN 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I +TE+ + N D ++ + IL + S+++EGG S Sbjct: 241 SQKTIFITES---EKYASTENCNYENTIFDVNLVRSICDILYKNNIQSIIIEGGTKTIQS 297 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 FI++ L D ++R + + + GI +P+ G F + + Sbjct: 298 FIDANLWDEAKVFRGKKIF-QNGIIAPIISGNPVARFEIMNDE 339 >gi|126462807|ref|YP_001043921.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC 17029] gi|126104471|gb|ABN77149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides ATCC 17029] Length = 356 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 133/354 (37%), Positives = 195/354 (55%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + +L R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARAAHAGFLKRVTEGLPFVTLKLAATVDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + L D ++ + + +IGE G + L + D G D+ + Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDMVGGDLLARW 353 >gi|163852584|ref|YP_001640627.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens PA1] gi|163664189|gb|ABY31556.1| riboflavin biosynthesis protein RibD [Methylobacterium extorquens PA1] Length = 371 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 11/363 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL AG Sbjct: 8 ALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAVGGRPHAEPLALAMAG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E A GAT YVTLEPCSH+GR+PPC I GI RVV ++DPD RV+GRG L GI Sbjct: 68 EAAHGATLYVTLEPCSHHGRTPPCTDATIAAGIARVVTAIEDPDPRVAGRGHAGLRAAGI 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ E + +R R + LK+A ++D + + ITG ++ V Sbjct: 128 TVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGSVADGAV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A Sbjct: 188 HLWRAHADAIMVGIGTARADDPSLTVRLPGLAERSPLRIVLDSTLRLNPASHLVRGARDL 247 Query: 244 PVIIVTENDDPVLALAFRK------KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A + I DL L L RG+T + EGG A Sbjct: 248 PTLVLTGRGAPAHARRMLASFGVEIAFVPIDAAGRIDLPAALKALAERGLTRICSEGGPA 307 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + L+D+ L + +GE GG+P+ L + V +G D + Sbjct: 308 LADALAAHDLIDACTLITGSVTLGEAGGLPALGANLARRLADGLLSVVETRDYGPDTAVT 367 Query: 354 YIG 356 Y Sbjct: 368 YER 370 >gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont of Hydra magnipapillata] Length = 363 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 160/353 (45%), Gaps = 20/353 (5%) Query: 19 RWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVT 75 R + NP+V C++ KD +G G T G PHAEV AL +A E+ GATAYVT Sbjct: 2 RRCSYEANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVT 61 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMES--- 132 LEPCSH+GR+ PC +I+ GI++VV DP+ V+G G L G+ V+ + Sbjct: 62 LEPCSHHGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVEVLPSEHPL 121 Query: 133 --EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 E + + +R + K + +K+A S D + S ITG ++ H RA+S Sbjct: 122 AIESRELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARS 181 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 AIL GIGTVLAD P L RL P +++D + LD+ + Sbjct: 182 CAILTGIGTVLADRPRLDVRLVE-TPRQPHLVVVDSKLETPLDAPFFIAGRAVFIYAAAP 240 Query: 251 NDDPVLALAFRKKNINII--------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 ND AL + I+ DL ++ L R + L VE G + S Sbjct: 241 NDAKRAALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSL 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + LVD ++Y + ++G+G PL E + G D+ + Sbjct: 301 VREGLVDEFVVYVAPRLLGQGAGMFQLGPLTELSQGVELEFKSTEMLGPDLRV 353 >gi|184155252|ref|YP_001843592.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956] gi|183226596|dbj|BAG27112.1| riboflavin biosynthesis protein [Lactobacillus fermentum IFO 3956] Length = 352 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 162/351 (46%), Gaps = 9/351 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-A 63 S D +FM AL + T NP V +IVKDG ++ G G HAE A+ + + Sbjct: 2 SSDEQFMQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLS 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ GAT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L G Sbjct: 62 NEQLAGATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + +++ + + Y ++R IT K A+S D + A + IT ++ Sbjct: 122 IDVEVGLLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRL 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH RA AI+VG GTVLADDP L C L P+R+ILD + L + + T Sbjct: 182 VHQERADYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDA 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP +VT N ++ + D +LL + SL VEGG AV Sbjct: 240 SAPTWLVTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTE 297 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + V+ +I Y +IG+ G+ V G D+ + Sbjct: 298 LFQAVPVNQLITYLDPQIIGDQGLAGAQFPAGTAFTHRTV--TQLGDDIRI 346 >gi|77463964|ref|YP_353468.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides 2.4.1] gi|77388382|gb|ABA79567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodobacter sphaeroides 2.4.1] Length = 356 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 194/354 (54%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTCPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAAGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + + R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARTAHAGFQKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + L D ++ + + +IGE G + L + D G D+ + Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARW 353 >gi|262382448|ref|ZP_06075585.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B] gi|262295326|gb|EEY83257.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 2_1_33B] Length = 345 Score = 291 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 175/338 (51%), Gaps = 20/338 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E ++ A++T Q + R +I LK A S+D I ++ Sbjct: 121 EAGVEVVTGVMEEEARVLNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRTDVSEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293 ++ + + +I TE + ++N+ I D +++L L R + SLLVE Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 GG + +SF+ + + D + + + + G+ +P+ Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327 >gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Azoarcus sp. BH72] gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Azoarcus sp. BH72] Length = 363 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 116/339 (34%), Positives = 174/339 (51%), Gaps = 13/339 (3%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79 + T+ NP V C++V+DG ++G G G HAEV AL AGE A GATAYVTLEPC Sbjct: 20 NGLCTTTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGERAAGATAYVTLEPC 79 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV-DRMMESEGKIFL 138 SH+GR+PPC + ++ G+RRVV ++DP+ V+G GL L GI ++ESE + Sbjct: 80 SHFGRTPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELN 139 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 +++R R + LK A + D +A S ITG +++ H RA++ AIL GIG Sbjct: 140 IGFISRMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIG 199 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 TV DDP+LT R E P+R+++D ++ +++I++ APV+I T ++ A Sbjct: 200 TVREDDPQLTVR-GVPCERQPLRVVVDARLEIGREARILQG---APVLIATAIEEGERAA 255 Query: 259 AFRKKNINII----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 R ++ L LL L RG+ L VE G + S + VD ++LY Sbjct: 256 ELRAAGHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLY 315 Query: 315 RSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSD 349 + +++G+ S L G D Sbjct: 316 MAPMLVGDSAQGMFNLSALTSLDQALRLDIRDMRRIGED 354 >gi|237725969|ref|ZP_04556450.1| riboflavin biosynthesis protein ribD [Bacteroides sp. D4] gi|229435777|gb|EEO45854.1| riboflavin biosynthesis protein ribD [Bacteroides dorei 5_1_36/D4] Length = 355 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 17/350 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFISKN 181 + ++E E + + ++T KR +ITLK A S D I G + ++ ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ + Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELF--SG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T +++ L +++ +L + + SLLVEGG+ + S Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLD---FSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 FI+S L D + + + + + GI +P ++K + + + YFG ++ Sbjct: 297 FIDSSLWDEAFIEKVPLCL-KNGIEAP----SIQKKYFKLNKIYFGREIM 341 >gi|212695385|ref|ZP_03303513.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855] gi|237711578|ref|ZP_04542059.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA] gi|265753006|ref|ZP_06088575.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA] gi|212662020|gb|EEB22594.1| hypothetical protein BACDOR_04934 [Bacteroides dorei DSM 17855] gi|229454273|gb|EEO59994.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 9_1_42FAA] gi|263236192|gb|EEZ21687.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_33FAA] Length = 355 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 178/350 (50%), Gaps = 17/350 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++S L+ + + T+ NP V +IV +IG G G HAEV A+ +E Sbjct: 4 DEKYISRCLQLAHNGLCNTAPNPMVGAVIVYHDTIIGEGYHIRCGEAHAEVNAIRSVKDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + +T YV+LEPCSHYG++PPCA IIE I +VV+ DP V+GRG++ L + GI Sbjct: 64 NLLKESTIYVSLEPCSHYGKTPPCADLIIEKKIPKVVIGCMDPFSLVAGRGIEKLRKAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM--IGMAGCGSVPITGFISKN 181 + ++E E + + ++T KR +ITLK A S D I G + ++ ++ Sbjct: 124 EVTVGVLEEECRHLIRRFITFNTLKRPYITLKWAESTDGFIDINRTGGKPIKLSNPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH RA+ DAILVG T L D+P L+ R P+R+++D L D ++ + Sbjct: 184 LVHKKRAEHDAILVGRRTALLDNPSLSTR--NWYGKHPVRLVIDKELTLPRDLELF--SG 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + T +++ L +++ +L + + SLLVEGG+ + S Sbjct: 240 RIKTFVFTRKSPHQPNTLTEYISLD---FSKDILPQIMEVLYQKKIQSLLVEGGSILLQS 296 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 FI+S L D + + + + + GI +P ++K + + + YFG ++ Sbjct: 297 FIDSSLWDEAFIEKVPLCL-KNGIEAP----SIQKKYFKLNKIYFGREIM 341 >gi|197123236|ref|YP_002135187.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K] gi|196173085|gb|ACG74058.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter sp. K] Length = 392 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 126/355 (35%), Positives = 182/355 (51%), Gaps = 7/355 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG A Sbjct: 26 ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V Sbjct: 86 RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ +E + T E R +TLK AV+ D I + ++G ++ VH L Sbjct: 146 KGVLRAECDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DA+LVG GT ADDP LT RL P+R++LD L + + AP + Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264 Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + P + + DL+ LL L RGV LLVEGGA V F+ + Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356 LVD + ++ + + G G+P G V + G DV + + Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDVLVTGVP 379 >gi|255535790|ref|YP_003096161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Flavobacteriaceae bacterium 3519-10] gi|255341986|gb|ACU08099.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Flavobacteriaceae bacterium 3519-10] Length = 342 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 165/326 (50%), Gaps = 15/326 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 D +M + ++ +G T NP V +IV DG +IG G G PHAE+ A+ + Sbjct: 3 DELYMKRCIELAKKALGQTYPNPMVGSVIVHDGRIIGEGFHQKAGSPHAEINAINSVKDP 62 Query: 66 -EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 R +T YV+LEPC+H+G++PPCA + E G ++VV+ + D +V+G+G Q L GI Sbjct: 63 SLLRDSTIYVSLEPCAHFGKTPPCADKLAEIGFKKVVIGILDSHDKVNGKGKQILENAGI 122 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V ++ +E + Q +KR I LK A S D I G I ++K V Sbjct: 123 EVVTDVLRNECFDLNKRFFAFQEKKRPFILLKWAESADRFID-KDFGPTQIGNALTKQYV 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR++ AILVG T L D+P LT R + +P+RI++D K+ I + A Sbjct: 182 HTLRSEEHAILVGTNTALTDNPSLTVR--EISGRNPVRILVDFDLKVPTSFNIYNSE--A 237 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSF 302 P ++ + V + +I+ I + L++ L + + S++VEGG F Sbjct: 238 PTLVFNGVKNSV------EGHISFIKISKDNFPATLMSQLYEKQIQSVIVEGGRFTLQQF 291 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328 I++ L D ++ R++ + G +P Sbjct: 292 IDTDLWDETVIIRNENINLTNGTKAP 317 >gi|294811515|ref|ZP_06770158.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] gi|294324114|gb|EFG05757.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] Length = 449 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 157/315 (49%), Gaps = 7/315 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL Sbjct: 64 TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 123 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + G L Sbjct: 124 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAA 182 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R + K A + D I S IT ++ Sbjct: 183 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 242 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA +DA+++G GT+ DDP+L R P+R++LD ++ ++++ A Sbjct: 243 DVHRLRAGADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA- 300 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I V E D + R DL LL L RGV S+L+EGG +A Sbjct: 301 APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLA 360 Query: 300 HSFINSRLVDSIILY 314 +F+ +R VD +I Y Sbjct: 361 GAFVAARAVDKVIGY 375 >gi|255012465|ref|ZP_05284591.1| riboflavin biosynthesis protein ribD [Bacteroides sp. 2_1_7] Length = 359 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 105/342 (30%), Positives = 175/342 (51%), Gaps = 16/342 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MVEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E + +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLKDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E + A++T Q + R +I LK A S+D I + ++ Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVLEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 ++ +L +I TE + I + ++++L L R + SLLVEGG Sbjct: 239 LLDGSLR--TLIFTEKE----VENREDVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVEGG 292 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 + +SF+ + + D + + + + G+ +P+ E + + Sbjct: 293 TQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLEKGVVRR 333 >gi|298374645|ref|ZP_06984603.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19] gi|298269013|gb|EFI10668.1| riboflavin biosynthesis protein RibD [Bacteroides sp. 3_1_19] Length = 359 Score = 291 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 173/338 (51%), Gaps = 20/338 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + ++M+ + ++ G S NP V ++V G +IG G G HAEV A+ Sbjct: 1 MIEVEEKYMARCIELAKGGRGNVSPNPMVGAVVVHKGRIIGEGFHRKCGEAHAEVNAIAS 60 Query: 63 AGEE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +E +T YV+LEPCSHYG++PPCA+ II GI RVVV DP VSGRG++ L Sbjct: 61 VKDESLLTDSTIYVSLEPCSHYGKTPPCAELIIRKGIPRVVVGCLDPFPEVSGRGVRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----IT 175 + G+ +V +ME E + A++T Q + R +I LK A S+D I ++ Sbjct: 121 EAGVEVVTGVMEEEARALNKAFMTLQTKGRPYIILKWAQSEDGFIDRLRMDVSEPVTVLS 180 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 + VH LR++ AI+VG T L D+P L R +SP+R++LD + + Sbjct: 181 SPETSRLVHKLRSEVAAIMVGTRTALLDNPSLNVR--HWSGNSPVRVVLDRRLVIPDSYR 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVE 293 ++ + + +I TE + ++N+ I D +++L L R + SLLVE Sbjct: 239 LLNGS--SRTLIFTEKE------VENRENVEYIRIDFEGPVIRQVLDHLAVRKLDSLLVE 290 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 GG + +SF+ + + D + + + + G+ +P+ Sbjct: 291 GGTQLINSFVEADVWDEARVETAPVRL-YQGVHAPMLG 327 >gi|228472970|ref|ZP_04057727.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis ATCC 33624] gi|228275552|gb|EEK14329.1| riboflavin biosynthesis protein RibD [Capnocytophaga gingivalis ATCC 33624] Length = 347 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 158/331 (47%), Gaps = 16/331 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M L + +G T NP V +IV G +IG G G PHAEV A+ Sbjct: 2 TIDQRYMQRCLSLAGKALGYTYPNPLVGSVIVHQGKIIGEGWHTKAGEPHAEVNAIASVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + + + YV LEPC+H+G++PPCA IIE I +VV+ D +V+G+G++ L + Sbjct: 62 DSSLLKESVLYVNLEPCAHFGKTPPCADLIIEKEIPKVVIGCMDIFSKVAGKGIERLQKA 121 Query: 123 G-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178 G +V ++E+E + + T + R +I LK A +++ +I I+ Sbjct: 122 GREVVVGVLENECQALNTRFFTFHSKGRPYIILKWAQTRNGLIAPLHQEQQAPVWISNEF 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ HL RA+ AILVG TV D+P LT R +P+R++++ L + + Sbjct: 182 SQQLTHLWRAEEGAILVGRTTVERDNPSLTVR--HWVGKNPLRLVIEGEHSLLDTFNVFQ 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 P ++ + P + + D ++ L R + SL+VEGGA V Sbjct: 240 GE---PTVVFSSKQSP----NTEHVSYQTLSSDLSMPNEVCNYLYDRQIQSLIVEGGAQV 292 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 FI+ L D ++ + GI +PL Sbjct: 293 LQQFISEGLWDEARIFVGKSQF-SEGIKAPL 322 >gi|217076388|ref|YP_002334104.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B] gi|217036241|gb|ACJ74763.1| riboflavin biosynthesis protein RibD [Thermosipho africanus TCF52B] Length = 343 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 109/353 (30%), Positives = 166/353 (47%), Gaps = 19/353 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +FM AL+ ++ G S NP V +IVKDG +I G G HAE A+ A Sbjct: 2 EKFMKLALKLAKKGTGRVSPNPLVGAVIVKDGKIISTGYHKRYGDFHAERNAILNAKTSL 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G+T +V LEPC H+G++PPC II+ I +V + + DP+ V+G+G+ L + GI V Sbjct: 62 EGSTLFVNLEPCCHHGKTPPCTDLIIKSKISQVFISILDPNPLVNGKGVDILRKNGIEVH 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E ++ +K ++ LK+A++ D I S IT N H L Sbjct: 122 VGLLEKEASYLNRVFIKFITKKTPYVALKVAMTLDGFICDNLGKSKWITKNN-FNISHNL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R AI+VG TVL D+P+LTCR G +P+RIILD KL + I Sbjct: 181 RNFFTAIMVGANTVLKDNPQLTCRNGG---RNPIRIILDYEGKL-AGKNFSVFDDQSRTI 236 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + K N Y + R + +L L + S+L+EGGA+V F Sbjct: 237 VFSSR--------CEKYNGAECYPETR-PEDILERLYSLNIDSVLIEGGASVLSQF--YD 285 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF--MCVRRDYFGSDVCLEYIGK 357 D + L+ + + G+G E Y+++ F + ++ LE I Sbjct: 286 FSDELHLFYAPKIFGKGLSAFSGIEKYIDEEFDLKIKKIRRLKNEFYLEVIKN 338 >gi|332558836|ref|ZP_08413158.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N] gi|332276548|gb|EGJ21863.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides WS8N] Length = 356 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 133/354 (37%), Positives = 196/354 (55%), Gaps = 11/354 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL +AG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAQAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPCA+ +I G+ RVV DPD RVSGRG L + GI + +R+ Sbjct: 61 TAYVTLEPCSHHGRTPPCAEALIAVGLARVVTATGDPDPRVSGRGHAMLREAGIAVTERV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E ++ +L R E +TLK+A + D I A S ITG +++ VH +R + Sbjct: 121 LEAEARVAHAGFLKRVTEGLPFVTLKLAATLDGRIATASGESRWITGSLARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT +ADDP+L+ R G H P+RI++D + + DS++ +TA PV + Sbjct: 181 HDAVMVGVGTAIADDPDLSVRDLG-SGHQPVRIVVDSLLRHAPDSRLGRTARQVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P A A + I+ D + + +L L G+T + EGGA + + + Sbjct: 240 GPAAPEAARAAWAASGAILLECPAGPDGLEAEAVLRRLAAEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + L D ++ + + +IGE G + L + D G D+ + Sbjct: 300 AGLCDELVTFTAGKLIGEEGRGAMGALRLARLAEAPAYRLASLDTVGGDLLARW 353 >gi|257869314|ref|ZP_05648967.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2] gi|257803478|gb|EEV32300.1| riboflavin-specific deaminase [Enterococcus gallinarum EG2] Length = 359 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 104/357 (29%), Positives = 166/357 (46%), Gaps = 19/357 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65 +M A+ + G T TNP V +IVKD ++ G G PHAE A++ E Sbjct: 3 ETYMKRAISEALKGKGQTFTNPLVGAVIVKDEEIVAVGSHMAYGQPHAEKNAIDSCSSPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC HYG+ PPC I++ GI++VV+ DP+ VSG+G +L +G+ Sbjct: 63 KLIDSTIYVTLEPCHHYGKQPPCTTAILQSGIKKVVIGQLDPNPLVSGKGKAFLESQGVA 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++E E + Y T E+R + LK A + D I +A ITG + +V Sbjct: 123 VITGVLEKEVREINRHYNTYHEEQRPFVALKQATTLDGKIALA-GQRARITGEAALRRVR 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R+ AIL+G T L D+P L R++LD + + +P Sbjct: 182 QERSDYQAILIGSRTALIDNPTLRTEAAFPTY----RVVLDRKGETLKQQLTLFEDTSSP 237 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V++ T + ++NII L ++ L R + S+ VEGG+++ +F+ Sbjct: 238 VLVFTTK----KVQSVFSNHVNIITTPSLTLSFVMKELYRRKIQSVYVEGGSSIHDAFLA 293 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 D +I Y S +IG G S + + F V +E +G+ L + Sbjct: 294 DGYWDQVITYLSPKLIGGNGTASFASSREVNQMFALTE-------VTVEPVGEELRI 343 >gi|87161517|ref|YP_494408.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195585|ref|YP_500391.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87127491|gb|ABD22005.1| riboflavin biosynthesis protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203143|gb|ABD30953.1| riboflavin biosynthesis protein RibD [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 334 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 111/341 (32%), Positives = 161/341 (47%), Gaps = 14/341 (4%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G T NP V ++VK+G ++G G G HAEVQAL+ A + A GAT Y+TLEPCSH Sbjct: 3 QGQTGVNPPVGAVVVKEGRIVGIGAHLRKGDKHAEVQALDMAQQNAEGATIYITLEPCSH 62 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 +G +PPC II+C I +VV D + G + L GI V+ + + + Sbjct: 63 FGSTPPCVNKIIDCKIAKVVYAT--KDNSLDTHGDETLRAHGIEVECVDDERASQLYQDF 120 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + ++ IT+K++ S D S IT K V+ LR + DA+L G TV Sbjct: 121 FKAKAKQLPQITVKVSASLDGKQANDNGQSQWITNKEVKQDVYKLRHRHDAVLTGRRTVE 180 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 DDP+ T R+ +P+++IL + + +I + P+ I TEN + L Sbjct: 181 LDDPQYTTRIQ--DGKNPIKVILSKSGNIHFNQQIYQDES-TPIWIYTENPN----LTTN 233 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + +I IIY DL +L L RGV +LLVE G F+ S +D ILY + +IG Sbjct: 234 QTHIEIIYLKSCDLTTILHNLYKRGVGTLLVEAGPTTTSEFLQSNYIDEFILYYAPKLIG 293 Query: 322 EGGIPSP-----LEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 G + E F V + +V L K Sbjct: 294 GSGNYQFYQTNDVIEIPDANQFEIVHSELLNQNVKLTLRKK 334 >gi|288904903|ref|YP_003430125.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34] gi|288731629|emb|CBI13184.1| riboflavin-specific deaminase [Streptococcus gallolyticus UCN34] Length = 351 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 122/359 (33%), Positives = 180/359 (50%), Gaps = 21/359 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65 +M+ A+ ++ T TNP V +IVK+G VI RG G HAE A+ EA E Sbjct: 3 ENYMAQAIAEAKKGFRQTYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEAPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI Sbjct: 63 ELTNSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +++E+E + Y KR ++ LK AVS D I + +T + VH Sbjct: 123 VVTQVLENEARALNPHYNFYHEHKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETNRFVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K Sbjct: 182 DERDDYQAILVGADTVLIDNPQLL--GAGTTLYPPVRVILDEIGRIFDKRELQIFKNQS- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 APV I + + +I +I + +L L + + S+ VEGGA V +F Sbjct: 239 APVYIFSR-----RQVTNLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 294 LASDLWDELISYMTPKVIGGNGRAAIASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|319892826|ref|YP_004149701.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Staphylococcus pseudintermedius HKU10-03] gi|317162522|gb|ADV06065.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5- phosphoribosylamino)uracil reductase [Staphylococcus pseudintermedius HKU10-03] gi|323464142|gb|ADX76295.1| riboflavin specific deaminase [Staphylococcus pseudintermedius ED99] Length = 348 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 116/355 (32%), Positives = 173/355 (48%), Gaps = 15/355 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE-A 67 ++ A++ + G T TNP+V +IVK G +IG G G HAE+QA++ AG + Sbjct: 3 HYLDYAIQLAEMTQGQTGTNPAVGAVIVKHGRIIGFGAHLKKGERHAEIQAIDMAGAKHV 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +GAT YV+LEPCSHYG +PPCAQ II+ GI +VV D + + Q GI V+ Sbjct: 63 KGATIYVSLEPCSHYGSTPPCAQRIIDTGIAKVVYAA--KDTTLQETSHDVMVQHGIEVE 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + A+ + +T+K++ S D S IT K V LR Sbjct: 121 YRPHPRAEQLYAAFYRSKEGAVPIVTVKVSASIDGKQATDHFESQWITSKQVKADVFQLR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DAI+ G GT+ D+P LT R+ H P ++IL K++ D+++ + + P+ I Sbjct: 181 HSHDAIITGNGTLTHDNPSLTTRVE--DGHHPAKVILSRSGKINWDAQLFQD-HVTPIYI 237 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 TEN AL ++ II ++ +L L +G +LVE G V F+ SRL Sbjct: 238 YTENQ----ALTSSFDHVEIIQQTDIQIEDVLKDLYQKGYGHVLVEAGPNVTSQFLASRL 293 Query: 308 VDSIILYRSQIVIGEGGI----PSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGK 357 V ILY + +IG G+ +PL + F V+ D +D+ L K Sbjct: 294 VTHFILYLAPKIIGGQGVNQFYQTPLVTPLNQLPQFEIVQTDIIDTDLKLRMQRK 348 >gi|315093789|gb|EFT65765.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL060PA1] Length = 331 Score = 289 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 171/355 (48%), Gaps = 35/355 (9%) Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D R+ M AL + NP V C+IV + VIG+G G PHAEV+AL + Sbjct: 1 MDQRWDDAMVLALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ SG QWL Sbjct: 60 AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTH 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V ++ E + Q+ +R + K A S D S ITG +++ Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV L RA+ AI+VG GT LAD+P LT RL G+ P+R+++ Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVRLPGVT-RQPLRVVVGMR-------------- 223 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +P R + + ++ D ++L +L RGV + +EGG +A + Sbjct: 224 -----------EPPAECHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 F+ + L+D +I + + V+G G + + +F+ G D+ + Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|326800779|ref|YP_004318598.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21] gi|326551543|gb|ADZ79928.1| riboflavin biosynthesis protein RibD [Sphingobacterium sp. 21] Length = 348 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 106/358 (29%), Positives = 164/358 (45%), Gaps = 22/358 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE------ 61 +M L + G S NP V L+V +IG G G HAE A+ Sbjct: 5 EIYMRRCLELAELGQGSVSPNPIVGALVVHHDTIIGEGWHRKYGEAHAEPNAIADVFNRY 64 Query: 62 -EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A + R +T YVTLEPCSH+G++PPCA +I+ +++VVV +DP +V+GRG+ L Sbjct: 65 PNAADLLRESTVYVTLEPCSHHGKTPPCADLLIKHQVKQVVVACNDPFEQVNGRGIAKLR 124 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +++ ++E E K + TR +R ++ LK A + + G ITG + Sbjct: 125 EAGIDVLEGVLEEEAKFVNRRFFTRVQHQRPYVILKWAETANGYFAPKGEKQQWITGSAA 184 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H R++ DA+LVG T L D+P+LT R +P RI++D L + Sbjct: 185 QVVNHRWRSEEDAVLVGANTALIDNPQLTVR--HWFGRNPKRIVIDKELSLPPHLHLFD- 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 A I+ + R K I + D + +L L V SL+VEGG Sbjct: 242 -KEAETIVFNAKKND---WQDRLKLIALENFDWYLPQNILYQLHLMDVQSLIVEGGIKTL 297 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + FI + L D + R Q + G+ +P + ++ G+D Y K Sbjct: 298 NLFIKAGLWDEARVLRGQAY-WKDGLEAP------RLQVIPQIKENIGNDSLTVYFNK 348 >gi|314924237|gb|EFS88068.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL001PA1] gi|314964911|gb|EFT09010.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL082PA2] gi|315103908|gb|EFT75884.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA2] gi|327325608|gb|EGE67407.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL103PA1] Length = 331 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 171/355 (48%), Gaps = 35/355 (9%) Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D R+ M AL + NP V C+IV + VIG+G G PHAEV+AL + Sbjct: 1 MDQRWDDAMVLALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQ 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG++A+GATA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ SG QWL Sbjct: 60 AGDDAKGATAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTH 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V ++ E + Q+ +R + K A S D S ITG +++ Sbjct: 119 GVEVVTGVLSEEATALNADWTFSQIHRRPWVCWKYAASLDGRSAAPDGTSQWITGEQARH 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV L RA+ AI+VG GT LAD+P LT RL G+ P+R+++ Sbjct: 179 QVQLGRARCGAIIVGTGTALADNPRLTVRLPGVT-RQPLRVVVGMR-------------- 223 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 +P R + + ++ D ++L +L RGV + +EGG +A + Sbjct: 224 -----------EPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGA 272 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 F+ + L+D +I + + V+G G + + +F+ G D+ + Sbjct: 273 FLAANLIDEVIAHMAPTVLGGGRVAIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|260436195|ref|ZP_05790165.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109] gi|260414069|gb|EEX07365.1| riboflavin biosynthesis protein RibD [Synechococcus sp. WH 8109] Length = 354 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 180/356 (50%), Gaps = 13/356 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M AL + G TS NP V +++ + G ++G G A G HAEV AL +AG+ Sbjct: 3 ELWMRRALALAALAEGHTSPNPLVGAVVLDRQGRLVGEGFHARAGDAHAEVGALRQAGDA 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARG T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L + G+ + Sbjct: 63 ARGGTLVVTLEPCCHHGRTPPCSEAVLSAGIGRVVIALEDPDPRVDGGGIRQLREAGLEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++ E + A+L R R LK A+S D + S I+G +++ VH Sbjct: 123 ISGVLREEARQQNRAFLHRVRTGRPFGVLKWAMSLDGRTALPNGVSQWISGPSARDWVHR 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LR+ DA++VG GTV DDP LT R G + P+R++L L +++ TA LAP Sbjct: 183 LRSGMDAVVVGGGTVRGDDPLLTSR--GRRSPEPLRVVLSRSLDLPNQAQLWDTA-LAPT 239 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 ++ D + L + + + C+ ++L+ L RG +L E G +A + I Sbjct: 240 LVAHGPDADLRRLPSGPEELGLSACE---PQQLMEALAKRGCNQVLWECGPELAAAAIRQ 296 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLEYIG 356 V I + ++G +PL + ++ + G+D L + Sbjct: 297 GCVQEIAAVVAPKLMGGMAARTPLGDLNFRAMDQVLQGQWHHSEPMGNDWLLRWRS 352 >gi|320335323|ref|YP_004172034.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM 21211] gi|319756612|gb|ADV68369.1| riboflavin biosynthesis protein RibD [Deinococcus maricopensis DSM 21211] Length = 353 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 119/346 (34%), Positives = 172/346 (49%), Gaps = 10/346 (2%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM AL+ + +G T+ NP V C+IV G V+GRG G HAEV AL++AG AR Sbjct: 2 HFMHQALQQAALGLGRTAPNPPVGCVIVAGGEVVGRGFHPRAGQGHAEVFALQDAGVRAR 61 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 GATAYVTLEPCSH GR+PPCA +I G+ RVVV DP+ V+GRG+ L G+ V Sbjct: 62 GATAYVTLEPCSHTGRTPPCADALIRAGVARVVVAALDPNPVVAGRGVARLRTHGLDVHV 121 Query: 129 MM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + R + K A + D I +P++G ++ VH R Sbjct: 122 GPLADAAVRQQAGFRSLITRGRPWVVYKYAATLDGKISADDARPLPVSGPDARALVHTWR 181 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DAI VG+GTVLADDP LT R P I+ D H + ++ ++ ++ Sbjct: 182 NEFDAIAVGVGTVLADDPHLTTR-GVPGGRDPRPIVFDRHARTPTTARALRPG----TVL 236 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 VT D A +++ L + L L GVTSLL+EGGA +A + + L Sbjct: 237 VTGPDA--RTDAHEAAGAHVLRAPT--LHEALQGLGALGVTSLLLEGGARLASALYAADL 292 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +D + + + ++G G + + V+ G+DV +E Sbjct: 293 IDEVRAFIAPTLLGAGLPALTSPAAHAPRALHDVQATRVGTDVLIE 338 >gi|220918025|ref|YP_002493329.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans 2CP-1] gi|219955879|gb|ACL66263.1| riboflavin biosynthesis protein RibD [Anaeromyxobacter dehalogenans 2CP-1] Length = 392 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 124/355 (34%), Positives = 180/355 (50%), Gaps = 7/355 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 RFM A+R + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG A Sbjct: 26 ERFMRLAVREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALA 85 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V Sbjct: 86 RGADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRHGVAVV 145 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ + T E R +TLK AV+ D I + ++G ++ VH L Sbjct: 146 KGVLRDACDRLNAPWFTFITEGRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRL 205 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R + DA+LVG GT ADDP LT RL P+R++LD L + + AP + Sbjct: 206 RDRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTL 264 Query: 247 IVTENDDPVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + P + + DL+ LL L RGV LLVEGGA V F+ + Sbjct: 265 VAHASAAPARRYGPGVELVRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFLEA 324 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356 LVD + ++ + + G G+P G V + G D+ + + Sbjct: 325 GLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLEQVAFERVGDDLLVTGVP 379 >gi|146276894|ref|YP_001167053.1| riboflavin biosynthesis protein RibD [Rhodobacter sphaeroides ATCC 17025] gi|145555135|gb|ABP69748.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodobacter sphaeroides ATCC 17025] Length = 356 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 191/356 (53%), Gaps = 11/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR +G T NP+V C+IVK G V+GRG T GG PHAE AL EAG A GA Sbjct: 1 MAHALRLGARGLGRTWPNPAVGCVIVKAGRVVGRGWTRPGGRPHAEPVALAEAGAAALGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+GR+PPCA+ + G+ RVV DPD RV+GRG L GI + + + Sbjct: 61 TAYVTLEPCAHHGRTPPCAEALAAAGVARVVTATGDPDPRVAGRGHALLHAAGIAVTEGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E + +L R +TLK+A S D I A S ITG ++ VH +R + Sbjct: 121 LEAEARAANAGFLKRVTLGLPFVTLKLAASVDGRIATASGESRWITGAHARRAVHAMRMR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA++VG+GT LADDP+L+ R G H P+RI++D + S DS++ +TA PV + Sbjct: 181 HDAVMVGVGTALADDPDLSVRDLGA-AHQPVRIVVDSLLRHSCDSRLGRTARHVPVWLCH 239 Query: 250 ENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 D P A A + ++ D D ++ L G+T + EGGA + + + Sbjct: 240 GPDAPEAARAGWRAAGALLLECEAGPDGLDPAAVMRRLASEGLTRIFCEGGARLGAALVR 299 Query: 305 SRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + L D ++ + + +IGE G P L + F + G D+ + Sbjct: 300 AGLCDELVSFTAGKLIGEEGRGAMGPLRLAQLAAAPAFRLASVETVGVDLLARWRP 355 >gi|56696631|ref|YP_166992.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3] gi|56678368|gb|AAV95034.1| riboflavin biosynthesis protein RibD [Ruegeria pomeroyi DSS-3] Length = 364 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 201/365 (55%), Gaps = 11/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S DAR+M+ AL R G+ NP+V C+IV +G ++GRG T GG PHAEV AL + Sbjct: 1 MSMSDARYMALALSLGRRGQGVCWPNPAVGCVIVNEGRIVGRGWTQPGGRPHAEVVALAQ 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I G+ RVV ++D D RV+G G + L + Sbjct: 61 AGGAARGATAYVTLEPCAHHGKTPPCAEALIAAGVARVVAAIEDCDPRVAGNGFEMLRRA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + + E L + + R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVSVGIGEDAAARDLAGFFLKTELGRPWVTLKLASSFDGRIATASGESQWITGPEARR 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ DA+LVG GT +DDP LT R G+ + P+R+++ + L L S++ +TA Sbjct: 181 AVHAMRARHDAVLVGAGTARSDDPSLTVRDMGVAQ-QPVRVVVSRYLDLPLMSQLARTAR 239 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 PV + D A+ +I C LL L G+G+T + EGGA Sbjct: 240 QVPVWLCHGPGVDGDRVRAWEGTGARLIPCAVEAGQISATDLLRQLGGQGLTRVFCEGGA 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 ++A S + + +VD ++ + + + IG G+P+ LE+ F + G+D+ Sbjct: 300 SLAASLLAADMVDELVGFTAGLAIGAEGLPAVGVLGLEQLSEAARFDLIETRAIGADILH 359 Query: 353 EYIGK 357 + + Sbjct: 360 RWQRQ 364 >gi|320011955|gb|ADW06805.1| riboflavin biosynthesis protein RibD [Streptomyces flavogriseus ATCC 33331] Length = 366 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 180/360 (50%), Gaps = 12/360 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA 63 + + M A+ + +G TS NP V C+I+ G G G G PHAEV AL A Sbjct: 4 AAETAAMRRAITLAARGLGATSPNPVVGCVILDAAGDPAGEGFHQRAGGPHAEVHALRAA 63 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARG TA VTLEPC+H GR+ PCAQ +IE G+RRVV V DP+ + G L G Sbjct: 64 GERARGGTAIVTLEPCNHTGRTGPCAQALIEAGVRRVVYAVSDPNP-QATGGADTLRGAG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++ E + A+LT R ++ K A + D I A S IT ++ Sbjct: 123 LEVAQGLLADEAEAGNTAWLTSVRLGRPYVLWKYAATLDGRIAAADATSRWITSPEARAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 VH LRA++DA++VG GT ADDP+L R P+R+++D + ++++ + Sbjct: 183 VHRLRAEADAVVVGSGTARADDPQLGVR-GIEGAVQPLRVVVDTGATAVRPGARVLDGSA 241 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + V + + + L + D+ LL L RGV S+L+EGG +A S Sbjct: 242 PSLVAVADDAEAGHLPEEAVLRLPRAATGPGLDIDALLAALHARGVRSVLLEGGPVLAGS 301 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 F+ + VD+++ Y + +++G G P+ L + + +R D G D+ + + Sbjct: 302 FVAAGAVDTVVGYLAPVLLGAG--PAALADAGISTISQALRLDVTETVRIGPDLRITAVP 359 >gi|326440097|ref|ZP_08214831.1| putative riboflavin/cytosine deaminase [Streptomyces clavuligerus ATCC 27064] Length = 388 Score = 288 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 110/315 (34%), Positives = 157/315 (49%), Gaps = 7/315 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G + G G G PHAEV AL Sbjct: 3 TAADIAAMRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + G L Sbjct: 63 AGTRARGGTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R + K A + D I S IT ++ Sbjct: 122 GVRVECGLLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA +DA+++G GT+ DDP+L R P+R++LD ++ ++++ A Sbjct: 182 DVHRLRAGADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA- 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVA 299 +I V E D + R DL LL L RGV S+L+EGG +A Sbjct: 240 APTLIAVGEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLA 299 Query: 300 HSFINSRLVDSIILY 314 +F+ +R VD +I Y Sbjct: 300 GAFVAARAVDKVIGY 314 >gi|256421260|ref|YP_003121913.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM 2588] gi|256036168|gb|ACU59712.1| riboflavin biosynthesis protein RibD [Chitinophaga pinensis DSM 2588] Length = 352 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 165/352 (46%), Gaps = 23/352 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 SSFD +M L+ ++ G + NP V ++V +G +IG G G HAEV + Sbjct: 3 SSFDEFYMQRCLQLAKLGAGNVAPNPMVGAVLVYEGRIIGEGYHRQYGFAHAEVNCVHSV 62 Query: 64 GEEAR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E + AT YV+LEPC+HYG++PPCA+ I+ I VV+ D +V+G+G+ L Sbjct: 63 KPEDQHLIPAATMYVSLEPCAHYGKTPPCAELIVSQQISTVVIGCVDTFSQVAGKGIGIL 122 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++E+ + + T +KR +I LK A + D + A V I+ + Sbjct: 123 KAAGITVRTGVLEAAARELNSRFFTFHEQKRPYIILKWAQNADGFMAGADGRPVRISNPL 182 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + VH R++ ILVG T +AD+P L RL P+RI++D K + + Sbjct: 183 TDRLVHRWRSEEMGILVGTNTAVADNPRLNNRL--WTGKDPVRIVIDRTLKTPREYHLWH 240 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 A + I E + + + L +L+ IL R + S+LVEGGA V Sbjct: 241 GP--ATLFITAEQAEKQDTAEMVTADFSQPL-----LPQLMKILHDRRILSVLVEGGAHV 293 Query: 299 AHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYF 346 + L D ++++IG+ G+ +P+ L K + D Sbjct: 294 LREMTEAGLWDE-----ARVIIGDNPFALGVKAPVLPHALLKETQILESDQI 340 >gi|332291081|ref|YP_004429690.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus 4H-3-7-5] gi|332169167|gb|AEE18422.1| riboflavin biosynthesis protein RibD [Krokinobacter diaphorus 4H-3-7-5] Length = 333 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 39/353 (11%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG----E 65 +++ + ++ + + NPSV ++V + +I G T+ G PHAEV + A E Sbjct: 7 YINRCIALAKNGLPVAMPNPSVGAVLVHNNKIIAEGYTSDYGGPHAEVNCIAFAKANTPE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YV+LEPCSH+G++PPCA ++ GI++VV+ DP +V+G G++ L Q G+ Sbjct: 67 LIAKSTLYVSLEPCSHWGKTPPCADLVVASGIKKVVIGTIDPFAKVAGAGIKRLIQAGVD 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181 + + E E + + T +KR ++ LK A + D I + IT S+ Sbjct: 127 VTVGVQEKECQEINKRFFTYHEKKRPYVILKWAETADGFIAPKTRDAQQPVWITNPYSRQ 186 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH R++ AILVG TVL D+P LT R + +P+R+++D L + + Sbjct: 187 LVHKWRSEEMAILVGGKTVLEDNPSLTTR--DWEGKNPIRVVIDTKGNLDNNLTVFNQEA 244 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 VI T++ + + L +G+ S+++EGGA Sbjct: 245 ETLVIASTDS------------------------QLISETLYDKGIQSVIIEGGAQTLQH 280 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 FI++ L D +++ G +P L ++F+ + D D Y Sbjct: 281 FIDANLWDEARIFKGNTSF-SKGTKAP----QLSQHFLLEKTDTILDDTLHYY 328 >gi|304320114|ref|YP_003853757.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Parvularcula bermudensis HTCC2503] gi|303299017|gb|ADM08616.1| diaminohydroxyphosphoriboxylaminopyrimidine deaminase +5-amino-6-(5-phosphoribosylamino)uracil reductase (RibD) [Parvularcula bermudensis HTCC2503] Length = 366 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 174/367 (47%), Gaps = 15/367 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A G T+ NP V C++VK G ++G G G HAE+ AL+ Sbjct: 1 MTLTDDICMDRAAALGELGAGFTAPNPMVGCVLVKGGQIVGEGYHPRPGADHAEIAALKA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG EARGA AYVTLEPC+HYG +PPC + +IE G+ VV V DP+ ++ G + L Sbjct: 61 AGAEARGAVAYVTLEPCNHYGATPPCTKALIEAGVAEVVYAVADPNP-LASGGRETLQAA 119 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 GI V A+ R + K A + D + G S ITG ++ + Sbjct: 120 GIAVRAHPTLAASRLTDAWRFSLTADRPWVAAKFAATLDGRVATRGGDSQWITGPAARAR 179 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H LR +S AI+VG+GTVLAD+P L R G +++I D + + + + Sbjct: 180 SHDLRQRSGAIVVGVGTVLADNPALNPRPEGRAAAETLKVIFDSQARTPPHAACLSSP-- 237 Query: 243 APVIIVTENDDPVLAL-AFRKKNINIIYCDCRD----LKKLLTIL-VGRGVTSLLVEGGA 296 PV+++T D P A A ++ +II + L+ L L G S++VEGG Sbjct: 238 GPVLLITAEDAPGAAKSALKESGAHIISVQRENEGLCLRSALHCLRADFGCLSIMVEGGG 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + SF ++ L+D + + + ++G G + + +DV +E G Sbjct: 298 RLLGSFADAGLIDEVWAFLAPKILGGG------QCAVDGHGPSRIGEAMALTDVSIEMAG 351 Query: 357 KNLCLQE 363 + ++ Sbjct: 352 PDFLIRG 358 >gi|182415465|ref|YP_001820531.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1] gi|177842679|gb|ACB76931.1| riboflavin biosynthesis protein RibD [Opitutus terrae PB90-1] Length = 389 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 159/367 (43%), Gaps = 15/367 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 ++ FM AL +R G T NP V LIV++G V+ G A G PHAE AL Sbjct: 4 TTTNNHETFMRRALEVARKGWGDTHPNPMVGALIVEEGRVVAEGFHAQDGGPHAERLALL 63 Query: 62 EAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G+ R GAT YVTLEPCS GR+ C II GI++VVV DP+ SG+G + L Sbjct: 64 NRGKPPRAGATMYVTLEPCSTSGRTGACTDAIISSGIKQVVVGATDPNPEHSGKGFEVLR 123 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ ++ ++E E + I K AV+ D + S ITG + Sbjct: 124 AAGVEVIHGVLERECTDLNLIFNHWIHRATPLIASKSAVTLDGRMACRTGESKWITGEPA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK- 238 + VH+ R AI VG GTV D+P LT R+ G E P+R + D + +D ++ K Sbjct: 184 RANVHVWRRLFPAIAVGAGTVFKDNPRLTARVEGQPEWCPIRFVFDGLLRTVVDKQLPKL 243 Query: 239 --TALLAPVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLL----TILVGRGVTSLL 291 + ++VT + R+ + + + + V V +L Sbjct: 244 YTDEFHSRTVVVTTPHGGLGYVRKLREMGVQVWVIPSPTQRVPMSEFRKKCVEERVAGVL 303 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYF 346 EGGA + + + +D + +YR+ ++ + EK VR + Sbjct: 304 FEGGAQLVSHLLQEKQLDYLFIYRAPVLFADDRAKPMFNGLRTEKPVNGVRLSDVRNEVH 363 Query: 347 GSDVCLE 353 G D Sbjct: 364 GDDTLTR 370 >gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rubrivivax benzoatilyticus JA2] gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rubrivivax benzoatilyticus JA2] Length = 370 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 118/370 (31%), Positives = 174/370 (47%), Gaps = 17/370 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 MP++ D + AL + +GLT NP V C+I D G V+GRG T G HAEV A Sbjct: 1 MPLAPLDRTRLLEALALAEGSIGLTDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMA 60 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 L +A G + RGATA+VTLEPC+H+GR+PPC ++ GI RVVV V DP +V+G G+ Sbjct: 61 LRDAAAAGHDTRGATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGI 120 Query: 117 QWLSQKGIIVDRMME---SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 L G+ V+ E + + + +R R + +KIA S D + S Sbjct: 121 TRLRAAGVQVELGDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQW 180 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 ITG ++ H R ++ +L GIGTVL DDP L R PMR ++D +L Sbjct: 181 ITGEAARTDGHAWRRRAGCVLTGIGTVLDDDPRLDVRRV-PTVLQPMRAVMDSGLRLPAG 239 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTS 289 ++++ A ++ A A + D +L L GV Sbjct: 240 ARVL--APPGRCLVFHAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNE 297 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYF 346 L VE GA + + + + LVD +++Y + +++GEG P E + V Sbjct: 298 LHVEAGARLNGALLAAGLVDELLVYTAPLLLGEGRPMAALGPFETLAQGHRYGFVDATPV 357 Query: 347 GSDVCLEYIG 356 G D+ L Sbjct: 358 GEDLRLRLRR 367 >gi|256851712|ref|ZP_05557100.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 27-2-CHN] gi|260661570|ref|ZP_05862482.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 115-3-CHN] gi|256615670|gb|EEU20859.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 27-2-CHN] gi|260547627|gb|EEX23605.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 115-3-CHN] Length = 352 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 168/354 (47%), Gaps = 13/354 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + D +FM+ A+ + T TNP V ++VKDG V+ G G HAE A+ + Sbjct: 1 MMNKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISK 60 Query: 63 AG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 61 LTPEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRS 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 I + ++ E K Y K +I LK A+S D+ ITG + Sbjct: 121 HNISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQ-ITGKAAY 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 QVH RA AI++G T L D+P L + Q+H P+RI+LD +L + + + Sbjct: 180 EQVHRERADYQAIMIGSSTALIDNPTLLT--SVKQDHPPIRIVLDRRGRLLNKNLALFSD 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 A + T+N L +I + L+++L +L V S+ VEGG + Sbjct: 238 KHAQTWLFTQNT--KLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMK 295 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 +FI +L +I Y S +G L+ + +N ++ DY D+ + Sbjct: 296 TFIEEKLAQELITYFSPTFLGNNA----LDGFEITENINLIKPDYQVLDKDIRI 345 >gi|303245768|ref|ZP_07332051.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans JJ] gi|302493031|gb|EFL52896.1| riboflavin biosynthesis protein RibD [Desulfovibrio fructosovorans JJ] Length = 380 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 169/375 (45%), Gaps = 21/375 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ DA FM+ AL + G NP V ++V+DG ++ G G PHAEV+ L + Sbjct: 1 MAPVDADFMARALELAERGRGFVMPNPRVGAVLVRDGGIVAEGWHKVFGGPHAEVECLHD 60 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G G T YVTLEPC+H+G++PPC++ +++ GI RVVV DP+ G Sbjct: 61 AERKGVSPAGGTMYVTLEPCNHFGKTPPCSRTLLDAGIARVVVGCLDPNPVAGGGAALLR 120 Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + + ++ES+ + + ++T Q R ++T+K+A++ D I + ++ S Sbjct: 121 QEGVEVTVGVLESQCREAVADFITWQTMGRPYVTVKLAMTLDGRIATRTGDAAWVSCEAS 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG----LQEHSPMRIILDPHF-KLSLDS 234 + +VH +RA S A+LVG GT+ AD+P L+ RL P+ +++ Sbjct: 181 RERVHAMRAASSAVLVGGGTLRADNPRLSHRLPENHPLAHNPQPLGVVVTRRLPDADAQL 240 Query: 235 KIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYCD------CRDLKKLLTILVGR-G 286 ++K VI+ A K + + DL L L Sbjct: 241 ALLKDRPTRLVILTDAKAAASPVATQLEKAGVRVWGLPRAANGEGLDLAAGLARLRQEAR 300 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCV 341 V +LL EGG +A S + L D ++++ + V+G+ + + Sbjct: 301 VFALLCEGGGELAASLLGQGLADELVIFYAPKVLGDAAAVPGFSGLTVPRMADAAQLRFT 360 Query: 342 RRDYFGSDVCLEYIG 356 + G+DV + Sbjct: 361 SMESVGTDVMVRLRP 375 >gi|83951487|ref|ZP_00960219.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM] gi|83836493|gb|EAP75790.1| riboflavin biosynthesis protein RibD [Roseovarius nubinhibens ISM] Length = 364 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 139/364 (38%), Positives = 201/364 (55%), Gaps = 11/364 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +S D M ALR R +G NP+V C+IV ++GRG TA GG PHAE QAL E Sbjct: 1 MSEQDIHHMREALRLGRSAMGSAWPNPAVGCVIVAGDQIVGRGATAPGGRPHAEPQALAE 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARGATAYVTLEPC+H+G++PPCA+ +I+ G+ RVVV V D D RVSGRG++ L + Sbjct: 61 AGAAARGATAYVTLEPCAHHGKTPPCAEVLIKAGVARVVVAVGDSDPRVSGRGIEMLRKA 120 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++E E + L + R E R +TLK+A S D I A S ITG ++ Sbjct: 121 GIEVVQGVLEDEARTDLAGFFLRIEEGRPWVTLKLASSFDGRIATASGHSQWITGPEARQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +VH RA+ DA++VG GT AD+P LT R + +R+++ + L S++ +TA Sbjct: 181 RVHEFRARHDAVMVGAGTARADNPMLTVRGLDVPRQP-VRVVVSRRLDVPLMSELARTAG 239 Query: 242 LAPVIIVTEND-DPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGA 296 PV + D D L A++ ++ C ++ +L L RG+T + EGG Sbjct: 240 EVPVWMCHGPDADKSLREAWQGLGAELVECRLHGRQLEIGSVLQALGERGLTRVFCEGGG 299 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCL 352 A+A S +++ LVD +I + + +VIG G+P L F + G D+ Sbjct: 300 ALAASLLSAGLVDELIGFTAGVVIGAEGLPGVGAMGLARLEEAPRFRLIEAAAVGGDIMH 359 Query: 353 EYIG 356 + Sbjct: 360 RWHR 363 >gi|332676151|gb|AEE72967.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes 266] Length = 323 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 110/347 (31%), Positives = 168/347 (48%), Gaps = 32/347 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ AL + NP V C+IV + VIG+G G PHAEV+AL +AG++ RGA Sbjct: 1 MALALDMAAKS-PCPDPNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGA 59 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TA VTLEPC H GR+ PC+ +++ GI RVV+ DP+ SG QWL G+ +V + Sbjct: 60 TAVVTLEPCHHTGRTGPCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGV 118 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + Q+ +R + K A S D S ITG +++QV L RA+ Sbjct: 119 LSEEATALNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRAR 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG GT LAD+P LT RL G+ H P+R+++ Sbjct: 179 CGAIIVGTGTALADNPRLTVRLPGVT-HQPLRVVVGMR---------------------- 215 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 +P R + + ++ D ++L +L RGV + +EGG +A +F+ + LVD Sbjct: 216 ---EPPAGCHLRDDSASTLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVD 272 Query: 310 SIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 +I + + V+G G + +F+ G D+ + Sbjct: 273 EVIAHMAPTVLGGGRAAVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 319 >gi|114777001|ref|ZP_01452021.1| RibD [Mariprofundus ferrooxydans PV-1] gi|114552522|gb|EAU54982.1| RibD [Mariprofundus ferrooxydans PV-1] Length = 379 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 106/358 (29%), Positives = 165/358 (46%), Gaps = 13/358 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + + M A+ ++ G T NP V ++V G V+G G G PHAE AL+ Sbjct: 21 MPTQHEALMLQAIELAQRGGGTTHPNPRVGAVVVNRGEVVGVGWHKRAGGPHAEAVALQV 80 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARG T YVTLEPCS +GR+P C + I GI+ VV DP+ ++SG G + L Sbjct: 81 AGKRARGGTLYVTLEPCSAHGRTPACTEAIRRAGIKHVVYASPDPNPQMSG-GHKILEAA 139 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ + + + R ++ K A+S D + S I+G S+ Sbjct: 140 GISVTAGVLREQAEALNIPFFHYLRTGRPYVIAKAAISLDGKMATRTHHSQWISGEASRL 199 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD-PHFKLSLDSKIIKTA 240 LRA SDAI+VG GT+ D+P LT R P+R+++ K D K++ Sbjct: 200 HAQGLRAASDAIIVGAGTLKHDNPSLTVRGVPAVGDVPLRVVMCFETPKFFADCKLLSAE 259 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + + N +R+ I + L +L L G LL+EGG + Sbjct: 260 APTRFYVRSINTHTE---QWREAGIEVEQVTS--LAGVLKHLAEDGRLMLLLEGGGELHA 314 Query: 301 SFINSRLVDSIILYRSQIVIGE-GGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 SF+ +R D ++LY++ I+IG IP ++ + + R G D + Sbjct: 315 SFLEARFTDELVLYQAPILIGGRDAIPLWSGQGVDSVDHAPHLEQIERRILGVDQMIR 372 >gi|291518541|emb|CBK73762.1| riboflavin biosynthesis protein RibD [Butyrivibrio fibrisolvens 16/4] Length = 257 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 96/254 (37%), Positives = 139/254 (54%), Gaps = 5/254 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 D +M AL ++ G + NP V +IVKDG++IG G G HAE AL++ Sbjct: 3 DKTYMLRALELAKLGAGFVNPNPMVGAVIVKDGVIIGEGYHEKYGQLHAERNALKDCRER 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GAT YVTLEPC HYG++PPC + I+E I RVV+ D + V+G+G L + G Sbjct: 63 GNDPAGATMYVTLEPCCHYGKTPPCTEAIVESRINRVVIGTLDVNPVVAGKGADILREHG 122 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++E E K + + KR ++ +K A++ D I S IT ++ Sbjct: 123 IRVEVGLLEKECKKLNRVFNKYMLSKRPYVVMKYAMTADGKIATVTGESKWITSDEAREN 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LR I+VG+ TV+ D+P L CRL+ +P+RII D H + LDSK+++TA Sbjct: 183 VHRLRKNLSGIMVGVTTVITDNPSLDCRLDE-PAVNPVRIICDSHLRTPLDSKVVETAGG 241 Query: 243 APVIIVTENDDPVL 256 II T +DD Sbjct: 242 IKTIIATSSDDEKK 255 >gi|297567806|ref|YP_003686777.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946] gi|296852255|gb|ADH65269.1| hypothetical protein Mesil_3462 [Meiothermus silvanus DSM 9946] Length = 383 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 190/374 (50%), Gaps = 35/374 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM AL + +G TS NP V C++V+ V+GRG G PHAEV AL +AGE Sbjct: 6 DVAFMRQALELAAQGIGRTSPNPPVGCVLVRGAEVVGRGFHPRAGEPHAEVLALRQAGER 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GATAY+TLEPC+HYGR+PPCAQ +IE G+ RVVV DP+ +VSGRGL+ L++ G+ + Sbjct: 66 AQGATAYITLEPCAHYGRTPPCAQALIEAGVARVVVATTDPNPQVSGRGLEQLARAGVAV 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E + + + + K A+S D + ++G ++ +V L Sbjct: 126 TTGLLRDEAERQQEVFRHWIAHREPFVVFKTALSLDGKTATVAGDARWVSGEAARERVQL 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL-----NGLQEHSPMRIILDPHFKLSLDSKII--- 237 LR + DA++VG+GTVL DDP LTCRL P++++ D H + +++ Sbjct: 186 LRDELDAVVVGVGTVLTDDPWLTCRLREPAVPHRVPRDPVKVVFDTHARTPPRARLFAPG 245 Query: 238 -KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGR------ 285 + ++++ E DP R+ ++ + L+ L L R Sbjct: 246 PRGEAARVLLLIAEGADPARVEELRQAGAEVVRLEAGPDGRPRLEAALQALEARGLTGLL 305 Query: 286 -GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFM 339 S+ +A SF ++ V ++ + + ++G G P+PL + ++ Sbjct: 306 LEGGSV-------LAGSFFDAGKVHKVVAFVAPKLVGGRG-PTPLAGNGVARMSQARHLE 357 Query: 340 CVRRDYFGSDVCLE 353 VR + G+DV +E Sbjct: 358 RVRVEPLGTDVLVE 371 >gi|163847753|ref|YP_001635797.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus J-10-fl] gi|222525619|ref|YP_002570090.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl] gi|163669042|gb|ABY35408.1| riboflavin biosynthesis protein RibD [Chloroflexus aurantiacus J-10-fl] gi|222449498|gb|ACM53764.1| riboflavin biosynthesis protein RibD [Chloroflexus sp. Y-400-fl] Length = 391 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 119/355 (33%), Positives = 170/355 (47%), Gaps = 14/355 (3%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 AL+ + VG TS NP V ++V+DG V+G G T G PHAE AL AGE ARGA Sbjct: 15 ELALQQAAAVVGRTSPNPPVGAVVVRDGQVVGLGATQPAGGPHAERIALAAAGERARGAD 74 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 Y TLEPC+ YGR+PPC + II GIRRV DPD R+ L GI V R+ Sbjct: 75 LYTTLEPCTFYGRTPPCTEAIIAAGIRRVFFIAHDPDPRMGDGAAAVLQPAGIEVYRITT 134 Query: 132 SEGK--IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 L + R R +T K A++ D I A S IT ++ QVH LR Q Sbjct: 135 GAATVAGQLAPFRCRVQCGRPLVTAKYAMTLDGRIATASGDSRWITDPAARAQVHRLRDQ 194 Query: 190 SDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 D I+VG+GT+ DDP+LT RL+ + P+R+I+D + L +++++ L +I Sbjct: 195 VDVIMVGVGTIRNDDPQLTTRLDQHWREPRHPLRVIVDSRGQTPLHARVVRGDLPGQTLI 254 Query: 248 VTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 +P A + + + ++ L LL L G LLVEGGA + + Sbjct: 255 ACVQPEPAWLAAMQSRGVRVVQFPPDATGRVALAPLLHYLAHEGYNHLLVEGGAMLLGAL 314 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 L+D I + V+ + P P+ + + + R + + D L Sbjct: 315 HAECLIDEIWAFIGARVVNDALAPGPMAGPGVACMAMARRYRLRRLEQYDQDALL 369 >gi|86357148|ref|YP_469040.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea minase protein [Rhizobium etli CFN 42] gi|86281250|gb|ABC90313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea minase protein [Rhizobium etli CFN 42] Length = 435 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 145/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV C+IVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCVIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I CG+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGDLARGATAYVTLEPCSHHGKTPPCAEALIACGVARVVISVTDPDPRVSGRGISMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI + ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIAVDAGVLEAEGRRSLAAYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQTLRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPLLSLPLTSKLVAT 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 ARDVPVILVASEE 253 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 60/111 (54%) Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 V D +A + I+YC+ + LL L RG++SLL+EGGA A F+ + L Sbjct: 325 VDATDADARRVALEAAGVEIVYCNPYHPEVLLPALATRGISSLLIEGGAKTAKLFLEAGL 384 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +D I LY++ +VIGEGGI SP++ + F + FG D EY +N Sbjct: 385 LDRIQLYQAPVVIGEGGIESPVQATDIPSGFTHMGTQLFGVDRLDEYEREN 435 >gi|282933540|ref|ZP_06338910.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|297205330|ref|ZP_06922726.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii JV-V16] gi|281302283|gb|EFA94515.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii 208-1] gi|297149908|gb|EFH30205.1| riboflavin biosynthesis protein RibD [Lactobacillus jensenii JV-V16] Length = 351 Score = 286 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 167/352 (47%), Gaps = 13/352 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +FM+ A+ + T TNP V ++VKDG V+ G G HAE A+ + Sbjct: 2 NKDEQFMALAINSASKGRYHTWTNPMVGAVVVKDGKVLATGYHHKYGDVHAERDAISKLT 61 Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ +T YVTLEPC+H G+ PPC+ II I+RVV+ DP V+G+G++ L Sbjct: 62 PEQLFNSTLYVTLEPCNHTGKQPPCSDLIIASKIKRVVISEIDPHGLVTGKGIKKLRSHN 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ E K Y K +I LK A+S D+ ITG + Q Sbjct: 122 ISVTTGVLTQEAKKLNKHYNFFYEHKMPYICLKQALSLDHKCSYPDKRIQ-ITGKAAYEQ 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA AI++G T L D+P L + Q+H P+RI+LD +L + + + Sbjct: 181 VHRERADYQAIMIGSSTALIDNPTLLT--SVKQDHPPIRIVLDRRGRLLNKNLALFSDKH 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A + T+N L +I + L+++L +L V S+ VEGG + +F Sbjct: 239 AQTWLFTQNT--KLTKFPYPPHIKVFLLHSGSLREVLQLLTQNNVQSIYVEGGPTLMKTF 296 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 I +L +I Y S +G L+ + +N ++ DY D+ + Sbjct: 297 IEEKLAQELITYFSPTFLGNNA----LDGFEITENINLIKPDYQVLDKDIRI 344 >gi|254392899|ref|ZP_05008067.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus ATCC 27064] gi|197706554|gb|EDY52366.1| riboflavin biosynthesis protein RibD [Streptomyces clavuligerus ATCC 27064] Length = 379 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 154/308 (50%), Gaps = 7/308 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I G + G G G PHAEV AL AG ARG Sbjct: 1 MRRAIELAARGLGSTSPNPVVGCVITDASGEIAGTGYHERAGGPHAEVHALRAAGTRARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ + G L G+ + Sbjct: 61 GTAYVTLEPCDHTGRTGPCSQALLAAGITRVVHAVADPNP-QASGGAGTLRAAGVRVECG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+LT R + K A + D I S IT ++ VH LRA Sbjct: 120 LLGPEAEAVNAAWLTSVRLGRPQVVWKYAATLDGRIAAEDRSSRWITSPEARADVHRLRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +DA+++G GT+ DDP+L R P+R++LD ++ ++++ A +I V Sbjct: 180 GADAVVIGSGTLRTDDPQLAVR-GIEGAVQPLRVVLDSRATVTPAARVLDDA-APTLIAV 237 Query: 249 TENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 E D + R DL LL L RGV S+L+EGG +A +F+ +R Sbjct: 238 GEGADTGHLPGVDTVVLPAAPGPGRGLDLHALLAELSARGVRSVLLEGGPTLAGAFVAAR 297 Query: 307 LVDSIILY 314 VD +I Y Sbjct: 298 AVDKVIGY 305 >gi|34540017|ref|NP_904496.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83] gi|34396328|gb|AAQ65395.1| riboflavin biosynthesis protein RibD [Porphyromonas gingivalis W83] Length = 330 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 173/331 (52%), Gaps = 18/331 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ + Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L G+ Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDAGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179 + ++ E + +LT Q + R ++TLK A S D I A V ++ ++ Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH R DAILVG T L D+P LT R +P+R++ D H L + Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297 + P ++ TE + P + ++ + D ++++L L RG+ SLLVEGGA Sbjct: 242 S--VPTLVFTEKEQP----SGYPSAVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 + SFI+S L D + + S I++ G+ +P Sbjct: 296 ILRSFIDSGLYDDVRIEHSTIIL-NEGVRAP 325 >gi|94984408|ref|YP_603772.1| riboflavin biosynthesis protein RibD [Deinococcus geothermalis DSM 11300] gi|94554689|gb|ABF44603.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Deinococcus geothermalis DSM 11300] Length = 383 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 116/361 (32%), Positives = 177/361 (49%), Gaps = 12/361 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + DA M AL + + +G T+ NP V C+IV+ G V+GRG G PHAEV AL Sbjct: 21 PGEAADAALMDQALAQAAYGLGRTAPNPPVGCVIVRGGEVVGRGFHPRAGEPHAEVFALR 80 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE ARGATAYVTLEPCSH+GR+PPCA +I G+ RVVV DP+ +V+GRG++ L Sbjct: 81 EAGERARGATAYVTLEPCSHFGRTPPCADALIRAGVARVVVAALDPNPQVAGRGVERLRA 140 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + + E + + R + K A++ D + G G+ +T ++ Sbjct: 141 AGLHVTVGVGEEAALRQQAGFRSLVARGRPWVVYKYAMTLDGKVAAPGEGNGAVTSAPAR 200 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +V R + DA+ VG GT+LADDP LT R P ++ D + + ++ ++ Sbjct: 201 ARVMRWRNELDAVAVGSGTLLADDPALTTR-GVPGGRDPRPVLFDRRARTPVAARALRPG 259 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I+VT I+ D L + L L ++SLL+EGG +A Sbjct: 260 ----TIVVT--APETNTDHLEAAGAVILRADS--LPEALHGLGELNISSLLLEGGPRLAS 311 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +F L+D + + ++G G P P + + + G D+ + Sbjct: 312 AFFADGLIDEVRALIAPRLLGAGLPPLDGPARPLAQAQILRDPQGEPLGPDLLVTGRLNE 371 Query: 359 L 359 + Sbjct: 372 I 372 >gi|306833066|ref|ZP_07466197.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC 700338] gi|304424775|gb|EFM27910.1| riboflavin biosynthesis protein RibD [Streptococcus bovis ATCC 700338] Length = 351 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 179/359 (49%), Gaps = 21/359 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65 +M+ A+ ++ TNP V +IVK+G VI RG G HAE A+ E E Sbjct: 3 ENYMAQAIAAAKQGFRQIYTNPLVGAVIVKNGRVIARGAHLQYGHEHAEKNAILHCEVPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 E +T YVTLEPC H G+ PPC Q I+E GI++VVV DP+ V+G+GL++L +GI Sbjct: 63 ELANSTLYVTLEPCHHTGKQPPCTQAIVEAGIKKVVVGQLDPNPLVAGKGLEFLKSQGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V +++E+E + Y KR ++ LK AVS D I + +T + VH Sbjct: 123 VVTQVLENEARALNPHYNFYHEYKRPYVVLKQAVSLDGKIAVL-GKRTALTNDETNRFVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 R AILVG TVL D+P+L G + P+R+ILD ++ + +I K Sbjct: 182 DERDDYQAILVGADTVLIDNPQLL--GAGTSLYPPVRVILDETGRIFDKRELQIFKNQS- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 APV I + +A +I +I + +L L + + S+ VEGGA V +F Sbjct: 239 APVYIFSR-----RQVANLPAHITVIALSNFSIANILQALYEKKIQSVYVEGGAQVHDAF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + S L D +I Y + VIG G + +E+ + D ++ IG NL L Sbjct: 294 LASDLWDELISYVTPKVIGGNGRAAMASSRQVEQVYDL-------QDFSVQTIGTNLRL 345 >gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa] gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa] Length = 592 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 97/369 (26%), Positives = 172/369 (46%), Gaps = 19/369 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S DA ++ A + + G +S +P+ C+I GIV G G G AEV A+E A Sbjct: 33 SLDAAYIKRAAQIADNSAGFSSPHPNFGCVIATTSGIVAGEGYLYAQGTKAAEVLAVEAA 92 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ++G+TAY+ +EP +G +++ GI RVVV + P + G ++ L +G Sbjct: 93 GGFSKGSTAYLNMEPGDCHGDQ-SAVSALVQAGITRVVVGIRHPLQHLHGNAIRSLRGQG 151 Query: 124 IIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV 172 + VD + E + + R + LK A++ D I + Sbjct: 152 LQVDVVGEDLKSKIMEEARKSCLLVNAPLIHRATSQVPFSVLKYAMTLDGKIATTSGHAT 211 Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 I+ S+N+V LR +SDAI+VG TV D+P LT R G H+P+RI++ F L Sbjct: 212 WISSKKSRNRVFELRGRSDAIIVGGNTVRKDNPRLTARHGG--GHTPIRIVMTQTFNLPE 269 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 ++ + + ++ +++ K + ++ D + ++++ RG S+L Sbjct: 270 EANLWDISDVSTIVVTQRGARRSFQKLLASKGVEVVEFDILNPREVMEYFHDRGYLSILW 329 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 E G +A S I+S ++ + + + +IG PSP+ E + + + DVC Sbjct: 330 ECGGTLAASAISSGVIHKVFAFVAPKIIGGKNAPSPVGELGMVEMSQALDLI----DVCF 385 Query: 353 EYIGKNLCL 361 E +G ++ + Sbjct: 386 EQVGPDMLI 394 >gi|241204003|ref|YP_002975099.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857893|gb|ACS55560.1| riboflavin biosynthesis protein RibD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 438 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 148/253 (58%), Positives = 188/253 (74%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+AA+R SRWH+G T+TNPSV CLIV+ G+++GR VTA GG PHAE QAL Sbjct: 1 MRITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVRGGVIVGRAVTALGGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG ARGATAYVTLEPCSH+G++PPC+Q +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGALARGATAYVTLEPCSHHGKTPPCSQALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 EAGIEVDTGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGAGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + QV LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAQVQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPSLALPLTSKLVET 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 AREVPVIVVASEE 253 Score = 103 bits (258), Expect = 4e-20, Method: Composition-based stats. Identities = 39/101 (38%), Positives = 54/101 (53%) Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + +++C+ + LL L RG++SLLVEGGA A F+ + LVD I LY+ Sbjct: 336 RRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLEAGLVDRIQLYQ 395 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + +VIGEGGI SPL+ + F FG D EY Sbjct: 396 APVVIGEGGIESPLDATDIPSGFAHTGTLMFGGDRLDEYER 436 >gi|320546418|ref|ZP_08040733.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC 9812] gi|320448803|gb|EFW89531.1| riboflavin biosynthesis protein RibD [Streptococcus equinus ATCC 9812] Length = 351 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 174/361 (48%), Gaps = 21/361 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +M A+ ++ T TNP V +IVKD VI RG G HAE A+ Sbjct: 1 MDKNYMLQAIEEAKRGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 EE +T YVTLEPC H G+ PPC Q I+E GI++VV DP+ V+G+G+ +L ++G Sbjct: 61 PEELFNSTLYVTLEPCHHGGKQPPCTQAIVEVGIKKVVAGQFDPNPLVAGKGVAFLKEQG 120 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V ++E E + Y KR ++ LK AVS D I + +T + Sbjct: 121 IEVVTHVLEEEARALNKHYNVYYERKRPYVVLKQAVSLDGKIAVL-GKRTALTDDETSRF 179 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240 VH R AILVG TVL D+P L + P+R+ILD ++ LD +I Sbjct: 180 VHDERDDFHAILVGADTVLIDNPRLL--GSETSFCPPVRVILDEKGRVFDQLDLQIF-ED 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 APV I + ++ K++ +I ++ +L +L + + S+ VEGGA+V Sbjct: 237 NSAPVYIFSS-----RKVSDLPKHVTVIDLPEFSIENILQVLYEKKLQSVYVEGGASVHD 291 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +F+ S L D II Y + +IG + +F V D + IG N+ Sbjct: 292 AFLESGLFDEIISYVTPKLIGGNAKAA-------MSSFRLVSHALELDDFSCQKIGNNIR 344 Query: 361 L 361 L Sbjct: 345 L 345 >gi|120434994|ref|YP_860680.1| bifunctional riboflavin biosynthesis protein RibD [Gramella forsetii KT0803] gi|117577144|emb|CAL65613.1| bifunctional riboflavin biosynthesis protein RibD [Gramella forsetii KT0803] Length = 347 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 99/355 (27%), Positives = 164/355 (46%), Gaps = 19/355 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + +++ + ++ +G T NP V +IV +IG G G PHAEV A+ Sbjct: 2 NIHEKYIKRCIELAQNGLGTTYPNPMVGSVIVYKNKIIGEGWHKKAGEPHAEVNAINSVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ + A YV+LEPCSH+G++PPC+ II GI++V++ DP +V+GRG++ L Sbjct: 62 DQSLLKHAIIYVSLEPCSHFGKTPPCSDLIIAKGIKKVIIGTMDPFAKVAGRGIKKLMDA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFI 178 G + ++E E + T Q ++R +I LK A +QD I IT Sbjct: 122 GCEVNVGILEEECLELNKRFFTFQKKQRPYIILKWAQTQDGFIAPEKKDKKRPVWITNKY 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S VH R++ AILVG TV+ D+P L R +P+RII+D + K+S D ++ Sbjct: 182 SGQLVHKWRSEETAILVGTNTVIEDNPSLNVR--KWTGSNPVRIIIDQNLKISKDHSVLD 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNI--NIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 +++ NI I +++ +L + S+++EGG+ Sbjct: 240 E--KQKTVVLC----KKKTTGSEDGNIIFEEIEFSENISQEICDVLHKYDLQSVIIEGGS 293 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL--EKNFMCVRRDYFGSD 349 FI + L D + + G+ +P G EKN + +D Sbjct: 294 NTLQQFIKAGLWDEARVLTGSSYF-QSGVKAPEISGIPVAEKNISGDLLKIYKND 347 >gi|295424908|ref|ZP_06817620.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus DSM 11664] gi|295065347|gb|EFG56243.1| riboflavin biosynthesis protein RibD [Lactobacillus amylolyticus DSM 11664] Length = 347 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 180/353 (50%), Gaps = 10/353 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-EEARG 69 M AL+ + T NP V +IVKD V+ G + G HAE A+ + E+ Sbjct: 1 MQLALQEACKGRHQTWKNPLVGAVIVKDNHVLATGYHHHFGERHAERDAISKLTPEQLFN 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 +T YVTLEPC+H+G+ PPC+Q I+ I+RVV+ DP V+G+G+ L + GI + Sbjct: 61 STLYVTLEPCNHFGKQPPCSQLIVNKHIKRVVIAQIDPHKLVTGKGIAALKENGIQVATG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ +E + Y + IT+K A+S D+ + + IT + +VH RA Sbjct: 121 ILANEARKLNEHYTYFYETNQPWITVKQAISLDHKVAVRTNQRTKITNDLVYQKVHSERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVI 246 AI++G T + D+P L ++ ++SP+RI+LD +L LD K+ T A Sbjct: 181 DYQAIVIGSSTAIIDNPSLLTNVH--TDYSPIRIVLDRRGRLLKHLDLKLF-TDQKAQTW 237 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I TEN + + F K ++ + + ++ L + + S+ VEGG + SF+++ Sbjct: 238 IFTENKS-LSSHPFNNKFVHCFFSKNDSIGAMINELKNQELQSIYVEGGPTLEKSFLDNY 296 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 LV+ +I Y + ++G G+ + + +F V+ D ++V ++ +N+ Sbjct: 297 LVNELITYIAPDLLGANGVSAVSPSSF--HHFSDVKIDKLNNNVRIDERKQNV 347 >gi|190891194|ref|YP_001977736.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhizobium etli CIAT 652] gi|190696473|gb|ACE90558.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli CIAT 652] Length = 455 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 147/270 (54%), Positives = 190/270 (70%), Gaps = 1/270 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG + Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIY 269 A PVI+V + LA +++ Sbjct: 241 AREVPVILVASENVSHLAADAEGIPPSVLP 270 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 46/132 (34%), Positives = 62/132 (46%), Gaps = 3/132 (2%) Query: 225 DPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVG 284 DP +L L + P D + I+YC+ + LL L Sbjct: 325 DPADRLELRTPGRAEGGTTPT---DAADLDSRRAVLVAAGVEIVYCNPYHPEVLLPALAT 381 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 RG++SLLVEGGA A F+ + LVD I LY++ +VIGEGGI SPL+ + F + Sbjct: 382 RGISSLLVEGGAKTARLFLEAGLVDRIELYQAPVVIGEGGIESPLDATDIPSGFTHMGTQ 441 Query: 345 YFGSDVCLEYIG 356 FG D EY Sbjct: 442 MFGVDRLDEYER 453 >gi|307326834|ref|ZP_07606026.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] gi|306887597|gb|EFN18591.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] Length = 369 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 116/363 (31%), Positives = 175/363 (48%), Gaps = 16/363 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 ++ +A+ M A+ + +G TS NP V C+I+ G V+G G G PHAEV AL Sbjct: 3 TAAEAQAMRHAVALAARGLGHTSPNPVVGCVILDAGGRVVGEGWHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARG TA VTLEPC H GR+ PC+Q +I GI RV V DP + G + Sbjct: 63 AGDRARGGTALVTLEPCDHTGRTGPCSQALIAAGIARVHYAVGDPTAQARGGAATLAAAG 122 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + ++ E + +LT R + K A + D A S IT S+ Sbjct: 123 VEVEAGLLAEEAEAVNEPWLTAMRRGRPFVLWKFAATLDGRSAAADGTSRWITSPESRAD 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA++DA++VG GT ADDP L R P+R+++D + ++I+ A Sbjct: 183 VHRLRAEADAVVVGSGTQRADDPHLAVRDREGVT-QPLRVVVDTAATIKPGARILDDA-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAV 298 AP ++ D L R + + D + LL L GRGV S+L+EGG + Sbjct: 240 APTLLAVAEDASTAHLPRRP-GVETVRLPRADGGLAIPALLAELHGRGVRSVLLEGGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 A +F+ + VD +I Y + +++G G P+ L + + +R G D+ + Sbjct: 299 AGAFLAAGAVDKVIGYLAPVLLGAG--PAALADAGITTIAQALRLATADVTRLGPDLRVT 356 Query: 354 YIG 356 + Sbjct: 357 AVP 359 >gi|256787680|ref|ZP_05526111.1| riboflavin-specific deaminase [Streptomyces lividans TK24] Length = 405 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 188/385 (48%), Gaps = 33/385 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V+ + M AL + VG T +NP+V C+++ +G + GV G PHAEV AL Sbjct: 17 VAPRELAAMRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALR 76 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 A RG TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + Sbjct: 77 RARGRHRGTTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADA 136 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 +V ++ +E + L +LT R +T K A + D A + I+ S+ Sbjct: 137 GVEVVGGVLGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRA 196 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRA+ DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A Sbjct: 197 DAHELRARHDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA- 254 Query: 242 LAPVIIVTEND----DPVLALAFRKKNIN----------------IIYCDCR-----DLK 276 AP ++VT+ D + + IN ++ Sbjct: 255 -APTLVVTDPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPL 313 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYL 334 LL L GRGV S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ + PL G + Sbjct: 314 DLLAALDGRGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSI 373 Query: 335 --EKNFMCVRRDYFGSDVCLEYIGK 357 F D G D+ +E Sbjct: 374 REAHRFRITSVDRIGPDLRIELRPP 398 >gi|116617932|ref|YP_818303.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096779|gb|ABJ61930.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 344 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 149/323 (46%), Gaps = 14/323 (4%) Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A + + T NP V +IVKDG VI G G HAE+ A Sbjct: 3 DLTWMKLAADEAIRAMPYQTFENPRVGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62 Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVTLEPCS G+ CA I G++RVVV DP+ +G+G++ L G Sbjct: 63 KTEFLGATLYVTLEPCSTQGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNGKGIKMLRSAG 122 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I VD + E K A+ + ++ LK+A+SQ+ + +T ++ V Sbjct: 123 ITVDVLNTVENKEINPAFHYFYTTRLPYVQLKLAMSQNGFVAEKFGKRKKLTDELADTDV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA AI++G T++ D P LT R + P+R+++D +L Sbjct: 183 HRERATRSAIMIGSETMITDQPMLTVRHINISHKQPLRVVIDRRGRLQNT----NFDFSN 238 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I TEN K + + LK +L L + + S++VEGG ++ HSF+ Sbjct: 239 NWLIYTEN-------VLFSKQHSYVKLMSGALKDILIDLAKQNIQSVMVEGGPSLIHSFL 291 Query: 304 NSRLVDSIILYRSQIVIGEGGIP 326 L +++Y + V+ + + Sbjct: 292 KENLWQEMLIYTTDKVLSKDSLK 314 >gi|188994131|ref|YP_001928383.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis ATCC 33277] gi|188593811|dbj|BAG32786.1| putative riboflavin biosynthesis protein [Porphyromonas gingivalis ATCC 33277] Length = 330 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 115/331 (34%), Positives = 174/331 (52%), Gaps = 18/331 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ ++ G TS NP V ++V G +IG G G PHAEV A+ + Sbjct: 4 DPLYMRRAIELAQNAEGFTSPNPLVGAVLVAHGRIIGEGYHHCAGMPHAEVIAINSVRDR 63 Query: 67 A--RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A R +T YV+LEPCSHYG++PPCA+ I+ GI VVV + DP VSGRG++ L + Sbjct: 64 ALLRESTLYVSLEPCSHYGKTPPCAELILREGIPHVVVAMLDPFPSVSGRGIKMLRDASV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI----GMAGCGSVPITGFIS 179 + ++ E + +LT Q + R ++TLK A S D I A V ++ ++ Sbjct: 124 SVQVGLLAEEAEELNRHFLTAQRQHRPYVTLKWAESSDGFIDALRDDASTPPVRLSTPLT 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 VH R DAILVG T L D+P LT R +P+R++ D H L + Sbjct: 184 TRFVHHRRMIHDAILVGFRTALLDNPSLTVR--HWYGRNPLRVVTDRHLALPRHLTLFDG 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAA 297 + P ++ TE + P + +++ + D ++++L L RG+ SLLVEGGA Sbjct: 242 S--VPTLVFTEKEQP----SGYPSSVSFVRIDPSRPPVEQMLAELHARGIQSLLVEGGAC 295 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 + SFI+S L D + + RS I++ G+ +P Sbjct: 296 ILRSFIDSGLYDDVRIERSTIIL-NEGVRAP 325 >gi|21221143|ref|NP_626922.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)] gi|289771571|ref|ZP_06530949.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24] gi|8052397|emb|CAB92254.1| riboflavin-specific deaminase [Streptomyces coelicolor A3(2)] gi|289701770|gb|EFD69199.1| riboflavin biosynthesis protein RibD [Streptomyces lividans TK24] Length = 381 Score = 283 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 185/377 (49%), Gaps = 33/377 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + VG T +NP+V C+++ +G + GV G PHAEV AL A RG Sbjct: 1 MRRALELAGAEVGSTGSNPAVGCVLLDAEGTTVATGVHRGPGTPHAEVDALRRARGRHRG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRV+ V DP+ +G + +V + Sbjct: 61 TTAVVTLEPCDHQGRTGPCSKALIEAGVRRVLYAVADPNRVAAGGARRLADAGVEVVGGV 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + L +LT R +T K A + D A + I+ S+ H LRA+ Sbjct: 121 LGAEAEAVLEMWLTAVRAGRPFVTWKFAATLDGRSAAADGSARWISSAESRADAHELRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DA+LVG GT +DDP L R +G+ H P+RI LD +L DS+++ A AP ++VT Sbjct: 181 HDAVLVGSGTWRSDDPRLDLR-HGVVGHPPLRIALDARGELPPDSRLLDGA--APTLVVT 237 Query: 250 END----DPVLALAFRKKNIN----------------IIYCDCR-----DLKKLLTILVG 284 + D + + IN ++ LL L G Sbjct: 238 DPATGTADHGESESNNNSGINTSTNTSTSRGANSGPDVLRLKTDARGHFPPLDLLAALDG 297 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYL--EKNFMC 340 RGV S+LVEGG A+A SF+ + LVD ++ Y + +++G G+ + PL G + F Sbjct: 298 RGVRSVLVEGGPALAASFVRAGLVDRVVAYVAPLLLGSEGVSATGPLGIGSIREAHRFRI 357 Query: 341 VRRDYFGSDVCLEYIGK 357 D G D+ +E Sbjct: 358 TSVDRIGPDLRIELRPP 374 >gi|86159164|ref|YP_465949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775675|gb|ABC82512.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Anaeromyxobacter dehalogenans 2CP-C] Length = 392 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 126/357 (35%), Positives = 182/357 (50%), Gaps = 13/357 (3%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 RFM ALR + +G TS NP+V ++V+DG V+GRG A G PHAEV AL AG AR Sbjct: 27 RFMRLALREAARGLGRTSPNPAVGAVVVRDGRVVGRGHHARAGGPHAEVVALRAAGALAR 86 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GA Y TLEPC H+G++PPC+ ++E G+RRV V DP+ V+GRG+ L + G+ +V Sbjct: 87 GADVYTTLEPCDHFGKTPPCSVALLEAGVRRVFVGSSDPNPLVNGRGMARLRRSGVAVVK 146 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ + + T E+R +TLK AV+ D I + ++G ++ VH LR Sbjct: 147 GVLRDDCDRLNAPWFTFITERRPFVTLKAAVTLDGRIATRTGDARWVSGEAARAWVHRLR 206 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 + DA+LVG GT ADDP LT RL P+R++LD L + + AP ++ Sbjct: 207 DRVDAVLVGAGTARADDPRLTTRLP-RGGRDPIRVVLDSDLSLPRTLALFRGGSPAPTLV 265 Query: 248 VTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + ++ C DL+ LL L RGV LLVEGGA V F+ Sbjct: 266 AHAA---PAPARPYGPGVELLRCRRGKGGVDLRDLLAKLAARGVAHLLVEGGAHVHARFL 322 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIG 356 + LVD + ++ + + G G+P G V + G DV + + Sbjct: 323 EAGLVDRVAVFVAPKIAGGDGVPLVAGRGPARMADALRLDQVAFERVGDDVLVTGVP 379 >gi|242278131|ref|YP_002990260.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM 2638] gi|242121025|gb|ACS78721.1| riboflavin biosynthesis protein RibD [Desulfovibrio salexigens DSM 2638] Length = 377 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 104/376 (27%), Positives = 182/376 (48%), Gaps = 20/376 (5%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M + S D RFM+ A+ + T+ NP+V ++V+DG ++ G + G HAE + Sbjct: 1 MNSTLSPDERFMARAVELAIRGRNRTAPNPTVGAVMVRDGQIVAEGYHMFCGGLHAEREC 60 Query: 60 LEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + +A G + T YVTLEPC+H+G++PPC + I+E I +VV DP+ + +G G+ Sbjct: 61 IADAKAKGVDMSKCTMYVTLEPCNHHGKTPPCTEGILEASIPHIVVGTRDPNPKAAG-GI 119 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 ++L KG+ + ++E + K + +L Q + R++ LK+A + D I A ++ Sbjct: 120 EYLESKGVRVDQGVLEEQCKDLISDFLCWQFKDRAYSILKLACTVDGKIAGATGAQEAVS 179 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLD 233 S + V LR+ A++VG T+ D+P L CRL+ L E P +++ + + D Sbjct: 180 CPESFHDVQHLRSMVGAVIVGGNTLREDNPSLNCRLDPLPEGFSQPKAVVVTNNLPQNHD 239 Query: 234 SKIIKTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR-G 286 + T A I T E A + K I ++ + L+K T+L + Sbjct: 240 EYTLTTTRAADTIFWTSAEQAATKTASELKNKGIEVLPLPSNEKGLILEKGFTMLREKHN 299 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYL----EKNFMCV 341 V L EGG +A S LVD ++Y++ ++G G P+ + + Sbjct: 300 VLRTLCEGGGRLACSLAEQGLVDEFVMYQAPRILGNVDGRPNFAGSDNVLISEAMDLRIS 359 Query: 342 RRDYFGSDVCLEYIGK 357 R + G D+ + + + Sbjct: 360 RVEQSGRDLKIVFKPE 375 >gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1] gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1] Length = 369 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 104/310 (33%), Positives = 151/310 (48%), Gaps = 12/310 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 M AL + + L+S NP V C++V DG V+G+G T G PHAEV AL +A GE Sbjct: 7 HMHQALGLAAQALFLSSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGE 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPCSH GR+ PC +I G+ +VV + DP+ +V+G+G L G+ Sbjct: 67 DVRGATAYVTLEPCSHQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVD 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V E + + +R + + +K A S D + S IT ++ H Sbjct: 127 VVVGPGADESRELNIGFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ +L GIGTVL DDP L R + P ++D + L ++ ++ A Sbjct: 187 AWRARACTLLTGIGTVLEDDPRLNVR-DVATPRQPRIAVVDSRLDMPLTARALQGP--AE 243 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +I T + D A + +I DL +L L RG L VE G + Sbjct: 244 CLIYTSSRDASKTSALQDLGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNG 303 Query: 301 SFINSRLVDS 310 S + LVD Sbjct: 304 SLVREGLVDE 313 >gi|33866124|ref|NP_897683.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. WH 8102] gi|33639099|emb|CAE08105.1| putative Diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. WH 8102] Length = 354 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 112/354 (31%), Positives = 177/354 (50%), Gaps = 12/354 (3%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M AL + G TS NP V +++ ++G ++G G A G PHAEV AL +AG A Sbjct: 5 WMRRALALAALAEGRTSPNPLVGAVVLNREGRLVGEGFHARSGEPHAEVGALAQAGTAAA 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIVD 127 G T VTLEPC H+GR+PPC++ +++ G+ RVVV ++DPD RV+G G+ L + G +++ Sbjct: 65 GGTLIVTLEPCCHHGRTPPCSRAVLQAGVARVVVALEDPDPRVAGGGIAQLRKAGVVVIT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ E A+L R R LK A+ D + S I+G S+ VH LR Sbjct: 125 GVLRQEAAEQNRAFLHRVRTGRPWGVLKWAMGLDGRTALPNGTSQWISGADSRRWVHQLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 A DA++VG GTV ADDP LT R G ++ P+R++L L ++++ TA A ++ Sbjct: 185 AGCDAVIVGGGTVRADDPLLTSR--GRRDPEPLRVVLSRGLDLPAEAQLWDTASAA-TLV 241 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + + + + C+ L + L RG +L E G+ +A + I Sbjct: 242 AHGPEAAGKQAPNGPERLELEQCEPLPL---MQHLAARGCNQVLWECGSELAAAAIRQGC 298 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 V + + ++G +PL E F + + G + IG + L Sbjct: 299 VQEVAAVLAPKLMGGVAARTPLGELG----FTAMDQVLCGQLLPPRPIGDDWLL 348 >gi|148544108|ref|YP_001271478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri DSM 20016] gi|184153479|ref|YP_001841820.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112] gi|148531142|gb|ABQ83141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri DSM 20016] gi|183224823|dbj|BAG25340.1| riboflavin biosynthesis protein [Lactobacillus reuteri JCM 1112] Length = 352 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 11/345 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL-EEAGE 65 DA FM A+ + T NP V ++VK+G V+ RG T G HAE A+ + + Sbjct: 3 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ I Sbjct: 63 QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +++ + Y +R +TLK AVS D + IT VH Sbjct: 123 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLA 243 R IL+G T + D+P L + P+RI+LD +L + + + T A Sbjct: 183 TERGNFQGILIGSQTAIIDNPTLLTTSP--TKFPPVRIVLDRRGRLKDNPTLHLLTDGQA 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I TEN A K+I + Y + +L L + + S+ VEGG V +F+ Sbjct: 241 PTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAFL 297 Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 L + +I Y + ++GE G+P SP + + + + Sbjct: 298 RKGLFEELITYLAPQMLGEKGVPGMESPHQLHLAHQEIKVLENNI 342 >gi|189219671|ref|YP_001940312.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum infernorum V4] gi|189186529|gb|ACD83714.1| Pyrimidine deaminase and pyrimidine reductase [Methylacidiphilum infernorum V4] Length = 376 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 37/359 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M AL+++ GLTS NP+V ++VK+G +IGRG G HAE++A+E Sbjct: 21 NFSPEDRYWMKEALKWALLGEGLTSPNPAVGAVLVKEGTLIGRGYHRKAGQAHAEIEAIE 80 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A GE G+T YVTLEPCS +G++PPC + I++ I RVV DP+ R R ++ Sbjct: 81 DAKKRGESVAGSTLYVTLEPCSSWGKTPPCTERIVKEKISRVVASSPDPNPRNKPRAVEL 140 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L G+ + E + R + + + KIA++ D + I+G Sbjct: 141 LPSLGVDFSWEILEEALFLNRGFYHRILTGKPWVIGKIAMAIDGSLSAGVGEERWISGIA 200 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-SPMRIILDPHFKLSLDSKII 237 ++ H LR +DAIL+G T D+P LT RL + P R+I+ L D + Sbjct: 201 ARTVAHRLRMIADAILIGAQTARTDNPRLTIRLVDPKGKIQPWRVIVSRSGNLPGDLFLF 260 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A ++ + +++L L R V LLVEGGA Sbjct: 261 TDAFKERTLLFVK----------------------MPWERVLGELGSRDVGILLVEGGAE 298 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSD 349 V H I + + + S ++IG+ PLE+ + +F+ V F D Sbjct: 299 VLHQLIKEGWIQEVSFFLSPLIIGKQ----PLEDSSTDASFLSVPLELVNPSWQKFDED 353 >gi|168025673|ref|XP_001765358.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683411|gb|EDQ69821.1| predicted protein [Physcomitrella patens subsp. patens] Length = 393 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 110/375 (29%), Positives = 180/375 (48%), Gaps = 28/375 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DA +M + +R VG TS NP V C+IVKDG ++GRG G PHAEV AL EA Sbjct: 25 TEVDAFYMRMCVDLARQAVGKTSPNPIVGCVIVKDGRIVGRGFHPKAGEPHAEVFALREA 84 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G A+GATAYV+LEPC+HYGR+PPC+Q +++ ++RVVV V DP+ +V G+G++ L G Sbjct: 85 GPLAQGATAYVSLEPCNHYGRTPPCSQALVKAKLKRVVVGVVDPNPQVGGKGIKTLRNAG 144 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V + E+ +++ R R +TL+ ++S D S G SK Sbjct: 145 IEVVVGVEETLCLKANESFMHRMATGRPFVTLRYSMSMDGGFLGNMGLSNAQGGLYSK-- 202 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L ++DA+++ VL DDP+L G P+R+IL L ++SK+ T+ Sbjct: 203 ---LLQENDAVVITDAAVL-DDPDLLSSEPGA--KQPLRVILARSLDLPVESKVFDTSYA 256 Query: 243 APVIIVTEN-----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 +++ + D + R ++++ + L+ +L++ G TS+L Sbjct: 257 KTLVLADQKSCIDDIQRKSADGKSIEARLRAGGVDVVMMNDLTLENVLSVCYQLGATSVL 316 Query: 292 VEG-GAA-------VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 ++ G + ++ +++ + I +GE V Sbjct: 317 LDSRGPVSSGLENFLGQQALDEEAAQKVVVQVAPIFLGENRTEPCFRMDSDLVKLERVSS 376 Query: 344 DYFGSDVCLEYIGKN 358 G DV +E Sbjct: 377 HMVGQDVVIEGYFPE 391 >gi|227364534|ref|ZP_03848595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri MM2-3] gi|325682351|ref|ZP_08161868.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A] gi|227070371|gb|EEI08733.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus reuteri MM2-3] gi|324978190|gb|EGC15140.1| riboflavin specific deaminase [Lactobacillus reuteri MM4-1A] Length = 355 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 167/345 (48%), Gaps = 11/345 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL-EEAGE 65 DA FM A+ + T NP V ++VK+G V+ RG T G HAE A+ + + Sbjct: 6 DAYFMQMAIAEAAKAGNETWKNPRVGAVVVKNGQVLARGHTHEYGGIHAERDAIGKLTPK 65 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 + +GAT YVTLEPC+HYG+ PPC+Q II+ GIRRVV+ DP V+G+G+ L Q+ I Sbjct: 66 QGQGATLYVTLEPCNHYGKQPPCSQAIIDAGIRRVVIAETDPHKLVTGKGIATLQQQNII 125 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +++ + Y +R +TLK AVS D + IT VH Sbjct: 126 VKTGVLKEAAQALNPYYDFFYRYQRPWVTLKQAVSLDYRVAAEKGQRTAITNSAVAKMVH 185 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-IKTALLA 243 R IL+G T + D+P L + P+RI+LD +L + + + T A Sbjct: 186 TERGNFQGILIGSQTAIIDNPTLLTTSP--TKFPPVRIVLDRRGRLKDNPTLHLLTDGQA 243 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P I TEN A K+I + Y + +L L + + S+ VEGG V +F+ Sbjct: 244 PTWIFTENSSLQDQFA---KSIQVFYRRTWSINDILHELGRQEIQSVYVEGGPTVHQAFL 300 Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 L + +I Y + ++GE G+P SP + + + + Sbjct: 301 RKGLFEELITYLAPQMLGEKGVPGMESPHQLHLAHQEIKVLENNI 345 >gi|258405543|ref|YP_003198285.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM 5692] gi|257797770|gb|ACV68707.1| riboflavin biosynthesis protein RibD [Desulfohalobium retbaense DSM 5692] Length = 384 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 108/365 (29%), Positives = 177/365 (48%), Gaps = 19/365 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M A+ G T+ NP V +I ++G V+ G G PHAEV+A+ +A G + Sbjct: 1 MQHAVELGETGFGRTAPNPCVGAVITRNGAVMAEGYHTACGAPHAEVEAIAQARAAGVDL 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 T +VTLEPC+H+GR+PPC + IIE GIR V + DP+ V G G +L +G+ + Sbjct: 61 SECTLWVTLEPCNHHGRTPPCTKAIIEAGIRSVGIGTLDPNPHVGGGGTAFLRDQGVEVE 120 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E + + +L Q EKR + LK+A + D I S ++G ++ +VH L Sbjct: 121 VGILEPACRDLIADFLLWQQEKRPGVLLKLAATLDGKIATRSGHSAWVSGPEAREEVHGL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALLAPV 245 R + D +LVG GT+ AD+P LTCR P+ +++ + D +++ + Sbjct: 181 RGRVDGVLVGGGTLRADNPRLTCRSERALNKQPLALVVTSRLPEAQDDLHLLRHRPQETI 240 Query: 246 IIVTEN------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS-LLVEGGAAV 298 T++ D + AL R ++ + DL+ LT +G+ +L EGG + Sbjct: 241 FWTTDDQSRTPQADALRALGCRIWDLPLTASGMLDLRAGLTHFFDQGLGHTILCEGGGRL 300 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352 A + L D + LY + ++G+ L G E + + R G+D+CL Sbjct: 301 ALALAEQGLADRLRLYLAPKILGD-ATAINLFSGRDELDMGQALPWRFTRSRQVGADMCL 359 Query: 353 EYIGK 357 E + Sbjct: 360 ELRPQ 364 >gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans K601] gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans K601] Length = 370 Score = 281 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 172/356 (48%), Gaps = 15/356 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65 F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A G Sbjct: 7 FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L GI Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + + + +R V + +K A S D + +A S IT ++ H Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L GIGTVL DDP L R P +++D + L +++ Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREV-ATPRQPHLVVVDSRLQTPLGARLFDVPGR-R 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V I + P A A R + +I DL +L L GV L +E G + Sbjct: 245 VFIYAADGHPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNG 304 Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ LVD ++LY + +++G G G+ S PL+ G D+ L Sbjct: 305 SFLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRL 360 >gi|227514654|ref|ZP_03944703.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lactobacillus fermentum ATCC 14931] gi|227086963|gb|EEI22275.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Lactobacillus fermentum ATCC 14931] Length = 345 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 111/345 (32%), Positives = 158/345 (45%), Gaps = 9/345 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARG 69 M AL + T NP V +IVKDG ++ G G HAE A+ + + E+ G Sbjct: 1 MQLALAEAAKGGSATWKNPQVGAVIVKDGQLLATGYHHQYGQAHAERDAISKLSNEQLAG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPC HYG+ PPC+Q +I+ RVVV DP V G+G+ L GI + Sbjct: 61 ATIYVTLEPCFHYGKQPPCSQLLIDSHFARVVVATIDPHQVVGGKGIAQLKAAGIDVEVG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +++ + + Y ++R IT K A+S D + A + IT ++ VH RA Sbjct: 121 LLKDQAEALNRHYFYFYRQQRPWITAKQALSLDGKVAAAPGQATAITNQAARRLVHQERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVII 247 AI+VG GTVLADDP L C L P+R+ILD + L + + T AP + Sbjct: 181 DYHAIVVGAGTVLADDPRLLCETPQL--FPPVRVILDRAGRLLDYQDRFVFTDASAPTWL 238 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 VT N ++ + D +LL + SL VEGG AV + Sbjct: 239 VTTNRAATKVDW--PAHVTVKLLQNGDWPELLDYFKEAELQSLYVEGGPAVLTELFQAVP 296 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 V+ +I Y +IG+ G+ V G D+ + Sbjct: 297 VNQLITYLDPQIIGDQGLAGAQFPVGTAFTHRTV--TQLGDDIRI 339 >gi|262340928|ref|YP_003283783.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272265|gb|ACY40173.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 343 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 171/348 (49%), Gaps = 18/348 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FMS A++ ++ +G+TS NP V C+I ++G +I G G HAE A+ ++ Sbjct: 5 ETFMSRAIQLAKNGLGMTSPNPMVGCVIERNGFIISEGWHYKKGMDHAEAIAINRIKNKS 64 Query: 68 --RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YVTLEPC H+G + PC II+ I R+VV + DP +V G G+Q L + GI Sbjct: 65 LFLDSTLYVTLEPCVHFGETSPCVDLIIKNHIPRIVVGIQDPHDKVKGLGIQKLKEYGIE 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ +++++ + + T + R +I LK A S D IG ++ I+G ++ H Sbjct: 125 VIENVLKNKCRFLNKRFFTFHEKNRPYIILKWAQSHDGFIGSENKKNIWISGTYARQLNH 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA+ D+ILVG TVL D+P+L R +P+RI +D K+S I+ Sbjct: 185 KWRAEEDSILVGRKTVLNDNPKLNVR--EWFGSNPIRIFIDKKLKISDSHFILDGTQ--K 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 I+ TE + I + + + +L L + + SL+VEGG SFI Sbjct: 241 TIVFTEK----KKENQKNIEYIQISFEGKIINHILNFLYKKNILSLIVEGGKKTLESFIK 296 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + D ++ + + + G+ +P G + K GSD+ Sbjct: 297 ENVWDECRIFVCDVTL-KKGLKAPRIGGEVFKKMN------IGSDLLF 337 >gi|50843212|ref|YP_056439.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes KPA171202] gi|50840814|gb|AAT83481.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes KPA171202] gi|315106176|gb|EFT78152.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL030PA1] Length = 331 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G+G Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGDGRA 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|328881089|emb|CCA54328.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase or 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces venezuelae ATCC 10712] Length = 417 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 119/354 (33%), Positives = 172/354 (48%), Gaps = 17/354 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M A+ + +G TS NP V C++ G +G G G PHAEV AL EAG Sbjct: 66 DITAMRRAVELAARGLGATSPNPVVGCVVTDASGRPVGEGWHQRAGGPHAEVHALREAGA 125 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARG TAYVTLEPC+H GR+ PCAQ +IE GI RVV V DP+ + G L G+ Sbjct: 126 LARGGTAYVTLEPCNHTGRTGPCAQALIEAGISRVVYAVGDPNP-QATGGADTLRAAGVD 184 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E + A+LT R + K A + D I A S IT S+ VH Sbjct: 185 VRQGLLEDEAEAVNLAWLTSVRRGRPFVRWKYAATLDGRIAAADGTSRWITSAESRADVH 244 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLA 243 LRA++DA++VG GT DDP L R P+R+++D + ++++ A Sbjct: 245 RLRAEADAVVVGSGTARTDDPHLAVRGIDAAV-QPLRVVVDTEATAVKAGARVLDDA-AP 302 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I V E+ D L R + LL L RGV S+L+EGG +A +F+ Sbjct: 303 TLIAVAEDADTALTDVVRLPRAE----RGLSVPALLDALHARGVRSVLLEGGPTLAGAFV 358 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352 + VD ++ Y + +++G G P+ L + G+D+ + Sbjct: 359 AAGAVDQVVGYLAPVLLGAG--PNALAGAGISTITDALRLDITETVRVGTDLRI 410 >gi|289424953|ref|ZP_06426732.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK187] gi|289154652|gb|EFD03338.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK187] gi|313763122|gb|EFS34486.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL013PA1] gi|313793372|gb|EFS41430.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA1] gi|313800984|gb|EFS42252.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA2] gi|313812185|gb|EFS49899.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL025PA1] gi|313814722|gb|EFS52436.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL059PA1] gi|313828278|gb|EFS65992.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL063PA2] gi|313838062|gb|EFS75776.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL086PA1] gi|314914448|gb|EFS78279.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA4] gi|314917772|gb|EFS81603.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA1] gi|314919502|gb|EFS83333.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL050PA3] gi|314930094|gb|EFS93925.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL067PA1] gi|314957061|gb|EFT01166.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL027PA1] gi|314957695|gb|EFT01798.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA1] gi|314963428|gb|EFT07528.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL082PA1] gi|314968931|gb|EFT13029.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA1] gi|315077277|gb|EFT49339.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL053PA2] gi|315079956|gb|EFT51932.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL078PA1] gi|315097872|gb|EFT69848.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL059PA2] gi|315100736|gb|EFT72712.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL046PA1] gi|315109263|gb|EFT81239.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL030PA2] gi|327451322|gb|EGE97976.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA3] gi|327451701|gb|EGE98355.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL092PA1] gi|327452164|gb|EGE98818.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL083PA2] gi|328752420|gb|EGF66036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA1] gi|328755093|gb|EGF68709.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL025PA2] Length = 331 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 164/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|327405290|ref|YP_004346128.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM 16823] gi|327320798|gb|AEA45290.1| riboflavin biosynthesis protein RibD [Fluviicola taffensis DSM 16823] Length = 347 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 174/353 (49%), Gaps = 25/353 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++M AL+ ++ + NP V +IV + +IG G G HAEV A+ Sbjct: 2 NLDEKYMLRALQLAKSGGISVAPNPLVGAVIVHNQQIIGEGYHQKYGEAHAEVNAVNSVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ +T YVTLEPCSH+G++PPCA ++ +RVV+ DP V+GRG++ L Sbjct: 62 DKSLLSESTIYVTLEPCSHFGKTPPCADLLVHSQFKRVVIAQIDPFSEVAGRGIEKLKNA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGCGSVPITG 176 GI + ++ESE K ++T +KR ITLK A ++D I G I+ Sbjct: 122 GIQVDCGILESEAKELNKRFITFHTKKRPFITLKWAQTKDGFIDRDRSQDKEIGINWISQ 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ H +R+ AILVG T+ D+P LT R+ +P+RII+DP+ K ++ I Sbjct: 182 PETQVITHQMRSTEQAILVGWKTIQNDNPSLTTRV--FTGPNPIRIIIDPNLKAPKNATI 239 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 L ++ + ++ + +I + + D K +L L + S+++EGGA Sbjct: 240 FTDGL--KTVVFNKTEEKTI------NSIQYVRLESIDSKSILRKLHELQINSVIIEGGA 291 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 FI+S D ++ ++GE + ++ L + + + FG D Sbjct: 292 FTLTQFIDSSNWDEALI-----IVGENQFKTGIKAPILPQ--IPYKSIQFGKD 337 >gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans BC] gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans BC] Length = 370 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 172/356 (48%), Gaps = 15/356 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GE 65 F++ AL + + L++ NP V C+I G V+G+G T G PHAEV AL +A G Sbjct: 7 FITQALGLAAQALFLSNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGN 66 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + RGATAYVTLEPC+H GR+ PC +I+ GI RVV ++DP+ V G+G L GI Sbjct: 67 DVRGATAYVTLEPCAHQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGID 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + + + +R V + +K A S D + +A S IT ++ H Sbjct: 127 VQVGPGAQQSRELNIGFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGH 186 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA++ A+L GIGTVL DDP L R P +++D + L +++ Sbjct: 187 AWRARACAVLTGIGTVLEDDPLLNVREV-ATPRQPHLVVVDSRLQTPLGARLFDVPGR-R 244 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V I + P A A R + +I DL +L L GV L +E G + Sbjct: 245 VFIYAADGPPDRAQALRARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNG 304 Query: 301 SFINSRLVDSIILYRSQIVIGEG--GIPS--PLEEGYLEKNFMCVRRDYFGSDVCL 352 SF+ LVD ++LY + +++G G G+ S PL+ G D+ L Sbjct: 305 SFLREGLVDELLLYLAPLLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRL 360 >gi|261749554|ref|YP_003257240.1| riboflavin biosynthesis protein RibD [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497647|gb|ACX84097.1| riboflavin biosynthesis protein RibD [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 347 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 168/344 (48%), Gaps = 16/344 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE--EA 67 FM A++ ++ +GLTS NP V CLI ++G+++ G G HAEV A+ Sbjct: 7 FMYRAIQLAKNGLGLTSPNPMVGCLIERNGLILSEGWHYKVGMDHAEVNAINRVENTSLL 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC H+G++PPC II+ I RVV+ + DP +V+G G+Q L + GI ++ Sbjct: 67 TDSTLYVTLEPCVHFGKTPPCVDLIIKSKIPRVVIGIQDPCHKVNGLGIQKLRENGIEVI 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM----AGCGSVPITGFISKNQ 182 + ++ + +I + T +KR +I LK A S D + I+G S+ Sbjct: 127 ENVLRDQCRILNKRFFTFYEKKRPYIILKWAQSDDGFMDSLKRNEKKKPSWISGIYSRQL 186 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H R++ D+ILVG TV D+P+L R P+RI +D +S I+ Sbjct: 187 SHKWRSEEDSILVGRKTVFNDNPKLDVR--EWFGSDPIRIFMDRKLSISASYFILDGTK- 243 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I+ TE + I D +K + L + + SL+VEGG SF Sbjct: 244 -KTIVFTEK----KKENQKNTEFVQISFDKEIIKNIFNYLYQKNILSLIVEGGRMTLESF 298 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 I + + D ++ I + + G+ +P+ +G + KN RD Sbjct: 299 IKANIWDESRIFICNIFL-KDGLKAPVIDGRVIKNMYIGERDKL 341 >gi|78212460|ref|YP_381239.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Synechococcus sp. CC9605] gi|78196919|gb|ABB34684.1| riboflavin biosynthesis protein RibD [Synechococcus sp. CC9605] Length = 349 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 108/352 (30%), Positives = 176/352 (50%), Gaps = 13/352 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G TS NP V +++ +G ++G G A G HAEV AL +AG+ A+G Sbjct: 1 MRRALALAALAEGHTSPNPLVGAVVLDCEGRLVGEGFHARAGDAHAEVGALRQAGDAAQG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T VTLEPC H+GR+PPC++ ++ GI RVV+ ++DPD RV G G++ L Q G+ ++ Sbjct: 61 GTLVVTLEPCCHHGRTPPCSEAVLRAGIGRVVIALEDPDPRVDGGGIRQLRQAGLEVISG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + A+L R R LK A+S D + S I+G +++ VH LR+ Sbjct: 121 VLREEARQQNRAFLHRVRTGRPFGILKWAMSLDGRTALPNGASQWISGPPARDWVHRLRS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA++VG GTV DDP LT R G + P+R++L L +++ TA+ ++ Sbjct: 181 GMDAVVVGGGTVRGDDPLLTSR--GRRSPEPLRVVLSRSLDLPDQAQLWDTAVAPTLVAH 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 DP + + + + ++L+ L RG +L E G +A + I V Sbjct: 239 GPEADPQRLPSGPDE----LVLSACEPEQLMEALAQRGCNQVLWECGPELAAAVIRQGCV 294 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRDYFGSDVCLEYI 355 I + ++G +PL + + + + + G+D L + Sbjct: 295 QEIAAVVAPKLMGGMPARTPLGDLHFSAMDQVLQGQWHQSEPVGNDWLLRWR 346 >gi|282855094|ref|ZP_06264426.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139] gi|282581682|gb|EFB87067.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J139] Length = 331 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G + Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylibium petroleiphilum PM1] gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylibium petroleiphilum PM1] Length = 377 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 175/364 (48%), Gaps = 19/364 (5%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 + ALR + +GL+ NP V C+I DG ++ G T G HAEV AL A G Sbjct: 10 ALALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSALRAAQAAGHTV 69 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG TA+VTLEPCSH+GR+PPC ++E G+ V+V + DP+ V+G G+ L GI V Sbjct: 70 RGGTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGIGRLRAAGIDVT 129 Query: 128 RMMESEGKIF-----LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + +L+R + +R + LKIA S D + S ITG ++ Sbjct: 130 VLAPGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLSQWITGDAARTD 189 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H R ++ A+L GIGTV+ DDP L RL P R+++D ++LD++I+ Sbjct: 190 GHAYRKRAGAVLTGIGTVIDDDPRLDVRLVD-TVLQPCRVVVDSKLDIALDARILSPPGE 248 Query: 243 APVIIVT--ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 V + ++ ++++ C DL +L L R + L VE G+ Sbjct: 249 RLVYTASALARHAAPKVRELAEQGVSVLACANADGKVDLGAMLDDLARREINELHVEAGS 308 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEG---GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ SF+ + LVD ++Y + +++G G PL V + G+D+ L Sbjct: 309 KLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEGLALEFVSVERVGADLRLI 368 Query: 354 YIGK 357 Sbjct: 369 ARPP 372 >gi|319778563|ref|YP_004129476.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella equigenitalis MCE9] gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella equigenitalis MCE9] Length = 379 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 156/333 (46%), Gaps = 14/333 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG-----E 65 M A S L NP V C+IV + +IG G T G HAE+ AL++A + Sbjct: 1 MRLAYEASLKTRFLPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHED 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A YVTLEPCSH+GR+PPC +I GI+ VV+ DP+ V G G++ L GI Sbjct: 61 LIADAILYVTLEPCSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIK 120 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + M E + +R + + KIA S D I + S IT S+N H Sbjct: 121 VEVGFMLEEVLELNLGFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA+S +L G GTVLAD+P+L R +P+ I+D + + + Sbjct: 181 YWRARSSIVLTGAGTVLADNPKLNVRHFN-TPRAPLIGIVDRELNI-ITKPKLSIFSNPK 238 Query: 245 VIIVTENDD-PVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAV 298 V + E L L +NI ++ C D L +LL L V + +E G+ + Sbjct: 239 VYVFGEMAKVQDLGLVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 SF + L+D ++ Y++ +V+G P ++E Sbjct: 299 NTSFYEAGLIDELLWYQAPLVLGNCNSPFNIKE 331 >gi|325288196|ref|YP_004263986.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489] gi|324323650|gb|ADY31115.1| riboflavin biosynthesis protein RibD [Cellulophaga lytica DSM 7489] Length = 350 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 102/359 (28%), Positives = 170/359 (47%), Gaps = 26/359 (7%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +++ ++ ++ +G T NP V LIV + +IG G T+ G HAEV A+ ++ Sbjct: 5 EKYILRCIQIAKNGLGSTFPNPMVGALIVHNNAIIGEGFTSPYGGSHAEVNAINSIKDKS 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPCSHYG++PPCA II+ I +V+ + DP +V+G G++ L G Sbjct: 65 VLKESTIYVTLEPCSHYGKTPPCADLIIKHKIPNIVIGLKDPHEKVAGNGIKKLRAAGCN 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFI 178 + ++E E + + +L +KR +I LK A + D I A IT Sbjct: 125 VTIGVLEEECREHHNRFLCFYEKKRPYIILKWAETNDGFIAPLQEKRSATPEPFWITTKA 184 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ VH R++ ILVG T++ D+P+L R SP RII+D + K+ I+ Sbjct: 185 ARQLVHQWRSEEQGILVGTNTIIEDNPKLDVR--NWHGKSPTRIIIDQNLKIDASKNILN 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTSLLVEGGA 296 T+ I++T+ + L + I + + + IL + S+++EGG+ Sbjct: 243 TS--VKTIVITKESNKNEQL----QGIIYESVNFKKPLAMQICNILHKHNILSVIIEGGS 296 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +FIN L D ++ GI +P G L+ + +D Y Sbjct: 297 KTLQTFINENLWDEARVFTGTTNF-NKGIAAPKFTGKLK------STNTIKTDTLKTYY 348 >gi|332662070|ref|YP_004444858.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis DSM 1100] gi|332330884|gb|AEE47985.1| riboflavin biosynthesis protein RibD [Haliscomenobacter hydrossis DSM 1100] Length = 351 Score = 281 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 113/342 (33%), Positives = 164/342 (47%), Gaps = 21/342 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 R+++ +R G S NP V ++V D +IG G G HAEV AL R Sbjct: 7 RYITRCFDLARMGAGSVSPNPMVGAVLVYDNKIIGEGYHQKYGGAHAEVNALASVSLSNR 66 Query: 69 G----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +T YV+LEPC +G++PPC II+ I RVV+ D V GRG++ L GI Sbjct: 67 PLIPESTLYVSLEPCCIFGKTPPCTNLIIQEKIPRVVISCLDLTPEVKGRGVELLRAHGI 126 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++E EG+ ++R ++ LK+A++ + IT ++K V Sbjct: 127 EVTTGVLEKEGQALAATRNVSVSQQRPYVILKMAITSNGYFAPLDRSQFWITQTLTKRLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H R +SDAILVG T L DDP+L RL SP+RI+LD +L K+ Sbjct: 187 HRWRMESDAILVGTTTALMDDPQLDNRL--YYGKSPLRIVLDRRLQLPNSLKVFSDGQ-- 242 Query: 244 PVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P +I+TE + + A ++N DL +L GV +LVEGG V S Sbjct: 243 PTLIITEREKSINSASHLHYLSMNFGETFWPDLLAILWREYKLGV--ILVEGGQKVLSSL 300 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMC 340 I++ L D ++++IG+ GIPSP G EKN Sbjct: 301 IDTGLWDE-----ARVLIGQKSLTVGIPSPTLPGSPEKNLKL 337 >gi|94986602|ref|YP_594535.1| pyrimidine reductase, riboflavin biosynthesis [Lawsonia intracellularis PHE/MN1-00] gi|94730851|emb|CAJ54213.1| Pyrimidine reductase, riboflavin biosynthesis [Lawsonia intracellularis PHE/MN1-00] Length = 382 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 172/371 (46%), Gaps = 26/371 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE---A 67 M A+ + T+ NP V +++++G ++ G + G PHAEV + +A + Sbjct: 13 MKYAISIAEKGRWDTAPNPVVGSVLIQNGKIVAEGFHSLYGGPHAEVLCINDAKNKHINL 72 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 T TLEPC+HYG++PPC + II+ I+ V++ DP ++ G+ L+ GI + Sbjct: 73 SDCTLITTLEPCNHYGKTPPCTKAIIDNNIKHVIIGTKDP-TTLASGGVHTLTSAGITVE 131 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++E E + + ++T Q R +I LK+A + D I + S I+ +S+ +VH L Sbjct: 132 VGILEKECQALIADFITWQNTSRPYILLKLATTLDGKIATSTGHSKWISSEVSRQKVHKL 191 Query: 187 RAQS----DAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTA 240 R AIL+G T+ D+P+LTCR N P+ II+ D + + Sbjct: 192 RENVGKVGGAILIGGNTLKLDNPQLTCRNNNNNNKIQQPLAIIITSTLPEQQDIYLFNSR 251 Query: 241 LLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGR-----GVTSLLV 292 +I T ++ A RKK + I+ DL +LT + G +L Sbjct: 252 PTETIIYTTPQSGSTQQATTLRKKGVKIVTLKNWSPDLSAILTDITEHIRSTQGCLYMLC 311 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG------YLEKNFMCVRRDYF 346 EGG + S + + LVD + +Y S ++G+ P+ G + + + Sbjct: 312 EGGGKLGSSLLKANLVDELHIYLSPKILGDNNA-LPIVNGRNPLTIHDAISLKIHTMELS 370 Query: 347 GSDVCLEYIGK 357 GSD+ L + + Sbjct: 371 GSDIHLTFRPE 381 >gi|150019955|ref|YP_001305309.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis BI429] gi|149792476|gb|ABR29924.1| riboflavin biosynthesis protein RibD [Thermosipho melanesiensis BI429] Length = 337 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 168/349 (48%), Gaps = 21/349 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M A+ S+ +G S NP V +IVK+G +IG G G HAE A+ A E+ Sbjct: 2 EKYMKLAIELSKKGIGKVSPNPLVGAVIVKNGKIIGMGYHERYGGFHAERNAILNAKEDV 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 +G++ +V LEPCSH+G++ PC II GI +V + DP+ V+G+G++ L + GI VD Sbjct: 62 KGSSLFVNLEPCSHHGKNLPCVDLIISSGISKVYIASVDPNPLVNGKGIEKLKKNGIEVD 121 Query: 128 -RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E K + +K ++ LK+A++ D I + S IT + N H L Sbjct: 122 VGLLSDEAKYLNRVFFKYITKKLPYVALKVALTLDGFIADSNGNSKWITK-QNFNVSHSL 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R +ILVG TVL D+P LTCR G +P+RI+LD ++L A I Sbjct: 181 RNFFSSILVGANTVLKDNPRLTCRNGG---RNPVRIVLDRDG-ITLGRGFNVYNEEARTI 236 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + + + D +L+ L G+ S+L+EGGA+V F+ Sbjct: 237 VFS--------KCCQGTLECYPETEPFD---ILSRLYNLGIDSVLIEGGASVLSQFL--N 283 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLE 353 D + L+ S + G G P ++ +N F + LE Sbjct: 284 FADELHLFYSTKIFGRGLSPFENIIKFVSQNMEFKIRNLKRLEDEFYLE 332 >gi|47497547|dbj|BAD19619.1| putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group] gi|47847589|dbj|BAD21976.1| putative riboflavin biosynthesis protein ribD [Oryza sativa Japonica Group] Length = 622 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 99/358 (27%), Positives = 166/358 (46%), Gaps = 26/358 (7%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 LEP YG S + +++ GI RVVV + P + G+ +Q L +GI VD + E Sbjct: 129 NLEPGDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLH 187 Query: 135 KI-----------FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 L R + LK A++ D I + + ++G S+ +V Sbjct: 188 SKLFKEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRV 247 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR +SDAI+VG TV DDP LT R ++ H P+RI++ L ++ + Sbjct: 248 FELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAY 305 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ L K + ++ D + + +++ RG S+L E G +A S I Sbjct: 306 TIVATQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAI 365 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 ++ ++ + + + +IG P+P+ E + + + DV E I +++ + Sbjct: 366 SASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 419 >gi|289427738|ref|ZP_06429450.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165] gi|289159229|gb|EFD07421.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes J165] gi|313808724|gb|EFS47178.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL087PA2] gi|313817904|gb|EFS55618.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL046PA2] gi|313819816|gb|EFS57530.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA1] gi|313823306|gb|EFS61020.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA2] gi|313824948|gb|EFS62662.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL063PA1] gi|314925876|gb|EFS89707.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL036PA3] gi|314960753|gb|EFT04854.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA2] gi|314979409|gb|EFT23503.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL072PA2] gi|314986170|gb|EFT30262.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA2] gi|314988782|gb|EFT32873.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA3] gi|315083284|gb|EFT55260.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL027PA2] gi|315086943|gb|EFT58919.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL002PA3] gi|315089869|gb|EFT61845.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL072PA1] gi|327325060|gb|EGE66866.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL096PA3] gi|327449258|gb|EGE95912.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL013PA2] gi|328756397|gb|EGF70013.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL020PA1] Length = 331 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ RGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDVRGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|2766596|gb|AAB95439.1| homologue of Bacillus subtilis ribG [Shigella flexneri] Length = 245 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 102/244 (41%), Positives = 139/244 (56%), Gaps = 12/244 (4%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE Sbjct: 2 QDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGID 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + +M SE + +L R +I LK+ S D MA S IT ++ V Sbjct: 122 VSHGLMMSEPEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQ 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLD 233 RAQS AIL TVLADDP LT R + L E P+RI++D +++ + Sbjct: 182 RQRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPE 241 Query: 234 SKII 237 +I+ Sbjct: 242 HRIV 245 >gi|239905200|ref|YP_002951939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio magneticus RS-1] gi|239795064|dbj|BAH74053.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio magneticus RS-1] Length = 381 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 108/374 (28%), Positives = 178/374 (47%), Gaps = 24/374 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L EA Sbjct: 4 DNDAVFMARALELAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLREAE 63 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + GAT YVTLEPC+H+G++PPC++ ++E G+ RVV+ DP+ V+G G + L Q Sbjct: 64 ERGIDPAGATMYVTLEPCNHFGKTPPCSRTVLEAGVSRVVIGCLDPNP-VAGGGAETLRQ 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++ E + + ++ + R ++TLK+A++ D I S ++G S+ Sbjct: 123 GGVAVDVGILGQECRDAVADFVVYKTMGRPYVTLKLAMTLDGRIAARTGDSAWVSGPESR 182 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----HSPMRIILDPHFKLSLDSKI 236 +VH +RA S A++VG GT ADDP LT RL + P+ +++ D++ Sbjct: 183 RRVHRMRAASQAVMVGGGTFRADDPRLTHRLEVVDPLSGNPQPLAVVVTRSLP-PADARF 241 Query: 237 IKTALLAPVIIVTEN---DDPVLALAFRKKNINIIYCDCRDLKKL-----LTILVGR-GV 287 +P ++ + LA K+ + + RD +L LT L V Sbjct: 242 ALVRERSPSLVFLTSEAEARAAAGLALAKRGVRVYGLPLRDEGELDLLPGLTRLRDEARV 301 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP----LEEGYLEKNFMCVR 342 LL EGG +A + L D + L+ + V+ + +P + F Sbjct: 302 FRLLCEGGGGLAGQLVAQGLADELALFYAPKVLADAEAVPGFSGRIIPRMADAAGFRFCG 361 Query: 343 RDYFGSDVCLEYIG 356 G D+ + Sbjct: 362 LRQVGEDILVTARP 375 >gi|171779591|ref|ZP_02920547.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281693|gb|EDT47127.1| hypothetical protein STRINF_01428 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 351 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 175/361 (48%), Gaps = 21/361 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D +MS A+ ++ T TNP V +IVKD VI RG G HAE A+ Sbjct: 1 MDNYYMSQAIAEAKKGFRQTYTNPLVGAVIVKDNHVIARGAHLQYGHEHAEKNAILHCQT 60 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 EE +T YVTLEPC H G+ PPC Q I+ GI++VVV DP+ V+G+GL +L ++G Sbjct: 61 PEELVDSTLYVTLEPCHHRGKQPPCTQAILAAGIKKVVVGQLDPNPLVAGKGLAFLKEEG 120 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V ++E E + Y +R ++ LK AVS D I + +T + Sbjct: 121 IEVVTGVLEEEARGLNSHYNFYYENQRPYVVLKQAVSLDGKIAVL-GKRTALTDAETNRF 179 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL--DSKIIKTA 240 VH R AILVG TVL D+P L G + +R+ILD ++ D +I T Sbjct: 180 VHDERDDYQAILVGADTVLIDNPRLL--GAGTSLYPIVRVILDEAGRVFERRDLQIF-TD 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP++I +++ + ++ +I + +L +L + S+ VEGGAAV Sbjct: 237 DSAPILIFSKH-----KVTDLPSHVKVIDLPEFSIANILRVLYDEKIQSVYVEGGAAVHD 291 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +F++S L D II Y + +IG G + +F V D + IG + Sbjct: 292 AFLDSGLWDEIISYVTPKLIGGNGKAA-------MSSFRLVEEVLELQDFSCQKIGNTIR 344 Query: 361 L 361 L Sbjct: 345 L 345 >gi|89070868|ref|ZP_01158107.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus HTCC2516] gi|89043556|gb|EAR49766.1| riboflavin biosynthesis protein RibD [Oceanicola granulosus HTCC2516] Length = 362 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 124/365 (33%), Positives = 187/365 (51%), Gaps = 13/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D RFM+ AL R +G T NPSV C++V+DG ++ R TA GG PHAE++AL Sbjct: 1 MNEADGRFMALALGLGRQGLGRTWPNPSVGCVLVRDGRILARARTADGGRPHAEMRALAA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A + RGATAYVTLEPC+H G +P CA + G+ RVV+ D D R +G+G+ L Sbjct: 61 A--DPRGATAYVTLEPCAHVGETPACASELARAGVARVVIGCADADARTAGQGVAILRAA 118 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + + E+E + +L+R R +TLK+A S D I A S ITG ++ Sbjct: 119 GVAVTTGVREAEARALHAGFLSRVERGRPALTLKLAASLDGRIATATGESQWITGTEARR 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA+ DA++VG GT ADDP LT R G+ P+R+++ L D ++ TA Sbjct: 179 HVHALRARHDAVMVGAGTARADDPALTVRGLGI-ARQPVRVVVSRRLDLPRDGRLAATAR 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGA 296 P+ + D + A + + D + +L L G+TS+ EGG Sbjct: 238 DVPLWLCHGPDAAAASRAAWEAAGARLLPCAVDHGQLAPESVLAALGAAGLTSVFCEGGG 297 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A S + + LVD ++ Y + +V+G G+P ++ F G D+ Sbjct: 298 GLAASLLAADLVDELVAYSAGLVLGAEGLPMVGAMGVDALAAAPRFHLAETTPIGGDLLH 357 Query: 353 EYIGK 357 + Sbjct: 358 RWRRD 362 >gi|295131277|ref|YP_003581940.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK137] gi|291375861|gb|ADD99715.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes SK137] gi|313773159|gb|EFS39125.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL074PA1] gi|313810307|gb|EFS48023.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL083PA1] gi|313830202|gb|EFS67916.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL007PA1] gi|313833124|gb|EFS70838.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL056PA1] gi|314972940|gb|EFT17036.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL053PA1] gi|314975459|gb|EFT19554.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL045PA1] gi|314984254|gb|EFT28346.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL005PA1] gi|315096643|gb|EFT68619.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL038PA1] gi|327325313|gb|EGE67118.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL096PA2] gi|327443828|gb|EGE90482.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL043PA1] gi|327449140|gb|EGE95794.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL043PA2] gi|328761071|gb|EGF74621.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL099PA1] Length = 331 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S IT +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITAEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AVVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|159044799|ref|YP_001533593.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12] gi|157912559|gb|ABV93992.1| riboflavin biosynthesis protein [Dinoroseobacter shibae DFL 12] Length = 365 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 125/362 (34%), Positives = 191/362 (52%), Gaps = 13/362 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA 63 S D R+M AL R +G + NP+V C++V +G V+GRG T GG PHAEV AL +A Sbjct: 2 SDDLRWMQVALTLGRRGLGQSWPNPAVGCVLVAPNGRVVGRGRTQSGGRPHAEVVALAQA 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G ARGATAYVTLEPC+H+G++ PC +I G+ RVV ++DPD RV+G+G L G Sbjct: 62 GAAARGATAYVTLEPCAHHGQTGPCCDALIAAGVGRVVTALEDPDPRVAGQGHSRLRAAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + + + + + +L R R +TLK+A++ D I A S ITG ++ Sbjct: 122 VAVTEGVGRAAAREDQLGFLNRVTLGRPMVTLKLALTLDGRIATARGESQWITGAEARRY 181 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-AL 241 H LRA+ DA+L+G GT DDP LT R G+ P+R++ + + S++ ++ Sbjct: 182 GHALRARHDAVLIGAGTARTDDPTLTVRGVGV-VRQPVRVVASRDLDVPIPSRLSQSVTA 240 Query: 242 LAPVIIVTENDDPVLALAFRK----KNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 APV + + P +A + K + + + ++ LL L RG+T + EGG Sbjct: 241 DAPVWLCHGGEAPAERIARARAAGLKCVEVAAEAEGVSVESLLRTLAQRGLTRVYCEGGG 300 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCL 352 A A + + VD + ++ + VIG G+P + G F + G DV Sbjct: 301 AFAAGLLRAGCVDRLAVFSAGCVIGADGLPGLGDLGVNLLADAPRFRRLGVRQVGGDVLT 360 Query: 353 EY 354 E+ Sbjct: 361 EW 362 >gi|314982172|gb|EFT26265.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA3] gi|315090403|gb|EFT62379.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL110PA4] Length = 331 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 165/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + L+D +I + + V+G G + Sbjct: 237 STLHIPSHDPAEVLDLLCCRGVHRVWLEGGPQLAGAFLAANLIDEVIAHMAPTVLGGGRV 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +F+ G D+ + Sbjct: 297 AIVDPTVATLSQAHHFVIDDVTQLGPDIQIH 327 >gi|329768554|ref|ZP_08260041.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341] gi|328836595|gb|EGF86254.1| riboflavin biosynthesis protein RibD [Gemella haemolysans M341] Length = 356 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 174/363 (47%), Gaps = 16/363 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--E 65 FM+ AL ++ T TNP V +IVKD ++ RG GC HAE A+ E Sbjct: 3 EYFMNLALLEAKRGAKYTHTNPLVGAIIVKDNKIVARGSHLRYGCEHAEKNAISTCKTPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC+H G+ PPC + I++ GI +VVV DP+ VSG+G+++L GI Sbjct: 63 KIFNSTLYVTLEPCNHKGKQPPCTEAILKMGISKVVVAQLDPNPIVSGKGIKFLRDNGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++E E +AY +KR ++ LK A S D + ITG + V Sbjct: 123 VTTGILEKEAYNLNYAYNLFHTQKRPYVVLKQATSLDGKLAFTN-ERTQITGKEVYDFVR 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALL 242 R AILVG TVL D+P+LT + P RIILD + + + K Sbjct: 182 KERDNYQAILVGAKTVLIDNPKLT--GASTSLYPPKRIILDKEGTIFQHKELNLFKDDS- 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + VI+ ++ + L ++ II + +K++LT + G+ S+ VEGG + F Sbjct: 239 SEVIVFSKYKNEDL-----PSHVTIITPNEFTIKEILTEIAKLGIQSVYVEGGPCIHDQF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLC 360 + S D +I Y S ++G S + + + G D+ + ++ C Sbjct: 294 LASGYWDEVISYISPTLLGGSNTSSFNSDRTTNEKITLHDINVTKLGEDIRISGRKESQC 353 Query: 361 LQE 363 LQ+ Sbjct: 354 LQD 356 >gi|170750355|ref|YP_001756615.1| riboflavin biosynthesis protein RibD [Methylobacterium radiotolerans JCM 2831] gi|170656877|gb|ACB25932.1| riboflavin biosynthesis protein RibD [Methylobacterium radiotolerans JCM 2831] Length = 369 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 141/364 (38%), Positives = 189/364 (51%), Gaps = 13/364 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA FM AL R +G T NPSV ++V+ G ++G TA GG PH E AL AG Sbjct: 4 DANFMRLALALGRRGLGTTWPNPSVGAVVVEPGTGRILGTAATAQGGRPHGEPVALAAAG 63 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E ARGAT YVTLEPCSH+GR+PPC I+ GI RVV ++DPD RV+GRG L + G+ Sbjct: 64 EAARGATLYVTLEPCSHHGRTPPCTDAILAAGIARVVSALEDPDPRVAGRGHDLLRRGGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + +M E ++TR R + LK+A ++D AG + ITG ++ V Sbjct: 124 AVETGLMRDEAARDHVGHVTRVTRGRPALHLKLARTRDGFCAAAGPERLRITGPVADGAV 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 HL RA +DAIL+GIGT ADDP LT RL GL SP+R++LD H +LS S + +TA Sbjct: 184 HLWRAHADAILIGIGTARADDPSLTVRLPGLGARSPLRVVLDTHLRLSPASVLARTARDT 243 Query: 244 PVIIVTENDDPVLA-LAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAA 297 P +++T P A A + + DL LT L RG+T L EGG Sbjct: 244 PTLVLTTRSAPAHARRALEALGVAVATVPADPAGGIDLPAALTHLGERGLTRLCSEGGPR 303 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A + + L+D+ L + +G G + L E F R G D + Sbjct: 304 LAEALARADLIDACTLVTGPMALGPAGGLRALGPALAEALSGDRFREAERLQLGPDAAVT 363 Query: 354 YIGK 357 Y Sbjct: 364 YERN 367 >gi|153845346|ref|ZP_01993762.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ3810] gi|149745121|gb|EDM56372.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ3810] Length = 280 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 100/263 (38%), Positives = 146/263 (55%), Gaps = 13/263 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P S D MS AL+ +R + T+ NP+V C+IV+DG+++G G G PHAEV A+ Sbjct: 9 PFSPQDFSMMSRALKLARRGIYTTAPNPNVGCVIVRDGVIVGEGYHHRAGEPHAEVHAMR 68 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG++A GATAYVTLEPCSHYGR+PPCA+ +I+ + RVV ++DP+ +V+GRG+Q L + Sbjct: 69 MAGDKAEGATAYVTLEPCSHYGRTPPCAEGLIKAKVARVVCAMEDPNPKVAGRGIQMLRE 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++E++ ++ I LK+A S D ++ S IT ++ Sbjct: 129 AGVEVQVGLLENDAIELNRGFIKFMQTGMPFIQLKMAASLDGQSALSNGKSQWITSPQAR 188 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFK 229 V RAQS IL TVL D+ L R + L + P R+ILD K Sbjct: 189 QDVQCYRAQSGGILSTSKTVLDDNASLNVRWDDLPQSVQAHYELTEVRQPARVILDRQQK 248 Query: 230 LSLDSKIIKTALLAPVIIVTEND 252 LS D K+ T +I+ +E D Sbjct: 249 LSDDLKLFSTEGE-RIIVSSEGD 270 >gi|160872316|ref|ZP_02062448.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli] gi|159121115|gb|EDP46453.1| riboflavin biosynthesis protein RibD [Rickettsiella grylli] Length = 360 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 156/353 (44%), Gaps = 9/353 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-E 66 +++ AL + G S NP V ++VKD VI +G G PHAEV+A++ Sbjct: 6 RQYLELALSLAEIRRGFCSPNPCVGAILVKDNTVIAKGYHHASGLPHAEVEAIQSVNPVH 65 Query: 67 ARGATAYVTLEPCSHYGR-SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +GAT YVTL+PC H + +PPC II+ GI +V+ DP+ VS L GI Sbjct: 66 VKGATLYVTLQPCCHSAKKTPPCTDLIIKSGIVKVIYGFQDPNPAVSHHTDNLLKHAGIE 125 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + F +Y+ KR T K+A+S D I V +TG ++ H Sbjct: 126 CIQHALPAIDNFYASYVYWWTCKRPFTTAKLALSLDGKIAGKNGKRVQLTGEKAQQFTHH 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R ++DAIL T+ DDP L RL+ P+ I LD H LS SKI ++A + Sbjct: 186 HRKKADAILTTAKTISHDDPLLNSRLDHKIYKKPLYI-LDTHLNLSTTSKIFESA-ASVT 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I + V ++ + I + +L + + G L VE G + + Sbjct: 244 IFHHSSVCKVYQFKEQQPDTRFIPIKHDKNGLNLIAVFDHIGLDGKIDLWVEAGGHLFQA 303 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 I + L+ +Y + +GE + L+K ++ G D C E+ Sbjct: 304 LIQNNLLQHAFIYVAPRWLGENAQTAFHFPNPLKKGI-PMKGITLGRDTCFEF 355 >gi|327332327|gb|EGE74063.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL097PA1] Length = 331 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 163/331 (49%), Gaps = 31/331 (9%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V C+IV + VIG+G G PHAEV+AL +AG++ARGATA VTLEPC H GR+ Sbjct: 24 PNPRVGCVIVAEDRVIGQGWHRGAGTPHAEVEALRQAGDDARGATAVVTLEPCHHTGRTG 83 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQ 145 PC+ +++ GI RVV+ DP+ SG QWL G+ +V ++ E + Q Sbjct: 84 PCSHALVDAGIARVVIAQSDPNPVASGGE-QWLRTHGVEVVTGVLSEEATALNADWTFSQ 142 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + K A S D S ITG +++QV L RA+ AI+VG GT LAD+P Sbjct: 143 IHRRPRVCWKYAASLDGRSAAPDGTSQWITGEQARHQVQLGRARCGAIIVGTGTALADNP 202 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL G+ H P+R+++ +P R + Sbjct: 203 RLTVRLPGVT-HQPLRVVVGMR-------------------------EPPAGCHLRDDSA 236 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++ D ++L +L RGV + +EGG +A +F+ + LVD +I + + V+G G Sbjct: 237 STLHIPSHDPAEVLDLLWCRGVHRVWLEGGPQLAGAFLAANLVDEVIAHMAPTVLGGGRA 296 Query: 326 PS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 + + + G D+ + Sbjct: 297 AVVDPTVATLSQAHHLVIDDVTQLGPDIQIH 327 >gi|145640611|ref|ZP_01796194.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021] gi|145274537|gb|EDK14400.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae 22.4-21] Length = 250 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 140/249 (56%), Gaps = 12/249 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 +AGE ++GATAYVTLEPCSHYGR+PPCA +IE G+ +V+ + DP+ +V+G+GL+ LS Sbjct: 62 AQAGENSKGATAYVTLEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLS 121 Query: 121 QKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 GI ++ + + +L R + + LK+A+S D MA S ITG + Sbjct: 122 DAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHF 228 ++ V +RA+S A+L TV+ADDP L R + E P+R+ILD Sbjct: 182 RSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQH 241 Query: 229 KLSLDSKII 237 ++ K+ Sbjct: 242 RIQPTHKLF 250 >gi|162452084|ref|YP_001614451.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] gi|161162666|emb|CAN93971.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] Length = 381 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 178/363 (49%), Gaps = 17/363 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 P DA M A+ + + S NP V +++ G V+ A G HAE AL Sbjct: 8 PDPELDAAMMRLAIEEAHKAMP--SPNPPVGAVVLNAAGEVVAVAHHARAGEEHAEGLAL 65 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ ARG T YVTLEPC+H GR+PPC ++ GI+RVVV DP+ V G G Q LS Sbjct: 66 AAAGDAARGGTLYVTLEPCNHEGRTPPCVDAVLSAGIKRVVVGAPDPNPSVVGGGAQRLS 125 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ + + +E + + + HI LK+A+S D I S +TG + Sbjct: 126 DAGLAVDVGVAGAEARALIAPWTKFITTGIPHIALKLALSLDGRIATRTGASKWVTGPEA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII 237 + +V LR++ DA+ +GIGT LADDP LT R + L SP+R++ D +L L +++ Sbjct: 186 RAKVQELRSRHDAVAIGIGTALADDPRLTLRESALAPGGRSPIRLVFDTRLRLPLHTRLA 245 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLL 291 +TA P ++T D P A ++ D+ + + +G+ S+L Sbjct: 246 QTAREVPTWVLTGADAPEEAEQVLVDAGCVVLRAPTSAEGRVDVTAAMRLCASQGIVSIL 305 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL-----EEGYLEKNFMCVRRDYF 346 VEGGA +A S + SRL D + + + I++G G P + + + R + Sbjct: 306 VEGGAELAGSLLASRLPDELHAFVAPILLGPRGRPGAVDWAGPDTPGDAPRIVDPRWELC 365 Query: 347 GSD 349 G D Sbjct: 366 GRD 368 >gi|298209105|ref|YP_003717284.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus HTCC2559] gi|83849032|gb|EAP86901.1| riboflavin biosynthesis protein RibD [Croceibacter atlanticus HTCC2559] Length = 333 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 161/352 (45%), Gaps = 35/352 (9%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67 ++ L+ ++ +G T NP V +IV D +IG G G HAEV A+ ++ Sbjct: 7 YIKRCLQLAKKGLGTTYPNPMVGSVIVYDNKIIGEGWHQIAGLAHAEVNAINAVKDKSLL 66 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 + +T YV+LEPCSHYG++PPCA II I VV+ DP +V G+G++ L G I Sbjct: 67 KKSTIYVSLEPCSHYGKTPPCADLIIANNIPNVVIGTVDPFAKVKGQGIKKLLDAGCKIT 126 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQV 183 ++E E + + T KR +I LK A S D + IT +S+ V Sbjct: 127 VGVLEDECQELNKRFFTFHNSKRPYIILKWAESNDAFLAPKTKHKQQPVWITNLVSRQLV 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA+ AILVG TV D+P LT R +P R+++D L ++ A Sbjct: 187 HKWRAEEQAILVGTKTVKDDNPSLTTR--DWNGPNPTRLVIDRKNVLDKSLSVLND--KA 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK-LLTILVGRGVTSLLVEGGAAVAHSF 302 ++ +EN + +L + + + S++VEGGA F Sbjct: 243 ETVVFSENTS-----------------NFNNLPQHICEYCHTNNLQSIIVEGGAQTLQHF 285 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 IN+ L D +++ ++ E G +PL G + + ++ +D Y Sbjct: 286 INANLWDEARVFKGDVMFYE-GTKAPLITGSI------IHKETLQNDTLTIY 330 >gi|304570589|ref|YP_388926.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 373 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 27/369 (7%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ + TS NP V ++VKDG + RG G PHAE++ L +A G Sbjct: 10 FMLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLRDAARRGVN 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 T VTLEPC+H G++PPC+ +++ GIR VVV + DP+ V+ G +L + G+ + Sbjct: 70 PAECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNP-VAQGGANFLRENGVTV 128 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + E + + ++T + + +K+A + D I S I+G S+ +VH Sbjct: 129 ETGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHE 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTAL 241 LR +DA++VG GT AD+P+LTCRL G++ P+ +++ D+ +++ Sbjct: 189 LRRHADAVIVGGGTFRADNPQLTCRLEGIR-RQPLAVVVTSQL---PDAGAPMHLLQQRP 244 Query: 242 LAPV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEG 294 + + +E D + AL R ++ DL L L L EG Sbjct: 245 HETIFWTPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTLCEG 304 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGS 348 G +A S + + + L+ + ++ PL +G G Sbjct: 305 GGMLALSMLEMNVAQELELHMAPKLL-ADAQARPLFDGRTPSTMEQALGLRICNVARSGE 363 Query: 349 DVCLEYIGK 357 DV L + Sbjct: 364 DVILTLRPR 372 >gi|314927222|gb|EFS91053.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL044PA1] Length = 331 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%) Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D R+ M+ AL + NP V C+IV D VIG+G G PHAE++AL + Sbjct: 1 MDQRWDAAMTLALNMAGKS-PCPDPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATA VTLEPC+H GR+ PC+ +++ GI RVV+ DP+ SG QWL Sbjct: 60 AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNPAASGGE-QWLRAH 118 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + E + Q+ +R + K A S D S ITG +++ Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV L R++ AI++G GT LADDP L RL G+ P+R+++ L D + + Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVP-RQPLRVVVGLR-DLPADCHLRDDS- 235 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + D ++L L RG+ + +EGG +A + Sbjct: 236 -APTL----------------------HIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGA 272 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 F+ + LVD +I + + +V+G+G + +F+ G D+ + Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327 >gi|163755421|ref|ZP_02162541.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1] gi|161324841|gb|EDP96170.1| riboflavin biosynthesis protein RibD [Kordia algicida OT-1] Length = 340 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 93/330 (28%), Positives = 163/330 (49%), Gaps = 17/330 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68 M L+ + + NPSV +IV + ++IG G T+ G HAEV A+ ++ + Sbjct: 1 MKRCLQLAANGLPTAMPNPSVGAIIVHNDMIIGEGYTSAYGGNHAEVNAVHSVKDKSLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 AT YV+LEPCSH+G++PPC+ II+ I +VV+ DP +V+G+G++ L G ++ Sbjct: 61 EATMYVSLEPCSHFGKTPPCSDLIIKHQIPKVVIGTIDPFAKVAGKGIEKLQNAGCEVIL 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-----PITGFISKNQ 182 +++ E + T KR ++ LK A +QD I + IT S+ Sbjct: 121 NVLKDECIASNKRFFTFHQHKRPYVILKWAETQDGFIDKIRQENDPVQPNWITNKFSRQL 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH R++ AILVG T + D+P+L R +P+RI+LD ++ + + + Sbjct: 181 VHKWRSEETAILVGTNTAITDNPKLNTR--DWHGKNPVRIVLDRSLRIPENYSLFDQTI- 237 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 I++TE V + I +++ +L + S+++EGG +F Sbjct: 238 -KTIVLTE----VEKASTENLIFETIDFSENLAQQICNVLFQHELQSVIIEGGKQTLQTF 292 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 +++ L D +++ I+ + GI +P G Sbjct: 293 MDANLWDEARVFKGNILF-QQGIKAPKLTG 321 >gi|300727427|ref|ZP_07060836.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14] gi|299775307|gb|EFI71906.1| riboflavin biosynthesis protein RibD [Prevotella bryantii B14] Length = 320 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 162/360 (45%), Gaps = 49/360 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M S D ++M + +R + NPSV +IV D +IG G T+ G PHAEV A Sbjct: 1 MNQKSIDEKYMRRCIAIARNGLNSAKPNPSVGAVIVSADNRIIGEGYTSSYGGPHAEVNA 60 Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AT YV+LEPCSHYG++PPCA ++ G++R V DP V GRG Sbjct: 61 FASVKPEDEHLLADATLYVSLEPCSHYGKTPPCADLVVRKGVKRCVCGCIDPFSEVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 ++ L GI + ++E E K + T + R +I LK A + + +G G + I Sbjct: 121 IKKLRDAGIDVTVGVLEKECKASNKRFFTFNMLHRPYIILKWAQTINGFMG--GKDRLHI 178 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + ++ VH LRA+ DAIL+G GT+ +D P+L R SP RI+L + Sbjct: 179 STPFTQMLVHQLRAECDAILIGRGTLESDHPQLNVR--DWYGPSPERIVLSHNTD----- 231 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 I + D+ +LT L SL+VEG Sbjct: 232 -----------------------------GIPEGFLAFTDIDSVLTHLYQEKKQSLIVEG 262 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GA + +FI + L D I + S I GI SP+ L + VR+ + + Y Sbjct: 263 GAQILQAFIEAGLWDEIRIETSPFTI-TEGIKSPI----LPYSAQLVRQKMYDGNRISWY 317 >gi|313835935|gb|EFS73649.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA2] gi|314970655|gb|EFT14753.1| riboflavin biosynthesis protein RibD [Propionibacterium acnes HL037PA3] gi|328906122|gb|EGG25897.1| riboflavin biosynthesis protein RibD [Propionibacterium sp. P08] Length = 331 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 110/355 (30%), Positives = 169/355 (47%), Gaps = 35/355 (9%) Query: 6 FDARF---MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D R+ M+ AL + NP V C+IV D VIG+G G PHAE++AL + Sbjct: 1 MDQRWDAAMTLALNMAGKS-PCPDPNPRVGCVIVADERVIGQGWHRGAGTPHAEIEALRQ 59 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG+ ARGATA VTLEPC+H GR+ PC+ +++ GI RVV+ DP+ SG QWL Sbjct: 60 AGDGARGATAVVTLEPCNHTGRTGPCSHALLDAGITRVVIAQPDPNPAASGGE-QWLRAH 118 Query: 123 GIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + E + Q+ +R + K A S D S ITG +++ Sbjct: 119 GVEAVTGVLGEKATTLNADWTFSQIHRRPRVCWKYAASLDGRSAAPDGTSQWITGKEARH 178 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 QV L R++ AI++G GT LADDP L RL G+ P+R+++ L D + + Sbjct: 179 QVQLGRSRCGAIVIGTGTALADDPRLVVRLPGVT-RQPLRVVVGLR-DLPADCHLRDDS- 235 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP + + D ++L L RG+ + +EGG +A + Sbjct: 236 -APTL----------------------HIRSHDPVEVLDQLWHRGIHRVWLEGGPRLAGA 272 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLE 353 F+ + LVD +I + + +V+G+G + +F+ G D+ + Sbjct: 273 FLAADLVDEVIAHLAPMVLGDGRAAVIDPTVTSLSQAHHFVIDDVTRLGPDIQIH 327 >gi|88608126|ref|YP_506383.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str. Miyayama] gi|88600295|gb|ABD45763.1| riboflavin biosynthesis protein RibD [Neorickettsia sennetsu str. Miyayama] Length = 372 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 118/330 (35%), Positives = 175/330 (53%), Gaps = 11/330 (3%) Query: 1 MPVSSFDAR---FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEV 57 M S R +M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE Sbjct: 1 MSFSKMHGRIVYYMEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEA 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL+ AG +ARGA Y TLEPC+H+GR+ PC IIE GI+ V + DPD RV+G+G+Q Sbjct: 61 VALKVAGIKARGADLYTTLEPCAHHGRTAPCTDLIIESGIKNVFIGTRDPDTRVNGKGIQ 120 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L + GI + +++ E + Y RQV + + LK A + D I S IT Sbjct: 121 KLQESGIVVTTGILKRECCVSNIGYFYRQVLGKPFVILKTATTLDGKIACFNGKSAWITS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSK 235 + H+LR S ++++ T+ DDP+L+CRL G+++ S ++++LD ++ S + K Sbjct: 181 PAMRRTAHMLRRMSSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEISSPNFK 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 I I+ + + + + DL+ +L L G+ S+LVE G Sbjct: 240 IFNDG-----IVWSFGKRNIFKHKNFFNFEANLNGEMLDLEDVLQQLGTMGINSVLVECG 294 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + SFI L D II +RS V G + Sbjct: 295 GKLFSSFITGDLFDQIIWFRSNKVAGGDAL 324 >gi|188582604|ref|YP_001926049.1| riboflavin biosynthesis protein RibD [Methylobacterium populi BJ001] gi|179346102|gb|ACB81514.1| riboflavin biosynthesis protein RibD [Methylobacterium populi BJ001] Length = 359 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 138/358 (38%), Positives = 191/358 (53%), Gaps = 12/358 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL R ++G T NPSV ++V DG ++G+ VTA GG PHAE AL AGE ARG Sbjct: 1 MRLALALGRRNLGRTWPNPSVGAVVVTPDGRIVGQAVTAPGGRPHAEPLALAMAGEAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 AT YVTLEPCSH+GR+PPC + I G+ RVV ++DPD RV+GRG L GI + Sbjct: 61 ATLYVTLEPCSHHGRTPPCTEATIRSGVARVVTAIEDPDPRVAGRGHAGLRAAGIAVETG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + +R + R + LK+A ++D + + ITG I+ VHL RA Sbjct: 121 LLREEAARDHRGHFSRVTKGRPSLHLKLARTRDGFAAPSTGERLKITGAIADGAVHLWRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 +DAI+VGIGT ADDP LT RL GL E SP+RI+LD +L+ S +++ A P +++ Sbjct: 181 HADAIMVGIGTARADDPSLTVRLPGLTERSPLRIVLDSTLRLNPASHLVRGARDLPTLVL 240 Query: 249 TENDDPVLALAFRKK-NINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T P A + I + DL L L RG+T + EGG A+A + Sbjct: 241 TGRGAPAHARRMLASFGVEIAFVPTDAQGRIDLPAALAALAERGLTRICSEGGPALADAL 300 Query: 303 INSRLVDSIILYRSQIVIGE-GGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 L+D+ L + +GE GG+P+ L + +F V G D Y Sbjct: 301 AAHDLIDACTLITGAVALGEAGGLPALGPNLARRLADGSFATVETRDLGPDTATTYER 358 >gi|163788599|ref|ZP_02183044.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium ALC-1] gi|159875836|gb|EDP69895.1| riboflavin biosynthesis protein RibD [Flavobacteriales bacterium ALC-1] Length = 323 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 157/348 (45%), Gaps = 32/348 (9%) Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73 + + +G T NP V +IV D +I G T+ G HAEV A+ ++ +T Y Sbjct: 2 QIAENGLGFTRPNPMVGAVIVHDKKIISEGFTSTYGGNHAEVNAINSIKDKSLLEKSTLY 61 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 VTLEPCSH+G++PPC+ I++ I V++ D + V+G+G+ L G + ++E+ Sbjct: 62 VTLEPCSHHGKTPPCSDLILKHKIPEVIIGCVDDNPEVAGKGIAKLKASGCKVTVGVLEA 121 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG---CGSVPITGFISKNQVHLLRAQ 189 E K + T +KR +I LK A ++D I V IT S+ VH RA+ Sbjct: 122 ECKTHHKRFFTFHNKKRPYIILKWAETKDGFIAPETKNEKKPVWITNPYSRQLVHKWRAE 181 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AILVG TVL D+P LT R +P R+++D KL+L+ + + Sbjct: 182 EQAILVGTNTVLEDNPSLTVR--DWDGENPTRVVIDRTSKLNLNFNVFSDE-AKTTRLTE 238 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 N D +A + N +L + S+++EGGA +FI+ L D Sbjct: 239 LNIDFNKPIAVQVAN----------------MLYQSNINSIIIEGGAKTLQTFIDEGLWD 282 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 ++ I + G +P G + +D Y+ Sbjct: 283 EARVFIGDIDF-KNGTKAPTLNG------KQITESKIKNDTLRIYVKD 323 >gi|317154507|ref|YP_004122555.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis Aspo-2] gi|316944758|gb|ADU63809.1| riboflavin biosynthesis protein RibD [Desulfovibrio aespoeensis Aspo-2] Length = 377 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 104/365 (28%), Positives = 165/365 (45%), Gaps = 19/365 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ A+ +R G + NP V ++V ++ G G HAE + L +A G Sbjct: 14 MARAIELARLGRGAVAPNPCVGAVLVDGDRIVAEGWHMRYGGLHAERECLVDARSKGVTP 73 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG T +VTLEPC+H+G++PPC Q +IE G+ RVVV DP+ V+ G++ L+ GI V+ Sbjct: 74 RGLTMFVTLEPCNHHGKTPPCTQALIEEGVARVVVGTRDPNP-VAAGGIERLTAAGIEVE 132 Query: 128 RMM-ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ESE + + +L Q + +K+A + D I P++ S +VH L Sbjct: 133 VGALESECRDLIADFLVWQNSHSTFNIIKMAATLDGKIASRLRRPEPVSCAESFARVHAL 192 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAP 244 R++ DAI+VG T ADDP LTCRL L + P +++ ++ Sbjct: 193 RSRVDAIIVGGSTFRADDPSLTCRLTTLPDGFVQPYGVVITSRLPDDPARHVLTRTRPER 252 Query: 245 VIIVTENDDP--VLALAFRKKNINIIYCD----CRDLKKLLTIL-VGRGVTSLLVEGGAA 297 I +T + A R+ ++ +L L L G + L EGG Sbjct: 253 TIFMTTDTSARSQEADRLREGGTSVWPLPGPPGGLNLSLGLERLRYDLGCHTTLCEGGGQ 312 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352 +A F+ L D I+ + + ++G+ G PS N+ + GSD+ L Sbjct: 313 LAMQFVGQGLGDEIVHFVAPRILGDEGAPSAYSGRQGVTMAQTLNYRIIDMHPSGSDIML 372 Query: 353 EYIGK 357 + Sbjct: 373 TLRPR 377 >gi|88803651|ref|ZP_01119175.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P] gi|88780384|gb|EAR11565.1| riboflavin biosynthesis protein ribD [Polaribacter irgensii 23-P] Length = 354 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 101/358 (28%), Positives = 181/358 (50%), Gaps = 22/358 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--GE 65 +++ L+ ++ +G T NPSV +IV G+++G G TA G HAEV A+ + Sbjct: 5 EQYIQRCLQIAKNGIGTTRPNPSVGAVIVCKGVIVGEGFTAAYGGNHAEVNAVNSVEHKK 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 +T YVTLEPCSH+G++PPCA II+ I+RVV+ D + V+G+G++ L G++ Sbjct: 65 LLVESTLYVTLEPCSHFGKTPPCADLIIKYNIKRVVIGCVDTNSLVAGQGIERLKSAGVV 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG---SVPITGFISKN 181 V ++E+E + + Q +KR +I LK A ++D + I+ S+ Sbjct: 125 VTVGVLEAECRKHHKRFFVVQEKKRPYIILKWAETKDGFVAPLSKDAVAPKFISNRYSQQ 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR+Q AILVG TVL D+P+L R ++P+R++LD + + + Sbjct: 185 LVHKLRSQEHAILVGKNTVLEDNPKLNVR--SWSGNNPIRVVLDSALGIPESAHVFD-GS 241 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL-----KKLLTILVGRGVTSLLVEGGA 296 + ++I + + + + D +++ +L+ V SL+VEGG Sbjct: 242 ITTIVITGKIHGHEEVKTKKYAFNKNLIFEPIDFSKNVAEQICVVLLKHQVQSLIVEGGT 301 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +FI+ L D +++ G+ + ++ L+KN+ ++++ D+ +Y Sbjct: 302 QTLATFISENLWDEALVFV-----GDHSFDAGVKAPRLDKNY---KKEHVLEDLIKKY 351 >gi|300775167|ref|ZP_07085029.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC 35910] gi|300505907|gb|EFK37043.1| riboflavin biosynthesis protein RibD [Chryseobacterium gleum ATCC 35910] Length = 341 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 168/357 (47%), Gaps = 21/357 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D ++ + ++ +G T NP V +IV +G +IG G G HAE+ A+ Sbjct: 2 NNDELYIKRCIELAQKALGKTYPNPLVGSVIVHNGEIIGEGYHHKAGENHAEINAINSVK 61 Query: 65 EE--ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 + +T YV+LEPC+HYG++PPCA I E G ++VV+ D +V+G+G + + + Sbjct: 62 NKDLIPESTIYVSLEPCAHYGKTPPCALKIRELGFKKVVIGAMDSHDKVNGKGKKIIQEA 121 Query: 123 GII-VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI V ++E E + T +KR +I LK A S D + ++ + Sbjct: 122 GIEAVSGILEKECIELNKRFFTYHEKKRPYIILKWAESGDGFLD-KDFKPTAVSNTLVNQ 180 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LRA AILVG T L D+P LT R + +P+RI++D K+ I Sbjct: 181 FVHQLRADEHAILVGTQTALNDNPSLTVR--NAEGVNPVRILIDFDLKVPAHFNIYNND- 237 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRD-LKKLLTILVGRGVTSLLVEGGAAVAH 300 A +++ + +I I + D L +L+ L + S+++EGG Sbjct: 238 -AKTLVLNS------VKEGIENHIQFIKINKDDFLPELMKALYKEQIQSIIIEGGRFTLQ 290 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 FI++ L D I+ +++ + E G +P E N+ R + F + Y K Sbjct: 291 QFIDANLWDEAIVIKNENLKLENGTKAP------EFNYTADRLENFRDNTVSFYRQK 341 >gi|154250091|ref|YP_001410916.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum Rt17-B1] gi|154154027|gb|ABS61259.1| riboflavin biosynthesis protein RibD [Fervidobacterium nodosum Rt17-B1] Length = 365 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 101/321 (31%), Positives = 158/321 (49%), Gaps = 12/321 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL---EEAG 64 RFM A+ ++ +G + NP V +IVKDG ++ G Y G HAE A+ AG Sbjct: 11 ERFMKLAIVIAKKGIGFVNPNPPVGAVIVKDGKILSMGYHKYYGGYHAERDAILSALNAG 70 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + G+T YVTLEPC HYG++PPC II+ GI+ V + DP+ +SG G + L + G+ Sbjct: 71 IDISGSTMYVTLEPCDHYGKTPPCTDLIIQSGIKEVYIACTDPNP-ISGNGAEKLRKNGV 129 Query: 125 IVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V ++E E + + ++TLK A + D I S IT + + V Sbjct: 130 DVHIGLLEEEARELAKFFFKSVETGIPYVTLKYAATLDGKIADVNGNSKWITDEL-RKVV 188 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H LR++ A+LVG GTV+ D+P L R ++ +P++++LD + K + Sbjct: 189 HKLRSEHMAVLVGAGTVIKDNPTLNVRFLKSKKRNPIKVVLDKRGVIFEKIKDLNVFQGE 248 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG-VTSLLVEGGAAVAHSF 302 VI+ TE V A N + + + ++L L V S+LVEGG+ + F Sbjct: 249 KVIVFTEKQ--VSAPELNGVN-GVKIFNVLEPIEILKTLYKEERVDSVLVEGGSEIFSQF 305 Query: 303 INSRLVDSIILYRSQIVIGEG 323 + D I + +G+G Sbjct: 306 L--PFADEIYGFYGLKALGKG 324 >gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6] gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6] Length = 416 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 114/367 (31%), Positives = 167/367 (45%), Gaps = 36/367 (9%) Query: 19 RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA---LEEAGEEARGATAYV 74 GLT NP V C+IV G ++G G T G PHAEV A AG GATAYV Sbjct: 37 EQGFGLTEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYV 96 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESE 133 TLEPC+H+GR+PPCA +IE G++RVV + DP V+G+GL L+ GI + +M Sbjct: 97 TLEPCAHHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEA 156 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + +R + +R + +K+A S D + S ITG ++ H R ++ A+ Sbjct: 157 ATAINIGFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAV 216 Query: 194 LVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 L GIGTVL DDP L R + PMR+++D + + ++++ A V++ T D+ Sbjct: 217 LTGIGTVLDDDPRLDVR-HVPTPRQPMRVVVDAPLRTPVTARLL--APPGEVLVYTSADE 273 Query: 254 PVLALAFRKKN--------------------INIIYCDC-----RDLKKLLTILVGRGVT 288 A + + + DL +L L RGV Sbjct: 274 TAQAAWLAEVQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVN 333 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDY 345 L VE G + S + LVD ++Y + ++G G PLE Sbjct: 334 ELHVEAGHRLNGSLLREGLVDEFLVYLAPKLLGLGREMWSWGPLESLDQAIELEWGDVQS 393 Query: 346 FGSDVCL 352 G D+ L Sbjct: 394 VGGDLRL 400 >gi|294635299|ref|ZP_06713797.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC 23685] gi|291091308|gb|EFE23869.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda ATCC 23685] Length = 319 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 154/319 (48%), Gaps = 18/319 (5%) Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 PHAEV AL AGE ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVV + DP+ V+ Sbjct: 1 PHAEVHALRMAGERARGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPHVA 60 Query: 113 GRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS 171 GRGL L Q GI + +M +E + +L R ++ LK+ S D MA S Sbjct: 61 GRGLYRLQQAGIEVRHGLMLAEAEAVNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGES 120 Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPM 220 IT ++ V RAQS AIL TVLADDP LT R + L + P+ Sbjct: 121 QWITSAAARADVQRYRAQSSAILSSSATVLADDPSLTVRWDELDDETQRHYPREWLRQPL 180 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 R+I+D H +++ ++I ++ E D + + DL L+ Sbjct: 181 RVIVDSHNRVTPQHRLISQPGE--TLLARETPDTQAWPSAVSQLSLPRNGAGLDLVLLMM 238 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEK 336 L R + S+ VE G +A + + + +VD +I+Y + ++G+ LE Sbjct: 239 QLGKRQINSVWVEAGPRLAGALLQAGVVDELIVYLAPKLLGDAARGLCHLPGLERLGDAP 298 Query: 337 NFMCVRRDYFGSDVCLEYI 355 + G D+ L Sbjct: 299 SLAFSEVTRVGDDLRLTLR 317 >gi|297195567|ref|ZP_06912965.1| riboflavin biosynthesis protein RibD [Streptomyces pristinaespiralis ATCC 25486] gi|197721390|gb|EDY65298.1| riboflavin biosynthesis protein RibD [Streptomyces pristinaespiralis ATCC 25486] Length = 363 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 174/357 (48%), Gaps = 12/357 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ +A M A+ + +G TS NP V C+I G V+G G G PHAE+ AL Sbjct: 3 TAAEADAMRRAITLAARGLGSTSPNPVVGCVITDASGHVVGEGFHQRAGGPHAEIHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC+H GR+ PCAQ ++E G+ RVV V DP+ + G L Sbjct: 63 AGVLARGGTAYVTLEPCNHTGRTGPCAQALVEAGVARVVYAVADPN-GEAAGGADTLRAA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E +LT R H+T K A + D + A S I+ S+ Sbjct: 122 GIEVEQGLLAEEAAAGNAGWLTSVRLGRPHVTWKYAATLDGRVAAADGTSRWISSPESRA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTA 240 VH LRA++DA++VG GT ADDP L R P+R+++D + ++++ A Sbjct: 182 DVHRLRAEADAVVVGSGTARADDPHLAVR-GVAGATQPLRVVIDTEAVAVKPGARVLDDA 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + + A + D+ LL L RGV S+L+EGG +A Sbjct: 241 APTAVAVAEDVLPDATAHIADVWRLPRASGGGLDVAALLATLHTRGVRSVLLEGGPTLAG 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 +F+ + VD +I Y + +++G G P+ L + + G+D+ + Sbjct: 301 AFVAAGAVDRVIGYLAPVLLGAG--PAALADAGITTITDALRLDVTETVRIGTDLRV 355 >gi|300812786|ref|ZP_07093184.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496238|gb|EFK31362.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 351 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 171/359 (47%), Gaps = 13/359 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D +M A+ +R T NP V +VKDG V+ G + G HAE + + Sbjct: 2 ASDEEYMRLAIAAARKAGNATWRNPRVGSCLVKDGKVLATGFHQHYGGFHAERDTISKLT 61 Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ +T YVTLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G Sbjct: 62 PEQLSNSTIYVTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + + ++ E Y ++TLK A++ D+M+ ITG + + Sbjct: 122 LEVSTGLLAKEASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKK-GERTAITGAEAWTR 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTA 240 VH RA A+L+G T + DDP L + + H P+R++LD +L LD ++ Sbjct: 181 VHQERAGYQAVLIGSETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSD- 237 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 A I+TEN P K + I + + IL +GV S+ EGGA + Sbjct: 238 KRAETWILTEN--PDFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQE 295 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 S + + LV+ +I Y + +G G + E + V+ + G DV + K++ Sbjct: 296 SLLAAGLVNDVISYVAPRFLGRGTEAAVAAEAL---DLKDVQTEQVGDDVRIYGRIKDV 351 >gi|326780548|ref|ZP_08239813.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus XylebKG-1] gi|326660881|gb|EGE45727.1| riboflavin biosynthesis protein RibD [Streptomyces cf. griseus XylebKG-1] Length = 366 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 117/363 (32%), Positives = 176/363 (48%), Gaps = 16/363 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAITLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G L Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVMWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240 VH LRA++DA+LVG GT DDP+L R P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVR-GIDGATQPLRVVVDTNATAVKPGARVLD-- 238 Query: 241 LLAPVIIVTENDDPVLALAFRK--KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 AP ++ +D P L + DL LL L RGV S+L+EGG + Sbjct: 239 ATAPTLVAVADDAPAGHLPEPAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTL 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 A +F+ + VD ++ Y + +++G G P+ L + + G D+ + Sbjct: 299 AGAFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLDVTETVPIGPDLRIT 356 Query: 354 YIG 356 + Sbjct: 357 AVP 359 >gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens T118] gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodoferax ferrireducens T118] Length = 377 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 161/344 (46%), Gaps = 19/344 (5%) Query: 27 TNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHY 82 NP V C++ +G+G T G HAE+ AL +A G GATAYVTLEPCSH+ Sbjct: 25 PNPRVGCVMTDCRENTLGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSHH 84 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-----KIF 137 GR+ PC +I GI++VV + DP+ VSG+G + L G+ V+ M + + Sbjct: 85 GRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVEVMPADDPLAIASREL 144 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + +R + K + LK+A S D + S IT ++ H RA++ A+L GI Sbjct: 145 NIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTGI 204 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 GTVL D+P L RL P +I+D + LD+ + + + +N+ A Sbjct: 205 GTVLTDNPRLDVRLVD-TPRQPHLVIVDSRLETPLDAALFTPGRVIYLYAAVQNEAKKAA 263 Query: 258 LAFRKK------NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 L R + + DL +L L R + L VE G + SFI LVD Sbjct: 264 LETRGATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVDEY 323 Query: 312 ILYRSQIVIG-EGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCL 352 ++Y + ++IG G+ P+ + N + G D+ + Sbjct: 324 LVYLAPMLIGLGSGMANFGPITQLEDAVNLRFHSIEPVGDDLRI 367 >gi|220925141|ref|YP_002500443.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS 2060] gi|219949748|gb|ACL60140.1| riboflavin biosynthesis protein RibD [Methylobacterium nodulans ORS 2060] Length = 388 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 131/365 (35%), Positives = 184/365 (50%), Gaps = 13/365 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58 S+ D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE Sbjct: 8 QSALDRRYMRLALALGRRHLGETWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERI 67 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL AGE ARGAT YVTLEPCSH+GR+ PCA ++E GI RVV + DPD RV+GRG Sbjct: 68 ALAAAGEAARGATLYVTLEPCSHHGRTSPCADAVVEAGIARVVSAMADPDPRVAGRGHGR 127 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 LS GI V + H +V + G G + ITG + Sbjct: 128 LSAAGIAVTVGTLGQEAARDHLGHVTRVTAGRPAIDLKLARTPDGFAAGGTGRLIITGPL 187 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + ++HL+RA SDAI+VG+ TVLADDPELT RL GL + SP+R++LDP + S++++ Sbjct: 188 ANARIHLMRAHSDAIMVGVETVLADDPELTVRLPGLGDRSPVRVVLDPALRTPPQSRLLR 247 Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLV 292 T+ P +I+ P A A R ++ L+ L L RG T + Sbjct: 248 TSDRVPTLILCGPAAPPEAERAIRAAGADVARMPVDPDGRLQLRAALHGLGERGFTRVFC 307 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSD 349 EGG +A++ L+D+ ++ + G+P+ L + F G D Sbjct: 308 EGGPTLANALARHGLIDTCLIVTGARPLDRAGLPAIGPDLADLLASGAFGLAEETRAGPD 367 Query: 350 VCLEY 354 + Y Sbjct: 368 LFTSY 372 >gi|224025262|ref|ZP_03643628.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM 18228] gi|224018498|gb|EEF76496.1| hypothetical protein BACCOPRO_01999 [Bacteroides coprophilus DSM 18228] Length = 306 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 161/302 (53%), Gaps = 15/302 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +++ ++ +R + + NP V ++V +IG G A G HAEV AL +E Sbjct: 4 DEKYIRRCIQLARNGLCNAAPNPMVGAVVVYRDRIIGEGYHARCGEGHAEVNALRSVRDE 63 Query: 67 --ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + AT YV+LEPCSHYG++PPCA I+ GI RVVV DP V+GRG++ L + GI Sbjct: 64 SLLKEATLYVSLEPCSHYGKTPPCADLIVSKGIPRVVVGCMDPFPLVAGRGIRKLEEAGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--ITGFISKN 181 + ++E E + + ++T + KR +ITLK A S D I P ++ ++ Sbjct: 124 DVTVGVLEEECRELIRRFVTLNIRKRPYITLKWAQSADGFIDRLRQEGSPAVLSTPLTSM 183 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH +RA+ AILVG T L D+P LT R +P+R+++D L + K+ Sbjct: 184 YVHKMRAEYKAILVGRRTALLDNPSLTTR--NWYGPNPLRLVIDRKLTLPRELKLFD--G 239 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 AP ++ TE V A R+ N++ D L +++ +L R + SLLVEGG ++ Sbjct: 240 TAPTLVFTEE---VPAECLRQTNVDYQVLDFSQDILPQIMQVLYERKIQSLLVEGG-RLS 295 Query: 300 HS 301 S Sbjct: 296 AS 297 >gi|257055601|ref|YP_003133433.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomonospora viridis DSM 43017] gi|256585473|gb|ACU96606.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomonospora viridis DSM 43017] Length = 349 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 173/368 (47%), Gaps = 38/368 (10%) Query: 1 MPVSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHA 55 M S+ R M AL S G TS NP V +I+ +G +G G T PHA Sbjct: 1 MSASAVTERVVREAMEVALALSAGVRGNTSPNPPVGAVILDAEGRRVGTGATQPPPGPHA 60 Query: 56 EVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 EV AL EAGE ARG TA VTLEPCSH+GR+PPC Q +++ G+ V V DP + G Sbjct: 61 EVVALREAGERARGGTAVVTLEPCSHHGRTPPCTQALLDAGVAAVRYAVADPHP-AASGG 119 Query: 116 LQWLSQKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 + L G+ V + +E L A+L R+ R H+T K A S D + A S Sbjct: 120 AERLRAAGVDVAGGVLAEEVASGPLRAWLHRERTGRPHVTWKYAASLDGRVAAADGTSRW 179 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLS 231 I+G S+ +VH LRA DAI+VG GTVL DDP LT R L P+R+++ + Sbjct: 180 ISGPTSRAEVHALRAAVDAIVVGTGTVLTDDPWLTVRTPDGELAPRQPLRVVVGTRG-IP 238 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 ++++ + + D ++L +L RGV +L Sbjct: 239 EGARVLDSTAET------------------------VRIASHDPDEVLALLSERGVVDVL 274 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGS 348 +EGG +A +F+ + VD II Y + ++G G P+ + ++ G Sbjct: 275 LEGGPTLAGAFVAAGRVDRIIAYVAPTLLGAGPAALGPAGVSTITQAHHWRVEGATMCGE 334 Query: 349 DVCLEYIG 356 DV + + Sbjct: 335 DVRISAVP 342 >gi|323436092|ref|ZP_08088234.1| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134] gi|321496407|gb|EAQ38739.2| riboflavin biosynthesis protein RibD [Dokdonia donghaensis MED134] Length = 346 Score = 276 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 101/357 (28%), Positives = 159/357 (44%), Gaps = 39/357 (10%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG----E 65 ++ + ++ + NPSV ++V + +I G T+ G PHAEV + A E Sbjct: 20 YIKRCIALAKNGLPAAMPNPSVGAVLVHNNTIIAEGYTSAYGGPHAEVNCIAFAKANTPE 79 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YV+LEPCSH+G++PPCA +I+ GI+RVV+ DP +V+G G++ L Q G+ Sbjct: 80 LIAKSTLYVSLEPCSHWGKTPPCADLVIDSGIKRVVIGTIDPFAKVAGAGIKKLMQAGVD 139 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKN 181 + ++E E + + T EKR I LK A + + I A IT S+ Sbjct: 140 VTVGVLEKECQEVNKRFFTYHNEKRPFIILKWAETANGFIAPASRDKQEPVWITNSHSRQ 199 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 VH LR++ ILVG TV+ D+P LT R +P RI++D L I Sbjct: 200 LVHKLRSKEMGILVGGKTVIEDNPTLTTR--DWHGSNPTRIVIDTQGNLPKKLHIFNNE- 256 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 AP I++ ++ D K + L + S++VEGGAA Sbjct: 257 -APTIVLKDS----------------------DPKSICKELFEHNIQSVIVEGGAATLQR 293 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 FI++ L D + + G + ++ F + D Y + Sbjct: 294 FIDAALWDE-----ASVFTGLTNFNAGIKAPKKTSQFTLQSSQHVQGDRLDIYTRSD 345 >gi|78219882|gb|ABB39231.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 363 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 99/368 (26%), Positives = 165/368 (44%), Gaps = 27/368 (7%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M A+ + TS NP V ++VKDG + RG G PHAE++ L +A G Sbjct: 1 MLEAVALAEKGRWATSPNPCVGAVLVKDGQTVARGWHTAYGKPHAEIECLRDAARRGVNP 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 T VTLEPC+H G++PPC+ +++ GIR VVV + DP+ V+ G +L + G+ + Sbjct: 61 AECTLVVTLEPCNHTGKTPPCSIAVLQAGIRHVVVGMMDPNP-VAQGGANFLRENGVTVE 119 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E + + ++T + + +K+A + D I S I+G S+ +VH L Sbjct: 120 TGVCRQECEDVVDDFITWKKTPLPYTIIKLASTLDGRIATRTGHSRWISGEESRRRVHEL 179 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS----KIIKTALL 242 R +DA++VG GT AD+P+LTCRL G++ P+ +++ D+ +++ Sbjct: 180 RRHADAVIVGGGTFRADNPQLTCRLEGIR-RQPLAVVVTSQL---PDAGAPMHLLQQRPH 235 Query: 243 APV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGG 295 + + +E D + AL R ++ DL L L L EGG Sbjct: 236 ETIFWTPRAVAASEKADALRALGVRVTGLDRNCKGRLDLHTALAGLRSEYDCYHTLCEGG 295 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSD 349 +A S + + + L+ + ++ PL +G G D Sbjct: 296 GMLALSMLEMNVAQELELHMAPKLL-ADAQARPLFDGRTPSTMEQALGLRICNVARSGED 354 Query: 350 VCLEYIGK 357 V L + Sbjct: 355 VILTLRPR 362 >gi|294054578|ref|YP_003548236.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis DSM 45221] gi|293613911|gb|ADE54066.1| riboflavin biosynthesis protein RibD [Coraliomargarita akajimensis DSM 45221] Length = 369 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 153/366 (41%), Gaps = 14/366 (3%) Query: 1 MPVS-SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M S S +M+ AL+ + G T NP V +IV+DG ++ G G PHAE++A Sbjct: 1 MSASHSEHEFYMARALKLAAQGWGTTHPNPMVGAVIVEDGAIVAEGWHTAAGQPHAEIEA 60 Query: 60 LEEAGEE-ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 L G A A YVTLEPCS GR+ C I+ GI+ VV+ DP+ +G GL Sbjct: 61 LAALGRAPASDAVLYVTLEPCSTSGRTGACTDAILRAGIQNVVIGATDPNPDHAGNGLDL 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L + G+ + ++E E + V + I KIA + D + S +TG Sbjct: 121 LREAGVHVQAGILEQECDDLNLIFNHWIVRQSPLIAAKIATTLDGKFAASNGQSKWVTGP 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL---DS 234 +++ V R AI V T +AD+P LT RL P+R + D + D Sbjct: 181 LARADVMHWRRYFPAIAVTAQTAVADNPSLTSRLEDGT-WCPLRFVFDRNLATLERLGDL 239 Query: 235 KIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLV 292 ++ + I+ +E DP L + D D+ + + + Sbjct: 240 QLYNDSFAENTIVCCSEASDPKPLLDVGIRCWQFPVVDDHLDIDAFRRRCFEESIAGVYI 299 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVI---GEGGIPSP--LEEGYLEKNFMCVRRDYFG 347 E G + + I +R VD + Y S + G GI S E N +R F Sbjct: 300 EAGPGLMTAMIEARFVDYVFHYLSPRYMSDSGSTGIGSARETESMGETLNLEQIRYANFE 359 Query: 348 SDVCLE 353 D+ + Sbjct: 360 PDLLIR 365 >gi|298529749|ref|ZP_07017152.1| riboflavin biosynthesis protein RibD [Desulfonatronospira thiodismutans ASO3-1] gi|298511185|gb|EFI35088.1| riboflavin biosynthesis protein RibD [Desulfonatronospira thiodismutans ASO3-1] Length = 371 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 164/372 (44%), Gaps = 21/372 (5%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M S FM AL +R G T+ NP V L+ ++G+G G HAEV+A+ Sbjct: 1 MNQSE----FMLKALGLARQAKGFTAPNPCVGALVTCGDRIMGKGWHRAPGENHAEVEAI 56 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 E A G + YVTLEPC+H+GR+PPC +I+ GI +++ DP+ +V G G + Sbjct: 57 ENARENGADLSSCRMYVTLEPCNHHGRTPPCTAAVIQAGIPEIIIGARDPNSQVQGGGAE 116 Query: 118 WLSQKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 +L G+ V +E + + L + Q R ++ LK A + D I S +T Sbjct: 117 FLRNHGLRVTVGVEEQKCLDLIADFSLWQNSGRPYVYLKTASTLDGRIATRTGHSRWVTS 176 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 ++ VH LR+ A+LVG T D+P LTCR+ ++ + P ++L Sbjct: 177 ANARQMVHQLRSIVGAVLVGGNTFYQDNPALTCRIQEVK-NQPWAVVLTSRLPDPDQDFY 235 Query: 237 IKTALLAPVIIVTENDDPV--LALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTS 289 + + I T+ + A + ++ D DLK L +L G+ Sbjct: 236 LLQKRASRTIFWTDKNSAASPRAAGLEARGCRVMGLDAEGPGLDLKLGLEMLRRETGIYY 295 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-GIPSP----LEEGYLEKNFMCVRRD 344 LL EGG +A S + L D + + + ++G+ +P +E +F Sbjct: 296 LLCEGGGQLASSLLQQGLADEVWAFVALKILGDSLAVPVTSGREVELMDQTLDFRPGEIL 355 Query: 345 YFGSDVCLEYIG 356 G ++ L Sbjct: 356 NLGPEILLRLFP 367 >gi|254796854|ref|YP_003081691.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str. Illinois] gi|254590091|gb|ACT69453.1| riboflavin biosynthesis protein RibD [Neorickettsia risticii str. Illinois] Length = 359 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 117/317 (36%), Positives = 171/317 (53%), Gaps = 8/317 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AA+ S + G T+ NPSV C+IVKD V+G+GVT G PHAE AL+ AG +ARGA Sbjct: 1 MEAAVNASLFGQGFTADNPSVGCIIVKDDEVVGKGVTGINGSPHAEAVALKVAGIKARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 Y TLEPC+H+GR+ PC II GI+ V + DPD RV+G+G+Q L + GI + + Sbjct: 61 DLYTTLEPCAHHGRTAPCTDLIIGSGIKNVFIGTRDPDTRVNGKGIQKLRESGIVVTTGI 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ E I Y RQV + +TLK A + D I S IT + VH+LR Sbjct: 121 LKRECCISNIGYFYRQVFGKPFVTLKTATTLDGKIACFNGKSTWITSPALRRTVHMLRRI 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL-SLDSKIIKTALLAPVIIV 248 S ++++ T+ DDP+L+CRL G+++ S ++++LD ++ S + KI I+ Sbjct: 181 SSSVMISYSTLKHDDPQLSCRLPGVKKES-IKVVLDTRGEISSPNFKIFNDG-----IVW 234 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + + + DL +L L G+ S+LVE G + SF+N L Sbjct: 235 SFGKKNTFKHKNFFNFEANLNGEKLDLGDILQQLGTMGINSVLVECGGKLFSSFVNGNLF 294 Query: 309 DSIILYRSQIVIGEGGI 325 D II +RS V G + Sbjct: 295 DQIIWFRSNKVAGGDAL 311 >gi|225159038|ref|ZP_03725347.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2] gi|224802351|gb|EEG20614.1| riboflavin biosynthesis protein RibD [Opitutaceae bacterium TAV2] Length = 388 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 147/359 (40%), Gaps = 15/359 (4%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 FM AL +R G T NP V +IV+DG V+ G A G PHAE AL G + Sbjct: 11 FMWQALALARRAWGNTHPNPMVGAIIVEDGAVVAEGWHARDGGPHAERVALTALGRAPKP 70 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT YVTLEPCS +GR+ C IIE GIRRVVV DP+ +G G L G+ ++ Sbjct: 71 GATLYVTLEPCSTHGRTGACCDAIIEAGIRRVVVGATDPNPDHAGAGYARLRAAGVEVIT 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E E + + KIA + D I S ITG ++ VH R Sbjct: 131 GVRERECADLNLIFNQWITTGLPLLAGKIATTLDGKIACRTGHSKWITGEAARADVHRWR 190 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL---SLDSKIIKTALLAP 244 AI VG TVLADDP LT R E P R + D + ++ Sbjct: 191 RLFPAIAVGAMTVLADDPRLTARPADGGEWCPWRFVFDGLLRTLGGPRLPQVYTDGHRER 250 Query: 245 VIIVTENDDP-VLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVA 299 I+VT R+ + + D + +T + EGGA + Sbjct: 251 TIVVTTPHGGMGYVRKLREMGVAVWVLDAPTQRVNFADFRRRCAEEKITGVYFEGGAQLL 310 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVR-----RDYFGSDVCLE 353 + SR +D + YR+ ++ + S E VR + G D + Sbjct: 311 SELLRSRELDYLFNYRAPLLFADDKARSVFTGLRTESVQQAVRIQGATTEVHGEDSLVR 369 >gi|260063122|ref|YP_003196202.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata HTCC2501] gi|88784691|gb|EAR15861.1| riboflavin biosynthesis protein RibD [Robiginitalea biformata HTCC2501] Length = 350 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 113/357 (31%), Positives = 171/357 (47%), Gaps = 22/357 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M ++ R +G ++ NP V L+ +IG G T+ G PHAEV A+ + Sbjct: 5 EKYMLRCIQIGRNALGRSAPNPMVGALLTHGDTIIGSGYTSAFGGPHAEVNAIRSVADPG 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC H+G++PPC IIE GIRRVVV + DP +V+G+G+ L + G Sbjct: 65 KLPDSTLYVTLEPCCHHGKTPPCTDRIIESGIRRVVVGLPDPHDKVAGQGIAQLREAGCQ 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM------AGCGSVPITGFI 178 + + + +LT + R +I LK A S D + G ITG Sbjct: 125 VEVGVAADACREHHKRFLTLHEKGRPYIVLKWAQSPDGFLAPDPEVRGESTGPWWITGRE 184 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 S+ VH R Q AILVG T ADDP+LT R P+R++LDP + +++ Sbjct: 185 SRQLVHKWRTQESAILVGWRTAAADDPQLTSR--DWAGKDPLRVLLDPSGRAPEGLRLLD 242 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + + ++ P + R +NI + L+ L L RGV S+LVEGGA Sbjct: 243 -GKVPTLRVLHTGQQP--TGSARVENIFLEPGPGF-LRALCRELRERGVLSILVEGGAHT 298 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 SF+++ L D ++ + GG+ +P G L N G+D + Sbjct: 299 LGSFLSAGLWDEARVFTGPRPL-NGGLRAPALSGRLVANTAS------GADTLTLWR 348 >gi|152964097|ref|YP_001359881.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans SRS30216] gi|151358614|gb|ABS01617.1| riboflavin biosynthesis protein RibD [Kineococcus radiotolerans SRS30216] Length = 338 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 168/354 (47%), Gaps = 34/354 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M+ A+ + +G TS NP V C+++ G V G G G PHAEV AL AG+ Sbjct: 3 DREVMARAVALAARGLGTTSPNPVVGCVVLDAAGEVAGEGWHERAGGPHAEVNALAAAGD 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARG TAYVTLEPC+H GR+ PC Q ++ GI RVV V DP G + + + Sbjct: 63 RARGGTAYVTLEPCNHTGRTGPCVQALLRAGIARVVFAVADPGALAGGGARELRAAGVEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V ++ E + A+LT R H+ K A + D A S I+ S+ QVH Sbjct: 123 VAGVLAEEAERVNEAWLTSARRHRPHVLWKFAATLDGRSAAADGTSRWISSAASRGQVHD 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR + DA++ G GTVLADDP LT R L P+R+++D ++ + ++ + A Sbjct: 183 LRRRVDAVVAGSGTVLADDPRLTAREPDGTLSARQPLRVVVDRRGRVPATAAVLDGS--A 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 P ++ T LL L RGV S+L+EGG +A +F+ Sbjct: 241 PTLVSTAA----------------------TPADLLAELHERGVVSVLLEGGPTLAGAFL 278 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCL 352 + LVD + Y + ++G G P+ L + V D G DV L Sbjct: 279 AAGLVDRVTAYVAPTLLGAG--PAALAGTGITTIADAVGLDVDDVSVVGGDVRL 330 >gi|294900049|ref|XP_002776874.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC 50983] gi|239884075|gb|EER08690.1| riboflavin-specific deaminase, putative [Perkinsus marinus ATCC 50983] Length = 332 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 118/309 (38%), Positives = 165/309 (53%), Gaps = 3/309 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI-GRGVTAYGGCPHAEVQALEEAGE 65 D FM AL S T NP V C++V+ G V+ G+G G PHAEV AL + + Sbjct: 11 DEDFMRMALVESEEGRMTTPPNPWVGCILVQHGQVVVGKGHHVRKGGPHAEVNALRDMIQ 70 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 TAYVTLEPCSHYG +PPC + +IE G+ RVVV V+DPD +VSGRG+Q + + G+ Sbjct: 71 SGSTLTAYVTLEPCSHYGSTPPCCEALIEVGVGRVVVGVEDPDPKVSGRGIQRMREAGVD 130 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + E + L AYL ++ + K A S + M+ S ITG ++ H Sbjct: 131 VKTGCLTGEIRESLRAYLKQRAMGLPLVVGKAAASLNGMVCCENGSSQWITGREAREDSH 190 Query: 185 L-LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LRA S AI+VG+GTVLADD LT R E P+R++LDP ++ +KI+ T Sbjct: 191 RTLRALSQAIVVGVGTVLADDCSLTVRGVEGLEKQPLRVVLDPSARILRTAKILNTEEAP 250 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +++V D + + DL +L L RGV +LVEGGA FI Sbjct: 251 TLVVVGRGADRSGLEKVEILEVELDQNGELDLGGVLRHLADRGVFQVLVEGGAKTLTKFI 310 Query: 304 NSRLVDSII 312 ++VD ++ Sbjct: 311 EKKMVDELV 319 >gi|304383732|ref|ZP_07366191.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973] gi|304335256|gb|EFM01527.1| riboflavin biosynthesis protein RibD [Prevotella marshii DSM 16973] Length = 315 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 153/363 (42%), Gaps = 58/363 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D ++M L+ + NP V +IV + +IG G G HAEV A Sbjct: 1 MSQATTDEKYMRRCLQLAECGRENAKPNPMVGAVIVVENRIIGEGYHVRYGEAHAEVNAF 60 Query: 61 EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + AT YV+LEPC+H G++PPC + IIE G+ RVVV DP +V GRG+ Sbjct: 61 ASICPKDAALLPSATLYVSLEPCAHQGKTPPCTRLIIEKGVGRVVVGCIDPFAKVQGRGI 120 Query: 117 QWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + L + GI V ++E+E ++ Q R +I LK A + + + ++ Sbjct: 121 RMLQEAGIEVTLGVLEAECLALNRRFIVCQHHCRPYIILKWAQTTNGFLDDNNHAMQ-LS 179 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LRA DAIL+G T + P LT R +P RI+L + Sbjct: 180 TPFTRMLVHQLRADVDAILIGRHTDEREHPALTVR--DWSGKNPRRIVLTHKLNI----- 232 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 +L+ L GV SLLVEGG Sbjct: 233 ----------------------------------------HQLMNDLYTEGVQSLLVEGG 252 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 A SF+N+ L D I + + +V+ G +PL KN + ++ YI Sbjct: 253 ATTHQSFLNAGLWDEIRVETAPVVVTNGTKAAPL-----PKNIQIANTKEYDGNLITSYI 307 Query: 356 GKN 358 + Sbjct: 308 KTD 310 >gi|312139593|ref|YP_004006929.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase ribg [Rhodococcus equi 103S] gi|311888932|emb|CBH48245.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibG [Rhodococcus equi 103S] Length = 336 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 121/363 (33%), Positives = 177/363 (48%), Gaps = 37/363 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 ++S DA M A+ S G TS NP V +I+ G V+G G T G PHAEV AL Sbjct: 1 MTSLDAA-MRLAIDASEAARGSTSPNPPVGAVILDASGAVVGVGATRPPGGPHAEVVALA 59 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARG TA VTLEPC+H GR+ PC++ +I+ GI V V DP+ + G L Sbjct: 60 AAGERARGGTAVVTLEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRA 118 Query: 122 KGIIVDR--MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 I V + + + L A+L RQ R H+T K A + D A S ITG + Sbjct: 119 ARIEVTGGLLADDAERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEA 178 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +VH RA+ DAI+VG GTVLADDP LT RL L H P+R+++ + ++++ Sbjct: 179 RARVHADRARLDAIVVGTGTVLADDPWLTARLPDGSLAPHQPLRVVVGNRP-VPSTARVL 237 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 A AP ++ D+ ++L+ L + +LVEGG Sbjct: 238 DDA--APTLV----------------------LRTHDVGEILSALADQ--DDVLVEGGPR 271 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +A +F+ + +VD + Y + +V+G G + + F + G D+ L Sbjct: 272 LAGAFLAAGVVDRVQAYIAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNL 331 Query: 355 IGK 357 I + Sbjct: 332 IPR 334 >gi|242042489|ref|XP_002468639.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor] gi|241922493|gb|EER95637.1| hypothetical protein SORBIDRAFT_01g049430 [Sorghum bicolor] Length = 396 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 165/358 (46%), Gaps = 23/358 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA++M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 50 DLDAQYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAG 109 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 110 NLAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGI 169 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182 + + E+ + AY+ R + ++ TL+ +S + + G G+ G+ S Sbjct: 170 NVRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIVTNQIGKGADQSGGYYS--- 226 Query: 183 VHLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 L + D +++ LA L R G P+ II+ L + Sbjct: 227 --QLMKEYDGVIISSD--LAKMSSLPLSREAGAN--QPLYIIIAQGENSRLHIPSLSEEH 280 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV------EGG 295 + VI++ D PV A + + DL+ +L +L RG+ S+LV E Sbjct: 281 ASKVIVLA--DSPVTAAP---AGVEVAVLRQIDLESILQLLAQRGLCSVLVDFREATESF 335 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A++ + F +LV +++ G+ + G + V +E Sbjct: 336 ASLLNDFQEDKLVQKVVVEILPFWFASEGLSNLAFGGSQSFPLKNLEHREVNGGVLME 393 >gi|298250252|ref|ZP_06974056.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297548256|gb|EFH82123.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 372 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 178/367 (48%), Gaps = 19/367 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M A+ + G T+ P V ++V+DG+V+G+G T+ PHAEV AL +AGE Sbjct: 2 DDQEAMRLAIAHAHSVEGRTAPRPPVGAVVVRDGVVVGQGATSPPYGPHAEVHALNDAGE 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGA YVTLEPC +PPC + I+ GIR V+V DP+ VSG+GL L + G+ Sbjct: 62 LARGADLYVTLEPCCVTIHTPPCTRAILAAGIRHVIVSSLDPNPLVSGQGLTQLREAGVE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + + E + + T ++R ++T K A++ D I + I+G ++ VH Sbjct: 122 VTVGVGAEETDEIIRPFATFIRQQRPYVTAKWAMTLDGKIATHSSDAYWISGSEARRWVH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG-------LQEHSPMRIILDPHFKLSLDSKII 237 LR + DAILVG GTV ADDP LT RL P+R++L L SK++ Sbjct: 182 NLRDRVDAILVGSGTVRADDPMLTVRLTDEERLYARAPRQGPLRVVLASQGALPAQSKLL 241 Query: 238 KTALLAPVIIVTENDDPVLALA-FRKKNINIIY-----CDCRDLKKLLTILVGRGVTSLL 291 + L + I+ D PV R + +I DL L+ L +GV +L Sbjct: 242 QPDLASDTCIIVGEDCPVEQQQRLRDTGVEVIQVASNNTSQLDLTSALSALAQKGVMHVL 301 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYF 346 +EGG + S + + +D + + + ++G SPL L VR Sbjct: 302 IEGGNSTLGSAFDQQRIDHVAAFIAPKLVGGEAALSPLGGKGLAFMREALQLQQVRIQII 361 Query: 347 GSDVCLE 353 G DV +E Sbjct: 362 GEDVLIE 368 >gi|303327265|ref|ZP_07357707.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3] gi|302863253|gb|EFL86185.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. 3_1_syn3] Length = 385 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 25/373 (6%) Query: 3 VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 ++ D A FM A+ + NP+V ++++DG V+ RG G HAEV L+ Sbjct: 1 MTEQDFAPFMREAIALAEQGRWKACPNPTVGAVLLRDGRVVARGWHHEAGQDHAEVDCLK 60 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G + +G T VTLEPC+H G++PPC Q I++ GI RVV+ + DP+ + +G G Sbjct: 61 DAATRGVDPKGCTLVVTLEPCNHQGKTPPCTQAILDAGISRVVMGLADPNPQAAG-GAAR 119 Query: 119 LSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ V + E+E + + +L Q R ++ LK+A + D I S I+ Sbjct: 120 LRDTGMEVLGPVCEAECRDLVADFLVWQSTDRPYVILKMAATLDGRIATRNGQSQWISCE 179 Query: 178 ISKNQVHLLRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-L 232 S+++V LRA A+LVG GT AD+P LT R +G P+ +L Sbjct: 180 TSRHEVQELRAGLGLSGGAVLVGGGTFRADNPRLTAREDGYDGPQPLACLLTSRLPKPDA 239 Query: 233 DSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTIL-VGR 285 D ++K + + A A R+ + ++ D +L L Sbjct: 240 DFHLLKERPGQTIFLASPAAAASTTAQALRQMGVRVLALGPGPQGGPDFPELFRALRREL 299 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFM 339 G +L EGG +A + + + VD L+ + +++G+ PL G Sbjct: 300 GCPYVLCEGGGRLALALLEAGFVDEFHLHLAPMILGDSDA-RPLFAGRAPLSLDEALRLR 358 Query: 340 CVRRDYFGSDVCL 352 R G+DV + Sbjct: 359 VSRTGLCGNDVHI 371 >gi|330888055|gb|EGH20716.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. mori str. 301020] Length = 276 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 102/273 (37%), Positives = 146/273 (53%), Gaps = 14/273 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 A E ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 ASELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 LD+ + ++VT + + Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGH 274 >gi|283851293|ref|ZP_06368575.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B] gi|283573243|gb|EFC21221.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. FW1012B] Length = 383 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 176/372 (47%), Gaps = 21/372 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA- 63 + DA FM+ AL + G + NP V ++V+DG ++ G G PHAEV+ L +A Sbjct: 2 ASDADFMARALVLAERGRGFVTPNPRVGAVLVRDGAIVAEGWHKVFGGPHAEVECLHDAE 61 Query: 64 --GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 G + GAT YVTLEPC+H+G++PPC++ +++ + RVVV DP+ V+G G + L Q Sbjct: 62 KKGVDPAGATMYVTLEPCNHFGKTPPCSRTLLDARVGRVVVGCLDPNP-VAGGGAELLRQ 120 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + ++ E + + ++ + R +T+K+A++ D I S ++G S+ Sbjct: 121 GGVDVTVGVLALECRDAIADFVVWKTLGRPFVTVKLAMTLDGRIASRTGDSGWVSGEASR 180 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---LQEHSPMRIILDPHFKLSLDSKII 237 +VH +RA A+LVG GT+ AD+P LT RL+G + P+ + + + Sbjct: 181 ARVHAMRAACQAVLVGGGTLAADNPRLTHRLDGGPLARNPQPLAVAVTRRLPAPDGPLAL 240 Query: 238 KTALLAPVIIVT--ENDDPVLALAFRKKNINIIYCDCR------DLKKLLTILVGRGVTS 289 ++I T A + + + L L+ + V + Sbjct: 241 VRDRPEQLVIFTGKAAAAGPAAAKLTALGVRVFGLPEKADGGLDLLPGLVRLRTEANVYT 300 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRD 344 +L EGG +A + + L+D + ++ + V+G+ + + + F V + Sbjct: 301 VLCEGGGGLAATLLAQGLLDELTVFYAPKVLGDDKAVAGFSGLAVPRMAGAAPFRFVATE 360 Query: 345 YFGSDVCLEYIG 356 G D+ + Sbjct: 361 RVGEDLMVTARP 372 >gi|312869208|ref|ZP_07729380.1| riboflavin biosynthesis protein RibD [Lactobacillus oris PB013-T2-3] gi|311095229|gb|EFQ53501.1| riboflavin biosynthesis protein RibD [Lactobacillus oris PB013-T2-3] Length = 352 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 170/350 (48%), Gaps = 12/350 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D M A+ ++ T NP V ++VK+G V+ G T G PHAE AL + A Sbjct: 3 DEDLMGLAVAAAKQAGVATWRNPGVGAVVVKNGHVLATGHTQPYGGPHAERDALSQLAPG 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GAT YVTLEPC+HYG+ PPC Q II+ GI+RVV+ DP V+G+G+ L GI Sbjct: 63 QAAGATLYVTLEPCNHYGKQPPCTQLIIDSGIQRVVIAQLDPHALVTGKGVAALRHHGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + + Y R +TLK AVS D I IT +VH Sbjct: 123 VVTGIGTQQAAQVNPHYNFFYRHHRPWVTLKQAVSLDGRISAGPGQRTAITNQAVYQRVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS--LDSKIIKTALL 242 RA I++G T + DDP L L H P+R++LD +L+ D ++ + L Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTL-VPTPQLT-HLPIRVVLDRRGRLADYPDRQLFRDG-L 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 AP + TE L R + + ++ +L GV SL VEGG + ++F Sbjct: 240 APTWVFTERKSLPDRLGPRA---WVFVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNAF 296 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + LV+ ++ Y S +++G+ G+P + F + + G++V + Sbjct: 297 ARAGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRI 344 >gi|149186473|ref|ZP_01864786.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21] gi|148830062|gb|EDL48500.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. SD-21] Length = 329 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 138/362 (38%), Positives = 180/362 (49%), Gaps = 46/362 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ DAR++ AA R + L NP+V CL+V G VI RG T GG PHAE AL Sbjct: 1 MIPTASDARWLDAAARLASRGRPLARPNPAVGCLLVNKGRVIARGWTREGGRPHAEAVAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E+AG ARGATAYVTLEPC+H R P C+ +++ G+ RVVV DPD R SG GL+ L Sbjct: 61 EQAGSAARGATAYVTLEPCAHRSTRGPACSDLLVKAGVARVVVGALDPDPRTSGEGLERL 120 Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI V + K L YL R R H+TLK+A+S D I MA S ITG + Sbjct: 121 RRSGIEVSQDYTEAVKASLAGYLIRAHRGRPHVTLKLALSLDGCIAMADGSSQWITGEEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH RA SDAILVG GT D P L RL GL++ SP R++L + D Sbjct: 181 RAHVHSRRAMSDAILVGGGTWRQDKPHLDVRLPGLEDRSPARVLLSRG--VPPD------ 232 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + +I D ++ + GV L VEGGA A Sbjct: 233 ------------------------GVKVI----NDPAQIAQL---EGVHYLYVEGGAGAA 261 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-----YLEKNFMCVRRDYFGSDVCLEY 354 SF+ + LVD + +YR+ I+IG G P+ + G ++ GSD Y Sbjct: 262 ASFVRADLVDRLEIYRAPILIG-NGAPALGDIGLGSLAEAHGRWVLAETRRLGSDTYTAY 320 Query: 355 IG 356 Sbjct: 321 RR 322 >gi|260655866|ref|ZP_05861335.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33 E1] gi|260629482|gb|EEX47676.1| riboflavin biosynthesis protein RibD [Jonquetella anthropi E3_33 E1] Length = 358 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 121/358 (33%), Positives = 177/358 (49%), Gaps = 15/358 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL + G TS NP V C+IV+DG VI G G PHAE AL AGE A GA Sbjct: 1 MRMALSLAARGAGTTSPNPMVGCVIVRDGHVIATGWHRAPGAPHAEAAALAAAGERAEGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YV LEPC+H GR+PPCA ++ + RVV + DP +V+G+G+ L + GI VD + Sbjct: 61 TVYVNLEPCAHQGRTPPCAPALVSAKVVRVVAGLVDPFPQVAGKGIGILREAGIEVDCPV 120 Query: 131 ESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E + +L+ KR +TLKIA S D + + S ITG ++ HLLR++ Sbjct: 121 LAEESAWLNRGFLSAVKRKRPWVTLKIASSLDGITALPDGTSQWITGPTARKLGHLLRSE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +DA++VG T D P L R + SP +++ F + ++ + A Sbjct: 181 NDAVMVGGTTARRDKPRLDVR--DVDGPSPRPVVVSRDFS---AAMLLPRSGDALAYAAD 235 Query: 250 ENDDPVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 P + + + DL +L L RGV LLVEGG +A S + LV Sbjct: 236 GCPIPDK---LKGRAATVPTGPGGLDLSAVLADLCRRGVNRLLVEGGGTLASSLLQEGLV 292 Query: 309 DSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRR--DYFGSDVCLEYIGKNLCLQE 363 D + ++++ V+G+G G+ L L + VR D+ +E G + C Q+ Sbjct: 293 DQLSVFQAPCVLGKGTGMAQELLTESLLARWNFVRTAERRVDDDLWIE--GVSPCSQD 348 >gi|317484774|ref|ZP_07943673.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6] gi|316923981|gb|EFV45168.1| riboflavin biosynthesis protein RibD [Bilophila wadsworthia 3_1_6] Length = 379 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 111/376 (29%), Positives = 173/376 (46%), Gaps = 22/376 (5%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM A + + NP+V ++V+DG+ + RG G HAEV+ L++A G Sbjct: 6 ESFMREAAELAERGRWSAAPNPTVGAVLVRDGVAVARGWHTAYGKSHAEVECLKDAEAKG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + T VTLEPC+H G++PPC + +I GIR VV+ + DP+ + +G G++ L++ G+ Sbjct: 66 VDPSACTLVVTLEPCNHQGQTPPCTEAVIAAGIRHVVIGLRDPNPKAAG-GMERLAEAGV 124 Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V+ + E L +L Q KR ++ LK+A++ D I S ITG ++ QV Sbjct: 125 EVEAGVCEELCRDLVADFLIWQTTKRPYVMLKLAMTLDGRIATRTGHSRWITGETARRQV 184 Query: 184 HLLRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H LRA AILVG T+ D+P LT RL+ E P+ + + + K Sbjct: 185 HELRANVGRAGGAILVGGNTLHTDNPLLTARLDDPVERQPLAVSISSRVPAPDSLLLFKE 244 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGR-GVTSLLVE 293 + T + A R++ + I D DL ++L L G +L E Sbjct: 245 RPTETIFFTTASGAATPRAAQLRERGVRIRGLDRWKSGEDLVQILEYLRQEAGCPYVLCE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFG 347 GG + S + + LVD L+ + V+G+ PL +G VR + G Sbjct: 305 GGGRLGLSLLEAGLVDEFHLHIAPKVLGDNDA-RPLFDGRTPLELDEALSLRLVRMEPCG 363 Query: 348 SDVCLEYIGKNLCLQE 363 D L + C Q Sbjct: 364 EDGHLIFRPVRACSQA 379 >gi|333029739|ref|ZP_08457800.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM 18011] gi|332740336|gb|EGJ70818.1| riboflavin biosynthesis protein RibD [Bacteroides coprosuis DSM 18011] Length = 348 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 100/315 (31%), Positives = 158/315 (50%), Gaps = 12/315 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 ++M ++ + + + NP V +IV GI+IG G G HAEV A+ ++ Sbjct: 4 EKYMKRCIQLASYGKLHAAPNPLVGAVIVHKGIIIGEGFHIQSGKAHAEVNAINSVKDQS 63 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T +V+LEPCSH G++PPC II I VV+ DP +V+GRG+ L ++GI Sbjct: 64 LLPESTIFVSLEPCSHTGKTPPCVDLIINKKIPHVVIGCQDPFSKVAGRGIAKLKEQGIK 123 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG--MAGCGSVPITGFISKNQ 182 + ++E+E K +H + Q EKR +I LK A S D I + ++ +S Sbjct: 124 VEIGILENECKELIHRFYIFQEEKRPYILLKWAESADGYIDQIRSSGTPTLLSSPLSSIL 183 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H RA+ ++ILVG T L D+P LT R + P+R+I+D + L I + Sbjct: 184 THKRRAEVESILVGRRTALLDNPSLTTR--HWYQKDPIRLIIDRYLSLPNTLHIFDGS-- 239 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I TE D F+ + + + L ++L + + + S+LVEGGA + SF Sbjct: 240 TPTFIFTEVD---KKSNFKNRTYIQLDFNADILTQILNWMYFQNIQSVLVEGGAQLHQSF 296 Query: 303 INSRLVDSIILYRSQ 317 I++ L D + S Sbjct: 297 IDADLWDETHIEESP 311 >gi|170017119|ref|YP_001728038.1| riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20] gi|169803976|gb|ACA82594.1| Riboflavin biosynthesis protein RibD [Leuconostoc citreum KM20] Length = 347 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 156/343 (45%), Gaps = 21/343 (6%) Query: 25 TSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR--GATAYVTLEPCSHY 82 T NP V +IVK+G ++ G G HAE+ A E ++ +T YVTLEPC Sbjct: 22 TYENPRVGAIIVKNGQILATGYHHSFGAAHAEINAFENLRDQTDIVDSTMYVTLEPCFVT 81 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYL 142 G+ CA I + G++RVVV DP+ GR + +L Q GI VD + + +I + Sbjct: 82 GKVGACALAIAQWGVKRVVVGSFDPNPDTHGRSVTFLRQAGIRVDVLGTEDSQILNPGFY 141 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 ++ LK+A S ++ + + S IT ++ VH RA AIL+G T+L Sbjct: 142 HYFERHLPYVQLKLAESANHFVASSQGQSTKITDRLADIDVHKERASKSAILIGSETMLI 201 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D P LT R + P+R+++D +L +I T N D Sbjct: 202 DQPNLTVRHVPINHPQPLRVVIDRRGRLQNK----MDRATNNWLIFTTNTDFAKQYDN-- 255 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + L +LT L + + S++VEGG ++ +F+ + L I+Y + ++ E Sbjct: 256 -----VLLMSHGLLSVLTSLASKNIQSVMVEGGPSLITAFLKANLWQEFIVYTADSILSE 310 Query: 323 GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN--LCLQE 363 G+PS ++ F V G+ + Y+ CLQE Sbjct: 311 DGVPS------VQPLFNSVSSYRVGNTLKSRYLNDRSVSCLQE 347 >gi|241888469|ref|ZP_04775779.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC 10379] gi|241864861|gb|EER69233.1| riboflavin biosynthesis protein RibD [Gemella haemolysans ATCC 10379] Length = 356 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 115/362 (31%), Positives = 169/362 (46%), Gaps = 14/362 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE--EAGE 65 FM AL ++ T TNP V +IVKD +I RG GC HAE A+ E E Sbjct: 3 EYFMKLALLEAKRGTKYTHTNPIVGAIIVKDDEIIARGSHLRYGCEHAEKNAISTCETPE 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 + +T YVTLEPC+H G+ PPC I+E GI +VVV DP+ VSG+G+++L GI Sbjct: 63 KLFNSTLYVTLEPCNHKGKQPPCTDTIVEMGISKVVVAQLDPNPLVSGKGIKYLQDNGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ ++E E +AY EKR ++ LK A S D + ITG + V Sbjct: 123 VITGVLEKEAYNLNYAYNLFHSEKRPYVVLKQATSLDGKLAFTNKR-TQITGKDVYDFVR 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD-SKIIKTALLA 243 R AILVG TVL D+P+LT P RI+LD + + + L+ Sbjct: 182 NERDNYQAILVGARTVLTDNPKLT--GANTSLFPPKRIVLDADGDIFEHNNLNLFNNSLS 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 VI+ T+ ++ II +K++L+ + G+ S+ VEGG + F+ Sbjct: 240 EVIVFTKQ-----KCKNLPSHVTIITPKEFSIKEILSEVAKLGIQSVYVEGGPNIHDQFL 294 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLCL 361 S D +I Y S I++G S + + G D+ + + CL Sbjct: 295 ASGYWDEVITYISPILLGGNNTSSFTSNRITNEKIQLHDTKITKLGEDIRVSGRRVSQCL 354 Query: 362 QE 363 Q+ Sbjct: 355 QD 356 >gi|323138569|ref|ZP_08073637.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242] gi|322396203|gb|EFX98736.1| riboflavin biosynthesis protein RibD [Methylocystis sp. ATCC 49242] Length = 376 Score = 271 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 195/370 (52%), Gaps = 12/370 (3%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P + D FM+AAL R ++G T+ NP+V L+V+DGI+I RG TA GG PHAE AL Sbjct: 7 IPYVATDEAFMAAALALGRRNMGRTAPNPAVGALVVRDGIIIARGWTAKGGRPHAEAIAL 66 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARGAT YVTLEPCSH+G +PPC II GI RVV ++DPD RV+GRG Q L Sbjct: 67 AAAGEAARGATLYVTLEPCSHHGSTPPCVDAIIASGIARVVTAMEDPDPRVAGRGHQILR 126 Query: 121 QKGIIVDRMMESEGKIFLH-AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFI 178 GI V E+ H ++ R + R +TLK+A + D A ITG I Sbjct: 127 DAGIDVFIGPEAAAARADHLGHILRVTKHRPMVTLKLAQTPDGYAAGAAHDPRLRITGPI 186 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + H+ RA DAI+VG GT DDP +T RL GL+ +P+R++LD LS S++ Sbjct: 187 ADAFTHVHRALHDAIMVGAGTAREDDPLMTVRLPGLEGVTPLRVVLDEKLALSPRSRVAS 246 Query: 239 TALLAPVIIVTENDDPVL--ALAFRKKNINIIYCDCRDLK----KLLTILVGRGVTSLLV 292 T+ P++++T D P ++ + K L +L RG+T + Sbjct: 247 TSRETPLLVITALDVPDADVHRFMDATGAEVVKVPMYEGKLDLLAALRLLAERGITRVFS 306 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLE--KNFMCVRRDYFGS 348 EGG VA S + + L D +IL+ +G G P +P LE + + G+ Sbjct: 307 EGGPRVAESLLTAGLADEVILHMGVKPLGRPGQPALTPKARTALENVSRYRLIESRMLGA 366 Query: 349 DVCLEYIGKN 358 D Y + Sbjct: 367 DQMTRYARAD 376 >gi|88856442|ref|ZP_01131100.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1] gi|88814309|gb|EAR24173.1| riboflavin-specific deaminase [marine actinobacterium PHSC20C1] Length = 345 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 112/352 (31%), Positives = 169/352 (48%), Gaps = 34/352 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + M L + +T NP V C++V D G ++ G G PHAEV AL + G Sbjct: 11 EKLMLHGLSLASRG-PITGGNPQVGCVLVNDAGEIVAEGWHHGAGTPHAEVDALTKLGGN 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G TA VTLEPC+H+GR+ PC++ +I+ G+ RVV V DP VR G Q L G+ V Sbjct: 70 AAGLTAVVTLEPCNHHGRTGPCSEALIDAGVSRVVYAVSDPGVRSGGGS-QRLRDAGVEV 128 Query: 127 DRM-MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +++ + FLH++LT +R H+T+K A + D A S ITG ++ VH Sbjct: 129 IGGASQADAEEFLHSWLTATRLQRPHVTVKWASTLDGRAAAADGTSQWITGTAARQHVHE 188 Query: 186 LRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 RA++DAI+VG GTVLADDP LT R L E P ++L ++ +++ Sbjct: 189 QRARADAIVVGTGTVLADDPSLTARGDAGELLEWQPQPVVLGRR-EIPAAAQL------- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 R + D DL L+ L G+ + VEGG +A +FI Sbjct: 241 -----------------RHHPKQLRQFDGGDLNAALSALFEAGIRRVFVEGGPTIASAFI 283 Query: 304 NSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 + L D +++Y + ++G + + K+ G+DV + Sbjct: 284 AAGLADELLIYLAPKLLGGPKVALGELGVATMAEAKDLSITELRPLGNDVLI 335 >gi|168704914|ref|ZP_02737191.1| riboflavin biosynthesis protein RibD [Gemmata obscuriglobus UQM 2246] Length = 355 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 169/350 (48%), Gaps = 11/350 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + G NP V +++ G +G G G PHAEV AL+ AG ARG Sbjct: 1 MRHALALAARGRGAVEPNPMVGAVVLDPTGKPVGEGWHQKFGGPHAEVFALQAAGARARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T VTLEPC H+G++PPC ++ G+ RVV + DP RV+G GL L G+ + Sbjct: 61 GTLLVTLEPCCHHGKTPPCTDAVLRAGVARVVAAMADPFPRVAGGGLALLRAAGVDVQVG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E++ + YL R + K A++ D + S I+G S+ +VH LR Sbjct: 121 LCEADARALNAPYLKLLSTGRPWVHAKWAMTLDGKLAARTGDSKWISGAESRRRVHELRG 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GTV+ADDP LT R G+ P R++L +L ++ TA APV++ Sbjct: 181 RLDAILVGRGTVVADDPLLTARPAGV--RVPARVVLTASGELPAACQLRATAREAPVLVY 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T N P + ++ L +L L R T++L+EGGA + + ++ + Sbjct: 239 TAN--PGKLGGWAADGAEVVGFGELTLDAVLADLGRRRFTNVLLEGGAGLLGAARDADAI 296 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLE 353 D ++ + V+G +P+ + + + G+DV + Sbjct: 297 DEFHVFIAPKVVGGSAALTPVGGTGAARMAEALTLEGVTFEPSGADVYVH 346 >gi|150026064|ref|YP_001296890.1| riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum JIP02/86] gi|149772605|emb|CAL44088.1| Riboflavin biosynthesis protein RibD [Flavobacterium psychrophilum JIP02/86] Length = 335 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 95/357 (26%), Positives = 168/357 (47%), Gaps = 32/357 (8%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +++ + ++ + NPSV +IV + +IG G TA G HAEV A+ + Sbjct: 5 EKYIKRCIELAKNGLPAAMPNPSVGAVIVFENKIIGEGYTAAYGGNHAEVNAILSVKNKD 64 Query: 67 -ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 +T YV+LEPCSH+G++PPC II+ I VV+ D + +VSG+G++ L + G Sbjct: 65 LLAKSTIYVSLEPCSHFGKTPPCCDLIIKYKIPNVVIGTVDSNSKVSGQGIKKLIEAGAN 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM---AGCGSVPITGFISKN 181 ++ ++E+E + + T +KR +I LK A ++D I V IT S+ Sbjct: 125 VIVGILEAECRESNKRFFTFHEKKRPYIILKWAETKDQFIAPLLKNEQKPVWITNIYSRQ 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H R + AILVG T + D+P L R +P RI+LD + ++ ++ I + Sbjct: 185 LAHKWRTEEQAILVGTQTAIDDNPRLDVR--DWTGKNPTRIVLDKNNRIPKENHIFD--I 240 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 ++++ I Y + L ++++ L + S+++EGG + Sbjct: 241 RQKTFVISDK--------------TINYSENVAL-QIVSFLFDNNLQSVIIEGGRQTLQT 285 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 FI++ L D ++ Q + G +P+ V+R +D L Y+ + Sbjct: 286 FIDANLWDEARIFVGQELF-SSGTKAPVITS------KRVKRSKIDNDELLIYLNHD 335 >gi|182439882|ref|YP_001827601.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178468398|dbj|BAG22918.1| putative riboflavin/cytosine deaminase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 366 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 115/361 (31%), Positives = 173/361 (47%), Gaps = 12/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ D M A+ + +G TS NP V C+I G V G G G PHAEV AL Sbjct: 3 TAADITAMRRAISLAARGLGSTSPNPVVGCVITDAAGAVAGEGFHQRAGGPHAEVHALRA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG ARG TAYVTLEPC H GR+ PC+Q ++ GI RVV V DP+ +G G L Sbjct: 63 AGGRARGGTAYVTLEPCDHTGRTGPCSQALLAAGISRVVYAVADPNPGAAGGG-DTLRHA 121 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+LT R ++ K A + D I A S IT ++ Sbjct: 122 GVRAEGGLLADEAEAGNAAWLTSVRRGRPYVLWKYAATLDGRIAAADATSRWITSPEARA 181 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240 VH LRA++DA+LVG GT DDP+L R P+R+++D + + ++++ Sbjct: 182 DVHRLRAEADAVLVGSGTARTDDPQLAVR-GIDGATQPLRVVVDTNATAVKPGARVLDAT 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V + + L A + DL LL L RGV S+L+EGG +A Sbjct: 241 AATLVAVADDAPAGHLPEAAVLRLPRAATGPGLDLDALLGALHERGVRSVLLEGGPTLAG 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 +F+ + VD ++ Y + +++G G P+ L + + G D+ + + Sbjct: 301 AFVAAGKVDKVVGYLAPVLLGAG--PAALADAGISTIAGALRLDVTETVPIGPDLRITAV 358 Query: 356 G 356 Sbjct: 359 P 359 >gi|83593160|ref|YP_426912.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodospirillum rubrum ATCC 11170] gi|83576074|gb|ABC22625.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rhodospirillum rubrum ATCC 11170] Length = 367 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 196/356 (55%), Gaps = 12/356 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + +G NP+V C++V G V+GRG T GG PHAE +AL+ AG ARG Sbjct: 1 MRTALGLAARGLGRVWPNPAVGCVLVDAQGRVVGRGWTQPGGRPHAEREALDRAGAAARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 ATAYVTLEPCSH+G++PPCA +I+ G+ RVV + DPD RVSGRG L G++V+ Sbjct: 61 ATAYVTLEPCSHHGKTPPCADALIDAGVVRVVAALGDPDPRVSGRGFAQLRAAGVVVETG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + +L ++ R +TLK A + D I AG S ITG ++ HLLRA Sbjct: 121 LLVDEARALNLGFLLHRLRGRPLVTLKAATTLDGRIATAGGDSQWITGPQARRYGHLLRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP-VII 247 DAI +G+GT LADDP L+CRL GL++ SP+R++ D L L ++++A P II Sbjct: 181 DHDAIAIGLGTALADDPLLSCRLAGLEDRSPLRVVFDSALALPLGGALVRSADRLPLWII 240 Query: 248 VTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T A ++ I+ + + L+ L G+GVT LLVEGG +A +F Sbjct: 241 TTAAATAARRQALVERGAEILEVEADPRGRPTIAGALSALAGQGVTRLLVEGGGHLAAAF 300 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + LVD + +R+ +IG G+ + ++ F G D Y Sbjct: 301 LAADLVDRLAWFRAARLIGGDGLAAVAALGIDRLADSVQFSLEACQTLGDDRLELY 356 >gi|120602900|ref|YP_967300.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris DP4] gi|120563129|gb|ABM28873.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Desulfovibrio vulgaris DP4] Length = 377 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 109/366 (29%), Positives = 172/366 (46%), Gaps = 23/366 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ + + NP+V ++V+DG V+ RG G PHAEV+ L +A G + Sbjct: 8 FMREAIALAERGRWYAAPNPTVGAVLVRDGEVVARGWHTGYGKPHAEVECLRDAASKGVD 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T VTLEPC+H+G++PPC+ I++ GI RVVV + DP+ V+ G ++L G+ V Sbjct: 68 PAHCTLVVTLEPCNHHGKTPPCSHAIVKAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + E E + +LT ++ ++ LK+A + D I S I+G ++ VH Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGEEARATVHE 186 Query: 186 LRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LRA+ A+LVG T+ DDP+LT R+ L PM ++ H I Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRHLPHHDALPRIFRER 246 Query: 242 LAPVIIVTE--NDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILV-GRGVTSLLVE 293 +I T+ A R + ++ DL+ L L GV +L E Sbjct: 247 PGQCVIWTDAIGAGTEAADTLRTSGVCVMALPLTPAGRLDLRAGLVRLRDDHGVEHVLCE 306 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-MCVRRDYFGSDVCL 352 GG +A S + + LV L+ + +IG+ +PL +G + +R G + Sbjct: 307 GGGKLALSLLEAGLVGEFHLHMAPKIIGDAEA-APLFDGRAPLHMDEALRLRMTG----I 361 Query: 353 EYIGKN 358 E G + Sbjct: 362 ERRGDD 367 >gi|332519663|ref|ZP_08396127.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4] gi|332044222|gb|EGI80416.1| riboflavin biosynthesis protein RibD [Lacinutrix algicola 5H-3-7-4] Length = 321 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 160/350 (45%), Gaps = 39/350 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--AR 68 M A++ + +G T NP V +IV + I+IG G T+ G HAEV A+ + + Sbjct: 1 MQRAIQIANNGLGTTRPNPMVGAVIVHNNIIIGEGFTSAYGGNHAEVNAINAVKNKDLLK 60 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 +T YVTLEPCSHYG++PPC+ II I VV+ D + V+G+G++ L + Sbjct: 61 KSTLYVTLEPCSHYGKTPPCSDLIIHHNIPNVVIGCVDDNPEVAGKGIKKLMGANCKVTL 120 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKNQVH 184 ++E++ K + T +KR +I LK A + + I V IT IS+ VH Sbjct: 121 GILENKCKEHHKRFFTFHNKKRPYIILKWAETSNGYIAPKTRTEQKPVWITNKISRQLVH 180 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RAQ AILVG TV+ D+P L R ++P RI+LD + LS + I Sbjct: 181 KWRAQEQAILVGTTTVIKDNPTLNVR--DWSGNNPTRIVLDKNNLLSKEYTIFNNEAETF 238 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 I + ++ + L + + S+++EGGA FIN Sbjct: 239 TIKAQTAN------------------------EICSFLFKQTINSVIIEGGAKTLQLFIN 274 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L D +++ I GI +P G L+ + +D L Y Sbjct: 275 ENLWDEARVFKGNITF-TDGIKAPNFSGELKA------EETILNDTLLTY 317 >gi|323699086|ref|ZP_08110998.1| riboflavin biosynthesis protein RibD [Desulfovibrio sp. ND132] gi|323459018|gb|EGB14883.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans ND132] Length = 364 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 158/365 (43%), Gaps = 19/365 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ A+ + G T+ NP V ++V+DG+++ G G HAE + L +A G + Sbjct: 1 MARAVELAGRGRGATAPNPCVGAVLVRDGVIVAEGWHTRFGRLHAERECLADARRKGVDP 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGA YVTLEPC+H+G++PPC + +IE G+ V V DP+ V+ G++ L GI V Sbjct: 61 RGAAMYVTLEPCNHHGKTPPCTEALIEAGVAEVFVGTRDPNP-VAAGGVEKLRAHGIEVT 119 Query: 128 RMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + L +L Q + +K+A + D I A P++ S +VH L Sbjct: 120 VGVLEQPCRDLIADFLLWQNTHSCYNIVKMAATLDGKIAAAARRPEPVSCPESLARVHDL 179 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAP 244 RA + A++VG T AD+P LTCR L P +I+ + Sbjct: 180 RALAGAVIVGGNTFYADNPSLTCRKKDLPPDFVQPFGVIVTSRLPDDPSRFTLLRERPER 239 Query: 245 VIIVTENDDPVLALA--FRKKNINIIYCDCRDLKKLLTILVGR-----GVTSLLVEGGAA 297 I +T A R++ ++ R +L R G L EGG Sbjct: 240 AIFMTSKTAAHSPQADVLRRRGTSVWPMPGRAGSLVLACGFERLRYDCGCHYTLCEGGGR 299 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-----GYLEKNFMCVRRDYFGSDVCL 352 A + I L D ++ + + ++G+ PS +F + G+D+ L Sbjct: 300 FALALIEQGLADELVHFVAPRILGDDAAPSAYSGRDNVPMAEALDFRIADFEPVGTDIML 359 Query: 353 EYIGK 357 + Sbjct: 360 TLRRR 364 >gi|108799353|ref|YP_639550.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS] gi|119868469|ref|YP_938421.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS] gi|126435011|ref|YP_001070702.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS] gi|108769772|gb|ABG08494.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. MCS] gi|119694558|gb|ABL91631.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. KMS] gi|126234811|gb|ABN98211.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. JLS] Length = 333 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 110/357 (30%), Positives = 166/357 (46%), Gaps = 36/357 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M+ A+ + G T NP V +I+ DG V G G T G PHAEV AL AG + Sbjct: 4 EAAMALAVEQADRVKGGTYPNPPVGAVILDADGEVAGVGATQPPGGPHAEVMALRRAGRK 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G TA VTLEPC+H+GR+PPC ++ + VV V DP+ +G + + Sbjct: 64 AAGGTAVVTLEPCNHHGRTPPCVDALLAAEVSAVVYAVPDPNPVAAGGAARLGESGVTVT 123 Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ L +L +Q + H+T K A S D A S IT ++ VH Sbjct: 124 AGVLGDAVAGGVLREWLHKQRTGKPHVTWKFATSVDGRSAAADGSSQWITSEAARTDVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 RA +DAI+VG GTVL DDP LT RL L E P+R+++ ++S DS+++ Sbjct: 184 RRAVADAIVVGTGTVLVDDPVLTARLPDGSLAERQPLRVVVGKR-EISSDSRVLNDDSRT 242 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 VI RD +++L L R T +++EGG +A +F+ Sbjct: 243 MVI------------------------RTRDPQEVLRALSDR--TDVILEGGPTLAGAFL 276 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIG 356 + +D I+ Y + I++G + + + G L + + G DV L + Sbjct: 277 RAGAIDRIVAYVAPILLGGP-VTAVDDVGVLSIAHAQRWRFDGITPIGPDVLLSLVP 332 >gi|333028400|ref|ZP_08456464.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071] gi|332748252|gb|EGJ78693.1| putative riboflavin/cytosine deaminase [Streptomyces sp. Tu6071] Length = 372 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 119/361 (32%), Positives = 175/361 (48%), Gaps = 14/361 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE 62 ++ + M A+ + +G T NP V C+++ G V GRG G PHAE+ AL Sbjct: 11 TAAETAAMREAIALAARGLGRTRPNPVVGCVVLDASGEVAGRGWHQRAGGPHAEIHALRA 70 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARG TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + G L Sbjct: 71 AGERARGGTALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAA 129 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E E A+LT R H+T K A S D A S IT ++ Sbjct: 130 GVDVEHGLLEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARA 189 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTA 240 VH LRA DA+LVG GT DDP L R P+R++LD + ++++ A Sbjct: 190 DVHRLRATCDAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA 248 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 AP ++ +D P A + DL LL L R V +L+EGGA +A Sbjct: 249 --APTLVALADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGVLLEGGARLAG 306 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 +F+ + D ++ Y + +++G G P+ L + + +R D G D+ + + Sbjct: 307 AFVAAGYTDRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAV 364 Query: 356 G 356 Sbjct: 365 P 365 >gi|298249165|ref|ZP_06972969.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] gi|297547169|gb|EFH81036.1| riboflavin biosynthesis protein RibD [Ktedonobacter racemifer DSM 44963] Length = 383 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 179/365 (49%), Gaps = 20/365 (5%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 FM A+ +R G TS P V ++V++ VIGRG T+ PHAE+ AL EA A Sbjct: 5 EFMQKAIACARSIEGRTSPRPPVGAVLVRENQVIGRGATSPPYGPHAEIHALREAETTAA 64 Query: 69 -GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GA Y TLEPC +PPC II GI+RV++ DP+ +VSGRG+ L + GI ++ Sbjct: 65 VGADLYTTLEPCCITVHTPPCTAAIIAAGIKRVIIGSLDPNPQVSGRGVAQLREAGIEVI 124 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E E + + T + R ++T K A++ D + + I+G ++ VH L Sbjct: 125 TTIAEPETAALIRPFATYITQGRPYVTAKWAMTLDGKLASHTGDASWISGSAARTWVHQL 184 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSP-------MRIILDPHFKLSLDSKIIKT 239 R + DAI++G+GT ADDP LT RL Q P +RI++ +L+ ++ + Sbjct: 185 RDRVDAIMIGVGTAHADDPRLTIRLTEEQRVHPRTQRPNHLRIVVSSRGELNAQLQLFQK 244 Query: 240 ALL-APVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVE 293 L +IV+E P R++ I +I DL L IL R + LL+E Sbjct: 245 QLAPGTCVIVSETSAPDQRERLRERGIQVIEVPADQTGRVDLMAALHILGQREIMHLLLE 304 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGS 348 GG+++ S +L+D + + + +IG G PSP+ L V Sbjct: 305 GGSSLLGSAFEHKLIDHVAAFVAPKLIGGEGAPSPIGGAGLAIMQHAHRLQQVSFQTVAE 364 Query: 349 DVCLE 353 D+ +E Sbjct: 365 DLLIE 369 >gi|308180337|ref|YP_003924465.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum subsp. plantarum ST-III] gi|308045828|gb|ADN98371.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum subsp. plantarum ST-III] Length = 355 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 178/353 (50%), Gaps = 6/353 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+LT RL + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAM-VRPPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359 +D + Y + ++IG G+P+ + F G+++ L + K + Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354 >gi|254495519|ref|ZP_05108443.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152] gi|85819875|gb|EAQ41032.1| riboflavin biosynthesis protein RibD [Polaribacter sp. MED152] Length = 337 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 175/347 (50%), Gaps = 22/347 (6%) Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--ARGATAY 73 + ++ +G+T NPSV +IV +I G T+ G HAEV A+ ++ + AT Y Sbjct: 2 QIAKNGIGVTRPNPSVGAVIVHQNKIIAEGFTSNYGGNHAEVNAIIAVKDKSLLKEATIY 61 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 VTLEPCSHYG++PPCA II+ +++VV+ D + V+G+G++ + + GI + ++E Sbjct: 62 VTLEPCSHYGKTPPCADLIIKHKLKKVVIGTLDTNSLVAGKGVERIEKAGIDVKVGVLEE 121 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV---PITGFISKNQVHLLRAQ 189 + K + T Q +KR ++ LK A SQD I I+ S+ VH LR++ Sbjct: 122 KCKKHHKRFFTSQNKKRPYVILKWATSQDGFIAPLKKEVQKPIWISNQYSQQLVHKLRSK 181 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AILVG T +AD+P+L R ++P+R++LD ++ + I + I +T Sbjct: 182 EHAILVGTNTAIADNPKLNVR--SWSGNNPIRVVLDKSLRIENNLNIYDNS--VKTIFIT 237 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 E + + NI D + +++L +L + S+++EGG +FI+ L Sbjct: 238 E---KEVHNCGDESNIIFEKIDFKQKIAEQVLAVLQKHNIQSVIIEGGTQTLQTFIDENL 294 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 D ++ + + GI +P+ G + + + +D Y Sbjct: 295 WDEAFVFTGDVCL-NDGIKAPVFGGQI------IHQQEIKNDTLKIY 334 >gi|116334232|ref|YP_795759.1| pyrimidine reductase, riboflavin biosynthesis [Lactobacillus brevis ATCC 367] gi|116099579|gb|ABJ64728.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lactobacillus brevis ATCC 367] Length = 356 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 109/363 (30%), Positives = 172/363 (47%), Gaps = 13/363 (3%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-- 63 + FM A+ +R G T TNP V + VK G ++ G G HAE+ AL + Sbjct: 2 LEQSFMQQAVIAARRGSGHTWTNPLVGAVFVKHGKILSVGYHHRYGQRHAEIDALAQLQR 61 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 ++A+GAT YVTLEPCSH+G++PPCA +IE G+ RVV+ DP+ V+GRG+ L G Sbjct: 62 PQQAQGATLYVTLEPCSHFGKTPPCADRLIEVGVGRVVIGQRDPNPLVAGRGISKLRAAG 121 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I V + + AY R +T+K A+S D + A +TG + Sbjct: 122 IPVSVLDST--TALNPAYNFYYQHHRPQVTVKYAMSLDGKVNQAEAQRTYLTGAAAMADS 179 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR-IILDPHFKLSLDSKIIKTALL 242 LR Q AIL+G T+ D P LT R E P+R ++L + + K Sbjct: 180 QQLRRQQQAILIGERTLTIDHPRLTIRDAITDEPVPIRMVVLHDIEHIDTSQPLFK--AP 237 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P+ ++T + A + + + + + +G+ +LLVEGG+ + +F Sbjct: 238 GPIWLLTTHP----ATCQLPEQVRVFTRTTWSPAAITALCYQQGIQALLVEGGSHLQAAF 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN--FMCVRRDYFGSDVCLEYIGKNLC 360 + L D +++Y S ++IG G+P+ + ++ G+DV L + C Sbjct: 294 VRDDLADQLVIYLSPLLIGGAGLPAVYAPDWPSPKRAYIPPVTTLLGNDVKLTTRRQRKC 353 Query: 361 LQE 363 QE Sbjct: 354 SQE 356 >gi|46579612|ref|YP_010420.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. Hildenborough] gi|46449027|gb|AAS95679.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. Hildenborough] gi|311233416|gb|ADP86270.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris RCH1] Length = 377 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 109/367 (29%), Positives = 169/367 (46%), Gaps = 25/367 (6%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM A+ + + NP+V ++V+DG V RG G PHAEV+ L +A G + Sbjct: 8 FMREAIALAERGRWYAAPNPTVGAVLVRDGEVAARGWHTGYGKPHAEVECLRDAASKGVD 67 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T VTLEPC+H+G++PPC+ I+E GI RVVV + DP+ V+ G ++L G+ V Sbjct: 68 PAHCTLVVTLEPCNHHGKTPPCSHAIVEAGITRVVVGLADPNP-VASGGAEYLRAHGVTV 126 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 D + E E + +LT ++ ++ LK+A + D I S I+G ++ VH Sbjct: 127 DMGVCEQECHDLVADFLTWKLTDLPYVILKLASTLDGRIATRSGHSQWISGAEARAAVHE 186 Query: 186 LRAQS----DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LRA+ A+LVG T+ DDP+LT R+ L PM ++ H + + + Sbjct: 187 LRARIGEAGGAVLVGGTTLYTDDPQLTARVAPLPRRQPMAVVATRH--VPHHDALPRIFR 244 Query: 242 LAP----VIIVTENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTIL-VGRGVTSLL 291 P V + A A R + I+ DL+ LT L GV +L Sbjct: 245 ERPGQCVVWTDSTGAGTEAADALRTSGVCIMALPLTPSGRLDLRAGLTRLRADHGVEHVL 304 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 EGG +A S + + LV L+ + +IG+ + +R G Sbjct: 305 CEGGGKLALSLLEAGLVGEFHLHMAPKIIGDAEAALLFDGRAPLHMDEALRLRMTG---- 360 Query: 352 LEYIGKN 358 +E G + Sbjct: 361 IERRGDD 367 >gi|254556365|ref|YP_003062782.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum JDM1] gi|254045292|gb|ACT62085.1| Pyrimidine reductase, riboflavin biosynthesis [Lactobacillus plantarum JDM1] Length = 355 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 179/353 (50%), Gaps = 6/353 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+LT RL + + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLTVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359 +D + Y + ++IG G+P+ + F G+++ L + K + Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354 >gi|332703475|ref|ZP_08423563.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str. Walvis Bay] gi|332553624|gb|EGJ50668.1| riboflavin biosynthesis protein RibD [Desulfovibrio africanus str. Walvis Bay] Length = 380 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 108/368 (29%), Positives = 173/368 (47%), Gaps = 20/368 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM AL + G T+ NP V ++V+DG V+ G G PHAE +A+ +A G + Sbjct: 7 FMRRALELAERCRGFTAPNPCVGAVLVRDGQVVAEGWHKIYGGPHAEREAIADARAKGVD 66 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 YVTLEPCSH+G++PPC + I+E GIRRV V D + V GRG ++L KG+ + Sbjct: 67 TSTCDMYVTLEPCSHHGKTPPCTEAILEAGIRRVFVGCKDLNPTVPGRGTEYLLSKGVQV 126 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + ++ + + R+ TLK+A++ D IG ++G S +V L Sbjct: 127 ELGILEQECRDAIADFMLWKTQGRAWCTLKLAMTLDGRIGGPTGKPESVSGPESHRRVQL 186 Query: 186 LRAQSDAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFK-LSLDSKIIKTAL 241 LRA+SDA+L+G GT+ ADDP LTCRL Q P+ I+ +S +++ Sbjct: 187 LRARSDAVLIGGGTLRADDPRLTCRLQPEGNAQVKRPLAIVATRKLTGISASFYLLRERP 246 Query: 242 LAPV-IIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTI-LVGRGVTSLLVEG 294 + E A + DL L + G +L EG Sbjct: 247 SELIFWTTDEAARSDTADRLGDMGCRVWGLPEHSAGGLDLAAGLERFMRDAGGHYVLCEG 306 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 G +A S D + ++ + +G+ P+ +E ++ +R + GSD Sbjct: 307 GGHMAMSLALQSAADELKVFLAPRALGDERAPASFAGRSVESVAEAVDWRVLRAEPSGSD 366 Query: 350 VCLEYIGK 357 + + + Sbjct: 367 LEITLRPQ 374 >gi|218662593|ref|ZP_03518523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli IE4771] Length = 287 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 147/252 (58%), Positives = 186/252 (73%), Gaps = 1/252 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D FM+AA+R SR H+G T+TNPSV CLIVKDG+V+G+ VTA GG PHAE QAL Sbjct: 1 MSITPHDESFMAAAIRLSRRHLGRTATNPSVGCLIVKDGVVVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAGE ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGEAARGATAYVTLEPCSHHGKTPPCAEALIAHGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG AG G V ITG + Sbjct: 121 EAGIEVDAGVLEAEGRRSLAGYLTRQTKSRPYVTLKLAVSADGMIGRAGEGQVAITGPEA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V LRA++DAILVGIGT ++DDP LT R GL+ SP+RI+LDP L L SK++ T Sbjct: 181 RAEVQALRAETDAILVGIGTAISDDPLLTVRTPGLEAQSPIRIVLDPSLALPLTSKLVAT 240 Query: 240 ALLAPVIIVTEN 251 A PVI+V Sbjct: 241 ARDVPVILVASE 252 >gi|226366358|ref|YP_002784141.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus opacus B4] gi|226244848|dbj|BAH55196.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus opacus B4] Length = 354 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 177/363 (48%), Gaps = 37/363 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 + DA M A+ + G TS NP+V +++ G + G G+T G PHAEV AL Sbjct: 10 SAADLDAA-MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVAL 68 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARG TA VTLEPC+H+GR+ PC+Q +++ G+ V V DP+ +G G + L Sbjct: 69 REAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAEALV 127 Query: 121 QKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V + ++ L A+L RQ R H+T K A + D A S ITG Sbjct: 128 SAGVEVTSGLRADDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPE 187 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKI 236 ++ +VH RA+ DAI+VG GTVLADDP LT R L H P+R+++ + +++ Sbjct: 188 ARERVHADRAKLDAIVVGTGTVLADDPRLTARTPDGSLAAHQPVRVVV-GLGDIPPGARV 246 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + + AP + RD+ ++L L T +L+EGG Sbjct: 247 LDDS--APTL----------------------RLRTRDVDEVLAALSEY--TDVLLEGGP 280 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A +F+ + VD I Y + +++G G + + F + G D+ L Sbjct: 281 RLAGAFLAAGRVDRIQAYLAPLILGAGASAVSEAGVHTIGGALRFRHESVETIGPDLLLS 340 Query: 354 YIG 356 + Sbjct: 341 LVP 343 >gi|120403674|ref|YP_953503.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii PYR-1] gi|119956492|gb|ABM13497.1| riboflavin biosynthesis protein RibD [Mycobacterium vanbaalenii PYR-1] Length = 333 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 109/349 (31%), Positives = 163/349 (46%), Gaps = 34/349 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+AA+ S G T NP V +I+ +DG + G G TA G PHAEV AL AGE A G Sbjct: 7 MAAAIEQSERVKGRTYPNPPVGAVILDRDGEIAGVGATAPPGGPHAEVVALRRAGERAVG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H+GR+PPC +++ GI V V DPD +G + + + Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALLDAGIAEVAFAVADPDPVAAGGAARLAESGVRVSAGV 126 Query: 130 MESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + ++ L +L +Q H+T K A S D A S IT ++ VH RA Sbjct: 127 LAADVTGGPLREWLHKQRTGMPHVTWKFATSVDGRSAAADGSSQWITSEAARADVHRRRA 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +DAI+VG GTV DDP LT RL L +H P+R+++ ++S D+ ++ VI Sbjct: 187 TADAIIVGTGTVFVDDPALTARLPDGSLADHQPLRVVVGKR-EISPDATVLNDDSRTMVI 245 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + +++ L R T + VEGG +A +F+ + Sbjct: 246 ------------------------RTHNPHEVIKALADR--TDVFVEGGPTLAGAFLRAG 279 Query: 307 LVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 ++D I+ Y + I++G + + + G DV L Sbjct: 280 VIDRILAYVAPILLGGPITAVDDVGVLSIAQAQRWRFDGMTAVGPDVLL 328 >gi|206602767|gb|EDZ39248.1| Riboflavin biosynthesis protein RibD [Leptospirillum sp. Group II '5-way CG'] Length = 388 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 185/363 (50%), Gaps = 17/363 (4%) Query: 7 DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE Sbjct: 4 DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63 Query: 66 EARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGAT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L GI Sbjct: 64 RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELRDGGI 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ + +L+ R +TLK A S D I A S I+G S Sbjct: 124 PVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALL 242 H LR + DAI+VG+GTVL D+P LT RL GL++ H P+RIILD + DS++ +T Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRIILDSLGRTPPDSRLFETLSE 243 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCDCRDLKK------LLTILVGRGVTSLLVEGG 295 +PV I+ + P +K +K LL L+ + +LLVEGG Sbjct: 244 SPVWIMAGENAPEDRIARLEEKGARTFRLPAGPGEKGLRLSSLLAELLENRLLTLLVEGG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSD 349 A V SF+ RLVDSI L + ++IG + ++ +R G D Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363 Query: 350 VCL 352 + + Sbjct: 364 LLI 366 >gi|168008266|ref|XP_001756828.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692066|gb|EDQ78425.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 94/369 (25%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ M A+ + GLT+ +P C+I + ++G G G AEVQA+EEA E+ Sbjct: 1 DSAHMLKAVELAESSNGLTAPHPKFGCVIARGRRIVGGGGLYGQGARSAEVQAVEEAREQ 60 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA+++LEP G A +++ G+ RVVV + P G+ + L + G+ V Sbjct: 61 ARGATAFLSLEPGDCGGDDAAIA-ALVQGGLGRVVVGMRHPLAHFRGKAIAALRRAGVRV 119 Query: 127 DRMME------------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + E + L R TLK A++ D I + S + Sbjct: 120 EVGGEDFGGGGAIEAALKACQSANAPLLYRVSHNLPMSTLKYAMTLDGKIAASSGHSAWV 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +S+++V RAQSDA++VG TV D+P LT RL G H P RI++ L D+ Sbjct: 180 SSAVSRHRVMKTRAQSDAVIVGGNTVRIDNPNLTTRLEG--GHQPDRIVMSRALDLPRDA 237 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + + +++ + + + + ++ D + ++ RG S+L E Sbjct: 238 NLWDVSKANTIVMTQKGSNLEFQKLLTSRGVEVVEFDFLSPRAVMEHCYMRGYLSVLWEC 297 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G ++ I +V ++ + + ++G +P+ E + + ++ SDV E Sbjct: 298 GGMLSAPAIQDGVVHKVLAFIAPKIVGGLRAATPVGELGMVQMTQALKL----SDVAFEQ 353 Query: 355 IGKNLCLQE 363 G ++ + Sbjct: 354 TGPDMLVTG 362 >gi|331012488|gb|EGH92544.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 249 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 140/245 (57%), Gaps = 11/245 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R + +I +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVP 244 Query: 232 LDSKI 236 LD+ Sbjct: 245 LDAPF 249 >gi|282859870|ref|ZP_06268958.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010] gi|282587273|gb|EFB92490.1| riboflavin biosynthesis protein RibD [Prevotella bivia JCVIHMP010] Length = 314 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 55/360 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ + L NP V +IV + G +IG G G HAEV A Sbjct: 1 MERQDIDEMYMRRCLQLATNGKLLAKPNPMVGAVIVSNEGRIIGEGYHVRCGEEHAEVNA 60 Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E +T YV+LEPCSH+G++PPCA II+ G++RVV DP +V GRG Sbjct: 61 FASVRKEDESLLSDSTIYVSLEPCSHFGKTPPCANLIIKKGVKRVVCGCVDPFSKVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 +Q + + GI + ++E+E + + ++T ++R +I LK A +++ +G+ G + I Sbjct: 121 IQRIREAGIEVTVGVLEAECLVLNNRFITFNTQERPYIILKWAQTENGFMGVK-GGVLKI 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +K VH LR++ DAILVG T + P+L R +P +++L Sbjct: 180 STPFTKMLVHKLRSECDAILVGRNTEEQESPQLNVR--DWSGRNPQKVVLSSTL------ 231 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 P I D+ LL L +L+VEG Sbjct: 232 ---------PTAI-------------------------HDIPSLLQQLYHDKCQTLIVEG 257 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GA +FI S + D I + S + GI +P L K+ +R++YFG +V Y Sbjct: 258 GATTLETFIRSGMYDEIRVEVSPTTV-REGIKAP----QLPKDVSVIRKEYFG-NVITTY 311 >gi|330899666|gb|EGH31085.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. japonica str. M301072PT] Length = 301 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 156/291 (53%), Gaps = 17/291 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ VV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTGVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLS 231 V LRAQS +L G TVLAD LT R + L +P+R+++D ++ Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVP 244 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLL 279 LD+ + ++VT + + + D DL++L+ Sbjct: 245 LDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLM 292 >gi|124514350|gb|EAY55863.1| riboflavin biosynthesis protein RibD [Leptospirillum rubarum] Length = 388 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 183/363 (50%), Gaps = 17/363 (4%) Query: 7 DAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D + FM+ AL + + NP V ++V+ G V+GRG G PHAEV AL EAGE Sbjct: 4 DEKVFMAMALDLAMMARDDVAPNPRVGAVVVRKGRVVGRGYHERPGLPHAEVLALREAGE 63 Query: 66 EARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGAT YV LEPC H R+PPC + I+ GI RVV+ + DP+ V+G+G+ L + G+ Sbjct: 64 RARGATLYVNLEPCCHLNKRTPPCTREILSSGIGRVVISLSDPNPHVNGKGILELREGGV 123 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + ++ + +L+ R +TLK A S D I A S I+G S Sbjct: 124 SVETGLLAPQAFAVNRGFLSLMKNGRPFVTLKGAASLDGQIATATGDSQWISGAPSLKYA 183 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALL 242 H LR + DAI+VG+GTVL D+P LT RL GL++ H P+R+ILD + DS++ +T Sbjct: 184 HQLRQEHDAIVVGVGTVLKDNPLLTTRLPGLRKVHHPVRVILDSLGRTPPDSRLFETISE 243 Query: 243 APVIIVTENDDPV-LALAFRKKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGG 295 +PV I+ P K L LL L+ + +LLVEGG Sbjct: 244 SPVWIMAGEHAPEDRVARLEDKGARTFRLPAGSDGKGLRLSSLLAALLESRLLTLLVEGG 303 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM------CVRRDYFGSD 349 A V SF+ RLVDSI L + ++IG + ++ +R G D Sbjct: 304 AQVNGSFLQERLVDSIRLVLAPLLIGGEDALGWIGGRSPKRLVDAFRFPGPLRTRRLGED 363 Query: 350 VCL 352 + + Sbjct: 364 LLI 366 >gi|260593448|ref|ZP_05858906.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319] gi|260534564|gb|EEX17181.1| riboflavin biosynthesis protein RibD [Prevotella veroralis F0319] Length = 331 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 101/369 (27%), Positives = 154/369 (41%), Gaps = 55/369 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M + D ++M L+ + + NP V +IV K+G +IG G G HAEV A Sbjct: 6 MKQADIDEKYMRRCLQLAYNGMLKAKPNPMVGAVIVSKEGRIIGEGYHVQCGKGHAEVNA 65 Query: 60 LEEAGE----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AT YV+LEPCSHYG++PPCA II G+ RVV DP V GRG Sbjct: 66 FASVKEVDSHLLHDATLYVSLEPCSHYGKTPPCADLIIRKGVHRVVCGCIDPFAEVHGRG 125 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ-----DNMIGMAGC 169 +Q L GI + ++E E ++T R ++ LK A + + Sbjct: 126 VQKLRDAGIEVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTMGNPAYIGYLPSKDY 185 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 + I+ +K VH LRA++DAILVG T + P+LT R +P +I+L Sbjct: 186 HPLNISTPFTKMLVHKLRAENDAILVGRTTNDLEHPQLTVR--EWSGKNPEKIVLSQQKS 243 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 S + +L L S Sbjct: 244 TS-------------------------------------SAQYPSPQSVLDHLYQEKKQS 266 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 L+VEGGA+ SF+++ L D I + +++ + G+ +P + N R + + + Sbjct: 267 LIVEGGASTLQSFLDAGLWDEIRVETGSLLV-DKGVKAP----QMPSNIHITRIEQWDDN 321 Query: 350 VCLEYIGKN 358 + Y + Sbjct: 322 KIVTYQREE 330 >gi|291006182|ref|ZP_06564155.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] Length = 385 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 113/369 (30%), Positives = 174/369 (47%), Gaps = 12/369 (3%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 + + M A+R + TS NP V C+++ DG G G G PHAEV+AL Sbjct: 15 TEAERWAMRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAA 74 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A G TA VTLEPC+H GR+ PC + + G+ RVV V+DP R + G + L+ Sbjct: 75 AGGRAAGGTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDP-TRDASGGAERLAAG 133 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ +V + E + +LT +R +T K A + D A S IT ++ Sbjct: 134 GVEVVGGLHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARR 193 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRA DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + Sbjct: 194 DAHALRAVHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSA 252 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 V++ +P A D DL L L RGV S+L+EGGA +A Sbjct: 253 PTLVVVSDRAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAG 312 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 F+ LVD ++ Y + + +G G+P + G D+ + + Sbjct: 313 FLAGGLVDRVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPE 372 Query: 358 ----NLCLQ 362 + CL+ Sbjct: 373 PRDLDACLR 381 >gi|300767117|ref|ZP_07077029.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494936|gb|EFK30092.1| riboflavin biosynthesis protein RibD [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 355 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 178/353 (50%), Gaps = 6/353 (1%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEAR 68 FM A+ ++ T NP V ++VKDG V+ +G Y G HAEV L + E+AR Sbjct: 5 FMQMAIDQAKLAGVATYQNPQVGAVLVKDGHVLAQGYHHYFGGDHAEVDVLRQVTPEQAR 64 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 GAT +VTLEPCSHYG++PPC+ I+ GIR+VV+ DP V G+G Q+L G+ +V Sbjct: 65 GATLFVTLEPCSHYGKTPPCSARIVAAGIRQVVIGQLDPHPIVGGKGRQYLLNHGVDVVT 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + + + Y V++R ITLK A++ D I ++ S LR Sbjct: 125 GCLTDKVRALNPHYNHFYVQQRPWITLKTAITLDGKINTETPTRTLVSNHASYIDSQCLR 184 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +Q AIL+G T+ DDP+L RL + + P+R+++ ++L+ ++++ AP + Sbjct: 185 SQFQAILIGERTLTIDDPQLAVRLTAMVQ-PPVRLVVLNTSTVALNHRLVQDG-QAPTWL 242 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + N++++ + + V +G SLLVEGGA + F+ + L Sbjct: 243 LCRQAAASDDQLRNSPNVHVL-IGNWTPAAISQLCVEQGWQSLLVEGGAHLQAEFVAAEL 301 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIGKNL 359 +D + Y + ++IG G+P+ + F G+++ L + K + Sbjct: 302 IDEWVSYIAPMMIGGTGLPAVTGAAAMTPLTFEQPTVTCLGTNIRLRAVRKEV 354 >gi|111024118|ref|YP_707090.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1] gi|110823648|gb|ABG98932.1| riboflavin biosynthesis protein RibD [Rhodococcus jostii RHA1] Length = 350 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 115/363 (31%), Positives = 180/363 (49%), Gaps = 37/363 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL 60 + DA M A+ + G TS NP+V +++ G + G G+T G PHAEV AL Sbjct: 6 SAADLDAA-MQIAIGAAESARGFTSPNPAVGAVVLDAAGRIAGVGMTQPPGGPHAEVVAL 64 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARG TA VTLEPC+H+GR+ PC+Q +++ G+ V V DP+ +G G + L Sbjct: 65 REAGDAARGGTAVVTLEPCNHHGRTGPCSQALLDAGVVAVHYAVGDPNPEAAG-GAETLI 123 Query: 121 QKGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ V + ++ L A+L RQ R H+T K A + D A S ITG Sbjct: 124 SAGVEVTSGLRAQDVERGPLRAWLHRQRTGRPHVTWKYAATLDGRSAAADGTSQWITGPE 183 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKI 236 ++ +VH RA+ DAI+VG GTVLADDP LT R+ L H P+R+++ + D+++ Sbjct: 184 ARERVHADRAKLDAIVVGTGTVLADDPRLTARMPDGSLAAHQPVRVVV-GLGDIPADARV 242 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 + + AP ++ D+ ++L L T +L+EGG Sbjct: 243 LDDS--APTLL----------------------LRTHDVDEVLAALAEY--TDVLLEGGP 276 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +A +F+ + VD I Y + +++G G + + F + GS++ L Sbjct: 277 RLAGAFLAAGRVDRIQAYLAPLILGAGTSAVAEAGVHTIDGALRFRHESVETIGSELLLS 336 Query: 354 YIG 356 + Sbjct: 337 LVP 339 >gi|312131512|ref|YP_003998852.1| riboflavin biosynthesis protein ribd [Leadbetterella byssophila DSM 17132] gi|311908058|gb|ADQ18499.1| riboflavin biosynthesis protein RibD [Leadbetterella byssophila DSM 17132] Length = 322 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 167/341 (48%), Gaps = 35/341 (10%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE--A 67 +M AL + S NP V C+IV + +IG G G PHAEV A++ ++ Sbjct: 3 YMKRALELAALGREWVSPNPMVGCVIVHNDKIIGEGFHRKYGQPHAEVNAVDSVEDKSLL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 +T YVTLEPC+H+G++PPCA+ +I+ +++VVVC DP +V+G+G+ L GI + Sbjct: 63 SESTVYVTLEPCAHFGKTPPCAELLIKHKVKKVVVCNLDPFPQVAGKGITMLKNAGIDVE 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +++ EG+ + R ++ LK A S+D I G + I+ I+ QVH Sbjct: 123 VGLLQEEGEELNKRFFKRHRTGLPYVILKWAESKDGFISAEGGKPIKISHPITDIQVHRW 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA+ DAIL+G T D+P+L R ++ P IIL + L +K K Sbjct: 183 RAEEDAILIGKNTADLDNPQLNVRYW-TEDKQPKPIILGQPTRQDLRAKGAK-------- 233 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I+ + ++L ++L L G+ S+LVEGG + SFI Sbjct: 234 ---------------------IFPNGKNLTEILRQLAQDGIQSILVEGGTKIHTSFIEEG 272 Query: 307 LVDSIILYRSQIVIGEGGIPSP-LEEGYLEKNFMCVRRDYF 346 L D I + + I I G+ +P L +G + + R D+ Sbjct: 273 LFDEIRVIQGDIEI-LNGVKAPQLPDGLILTDHHTYRNDHI 312 >gi|134099429|ref|YP_001105090.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] gi|133912052|emb|CAM02165.1| riboflavin-specific deaminase [Saccharopolyspora erythraea NRRL 2338] Length = 364 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 113/362 (31%), Positives = 172/362 (47%), Gaps = 12/362 (3%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+R + TS NP V C+++ DG G G G PHAEV+AL AG A G Sbjct: 1 MRRAIRLTADPPRRTSPNPYVGCVVLDADGRFAGEGHHRGAGHPHAEVEALAAAGGRAAG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TA VTLEPC+H GR+ PC + + G+ RVV V+DP R + G + L+ G+ +V Sbjct: 61 GTAVVTLEPCAHRGRTGPCTEALSAAGVSRVVFAVEDP-TRDASGGAERLAAGGVEVVGG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E + +LT +R +T K A + D A S IT ++ H LRA Sbjct: 120 LHREEAERHNEFWLTSVRRERPFVTWKFAGTIDGRSAAADGSSRWITAAQARRDAHALRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DA+LVG GT+ AD+P L R +G+ P+R++LD ++ ++++ + V++ Sbjct: 180 VHDAVLVGGGTLRADNPHLGLR-HGVVGEPPLRVVLDSAGRIKPGARVLDGSAPTLVVVS 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 +P A D DL L L RGV S+L+EGGA +A F+ LV Sbjct: 239 DRAGEPRGLGAAAGTLAVPSTEDGLDLAALSERLFARGVRSVLLEGGARLAAGFLAGGLV 298 Query: 309 DSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK----NLC 360 D ++ Y + + +G G+P + G D+ + + + C Sbjct: 299 DRVVAYLAPMFLGGAGLPVVTDIGVASMAEAARMRVEEVRQLGPDLRVVMQPEPRDLDAC 358 Query: 361 LQ 362 L+ Sbjct: 359 LR 360 >gi|225454196|ref|XP_002273879.1| PREDICTED: similar to cytidine/deoxycytidylate deaminase family protein [Vitis vinifera] Length = 379 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 161/365 (44%), Gaps = 24/365 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG Sbjct: 26 EDDGFYMRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAG 85 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A ATAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI Sbjct: 86 DLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGI 145 Query: 125 IVDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E E K AY+ + + + +TL+ ++S + I V G V Sbjct: 146 EVTVAVEEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQLV 205 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 + DAI++ TV + G P+ I++ I T + Sbjct: 206 Q----EYDAIILSPTTVTEKFSFPASQEPGAN--QPLHILIAKSPISPNQIPIPHTEATS 259 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF- 302 VII +N+ V +K I + D +L +L +G+ S+L++ + +F Sbjct: 260 KVIIFADNETAVEPEMV-QKGIETVVLDQINLNAVLEYCKRQGLCSILLD----LRGNFG 314 Query: 303 ---------INSRLVDSIILYRSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 + L+ +++ E G+P L+ + V Sbjct: 315 YFEDLLKQSLEENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVV 374 Query: 352 LEYIG 356 LE Sbjct: 375 LEGYP 379 >gi|222151702|ref|YP_002560858.1| hypothetical protein MCCL_1455 [Macrococcus caseolyticus JCSC5402] gi|222120827|dbj|BAH18162.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402] Length = 341 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 98/351 (27%), Positives = 164/351 (46%), Gaps = 18/351 (5%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 +++ A +W G T NP+V C+IVKD ++G G G HAEV A+ AG A+G Sbjct: 2 YINKAFELVKWTEGQTGMNPAVGCVIVKDDRIVGIGAHLTEGEAHAEVNAIHMAGSHAQG 61 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 AT Y TLEPCSH+G++PPC + I+ GI +VV D G++++ + I V+++ Sbjct: 62 ATLYCTLEPCSHHGKTPPCTEKIVAAGISKVVYAASD---VTLSSGVKYMRSESIEVEKV 118 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 F + T + ++T+K+A + D S IT S+ H +R + Sbjct: 119 ECRAIDDFYAPFFTSKTSSLPYVTIKMATTVDGKTADDESISKWITNEKSRAHAHEVRYR 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI+VG T D P L RL ++ ++I+ + L+++ + +IIV+ Sbjct: 179 MDAIMVGYNTYKKDIPTLDARL--YKDKRIKKVIV-TNGPFVLNTQDDNDYDRSRLIIVS 235 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 A+ + + +I+ + +L L + +LL+EGG +FI ++ + Sbjct: 236 -------AIEQHIEGVTVIHVPHLSPEHILKALYNERIRNLLIEGGMQTIRTFIEAKYYN 288 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 I Y + ++G L L +F V + F DV L Y Sbjct: 289 EIHHYIAPKLLGGTSKHQFLTTDTLSSMRDMTHFNLVSVNQFDDDVLLIYR 339 >gi|332187003|ref|ZP_08388744.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17] gi|332013013|gb|EGI55077.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. S17] Length = 313 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 125/352 (35%), Positives = 168/352 (47%), Gaps = 46/352 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AAL + +G T+ NP+V C++V+DG VIGRG T GG PHAE AL EAGE A GA Sbjct: 1 MGAALALAGRGIGRTAPNPNVGCILVRDGRVIGRGWTQPGGRPHAEAMALAEAGESACGA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPC+H R P C +I G+ +V + DPD R +G+G GI + Sbjct: 61 TAYVTLEPCAHVSTRGPACTDLLIAAGVAHIVAAMGDPDPRTNGQGFDRARAAGIAVTTG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + ESE + + +LTR+ ++R +TLK+A S D I S ITG ++ HL R+ Sbjct: 121 ICESEARAMIAGFLTRRAKERPFVTLKLATSLDGRIARPDGTSRWITGPQARAHTHLERS 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + +AILVG GT+ AD P L RL GL+ SP RI+L Sbjct: 181 RHEAILVGRGTLQADSPRLDVRLPGLETRSPRRILLSRT--------------------- 219 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 +P I + GV L+VEGGA A +F+ + LV Sbjct: 220 ---SEPGWETISSPHAITHLA----------------GVDRLMVEGGAQTASAFLAADLV 260 Query: 309 DSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 D ++LYR+ I+IGEG + G D Y Sbjct: 261 DRLLLYRAPILIGEGRAALGDIGLAALADAHGRWRLRDSRMLGIDRMEVYER 312 >gi|195640478|gb|ACG39707.1| riboflavin biosynthesis protein ribD [Zea mays] Length = 392 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 165/357 (46%), Gaps = 23/357 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 47 DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183 + + E+ + AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYS---- 222 Query: 184 HLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L + D +++ LA L R G P+ II+ L + Sbjct: 223 -QLMKEYDGVIISSD--LAKMSALPLSREAGTN--QPLCIIIAQGESSRLHIPSLSQEHA 277 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---A 296 + I++ D PV + + DL+ +L +L RG+ S+LV E G A Sbjct: 278 SRAIVLA--DSPVTV---EPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFA 332 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ + F +LV +++ + G+ + G + V LE Sbjct: 333 SLLNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLE 389 >gi|84496639|ref|ZP_00995493.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649] gi|84383407|gb|EAP99288.1| riboflavin biosynthesis protein RibD [Janibacter sp. HTCC2649] Length = 341 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 170/364 (46%), Gaps = 34/364 (9%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D ++M AL + + NP V C++V DG ++ G G PHAE AL Sbjct: 5 STTDEQWMLRALVVGAFG-PESDANPRVGCVLVDPDGALVAEGWHQGAGTPHAEAAALAA 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A+G TAYVTLEPC+H GR+ PC+ + G+ RVV V DP+ + G WL+++ Sbjct: 64 AGERAKGCTAYVTLEPCNHTGRTEPCSHALAAAGVSRVVYAVSDPNA-SAAGGAAWLAER 122 Query: 123 GIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++E+E ++L R R +T K+A + D A S ITG S+ Sbjct: 123 GVATEGGLLEAEATALNRSWLHRIRTGRPWVTWKLAATLDGRSAAADGTSQWITGPESRQ 182 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKT 239 VH RA+ AI+VG GT L DDP LT R L +H P+R+I+ L+ D+++ Sbjct: 183 DVHEQRARCGAIIVGTGTALTDDPRLTARRADGTLHDHQPLRVIMGLR-DLAPDARVFDD 241 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + ++ R ++++ L R + + +EGG VA Sbjct: 242 SAQT------------------------VHLRTRQPREVVAYLAEREIHHVWLEGGPTVA 277 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +F+ LVD I+ Y + +++G G + G D+ + I Sbjct: 278 AAFMADGLVDEIVAYIAPVLLGRGRQSVSDLGITTIADALRLEPTDTRIIGHDIRITTIL 337 Query: 357 KNLC 360 + Sbjct: 338 EESR 341 >gi|212275115|ref|NP_001130669.1| hypothetical protein LOC100191772 [Zea mays] gi|194689788|gb|ACF78978.1| unknown [Zea mays] Length = 392 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 165/357 (46%), Gaps = 23/357 (6%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA +M + +R G TS NP V C+IV+DG V+G G G PHAEV AL +AG Sbjct: 47 DDAHYMRRCVELARKAAGHTSPNPMVGCVIVRDGRVVGEGFHPKAGQPHAEVFALRDAGN 106 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 107 LAENATAYVSLEPCNHYGRTPPCTEALINAKVKEVVVGMTDPNPIVASKGIEKLQGAGIS 166 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI-GMAGCGSVPITGFISKNQV 183 + + E+ + AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 167 VRVGVEEALCRKLNEAYIHRMLTGKAFATLRATLSMNGIITNQIGKGADQSGGYYS---- 222 Query: 184 HLLRAQSDAILVGIGTVLADDPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L + D +++ LA L R G P+ II+ L + Sbjct: 223 -QLMKEYDGVIISSD--LAKMSALPLSREAGTN--QPLCIIIAQGESSRLHIPSLSQEHA 277 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG---A 296 + I++ D PV + + DL+ +L +L RG+ S+LV E G A Sbjct: 278 SRAIVLA--DSPVTV---EPAGVEVAVFRQIDLESILQLLAQRGLCSVLVDFREAGESFA 332 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ + F +LV +++ + G+ + G + V LE Sbjct: 333 SLLNDFQEDKLVQKVVVEVLPFWLASDGLSNLAFGGSQSFPLKNLELRDVNGSVLLE 389 >gi|326520824|dbj|BAJ92775.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 468 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 103/357 (28%), Positives = 169/357 (47%), Gaps = 21/357 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG Sbjct: 122 DMDAHYMRRCVELARTAAGHTSPNPMVGCVIVREGKVVGEGFHPKAGQPHAEVFALRDAG 181 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A ATAYV+LEPC+HYGR+PPC++ +I+ ++ VVV + DP+ V+ +G++ L GI Sbjct: 182 DLAENATAYVSLEPCNHYGRTPPCSEALIKAKVKEVVVGMTDPNPIVASKGIEKLRNAGI 241 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182 + + E+ AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 242 DVRVGVEEALCLRLNEAYIHRMLTGKAFATLRATLSMNGIVINQIGSGTDQPGGYYS--- 298 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L + D +++ A + R G P+ II+ LD + Sbjct: 299 --QLAKEYDGVIISSDMAKATALPM-SREAGA--KQPLYIIIAQGQGSKLDIPFLDEESA 353 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE----GG--A 296 + I++ D PV +++ D +L+ +L +L RG+ S+LV+ GG A Sbjct: 354 SNAIVLA--DSPVTV---EPAGVSVSVLDQMNLESILQLLADRGLCSVLVDFRDAGGVLA 408 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 ++ F +LV ++L S + + G G V + LE Sbjct: 409 SLLSKFQEDKLVQKVVLELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLE 465 >gi|307293539|ref|ZP_07573383.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum L-1] gi|306879690|gb|EFN10907.1| riboflavin biosynthesis protein RibD [Sphingobium chlorophenolicum L-1] Length = 317 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 135/353 (38%), Positives = 180/353 (50%), Gaps = 45/353 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ S GL++ NP+V CLIVK+G V+GRG T GG PHAE QAL+EA E ARGA Sbjct: 1 MAAAIALSERGRGLSTPNPNVGCLIVKEGHVVGRGWTQKGGRPHAEAQALDEAMERARGA 60 Query: 71 TAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPC H R P CA + G+RRVV+ + DPD R G+G WL Q+GI VD Sbjct: 61 TAYVTLEPCFHLSSRGPRCADLMARAGVRRVVIALRDPDPRTDGQGADWLRQRGIAVDMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M E + ++ RQ R +TLK+ +S D I +A S ITG ++ H+ RA Sbjct: 121 LMAQEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPDARAHAHVERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ SP R++L H Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRSPRRVLL-SHGDAP----------------- 222 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 +I D+ L V LLVEGGA A +F+ + LV Sbjct: 223 --------------DGWEVIAAP-EDIAALP------QVDHLLVEGGAQAAAAFLRADLV 261 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D ++LYR+ I+IG+G G + + G+D Y+ Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLTDLADAHGRWRLDEERRLGNDRLEVYLRN 314 >gi|229495189|ref|ZP_04388924.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis ATCC 35406] gi|229317632|gb|EEN83530.1| riboflavin biosynthesis protein RibD [Porphyromonas endodontalis ATCC 35406] Length = 342 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 163/340 (47%), Gaps = 16/340 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ D +M L + G TS NP V ++V ++G G G PHAEV Sbjct: 1 MTANDTLYMQRCLDLAALATGYTSPNPLVGAILVHQDRIVGEGYHHRAGEPHAEVNCFAS 60 Query: 63 AGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E +T YV+LEPCSHYG++PPCA+ +++ + RVVV + DP V+GRG+ Sbjct: 61 VRPEDEKWIAQSTLYVSLEPCSHYGKTPPCAELVLQKRVPRVVVAMQDPFPEVAGRGIAL 120 Query: 119 LSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVP 173 L KG+ V+ + E + +LT + R +TLK A S+D I A Sbjct: 121 LRSKGVEVEVGVLEEEARWLNRFFLTAVEKNRPWVTLKWAQSRDGFIDRVREDASQRPEV 180 Query: 174 ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD 233 + I + VH LR DAILVG T+ D+P LT R SP ++LD L Sbjct: 181 FSSPIRQRYVHYLRHCHDAILVGRRTIQLDNPSLTNRF--WWGTSPQPVVLDSEGVLCHQ 238 Query: 234 S-KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 + K+ + + P IV+ + +N I + LL L R + SLLV Sbjct: 239 AYKVNQNSTSKPWFIVSPSA---FRSQPLPENCIAIERSEHFIASLLETLASRKIQSLLV 295 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 EGGA +F++S L D++ S ++ E G+ +P+ G Sbjct: 296 EGGAQTLQAFLDSGLYDAVDREVSPRLLYE-GVAAPIFSG 334 >gi|19552809|ref|NP_600811.1| pyrimidine reductase [Corynebacterium glutamicum ATCC 13032] gi|62390479|ref|YP_225881.1| bifunctional riboflavin-specific deaminase/reductase [Corynebacterium glutamicum ATCC 13032] gi|21324366|dbj|BAB98990.1| Pyrimidine reductase, riboflavin biosynthesis [Corynebacterium glutamicum ATCC 13032] gi|41325816|emb|CAF21605.1| PUTATIVE BIFUNCTIONAL RIBOFLAVIN-SPECIFIC DEAMINASE/REDUCTASE [Corynebacterium glutamicum ATCC 13032] Length = 328 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 165/356 (46%), Gaps = 41/356 (11%) Query: 12 SAALRFSR----WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + AL + G TS NP V +I+ DG V+G G TA G PHAEV AL AG Sbjct: 4 AHALDLAHHVSDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGVR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G TA VTLEPC+HYGR+ PC++ +++ GI V DP +G G +L++ G+ Sbjct: 64 ANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAGVDT 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E L +L R H+TLK A + D G S ITG ++ VH Sbjct: 123 HFL--DERIRALEPWLVATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R++ DAI+VG GT L D+P LT R + GL E+ P R+++ ++ DS + + Sbjct: 181 RSKRDAIIVGTGTALTDNPSLTARTDTGLYENQPRRVVIGSR-EVPADSNLARLGYE--- 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + L+ L +G +L+EGG +A + + Sbjct: 237 -------------------------QYAGIPEALSALWDKGCRDILIEGGPTLAGAALRL 271 Query: 306 RLVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358 +VD + Y + ++G G I P E + F GSDV +E + K Sbjct: 272 GIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327 >gi|332299428|ref|YP_004441349.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica DSM 20707] gi|332176491|gb|AEE12181.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica DSM 20707] Length = 343 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 15/340 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 7 STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66 Query: 62 EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 EE R AT YV+LEPC+HYG++PPCA+ + + RVV+ + DP +V GRG+ Sbjct: 67 SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAKLRPARVVIAMLDPFAKVDGRGVA 126 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--- 173 L + GI + +E E +L Q R ++TLK A S D+ I + Sbjct: 127 RLREAGIEVSIGCLEQEAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186 Query: 174 -ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS- 231 + + + VH LR+ DAILVG T DDP LT R P+R +L H +L Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSG--SGGQPIR-LLWCHSRLPR 243 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + ++++ A ++++ + +++ + ++ LLT+L +G+ SLL Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPPHVSCLATTGE-VRDLLTLLHSQGIESLL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 VEGGA V F+++ L D I + + + + G+P+P E Sbjct: 303 VEGGAQVQQRFLDAGLYDEINVEHAPVEL-HEGVPAPHLE 341 >gi|220904884|ref|YP_002480196.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869183|gb|ACL49518.1| riboflavin biosynthesis protein RibD [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 385 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 98/379 (25%), Positives = 158/379 (41%), Gaps = 26/379 (6%) Query: 3 VSSFDAR-FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 +S D FM A+ ++ T NP V ++V+DG ++ RG G HAEV L Sbjct: 1 MSELDYTPFMREAIALAQQGRWKTCPNPMVGAVLVRDGHIVARGWHRAFGLDHAEVDCLN 60 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G + T VTLEPC H G++PPC ++ GI+++VV + DP+ G + Sbjct: 61 DAAAQGVDPSECTLVVTLEPCCHQGKTPPCTDAVLRAGIKKIVVGLSDPNPEACGGACRL 120 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 +++ + + + +L Q +R ++ LK+A + D I S I+ Sbjct: 121 RESGLDVIEGVCADACRDLVADFLVWQQAQRPYVILKMAATLDGRIATRKGESQWISSEE 180 Query: 179 SKNQVHLLRAQS----DAILVGIGTVLADDPELTCRL---NGLQEHSPMRIILDPHFKLS 231 S+ +V LRA A+LVG GT ADDP LT R P+ +L Sbjct: 181 SRQEVQRLRAGIGRCGGAVLVGGGTFRADDPRLTVRPINDGEPLGPQPLACVLTSRLPQP 240 Query: 232 -LDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVG 284 D ++K V + A A R + ++ DL +L + Sbjct: 241 DADFYLLKERPQQTVFLASPAAAASTTAKALRDMGVRVLSLGPSLRGGPDLTHMLRTMRE 300 Query: 285 R-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 LL EGG +A S + + +VD L+ + +++G+ PL G + R Sbjct: 301 ELDCPYLLCEGGGHLALSLLEAGVVDEFRLHMAPMILGDADA-QPLFSGRAPLSLDEALR 359 Query: 344 DYF------GSDVCLEYIG 356 G D+ +E Sbjct: 360 MRVTGSHISGGDIHIELRP 378 >gi|326382172|ref|ZP_08203864.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL B-59395] gi|326198902|gb|EGD56084.1| riboflavin biosynthesis protein RibD [Gordonia neofelifaecis NRRL B-59395] Length = 339 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 111/355 (31%), Positives = 155/355 (43%), Gaps = 36/355 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ S G T+ NP V +++ DG + G G T G PHAEV AL AGE ARG Sbjct: 10 MRRAIAESEAAQGFTTPNPPVGAVVLDADGEIAGVGRTQPPGGPHAEVMALRAAGERARG 69 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC H GR+ PC Q ++ GI V V DP+ +G G Q L G+ V Sbjct: 70 GTAVVTLEPCDHTGRTGPCTQALLSAGIADVHFAVADPNPDAAG-GAQTLRAAGVDVHPG 128 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + L +L RQ R +T KIA + D I S ITG ++ H +R Sbjct: 129 VLESEARSGPLKYWLFRQKTGRPFVTAKIAATADGRIAAPDGSSQWITGPQAREHAHEVR 188 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DAI+VG GTVL DDP LT R + +H P R++L + + ++ V Sbjct: 189 GRLDAIVVGTGTVLVDDPSLTARRPDGRLLDHQPTRVVL--GLREVPAAARVRDGSAPFV 246 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + RD + ++ L +LVEGG V +F+ + Sbjct: 247 HVAS-----------------------RDPRAVVDALPD--ALHVLVEGGPEVIGAFLAA 281 Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 LVD I Y + ++G G + F G D+ L + Sbjct: 282 GLVDEIHAYLAPTILGAGRAAVSDESVATLAQAHRFRRSGLLELGEDILLILEPR 336 >gi|318057036|ref|ZP_07975759.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actG] Length = 364 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 170/353 (48%), Gaps = 14/353 (3%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + G L G+ + + Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAAGVDVEHGL 129 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E A+LT R H+T K A S D A S IT ++ VH LRA Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248 DA+LVG GT DDP L R P+R++LD + ++++ A AP ++ Sbjct: 190 CDAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA--APTLVA 246 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 +D P A + DL LL L R V +L+EGGA +A +F+ + Sbjct: 247 LADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYT 306 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 D ++ Y + +++G G P+ L + + +R D G D+ + + Sbjct: 307 DRVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357 >gi|326331206|ref|ZP_08197500.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium Broad-1] gi|325950976|gb|EGD43022.1| riboflavin biosynthesis protein RibD [Nocardioidaceae bacterium Broad-1] Length = 352 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 144/319 (45%), Gaps = 31/319 (9%) Query: 11 MSAALRFSRWHVGL---TSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M AL + T NP V C+++ DG +I G G PHAEV AL +AGE Sbjct: 11 MRRALDLAAAIGAPGPATYPNPRVGCVLLGADGSMIAEGYHRGPGTPHAEVDALAKAGEA 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA VTLEPC+H GR+ PC+Q +IE G+ RVV DP+ +G + Sbjct: 71 ARGATAVVTLEPCNHTGRTGPCSQALIEAGVARVVYAQSDPNPVAAGGAATLKQAGVEVE 130 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +E + + +R ++T K A + D A S ++ ++ H L Sbjct: 131 QGLYAAEARELNRVWTRAAELQRPYVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHKL 190 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA SD +LVG TV DDP LT R + P+R+++ L D +I + Sbjct: 191 RALSDTMLVGTNTVAVDDPALTVRDLEDRPVGVQPLRVVMGER-DLPEDRRIFDAQAPS- 248 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ RD L L R + +EGG +A +F+ Sbjct: 249 -----------------------LHLRTRDPHSALAALWERERRHVFLEGGPTLAAAFLE 285 Query: 305 SRLVDSIILYRSQIVIGEG 323 + LVD I++Y + ++G G Sbjct: 286 AGLVDEIVVYVAPFLLGAG 304 >gi|116251387|ref|YP_767225.1| riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae 3841] gi|115256035|emb|CAK07116.1| putative riboflavin biosynthesis protein [Rhizobium leguminosarum bv. viciae 3841] Length = 448 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 146/253 (57%), Positives = 187/253 (73%), Gaps = 1/253 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D RFM+AA+R SRWH+G T+TNPSV CLIVKDG+++GR VTA G PHAE QAL Sbjct: 1 MSITPHDERFMAAAIRLSRWHLGRTATNPSVGCLIVKDGVIVGRAVTALSGRPHAETQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EA ARGATAYVTLEPCSH+G++PPC++ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEASALARGATAYVTLEPCSHHGKTPPCSEALIAYGVARVVISVTDPDPRVSGRGIAMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI VD ++E+EG+ L AYLTRQ + R ++TLK+AVS D MIG G G V ITG ++ Sbjct: 121 EAGIEVDAGVLEAEGRHSLAAYLTRQTKNRPYVTLKLAVSADGMIGREGEGQVAITGPLA 180 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + Q LRA++DAILVGIGT +ADDP LT R GL+ SP+RI+LDP L L SK+++T Sbjct: 181 RAQAQALRAETDAILVGIGTAIADDPLLTVRSPGLESQSPIRIVLDPFLALPLTSKLVET 240 Query: 240 ALLAPVIIVTEND 252 A PVI+V + Sbjct: 241 ARQVPVIVVASEE 253 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 37/101 (36%), Positives = 52/101 (51%) Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + +++C+ + LL L RG++SLLVEGGA A F+ + LVD + LY+ Sbjct: 346 RRAALEAAGVEVVHCNPYHPEVLLPALATRGISSLLVEGGAKTARLFLKAGLVDRVQLYQ 405 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + VIGE GI SPL+ + F FG D EY Sbjct: 406 APAVIGERGIESPLDATDIPSGFAHTGTLLFGEDRLDEYER 446 >gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu] Length = 257 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 142/257 (55%), Gaps = 8/257 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVKDG VIG G T G HAEVQAL++ Sbjct: 2 FSDTDFAHMQRALALAARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARSRGHDVAGSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDD 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 ++ H RA++ AIL GIGTV DDP+LT R P R+++D +L LD+++++ Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDDPQLTVR-GIDTPRQPRRVLVDSRLELPLDARLLE 240 Query: 239 TALLAPVIIVTENDDPV 255 AP++I D Sbjct: 241 G---APLLIFCGRLDAA 254 >gi|313885967|ref|ZP_07819705.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica PR426713P-I] gi|312924497|gb|EFR35268.1| riboflavin biosynthesis protein RibD [Porphyromonas asaccharolytica PR426713P-I] Length = 343 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 167/340 (49%), Gaps = 15/340 (4%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 7 STSPSDQIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWR 66 Query: 62 EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 EE R AT YV+LEPC+HYG++PPCA+ + RVV+ + DP +V GRG+ Sbjct: 67 SVPEELRSVIGKATWYVSLEPCAHYGKTPPCAELLAGLRPARVVIAMLDPFAKVDGRGVA 126 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP--- 173 L + GI + +E +L Q R ++TLK A S D+ I + Sbjct: 127 RLREAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPY 186 Query: 174 -ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS- 231 + + + VH LR+ DAILVG T DDP LT R P+R +L H +L Sbjct: 187 TFSSPLRQRSVHRLRSLHDAILVGHHTAELDDPLLTNRSG--SGGQPIR-LLWCHSRLPR 243 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + ++++ A ++++ + +++ + ++ LLT+L +G+ SLL Sbjct: 244 PELRMLQDASAPTILLLPPALLEQVTDGQYPTHVSCLATTGE-VRDLLTLLHSQGIESLL 302 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 VEGGA V F+++ L D I + + + + G+P+P E Sbjct: 303 VEGGAQVLQRFLDAGLYDEINVEHAPVEL-REGVPAPHLE 341 >gi|215430296|ref|ZP_03428215.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis EAS054] gi|289753491|ref|ZP_06512869.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054] gi|289694078|gb|EFD61507.1| riboflavin-specific deaminase [Mycobacterium tuberculosis EAS054] Length = 339 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 168/364 (46%), Gaps = 40/364 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q ++T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPYVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + + ++L L R T +L+EGG Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A +F+ + ++ I+ Y + I++G P + N R F S +E +G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330 Query: 358 NLCL 361 +L L Sbjct: 331 DLLL 334 >gi|31792603|ref|NP_855096.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis AF2122/97] gi|121637339|ref|YP_977562.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215426746|ref|ZP_03424665.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T92] gi|224989814|ref|YP_002644501.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|260186348|ref|ZP_05763822.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis CPHL_A] gi|260200464|ref|ZP_05767955.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis T46] gi|289442854|ref|ZP_06432598.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis T46] gi|289447005|ref|ZP_06436749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CPHL_A] gi|289749967|ref|ZP_06509345.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis T92] gi|31618192|emb|CAD94305.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) [Mycobacterium bovis AF2122/97] gi|121492986|emb|CAL71457.1| Probable bifunctional riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772927|dbj|BAH25733.1| putative riboflavin biosynthesis protein [Mycobacterium bovis BCG str. Tokyo 172] gi|289415773|gb|EFD13013.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis T46] gi|289419963|gb|EFD17164.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CPHL_A] gi|289690554|gb|EFD57983.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis T92] Length = 339 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 168/364 (46%), Gaps = 40/364 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + + ++L L R T +L+EGG Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A +F+ + ++ I+ Y + I++G P + N R F S +E +G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330 Query: 358 NLCL 361 +L L Sbjct: 331 DLLL 334 >gi|312977170|ref|ZP_07788918.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus CTV-05] gi|310895601|gb|EFQ44667.1| riboflavin biosynthesis protein RibD [Lactobacillus crispatus CTV-05] Length = 355 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 171/351 (48%), Gaps = 8/351 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+ Sbjct: 1 MILMEKDNFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAI 60 Query: 61 EEAG-EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + E+ +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L Sbjct: 61 SKLTPEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAKL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + G+ + ++ + Y IT+K A S DN + M PIT Sbjct: 121 QENGVQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQA 179 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 QVH RA AI++G T + DDP L R N ++ P+RII+D +L ++ Sbjct: 180 VYQQVHSERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRL 237 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + P I T N + F I II+ ++++ L + + S+ VEGG + Sbjct: 238 LSDTNPTWIFTPNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTL 296 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 + +N V+ +I Y + I +G+ G+ + + V++ FG++ Sbjct: 297 EKAIMNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNN 345 >gi|296395033|ref|YP_003659917.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM 44985] gi|296182180|gb|ADG99086.1| riboflavin biosynthesis protein RibD [Segniliparus rotundus DSM 44985] Length = 343 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 121/364 (33%), Positives = 175/364 (48%), Gaps = 40/364 (10%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57 MPV D FM A+ SR G TS NP V ++V DG ++GRG T G HAEV Sbjct: 1 MPVRDLPVDEAFMREAIAVSRLARGRTSPNPPVGAVLVSPDGQIVGRGATRPPGQEHAEV 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL +AGE ARGATAYVTLEPC+H GR+ PCA+ +++ G+ VV V DP+ R G Sbjct: 61 VALAQAGERARGATAYVTLEPCNHVGRTGPCARALVDAGVAAVVCAVPDPNQRSGGGAKT 120 Query: 118 WLSQK-GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + G+ V + L +L Q R H+T K A + D S ITG Sbjct: 121 LEAAGVGVRVGVLAHEARTGPLREWLHAQRTGRPHVTWKFAATLDGRSAARDGSSQWITG 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 + VH +RA+ DAI+VG GT LADDP LT RL L P R+++ +L + Sbjct: 181 PQIRKSVHAVRAELDAIIVGTGTALADDPWLTARLPDGSLAPRQPTRVVV-GMTELPRGA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +++ + AP ++ RD + L +L +L+EG Sbjct: 240 RVLDGS--APTVLA----------------------KTRDPAEALAMLGD--AVHVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSD 349 G +A +F+ + LVD + + + +++G G P+ L + + F G D Sbjct: 274 GPTLAAAFLRAGLVDLVQAHIAPVLLGAG--PAALGDLGIATLADALRFTVEEVRQVGRD 331 Query: 350 VCLE 353 V ++ Sbjct: 332 VLVQ 335 >gi|23008993|ref|ZP_00050209.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 284 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 114/274 (41%), Positives = 155/274 (56%), Gaps = 2/274 (0%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 + D R M AL R ++G T NPSV ++V +G ++G+ VTA GG PHAE AL Sbjct: 10 SQHALDRRAMRLALALGRRNLGRTWPNPSVGAVVVAEGRIVGQAVTAPGGRPHAEPLALA 69 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGAT YVTLEPCSHYGR+PPC + I GIRRVV ++DPD RV+GRG L Sbjct: 70 MAGEAARGATLYVTLEPCSHYGRTPPCTEATIASGIRRVVTAIEDPDPRVAGRGHAQLRA 129 Query: 122 KG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G + ++ E + +R R + LK+A ++D + + ITG I+ Sbjct: 130 AGLTVETGLLREEAARDHRGHFSRVTRGRPSLHLKLARTRDGFAAPSTGERLKITGPIAD 189 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VHL RA +DAI+VGIGT ADDP LT RL GL + SP+RI+LD +L+ S +++ A Sbjct: 190 GAVHLWRAHADAIMVGIGTARADDPSLTVRLPGLADRSPVRIVLDSTLRLNPASHLVRGA 249 Query: 241 LLAPVIIVTENDDPVLALAFRKK-NINIIYCDCR 273 P +++T P A + I + Sbjct: 250 RDLPTLVLTGRGAPAHARRMLASFGVEIAFVPTD 283 >gi|295692792|ref|YP_003601402.1| riboflavin biosynthesis protein ribd [Lactobacillus crispatus ST1] gi|295030898|emb|CBL50377.1| Riboflavin biosynthesis protein ribD [Lactobacillus crispatus ST1] Length = 352 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 170/347 (48%), Gaps = 8/347 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D +M+ AL ++ T NP V +IVK+G V+ G + G HAE A+ + Sbjct: 2 EKDTFYMNLALEEAKKGRYQTWKNPMVGAVIVKNGQVLATGYHHHYGQNHAERDAISKLT 61 Query: 65 -EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E+ +T YVTLEPC+HYG+ PPC+ II+ GI+RVVV DP V+G+G+ L + G Sbjct: 62 PEQLFNSTLYVTLEPCNHYGKQPPCSDLIIKSGIKRVVVGQIDPHKLVTGKGIAQLQKNG 121 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + ++ + Y IT+K A S DN + M PIT Q Sbjct: 122 IQVTTGVLADDASKLNKFYSYFYQYGFPWITVKEATSLDNKVAMR-GQRTPITNQAVYQQ 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA AI++G T + DDP L R N ++ P+RII+D +L ++ + Sbjct: 181 VHSERADYQAIMIGSSTAIIDDPIL--RTNVKSDYPPIRIIIDRRGRLLNHLRLRLLSDT 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 P I T+N + F I II+ ++++ L + + S+ VEGG + + Sbjct: 239 NPTWIFTQNKQ-MSKNNFTNSKIKIIHLATNKIQEVFDYLSTKEIQSVYVEGGPTLEKAI 297 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 +N V+ +I Y + I +G+ G+ + + V++ FG++ Sbjct: 298 MNEIFVNEVIKYTAPIFLGDEGVTGLVPNETVP--LTNVKKTAFGNN 342 >gi|282877095|ref|ZP_06285937.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC 35310] gi|281300777|gb|EFA93104.1| riboflavin biosynthesis protein RibD [Prevotella buccalis ATCC 35310] Length = 326 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 58/359 (16%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M L+ ++ L NP V +IV G ++G G G HAEV A Sbjct: 1 MNQEELDKMYMRRCLQLAKQGRALAKPNPMVGAVIVYQGRILGEGYHVRCGQAHAEVNAF 60 Query: 61 EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +T YV+LEPC H G++PPCA II ++RVV DP +V GRG+ Sbjct: 61 ASVRPADEPLLPQSTLYVSLEPCCHTGKTPPCADLIIRKHVKRVVCGCIDPFAQVHGRGV 120 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 Q L GI + +++ E + + + +R +I LK A + + + A + ++ Sbjct: 121 QKLRDAGIDVTVGVLDEECRALNRQFNVYNMLERPYILLKWAQTINGFLD-ADGEPLALS 179 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ VH LRAQ DAILVG T + P LT R P+R++L Sbjct: 180 TPFTQMLVHRLRAQYDAILVGRVTDEREHPRLTVR--EWSGPDPLRLVL----------- 226 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 D L +L+ L + V SL+VEGG Sbjct: 227 ----------------------------------RDGITLPQLMADLHQQHVQSLMVEGG 252 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A SFI++ L D I + S ++ GG +P+ L + ++R+ + +V + Sbjct: 253 AKTLQSFIDAGLWDEIRVETS-RLLVSGGTKAPV----LPAGLILLQREVYDGNVVDTF 306 >gi|259502164|ref|ZP_05745066.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041] gi|259169782|gb|EEW54277.1| ubiquinol-cytochrome c reductase [Lactobacillus antri DSM 16041] Length = 352 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 115/351 (32%), Positives = 170/351 (48%), Gaps = 14/351 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGE 65 D M A+ ++ T NP V ++VK+G V+ G T G HAE AL A Sbjct: 3 DETLMERAVAAAKQAGAATWRNPQVGAVVVKNGHVLATGHTQPYGGSHAERDALSRLAPG 62 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A GAT YVTLEPC+HYG+ PPC Q II GIRRVVV DP V+G+G+ L Q GI Sbjct: 63 QAAGATLYVTLEPCNHYGKQPPCTQLIINSGIRRVVVAQLDPHALVTGKGVANLRQHGIE 122 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V + + Y R +TLK A+S D + IT +VH Sbjct: 123 VVTGVGAQQAAQVNPHYDFFYRHHRPWVTLKQALSLDGRVSAGPGQRTAITNQAVYRRVH 182 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLS--LDSKIIKTAL 241 RA I++G T + DDP L L +Q H P+RI+LD +L+ D ++ Sbjct: 183 QERAGFQGIVIGSTTAIVDDPTL---LPSVQLAHLPIRIVLDRRGRLADYPDLRLFNDG- 238 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 LAP + TEN L ++ + ++ +L GV SL VEGG + ++ Sbjct: 239 LAPTWVFTENAALPDRL---GPWARVLVLPDCSVPAVVQVLAEEGVQSLYVEGGPTIQNA 295 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 F + LV+ ++ Y S +++G+ G+P + F + + G++V + Sbjct: 296 FARAGLVEEVLTYLSPVMLGQEGVPGFAPPETWK--FQDQQLELLGNNVRI 344 >gi|170741291|ref|YP_001769946.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46] gi|168195565|gb|ACA17512.1| riboflavin biosynthesis protein RibD [Methylobacterium sp. 4-46] Length = 398 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 136/364 (37%), Positives = 184/364 (50%), Gaps = 12/364 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD----GIVIGRGVTAYGGCPHAEVQ 58 +S D R+M AL R H+G T NPSV ++V ++ +GVT GG PHAE Sbjct: 19 QASLDRRYMRLALALGRRHLGRTWPNPSVGAVLVAGPPGAERILAQGVTQPGGRPHAERV 78 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AL EAGE ARGAT YVTLEPCSH+GR+ PCA ++ G+ RVV ++DPD RV+GRG Sbjct: 79 ALAEAGEAARGATLYVTLEPCSHHGRTSPCADAVLAAGVARVVSAMNDPDPRVAGRGHGR 138 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L G+ V +E HA +V + G G + ITG + Sbjct: 139 LRAGGVAVTVGPCAEEAARDHAGHVMRVTTGRPALCLKLARTADGFAAGGAGRLLITGAL 198 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 + +VH LRA SDAILVGIGT LADDP LT RL GL + SP+ ++LDP +L +++++ Sbjct: 199 ANAEVHRLRAHSDAILVGIGTALADDPALTVRLPGLGDRSPLPVVLDPQLQLPPGARLLR 258 Query: 239 TALLAPVIIVTENDDPVLA-LAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292 A +I+ P A A R+ ++ DL L L RG+T + Sbjct: 259 PGGRAQTLILAGAAAPPAAERALREAGAEVLRLPAGPDGRPDLAASLRALGARGITRVFC 318 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS--PLEEGYLEKNFMCVRRDYFGSDV 350 EGG +A + + LVDS +L +G+ G P+ P L V G D Sbjct: 319 EGGPTLADALAAADLVDSCLLLTGAAPLGQPGKPAIGPALAARLAGGLRRVAERPLGPDR 378 Query: 351 CLEY 354 Y Sbjct: 379 LTTY 382 >gi|282880496|ref|ZP_06289203.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS 5C-B1] gi|281305599|gb|EFA97652.1| riboflavin biosynthesis protein RibD [Prevotella timonensis CRIS 5C-B1] Length = 314 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 150/351 (42%), Gaps = 54/351 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + + D +M L+ ++ L NP V ++V +IG G G HAEV A Sbjct: 3 INQDAIDKMYMRRCLQLAKQGRALAKPNPMVGAVLVCGDRIIGEGYHIKYGEAHAEVNAF 62 Query: 61 EEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 ++ +T YV+LEPCSHYG++PPCA I+E ++RVV D +V GRG+ Sbjct: 63 AAVRQQDEHLLPESTLYVSLEPCSHYGKTPPCADLIVEKRVKRVVCGCIDVFAKVQGRGI 122 Query: 117 QWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L + GI + ++E E K+ + R +I LK A + + I ++ ++ Sbjct: 123 DKLRKAGIEVTVGVLEEECKLLNRQFNVFNTLHRPYILLKWAQTANGFIDD-NGRAIALS 181 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 +K VH LR++ DAILVG T + P+L R SP+R++L Sbjct: 182 SPFTKMLVHKLRSEYDAILVGRVTDEREHPQLNVR--EWSGPSPLRLVL----------- 228 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 L +LL L R + SLLVEGG Sbjct: 229 ----------------------------------HHGISLPELLDDLYQRNLQSLLVEGG 254 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 A SFIN+ L D I + + + + G P+P +E + R Y Sbjct: 255 ATTLQSFINANLWDEIRIETAPVTV-TNGTPAPRVPQGVELIAHEIHRKYI 304 >gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis C6786] Length = 246 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 136/244 (55%), Gaps = 5/244 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IV++ +VIG G T G HAEVQAL++ Sbjct: 2 FSESDFTHMQRALALAARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + R AT YVTLEPCSH+GR+PPCA +I+ + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGGDLRDATVYVTLEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A S D +A S ITG Sbjct: 122 RDAGIDVRCGLLTHEAHEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +++ H RA++ AIL GIGTV DDP+L R P R+++D + L +++++ Sbjct: 182 ARDDGHKWRARACAILTGIGTVREDDPQLNVR-GVDTPRQPRRVLIDSRLDIPLSARLLE 240 Query: 239 TALL 242 L Sbjct: 241 GGSL 244 >gi|332670474|ref|YP_004453482.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484] gi|332339512|gb|AEE46095.1| riboflavin biosynthesis protein RibD [Cellulomonas fimi ATCC 484] Length = 395 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 177/362 (48%), Gaps = 41/362 (11%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 V+ + M A+ +R NP V C+++ DG V+G G A G PHAEV AL Sbjct: 19 VTPLEVAAMRQAMLLARRG-PRHGANPRVGCVLLTPDGSVVGEGWHAGAGTPHAEVAALR 77 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +A G GATA VTLEPC H GR+ PC Q ++ G+RRVVV V DP+ V+ G + Sbjct: 78 DAASRGLPTDGATAVVTLEPCDHTGRTGPCTQALLAAGVRRVVVSVPDPNP-VAAGGAER 136 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L G+ +V ++ +G+ L +L R +TLK+A S D + A S IT Sbjct: 137 LRAAGVDVVTDVLAPDGRTLLGTWLASVERGRPFVTLKLATSLDGRVAAADGSSRWITSD 196 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSK 235 +S++ H LRA+ DAI VG GTVLADDP LT R + H P+R+++ H + ++ Sbjct: 197 VSRHHAHDLRAEVDAIAVGTGTVLADDPSLTARNAAGELHRDQPLRVVV-GHRDVPAGAR 255 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + +++ D +L +L R V LLVEGG Sbjct: 256 L------------------------HGPGGEVVHVRSHDPADVLRVLAEREVRHLLVEGG 291 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDV 350 +A +F+ +RLVD + Y + +++G G PS + + + +R G DV Sbjct: 292 PTLAAAFLRARLVDEVHAYVAPVLLGAG--PSAVADLGVTGIDGALRLTMRSVLPLGPDV 349 Query: 351 CL 352 + Sbjct: 350 LV 351 >gi|307564973|ref|ZP_07627490.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A] gi|307346286|gb|EFN91606.1| riboflavin biosynthesis protein RibD [Prevotella amnii CRIS 21A-A] Length = 313 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 55/360 (15%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA 59 M + D +M L+ ++ + L NP V +IV D G +IG G G HAEV A Sbjct: 1 MELKEIDEMYMRRCLQLAKNGMLLAKPNPMVGAVIVSDNGRIIGEGYHICYGKEHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++ +T YV LEPCSH+G++PPCA II+ G+ RVV DP VSGRG Sbjct: 61 FASVRKKDEHLLSKSTIYVNLEPCSHFGKTPPCADLIIKKGVGRVVCGCIDPFSVVSGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 +Q + + GI + ++E E ++T +KR +I LK A + + IG+ + I Sbjct: 121 VQRIREAGIPVSVGVLERECLALNKRFITFNTKKRPYIILKWAQTANGFIGIK-GDVLKI 179 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +K VH LRA++DAI+VG T + + P+L R SP++++L ++ Sbjct: 180 STSFTKMLVHKLRAENDAIIVGRNTEMLEHPQLNVR--KWWGKSPLKVVLSSTL---PEA 234 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 D+ LL L R S+++EG Sbjct: 235 -------------------------------------IHDIPTLLNELHRRMCQSVIIEG 257 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 GA +FI + L D I + S + I + GI +P L + V+++YF +V Y Sbjct: 258 GAMTLENFIKNDLYDEIRVEESSLTI-KEGIKAP----QLPTDIRVVKKEYF-DNVITTY 311 >gi|226306507|ref|YP_002766467.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus erythropolis PR4] gi|226185624|dbj|BAH33728.1| riboflavin biosynthesis bifunctional protein RibG [Rhodococcus erythropolis PR4] Length = 350 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 167/346 (48%), Gaps = 34/346 (9%) Query: 20 WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78 G TS NP V +I+ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEP Sbjct: 25 SARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEP 84 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-F 137 C+H GR+ PC+Q +I+ G+ VV V DP+ SG + + + E + Sbjct: 85 CNHQGRTGPCSQALIDAGVSAVVYAVGDPNPEASGGAATLMRAGISVTAGLRAPEVEAGP 144 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204 Query: 198 GTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GTV ADDP LT R L H P+R+++ ++ + ++ AP ++ Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKR-EIPSTASVLDD--TAPTLV-------- 253 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + ++ +++ L T +L+EGG +A +F+ + VD I Y Sbjct: 254 --------------LNTDNIDEVVEALGEY--TDVLLEGGPRLAGAFLAAGYVDVIEAYI 297 Query: 316 SQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + I++G G + + + F G D+ L + ++ Sbjct: 298 APILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343 >gi|330718204|ref|ZP_08312804.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc fallax KCTC 3537] Length = 346 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 103/351 (29%), Positives = 164/351 (46%), Gaps = 19/351 (5%) Query: 7 DARFMSAALRFSRWH-VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M+ A + + LT NP V +IVKD +V+ G G HAE+ + + Sbjct: 3 DLTLMALAGKTAAQANKDLTFENPRVGAVIVKDNVVLATGYHHQFGQEHAEMNTFHQLKD 62 Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 A+ AT YVTLEPCS +G+ CAQ + + G+RRVV+ DP+ +G G+ L Q G Sbjct: 63 PAQVIDATMYVTLEPCSTHGKVGSCAQSMAKWGLRRVVIGSIDPNPSTNGHGVAILKQAG 122 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I VD + + + + ++ LK+A S++ ++ + +T + V Sbjct: 123 IQVDVLNTEHSRRLNPEFHYYFEHRLPYVQLKLATSKNGIVSDNAKTRIKLTNHKADIDV 182 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA AIL+G T L D P LT R L P+RI+LD +L IK Sbjct: 183 HQERASKSAILIGSQTFLTDWPSLTVRYLALHHPQPLRIVLDRRGRLQN----IKFDFSN 238 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 +I TEN A+ K++ N + DL + + + S++VEGG ++ SFI Sbjct: 239 RWLIYTENHAFAEKHAYVKESHNGLIGVLNDLAQ------QQQIQSIMVEGGPSLIQSFI 292 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L + ++YR+ ++ + G+ S + ++ G+ V L Y Sbjct: 293 AQDLWNEYLIYRTDKLLLDSGLASVTLQQNPDEMLT------IGNAVKLRY 337 >gi|15827206|ref|NP_301469.1| bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae TN] gi|221229684|ref|YP_002503100.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae Br4923] gi|13092754|emb|CAC30063.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae] gi|219932791|emb|CAR70648.1| putative bifunctional riboflavin-specific deaminase/reductase [Mycobacterium leprae Br4923] Length = 339 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 175/367 (47%), Gaps = 42/367 (11%) Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEV 57 M V + D+ M A+ S G T NP V +IV DG V+G G T G HAEV Sbjct: 1 MNVQTVDSLDAAMRLAVEQSYLVKGATYPNPPVGAVIVDPDGRVVGVGATEPAGGDHAEV 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AG A GA A VTLEPC+HYG++PPC ++E + +V + DP+ +G G Sbjct: 61 VALRSAGVTAAGAIAVVTLEPCNHYGKTPPCVNALLEAKVDKVAYAIADPNA-SAGGGAA 119 Query: 118 WLSQKGIIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 L+ G+ V + ++ L +L +Q H+T K A S D A S ++ Sbjct: 120 RLTAAGVHVQSGVLADLVTAGPLREWLHKQRTGLPHVTWKYASSIDGRSAAADGSSRWLS 179 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLD 233 S+ +H RA +DAI+VG GTVLAD+P LT RL L + P+R+++ ++ L+ Sbjct: 180 SEASRADLHRRRATADAIVVGTGTVLADNPTLTARLANGALADRQPLRVVVGMR-EIPLE 238 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 + ++ VI D ++L L R T +L+E Sbjct: 239 ANVLNDDSPTMVI------------------------RTHDPMEVLKALADR--TDVLLE 272 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGS 348 GG +A +F+ + ++ I+ Y + I++G G + +++ + +R D GS Sbjct: 273 GGPTLAGAFLRAGTINRILAYVAPILLG--GPVTAVDDVGVPNIARALRWQFDGIDRAGS 330 Query: 349 DVCLEYI 355 D+ + + Sbjct: 331 DLVISLV 337 >gi|311739500|ref|ZP_07713335.1| riboflavin biosynthesis protein RibD [Corynebacterium pseudogenitalium ATCC 33035] gi|311305316|gb|EFQ81384.1| riboflavin biosynthesis protein RibD [Corynebacterium pseudogenitalium ATCC 33035] Length = 340 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 123/351 (35%), Positives = 179/351 (50%), Gaps = 33/351 (9%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A+ G TS NP V +IV G ++G G T G HAEV AL EAG++ARGAT Sbjct: 16 RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 A VTLEPC+H GR+ PCAQ +I+ G+ RV DP + +G G + L++ G+ V ++ + Sbjct: 76 AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLARAGVDVAKLEK 134 Query: 132 SEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 L +L +R H+TLK A + D A S ITG +++ VH RA Sbjct: 135 PPHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHR 194 Query: 191 DAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAI+VG GT LAD+P LT RL L+ H P R+++ K L+S Sbjct: 195 DAIVVGTGTALADNPSLTARLSDGSLRAHQPRRVVI---GKRDLES-------------A 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + + L + + + +++ L L G +LVEGGA +A SF+ + LV Sbjct: 239 GDAASHLRELGYEQYD---------SIEEALYELYATGARDVLVEGGAGLASSFLKADLV 289 Query: 309 DSIILYRSQIVIGEGG--IPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356 D+I Y + +++GEG + P+ + E F V G DV +EY+ Sbjct: 290 DAISAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340 >gi|317504450|ref|ZP_07962429.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606] gi|315664438|gb|EFV04126.1| riboflavin biosynthesis protein RibD [Prevotella salivae DSM 15606] Length = 318 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 102/326 (31%), Positives = 146/326 (44%), Gaps = 40/326 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE- 66 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 4 EYYMKRCLQLAENGRQNAKPNPMVGAVIVARNRIIGEGYHVRFGEEHAEVNAFASVKPED 63 Query: 67 ---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q + G Sbjct: 64 EMLLNEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I ++ +ME E H ++T + R +I LK A + + I G + ++ ++ Sbjct: 124 IEVIVGVMEKECLALNHRFITFNAKHRPYILLKWAQTLNGFISRK-GGPLQLSTPKTQML 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA++DAILVG T L+D P L R +P RI+L P Sbjct: 183 VHQLRAENDAILVGHTTFLSDHPRLDVR--QWSGQNPERIVLSPTMS------------- 227 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A R N + + K++ L SL+VEGG +F Sbjct: 228 --------------AQNARPSNWTVAAT----IDKVIAHLYATKKQSLVVEGGRMTLQAF 269 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSP 328 I+ L D I + + ++I G+P+P Sbjct: 270 IDRGLWDEIRIETAPVLI-TDGVPAP 294 >gi|229493689|ref|ZP_04387474.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis SK121] gi|229319650|gb|EEN85486.1| riboflavin biosynthesis protein RibD [Rhodococcus erythropolis SK121] Length = 350 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 167/346 (48%), Gaps = 34/346 (9%) Query: 20 WHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEP 78 G TS NP V +I+ DG + G G+T G PHAEV AL+EAG+ ARG TA VTLEP Sbjct: 25 SARGFTSPNPPVGAVILAADGTIAGVGMTQPPGGPHAEVVALDEAGDAARGGTAVVTLEP 84 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-F 137 C+H GR+ PC+Q +I+ G+ VV V DP+ SG + + + E + Sbjct: 85 CNHQGRTGPCSQALIDAGVSAVVYAVGDPNPEASGGAATLMRAGISVTAGLRAPEVEAGP 144 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L A+L +Q R HIT K A S D S ITG ++ +VH RAQ DAI+VG Sbjct: 145 LRAWLHKQRTGRPHITWKYAASLDGRSAAEDGTSQWITGPQARARVHAQRAQIDAIVVGT 204 Query: 198 GTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GTV ADDP LT R L H P+R+++ ++ + I+ AP ++ Sbjct: 205 GTVFADDPWLTARQPTGELAAHQPVRVVVGKR-EIPSTASILDD--TAPTLV-------- 253 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + ++ +++ L T +L+EGG +A +F+ + VD I Y Sbjct: 254 --------------LNTDNVDEVVEALGEY--TDVLLEGGPRLAGAFLAAGYVDVIEAYI 297 Query: 316 SQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 + I++G G + + + F G D+ L + ++ Sbjct: 298 APILLGAGASALVDAGVHTITDAHRFRLESAVTIGPDILLSLVPES 343 >gi|326773583|ref|ZP_08232866.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505] gi|326636813|gb|EGE37716.1| riboflavin biosynthesis protein RibD [Actinomyces viscosus C505] Length = 362 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 98/333 (29%), Positives = 147/333 (44%), Gaps = 36/333 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 ++ M ALR + NP V C+I+ DG V+ G G HAEV AL Sbjct: 3 SFTTVQTAAMQRALRAAASPDTPPGPNPRVGCVILSSDGDVLAEGHHRGAGSAHAEVDAL 62 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G ARGAT VTLEPC+H GR+ PC Q +++ G+ V+ DDP +G G Sbjct: 63 ANLAATGASARGATVLVTLEPCNHQGRTGPCVQALLDAGVAEVIYAQDDP-TEQAGGGAA 121 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L G+ + + E +L R +T K+A + D I A S IT Sbjct: 122 TLEAGGVRVRRGLCAQEAARLNRPWLLAVTRGRPMVTWKLAATLDGRIAAADGTSQWITP 181 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSL 232 +++ H LR Q DAI+VG GT LADDP LT R Q P+R+++ L Sbjct: 182 VAARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRVVVGSR-SLPP 240 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 ++++ + + D + +L L R + +L+ Sbjct: 241 TARVLADD-------------------------HYLLLPDHDPRAVLAALAEREIRHVLL 275 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 EGG +A +F+ + LVD ++ Y + ++G G Sbjct: 276 EGGPTLATAFLRAGLVDRVVAYTAPALLGAGSA 308 >gi|302517924|ref|ZP_07270266.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78] gi|302426819|gb|EFK98634.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB78] Length = 364 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 116/352 (32%), Positives = 169/352 (48%), Gaps = 12/352 (3%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + +G + I ++ Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADPTDQATGGADTQRAAGVDIEHGLL 130 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 E E A+LT R H+T K A S D A S IT ++ VH LRA Sbjct: 131 EREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRATC 190 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIVT 249 DA+LVG GT DDP L R P+R++LD + ++++ A AP ++ Sbjct: 191 DAVLVGSGTARTDDPHLAVR-GIPGAPQPLRVVLDTEGTAVRGGARVLDDA--APTLVAL 247 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 +D P A + DL LL L R V +L+EGGA +A +F+ + D Sbjct: 248 ADDAPAPAHGAELLRLPRAARGGLDLTALLAALYARDVRGILLEGGARLAGAFVAAGYTD 307 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 ++ Y + +++G G P+ L + + +R D G D+ + + Sbjct: 308 RVVGYLAPVLLGAG--PAALTDAGIPTLTAALRLDVRDSTRLGPDLRITAVP 357 >gi|228469568|ref|ZP_04054561.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3] gi|228308918|gb|EEK17593.1| riboflavin biosynthesis protein RibD [Porphyromonas uenonis 60-3] Length = 338 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 111/335 (33%), Positives = 167/335 (49%), Gaps = 15/335 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D +M L+ + G TS NP V +IV +IG G Y G PHAEV A Sbjct: 7 TTPDEIYMQRCLQLAALAQGRTSPNPMVGSVIVYKDKIIGEGYHHYAGAPHAEVMAWRSV 66 Query: 64 GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 EE RG AT YV+LEPC+HYG++PPCA+ I RVVV + DP +V GRG+ L Sbjct: 67 PEELRGLVGEATWYVSLEPCAHYGKTPPCAELIAGLRPARVVVAMLDPFAKVDGRGVARL 126 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP----I 174 + GI + +E +L Q R ++TLK A S D+ I + Sbjct: 127 REAGIEVSIGCLEQAAIALNRHFLVAQTLGRPYVTLKWAESADHYIDRLRHDASEAPYIF 186 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS-LD 233 + + + VH LR DAILVG T DDP LT R P+R +L H +L + Sbjct: 187 SSPLRQRSVHRLRGLHDAILVGHHTAELDDPLLTNRSG--CGGQPIR-LLWCHSRLPRPE 243 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 ++++ A +I++ + +++ + ++ LLT+L +G+ SLLVE Sbjct: 244 LRMLQDATARTIILLPPTLMAQVPDGQYPPHVSCLATTGE-VRDLLTLLRSQGIESLLVE 302 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 GGA V F++S L D + + + + + G+P+P Sbjct: 303 GGAQVLQRFLDSGLYDELNVEHAPVEL-HDGVPAP 336 >gi|294010277|ref|YP_003543737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium japonicum UT26S] gi|292673607|dbj|BAI95125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingobium japonicum UT26S] Length = 317 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 135/352 (38%), Positives = 181/352 (51%), Gaps = 45/352 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ S+ GL++ NP+V CLIVKDG V+GRG T GG PHAE QAL+EA + ARGA Sbjct: 1 MAAAIALSQRGRGLSTPNPNVGCLIVKDGHVVGRGWTQRGGRPHAEAQALDEALDRARGA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-R 128 TAYVTLEPC H R P CA + G+RRVV+ + DPD R G+G WL Q G+ VD Sbjct: 61 TAYVTLEPCFHLSPRGPRCADRMARAGVRRVVIALRDPDPRTDGQGAAWLRQHGVAVDMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 +M E + ++ RQ R +TLK+ +S D I +A S ITG ++ H+ RA Sbjct: 121 LMAGEAAAAMRGFVLRQTLGRPAVTLKLGLSLDGRIALADGSSRWITGPEARAHAHMERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ SP R++L D+ + AP Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLLGLEDRSPRRVLLSHG-----DAPGGWETIAAP---- 231 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 D+ L V LLVEGGA A +F+ + LV Sbjct: 232 ------------------------EDIAALP------QVDHLLVEGGAQAAAAFLRADLV 261 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 D ++LYR+ I+IG G G + + G+D Y+ Sbjct: 262 DRLLLYRAPILIGAGLAGVGDIGLTDLAGAHGRWRLDDERRLGNDRLEVYLR 313 >gi|255325040|ref|ZP_05366146.1| riboflavin biosynthesis protein RibD [Corynebacterium tuberculostearicum SK141] gi|255297605|gb|EET76916.1| riboflavin biosynthesis protein RibD [Corynebacterium tuberculostearicum SK141] Length = 340 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 123/351 (35%), Positives = 178/351 (50%), Gaps = 33/351 (9%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A+ G TS NP V +IV G ++G G T G HAEV AL EAG++ARGAT Sbjct: 16 RAMAAGAEVRGTTSPNPPVGAVIVSPAGEIVGVGATQPVGGAHAEVMALREAGDKARGAT 75 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 A VTLEPC+H GR+ PCAQ +I+ G+ RV DP + +G G + L+ G+ V ++ + Sbjct: 76 AVVTLEPCAHTGRTGPCAQALIDAGVARVYYLHADPTPQAAG-GAEVLAGAGVDVAKLEK 134 Query: 132 SEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 L +L +R H+TLK A + D A S ITG +++ VH RA Sbjct: 135 PPHAEDALVPWLFAVRTQRPHVTLKFAQTLDGFTAAADGTSQWITGEAARDWVHADRAHR 194 Query: 191 DAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAI+VG GT LAD+P LT RL L+ H P R+++ K L+S Sbjct: 195 DAIVVGTGTALADNPSLTARLSDGSLRAHQPRRVVI---GKRDLES-------------A 238 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 + + L + + + +++ L L G +LVEGGA +A SF+ + LV Sbjct: 239 GDAASHLRELGYEQYD---------SIEEALYELYATGARDVLVEGGAGLASSFLKADLV 289 Query: 309 DSIILYRSQIVIGEGG--IPSPLEEGYLEK-NFMCVRRDYFGSDVCLEYIG 356 D+I Y + +++GEG + P+ + E F V G DV +EY+ Sbjct: 290 DAISAYIAPLLLGEGRGVLAHPVTQTLAEATRFRRVGMKALGDDVLIEYVR 340 >gi|119716673|ref|YP_923638.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nocardioides sp. JS614] gi|119537334|gb|ABL81951.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nocardioides sp. JS614] Length = 345 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 93/319 (29%), Positives = 139/319 (43%), Gaps = 26/319 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + NP V C+++ DG + G G HAE AL AG ARG Sbjct: 1 MRRALELAAAPGVPLGPNPRVGCVLLDEDGRTVAEGHHRGAGTAHAEADALARAGVRARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 ATA VTLEPC+H GR+ PCAQ +I G+RRVV DP+ + G L G+ + Sbjct: 61 ATAVVTLEPCNHTGRTGPCAQALIGAGVRRVVFAQPDPNP-AAAGGADTLRAAGVDVESG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + + R +T K A + D A S ++ ++ H LRA Sbjct: 120 LLHVESGLLNRFWAFGLAHGRPFVTWKFATTLDGRSAAADGTSRWVSSRAARLDTHRLRA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + D +LVG T+ DDP LT R + EH P+R ++ L ++ Sbjct: 180 RCDVMLVGTNTIEVDDPLLTVRDEHDRPLEHQPLRAVMGER-DLDPGRRVFDQRPA---- 234 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 ++ RD +K L L + +EGG +A +F+ + Sbjct: 235 ----------------NGAESVHLRTRDPEKALAELAALDRQHVFLEGGPTLAAAFLKAG 278 Query: 307 LVDSIILYRSQIVIGEGGI 325 LVD I+ Y + +++G G Sbjct: 279 LVDEIVAYVAPMLLGSGRA 297 >gi|25028272|ref|NP_738326.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium efficiens YS-314] gi|23493556|dbj|BAC18526.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium efficiens YS-314] Length = 328 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 154/356 (43%), Gaps = 37/356 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + A+ S VG TS NP V +I+ DG + G G T G HAEV AL AG Sbjct: 4 EEALQLAIEASEEVVGTTSPNPPVGAVILDADGELAGIGATQPPGGAHAEVMALAAAGPR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARG TA VTLEPC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G+ Sbjct: 64 ARGGTAVVTLEPCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAGVDT 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + L +L R HITLK A + D S ITG ++ VH Sbjct: 123 HLLGLP--VPTLSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHAD 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R + DAI+VG GT L D+P LT R GL +H P R+++ + S + + Sbjct: 181 RTRRDAIIVGTGTALTDNPSLTARGPAGLYDHQPRRVVIGRRP-VPAGSNLDRLGFE--- 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + L L G +L+EGG +A + + + Sbjct: 237 -------------------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRA 271 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYIGKN 358 L+D+I Y + ++G G + G F G DV ++ K+ Sbjct: 272 GLIDAIRAYVAPAILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 327 >gi|297745271|emb|CBI40351.3| unnamed protein product [Vitis vinifera] Length = 348 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 98/359 (27%), Positives = 159/359 (44%), Gaps = 24/359 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M + +R +G TS NP V C+IVKDG V+G G G PH EV AL +AG+ A A Sbjct: 1 MRRCVELARKAIGCTSPNPMVGCVIVKDGKVVGEGFHPKAGQPHGEVFALRDAGDLAENA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYV+LEPC+HYGR+PPC + +I+ +++VV+ + DP+ V+ +G+ L GI V + Sbjct: 61 TAYVSLEPCNHYGRTPPCTEALIKAKVKKVVIGMVDPNPIVASKGVDRLRDAGIEVTVAV 120 Query: 131 ESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E E K AY+ + + + +TL+ ++S + I V G V + Sbjct: 121 EEELCKKLNEAYIHQMLTGKPFVTLRYSLSINGHILDQLGEGVEEAGGYYSQLVQ----E 176 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 DAI++ TV + G P+ I++ I T + VII Sbjct: 177 YDAIILSPTTVTEKFSFPASQEPGAN--QPLHILIAKSPISPNQIPIPHTEATSKVIIFA 234 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF------- 302 +N+ V +K I + D +L +L +G+ S+L++ + +F Sbjct: 235 DNETAVEPEMV-QKGIETVVLDQINLNAVLEYCKRQGLCSILLD----LRGNFGYFEDLL 289 Query: 303 ---INSRLVDSIILYRSQIV--IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + L+ +++ E G+P L+ + V LE Sbjct: 290 KQSLEENLLQKVVVEVLPFWSTNEEEGLPLALKNLRKGIRLKNITSRNSNDSVVLEGYP 348 >gi|242347654|gb|ACS92631.1| conserved hypothetical protein [Triticum aestivum] Length = 396 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 165/357 (46%), Gaps = 21/357 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA +M + +R G TS NP V C+IV++G V+G G G PHAEV AL +AG Sbjct: 50 DMDAHYMRRCVDLARTAAGHTSPNPMVGCVIVREGEVVGEGFHPKAGQPHAEVFALRDAG 109 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A ATAYV+LEPC+HYGR+PPC + +I+ I+ VVV + DP+ V+ +G++ L GI Sbjct: 110 DLAENATAYVSLEPCNHYGRTPPCTEALIKAKIKEVVVGMTDPNPIVASKGIEKLRNAGI 169 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQ 182 + + E+ AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 170 DVRVGVEEALCLRLNEAYIHRMLTGKAFATLRTTLSMNGIVINQIGSGADQPGGYYS--- 226 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 L + D +++ A ++ P+ II+ L + Sbjct: 227 --QLAKEYDGVVISSDMAKATTLPIS---QEAGAKQPLYIIIAQGEGSKLHIPFLDEESA 281 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGGAAVA 299 + I++ D PV A +++ D +L +L IL RG+ S+LV + G A+A Sbjct: 282 SNAIVLA--DSPV---AVEPSGVSVSVLDEMNLDSILRILADRGLCSVLVDFRDAGGALA 336 Query: 300 H---SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 F +LV +++ S + + G G V + LE Sbjct: 337 SLLKDFQEDKLVQKVLVELSPVWMVSPGPSDLAFGGSQSFALKNVEHKEVNGTLLLE 393 >gi|260204674|ref|ZP_05772165.1| putative riboflavin biosynthesis protein [Mycobacterium tuberculosis K85] gi|289574078|ref|ZP_06454305.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis K85] gi|289538509|gb|EFD43087.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis K85] Length = 339 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 113/364 (31%), Positives = 168/364 (46%), Gaps = 40/364 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DILPEARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + + ++L L R T +L+EGG Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A +F+ + ++ I+ Y + I++G P + N R F S +E +G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330 Query: 358 NLCL 361 +L L Sbjct: 331 DLLL 334 >gi|34764917|ref|ZP_00145265.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE; 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27885744|gb|EAA23138.1| DIAMINOHYDROXYPHOSPHORIBOSYLAMINOPYRIMIDINE DEAMINASE; 5-AMINO-6-(5-PHOSPHORIBOSYLAMINO)URACIL REDUCTASE [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 223 Score = 259 bits (662), Expect = 5e-67, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 122/205 (59%), Gaps = 1/205 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++M+ A+ ++ +G + NP V +IVKDG +IG G G PHAEV AL EAGE Sbjct: 5 LDEKYMARAIELAKRGIGGVNPNPLVGAVIVKDGKIIGEGWHKKFGGPHAEVWALNEAGE 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A GAT YVTLEPCSH G++PPCA+ I+E GI+R VV DP+ V+G+G++ + GI Sbjct: 65 NAEGATIYVTLEPCSHQGKTPPCAKRIVEAGIKRCVVACIDPNPLVAGKGIKIMEDAGIE 124 Query: 126 VD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 V+ ++E E K +L K ++ LK ++ D I S IT I++ +V Sbjct: 125 VELGVLEKEAKDVNKIFLKYIENKIPYLFLKCGITLDGKIATRSGKSKWITNEIAREKVQ 184 Query: 185 LLRAQSDAILVGIGTVLADDPELTC 209 LR + AI+VGI TVL D+P L Sbjct: 185 FLRTKFMAIMVGINTVLKDNPSLDS 209 >gi|170783175|ref|YP_001711509.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis subsp. sepedonicus] gi|169157745|emb|CAQ02947.1| riboflavin biosynthesis protein RibD [Clavibacter michiganensis subsp. sepedonicus] Length = 355 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 151/353 (42%), Gaps = 35/353 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--AG 64 R M L + NP V C+I+ G VI G G HAEV AL + AG Sbjct: 21 ERAMRRGLELAAEGPAW-GPNPRVGCVILDASGRVIAEGRHRGAGSAHAEVDALRQLPAG 79 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARGATA VTLEPC+H GR+ PCA ++E G+ RV V DP SG + + Sbjct: 80 -GARGATAVVTLEPCNHTGRTGPCAAALVEAGVARVAYAVADPGAESSGGAARLRAAGVE 138 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V ++ E FL +L R +T K A S D I A S ITG ++ VH Sbjct: 139 VVPGVLADEAAAFLQVWLGSASLGRPFVTAKWASSLDGRIAAADGSSRWITGTAAREDVH 198 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA++DAILVG GTVLADDP LT R H P ++L + D+ + Sbjct: 199 RRRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRA-IPDDAAV------ 251 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + +I D L L RG+ + VEGG + + Sbjct: 252 ------------------HRHPRRLIRLPGHDPAAALDELGNRGIRHVFVEGGPTIVSAL 293 Query: 303 INSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 + + LVD ++ Y + +++G + + + G D+ + Sbjct: 294 LAAGLVDEVVAYLAPVLLGGPRTATGDLGVPSMPDAHRLTLISTTRLGDDLLV 346 >gi|118473539|ref|YP_887383.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str. MC2 155] gi|118174826|gb|ABK75722.1| riboflavin biosynthesis protein RibD [Mycobacterium smegmatis str. MC2 155] Length = 335 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 112/359 (31%), Positives = 164/359 (45%), Gaps = 38/359 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M A+ + G T NP V +I+ +DG V G G T G PHAEV AL A E Sbjct: 6 EAAMRLAIDQAEQVKGATYPNPPVGAVILDRDGQVAGVGGTQPTGGPHAEVMALRAAAER 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G TA VTLEPC+H+GR+PPC ++ GI RVV V DP+ +G + S + Sbjct: 66 AEGGTAVVTLEPCNHHGRTPPCVDGLVAAGISRVVYAVADPNPVAAGGSARMASSGIEVT 125 Query: 127 DRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E L +L +Q H+T K A S D A S IT ++ VH Sbjct: 126 SGVLSDEVAGGPLREWLHKQRTGLPHVTWKFATSVDGRSAAADGSSQWITSAAARADVHR 185 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 RA +DAI+VG GTV DDP LT RL L + P+R+++ ++S D+ ++ Sbjct: 186 RRAAADAIVVGTGTVFVDDPSLTARLPDGTLADRQPLRVVVGRR-EVSSDANVLNDDSRT 244 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 VI D ++L L R T +++EGG +A +F+ Sbjct: 245 MVI------------------------RTHDPHEVLRALSDR--TDIMLEGGPTLAGAFL 278 Query: 304 NSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + +V+ I+ Y + I++G + P F CV+ G DV + + Sbjct: 279 RAGVVNRILAYVAPILLGGPITAVDDVGVPSIAHAQRWRFDCVQT--IGPDVLMSLVPN 335 >gi|227504400|ref|ZP_03934449.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium striatum ATCC 6940] gi|227199048|gb|EEI79096.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium striatum ATCC 6940] Length = 344 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 170/354 (48%), Gaps = 35/354 (9%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A+ + G TS NP V +I+ +G ++G G T G PHAEV AL+EAG ARG Sbjct: 11 RAMEAGQSVRGTTSPNPPVGAVILDAEGNLVGTGATQPVGGPHAEVMALQEAGSSARGGI 70 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 A VTLEPC+H GR+ PCA+ +I I +V DP+ V+ G Q L GI V ++ Sbjct: 71 AVVTLEPCNHTGRTGPCAEALIAADISQVYFLHPDPN-GVAAGGAQTLRAAGIEVAQIEA 129 Query: 132 SEG---KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 L +LT R H+TLK A + D + S ITG ++ VH+ RA Sbjct: 130 PAELPVSDALIPWLTSLRLGRPHVTLKFAQTLDGFTAASDGTSQWITGEHAREWVHVDRA 189 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + DAI++G GT LAD+P LT R L+E P R+++ Sbjct: 190 RRDAIIIGTGTALADNPSLTARFPDGTLREQQPRRVVIGQRN------------------ 231 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 D + R+ Y ++ L L G +LVEGGA +A +F+N+ Sbjct: 232 ---LEDAGAASSHLRELG----YDQFANIDDALISLYEAGARDVLVEGGAGLASAFLNAG 284 Query: 307 LVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGK 357 VD++ Y + +++GEG + P+ + + + F V G DV +EY+ + Sbjct: 285 YVDAVQAYIAPLLLGEGRGVLAHPVAQTLQDARRFQRVGTTVLGDDVLIEYVRR 338 >gi|15608547|ref|NP_215925.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis H37Rv] gi|15840867|ref|NP_335904.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551] gi|148661200|ref|YP_001282723.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra] gi|148822629|ref|YP_001287383.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis F11] gi|167968448|ref|ZP_02550725.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis H37Ra] gi|215403256|ref|ZP_03415437.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis 02_1987] gi|215411054|ref|ZP_03419862.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis 94_M4241A] gi|215445596|ref|ZP_03432348.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T85] gi|218753118|ref|ZP_03531914.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis GM 1503] gi|253799541|ref|YP_003032542.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 1435] gi|254231651|ref|ZP_04924978.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis C] gi|254364292|ref|ZP_04980338.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|254550423|ref|ZP_05140870.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289554800|ref|ZP_06444010.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 605] gi|289745160|ref|ZP_06504538.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987] gi|289757515|ref|ZP_06516893.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85] gi|289761568|ref|ZP_06520946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis GM 1503] gi|294994971|ref|ZP_06800662.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis 210] gi|297633965|ref|ZP_06951745.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 4207] gi|297730954|ref|ZP_06960072.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN R506] gi|298524915|ref|ZP_07012324.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis 94_M4241A] gi|313658287|ref|ZP_07815167.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN V2475] gi|2829534|sp|P71677|RIBD_MYCTU RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1542917|emb|CAB02188.1| PROBABLE BIFUNCTIONAL riboflavin biosynthesis protein RIBG : Diaminohydroxyphosphoribosylaminopyrimidine deaminase (Riboflavin-specific deaminase) + 5-amino-6-(5-phosphoribosylamino) uracil reductase (HTP reductase) [Mycobacterium tuberculosis H37Rv] gi|13881067|gb|AAK45718.1| riboflavin-specific deaminase [Mycobacterium tuberculosis CDC1551] gi|124600710|gb|EAY59720.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis C] gi|134149806|gb|EBA41851.1| bifunctional riboflavin biosynthesis protein ribG : diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis str. Haarlem] gi|148505352|gb|ABQ73161.1| riboflavin-specific deaminase [Mycobacterium tuberculosis H37Ra] gi|148721156|gb|ABR05781.1| bifunctional riboflavin biosynthesis protein ribG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis F11] gi|253321044|gb|ACT25647.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 1435] gi|289439432|gb|EFD21925.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 605] gi|289685688|gb|EFD53176.1| riboflavin-specific deaminase [Mycobacterium tuberculosis 02_1987] gi|289709074|gb|EFD73090.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase + 5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis GM 1503] gi|289713079|gb|EFD77091.1| riboflavin-specific deaminase [Mycobacterium tuberculosis T85] gi|298494709|gb|EFI30003.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Mycobacterium tuberculosis 94_M4241A] gi|323720073|gb|EGB29179.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis CDC1551A] gi|326903030|gb|EGE49963.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis W-148] gi|328459289|gb|AEB04712.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis KZN 4207] Length = 339 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 167/364 (45%), Gaps = 40/364 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 242 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + + ++L L R T +L+EGG Sbjct: 243 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 276 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A +F+ + ++ I+ Y + I++G P + N R F S +E +G Sbjct: 277 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 330 Query: 358 NLCL 361 +L L Sbjct: 331 DLLL 334 >gi|308231834|ref|ZP_07663946.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu001] gi|308369792|ref|ZP_07419077.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu002] gi|308370712|ref|ZP_07666996.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu003] gi|308371959|ref|ZP_07667277.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu004] gi|308373132|ref|ZP_07667517.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu005] gi|308374304|ref|ZP_07667756.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu006] gi|308375454|ref|ZP_07668025.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu007] gi|308376713|ref|ZP_07668330.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu008] gi|308377721|ref|ZP_07480168.2| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu009] gi|308378931|ref|ZP_07668864.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu010] gi|308380068|ref|ZP_07669113.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu011] gi|308215903|gb|EFO75302.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu001] gi|308326399|gb|EFP15250.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu002] gi|308331085|gb|EFP19936.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu003] gi|308334898|gb|EFP23749.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu004] gi|308338707|gb|EFP27558.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu005] gi|308342394|gb|EFP31245.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu006] gi|308346232|gb|EFP35083.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu007] gi|308350184|gb|EFP39035.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu008] gi|308354825|gb|EFP43676.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu009] gi|308358776|gb|EFP47627.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu010] gi|308362713|gb|EFP51564.1| riboflavin biosynthesis protein ribG [Mycobacterium tuberculosis SUMu011] Length = 337 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 112/364 (30%), Positives = 167/364 (45%), Gaps = 40/364 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 4 VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 63 RAGGLAAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 121 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q H+T K A S D A S I+ + Sbjct: 122 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 181 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 182 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVL 240 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + + ++L L R T +L+EGG Sbjct: 241 NDEART------------------------MMIRTHEPMEVLRALSDR--TDVLLEGGPT 274 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +A +F+ + ++ I+ Y + I++G P + N R F S +E +G Sbjct: 275 LAGAFLRAGAINRILAYVAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGP 328 Query: 358 NLCL 361 +L L Sbjct: 329 DLLL 332 >gi|296283379|ref|ZP_06861377.1| riboflavin-specific deaminase/reductase [Citromicrobium bathyomarinum JL354] Length = 323 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 128/352 (36%), Positives = 171/352 (48%), Gaps = 46/352 (13%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + DAR++SAA R S ++ NP+V C+IV+ G V+GRG T GG PHAE ALE A Sbjct: 5 TPSDARWLSAAARLSLRGRPASAPNPAVGCVIVQAGRVVGRGWTQAGGRPHAEAMALEMA 64 Query: 64 GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G+ A GA Y TLEPC+H R P C +IE RVV+ DPD R +G+G++ L Sbjct: 65 GDAATGADVYATLEPCAHQSPRGPACTDRLIEARPARVVIGQIDPDPRTAGQGIERLHAA 124 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 GI + L YLTR R H+TLK+A+S D I +A S ITG ++ Sbjct: 125 GIDAVLLDCPHSAASLAGYLTRAALGRPHVTLKLAMSLDGCIALADGTSQWITGEAARAH 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH RA +DAILVG GT AD P L R+ GL++ SP R +L ++ + Sbjct: 185 VHSRRALADAILVGGGTWRADSPRLDVRVPGLEDRSPARWVLTSQ---PIEGA---QTIA 238 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 APV I T L VEGGA A SF Sbjct: 239 APVDIATIPA-----------------------------------QYLYVEGGAQTAASF 263 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDV 350 + + LVD + +YR+ I+IG+G G + E + + V G+D Sbjct: 264 LEADLVDRLEIYRAPILIGDGLRALGGLNLAELAHAHGRWQPVETRQLGADT 315 >gi|42524894|ref|NP_970274.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bdellovibrio bacteriovorus HD100] gi|39577104|emb|CAE78333.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bdellovibrio bacteriovorus HD100] Length = 394 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 106/373 (28%), Positives = 181/373 (48%), Gaps = 29/373 (7%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE-AGE 65 MS A+ + S NP V +++ G + G + G PHAEV AL+ + E Sbjct: 19 EEAMSLAISEAYQGAARVSPNPLVGAVVLDAQGGFLSAGHHEFYGGPHAEVNALKNLSPE 78 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + +GA A+VTLEPC+H G++P CA+ + + +++V + DP+ V+G+G + L Q I Sbjct: 79 QLKGAHAFVTLEPCAHEGKTPSCAKMMAKLPLKKVTFGLIDPNPLVAGQGAEILRQARIE 138 Query: 126 VDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + + E + A+L +K+ ++LK+A S D + + S IT Sbjct: 139 AEVFSSANPVLDAKIKTELEEVCEAFLWNFRKKKVFVSLKMASSLDGQVALRSGESQWIT 198 Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLD-- 233 G S+ VH +RA D ILVG GT+ D+P L R + + + + I++D +L + Sbjct: 199 GPESREYVHYIRACHDGILVGKGTIDFDNPSLNIRHPQITKKNKV-IVVDGEAELLPNFT 257 Query: 234 -SKIIKTALLAPVIIVTENDDPVLALAFRK---KNINIIYCDCR-----DLKKLLTILVG 284 K+ + VI + R K+ +++Y R DL+ LL L Sbjct: 258 KLKLSEVHASEDVIWCVAEELREKVEKLRGTLVKSPDVVYVKTRVGGDLDLEDLLAQLYQ 317 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-----PLEEGYLEKNFM 339 +G+ S++VEGGA A SF++ LV+ + ++++ I++G GG S + + Sbjct: 318 KGLRSVMVEGGAFTASSFVSYHLVNRLYMFQAPIIMGSGGSRSWTESVRISAMTDKIQLK 377 Query: 340 CVRRDYFGSDVCL 352 R FG+D + Sbjct: 378 NPRYLTFGNDFMI 390 >gi|281421474|ref|ZP_06252473.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205] gi|281404546|gb|EFB35226.1| riboflavin biosynthesis protein RibD [Prevotella copri DSM 18205] Length = 345 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 158/365 (43%), Gaps = 46/365 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 + D FM L+ ++ NP V +IV DG +IG G G HAEV A Sbjct: 17 LSQKEIDEMFMRRCLQLAKNGRENAKPNPMVGAVIVSGDGRIIGEGYHVRCGEGHAEVNA 76 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E AT YV+LEPCSHYG++PPCA I+ G++R V DP +V GRG Sbjct: 77 FASVKPEDEHLLSQATIYVSLEPCSHYGKTPPCADLIVRKGVKRCVCGCVDPFAKVQGRG 136 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 ++ + + GI + ++E+E ++T +R +I LK A + + + G + I Sbjct: 137 IRKIREAGIEVTVGVLEAECLELNKRFITFNTHQRPYIILKWAQTANGFLD-NGGRGMAI 195 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + +K H LRA++DAIL+G T D +L R PMR+++D H Sbjct: 196 SSPFTKMLSHKLRAENDAILIGRVTDERDHSQLNVR--DWSGKDPMRLVIDRH------- 246 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 P + ++ L++++ L V SL+VEG Sbjct: 247 --------HPCF----------------EGLDFSRGKTEVLQQIMQYLYNNKVQSLIVEG 282 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIG---EGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 GA +F+++ L D I ++ ++ E + S L N + + + +V Sbjct: 283 GAITHQAFLDAGLWDEIR---AETLLSTSVENSVTSGTPAPMLPHNVRLISHEAYDGNVI 339 Query: 352 LEYIG 356 Y Sbjct: 340 NTYER 344 >gi|326404513|ref|YP_004284595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium multivorum AIU301] gi|325051375|dbj|BAJ81713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium multivorum AIU301] Length = 363 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 140/362 (38%), Positives = 198/362 (54%), Gaps = 10/362 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+ Sbjct: 2 DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G+ Sbjct: 62 AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ + +E + E R +TLK+A S D I S ITG ++ H Sbjct: 122 VVEGIGGAEAAEINAGFCKCIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241 Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + IV + DP A + DL L + G+T +L EGG +A Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAAVGEAGLTRVLAEGGGTLA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + I + LVD + + + +VIG+ GI + +EE F + G D+ Y Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361 Query: 356 GK 357 Sbjct: 362 RD 363 >gi|213027853|ref|ZP_03342300.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 320 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 158/321 (49%), Gaps = 18/321 (5%) Query: 52 CPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 HAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V Sbjct: 1 GAHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQV 60 Query: 112 SGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCG 170 +GRGL L Q GI + +M SE + +L R ++ LK+ S D MA Sbjct: 61 AGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGE 120 Query: 171 SVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSP 219 S IT ++ V LRAQS AIL TVLADDP LT R L P Sbjct: 121 SQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQP 180 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 +RI++D +++ +I++ I T+ D + R ++ + DL L+ Sbjct: 181 VRIVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLM 238 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLE 335 L + + S+ VE G +A + + + LVD +I+Y + ++G LE+ Sbjct: 239 MQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADA 298 Query: 336 KNFMCVRRDYFGSDVCLEYIG 356 F + G DVCL + Sbjct: 299 PQFTFSEIRHVGPDVCLHMVS 319 >gi|212702196|ref|ZP_03310324.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098] gi|212674401|gb|EEB34884.1| hypothetical protein DESPIG_00207 [Desulfovibrio piger ATCC 29098] Length = 380 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 100/376 (26%), Positives = 161/376 (42%), Gaps = 38/376 (10%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 FM AL + NP+V ++V+DG V+ RG G PHAEV+ L +A G + Sbjct: 9 FMREALTLAENGRWSACPNPTVGAVLVRDGQVVARGWHHAAGQPHAEVECLRDAQRQGID 68 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 T VTLEPC+HYG++PPC++ ++ GI+RVV+ + DP + +G G + L G+ V Sbjct: 69 PAQCTLVVTLEPCNHYGKTPPCSEAVLAAGIKRVVIGLYDPTPKAAG-GAERLRAAGVEV 127 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + A + R ++ LK+A + D I S ++ S+ VH L Sbjct: 128 IGPVCEQECRDQVADFLAWQQGRPYVILKMAATMDGRIATRTGHSRWVSSEGSRALVHRL 187 Query: 187 RAQSDAILVGIG-----------TVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSL-D 233 RA GIG T AD+P LT R+ G E P+ +L D Sbjct: 188 RA-------GIGRAGGAVLVGGGTFRADNPCLTARIPGETVEQQPLACVLTSRLPNPAGD 240 Query: 234 SKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGR-G 286 ++K V + + A A R+ + ++ C D + +L Sbjct: 241 IHLLKERPHQAVFLCSPAAAASTAAHALRQMGVRVLALGPGQRGCPDFPAMFHMLYEELH 300 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFMC 340 +L EGG +A S + + D +L+ + ++G+ +PL +G + Sbjct: 301 CPYVLCEGGGHLALSLLEAGFADEFLLHLAPRILGDNEA-APLFDGRSPLTMAEALDLRV 359 Query: 341 VRRDYFGSDVCLEYIG 356 R DV L+ Sbjct: 360 CRTTLCDGDVHLQLRP 375 >gi|323357080|ref|YP_004223476.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium testaceum StLB037] gi|323273451|dbj|BAJ73596.1| pyrimidine reductase, riboflavin biosynthesis [Microbacterium testaceum StLB037] Length = 343 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 107/358 (29%), Positives = 159/358 (44%), Gaps = 38/358 (10%) Query: 4 SSFDARFMSAALRFSRWH-VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 S+ + M AL+ +R GL NP V +I+ G ++ G G HAEV AL Sbjct: 3 SAVEIDAMRRALQLARRGPRGL---NPQVGAVILSPAGEILAEGYHRGAGTAHAEVDALS 59 Query: 62 E-AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + A ARGATA VTLEPC+H GR+ PCA +IE G+ RVV +DDP + G + L Sbjct: 60 QLAPGAARGATAVVTLEPCNHTGRTGPCAVALIEAGVARVVFALDDP-TDAASGGAERLR 118 Query: 121 QKGIIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V++ E E L H ++ R H+ +K A S D S ITG + Sbjct: 119 AAGVDVEQGPEEESAEALVHDWVALTRTGRPHVVVKWAQSLDGRAAADDGTSQWITGPAA 178 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII 237 + VH RA +DAI+ G GTV ADDP LT R P+ +I+ Sbjct: 179 RRDVHARRATADAIVAGTGTVRADDPALTARDEDGSLLPAQPLPVII------------- 225 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 + A R+ ++ DL +L L RG+ + VEGG Sbjct: 226 ------------GESETAPDAAVRRHPREPLFFATHDLSAVLADLGERGIQRVFVEGGPT 273 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F+ + L D +++Y + ++IG + + + G D+ + Sbjct: 274 LASAFVRADLADELLVYVAPVLIGGSRLALGDVGVPTIADARRLAVASVQNLGDDLLI 331 >gi|91763228|ref|ZP_01265192.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1002] gi|91717641|gb|EAS84292.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1002] Length = 366 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 186/361 (51%), Gaps = 10/361 (2%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D FM AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++ Sbjct: 7 KFSIKDKIFMELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIK 66 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 + E G+ YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L+ L Sbjct: 67 NSHENIEGSKMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLKILKS 126 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 K I + +++ + F Y + + ++T KIA+S++N+I + I+ + Sbjct: 127 KNILVKKDLLKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTD 184 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR ++D++++ T+ DDP+L CR+ GL + SP RIILD + ++ +S I KTA Sbjct: 185 KFTHFLRYKNDSLMISSKTLNKDDPKLNCRIKGLSKFSPKRIILDRNLEIKKNSYIFKTA 244 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGA 296 II N + L +KK I +I + D+K +L L G +LLVEGG Sbjct: 245 NKDNTIIFYHNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGN 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGE-GGIPSPLEEGYLEKNFMCVRR--DYFGSDVCLE 353 ++ I +L + LY+ + + L+KN+ + G DV Sbjct: 305 DLSKHIIKKKLFNEFYLYKCSKSLSKLVNHKEFGFLKELKKNYKNKFKINKKLGKDVITL 364 Query: 354 Y 354 Y Sbjct: 365 Y 365 >gi|218673496|ref|ZP_03523165.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli GR56] Length = 419 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 136/251 (54%), Positives = 175/251 (69%), Gaps = 1/251 (0%) Query: 20 WHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPC 79 H+G T+TNPSV CLIVKDG+ +G+ VTA GG PHAE QAL EAG+ ARGATAYVTLEPC Sbjct: 1 RHLGRTATNPSVGCLIVKDGVTVGQAVTALGGRPHAEPQALAEAGQLARGATAYVTLEPC 60 Query: 80 SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFL 138 SH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L GI VD ++++EG+ L Sbjct: 61 SHHGKTPPCAEALIASGVARVVISVTDPDPRVSGRGVSMLRDAGIEVDAGVLQAEGRRSL 120 Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 YLTRQ + R ++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIG Sbjct: 121 AGYLTRQTKNRPYVTLKLAVSADGMIGRKGEGQVAITGPEARAEVQALRAETDAILVGIG 180 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 T ++DDP LT R GL+ SP+RI+LDP L L SK++ TA PVI+V D L Sbjct: 181 TAISDDPLLTVRTPGLEAQSPVRIVLDPSLALPLTSKLVATARDVPVIVVASEDVSPLTA 240 Query: 259 AFRKKNINIIY 269 +++ Sbjct: 241 DVEGIPPSVLP 251 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 58/109 (53%) Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 N+ A + I+YC+ + LL L RG++SLLVEGGA A F+ + LVD Sbjct: 311 TNEVESRRAALEAAGVEIVYCNPYHPEILLPALATRGISSLLVEGGAKTARLFLEAGLVD 370 Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 I LY++ ++IG GI SPL+ + F + FG+D EY ++ Sbjct: 371 RIQLYQAPVIIGADGIESPLDATDIPSGFAHMGTRIFGADRLDEYERES 419 >gi|302541057|ref|ZP_07293399.1| riboflavin biosynthesis protein RibD [Streptomyces hygroscopicus ATCC 53653] gi|302458675|gb|EFL21768.1| riboflavin biosynthesis protein RibD [Streptomyces himastatinicus ATCC 53653] Length = 362 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 15/356 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ + +G TS NP V C+I+ +G G G G PHAEV AL AGE ARG Sbjct: 1 MRRAVALAARGLGHTSPNPVVGCVILDAEGQPAGEGWHQRAGGPHAEVHALRAAGERARG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H GR+ PCA+ +++ GI RV V DP + G + + Sbjct: 61 GTALVTLEPCNHTGRTGPCARALLDAGIARVRYAVADPTGQARGGAATLAAAGVDVAAGP 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + E + A+LT R + K A + D A S IT ++ VH LRA+ Sbjct: 121 LTDEAEAVNEAWLTAMRRGRPFVLWKYAATLDGRSAAADGTSRWITSAAARADVHRLRAE 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248 +DA++VG GT+ ADDP L R P+R+ +D L D++I+ A AP ++ Sbjct: 181 ADAVVVGSGTLRADDPHLAVRDRDGVT-QPLRVAVDTDATALKPDARILDDA--APTLVA 237 Query: 249 TENDDPVLALAFRKKNINIIYC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 D L + D+ LL L RGV S+L+EGG +A +F+ + Sbjct: 238 VAEDADTGHLPAGTDTARLPRARAGRGLDIAALLAALHDRGVRSVLLEGGPTLAGAFLAA 297 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 VD ++ Y + +++G G P+ L + + +R D G D+ + + Sbjct: 298 GAVDKVVGYLAPVLLGAG--PAALADAGITTIAQALRMDTADVTRLGPDLRITAVP 351 >gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis 053442] gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/phosphoribosylamino)uracil reductase [Neisseria meningitidis 053442] Length = 305 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 102/301 (33%), Positives = 153/301 (50%), Gaps = 11/301 (3%) Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A+GATA+VTLEPCSHYGR+PPCA+ ++ G+ RVV + DP+ V+G+GL L GI Sbjct: 2 AQGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKT 61 Query: 127 D-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + ++E + + +L+R +R + LK AVS D ++ S ITG ++ V + Sbjct: 62 ECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQV 121 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 LRA+S A+L GIGTVLAD+P L R P RI+LD +L LDS ++ Sbjct: 122 LRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTY 180 Query: 246 IIVTENDDPVLALAFRKKNINIIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I E D+ L +I I+ DL L+ +L G ++VE G+ + Sbjct: 181 IATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTS 240 Query: 301 SFINSRLVDSIILYRSQIVIGEGG----IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +F+ L D I+LYRS ++G G +P + V + G D+ + Sbjct: 241 AFLAEDLADEIVLYRSPKILGGGSGLFCLPENRAALSAPPLWTPVSSEILGHDIKTVFRK 300 Query: 357 K 357 Sbjct: 301 N 301 >gi|227542162|ref|ZP_03972211.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51866] gi|227181991|gb|EEI62963.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51866] Length = 324 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 118/360 (32%), Positives = 158/360 (43%), Gaps = 42/360 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AA+ VG NP+V C +VK+G VI G T G PHAE+ AL AGE+ARGA Sbjct: 1 MDAAITAGEEAVGRARPNPAVGCALVKNGRVIATGSTQRVGGPHAEIMALRAAGEDARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 TAYVTLEPC+H GR+ PC+ ++E GI VV D + G +L G+ V+ + Sbjct: 61 TAYVTLEPCNHTGRTGPCSLALVEAGIATVVYLTPDTSTPEAAGGGDYLKSHGVEVEYLP 120 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 + G + + R R T+K+A + D S ITG ++ H R++ Sbjct: 121 VAVGALTPWLFAQRNH--RPMFTVKVAHTIDGYAAALDGTSQWITGETARAYAHRDRSRR 178 Query: 191 DAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 DAILVG GT LAD+P LT R L E+ P +I+ + D + +T Sbjct: 179 DAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRP-VPRDYHLYETG-------- 229 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 I D L LV +LVEGG V + + LV Sbjct: 230 ------------------FIQVDT------LEELVQLPYNDILVEGGPGVLSTLFTNDLV 265 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 D+I Y + V+G GIP K F G DV + CLQ L Sbjct: 266 DTIHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVLIVLERHGSCLQGL 324 >gi|148909999|gb|ABR18084.1| unknown [Picea sitchensis] Length = 457 Score = 255 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 107/384 (27%), Positives = 180/384 (46%), Gaps = 40/384 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP DA++M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL Sbjct: 88 MP---EDAQYMRMCISLAKKALGCTSPNPMVGCVIVKDGHIVGQGFHPKAGEPHAEVFAL 144 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG +A GATAYV+LEPC+HYGR+PPC Q +I+ + RVVV + DP+ V+ +G+ L Sbjct: 145 REAGTKAEGATAYVSLEPCNHYGRTPPCTQALIQARVGRVVVGMVDPNPIVASKGVATLR 204 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFI 178 GI + + E + AY+ R + + IT++ ++S D M+ G G+ G+ Sbjct: 205 NSGIDVTVGVEEKLCQTMNEAYIHRILTGKPFITMRFSMSLDGGMLDDLGDGAAEEGGYY 264 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 SK + Q D ++V T L D+ L G P+RI++ L +DS I Sbjct: 265 SK-----MLQQYDGVIVSDQT-LYDNLNLLSSEAGA--KQPLRIVVTRTLVLPIDSLIFN 316 Query: 239 TALLAPVIIVTEND------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 T L +++ E + + R++ + ++ ++ +L I RG Sbjct: 317 TDLAPTLVLADEKAIVDNLQSAGKLNGQTMDMLLRQRGVEVVILKKLEIDSVLDICSQRG 376 Query: 287 VTSLLVEGGAAVAHS---------FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 + S+ ++ +A + + V +++ ++ G + L Sbjct: 377 LCSVFIDSRG-LASAGLENFIGKQALEEEAVQKLVIAICPMI--SGNKRTELNFDIPPAK 433 Query: 338 FMCVRRDYFGSDVCLE--YIGKNL 359 +R DV + Y ++ Sbjct: 434 LNRLRTK-LSKDVAVVEGYFPRDF 456 >gi|54297135|ref|YP_123504.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Paris] gi|53750920|emb|CAH12331.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str. Paris] Length = 357 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 161/357 (45%), Gaps = 7/357 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 3 EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 G T YVTLEPC+H+G++PPC II GI+ VV DP+ V+ + L + GI V Sbjct: 63 PGVTLYVTLEPCNHWGKTPPCVDAIINHGIQEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + F +Y + + +T+KIA + D IG + V ++ + + H + Sbjct: 123 RHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA I Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + DL ++T L G + VE G A+ + + Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361 LV LY +G I + ++G EK V G ++ CL++ ++ CL Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355 >gi|168045667|ref|XP_001775298.1| predicted protein [Physcomitrella patens subsp. patens] gi|162673379|gb|EDQ59903.1| predicted protein [Physcomitrella patens subsp. patens] Length = 602 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 95/369 (25%), Positives = 167/369 (45%), Gaps = 19/369 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+R + A+ ++ GLT+ +P C++V+ V+G G + G AEVQA+EEAGE Sbjct: 19 DSRHLLKAVELAKRSDGLTAPHPKFGCVVVRGRRVVGTGGLSGLGARPAEVQAVEEAGEY 78 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 ARGATA++ LEP G A ++ G+ R+VV + P G+ + L G+ V Sbjct: 79 ARGATAFLNLEPGDCGGDDAAVA-ALVRGGLERIVVGMRHPLPHFRGKAIAALQSAGVKV 137 Query: 127 DRMMES------------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 D E ++ L R TLK A++ D I + S + Sbjct: 138 DVAGEDCGIGGAIEAALKACQLANAPLLYRASHNLPMSTLKYAMTLDGKIAASSGHSAWV 197 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 + S+ +V RAQ DA++VG TV +D+P LT R G H P RI++ L ++ Sbjct: 198 SSADSRRRVFETRAQCDAVIVGGNTVRSDNPNLTTRQAG--GHQPDRIVITRTMNLPREA 255 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + T+ +++ + + + + ++ D + ++ RG S+L E Sbjct: 256 NLWDTSNAHTIVMTEKGANVEFQKHLASRGVEVVQFDLISPRAVMEHCYSRGYLSVLWEC 315 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G ++ I ++ ++ + + V+G P+P+ E + ++ SDV E Sbjct: 316 GGMLSAPAIQGGVIHKVLAFIAPKVVGGLQAPTPVGELGFVQMTQALKL----SDVSFEL 371 Query: 355 IGKNLCLQE 363 G ++ + Sbjct: 372 TGPDMLVTG 380 >gi|222622845|gb|EEE56977.1| hypothetical protein OsJ_06705 [Oryza sativa Japonica Group] Length = 558 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 49/347 (14%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 50 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 109 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 LEP YG S + + E ++V Sbjct: 110 NLEPGDCYGDSTAVSTLVQEALKSCLIV-------------------------------- 137 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L R + LK A++ D I + + ++G S+ +V LR +SDAI+ Sbjct: 138 ---NAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 194 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 195 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 252 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L K + ++ D + + +++ RG S+L E G +A S I++ ++ + + Sbjct: 253 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 312 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +IG P+P+ E + + + DV E I +++ + Sbjct: 313 LAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 355 >gi|52841411|ref|YP_095210.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628522|gb|AAU27263.1| riboflavin biosynthesis protein RibD [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 357 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 3 EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 G T YVTLEPC+H+G++PPC II GI VV DP+ V+ + L + GI V Sbjct: 63 PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +F +Y + + +T+KIA + D IG + V ++ + + H + Sbjct: 123 RHIPVKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNALCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA I Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + DL+ ++T L G + VE G A+ + + Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361 LV LY +G I + ++G EK V G ++ CL++ ++ CL Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355 >gi|149276501|ref|ZP_01882645.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil [Pedobacter sp. BAL39] gi|149233021|gb|EDM38396.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil [Pedobacter sp. BAL39] Length = 332 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 99/346 (28%), Positives = 157/346 (45%), Gaps = 31/346 (8%) Query: 22 VGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------GEEARGATAY 73 +G S NP V C+IV +G +IG G G HAEV A+ ATAY Sbjct: 1 MGNVSPNPMVGCVIVSEGKIIGEGYHEQFGAAHAEVNAINSVWSAYPDQAAALLAQATAY 60 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 V+LEPC+H+G++PPCA +I+ +++VV+ DP V+G+G+ L+ GI ++ ++E Sbjct: 61 VSLEPCAHFGKTPPCADLLIKNQLQKVVIGNRDPFPDVNGKGIAKLNAAGIEVISGILEE 120 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + TR ++R I LK A + + I+ +SK VH R + DA Sbjct: 121 ECTALNIRFFTRISQQRPFIILKWANTANGYFAPKTDIPQWISSPLSKRLVHKWRTEEDA 180 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 LVG T + D+P+L+ R +P+RI++D ++ D + A A II E Sbjct: 181 TLVGKRTAIIDNPQLSAR--DWPGKNPVRILIDRRLEVPADRHLYDAA--AKTIIFNEV- 235 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A+ I + +K+ L + S++++GG + + FI L D Sbjct: 236 --KTAVDGHIHYIQMEDMQYYLPQKIAFQLYLMDIQSVIIDGGVNIINQFIAGGLWDEAR 293 Query: 313 LYRS----QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 ++ S GI SP G + G+D Y Sbjct: 294 VFTSAHSWP-----DGIRSPEINGII------TSVQTIGADTLTIY 328 >gi|296117961|ref|ZP_06836544.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes DSM 20306] gi|295969192|gb|EFG82434.1| riboflavin biosynthesis protein RibD [Corynebacterium ammoniagenes DSM 20306] Length = 355 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 115/355 (32%), Positives = 167/355 (47%), Gaps = 33/355 (9%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 + + A+ G TS NP V ++V G ++G G T G HAEVQAL EA Sbjct: 17 KALRTAMSAGWEVRGTTSPNPPVGAVMVSTAGEIVGTGATQPAGGAHAEVQALAEAVGRT 76 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 GATA VTLEPC H GR+ PC Q +IE GI+ V DP+ +G G + L + G+ V Sbjct: 77 DGATAVVTLEPCRHTGRTGPCTQALIEAGIQEVYYLHSDPNPE-AGGGAEALREAGVNVT 135 Query: 128 RMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E L +L R H+TLK A + D A S ITG +++ VH Sbjct: 136 QLSAPEGMPDALIPWLKSVQLGRPHVTLKFAQTIDGFTAAADGTSQWITGEMARQYVHED 195 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA DAI++G GT L D+P LT R +EH P R+++ ++ Sbjct: 196 RAHRDAIIIGTGTALTDNPSLTARFPDGSQREHQPRRVVIGRR-------RLAD------ 242 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 V EN + L F + + + L L G +LVEGGA +A F+N Sbjct: 243 ---VGENASNLNRLGFEQYAK---------IDEALQELYASGARDVLVEGGAGLASGFMN 290 Query: 305 SRLVDSIILYRSQIVIGEGG--IPSPLEEGYL-EKNFMCVRRDYFGSDVCLEYIG 356 + LVD + +Y++ +++GEG + PL F + G D+ + Y+ Sbjct: 291 AGLVDWVQVYQAPLLLGEGISVLAHPLTNTLKGAARFSRGQVVALGDDLLINYVR 345 >gi|149921258|ref|ZP_01909714.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Plesiocystis pacifica SIR-1] gi|149817918|gb|EDM77380.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Plesiocystis pacifica SIR-1] Length = 366 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 116/365 (31%), Positives = 175/365 (47%), Gaps = 13/365 (3%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M DA +M ALR ++ G T NP V ++VK G+V+GRG + G PHAEV+A Sbjct: 1 MAAKQRDAAHWMGHALRLAKSGTGATYPNPCVGAVLVKKGVVVGRGRSDVTGGPHAEVRA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 L +AG ARGA YVTLEPCSH GR+PPC IIE G+RRV + V+DP V G+G++ L Sbjct: 61 LRQAGAAARGAAMYVTLEPCSHRGRTPPCVDAIIEAGVRRVCIGVEDPAPHVGGKGIRKL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + G+ + + + + YL R +TLK+A S D + A S ITG Sbjct: 121 RRAGLEVEVGVCGDQARSIHAHYLHHVATGRPFVTLKVASSIDGRLATASGDSKWITGAA 180 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI-I 237 ++ H LRA I VG TVL D+P L R + P+ +I D +++ + + Sbjct: 181 ARKSAHRLRALHHGIAVGSETVLRDNPGLDVR--HVDGVDPIPVIFDSRLRVTAAKRAEL 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLV 292 K +++ T + + + D++ L +L R + SL+V Sbjct: 239 KLMRAGVLVLYTARASKTAQARLARTPVEGVEVPGDAEGRVDIEAALELLGARELRSLMV 298 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSD 349 EGG + SF+ + + + +YR+ +++GEG +E G D Sbjct: 299 EGGGKLLGSFVAADAFEELWVYRAPVILGEGRPILAGLAFDEVARAPRLRQHSTRKLGDD 358 Query: 350 VCLEY 354 Y Sbjct: 359 QLTVY 363 >gi|148272143|ref|YP_001221704.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830073|emb|CAN01002.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 356 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 112/358 (31%), Positives = 156/358 (43%), Gaps = 37/358 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE--AG 64 R M L + NP V C+I+ G VI G G HAEV AL + AG Sbjct: 22 ERAMRRGLELAAEGPAW-GPNPRVGCVILDARGRVIAEGRHRGAGSAHAEVDALRQLPAG 80 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARG+TA VTLEPC+H GR+ PCA +IE G+ RV V DP V SG G L GI Sbjct: 81 -AARGSTAVVTLEPCNHTGRTGPCAAALIEAGVARVAYAVADPGVESSG-GAARLRAAGI 138 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 ++D ++ E FL +L R +T K A S D I A S ITG ++ V Sbjct: 139 EVIDGVLADEAAAFLRVWLGSARLGRPFVTAKWASSLDGRIAAADGTSRWITGPAAREDV 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTAL 241 H RA++DAILVG GTVLADDP LT R H P ++L + D+ + Sbjct: 199 HRRRAEADAILVGTGTVLADDPALTARRPDGIPYPHQPAPVVLGDRA-IPDDAAV----- 252 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + +I D + L RG+ + VEGG + + Sbjct: 253 -------------------HRHPRRLIRITGHDPAAAIAELGRRGIRHVFVEGGPTIVSA 293 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + + LVD ++ Y + +++G + +E + G D+ + Sbjct: 294 LVAAGLVDEVVAYLAPVLLGGPRTATGDLGVESMPAAHRLTLISTTRLGDDILVTARP 351 >gi|323343508|ref|ZP_08083735.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269] gi|323095327|gb|EFZ37901.1| riboflavin biosynthesis protein RibD [Prevotella oralis ATCC 33269] Length = 321 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 101/360 (28%), Positives = 155/360 (43%), Gaps = 58/360 (16%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D R+M ++ + + NP V L+ +G +IG G G HAEV Sbjct: 14 TEEDIRYMRRCIQLALNGMQNAKPNPMVGALLACEGRIIGEGYHIRFGEGHAEVNCFASV 73 Query: 64 GEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 +T YV+LEPCSHYG++PPCA II G+RRVVV DP +V GRG+ L Sbjct: 74 KPADEHLLPQSTLYVSLEPCSHYGKTPPCADLIIRNGVRRVVVGCIDPFAQVHGRGIHKL 133 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + GI +V ++E E ++T R +I LK A + + I I+ Sbjct: 134 REAGIEVVVGVLERECLALNKRFITYNTRLRPYIILKWAQTSNGFIDDCFHALS-ISTPF 192 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 +K H LR +SDAILVG T + P L R P+RI+LD Sbjct: 193 TKMLSHKLRVESDAILVGRVTDEREHPMLNVR--HWSGRDPLRIVLDHR----------- 239 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +++ L+T L + V SL+VEGGA Sbjct: 240 ----------------------------------QNIADLMTSLYEKKVQSLIVEGGAKT 265 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 SF+ + L D I + + + + +GG P+P + + +R+D + ++ ++ Sbjct: 266 LQSFLTAGLWDEIRVETAPLTV-KGGTPAP----RIPTDIRLIRQDIYDGNIISVFVKDE 320 >gi|218190720|gb|EEC73147.1| hypothetical protein OsI_07177 [Oryza sativa Indica Group] Length = 577 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 86/347 (24%), Positives = 147/347 (42%), Gaps = 49/347 (14%) Query: 23 GLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYV 74 GLTS +P+ C+I + + V+G G G P AE+ A +EAGE ARGATAY+ Sbjct: 69 GLTSPHPNFGCVIARPQLETDNAEAWVVGEGFLYAQGTPCAELLAAQEAGEHARGATAYL 128 Query: 75 TLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG 134 LEP YG S + + E ++V Sbjct: 129 NLEPGDCYGDSTAVSTLVQEALKSCLIV-------------------------------- 156 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L R + LK A++ D I + + ++G S+ +V LR +SDAI+ Sbjct: 157 ---NAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAII 213 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 214 VGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARR 271 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L K + ++ D + + +++ RG S+L E G +A S I++ ++ + + Sbjct: 272 DLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAF 331 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + +IG P+P+ E + + + DV E I +++ + Sbjct: 332 LAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 374 >gi|270339625|ref|ZP_06005479.2| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM 17361] gi|270334334|gb|EFA45120.1| riboflavin biosynthesis protein RibD [Prevotella bergensis DSM 17361] Length = 365 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 159/372 (42%), Gaps = 61/372 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D R+M L+ +R NP V +IV +DG +IG G G HAEV A Sbjct: 29 DERYMRRCLQLARNGWQNAKPNPMVGAVIVSRDGRIIGEGYHVRCGEGHAEVNAFASVRP 88 Query: 66 E----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E + +T YV+LEPCSH+G++PPCA I++ G+RRVV DP +V GRG+ + + Sbjct: 89 EDEVLLKESTVYVSLEPCSHWGKTPPCADLIVKKGVRRVVCGCIDPFSKVQGRGVAHIRK 148 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGS--------- 171 GI + ++E E ++T EKR +I LK A +++ I A Sbjct: 149 AGIEVTVGVLEQECLELNRRFITFNTEKRPYILLKWAQTENGKIASASVTPAVGSGVSTV 208 Query: 172 -----VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDP 226 + ++ +K VH LRA++DAILVG TV AD P+L R P R++L Sbjct: 209 MTVAPLVLSSAFTKMLVHKLRAENDAILVGHETVRADHPQLNTR--SWSGRDPERLVLAR 266 Query: 227 HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 +D P F D+ KLL L Sbjct: 267 ----------------------CTDDVPQWFKCF------------DDMDKLLQYLYNNR 292 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 SL+VEGGA SF+ L D I + + + EG ++ L N V + Sbjct: 293 RQSLIVEGGAVTLRSFLERGLWDEIRVETAPWSVAEG-----VDAPDLPDNVRLVESHDY 347 Query: 347 GSDVCLEYIGKN 358 + Y N Sbjct: 348 DGNTIQRYFKVN 359 >gi|307609932|emb|CBW99459.1| riboflavin biosynthesis protein RibD [Legionella pneumophila 130b] Length = 357 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 3 EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 G T YVTLEPC+H+G++PPC II GI VV DP+ V+ + L + GI V Sbjct: 63 PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +F +Y + + +T+K+A + D IG + V ++ + + H + Sbjct: 123 RHIPIKAIDVFYKSYAYWTMTHKPRVTVKMAQTFDGKIGKSEGARVVLSNALCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA I Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + +L+ ++T L G + VE G A+ + + Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361 LV LY +G I + ++G EK V G ++ CL++ ++ CL Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355 >gi|148261112|ref|YP_001235239.1| riboflavin biosynthesis protein RibD [Acidiphilium cryptum JF-5] gi|146402793|gb|ABQ31320.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidiphilium cryptum JF-5] Length = 363 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 141/362 (38%), Positives = 200/362 (55%), Gaps = 10/362 (2%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D M AL +R +G T+ NP+V C+IV+ G V+GRG TA GG PHAE +AL AG+ Sbjct: 2 DDLAHMRTALALARRGLGETAPNPTVGCVIVRGGRVVGRGRTAQGGRPHAETEALAAAGD 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPC+H+GR+PPCA ++ GI RVVV + DPD R +G GL L + G+ Sbjct: 62 AARGATAYVTLEPCAHHGRTPPCADALVAAGIARVVVAMTDPDERTNGAGLSRLREAGLE 121 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +V+ + +E + R E R +TLK+A S D I S ITG ++ H Sbjct: 122 VVEGIGGAEAAEINAGFCKRIREGRPLVTLKLATSLDGQIATRTGASQWITGAAARQAAH 181 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 LR DA++VG+GTVLADDPELTCRL G + +R+I+D H ++ LD ++++ A P Sbjct: 182 ALRGTHDAVMVGVGTVLADDPELTCRLEGFRSTPVIRLIVDSHLRIPLDGRLVRGAADHP 241 Query: 245 VIIVT-ENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + IV + DP A + DL L ++ G+T +L EGG +A Sbjct: 242 LWIVHRDGADPARRAALLDLGARLFEVPAAPVGIDLAAALAVVGAAGLTRVLAEGGGTLA 301 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + I + LVD + + + +VIG+ GI + +EE F + G D+ Y Sbjct: 302 AALIRADLVDRLEWFTAPVVIGDDGIGAVAGFGVEELGRAARFTRIDASVCGGDIRTRYR 361 Query: 356 GK 357 Sbjct: 362 RD 363 >gi|54294122|ref|YP_126537.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Lens] gi|53753954|emb|CAH15425.1| Riboflavin biosynthesis protein RibD [Legionella pneumophila str. Lens] Length = 357 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 101/357 (28%), Positives = 162/357 (45%), Gaps = 7/357 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 3 EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQILPQT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 G T YVTLEPC+H+G++PPC II GI VV DP+ V+ + L + GI V Sbjct: 63 PGVTLYVTLEPCNHWGKTPPCVDAIINHGIEEVVFSYFDPNPIVAKSNSSEKLREHGIQV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + +F +Y + + +T+KIA + D IG + V ++ + + H + Sbjct: 123 RHIPIKAIDVFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGARVVLSNSLCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA I Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDTGLVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + +L+ ++T L G + VE G A+ + + Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMNLEAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361 LV LY +G I + ++G EK V G ++ CL++ ++ CL Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355 >gi|148358764|ref|YP_001249971.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Corby] gi|296106809|ref|YP_003618509.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] gi|148280537|gb|ABQ54625.1| riboflavin biosynthesis protein RibD [Legionella pneumophila str. Corby] gi|295648710|gb|ADG24557.1| riboflavin biosynthesis protein [Legionella pneumophila 2300/99 Alcoy] Length = 357 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 100/357 (28%), Positives = 159/357 (44%), Gaps = 7/357 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL ++ G + NPSV + V++G +I + G PHAE L + + Sbjct: 3 EQFLLAALEQAKLGRGFCAPNPSVGAVAVQNGNIIAQAWHRGAGTPHAEQLLLSQIPPQT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 T Y+TLEPC+H+G++PPC II GI VV DP+ V+ + L + GI V Sbjct: 63 PEVTLYITLEPCNHWGKTPPCVDAIINHGIEEVVFAYFDPNPIVAKSNSSEKLREHGIQV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + F +Y + + +T+KIA + D IG + V ++ + + H + Sbjct: 123 RHIPIKAIDAFYKSYAYWTMTHKPRVTVKIAQTFDGKIGKSEGDRVVLSNVLCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA SD IL TV D+P + RL+ P+ I+ D + LS D+ I TA I Sbjct: 183 RAASDVILTSAKTVQMDNPRMNARLDSGVVAKPVAIV-DRNLSLSDDTIIFSTAKHCH-I 240 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + + DL ++T L G + VE G A+ + + Sbjct: 241 YHQPQANQAKTYPNSTHYAMPLQNGLMDLDAIITHLGQLGYHDVWVEAGGAIFSALHSKG 300 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV--CLEYIGKNLCL 361 LV LY +G I + ++G EK V G ++ CL++ ++ CL Sbjct: 301 LVHRTYLYLVPGSLGHQAISAYQQQGIFEK-AHTVSWQAMGDNMIACLDW-QEDECL 355 >gi|241761018|ref|ZP_04759107.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|241374637|gb|EER64098.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 323 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 172/364 (47%), Gaps = 50/364 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60 Query: 60 LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 L + + +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAALPERVVIACRDPDPRTNGQGISK 119 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + GI + ++E + + + +RQ++ R ++TLK+A S D I + S ITG Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ HL R +S+ I+VG T+ D P L RL GL + SP + +L H ++ Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVL-GHGEIPSG---W 235 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 II T D +L+EGGA Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 A +F+ + LVD I+LYR+ I+IG G+ + + G + R G+D Sbjct: 260 TAAAFLKADLVDRILLYRAPILIG-KGLHALADIGLTNLSEAHHRWHLKERRTLGNDQLE 318 Query: 353 EYIG 356 Y+ Sbjct: 319 AYLR 322 >gi|262182497|ref|ZP_06041918.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] Length = 342 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 115/359 (32%), Positives = 156/359 (43%), Gaps = 39/359 (10%) Query: 13 AALRFS----RWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 AL + G TS NP V +I+ G V+G G T G PHAEV AL +AG++A Sbjct: 12 RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 71 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG TA VTLEPC+H GR+ PCAQ +I+ + V DP + G L + GI V Sbjct: 72 RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGGGS-TTLRRAGITVG 130 Query: 128 RMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E L +L R H+TLK A S D S ITG ++ VH Sbjct: 131 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 190 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R Q DAIL+G GT LAD+P LT R L+ P R+++ Sbjct: 191 RTQRDAILIGTGTALADNPSLTARFPDGSLRPQQPRRVVIGSRN---------------- 234 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + L F ++ L L G +LVEGGA +A SF+ Sbjct: 235 --VSHGGKTNLERLGFEHY---------ASPQEALAELYTTGARDILVEGGAGLATSFME 283 Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEYIGKNLC 360 VD I Y +V+GEG G+ + L + + G D+ +EY Sbjct: 284 LGFVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 342 >gi|145224309|ref|YP_001134987.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK] gi|315444641|ref|YP_004077520.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1] gi|145216795|gb|ABP46199.1| riboflavin biosynthesis protein RibD [Mycobacterium gilvum PYR-GCK] gi|315262944|gb|ADT99685.1| riboflavin biosynthesis protein RibD [Mycobacterium sp. Spyr1] Length = 333 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 114/356 (32%), Positives = 169/356 (47%), Gaps = 38/356 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M+AA+ S G T NP V +I+ DG + G G TA G PHAEV AL AGE A G Sbjct: 7 MAAAIVQSERVKGRTYPNPPVGAVILDSDGEIAGVGATAPTGGPHAEVVALRRAGERAAG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H+GR+PPC +I+ G+ V V DP+ +G + + + + Sbjct: 67 GTAVVTLEPCNHFGRTPPCVDALIDAGVAAVAFAVADPNPAAAGGAARLAAAGVRVSAGV 126 Query: 130 MESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + L +L +Q + H+T K A S D A S IT S+ VH RA Sbjct: 127 VADAVTGGPLREWLHKQRTGKPHVTWKFAASVDGRSAAADGTSQWITSEASRADVHRRRA 186 Query: 189 QSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 +DAI+ G GTV ADDP LT RL L +H P+R+++ ++S D+ ++ VI Sbjct: 187 AADAIVAGTGTVFADDPALTARLPDGSLADHQPLRVVVGMR-EISPDATVLNDDSRTMVI 245 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 RD +++ L R T +LVEGG +A +F+ + Sbjct: 246 ------------------------RTRDPHEVIQALTDR--TDVLVEGGPTLAGAFLRAG 279 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357 +D I+ Y + I++G G + +++ + R + G DV L + Sbjct: 280 AIDRILAYVAPILLG--GPVTAVDDVGVSSITQAHRWRFDGMQAIGPDVLLSLVPN 333 >gi|56551372|ref|YP_162211.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ZM4] gi|56542946|gb|AAV89100.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis ZM4] Length = 323 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 116/364 (31%), Positives = 171/364 (46%), Gaps = 50/364 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60 Query: 60 LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 L + + +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDPRTNGQGISK 119 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + GI + ++E + + + +RQ++ R ++TLK+A S D I + S ITG Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ HL R +S+ I+VG T+ D P L RL GL + SP + +L H ++ Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQGLGDRSPKKAVL-GHGEIPSG---W 235 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 II T D +L+EGGA Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 A +F+ LVD I+LYR+ I+IG G+ + + G + R G+D Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIG-KGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLE 318 Query: 353 EYIG 356 Y+ Sbjct: 319 AYLR 322 >gi|118462896|ref|YP_882551.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104] gi|118164183|gb|ABK65080.1| riboflavin biosynthesis protein RibD [Mycobacterium avium 104] Length = 341 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 103/371 (27%), Positives = 166/371 (44%), Gaps = 44/371 (11%) Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57 M S D M A+ S G T NP V +++ + T G HAE+ Sbjct: 1 MTASLGDRLDAAMRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AG+ A G T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G + Sbjct: 61 LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAVADPNPQAAGGAGR 120 Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + ++ E L +L +Q H+T K A S D A S I+ Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 S+ +H RA +DAI+VG GTVLADDP LT RL L + P+R+++ ++ ++ Sbjct: 181 EASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMR-EIPSEA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K++ VI D ++L + R T +L+EG Sbjct: 240 KVLNDDSRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFG 347 G +A +F+ + LV+ I++Y + ++G G+P+ + + D G Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAK----ALRWQFDGVDRVG 329 Query: 348 SDVCLEYIGKN 358 D+ L + ++ Sbjct: 330 PDLLLSLVPRS 340 >gi|227833015|ref|YP_002834722.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] gi|227454031|gb|ACP32784.1| riboflavin biosynthesis protein ribD [Corynebacterium aurimucosum ATCC 700975] Length = 332 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 115/359 (32%), Positives = 156/359 (43%), Gaps = 39/359 (10%) Query: 13 AALRFS----RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 AL + G TS NP V +I+ G V+G G T G PHAEV AL +AG++A Sbjct: 2 RALHVAMGAGEQVRGTTSPNPPVGAVILDSAGQVVGVGATQPPGGPHAEVMALRDAGDKA 61 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RG TA VTLEPC+H GR+ PCAQ +I+ + V DP + G L + GI V Sbjct: 62 RGGTAVVTLEPCNHTGRTGPCAQALIDASVAAVYYLHPDPTPQAGGGS-TTLRRAGITVG 120 Query: 128 RMMES-EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ E L +L R H+TLK A S D S ITG ++ VH Sbjct: 121 QLSAPTERADALEPWLGAVALGRPHVTLKFAQSLDGFTAAVDGSSQWITGEQAREHVHRD 180 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 R Q DAIL+G GT LAD+P LT R L+ P R+++ Sbjct: 181 RTQRDAILIGTGTALADNPSLTARFPDGSLRPQQPRRVVIGSRN---------------- 224 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + L F ++ L L G +LVEGGA +A SF+ Sbjct: 225 --VSHGGKTNLERLGFEHY---------ASPQEALAELYTTGARDILVEGGAGLATSFME 273 Query: 305 SRLVDSIILYRSQIVIGEG-GIPSPLEEGYL--EKNFMCVRRDYFGSDVCLEYIGKNLC 360 VD I Y +V+GEG G+ + L + + G D+ +EY Sbjct: 274 LGFVDRIQAYIGNVVLGEGRGVLTSAVSSNLAGAQRWRRCAVTELGEDLLVEYRKDEKL 332 >gi|71083736|ref|YP_266456.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1062] gi|71062849|gb|AAZ21852.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter ubique HTCC1062] Length = 351 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 111/309 (35%), Positives = 169/309 (54%), Gaps = 7/309 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL ++ GLT NPSV C+IVK+ ++ G T + G PHAE A++ + E G+ Sbjct: 1 MELALNLAKARHGLTGINPSVGCVIVKNNKILSIGQTGFKGTPHAEFNAIKNSHENIEGS 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 YVTLEPCSHYG++PPC II+ I+ VV V+D D +V G+ L L K I + + Sbjct: 61 KMYVTLEPCSHYGKTPPCTNIIIKNKIKEVVYGVEDIDKKVKGKTLNILKSKNILVKKDL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + F Y + + ++T KIA+S++N+I + I+ + H LR + Sbjct: 121 LKKQINKFYAPYFFNRKKNLPYVTGKIAISKNNLI--YSKDTKRISDIHTDRFTHFLRYK 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +D++++ T+ DDP+L CRL GL + SP RIILD + ++ +S I KTA II Sbjct: 179 NDSLMISSKTLNKDDPKLNCRLEGLSKFSPKRIILDRNLEIKKNSYIFKTANKDNTIIFY 238 Query: 250 ENDDPVLALAFRKKNINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 N + L +KK I +I + D+K +L L G +LLVEGG ++ I Sbjct: 239 YNAKAEVKLMLKKKGITLIKSKLNKNSFDIKSILMKLYVLGCRNLLVEGGNDLSKHIIKK 298 Query: 306 RLVDSIILY 314 +L + LY Sbjct: 299 KLFNEFYLY 307 >gi|213965573|ref|ZP_03393767.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum SK46] gi|213951732|gb|EEB63120.1| riboflavin biosynthesis protein RibD [Corynebacterium amycolatum SK46] Length = 350 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 114/361 (31%), Positives = 170/361 (47%), Gaps = 42/361 (11%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DA+ M+ A+ + G T NP + C+I+ GI +G T G HAE QALE AG Sbjct: 15 DAQAMALAIEAGQRVRGTTYPNPPIGCVILDTAGIAVGVAGTEPVGGRHAEPQALEMAGP 74 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A+G TA VTLEPC+H GR+PPC + + G+ RV+ V DP+ +G +WL KGI Sbjct: 75 RAQGGTAVVTLEPCNHIGRTPPCTEALAAAGVSRVIFAVADPNPVAAGGS-EWLRYKGIE 133 Query: 126 VDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + + +L +L Q +R HITLK A + D S ITG ++ +V Sbjct: 134 VVEEFQRDQVAAGYLRPWLHWQRTRRPHITLKTAGTLDGFAAATDRTSQWITGEQARARV 193 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTAL 241 H RA+ AI+VG GTVLAD+P LT R +E P+RI + +++ D+ I Sbjct: 194 HADRARRQAIVVGTGTVLADNPRLTARTPDGEELSTQPLRIAIGTS-EVAADANI----- 247 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + N + D++ L + G+ +LVEGG +A + Sbjct: 248 ---------------------RGDNFRHIRTHDVEVALETMADMGLIDVLVEGGPRLASA 286 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVCLEYI 355 F+ + VD+I Y + +G G P+ E F + G D+ + + Sbjct: 287 FLEADAVDAIESYIAPAFLGAG---LPVTSANHETTITDISRFRTASVETLGDDILITAL 343 Query: 356 G 356 Sbjct: 344 R 344 >gi|311742370|ref|ZP_07716179.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM 15272] gi|311313998|gb|EFQ83906.1| riboflavin biosynthesis protein RibD [Aeromicrobium marinum DSM 15272] Length = 344 Score = 252 bits (644), Expect = 7e-65, Method: Composition-based stats. Identities = 109/357 (30%), Positives = 167/357 (46%), Gaps = 36/357 (10%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S + R M AL +R G NP+V C+++ G I G T G HAEV+AL Sbjct: 3 SEHEIRAMRRALDLAR-DRGSCLPNPTVGCVLLDVHGEEISAG-TTVPGGAHAEVEALTA 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATA VTLEPC+H+G + PC + ++ G+ RVVV DP+ V+ G++ L + Sbjct: 61 AGERARGATAVVTLEPCAHHGNTGPCVEALVGAGVARVVVAETDPNP-VAAGGVEALRRA 119 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ + ++ E + A+ R +T K A + D + S ITG ++ Sbjct: 120 GLEVETGILGDEVEPLNRAWRFAVTRGRPFVTWKYAATLDGLSAAPDGSSQWITGPEARR 179 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKII 237 V + RAQ DAI+ G G VLADDP LT R L +E P+R+++ + ++ Sbjct: 180 DVQVFRAQCDAIVAGTGAVLADDPRLTVRGTDDLPVARERQPLRVVV-GETTIPSYYRVF 238 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 +AP + RD +L+ LV R + + +EGG Sbjct: 239 D--RVAPTL----------------------QVPSRDPAAVLSTLVERDIRHVWLEGGPR 274 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KNFMCVRRDYFGSDVCL 352 +A +F N+ L+D +I Y + ++G G E L + G D+ + Sbjct: 275 LAGAFWNAGLIDRVIGYIAPSMLGSGRAALEGEATTLADLRPIDITDLTRIGPDIRI 331 >gi|296170729|ref|ZP_06852302.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894612|gb|EFG74348.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 340 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 108/365 (29%), Positives = 166/365 (45%), Gaps = 39/365 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL 60 P DA M A+ S+ G T NP V +++ G V+ T G HAEV AL Sbjct: 4 PAHGLDAA-MRLAIEQSKQVKGTTYPNPPVGAVVLDAGGVVVGVGGTEPAGGDHAEVLAL 62 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG+ A G TA VTLEPC+H+GR+PPC ++E + VV V DP+ +G + Sbjct: 63 RRAGDLAAGGTAVVTLEPCNHHGRTPPCVNALLEAKVATVVYAVADPNPAAAGGAARLAE 122 Query: 121 QKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + ++ E L +L +Q H+T K A S D A S I+ S Sbjct: 123 AGVQVTGGVLADEVAGGPLREWLHKQRTGSPHVTWKYASSVDGRSAAADGTSQWISSEAS 182 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 + +H RA +DAI+VG GTVLADDP LT RL L P+R+++ ++ ++K++ Sbjct: 183 RLDLHRRRATADAIVVGTGTVLADDPTLTARLPDGSLAARQPLRVVVGMR-EIPSEAKVL 241 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 VI D +++ L R T +L+EGG Sbjct: 242 NDDSRTMVI------------------------RTHDPMEVIKALSDR--TDVLLEGGPT 275 Query: 298 VAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F+ + +V+ I++Y + +++G + P L F V D G D+ L Sbjct: 276 LAGAFLRAGVVNRILVYVAPMLLGGPVSAVDDVGVPTIARALRWQFDGV--DRVGPDLLL 333 Query: 353 EYIGK 357 + + Sbjct: 334 SLVPR 338 >gi|254822405|ref|ZP_05227406.1| riboflavin biosynthesis protein RibD [Mycobacterium intracellulare ATCC 13950] Length = 341 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 103/369 (27%), Positives = 163/369 (44%), Gaps = 40/369 (10%) Query: 1 MPVSSFD--ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57 M VS D M A+ S G T NP V +I+ G + T G HAE+ Sbjct: 1 MTVSPGDGLDAAMRLAIEQSTLVKGTTYPNPPVGAVILDAGGEVVGVGGTEPAGGDHAEI 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AG+ A G T VTLEPC+HYG++PPC +++ + VV V DP+ + +G + Sbjct: 61 LALRRAGDLAAGGTVVVTLEPCNHYGKTPPCVNALLDANVATVVYAVADPNPQAAGGAAR 120 Query: 118 WLSQKGIIVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + ++ E L +L +Q H+T K A S D A S I+ Sbjct: 121 LEEAGVAVRSGVLADEVARGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSQWISS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 S+ +H R DAI+VG GTVLADDP LT RL L P+R+++ ++ ++ Sbjct: 181 EASRLDLHRRRGACDAIVVGTGTVLADDPALTARLPDGSLAARQPLRVVVGMR-EIPSEA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K++ + D ++L + R T +L+EG Sbjct: 240 KVLNDDSRT------------------------MLIRTHDPAEVLKAVSDR--TDVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSD 349 G +A +F+ + VD I+ Y + ++G G + +++ + +R D G D Sbjct: 274 GPTLAGAFLRAGAVDRILAYVAPTLLG--GPVTAVDDVGVSTIARALRWQFDGIDRVGPD 331 Query: 350 VCLEYIGKN 358 V L + ++ Sbjct: 332 VVLSLVPRS 340 >gi|317124749|ref|YP_004098861.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Intrasporangium calvum DSM 43043] gi|315588837|gb|ADU48134.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Intrasporangium calvum DSM 43043] Length = 378 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 113/368 (30%), Positives = 165/368 (44%), Gaps = 26/368 (7%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL 60 P S DA M A+ + NP V C+IV + G V+ G G PHAE AL Sbjct: 8 PQSPVDAARMLRAIALAERS-PWPDPNPRVGCVIVDRAGEVVAEGWHRGAGTPHAEAAAL 66 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE ARG TAYV+LEPC+H GR+ PC+ ++E G+ RVV DP+ + G L Sbjct: 67 ALAGERARGGTAYVSLEPCAHRGRTGPCSDALVEAGVARVVYAQADPNAE-ASGGADVLR 125 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ IV ++ E ++ R +T K A + D A S ITG + Sbjct: 126 AAGVQIVGGLLADEAAALNDRWVRTITLGRPLVTWKFAATLDGRSAAADGSSQWITGPAA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + VH LRA DAI+ G GTVLADDP LT R P ++ + + Sbjct: 186 RADVHALRATRDAIVAGTGTVLADDPRLTVR--------PDTVVAPTDRRTGPEVAPGAA 237 Query: 240 ALLAPV------IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 A PV ++V P A +++ RD+ +L L RGV + +E Sbjct: 238 AAPGPVGSQPLRVVVGLRAVPPSARVHAGPG-EVLHLRTRDVHAVLAALWSRGVREVWLE 296 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGS 348 GG +A +F + LVD + Y + ++G G P+ + + + + G+ Sbjct: 297 GGPTLAAAFWAADLVDDVYAYLAPALLGAG--PAAVGDLGIRSIDGIRRLEITDVSQVGA 354 Query: 349 DVCLEYIG 356 DV + + Sbjct: 355 DVRVHAVP 362 >gi|329946974|ref|ZP_08294386.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon 170 str. F0386] gi|328526785|gb|EGF53798.1| riboflavin biosynthesis protein RibD [Actinomyces sp. oral taxon 170 str. F0386] Length = 400 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 93/329 (28%), Positives = 145/329 (44%), Gaps = 38/329 (11%) Query: 26 STNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSH 81 NP V C+I+ DG V+ G G HAEV AL AG A+G TA VTLEPC H Sbjct: 41 GPNPRVGCVILSADGDVLAEGHHRGAGTAHAEVDALTNLAAAGASAQGTTAVVTLEPCDH 100 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHA 140 GR+ PC Q ++ G+ V+ DDP +G G L G+ + + + Sbjct: 101 EGRTGPCVQALLAAGVAEVIYAQDDP-TEQAGGGAATLEAAGVRVRRGLCSQDAARLNRP 159 Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + R +T K+A + D I A S IT ++ H LR Q DA++VG GT Sbjct: 160 WFLAVTRGRPMVTWKLAATLDGRIAAADGTSRWITPAAARRDAHHLRRQCDAVMVGTGTA 219 Query: 201 LADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 LADDP LT R P+R+++ +L S+++ Sbjct: 220 LADDPALTVRDETGEPAPTHLQPLRVVVGSR-RLPPASRVLADD---------------- 262 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + + D + +L +L R + +L+EGG +A +F+ + +VD ++ Y + Sbjct: 263 ---------HYLLLPDHDPRTVLAVLAEREIRHVLLEGGPTLATAFLRAGVVDEVVAYTA 313 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDY 345 ++G G P+ L + +R + Sbjct: 314 PALLGAG--PAALADFGATTITDALRLRH 340 >gi|31335381|emb|CAD89884.1| riboflavin biosynthesis protein ribD [Bacillus cereus] Length = 209 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 83/207 (40%), Positives = 119/207 (57%), Gaps = 1/207 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQXYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKKRLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++E E + + KR +T+K A+S D S IT ++ VH Sbjct: 123 TTGVLEEEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITSEDARADVHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN 212 R DAILVG+ TV+AD+P LT R+ Sbjct: 183 YRHTHDAILVGVNTVIADNPHLTTRIP 209 >gi|291003622|ref|ZP_06561595.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] Length = 348 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 108/354 (30%), Positives = 159/354 (44%), Gaps = 34/354 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ + G TS NP V C+++ + T G PHAEV AL EAGE ARG Sbjct: 17 MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 76 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA VTLEPCSH GR+PPC ++ G+ RVV V DP V+ G L G+ V Sbjct: 77 GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 135 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E L A+L R H+T K A + D A S I+ ++ +VH LR Sbjct: 136 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 195 Query: 188 AQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DA++ G GTVLADDP+LT R GL EH P+R+++ + ++++ Sbjct: 196 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRP-VPAGARVLDDTAET-- 252 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + D +L L GRG +L+EGG +A +F + Sbjct: 253 ----------------------LLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAA 290 Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +D ++ Y + ++G G + + + G DV + + Sbjct: 291 GRIDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 344 >gi|237785569|ref|YP_002906274.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase [Corynebacterium kroppenstedtii DSM 44385] gi|237758481|gb|ACR17731.1| diaminohydroxyphosphoribosylaminopyrimidinedeaminase [Corynebacterium kroppenstedtii DSM 44385] Length = 357 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 108/353 (30%), Positives = 165/353 (46%), Gaps = 35/353 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M A G TS NP V +I+ DG ++G+G T G PHAEV A+ +AG+ Sbjct: 21 EHAMDRAAELGWEAKGTTSPNPPVGAVIIDADGRIVGQGHTQPAGGPHAEVMAVRDAGDA 80 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GATA VTLEPC+H GR+ PC ++ GI VV V DP+ ++ G + L++KG+ V Sbjct: 81 TAGATAIVTLEPCAHTGRTGPCTDVLLSAGISTVVYAVPDPNP-IAHGGHEVLAEKGLTV 139 Query: 127 DRMMESEGKIF--LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 ++ L ++L R R+ +TLK+A + D + S IT ++N VH Sbjct: 140 IGGFHADEVRRGALRSWLHRIGTGRAMVTLKVAATLDGRVAAPDGTSQWITSADARNYVH 199 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA DA++VG GTV+AD+P LT R L H P +I+ + ++KI Sbjct: 200 RDRATRDALIVGTGTVIADNPRLTARKPDGTLYAHQPDHVIVGSRP-VPEEAKIF----- 253 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + D DL ++ L +G LL+EGG +A + Sbjct: 254 --------------------AHARSWHFDTHDLSHVIQELTQQGYVDLLIEGGPMLASAA 293 Query: 303 INSRLVDSIILYRSQIVIGEG--GIPSP-LEEGYLEKNFMCVRRDYFGSDVCL 352 + +VD I Y + ++G G I P + ++F G D+ + Sbjct: 294 LEQGVVDQIHWYVAPSILGSGLPAIQIPRVSTLTDRRDFTIEHITQLGPDLLV 346 >gi|309810737|ref|ZP_07704545.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185] gi|308435368|gb|EFP59192.1| riboflavin biosynthesis protein RibD [Dermacoccus sp. Ellin185] Length = 340 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 154/330 (46%), Gaps = 36/330 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M A + + NP V C++V DG+++ G G HAE A+ EA G + Sbjct: 1 MERAAQLAALS-PRVDPNPRVGCVVVDADGVILAEGYHRGAGTWHAEAAAINEAIATGVD 59 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 RGATAYVTLEPC+H GR+P CA+ +I G+ RVV DP+ + G Q L + G+ V Sbjct: 60 LRGATAYVTLEPCAHTGRTPSCARALIRAGVARVVFGQPDPN-GAAAGGAQILREAGVAV 118 Query: 127 DRMM--ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 +++ + + + R + K A + D + S ITG ++ VH Sbjct: 119 EQVDTLAAASRDLNADWTFSVTHARPFVRWKYASTLDGFSAASDGTSQWITGPAARVDVH 178 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALL 242 RA+ AI+VG GTVLADDP+LT R + P+R+++ + ++++ A Sbjct: 179 AQRAEHGAIVVGTGTVLADDPQLTVRDAQGRAGVQQPLRVVV-GDTPIPDTARVLDDAAS 237 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + +L L RG+ ++ +EGG +A F Sbjct: 238 T------------------------LVLPRQSPTDVLAALHARGIHAVWLEGGPTLAAVF 273 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 + + LVD I+ Y + ++G G P+ + G Sbjct: 274 LRAGLVDEIVAYLAPALLGA-GRPAAADLG 302 >gi|134098691|ref|YP_001104352.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] gi|133911314|emb|CAM01427.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharopolyspora erythraea NRRL 2338] Length = 345 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 108/354 (30%), Positives = 159/354 (44%), Gaps = 34/354 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQALEEAGEEARG 69 M A+ + G TS NP V C+++ + T G PHAEV AL EAGE ARG Sbjct: 14 MRTAIGAAEGVRGTTSPNPPVGCVVLDAAGAVAGIGATRPPGGPHAEVVALREAGERARG 73 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR- 128 TA VTLEPCSH GR+PPC ++ G+ RVV V DP V+ G L G+ V Sbjct: 74 GTAVVTLEPCSHTGRTPPCTDALLAAGVARVVHAVSDPMP-VAAGGADILRAAGVEVHSG 132 Query: 129 -MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + E L A+L R H+T K A + D A S I+ ++ +VH LR Sbjct: 133 LLAEEAESGPLRAWLHFARTGRPHVTWKYAATLDGRSAAADGTSKWISSPEARAEVHELR 192 Query: 188 AQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DA++ G GTVLADDP+LT R GL EH P+R+++ + ++++ Sbjct: 193 RRMDAVVAGTGTVLADDPQLTARTPEGGLHEHQPLRVVVGNRP-VPAGARVLDDTAET-- 249 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + D +L L GRG +L+EGG +A +F + Sbjct: 250 ----------------------LLLPASDPDTVLAELAGRGAVDVLLEGGPVLAGAFAAA 287 Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +D ++ Y + ++G G + + + G DV + + Sbjct: 288 GRIDRVLGYIAPALLGSGRAALGDAGVGSISQAFRLHVEQVTMVGPDVRVSAVP 341 >gi|50954248|ref|YP_061536.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950730|gb|AAT88431.1| riboflavin-specific deaminase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 341 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 109/354 (30%), Positives = 167/354 (47%), Gaps = 35/354 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE-AR 68 M AALR + NP V C+++ DG I +G G PHAE AL + E AR Sbjct: 7 MRAALRLAANG-PAAGVNPRVGCVLLDADGRTIAKGFHRGAGTPHAEADALGKLPEGGAR 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 G TA VTLEPC+H+GR+ PC++ +++ G+ RVV + DP R S G + L Q G+ + Sbjct: 66 GTTAVVTLEPCNHWGRTGPCSEALLDAGVARVVYGIADPGER-SRGGAERLRQGGVEVTG 124 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++ +E + FL +LT R HIT+K A S D A S ITG ++ +VH R Sbjct: 125 GVLAAEIEEFLDDWLTVARLGRPHITVKWASSLDGRTAAADGTSRWITGTAARQRVHEQR 184 Query: 188 AQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 SDAI+VG GTVLADDP LT R L P +++ + D+ + + Sbjct: 185 EASDAIVVGTGTVLADDPSLTARGDAGELLPRQPTPVVVGTRA-VPGDAAVFRHPQP--- 240 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I DL +++ L RG + VEGG ++ +F+ + Sbjct: 241 ---------------------VIVEKTHDLVEVVADLHQRGFRRVYVEGGPTLSGAFVAA 279 Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 LVD +Y + ++G + + ++ + + G D+ L + Sbjct: 280 GLVDEYAIYLAPSLLGGPQLALGDIGVTTIGEQRRLRLLNVERLGGDLHLRAVP 333 >gi|303238038|ref|ZP_07324581.1| riboflavin biosynthesis protein RibD [Prevotella disiens FB035-09AN] gi|302481828|gb|EFL44880.1| riboflavin biosynthesis protein RibD [Prevotella disiens FB035-09AN] Length = 335 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 102/363 (28%), Positives = 163/363 (44%), Gaps = 45/363 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ ++ NP V +IV DG +IG G G HAEV A Sbjct: 3 MKQEDRDEMYMCRCLQLAKNGRLNAKPNPMVGAVIVSHDGKIIGEGYHVRCGEGHAEVNA 62 Query: 60 LEEAG----EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +T YV+LEPCSHYG++PPCA I+ G+RR+V DP V GRG Sbjct: 63 FHSVRPTDEHLLSESTIYVSLEPCSHYGKTPPCADLIVRKGVRRMVCGCVDPFSEVQGRG 122 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG-----MAGC 169 ++ + Q GI + ++E E ++ R R +I LK A ++D IG A Sbjct: 123 IERIRQAGIEVKVGVLEQECLALNREFIVRNTLHRPYILLKWAQTEDGFIGYSAAEAAEK 182 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 G++ I+ +K VH LRA D I+VG T + P+LT R +P++I++ + Sbjct: 183 GTLFISNGFTKMLVHKLRAAYDGIVVGRVTNDLEQPKLTVR--EWSGANPLKIVMTSKAE 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 ++ +N+ + ++ + + + V S Sbjct: 241 TMQNA---------------------------DENVLFVSSPKAMIEAIGKLERTKPVCS 273 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 ++VEGGA SFI+ L D I + + I G+ +P L +N V+R+++G+ Sbjct: 274 VIVEGGAQTLQSFIDENLFDEIRVETAPFSI-HKGVAAP----QLPQNIEVVKREFYGNS 328 Query: 350 VCL 352 + Sbjct: 329 IVT 331 >gi|254775815|ref|ZP_05217331.1| riboflavin biosynthesis protein RibD [Mycobacterium avium subsp. avium ATCC 25291] Length = 341 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 104/369 (28%), Positives = 166/369 (44%), Gaps = 40/369 (10%) Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57 M S D M A+ S G T NP V +++ + T G HAE+ Sbjct: 1 MTASLGDRLDAAMRLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AG+ A G T VTLEPC+H+G++PPC ++E G+ VV + DP+ + +G + Sbjct: 61 LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVSTVVYAIADPNPQAAGGAGR 120 Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + ++ E L +L +Q H+T K A S D A S I+ Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 +S+ +H RA +DAI+VG GTVLADDP LT RL L + P+R+++ ++ ++ Sbjct: 181 EVSRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMR-EIPSEA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K++ VI D ++L + R T +L+EG Sbjct: 240 KVLNDDSRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGE-----GGIPSPLEEGYLEKNFMCVRRDYFGSD 349 G +A +F+ + LV+ I++Y + ++G + P L F V D G D Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPAIAKALRWQFDGV--DRVGPD 331 Query: 350 VCLEYIGKN 358 + L + ++ Sbjct: 332 LLLSLVPRS 340 >gi|330943560|gb|EGH45897.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. pisi str. 1704B] Length = 245 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 138/238 (57%), Gaps = 11/238 (4%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 V LRAQS +L G TVLAD LT R + L +P+R+++D + Sbjct: 185 AVQRLRAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLR 242 >gi|269956518|ref|YP_003326307.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica DSM 15894] gi|269305199|gb|ACZ30749.1| riboflavin biosynthesis protein RibD [Xylanimonas cellulosilytica DSM 15894] Length = 350 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 162/352 (46%), Gaps = 37/352 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEE 66 M AL + NP V C+++ DG VIG G G PHAEV AL +A G + Sbjct: 16 MDRALTLAARGPAH-GPNPRVGCVLLAPDGTVIGEGWHRGAGTPHAEVAALHDAHTRGCD 74 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGATA VTLEPC+H GR+ PCAQ +++ GI VV +DDP R G G L GI + Sbjct: 75 PRGATAVVTLEPCNHTGRTGPCAQALVDAGITDVVHAIDDPGARSGG-GADHLRAHGIRV 133 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + +H + R +TLK A + D + + S ITG ++ H Sbjct: 134 TSEVRAAAALELVHHWHHAVTAGRPWVTLKTATTLDGRVAASDGTSKWITGPEAREHAHS 193 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 +RAQ DAI V GT LADDP LT R GL H P+R+++ H L +++ Sbjct: 194 VRAQVDAIAVTTGTALADDPALTARTPDGGLAAHQPLRVVV-GHRDLPPGARL------- 245 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 R + ++ D+ +L L R + LLVEGG A+A + + Sbjct: 246 -----------------RDDDAETLHLRTHDVHHVLAALHDREIRHLLVEGGPALATALL 288 Query: 304 NSRLVDSIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + VD + Y + +++G+G P + + G D+ + Sbjct: 289 AADAVDELHAYIAPVILGDGRPAVAPFGVTTLAAAPRWHTTDTHRLGDDILV 340 >gi|145348534|ref|XP_001418702.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578932|gb|ABO96995.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 429 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 94/383 (24%), Positives = 150/383 (39%), Gaps = 31/383 (8%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V+ DA M+ +R G+ + +P AC + + DG V+ A G AE+ + Sbjct: 51 VTPRDAEIMTRVCELARAREGIAAPHPLSACAVTRGDGDVVVEATHAGQGSTRAEIACAD 110 Query: 62 EAGEEARGATA--------YVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 E RGAT YV LEP + + G R VV + P + Sbjct: 111 EM--RRRGATLNSSDRGTVYVNLEPAHGEVAGETRSVEALAATGATRAVVGMLHPLPGLR 168 Query: 113 GRGLQWLSQKGIIVDRMMES----------EGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 GR ++ L ++GI V + + A L R K A++ D Sbjct: 169 GRAVRALRERGIEVCVLEGEAEGFEGEAARACRETNEALLYRVATGLPFSVYKYAMTLDG 228 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 I S +TG ++ V R ++DA++VG GTV D+P LTCR P R+ Sbjct: 229 KIATDTGHSSWVTGAEAREMVFRERKRADAVVVGGGTVRKDNPRLTCREE--TGFQPARV 286 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRDLKKLLTI 281 +L L D+K+ +AP I+ T P A R K + ++ D Sbjct: 287 VLTRSLDLPEDAKLWNVRGVAPTIVCTTKGVKPEFQNALRAKGVEVVEFDELTPLAAAQY 346 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPSPLEEGYLEK---- 336 + RG E G +A + S + ++ + + ++G G P+PL +E Sbjct: 347 MFKRGFLRCFWECGGGLAAPAMKSGVFHEVLAFIAPKLVGGGALAPTPLGNLGIEAMHDA 406 Query: 337 -NFMCVRRDYFGSDVCLEYIGKN 358 VR + +G D+ + N Sbjct: 407 LPLSGVRLEIYGRDILIRGYVPN 429 >gi|288800423|ref|ZP_06405881.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299 str. F0039] gi|288332636|gb|EFC71116.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 299 str. F0039] Length = 341 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 152/365 (41%), Gaps = 58/365 (15%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 ++ R+M + + NP V +IV DG +IG G G HAEV A Sbjct: 28 TTNATHERYMQRCIDLALNGKEGAKPNPMVGSVIVVDGRIIGEGYHIEYGKAHAEVNAFA 87 Query: 62 EAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + AT YV LEPCSH+G++PPCA II G+++VVV DP V GRG++ Sbjct: 88 SVDAKDEHLLPKATLYVNLEPCSHFGKTPPCADLIISKGVKKVVVGCVDPYSEVRGRGIE 147 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L + G+ ++ ++E E ++T +R +I LK A + D I + I+ Sbjct: 148 RLRKAGVKVLVGVLEKECLFLNRFFITSNTHQRPYIILKWAQTLDGFIDC-DGEATAISI 206 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKI 236 + VH LRA+SDAILVG T + P L R P +++L Sbjct: 207 PFTSMLVHKLRAESDAILVGNNTEKKERPRLNVR--HWSGQDPKKVVLSSK--------- 255 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 LK+LL+ L + SL+VEGG Sbjct: 256 ------------------------------------TTLKELLSSLHAENIQSLMVEGGL 279 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +SFI + L D I + + +G G +P + N + + + + ++ Sbjct: 280 KTHNSFIEADLWDEIHIETAPFTVG-NGTHAP----QIPANAKLIEHEDWDGNQTFVFVK 334 Query: 357 KNLCL 361 ++ L Sbjct: 335 ESGLL 339 >gi|315607126|ref|ZP_07882130.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574] gi|315251180|gb|EFU31165.1| riboflavin biosynthesis protein RibD [Prevotella buccae ATCC 33574] Length = 322 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 103/361 (28%), Positives = 156/361 (43%), Gaps = 60/361 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +FM L+ +R NP V +IV DG +IG G G HAEV A Sbjct: 9 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVCP 68 Query: 66 EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + + Sbjct: 69 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 128 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E ++ R +ITLK A + D + ++PI+ +K Sbjct: 129 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDH-GRALPISSPFTK 187 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LRA++DAILVG T + P L R P RI+L ++ Sbjct: 188 MLSHKLRAENDAILVGRVTEEREHPRLNVR--EWSGPDPERIVLGHGASVT--------- 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +L L SLLVEGGA Sbjct: 237 ------------------------------------GILARLYEEKKQSLLVEGGAQTLQ 260 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 SF+++ L D + + + I +G+ G P+P L + + + + ++V + + G Sbjct: 261 SFLDADLWDELRVETAPITVGD-GTPAP----SLPDSAVPTGQQIYDANV-IRWYGHESS 314 Query: 361 L 361 + Sbjct: 315 M 315 >gi|295839977|ref|ZP_06826910.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74] gi|295827729|gb|EFG65559.1| riboflavin biosynthesis protein RibD [Streptomyces sp. SPB74] Length = 364 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 168/353 (47%), Gaps = 14/353 (3%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 A+ + +G T NP V C+++ G V G G + PHAE+ AL A E + Sbjct: 11 REAIALAARGLGRTRHNPVVGCVVLDASGEVAGSGWHSGAAVPHAEIHALARAEELSGVD 70 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + G L G+ + + Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVYAVADP-TDQATGGAGTLRAAGLDVEHGL 129 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E+E A+LT R H+T K A S D A S IT ++ VH LRA Sbjct: 130 LEAEAADVNAAWLTSARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLAPVIIV 248 DA+LVG GT ADDP L R P+R++LD + ++++ A AP +I Sbjct: 190 CDAVLVGSGTARADDPHLAVR-GVPGAPQPLRVVLDTEGTAVRAGARVLDDA--APTLIA 246 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 +D P A + DL LL L R V +L+EGGA +A SF+ + Sbjct: 247 LADDAPAPAHGAELLRLPRAAHGGLDLTALLAALYARDVRGVLLEGGARLAGSFVAAGCA 306 Query: 309 DSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIG 356 D ++ Y + +++G G P+ L + +R D G D+ + + Sbjct: 307 DRVVGYLAPVLLGAG--PAALTGAGITTLTAALRLDVRDSTRLGPDLRITAVP 357 >gi|183982231|ref|YP_001850522.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium marinum M] gi|183175557|gb|ACC40667.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium marinum M] Length = 339 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 40/360 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M A+ S G T NP V +IV +G V+G G T G HAEV AL +AG Sbjct: 10 EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGRVVGIGGTQPSGGDHAEVVALRKAGGL 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA A VT+EPC+H+G++PPC +IE + V+ V DP+ ++G G LS G+ V Sbjct: 70 AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGLQV 128 Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ L +L +Q H+T K A S D A S I+ ++ +H Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA SDAI+VG GTVL DDP LT RL L P+R+++ + ++K++ Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVLNDDAR 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + ++L L R T +L+EGG +A +F Sbjct: 248 T------------------------MMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAF 281 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGK 357 + + ++ I+ Y + I++G G + +++ + +R + G D+ L + + Sbjct: 282 LRAGAINRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLVSR 339 >gi|300858536|ref|YP_003783519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium pseudotuberculosis FRC41] gi|300685990|gb|ADK28912.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium pseudotuberculosis FRC41] gi|302206248|gb|ADL10590.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis C231] gi|302330806|gb|ADL21000.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis 1002] gi|308276490|gb|ADO26389.1| Riboflavin biosynthesis protein ribD [Corynebacterium pseudotuberculosis I19] Length = 373 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 151/351 (43%), Gaps = 38/351 (10%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A+ G TS NP V IV G ++G G T G PHAEV AL+ AG ARGAT Sbjct: 54 EAVAQGELAQGSTSPNPPVGAAIVSAQGDIVGVGYTQPVGGPHAEVMALQSAGGAARGAT 113 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 VTLEPC H GR+ PC Q +++ GI VV C+ DP R G G ++L + G+ V + Sbjct: 114 IVVTLEPCQHQGRTGPCTQALLDAGIAEVVYCLKDPG-RKEGGGHEFLQKNGVRVTFL-- 170 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 L +L Q +R ++ K A + D I S IT ++++ R D Sbjct: 171 DVPVRALRPWLQAQKLQRPYVVGKSAHTVDGFIAAVDGTSQWITSEVARSYAISQRKLFD 230 Query: 192 AILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG GT LAD+P LT R +E P+R+++ L ++ + P ++ Sbjct: 231 AIVVGTGTALADNPRLTARGPKGEETPWQPLRVVIGSRA-LPENAHLSD-----PTVV-- 282 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 DL L L +G +L+EGGA + S ++D Sbjct: 283 ---------------------KFLDLVVALRYLWDKGCRYVLLEGGAGLITSAFERDIID 321 Query: 310 SIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 Y + + +G G S + R + G DV + Sbjct: 322 EFHDYSAPLFLGSGKNALDHSISSTLSTAVHMHTQRVELLGEDVLRILVRD 372 >gi|281424669|ref|ZP_06255582.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302] gi|281401039|gb|EFB31870.1| riboflavin biosynthesis protein RibD [Prevotella oris F0302] Length = 318 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 144/335 (42%), Gaps = 40/335 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 4 EYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63 Query: 68 R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q + G Sbjct: 64 EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V +ME E ++T R +I LK A + + I + ++ +++ Sbjct: 124 IEVVVDVMEQECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQML 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA+++A+LVG T L D P L R +P RI+L P Sbjct: 183 VHQLRAENEAVLVGHTTFLTDHPRLDVR--QWSGRNPERIVLSPTM-------------- 226 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A R K + + +++ L SL+VEGG +F Sbjct: 227 -------------AARKERPKGWTVAAT----IDEIIAHLYAEKKQSLVVEGGRKTLQAF 269 Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK 336 I L D I + + I+I EG P ++EK Sbjct: 270 IERGLWDEIRVETAPIMITEGVAAPHFPTHAHIEK 304 >gi|260753016|ref|YP_003225909.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552379|gb|ACV75325.1| riboflavin biosynthesis protein RibD [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 323 Score = 249 bits (635), Expect = 7e-64, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 170/364 (46%), Gaps = 50/364 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D R+M AA+ GLT+ +PSV C+IV KD +IGRG T GG PHAE A Sbjct: 1 MTHLENDIRWMQAAIALGERSKGLTAPSPSVGCIIVNKDNQIIGRGWTQSGGRPHAEAMA 60 Query: 60 LEEAGEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 L + + +GAT YVTLEPC+H R P C+ ++ RVV+ DPD R +G+G+ Sbjct: 61 LSQC-QSLKGATVYVTLEPCAHKSNRGPTCSDSLVAAQPERVVIACRDPDHRTNGQGISK 119 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 + GI + ++E + + + +RQ++ R ++TLK+A S D I + S ITG Sbjct: 120 MVAAGIKVECGLLEKQAAQSMSGFFSRQLKARPYVTLKMATSLDGCIALENGESQWITGE 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII 237 ++ HL R +S+ I+VG T+ D P L RL L + SP + +L H ++ Sbjct: 180 RARAHAHLERMRSELIVVGRKTLEFDKPSLNVRLQSLGDRSPKKAVL-GHGEIPSG---W 235 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 II T D +L+EGGA Sbjct: 236 IGLREPTDIIKTTAD------------------------------------HVLIEGGAK 259 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCL 352 A +F+ LVD I+LYR+ I+IG G+ + + G + R G+D Sbjct: 260 TAAAFLKGDLVDRILLYRAPILIG-KGLHALADIGLTHLSEAHHRWHLKERRTLGNDQLE 318 Query: 353 EYIG 356 Y+ Sbjct: 319 AYLR 322 >gi|239978360|ref|ZP_04700884.1| putative riboflavin/cytosine deaminase [Streptomyces albus J1074] gi|291450256|ref|ZP_06589646.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074] gi|291353205|gb|EFE80107.1| riboflavin biosynthesis protein RibD [Streptomyces albus J1074] Length = 378 Score = 248 bits (634), Expect = 9e-64, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 176/369 (47%), Gaps = 21/369 (5%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL + +G TS NP V C+++ G G G G PHAE+ AL EAG+ ARG Sbjct: 14 MRRALELAARGLGTTSPNPVVGCVVLDAHGEQAGEGWHRRAGGPHAEIHALREAGDRARG 73 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA VTLEPC+H GR+ PCAQ +++ GI RVV V DPD G + + Sbjct: 74 GTALVTLEPCNHTGRTGPCAQALLDAGISRVVYAVADPDPLAEGGAATLRAAGAETSQGL 133 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + +E + A+LT R H+T K A + D A S IT ++ VH LRA+ Sbjct: 134 LAAEAEQVNAAWLTSVRRGRPHVTWKYAATLDGRTAAADSTSRWITSAEARADVHRLRAE 193 Query: 190 SDAILVGIGTVLADDPEL-----TCRLNGLQEHSPMRIILDPHFK-LSLDSKIIKTALLA 243 +DA+LVG GT ADDP L + P+RI+LD + ++++ A A Sbjct: 194 ADAVLVGAGTARADDPHLAARLPAPAPDAPAPVQPLRIVLDSDATAVRPGARVLDDA--A 251 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVA 299 P ++ D L ++ ++ + L LL L R V S+L+EGGA +A Sbjct: 252 PTLVAVAGDADARHLEGHP-HVELLRLPRTNGGLDLTALLAALHARSVRSVLLEGGARLA 310 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 +F+ + VD ++ Y + ++G G P L G + +R D G D+ + Sbjct: 311 GAFVAAGAVDRVVGYLAPALLGAG--PQVLTGGGISTIADALRLDITDARRIGPDLRITA 368 Query: 355 IGKNLCLQE 363 + +E Sbjct: 369 VPATSLTKE 377 >gi|258647712|ref|ZP_05735181.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC 51259] gi|260852547|gb|EEX72416.1| riboflavin biosynthesis protein RibD [Prevotella tannerae ATCC 51259] Length = 322 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 150/328 (45%), Gaps = 45/328 (13%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 +M LR + NP V +IV +IG G A G HAEV A+ + R Sbjct: 7 YMHRCLRLAENGRLSAPPNPMVGAVIVYKDRIIGEGYHAKCGQAHAEVNAIASVRPDDRP 66 Query: 69 ---GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +T YV+LEPC+HYGR+PPCA+ I+ GI RVVV +DP +V GRG+ L G+ Sbjct: 67 HLQDSTLYVSLEPCAHYGRTPPCARLILNTGIPRVVVGCEDPFDKVEGRGITMLRDGGVQ 126 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISK 180 + ++E E + + T + R +ITLK A S D + V ++ S Sbjct: 127 VTVGVLEQECRELNRHFFTFHTKHRPYITLKWASSADGFVDSWREDEAAAPVKLSNAHSL 186 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH LRA AILVG GT+ AD P+L R +P R++L Sbjct: 187 MDVHRLRAYHQAILVGHGTLKADRPQLNVR--DWVGSNPQRLVLGH-------------- 230 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V E++ P A+ D+ LL L +G+ SLLVEGG Sbjct: 231 -------VGEDELPAGFTAYA------------DVATLLQSLTEQGIQSLLVEGGPQTQR 271 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP 328 +FI L D I S + +G G+P+P Sbjct: 272 AFIERGLWDEAIEELSPLTLGS-GVPAP 298 >gi|118617420|ref|YP_905752.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium ulcerans Agy99] gi|118569530|gb|ABL04281.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium ulcerans Agy99] Length = 339 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 105/360 (29%), Positives = 168/360 (46%), Gaps = 40/360 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M A+ S G T NP V +IV +G V+G G T G HAEV AL +AG Sbjct: 10 EEAMRLAIEQSMLVKGTTYPNPPVGAVIVDQEGWVVGIGGTQPSGGDHAEVVALRKAGGL 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA A VT+EPC+H+G++PPC +IE + V+ V DP+ ++G G LS G+ V Sbjct: 70 AAGAIAVVTMEPCNHFGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGLQV 128 Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ L +L +Q H+T K A S D A S I+ ++ +H Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARADLH 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA SDAI+VG GTVL DDP LT RL L P+R+++ + ++K++ Sbjct: 189 RRRAISDAIVVGTGTVLVDDPTLTARLSDGSLAAEQPLRVVVGKR-DIPPEAKVLNDDAR 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + ++L L R T +L+EGG +A +F Sbjct: 248 T------------------------MMIKTHEPVEVLRALSDR--TDVLLEGGPTLAGAF 281 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR-----DYFGSDVCLEYIGK 357 + + ++ I+ Y + I++G G + +++ + +R + G D+ L + + Sbjct: 282 LRAGAINRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDGVERCGPDLLLSLVSR 339 >gi|213579885|ref|ZP_03361711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 301 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 98/302 (32%), Positives = 145/302 (48%), Gaps = 18/302 (5%) Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI + + Sbjct: 1 TAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVSHGL 60 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 M SE + +L R ++ LK+ S D MA S IT ++ V LRAQ Sbjct: 61 MMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQ 120 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIK 238 S AIL TVLADDP LT R L P+RI++D +++ +I++ Sbjct: 121 SHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQ 180 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 I T+ D + R ++ + DL L+ L + + S+ VE G + Sbjct: 181 QPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVEAGPGL 238 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 A + + + LVD +I+Y + ++G LE+ F + G DVCL Sbjct: 239 AGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDVCLHM 298 Query: 355 IG 356 + Sbjct: 299 VS 300 >gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1] gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Halorhodospira halophila SL1] Length = 371 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 112/361 (31%), Positives = 176/361 (48%), Gaps = 15/361 (4%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D R+M+ A+R + NP V C++V+DG V+ G PHAE AL+ AG Sbjct: 8 PDDPRWMARAIRRAAAVCPPPHPNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GATAYVTLEPC+HYGR+PPCA+ +I+ G+ RVVV DP+ RV+G G+ L G+ Sbjct: 68 GAAHGATAYVTLEPCAHYGRTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGV 127 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + ++ ++ + +L R R + +K+A S D MA S IT ++ V Sbjct: 128 AVTEGVLAADAEALNRGFLRRMAGGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDV 187 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H RA++ A+L G+GTV ADDP L R E P R++LDP + + + Sbjct: 188 HRGRAEAAAVLTGVGTVRADDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQ-- 245 Query: 241 LLAPVIIVTEND-DPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGG 295 PV+I + A A R ++ ++ L +L L R + + VE G Sbjct: 246 APGPVLIGHAEYVNEARARALRSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAG 305 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKNFMCVRRDYFGSDVC 351 +A S++ D +I+Y + ++G+ P +E + G ++ Sbjct: 306 PTLAGSWVRGGWADELIVYTAPHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIR 365 Query: 352 L 352 + Sbjct: 366 I 366 >gi|41407234|ref|NP_960070.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395585|gb|AAS03453.1| RibG [Mycobacterium avium subsp. paratuberculosis K-10] Length = 341 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 105/371 (28%), Positives = 166/371 (44%), Gaps = 44/371 (11%) Query: 1 MPVSSFDA--RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEV 57 M S D M A+ S G T NP V +++ + T G HAE+ Sbjct: 1 MTASLGDRLDAAMHLAIEQSNQVKGNTYPNPPVGAVVLDGRGEVVGVGGTEPAGGDHAEI 60 Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AG+ A G T VTLEPC+H+G++PPC ++E G+ VV V DP+ + +G + Sbjct: 61 LALRRAGDLAAGGTVVVTLEPCNHHGKTPPCVDALLEAGVGTVVYAVADPNPQAAGGAGR 120 Query: 118 WLSQKGIIVDRMMESEGK-IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 + ++ E L +L +Q H+T K A S D A S I+ Sbjct: 121 LQEAGVTVRSGLLADEVSGGPLREWLHKQRTGLPHLTWKYASSVDGRSAAADGSSRWISS 180 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 S+ +H RA +DAI+VG GTVLADDP LT RL L + P+R+++ LS ++ Sbjct: 181 EASRLDLHRRRAAADAIVVGTGTVLADDPALTARLPDGTLADRQPLRVVVGMREILS-EA 239 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 K++ VI D ++L + R T +L+EG Sbjct: 240 KVLNEESRTMVI------------------------RTHDPAEVLKAVSDR--TDVLLEG 273 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFG 347 G +A +F+ + LV+ I++Y + ++G G+P+ + + D G Sbjct: 274 GPTLAGAFVRAGLVNRILVYLAPTLLGGPVTAVDDVGVPTIAK----ALRWQFDGVDRVG 329 Query: 348 SDVCLEYIGKN 358 D+ L + ++ Sbjct: 330 PDLLLSLVPRS 340 >gi|331697233|ref|YP_004333472.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans CB1190] gi|326951922|gb|AEA25619.1| riboflavin biosynthesis protein RibD [Pseudonocardia dioxanivorans CB1190] Length = 385 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 160/349 (45%), Gaps = 40/349 (11%) Query: 18 SRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTL 76 S G TS NP V C+++ +DG V G G TA G PHAEV AL EAGE ARG TA VTL Sbjct: 32 SARVHGTTSPNPPVGCVVLDRDGRVAGTGATAPPGGPHAEVAALAEAGERARGGTAVVTL 91 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 EPC+H+GR+PPC + GI V V DP+ V+ G L G+ V Sbjct: 92 EPCAHHGRTPPCTDALRAAGIVAVHAGVADPNP-VAAGGAAVLRAAGVDVTVGTLGAEVA 150 Query: 137 --FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 L +L R H+T K A + D A S ITG ++ +VH LRA SDA++ Sbjct: 151 AGPLRGWLHATRTGRPHVTWKFAATLDGRSAAADGSSRWITGPAARARVHALRATSDAVV 210 Query: 195 VGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 VG GT LADDP LT R P+R+++ + Sbjct: 211 VGTGTALADDPALTARDAAGTPVPRQPLRVLV--GLRHP--------------------- 247 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 ++++ D ++L L RGV +L+EGG +A +F+ + VD ++ Sbjct: 248 ----RPGSHLDAPDVLHLRTHDPDEVLAALHARGVVDVLLEGGPRLAGAFLAAGRVDRVL 303 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 + + ++G G P+ L + + + G D+ ++ + Sbjct: 304 AHLAPALLGAG--PAALADAGVGTIADILRLQVASVELVGGDLVVDAVP 350 >gi|326693482|ref|ZP_08230487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Leuconostoc argentinum KCTC 3773] Length = 352 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 159/344 (46%), Gaps = 23/344 (6%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE--AGEEARGATAYVTLEPCSH 81 T NP V +IVKD V+ G G HAE+ A A +A+G T YVTLEPC+ Sbjct: 21 QTFENPRVGAVIVKDNQVLAVGWHERFGGAHAEINAFHHLGAAHDAQGGTLYVTLEPCAV 80 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAY 141 G+ CA+ I + G+ RVV+ DP+ G G+Q L GI V + + + A+ Sbjct: 81 RGKVAACAETIRDWGLARVVIGDLDPNPTTHGLGVQKLRAAGISVVVLDTDDSRQLNPAF 140 Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + + +I LK A S + + IT ++ VH RA+ AI+VG T + Sbjct: 141 YQYHEQHQPYIQLKSAQSHNGYVSAVRGQRSKITDAVADLDVHRQRARHSAIIVGSETWV 200 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 D P LT R L P R+++ +L+ + L ++ TEN A + Sbjct: 201 IDQPRLTVRDVMLTHQQPQRVVIYRRGRLAHEP----ATRLKDWLVYTEN-----AQFAQ 251 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 ++N+ ++ L ++ L +G+ S++VEGG + SF+ ++L ++Y + ++ Sbjct: 252 QENVELMTAG---LPGVMADLGRKGMQSVMVEGGPILITSFLQAQLWHECLIYTADRLLP 308 Query: 322 EG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 +G GI P +++ R+ Y +V CLQ Sbjct: 309 DGVRGIVLPQLPDDIQRIGHTQRQRYVNQEVAT-------CLQA 345 >gi|299143100|ref|ZP_07036209.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298575428|gb|EFI47325.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 318 Score = 246 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 145/335 (43%), Gaps = 40/335 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 4 EYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63 Query: 68 R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q + G Sbjct: 64 EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDAG 123 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I +V +ME+E ++T R +I LK A + + I + ++ +++ Sbjct: 124 IEVVVGVMEAECLALNRRFITFNALHRPYILLKWAQTANGFISKKD-SPLQLSTPVTQML 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 VH LRA+++AILVG T L D P L R +P RI+L P Sbjct: 183 VHQLRAENEAILVGHTTFLTDHPRLDVR--QWSGRNPERIVLSPTM-------------- 226 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 A R + + + +++ L SL+VEGG +F Sbjct: 227 -------------AARKERPEGWTVAAT----IDEVIAHLYAEKKQSLIVEGGRKTLQAF 269 Query: 303 INSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEK 336 I L D I + + I+I EG P ++EK Sbjct: 270 IERGLWDEIRVETAPIMITEGVAAPHFPTHAHIEK 304 >gi|169629892|ref|YP_001703541.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium abscessus ATCC 19977] gi|169241859|emb|CAM62887.1| Probable bifunctional riboflavin biosynthesis protein RibG [Mycobacterium abscessus] Length = 340 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 118/361 (32%), Positives = 169/361 (46%), Gaps = 39/361 (10%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64 D M A+R + G T NP V +I+ G V G G T G HAEV AL AG Sbjct: 7 LDEA-MDLAIRAAEEVKGSTYPNPPVGAVILDAAGQVAGVGGTRPPGQEHAEVVALAGAG 65 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 ARG TA VTLEPC+H GR+ PC + G+ RVV V DP+ + +G G L GI Sbjct: 66 AAARGGTAVVTLEPCNHQGRTGPCVDALAAAGVSRVVYAVADPNPQAAG-GAARLRTLGI 124 Query: 125 IVDRMMESEGK--IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 V + S+ L +L +Q R H+T K S D S IT S+ Sbjct: 125 EVLDGLASDRVSAGPLREWLHKQRTGRPHVTWKYGASVDGRSAANDGTSQWITSEQSRAD 184 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTA 240 VH RA +DA+LVG GTV ADDP+LT R L H P+R+++ ++S D+K++ Sbjct: 185 VHRRRAFADAVLVGTGTVFADDPQLTARTPDNELVPHQPLRVVVGMR-EVSSDAKVLNDD 243 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 VI D ++L L R T +++EGG +A Sbjct: 244 SHTMVI------------------------RTHDPAEVLAALGDR--TDIILEGGPTLAG 277 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEYIG 356 +F+ + LVD I+ Y + +++G G +P+ + G + + + G DV L + Sbjct: 278 AFLRAGLVDRILAYLAPMLLG-GNVPAVEDVGVTTLSRALRWEYDQIERMGPDVLLSLVP 336 Query: 357 K 357 + Sbjct: 337 R 337 >gi|117928481|ref|YP_873032.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidothermus cellulolyticus 11B] gi|117648944|gb|ABK53046.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Acidothermus cellulolyticus 11B] Length = 366 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 113/342 (33%), Positives = 159/342 (46%), Gaps = 36/342 (10%) Query: 19 RWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLE 77 G TS NP V C+++ G V+G G G PHAEV AL AG ARG T VTLE Sbjct: 26 ERGRGSTSPNPIVGCVVLDAAGRVVGEGFHLRAGGPHAEVVALAAAGPAARGGTLVVTLE 85 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PC H GR+ PC I GIRRVV V DP G + ++ ++ +E Sbjct: 86 PCRHVGRTGPCVAEIRRAGIRRVVYAVADPTAAGGGGAELAAAGLDVVG-GVLAAEAAAA 144 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 A+L R R +T K A + D + A S IT ++ VHLLRAQSDAI++G Sbjct: 145 NRAWLHRVATGRPFVTWKYAATLDGRVAAADGSSRWITSDEARRDVHLLRAQSDAIVIGT 204 Query: 198 GTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 GT LADDP LT R++ P+R+++ L +++ AP + Sbjct: 205 GTALADDPALTVRVDDAAPDLTQPLRVVVGRR-DLPPGARLRDD--TAPTV--------- 252 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 D +L L RGV S+L+EGG +A +F+ +RLVD I+ Y Sbjct: 253 -------------QLRKHDPAAVLARLADRGVLSVLLEGGPTLAAAFLRARLVDRIVAYV 299 Query: 316 SQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCL 352 + I++G G P + + + + + G D+ L Sbjct: 300 APILLGSG--PPLVADLGIATLAAGQRWRIDEVTRIGPDLRL 339 >gi|317508958|ref|ZP_07966591.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC BAA-974] gi|316252723|gb|EFV12160.1| riboflavin biosynthesis protein RibD [Segniliparus rugosus ATCC BAA-974] Length = 363 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 107/338 (31%), Positives = 156/338 (46%), Gaps = 34/338 (10%) Query: 27 TNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 P V ++V G ++GRGVT G HAEV A+ EAGE ARGATAYVTLEPC H GR+ Sbjct: 43 PEPPVGAVLVSPGGQIVGRGVTQPPGQAHAEVMAIAEAGERARGATAYVTLEPCDHVGRT 102 Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-GKIFLHAYLTR 144 PC++ +I GI VV V DP+ R SG + + ++ E K L +L Sbjct: 103 GPCSRALIAAGIAEVVYAVPDPNPRSSGGARTLEAAGVRVRSGVLADEVRKGPLREWLHV 162 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 Q R H+T K A + D S ITG + VH R + DAI+VG GT LADD Sbjct: 163 QRTGRPHVTWKFAATLDGRAAAKDGTSQWITGPQIRESVHATRGELDAIIVGTGTALADD 222 Query: 205 PELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 P LT RL L H P R+++ +L ++++ A AP ++ Sbjct: 223 PWLTARLPDGSLAPHQPTRVVMGTR-ELPEAARVLDDA--APTVLA-------------- 265 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 D + L +L + +L+EGG +A +F+ + LVD + + + ++G Sbjct: 266 --------KTHDPAEALAMLGDK--VHVLLEGGPKLAAAFLKAGLVDLVHAHLAPALLGA 315 Query: 323 GGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 G + + F G D+ + + Sbjct: 316 GPLAVGDLGVGTLADALRFSVEDVRQVGGDIAVRLVPD 353 >gi|145295718|ref|YP_001138539.1| hypothetical protein cgR_1645 [Corynebacterium glutamicum R] gi|140845638|dbj|BAF54637.1| hypothetical protein [Corynebacterium glutamicum R] Length = 328 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 112/356 (31%), Positives = 166/356 (46%), Gaps = 41/356 (11%) Query: 12 SAALRFSRWH----VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + AL + G TS NP V +I+ DG V+G G TA G PHAEV AL AG Sbjct: 4 AHALDLAHHASDQVRGTTSPNPPVGAVILDADGEVVGVGATAPPGGPHAEVVALAAAGAR 63 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A G TA VTLEPC+HYGR+ PC++ +++ GI V DP +G G +L++ G+ Sbjct: 64 ANGGTAVVTLEPCNHYGRTGPCSKALLDAGIAHVFYANADPFPSAAGGG-AFLAEAGVDT 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + E L +L R H+TLK A + D G S ITG ++ VH Sbjct: 123 HFL--DERIRVLEPWLQATRLGRPHVTLKFASTVDGFAGATDGTSQWITGPDARAFVHED 180 Query: 187 RAQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R++ DAI+VG GT L D+P LT R +GL E+ P R+++ ++ DS + + Sbjct: 181 RSKRDAIIVGTGTALTDNPSLTARTEDGLYENQPRRVVIGSR-EVPADSNLARLGYE--- 236 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + L++L +G +L+EGG +A + + Sbjct: 237 -------------------------QYAGIPEALSVLWDKGCRDILIEGGPTLAGAALRL 271 Query: 306 RLVDSIILYRSQIVIGEGG--IPSPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKN 358 +VD + Y + ++G G I P E + F GSDV +E + K Sbjct: 272 GIVDQVQAYVAPALLGAGRSVINWPQETTMDQIMRFDTTSVRQLGSDVLIEMMRKE 327 >gi|325268454|ref|ZP_08135084.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM 16608] gi|324988982|gb|EGC20935.1| riboflavin biosynthesis protein RibD [Prevotella multiformis DSM 16608] Length = 380 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 104/387 (26%), Positives = 159/387 (41%), Gaps = 37/387 (9%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G HAEV A Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVKKEEEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165 ++ L + GI + ++E E ++T R ++ LK A ++ Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFVTYNTHHRPYVILKWAQTKRVTTNTLFNTPTNT 180 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218 ++ ++P + + R D +I+ G + D + T L G H Sbjct: 181 LSNTPAIPSPSPLPHREGSEHRDSPDDLSIINGSQDEITDREKKTSAAYIGNLPGRDYHP 240 Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 P +L + D+ ++ L P + V E P + Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPK-REG 299 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 + + L+ L SL+VEGGA SF+ + L D I + + IGEG +E Sbjct: 300 EYATPAEALSHLYAEKKQSLIVEGGAKTLQSFLEAGLWDEIRIETAPFTIGEG-----IE 354 Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L N +++G + + Y + Sbjct: 355 APPLPGNIRITGIEHYG-NAIITYERR 380 >gi|294675036|ref|YP_003575652.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23] gi|294472928|gb|ADE82317.1| riboflavin biosynthesis protein RibD [Prevotella ruminicola 23] Length = 307 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 105/357 (29%), Positives = 149/357 (41%), Gaps = 59/357 (16%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +FM ++ ++ NP V +IV +G +IG G G HAEV A Sbjct: 3 DDKKFMQRCIQLAKNGQLNAKPNPMVGAVIVHNGRIIGEGYHVRCGLAHAEVNAFASVRA 62 Query: 66 EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E +T YV+LEPCSHYG++PPCA IIE G+RRVVV D V GRG+Q L Sbjct: 63 EDEALLPESTIYVSLEPCSHYGKTPPCADLIIEKGVRRVVVGCIDEFAEVQGRGIQKLRD 122 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E K + T EKR +I LK A + + I V I+ +K Sbjct: 123 AGIEVEVGVLEDECKALNRRFFTFHREKRPYIILKWAQTANGFIDDH-HQPVQISSDFTK 181 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LRA+ DAILVG T + P+L R P R+++D L+L+S Sbjct: 182 MLSHKLRAEEDAILVGRVTDEREHPQLNVR--EWYGPDPKRMVIDRAHPLNLES------ 233 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 L + + S++VEGG Sbjct: 234 -----------------------------------------LHAQNIQSIIVEGGTETLQ 252 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 SFI L D + + + + G +P L + +G +V + Y K Sbjct: 253 SFIVQGLWDELRVETNTSLTVSDGTRAP----QLPASAQVASSHIYGKNVIVVYQRK 305 >gi|85372857|ref|YP_456919.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis HTCC2594] gi|84785940|gb|ABC62122.1| riboflavin-specific deaminase/reductase [Erythrobacter litoralis HTCC2594] Length = 325 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 171/344 (49%), Gaps = 48/344 (13%) Query: 21 HVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 +++ NP+V C+IVK VIGRG T GG PHAE ALE+AG++ARGAT YVTLEPC+ Sbjct: 21 GRPVSAPNPAVGCIIVKQDRVIGRGWTRVGGRPHAEAAALEQAGQDARGATIYVTLEPCA 80 Query: 81 HYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLH 139 H R P CA ++ +RVV+ DPD R G G+ L + GI V+ + L Sbjct: 81 HESDRGPSCADLLVAARPQRVVLAEVDPDRRTHGAGIARLRRSGITVETLPSPAAAASLA 140 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +LTR+ R H+TLK+A+S D I +A S ITG ++ H RA SDAILVG GT Sbjct: 141 GFLTRERLGRPHVTLKLALSLDGCIALASGESQWITGEEARAHCHSRRAMSDAILVGGGT 200 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 AD P L RL GL++ SP R++L + +D Sbjct: 201 WRADKPRLDVRLPGLEDRSPQRVVLTRG--VPID-------------------------- 232 Query: 260 FRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + II + D + L VEGGA A SF+ LVD + +YR+ I Sbjct: 233 ----GVRIINEPAQIDRLEAAQYLY--------VEGGAGAAASFLAENLVDRLDIYRAPI 280 Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357 VIG GG P+ G + ++ V R GSD Y + Sbjct: 281 VIG-GGKPAFGNIGLADLTSAHGSWKLVERRQLGSDCYEAYERQ 323 >gi|270157224|ref|ZP_06185881.1| riboflavin biosynthesis protein RibD [Legionella longbeachae D-4968] gi|289164378|ref|YP_003454516.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae NSW150] gi|269989249|gb|EEZ95503.1| riboflavin biosynthesis protein RibD [Legionella longbeachae D-4968] gi|288857551|emb|CBJ11389.1| Riboflavin biosynthesis protein RibD [Legionella longbeachae NSW150] Length = 357 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 147/330 (44%), Gaps = 5/330 (1%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL +R G + NP V + V++G +I + G PHAE L + + Sbjct: 3 KKFLLAALEQARLGQGHCAPNPCVGAVAVQNGTIIAQAHHRGAGTPHAEQLLLTQIPPKT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-LQWLSQKGIIV 126 G Y++LEPC+H+GR+PPC II G+ VV DP+ V+ + L +GI V Sbjct: 63 PGICLYISLEPCNHWGRTPPCVDAIINHGVEEVVFGYLDPNPIVAQNNSSEKLRSRGIKV 122 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +E F +Y + ++ IT+KIA + + IG A V ++ + + H + Sbjct: 123 THYPVAEITEFYKSYTYWTLTQKPRITVKIAQTLNGKIGQAEGERVILSNALCEQFTHQM 182 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA +D +L TV D+P + RLN ++ + II D L+ +++I TA A Sbjct: 183 RAAADVVLTTAKTVQLDNPRMNVRLNNEEQKKTIAII-DRQLVLNQEARIFSTA--AHCH 239 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 I N+ + + DL ++ L G + VE G A+ + Sbjct: 240 IFHCNEQKIF-YPNSTFHPVPEKNGVMDLNVVIKHLGALGYHDVWVEAGGALFSALHREG 298 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 LV LY + I + + G + Sbjct: 299 LVHRTYLYIVPTSLDHSAISAYQQSGVFSR 328 >gi|254497578|ref|ZP_05110366.1| riboflavin biosynthesis protein RibD [Legionella drancourtii LLAP12] gi|254353194|gb|EET11941.1| riboflavin biosynthesis protein RibD [Legionella drancourtii LLAP12] Length = 351 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 90/346 (26%), Positives = 152/346 (43%), Gaps = 7/346 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +F+ AAL +R G + NP V + V++G +I + G PHAE L + + Sbjct: 3 KKFLLAALEQARLGQGFCAPNPCVGAVAVQNGNIIAQTCHHGAGTPHAEQLLLAQIPPKT 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIEC-GIRRVVVCVDDPDVRVSGRG-LQWLSQKGII 125 G + Y++LEPC+H+GR+PPC II GI V+ DP+ V+ + L +GI Sbjct: 63 PGVSLYISLEPCNHWGRTPPCVDVIINHGGIEHVIFAYADPNPIVAQNNSTEKLRAQGIK 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 V +E F +Y + K+ +T+KIA + + IG V ++ + H Sbjct: 123 VTHYPVAEITEFYKSYTYWTITKKPRVTVKIAQTLNGKIGRKVGERVVLSNSLCGEFTHQ 182 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +RA +D IL T+ D+P+L RL ++ P+ II D L+ +++I TA + Sbjct: 183 MRAATDVILTSARTIQLDNPKLNVRLGAKEQAKPVAII-DRQLTLNNEAQIFSTAAHCHI 241 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 E + + + DL ++ L G + VE G A+ + Sbjct: 242 YYCDERKISYSKSSLHRM---PMKNGVMDLSAVIRHLGELGYHDVWVEAGGAIFTALHQE 298 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 LV LY + + I + + G ++ V G ++ Sbjct: 299 GLVHRTYLYLVPTSLEQNAISAYQQSGLFDRP-HTVSWHAMGDNMM 343 >gi|296140262|ref|YP_003647505.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola DSM 20162] gi|296028396|gb|ADG79166.1| riboflavin biosynthesis protein RibD [Tsukamurella paurometabola DSM 20162] Length = 332 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 160/350 (45%), Gaps = 36/350 (10%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A+ S G+++ NP V +I+ DG V GRG TA G PHAEV AL EAG+ ARG T Sbjct: 13 LAIEESVAARGVSTPNPPVGAVILAADGTVAGRGRTAPAGGPHAEVVALAEAGDAARGGT 72 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 A VTLEPC H GR+ PC Q +I GI RV DP+ V+ G L G+ V + Sbjct: 73 AVVTLEPCDHTGRTGPCTQALIAAGIARVAYAAADPNP-VAAGGAATLRSAGLDVTHLGV 131 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 + + R R +T+K+A + D I S ITG ++ +VH RAQ D Sbjct: 132 EPWPLTEWLFRQR--HGRPMVTVKLAATVDGRIAAPDGTSQWITGPAARARVHAERAQLD 189 Query: 192 AILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG GTV DDP LT R L H P RI++ ++S +KI A V+ V Sbjct: 190 AIIVGTGTVAVDDPALTARRPDGSLYRHQPNRIVI-GDREVSSGAKIF--AAPGKVVRVH 246 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 DP ALA + + VEGG+ V +F+ + LVD Sbjct: 247 -GHDPRAALAAAADAV-----------------------HVQVEGGSTVIGAFLAAGLVD 282 Query: 310 SIILYRSQIVIGEGGIPSPL---EEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + Y + +++G G + + G DV L + Sbjct: 283 RVQAYIAPVLLGAGLAALSVPGIGTLGDALRMRLDSVERLGDDVLLTLLR 332 >gi|288929017|ref|ZP_06422863.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317 str. F0108] gi|288330001|gb|EFC68586.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 317 str. F0108] Length = 348 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 157/360 (43%), Gaps = 58/360 (16%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D R+M L+ +R + NP V +IV + +IG G + G HAEV A E Sbjct: 42 DERYMRRCLQLARCGLLGAKPNPMVGAVIVYNDRIIGEGYHIHCGEGHAEVNAFAAIRPE 101 Query: 67 AR----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 +T YV+LEPCSHYG++PPCA II G+ RVVV DP +V GRG++ L Q Sbjct: 102 DEPFLPHSTLYVSLEPCSHYGKTPPCADLIIRKGVPRVVVGCVDPFSKVQGRGIEKLRQA 161 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI +V ++E ++ Q E+R ++ +K A + + I ++ I+ ++ Sbjct: 162 GIEVVVGVLEKACLALNRRFIVFQREQRPYVIMKWAQTANGFIDDHFH-ALAISTPFTQM 220 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 H LRA+ DAILVG T + P L R +P R++L H Sbjct: 221 LSHKLRAECDAILVGKTTDEREHPALNTR--HWWGENPRRLVLHRH-------------- 264 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + +LL L V +L+VEGGA V + Sbjct: 265 -------------------------------QPITQLLAQLYQDNVQTLIVEGGAIVHQA 293 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 FI++ D I + + +G + F ++++ + +V E++ + L Sbjct: 294 FIDANCCDEIHRETAPFTVFDGTRTV-----AIPPKFQLIKQEIYDGNVLEEFVSEYASL 348 >gi|242065054|ref|XP_002453816.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor] gi|241933647|gb|EES06792.1| hypothetical protein SORBIDRAFT_04g018500 [Sorghum bicolor] Length = 522 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 22/313 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--------DGIVIGRGVTAYGGCPHAE 56 + DA + A + GLTS +P+ C+I + D V+G G G P AE Sbjct: 52 ANDALLLRRAADVADRSAGLTSPHPNFGCVIARPQPNTDSTDSWVVGEGFLYAQGTPCAE 111 Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + A +EAGE A G+TAY+ LEP +G + +++ GI RVVV + P + G+ + Sbjct: 112 LLAAQEAGEHACGSTAYLNLEPGDCFGDNTA-VGSLVQAGITRVVVGLRHPLKHLRGKAI 170 Query: 117 QWLSQKGIIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 Q L +GI VD + E L R LK A++ D I Sbjct: 171 QALRSEGIQVDVVGEDLQSKLFEEALKSCLTVNAPLLYRAAFHVPFSVLKYAMTADGKIA 230 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 + + I+G S+ +V LR +SDA++VG TV DDP LT R ++ H P+RI++ Sbjct: 231 ASSGHASWISGKASRGRVFELRGRSDAVIVGGNTVRFDDPRLTAR--HVKGHVPVRIVMS 288 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 L ++ + ++ K + ++ D + + +++ R Sbjct: 289 QSLNLPDEANLWNVNDAYTIVATQRGARRDFQKKLAMKGVEVVEFDMLNPRNVMSYCYDR 348 Query: 286 GVTSLLVEGGAAV 298 G ++L E G + Sbjct: 349 GYLAVLWECGGTL 361 >gi|269795119|ref|YP_003314574.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Sanguibacter keddieii DSM 10542] gi|269097304|gb|ACZ21740.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Sanguibacter keddieii DSM 10542] Length = 393 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 115/391 (29%), Positives = 170/391 (43%), Gaps = 71/391 (18%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG------------------------- 39 + D M+ AL +R NP V C+I+ Sbjct: 22 TLDEA-MAHALDLARRGPAH-GPNPQVGCVILAADTADATRTAGTPGATSAGGAEASRPR 79 Query: 40 IVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 V+ G G PHAE AL A G + RGATA VTLEPC+H GR+ PCAQ +++ G Sbjct: 80 RVLAVGWHRGAGTPHAEADALARASASGVDVRGATAVVTLEPCNHTGRTGPCAQALLDAG 139 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 + VVV V DP+ V+ G+ L G+ + ++ EG+ L +LT R +TLK Sbjct: 140 VAEVVVSVGDPNP-VASGGMGHLRSHGVAVRTGLLADEGEELLRVWLTSVRAGRPFVTLK 198 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 A S D + A S ITG S+ H +RA DAILVG GT+LADDP LT R + Sbjct: 199 TATSLDGCVAAADGSSRWITGPQSRAHAHTVRATVDAILVGTGTLLADDPTLTARPPVPE 258 Query: 216 E-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 H P+R+++ ++ D+++ R + Sbjct: 259 GEVGDGVPEPAVHQPLRVVVGERA-VADDARV------------------------RGGD 293 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 ++ D+ ++L L V +LVEGG VA +F+ + +VD I Y + +++G+G Sbjct: 294 GRFVHLATHDVHEVLARLAALEVRHVLVEGGPTVATAFVTAGVVDEIHSYVAPVLVGDGR 353 Query: 325 IPSPLEEGY---LEKNFMCVRRDYFGSDVCL 352 G + + G DV L Sbjct: 354 RAVGALGGQSIDDAVRWSTSTVERLGEDVLL 384 >gi|224067884|ref|XP_002302581.1| predicted protein [Populus trichocarpa] gi|222844307|gb|EEE81854.1| predicted protein [Populus trichocarpa] Length = 378 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 90/344 (26%), Positives = 161/344 (46%), Gaps = 25/344 (7%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR 68 +M + +R +G TS NP V C+IVKDG ++G G G PHAEV AL +A + A Sbjct: 29 FYMRRCVELARKAIGCTSPNPMVGCVIVKDGKIVGEGFHPKAGQPHAEVFALRDAEDLAE 88 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 ATAYV+LEPC+HYGR+PPC++ +++ +++VV+ + DP+ V+ RG+Q L GI +V Sbjct: 89 NATAYVSLEPCNHYGRTPPCSEALVKAKVKKVVIGMIDPNPIVASRGVQRLRDAGINVVV 148 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQVHLL 186 + E K A++ + + +TL+ ++S + +++ G G G+ S L Sbjct: 149 GVEEELCKRLNEAFIHKMLTGSPFVTLRYSLSVNGHLVNQLGEGVTDTGGYYS-----QL 203 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + DA+++ ++ P + G P+ I++ + ++ + V Sbjct: 204 LQEYDAVILSA-SLTGSSPFPASQEPGAN--QPLWILMAGGPSSPIQIPLLTEEAASKVT 260 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI--- 303 I T+ + KK I + D +L +L RG+ S+L++ + SF+ Sbjct: 261 IFTDKEASEEPETS-KKGIETVVLDKINLNAILEYCKSRGLCSVLMD----LRGSFVELE 315 Query: 304 -------NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ I++ G+ S + + Sbjct: 316 ELLKDGTEQNLLQKIVVEVLPFWDESSGLSSLTASKSIRRRLKV 359 >gi|94498080|ref|ZP_01304643.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58] gi|94422515|gb|EAT07553.1| riboflavin biosynthesis protein RibD [Sphingomonas sp. SKA58] Length = 317 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 176/352 (50%), Gaps = 45/352 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+AA+ SR GL++ NP+V CLIV+DG V+GRG T GG PHAE QAL++A E+AR A Sbjct: 1 MAAAIALSRRGRGLSTPNPNVGCLIVRDGRVVGRGWTQKGGRPHAEAQALDQAMEQARDA 60 Query: 71 TAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 TAYVTLEPC H R P CA + G+ RVV+ + DPD R +G+G WL +G+ + Sbjct: 61 TAYVTLEPCFHLSPRGPRCADLLARAGVARVVIALRDPDPRTNGQGAAWLRDRGVAVEMG 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 ++ E + ++ RQ R H+TLK+ +S D I +A S ITG ++ HL RA Sbjct: 121 LLADEAAAAMAGFVLRQTLGRPHVTLKLGLSLDGRIALANGSSRWITGPQARAHAHLERA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + DAILVG GT+ AD P L RL GL++ +P R +++ Sbjct: 181 RHDAILVGGGTLRADAPRLDVRLPGLEDRAPRR------------------------LLL 216 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 T P I D D LLVEGGA A +F+ + L+ Sbjct: 217 TRGPAPG-NWERIGAPEEIATLDRVD--------------HLLVEGGAGAAAAFLRADLI 261 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 D ++LYR+ I+IG+G G + + G D Y Sbjct: 262 DRLLLYRAPILIGDGLAGIGDIGLGDLAQAHGRWRLTDGRTLGVDKLEVYER 313 >gi|54401353|gb|AAV34447.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase [uncultured proteobacterium RedeBAC7D11] Length = 366 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 91/369 (24%), Positives = 159/369 (43%), Gaps = 23/369 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ F+S A+ V C+IVKD +IGRG G HAE+ A+ + ++ Sbjct: 3 DSFFISKAISLGLKGRFTAKPGVKVGCVIVKDNKIIGRGFYQKYGGSHAEINAINDVKKK 62 Query: 67 AR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + G+ +VTLEPCS G++ C + + +R++V DP + G+ Sbjct: 63 YKTNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIIVGAKDP----TQSGINS 118 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L + G V + + +I ++ + K+ + K+A+S D+ A ITG Sbjct: 119 LQRAGYEVKNLNNQQCQILNESFFHKVKSKKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDS 234 ++N V +LRA++D IL G GT+ D+P + R + P R + KL+ + Sbjct: 179 ARNDVQILRAEADIILTGAGTINEDNPSMNVRSKKIIANENFIQPERYVFSNSLKLNWSA 238 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLV 292 K V++ ++ P L+ + ++ + + L K + + V ++L+ Sbjct: 239 PFFKLPGK-KVVVTSKKSLPKLSQGIKDISLMNLGKNNDSLNSKDFIKRISKLNVNNILI 297 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGS 348 E G + SF + LVD I Y S +G+ + L +K F V G Sbjct: 298 EAGPRLLGSFSDHDLVDEYIFYISPEKLGDKALHFYGGNKQLNFFDKKLFDIVDETNIGK 357 Query: 349 DVCLEYIGK 357 D + K Sbjct: 358 DKKITLRKK 366 >gi|260910408|ref|ZP_05917080.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472 str. F0295] gi|260635484|gb|EEX53502.1| riboflavin biosynthesis protein RibD [Prevotella sp. oral taxon 472 str. F0295] Length = 351 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 153/357 (42%), Gaps = 58/357 (16%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 + D R+M L+ +R + NP V +IV +IG G + G HAEV A Sbjct: 48 TTDERYMRRCLQLARCGLLGAKPNPMVGAVIVYRDRIIGEGYHVHCGEGHAEVNAFAAVR 107 Query: 65 EEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E +T YV+LEPCSHYG++PPCA II + RVVV DP +V GRG++ L Sbjct: 108 PEDESLLPQSTLYVSLEPCSHYGKTPPCADLIIRKEVARVVVGCIDPFAKVQGRGIEKLR 167 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + GI +V ++E E ++ Q E+R ++ +K A + + I ++ I+ + Sbjct: 168 RAGIEVVVGVLEKECLALNRHFIVFQREQRPYVIMKWAQTANGFIDDHY-RALAISTPFT 226 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LRA+ DAILVG T + P L R SP R++L + Sbjct: 227 QMLSHKLRAECDAILVGKTTDEREHPALNTR--HWWGKSPRRLVLHRQQAI--------- 275 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 +LL L V +L+VEGG+ V Sbjct: 276 ------------------------------------AQLLAQLYQDNVQTLIVEGGSTVH 299 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 +FIN+ D I + + +G + F ++++ F +V E++ Sbjct: 300 QAFINANCCDEIHRETAPFTVFDGTKAI-----DIPPKFRLIKQEIFDGNVMEEFVR 351 >gi|256824048|ref|YP_003148008.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM 20547] gi|256687441|gb|ACV05243.1| riboflavin biosynthesis protein RibD [Kytococcus sedentarius DSM 20547] Length = 461 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 105/442 (23%), Positives = 166/442 (37%), Gaps = 125/442 (28%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG----- 64 M AL + NP V C+++ +DG +G G G PHAEV AL +AG Sbjct: 22 MRRALDLAARG-PAVDPNPRVGCVLLDRDGRTLGEGFHQGAGTPHAEVAALLDAGCGPAA 80 Query: 65 -----------------------------------------------EEARGATAYVTLE 77 GATA VTLE Sbjct: 81 GPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTHAGPRPSGPVTRAGTPRLPAGATAVVTLE 140 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PC+H GR+ PCA+ +++ I RVV+ DP ++ G + L G+ +V ++ESE Sbjct: 141 PCNHTGRTGPCAEALLDAEIARVVIAQSDPTP-LASGGAERLRTAGVEVVTGVLESEATA 199 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + R +TLK+A + D + A S ITG ++ VH RA + AI+VG Sbjct: 200 LNRWFTASARLGRPVVTLKLASTLDGRVAAADGTSQWITGGPARLDVHRQRATAGAIVVG 259 Query: 197 IGTVLADDPELTCR-------------------------------------LNGLQEHSP 219 GT LADDP+LT R P Sbjct: 260 TGTALADDPKLTVRLPAAELAAPAVESDPAPEAGPAPSATPSTDAAPAPDATTAPTPRQP 319 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 +R+++ +L +++ A I D ++L Sbjct: 320 LRVVVGTR-ELPASARVFDDAAET------------------------ISLRTHDPAEVL 354 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK--- 336 +L RG+ + +EGG +A +F+ + LVD ++ Y + ++G G PS + + + Sbjct: 355 RVLSDRGIHHVWLEGGPTLAAAFLRAGLVDRLVHYLAPALLGAG--PSLIGDLGIGSIDG 412 Query: 337 --NFMCVRRDYFGSDVCLEYIG 356 + + G D+ L + Sbjct: 413 IDRWHLEDVTHLGDDLRLTLVP 434 >gi|288803443|ref|ZP_06408875.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica D18] gi|288334053|gb|EFC72496.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica D18] Length = 365 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 103/400 (25%), Positives = 155/400 (38%), Gaps = 99/400 (24%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A Sbjct: 1 MKQEETDEKYMRRCLQLARNGQLLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60 Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG Sbjct: 61 FASVSKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHIT--------------------- 153 ++ + + GI + ++E E ++T KR ++ Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAEASSPSPLPLPQREGSN 180 Query: 154 -------------------------LKIAVSQDNMIGMAGCGSVP--ITGFISKNQVHLL 186 S + + G P I+ +K VH + Sbjct: 181 HRDSPNNSEKVIANITIENRNNRIYCNYKPSVAYIGNLPGKDYQPLIISTPFTKMLVHKM 240 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++DAILVG T + P+LT R +P +++L Sbjct: 241 RAENDAILVGKTTEELEQPQLTVR--EWSGPNPEKLVLTSQ------------------- 279 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 P A + ++L+ L SL+VEGGA SF+++ Sbjct: 280 -------PTKAGEYA------------TPAEVLSHLYAEKQQSLIVEGGAKTLQSFLDAG 320 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 L D I + + + GI +P L N ++ + + Sbjct: 321 LWDEIRIESAPFTV-NKGIEAP----KLPDNLRVIKVEKY 355 >gi|220912436|ref|YP_002487745.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus A6] gi|219859314|gb|ACL39656.1| riboflavin biosynthesis protein RibD [Arthrobacter chlorophenolicus A6] Length = 373 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 106/368 (28%), Positives = 159/368 (43%), Gaps = 38/368 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 P + + + M AL + G NP V ++V DG + G G HAE A+ Sbjct: 10 PFTPAEVQAMEHALEAAL--QGPRGANPLVGAVVVSPDGRELATGYHRGAGTAHAEADAV 67 Query: 61 ---EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 EAG + G T VTLEPC+H GR+ PC + II GI VV VDDP +G G Sbjct: 68 ARAREAGVDLAGCTMVVTLEPCNHVGRTGPCTEAIIAAGITDVVYAVDDPHDPAAG-GAA 126 Query: 118 WLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 L GI + + +E + EKR TL IA + D I S I+ Sbjct: 127 TLRNAGISVRSGLAAAESLELNRRWFEAVAEKRPFTTLHIAQTLDGRIAAEDGTSQWISS 186 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDS 234 S H +R++ DAILVG TV D+P L R P+R ++ + + Sbjct: 187 PESLADNHGIRSRIDAILVGTQTVAVDNPRLNARDASGNPAARQPVRAVMGLR-DIPEHA 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 I+ LA ++ RD ++ LT L G ++VEG Sbjct: 246 AILGDDGLA------------------------VHLPTRDPREALTTLYASGTRHVMVEG 281 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVC-LE 353 G+ + +F+ + LVD +I+Y + ++G G PS L+ + ++ SD + Sbjct: 282 GSRILSAFLTAGLVDELIVYLAPTLLGS-GTPS-LDGLGVSTLPDAQHWEWDASDGGPVR 339 Query: 354 YIGKNLCL 361 +G++L L Sbjct: 340 TLGRDLRL 347 >gi|312113516|ref|YP_004011112.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC 17100] gi|311218645|gb|ADP70013.1| riboflavin biosynthesis protein RibD [Rhodomicrobium vannielii ATCC 17100] Length = 398 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 123/360 (34%), Positives = 182/360 (50%), Gaps = 17/360 (4%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD--GIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 AL ++ ++G TS NPSV ++ G +I TA GG PHAEV AL EAG+ A+G Sbjct: 35 RRALFVAQTNIGATSPNPSVGAVVADARTGEIIASAATARGGRPHAEVLALREAGDRAKG 94 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A TLEPCSH+G +PPCA I+ GI ++ DPD RV GRGL +++Q G+ R Sbjct: 95 ALIITTLEPCSHFGATPPCAHSIVNAGISHLIYGSLDPDTRVGGRGLTYVAQHGVRATRG 154 Query: 130 MES---EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + + R E+R + +K+AV + + V ITG +++ HLL Sbjct: 155 TPAFVRDCDWLHLGHSLRVTERRPFVQVKLAVDAAGFVPLGNGKPVFITGDVARAAAHLL 214 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 RA++DAILVG TV ADDPELTCRL GL + SP+R++L + +K+ PV Sbjct: 215 RARADAILVGRKTVEADDPELTCRLPGLADRSPVRVVLASRCNVPPAAKLFANER-PPVW 273 Query: 247 IVTENDDPVLALAFRKKNINII-----YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 IV D A F + + ++ +L+ + + G+T LLVEGG + A Sbjct: 274 IVC-GDSTEGAAFFGRPGVRVLDIGASLTGRLNLRLAMMRVAAEGITRLLVEGGPSTARG 332 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356 FI++ L D +I+ + + P + L+ F + G+D Y Sbjct: 333 FIDAGLADEVIIMQGTQTLDPQAGMPPFGDRGLDLVAASPQFTLFDKRKAGADTISIYRS 392 >gi|319442108|ref|ZP_07991264.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil [Corynebacterium variabile DSM 44702] Length = 353 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 118/346 (34%), Positives = 166/346 (47%), Gaps = 47/346 (13%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCS 80 G TS NP V +I+ DG V+G G T+ G PHAEV AL EAGE+ARG TA VTLEPC+ Sbjct: 31 RGTTSPNPPVGAVILSVDGDVVGTGGTSPVGGPHAEVNALAEAGEKARGGTAVVTLEPCN 90 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-------IIVDRMMESE 133 H GR+ PCA ++E GI RVV DP G G ++L G + D ++ Sbjct: 91 HTGRTGPCALALLEAGIARVVYAFADPGDAEGG-GAEFLRSHGVPVTGPLVTGDTGLDGV 149 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + + +L + R H+TLK A + D S ITG ++ VHL R++ DAI Sbjct: 150 PQFSVEPWLASRRLGRPHVTLKYAGTLDGFAAATDGTSQWITGESARALVHLDRSRRDAI 209 Query: 194 LVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 +VG GT+LADDP LT R GL +H P R+++ + +D+ + Sbjct: 210 IVGTGTILADDPRLTARRPEGGLYDHQPERVVVGRT-DVPVDAAVF-------------- 254 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 A R + L ++L L RG+ +L+EGG +A SFI LVD++ Sbjct: 255 ------PALRYRGGA--------LAEVLADLGARGIVDVLIEGGPHIAASFIADGLVDAV 300 Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE------KNFMCVRRDYFGSDVC 351 Y + ++G GIP+ F D D+ Sbjct: 301 DAYTAPALLGA-GIPTVAPAASTATTIGGISRFTLRSVDVVDGDIV 345 >gi|115450331|ref|NP_001048766.1| Os03g0117200 [Oryza sativa Japonica Group] gi|108705865|gb|ABF93660.1| riboflavin biosynthesis protein RibD containing protein, expressed [Oryza sativa Japonica Group] gi|113547237|dbj|BAF10680.1| Os03g0117200 [Oryza sativa Japonica Group] gi|215687333|dbj|BAG91867.1| unnamed protein product [Oryza sativa Japonica Group] Length = 423 Score = 242 bits (617), Expect = 9e-62, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 75 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 134 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 135 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 194 Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 195 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 253 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + R G P+ II+ L+ +K Sbjct: 254 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQCENSQLNIPFLKEE 306 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295 A ++++ D P+ ++++ D +L +L +L RG+ S+LV E G Sbjct: 307 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 361 Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A++ ++F + +LV +++ + G G V V L+ Sbjct: 362 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 420 >gi|159478382|ref|XP_001697283.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydomonas reinhardtii] gi|158274757|gb|EDP00538.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Chlamydomonas reinhardtii] Length = 684 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 94/368 (25%), Positives = 149/368 (40%), Gaps = 21/368 (5%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGI-VIGRGVTAYGGCPHAEVQAL 60 ++ D + AA R + G T +P+ AC +V DG VI + G AEV A+ Sbjct: 42 LTDPDYAHLEAAARLAGSPEGETQPHPNAACRLVGPDGRTVISQAFLRAQGTTSAEVLAV 101 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AG ARG TAY+ LEP +G + ++ G+ RVVV + P + RG+ L Sbjct: 102 SAAGPAARGGTAYLNLEPGDCHG-EGAAVEALVRSGVSRVVVGLRHPLRHLRSRGIGLLR 160 Query: 121 QKGIIVDRMMESE-----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 G+ V M R +R LK A++ D I Sbjct: 161 NAGLRVGEMGGVLAGGLAGDPRPTPFPICFPRTCRAALRRPLGVLKYAMTLDGKIATNLG 220 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ++ S+ V RA+SDA++VG TV D+P LT R G H+P RI++ Sbjct: 221 HSAWVSSAQSRALVFETRARSDAVIVGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLD 278 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 L D+ + L +++ A R + + ++ D + + RG Sbjct: 279 LPEDANLWDVTLAPTIVLTQRGARTRFQSALRAQGVEVVEFDFLTPESVADYCQERGFLQ 338 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-----RRD 344 E G +A I S +V ++ + + +IG P+P+ E + V Sbjct: 339 CFWECGGTLAAPAIASGVVHKVMAFVAPKIIGGLRAPTPVGELGFVEMTQAVELVDTEWS 398 Query: 345 YFGSDVCL 352 G D+ + Sbjct: 399 QVGPDLMI 406 >gi|256831920|ref|YP_003160647.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM 20603] gi|256685451|gb|ACV08344.1| riboflavin biosynthesis protein RibD [Jonesia denitrificans DSM 20603] Length = 354 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 152/357 (42%), Gaps = 39/357 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQALEEA---GEE 66 M+ AL + G+ NP V +IV + + G G HAEV AL A G Sbjct: 1 MNVALEQA--ARGVRGANPLVGAVIVDEHSGDVAVGHHRGRGTAHAEVDALRCARDRGLR 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AT YVTLEPC+HYG +PPC I++ GI RVV+ +DP V+ G L G++V Sbjct: 59 LDAATMYVTLEPCNHYGVTPPCTDAILDAGIPRVVIAGEDPH-DVAAGGAHTLRAAGVVV 117 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 D + +LT Q E+R I KIA S D S ITG ++ H Sbjct: 118 DIVPLDAAVSLNERWLTAQRERRPFIRAKIAQSLDGFSAALDGTSQWITGPQAREYAHKQ 177 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R DAI+VG GTVLAD P LT R P+R+ + H D+ I Sbjct: 178 RHLVDAIVVGTGTVLADQPTLTARY-DPGGAQPLRVHM-GHTTTPPDAPI---------- 225 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 R + ++ D L RG +L+EGG + +F+ + Sbjct: 226 --------------RGADGRFVHLPTHDPNLAAHQLYERGARDILIEGGPRLIGAFLEAG 271 Query: 307 LVDSIILYRSQIVIGEGGIPSPL---EEGYLEKNFMC---VRRDYFGSDVCLEYIGK 357 LVD + +Y + +++G G + L F+ + G D+ YI + Sbjct: 272 LVDLLEVYTAPMLLGGGTTSTALSSVASLGDALRFLPDPIAQPMRLGVDLLTHYIPR 328 >gi|222624084|gb|EEE58216.1| hypothetical protein OsJ_09181 [Oryza sativa Japonica Group] Length = 396 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167 Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 226 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + R G P+ II+ L+ +K Sbjct: 227 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQCENSQLNIPFLKEE 279 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295 A ++++ D P+ ++++ D +L +L +L RG+ S+LV E G Sbjct: 280 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334 Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A++ ++F + +LV +++ + G G V V L+ Sbjct: 335 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGSVLLQ 393 >gi|308806057|ref|XP_003080340.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus tauri] gi|116058800|emb|CAL54507.1| putative riboflavin biosynthesis protein ribD (ISS) [Ostreococcus tauri] Length = 655 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 88/365 (24%), Positives = 145/365 (39%), Gaps = 25/365 (6%) Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIV--IGRGVTAYGGCPHAE---VQALEEAGEEARGA 70 + G ++ +P AC I + RG G AE V+AL G RG Sbjct: 69 ALAMSSEGASAPHPLSACAITDANGTTRVARG-HEGQGATRAEIACVEALVRDGVGVRGG 127 Query: 71 TAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA V LEP + ++ G+RRVVV + P + GR ++ + ++GI+VD + Sbjct: 128 TACVNLEPVHGEVAGETRAVEALVTAGVRRVVVGMLHPLPGLRGRAVKAMRERGIVVDVL 187 Query: 130 MESE----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + A L R + K A++ D I S +TG + Sbjct: 188 DARASGLEGEVAARCRETNEALLYRVATGLPYSVYKYAMTLDGKIATDNGHSSWVTGAEA 247 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + +V R ++D I+VG TV D+P LTCR P RI+L L D+++ + Sbjct: 248 RERVFRERKRADCIVVGGATVRKDNPRLTCREE--TGFQPARIVLSRTLNLPEDAELWRV 305 Query: 240 ALLAPVIIVTEN-DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 +AP I+ T P R K + ++ + + + RG E G + Sbjct: 306 RDVAPTIVCTTKGARPEFQKMLRSKGVEVVEFNELTPLEAAKYMHARGFLRCFWECGGGL 365 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 A + S + ++ + + +IG P+PL + E V + G D+ + Sbjct: 366 AAPAMKSGVFHHVMAFVAPKLIGGNSAPTPLGDLGFEAMHDALPLAGVTLETVGRDILVR 425 Query: 354 YIGKN 358 N Sbjct: 426 GYVPN 430 >gi|330752436|emb|CBL87386.1| riboflavin biosynthesis protein [uncultured Flavobacteria bacterium] Length = 310 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 150/305 (49%), Gaps = 26/305 (8%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG--EEARGATAYVTLEPCSHYGRSPP 87 V CLIVKD +IG G T G HAEV A++ E + AT YVTLEPCSH+G++PP Sbjct: 1 MVGCLIVKDDEIIGEGYTDPYGGSHAEVNAIKSVKNQELLKSATLYVTLEPCSHHGKTPP 60 Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQV 146 C I+ I RVV+ DP +V G+G+ L G ++ + E+ K+ +LT Sbjct: 61 CCDLILSRQIPRVVIGCIDPHEKVCGQGIARLKASGCQVIVGVEEALCKLHHKRFLTYHT 120 Query: 147 EKRSHITLKIAVSQDNMIGMAGC---GSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 +KR +I LK A S++ + + I+G +S+ VH RA+ AILVG TV+ D Sbjct: 121 KKRPYIILKWAQSKNGFVAPKNKNSNRAFWISGKLSRQLVHQWRAEEQAILVGANTVIKD 180 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 +P LT R + +P+RI++ + KLS I A I++ + Sbjct: 181 NPSLTTR--HVVGKNPIRIVVSNNKKLSRQLNIFNGD--AQTILLNTDK----------- 225 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D ++ L + +TSL+VEGG F++ L D ++ I + Sbjct: 226 ----FKIDEPIGTQICDKLFSKKITSLIVEGGPKTLDYFLSENLWDEARIFEGNTDI-KE 280 Query: 324 GIPSP 328 G+ +P Sbjct: 281 GVKAP 285 >gi|6226765|sp|O24750|RIBD_CORAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes: RecName: Full=Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase; Includes: RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|21914864|dbj|BAA20053.1| ribG [Corynebacterium ammoniagenes] Length = 337 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 105/320 (32%), Positives = 148/320 (46%), Gaps = 30/320 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + + A+ G TS NP V +I+ G ++G G T G HAEVQAL +A + Sbjct: 16 EQALRTAMSAGWEVRGTTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGK 75 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GATA VTLEPC H GR+ PC Q +IE GI+ V+ DP+ G Q L GI V Sbjct: 76 TEGATAVVTLEPCRHTGRTGPCTQALIEAGIKDVLFLHSDPNPSAGGGE-QVLVDAGINV 134 Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ E L +L +R H+TLK A + D A S ITG ++++ VH Sbjct: 135 VQLPSPEGVPDALIPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHA 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGL--QEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R DAI++G GT L D+P LT R +EH P R+++ Sbjct: 195 DREHRDAIIIGTGTALIDNPSLTARYPDGTQREHQPRRVVIGRRNI-------------- 240 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D A + + + L L G +LVEGGA +A F Sbjct: 241 -------ADAGDAASNLNRLGFEQYAT----IDEALAELYATGARDVLVEGGAGLASGFA 289 Query: 304 NSRLVDSIILYRSQIVIGEG 323 N LVD + +Y++ +++GEG Sbjct: 290 NQGLVDWLQVYQAPLLLGEG 309 >gi|218191968|gb|EEC74395.1| hypothetical protein OsI_09744 [Oryza sativa Indica Group] Length = 396 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 100/359 (27%), Positives = 169/359 (47%), Gaps = 22/359 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 S D +M + +R G TS NP V C++V+DG V+G G G PHAEV AL +A Sbjct: 48 SDMDGHYMRRCVELARKAAGHTSPNPMVGCVVVRDGRVVGEGFHPKAGQPHAEVFALRDA 107 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G+ A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L G Sbjct: 108 GDLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVGMTDPNPIVASKGIERLRSAG 167 Query: 124 IIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISK 180 I V ++ E + AY+ R + ++ TL+ +S + +I G G+ G+ S Sbjct: 168 IDVRLCVDEEASCRKLNEAYIHRMLTGKAFATLRTTLSMNGVVINQIGSGADQPEGYYS- 226 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ + R G P+ II+ L+ +K Sbjct: 227 ----QLLKEYDGVIISSNFAKT-NTLPVSREAGA--KQPLYIIIAQGENSQLNIPFLKEE 279 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295 A ++++ D P+ ++++ D +L +L +L RG+ S+LV E G Sbjct: 280 RAAEAVVLS--DSPITV---EPAGVDVLVLDQMNLDAILQLLAQRGLCSVLVDFREAGGG 334 Query: 296 -AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 A++ ++F + +LV +++ + G G V V L+ Sbjct: 335 IASLLNNFQDDKLVQKVVVELLPVWAVSKGPSDLAFGGSQSFPLKDVEHSEVNGCVLLQ 393 >gi|227549213|ref|ZP_03979262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium lipophiloflavum DSM 44291] gi|227078667|gb|EEI16630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium lipophiloflavum DSM 44291] Length = 324 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 152/360 (42%), Gaps = 42/360 (11%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 +S D AAL G TS NP V C + +G +I G T+ G HAE+ AL Sbjct: 1 MSEIDYH---AALSAGDAVRGATSPNPPVGCALFSPEGELIATGGTSPAGGAHAEINALR 57 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG ARGATA VTLEPC+H GR+ PCA+ + + I R+V DP+ + +G G +L++ Sbjct: 58 AAGSRARGATAVVTLEPCNHTGRTGPCAKALADAQIARLVYLTTDPNPQAAG-GADYLAR 116 Query: 122 KGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 G+ V + E L +LT R +TLK A S D S ITG ++ Sbjct: 117 HGVEV--VFEPRRVDALVPWLTSIERGRPSVTLKYAASLDGFTAAPDGTSKWITGPAARR 174 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 VH RA DAI++G GT +AD+P LT R + P R+++ Sbjct: 175 HVHADRAVRDAIIIGTGTAIADNPSLTARYDDGSLMATQPRRVVVGTR------------ 222 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V + L L G +LVEGGA +A Sbjct: 223 --------------AVPEGNLTRLGFEQYAT----PDDALEALWESGARDVLVEGGAGLA 264 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 SF+ LVD + Y + +++G G P + G DV +E Sbjct: 265 ASFLEQGLVDRVQAYAAPLLLGAGTHVVPAALAATLAEAPRYRLTHVTVLGDDVLIEMER 324 >gi|68536087|ref|YP_250792.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium jeikeium K411] gi|68263686|emb|CAI37174.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium jeikeium K411] Length = 354 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 113/360 (31%), Positives = 163/360 (45%), Gaps = 50/360 (13%) Query: 17 FSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75 L S NP V +I G V+GRG T G HAEV ALE+AGE+ARG A VT Sbjct: 12 LGWQAAQLASPNPPVGAVIEDPSGQVVGRGFTQAPGGAHAEVVALEQAGEKARGGRAIVT 71 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE-- 133 LEPC+H GR+ PCA+ +I GIRRV DP+ ++ G L G+ V Sbjct: 72 LEPCNHTGRTGPCAEALIRAGIRRVDFLFADPNP-IAEGGAATLRAAGVEVHGPYLPNPT 130 Query: 134 -----------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 + +L + ++R H+ LK+A + D + S ITG ++ Sbjct: 131 TSPAAKLPAWSQMYSVEPWLISEAQQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVA 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIK 238 VH R + DAILVG GT++AD+P LT R + E P+R+I+ + + + Sbjct: 191 VHEDRTRRDAILVGTGTIVADNPRLTARDADGRPFPEELQPLRVIMGTS-DIPAGAAVFA 249 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 T A ++ RD+ ++L L R V +LLVEGGA V Sbjct: 250 TPGRA------------------------LHLQTRDVHEVLAELWKRDVRTLLVEGGAQV 285 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCL 352 A +F+ + +VD + Y + V+G G E L + F+ FG D+ Sbjct: 286 AAAFVKADVVDEVQYYAAPAVLGAGVASLSDSENNLGQTIGDIRRFVPRELQVFGQDLRW 345 >gi|116610344|gb|ABK03068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp. FB24] Length = 386 Score = 239 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 96/322 (29%), Positives = 149/322 (46%), Gaps = 35/322 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66 M AAL + +G NP V +++ DG + G G HAE A+ +AG + Sbjct: 1 MDAALDAAL--LGPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLD 58 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 G+T VTLEPC+H GR+ PCAQ II+ GI VV VDDP +G G L G+ + Sbjct: 59 LTGSTMVVTLEPCNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSV 117 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 + + + +R +TL IA + D+ I A S I+ S H Sbjct: 118 RSGLSARAAFELNRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHG 177 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR++ DAILVG T+L D+P LT R + + P+R ++ + D+ I Sbjct: 178 LRSRVDAILVGTQTLLVDNPRLTARDASGKPAGNQPLRAVMGLRG-IPDDAAI------- 229 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + +++ RD + L L GV ++VEGG+++ +F+ Sbjct: 230 -----------------HGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFL 272 Query: 304 NSRLVDSIILYRSQIVIGEGGI 325 + LVD +I+Y + ++G G Sbjct: 273 AAGLVDELIVYLAPTLLGSGTA 294 >gi|254456442|ref|ZP_05069871.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp. HTCC7211] gi|207083444|gb|EDZ60870.1| riboflavin biosynthesis protein RibD [Candidatus Pelagibacter sp. HTCC7211] Length = 353 Score = 239 bits (609), Expect = 7e-61, Method: Composition-based stats. Identities = 108/314 (34%), Positives = 170/314 (54%), Gaps = 8/314 (2%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R + GLT TNPSV C+IVK +I G T+Y G PHAEV A++ + E A Sbjct: 1 MDLALDLARSNEGLTGTNPSVGCIIVKHDKIISIGQTSYNGRPHAEVNAIKNSIENLNDA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 T YVTLEPCSH+G +PPC II+ ++ V+ + D D RV G+ + L K I + + Sbjct: 61 TMYVTLEPCSHHGVTPPCTSSIIKSKLKEVIYSIIDIDQRVKGKTYKILKSKKIKVRTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + K F Y + +K +++ KIA+S++N+I + IT S H LR + Sbjct: 121 LKKKVKQFYTPYFFNRQKKLPYVSGKIAISKNNLI--FSKKNRKITNIKSDKFTHFLRYK 178 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 +D+IL+ T+ D+P+L CRL GL++ SP RIILD K + +S + KTA I Sbjct: 179 NDSILISYRTLNKDNPKLNCRLKGLEKFSPKRIILDNKLKTNTNSYLFKTANKENTIFFY 238 Query: 250 ENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 L F+K I ++ + + + L G ++LVEGG + +F++ Sbjct: 239 NEAIKSKILEFKKNKITVLKLNIDNNKRFNPSIIFKKLYTLGCRNVLVEGGDELTKNFVS 298 Query: 305 SRLVDSIILYRSQI 318 +++ + L++ Sbjct: 299 NKIFNQFFLFKGSK 312 >gi|260578782|ref|ZP_05846689.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC 43734] gi|258603080|gb|EEW16350.1| riboflavin biosynthesis protein RibD [Corynebacterium jeikeium ATCC 43734] Length = 354 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 112/362 (30%), Positives = 162/362 (44%), Gaps = 50/362 (13%) Query: 17 FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75 L S NP V +I G V+GRG T G HAEV AL++AGE+ARG A VT Sbjct: 12 LGWRAAQLASPNPPVGAVIEDSSGQVVGRGFTQAPGGAHAEVVALQQAGEQARGGRAIVT 71 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR------- 128 LEPC+H GR+ PCA+ +I GIRRV D + + G L G+ V Sbjct: 72 LEPCNHTGRTGPCAEALIRAGIRRVDFLFADLNP-AAEGGAATLRAAGVEVHGPYLPLPT 130 Query: 129 -MMESEGKIFLHAYLTRQV-----EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 E++ + Y +R H+ LK+A + D + S ITG ++ Sbjct: 131 AGDEAKLPAWSKMYSVEPWLISMARQRPHVCLKMASTLDGRVAAVDGTSQWITGEPARVA 190 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIK 238 VH R + DAILVG GT+ AD+P LT R Q E P+R+I+ + +D+ + Sbjct: 191 VHEDRTRRDAILVGTGTIAADNPRLTARDAEGQPFAEELQPLRVIMGTS-DIPVDAAVFA 249 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 A ++ RD+ ++L L R V +LLVEGGA + Sbjct: 250 APGHA------------------------LHLPTRDVNEVLAELWKRDVRTLLVEGGAQI 285 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCL 352 A +F+ + +VD + Y + V+G G E L + F+ FG+D+ Sbjct: 286 AAAFMEADVVDEVQFYAAPAVLGAGVASLSDSENILGQTIGDIRRFIPRELQVFGNDLRW 345 Query: 353 EY 354 Sbjct: 346 TM 347 >gi|307106809|gb|EFN55054.1| hypothetical protein CHLNCDRAFT_24125 [Chlorella variabilis] Length = 697 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 92/372 (24%), Positives = 148/372 (39%), Gaps = 26/372 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGV-TAYGGCPHAEVQALE 61 ++ D R + A S+ +G T +P C++V +G+ + A G E A Sbjct: 12 AAKDLRHLLRAAEVSQEPMGQTQPHPYAGCVLVSSEGVPLAEASQWAQQGTEAPECAAAR 71 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG A G TAY+ LE +G + G+ RVVV + P + G L L Sbjct: 72 QAGGAAAGGTAYLNLECGDCHGDR-AAVDALAGAGVARVVVGMRHPLPHLRGTALAQLRA 130 Query: 122 KGIIVDRMMES----------------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIG 165 G+ V + E+ A L R V KR LK A++ D I Sbjct: 131 AGLRVAVLGEAPCGAGVAGEEAEAALDACLAANEALLHRAVIKRPMGLLKYAMTLDGKIA 190 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 S ++ S+ +V RA+SDA++VG TV D+P+LT R G H PMRI++ Sbjct: 191 THTGHSAWVSSAQSRQRVFETRARSDAVIVGGCTVRRDNPQLTTRREG--GHQPMRIVMS 248 Query: 226 PHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR 285 L ++K+ + V+ A R++ + ++ D + R Sbjct: 249 RTLDLPAEAKLWDVSHAPTVVATQRGARRDFQDALRRRGVEVLEFDFLTPDAVARYCYDR 308 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL-----EKNFMC 340 G L E G +A I + + + + + +IG P+P+ + Sbjct: 309 GFLQCLWECGGMLAAPAIATGAIHKAMAFVAPKLIGGSRAPTPVGDLGFVEMTQALPLSE 368 Query: 341 VRRDYFGSDVCL 352 VR G D+ L Sbjct: 369 VRWQQVGPDLML 380 >gi|262202280|ref|YP_003273488.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM 43247] gi|262085627|gb|ACY21595.1| riboflavin biosynthesis protein RibD [Gordonia bronchialis DSM 43247] Length = 333 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 162/318 (50%), Gaps = 33/318 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M A+ S G+++ NP V +IV + G ++G G TA G PHAE+ AL +AG ARG Sbjct: 7 MRQAITESAAAQGVSTPNPPVGAVIVDRAGTIVGVGHTAPPGGPHAEIVALTQAGAAARG 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 ATA VTLEPC+H GR+ PC+Q +I G+ V V DP+ + G L G+ VD Sbjct: 67 ATAVVTLEPCNHTGRTGPCSQALIAAGVAHVCFGVADPNP-TAAGGADTLRAAGVSVDAG 125 Query: 130 MESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + ++ L +L RQ R +T+K+A S D + + S +TG ++ H R Sbjct: 126 VLADEVAAGPLQPWLHRQTTGRPFVTVKLATSIDGRVAASDGTSQWVTGPAARAHAHERR 185 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 ++ DAI+VG GT LADDP LT R H P R+++ H L D+ + A AP+ Sbjct: 186 SRIDAIVVGTGTALADDPSLTARRPDGTRYPHQPTRVVV-GHRDLPADANLRDDA--APL 242 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + V R+ ++L L +LVEGG +A +F+ + Sbjct: 243 LRVAT----------------------REPAEVLDALDD--ALWVLVEGGPTLAGAFVAA 278 Query: 306 RLVDSIILYRSQIVIGEG 323 LVDS+ Y + +++G G Sbjct: 279 GLVDSVEAYVAPVLLGAG 296 >gi|324999324|ref|ZP_08120436.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudonocardia sp. P1] Length = 368 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 116/356 (32%), Positives = 173/356 (48%), Gaps = 35/356 (9%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 M AL S G TS NP+V C+++ + G V+G G T G PHAE AL EAG+ A G Sbjct: 32 MRRALAASDLVHGTTSPNPAVGCVVLDRAGAVVGTGATTPPGGPHAERVALAEAGDRAAG 91 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-- 127 TA VTLEPC+H GR+PPC ++E GI RV + DP+ V+ GL L GI V Sbjct: 92 GTAVVTLEPCNHSGRTPPCVDGLLEAGIARVYAALADPNP-VAAGGLDRLRAAGIEVTLG 150 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + G+ L +L RQ R H+T K+A + D + A S ITG ++ +VH LR Sbjct: 151 TLAGEVGRGPLRGWLHRQHTGRPHVTWKVATTLDGRVAAADGTSRWITGPEARGEVHDLR 210 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 + DAI+ G GTVL DDP LT R +H P+R+++ H + +++ A Sbjct: 211 RRMDAIVAGTGTVLDDDPALTARRPDGTLFDHQPLRVVV-GHRDVPPGARLSNRA----- 264 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +++ RD ++L LV R +L+EGG +A +F+ + Sbjct: 265 ----------------AGEAEVVHLRTRDPGEVLAELVRRDTVDVLLEGGPTLAGAFVAA 308 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 VD ++++ + ++G G P L + + G DV ++ Sbjct: 309 GAVDRVLVHLAPALLGAG--PHALGDAGVGTIADIVRLQVDEVRRSGGDVVIDGRP 362 >gi|304570635|ref|YP_831168.2| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter sp. FB24] Length = 407 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 92/310 (29%), Positives = 143/310 (46%), Gaps = 33/310 (10%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---EARGATAYVTLEP 78 G NP V +++ DG + G G HAE A+ +AG + G+T VTLEP Sbjct: 32 GPRGANPLVGAVVIGPDGRQLVTGYHRGAGTAHAEADAIAQAGRQGLDLTGSTMVVTLEP 91 Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIF 137 C+H GR+ PCAQ II+ GI VV VDDP +G G L G+ + + Sbjct: 92 CNHCGRTGPCAQAIIDAGIASVVYAVDDPHDPAAG-GAATLRAAGVSVRSGLSARAAFEL 150 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 + + +R +TL IA + D+ I A S I+ S H LR++ DAILVG Sbjct: 151 NRRWFEAVLGQRPFVTLHIAQTLDSRIAAADGTSQWISSPESLADNHGLRSRVDAILVGT 210 Query: 198 GTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 T+L D+P LT R + + P+R ++ + D+ I Sbjct: 211 QTLLVDNPRLTARDASGKPAGNQPLRAVMGLRG-IPDDAAI------------------- 250 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + +++ RD + L L GV ++VEGG+++ +F+ + LVD +I+Y Sbjct: 251 -----HGDDGRVLHLPTRDPHEALERLFSAGVRHVMVEGGSSILSAFLAAGLVDELIVYL 305 Query: 316 SQIVIGEGGI 325 + ++G G Sbjct: 306 APTLLGSGTA 315 >gi|284991537|ref|YP_003410091.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM 43160] gi|284064782|gb|ADB75720.1| riboflavin biosynthesis protein RibD [Geodermatophilus obscurus DSM 43160] Length = 358 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 183/365 (50%), Gaps = 35/365 (9%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 M VS+ + M+ A +G TS NP+V +++ DG +G G TA G PHAEV+A Sbjct: 1 MTVSAAELSAMARARELGAGVLGTTSPNPAVGAVVLAADGTPVGEGATAPPGGPHAEVRA 60 Query: 60 LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 LE+AGE A G TA VTLEPC+H GR+ PCA ++ G+ RVVV V +P +++G G L Sbjct: 61 LEQAGERACGGTAVVTLEPCAHTGRTGPCADALLAAGVARVVVAVPEP-TQLAGGGAARL 119 Query: 120 SQKGIIVDRM--MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 G+ V+ ++ + L A+LT E R + K+A + D + A S +TG Sbjct: 120 RAAGVEVELGVAQQAAEEGALGAWLTGVREGRPFVVWKVAGTLDGRVAAADGSSRWVTGP 179 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSK 235 ++ VH LRA DA+++G GT LADDP+LT R ++ P+R++LD +L ++ Sbjct: 180 DARAAVHRLRATCDAVVIGSGTALADDPQLTVRDADGRDAARQPLRVVLDRRRRLPRTAR 239 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 ++ A AP ++ T ++LL L R V +L+EGG Sbjct: 240 VLDDA--APTLVSTAAS----------------------PRELLGELFARDVRRVLLEGG 275 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVC 351 +A +F+ LVD +++ + ++G G P + G + G DV Sbjct: 276 PTLAAAFLRDGLVDEAVVHLAPKLLGA-GAPLVGDLGITGIGNALTLTVTGLTHLGGDVE 334 Query: 352 LEYIG 356 + Sbjct: 335 IRLRP 339 >gi|311113483|ref|YP_003984705.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC 17931] gi|310944977|gb|ADP41271.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa ATCC 17931] Length = 415 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 97/360 (26%), Positives = 154/360 (42%), Gaps = 32/360 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D R MS A+ +R G+ NP V +I G V+ G G PHAE L +A Sbjct: 44 DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADVLAQARA 101 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + A YV+LEPC+H G++ PC+ I E GI +V D + G ++L Sbjct: 102 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSA-QASGGAEYLRSH 160 Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G++ M E + + EKR IT+K A + D I A S ITG ++ Sbjct: 161 GVVTTYMREFAEDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 220 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIK 238 HL+R ++DA+++G T L D+P L R + P+R+++ + K+ Sbjct: 221 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVM-GETDIPSTYKVCG 279 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 P N + + + LL L RGV L++EGG + Sbjct: 280 LGTRDP--------------------ENYMQVYTHEPRVLLDELYSRGVRHLMIEGGPGM 319 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F L+D ++ YR+ I++G G +N ++ D G + +G++ Sbjct: 320 VGLFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMFPSVRVLGED 379 >gi|296129704|ref|YP_003636954.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM 20109] gi|296021519|gb|ADG74755.1| riboflavin biosynthesis protein RibD [Cellulomonas flavigena DSM 20109] Length = 386 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 112/359 (31%), Positives = 167/359 (46%), Gaps = 38/359 (10%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ + M A + G NP V C+++ + G V+G G G PHAEV AL + Sbjct: 33 AAHELAAMRHAFGLAE--QGPLGPNPRVGCVLLDRAGAVVGEGWHRGAGTPHAEVAALAD 90 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + RGATA VTLEPC H GR+ PC+ +++ G+ RVVV V DP+ V+ G Q L Sbjct: 91 ARERGADVRGATAVVTLEPCDHTGRTGPCSVALLQAGVGRVVVSVQDPNP-VAAGGAQRL 149 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 G+ +V ++ EG L A+L R +TLK+A S D A S IT + Sbjct: 150 RAAGVDVVTGVLADEGTRTLGAWLPAVRRGRPFVTLKLAASLDGRAAAADGSSRWITSDV 209 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKI 236 ++ H LRA+ AI+VG GT L DDP LT R EH P+R+++ H ++ +++ Sbjct: 210 ARRHAHGLRAEVGAIVVGTGTALVDDPSLTARTGDGSLVEHQPLRVVV-GHREVPAGARL 268 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 R ++ D +L L R V +LVEGG Sbjct: 269 ------------------------RGPGGELVQVRTHDPAVVLAALHEREVRHVLVEGGP 304 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 +A +F+ + LVD + Y + +++G G + V G DV + Sbjct: 305 TLAAAFLAAGLVDEVHAYVAPVLLGAGRAAVGDLGVATIADALRLTPVDVVPLGPDVLV 363 >gi|240172784|ref|ZP_04751443.1| bifunctional riboflavin biosynthesis protein RibG [Mycobacterium kansasii ATCC 12478] Length = 339 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 107/360 (29%), Positives = 166/360 (46%), Gaps = 40/360 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M A+ S G T NP V +IV +G V+G G T G HAEV AL AG Sbjct: 10 EDAMRLAIDQSYLVKGSTYPNPPVGAVIVDTEGRVVGVGGTQPTGGDHAEVVALRRAGGL 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 A GA A VT+EPC+HYG++PPC +IE + V+ V DP+ ++G G LS G+ V Sbjct: 70 AAGAIAVVTMEPCNHYGKTPPCVNALIEARVGTVIYGVADPN-GIAGGGAGRLSAAGVQV 128 Query: 127 DRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ L +L +Q H+T K A S D A S I+ ++ +H Sbjct: 129 RSGVLADHVAAGPLREWLHKQRTGLPHVTWKYATSVDGRSAAADGSSQWISSEAARADLH 188 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALL 242 RA +DAI+VG GTVLADDP LT RL L P+R+++ + ++K++ Sbjct: 189 RRRAIADAIVVGTGTVLADDPALTARLPDGSLAPKQPLRVVVGTR-DIPPEAKVLNDDAR 247 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 + + ++L L+ T +L+EGG VA +F Sbjct: 248 T------------------------MVLRTHEPVEVLRALLDY--TDVLLEGGPTVAGAF 281 Query: 303 INSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357 + + I+ Y + I++G G + +++ + +R + G D+ L I + Sbjct: 282 LRCGAISRILAYVAPILLG--GPVTAVDDVGVSSIAHALRWQFDSVEKVGPDLLLSLIPR 339 >gi|260904122|ref|ZP_05912444.1| riboflavin biosynthesis protein RibD [Brevibacterium linens BL2] Length = 359 Score = 236 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/368 (30%), Positives = 168/368 (45%), Gaps = 45/368 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALE 61 + + MSAAL+ +R G NP V I+ +D ++ G A G PHAEV A+ Sbjct: 5 FTELETTAMSAALQAARN--GHRGANPLVGAAILTRDSQIV-VGHHAGAGSPHAEVDAIT 61 Query: 62 EA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A G + +T +VTLEPC+H GR+ PC Q II+ GI VV + D + V+ G Sbjct: 62 TAIDLGVDLTASTLFVTLEPCNHIGRTGPCTQAIIDAGIPEVVFALSDSN-GVAAGGGAT 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 L++ G+ + + E + +R +T+KIA S D M+ + S IT Sbjct: 121 LAEAGVRVRSGLGHDESSALNARWSRAVDAERPFVTVKIAQSLDGMVAASDGTSQWITSA 180 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSK 235 S+ H R++ D ILVG GTVLADDP L R G E P+ I+L L +S Sbjct: 181 ASRVHSHKYRSRVDGILVGTGTVLADDPRLNARGPGGDPLESQPVPIVL-GLTSLPSES- 238 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 F N + ++ RD+ L L RG+ +LVEGG Sbjct: 239 ------------------------FLALNPDTVHLRTRDITAALGELHARGMRHILVEGG 274 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEKNFMCVRRD-------YFG 347 +V +F + +VD + Y++ +++G G S L L + V + G Sbjct: 275 PSVLGAFFAAGVVDEVFCYQAPLLVGAGTSSLSGLGTSTLSEAVGLVSDETAEPAITQLG 334 Query: 348 SDVCLEYI 355 +DV L ++ Sbjct: 335 ADVLLHFV 342 >gi|326388321|ref|ZP_08209917.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium nitrogenifigens DSM 19370] gi|326207053|gb|EGD57874.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium nitrogenifigens DSM 19370] Length = 321 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 119/357 (33%), Positives = 160/357 (44%), Gaps = 44/357 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 DA +M +A + L+ NP+V ++V++ V+GRG T GG PHAE +AL AG Sbjct: 2 PTDADWMRSAAALAARGRPLSRPNPAVGAVLVRENRVVGRGFTRAGGRPHAEAEALAMAG 61 Query: 65 EEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + RGAT YVTLEPC+H R P CA ++ RVVV DPD R +G+G+ L G Sbjct: 62 DATRGATLYVTLEPCAHVSPRGPACADLVVAARPARVVVGCTDPDPRTAGQGIARLRDAG 121 Query: 124 IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 I VD + + L YL R E R +TLK+A S D I + S ITG ++ Sbjct: 122 IAVDLIDCPAARASLAGYLRRTREGRPEVTLKLATSLDGRIALPSGESRWITGDAARAHA 181 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 H RA++DAILVG GT+ D P L RL GL E SP+R Sbjct: 182 HAERARADAILVGGGTLRIDAPRLDVRLPGLAERSPLR---------------------- 219 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++T P A + D L VEGGA A F+ Sbjct: 220 --WVLTRGTAPDGWSAVSDITAPGAFDDA---------------QYLFVEGGAQAAAHFL 262 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEYIG 356 +VD ++LYR+ I+IG+G + V G+D Y Sbjct: 263 AVDMVDRLLLYRAPILIGDGLAAIGDIGLDRLDAAHGRWQLVSHRALGNDTLEIYER 319 >gi|229006420|ref|ZP_04164086.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4] gi|228754830|gb|EEM04209.1| RibD (Riboflavin-specific deaminase) [Bacillus mycoides Rock1-4] Length = 278 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 81/279 (29%), Positives = 132/279 (47%), Gaps = 12/279 (4%) Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 ++RVV+ D + VSG G + L + GI + ++E E + K +T+K Sbjct: 1 MKRVVIATLDCNPLVSGSGAKRLQKAGISVTTSVLEEEATALNRYFFHYMKTKLPFVTIK 60 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 A+S D I S ITG +++ VH R DAIL+G+ TV+AD+P LT RL Sbjct: 61 TAMSLDGKIATTTGESKWITGEVARTDVHQYRHTHDAILIGVNTVIADNPSLTTRLPNG- 119 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC--R 273 P+RIILD H + L S +I + IIV ++ + + + ++++ Sbjct: 120 GKHPIRIILDTHLRTPLSSHVITDEMAPTWIIVGKDVNKEKIAGYESQAVSVLQMKTSQI 179 Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 +++ LL +L + + SL VEGG +V SF+ ++ + I+ Y S +IG P+ Sbjct: 180 EIRDLLLLLGEKQILSLFVEGGQSVHASFLETKCFNEIVTYISPKLIGGKDAPTMFGGTG 239 Query: 334 LEK-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364 K + G D+ + +N CLQEL Sbjct: 240 FIKLQDAISLQIQEMKQIGDDIKIVASVRNEVPACLQEL 278 >gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49] Length = 221 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 88/221 (39%), Positives = 120/221 (54%), Gaps = 5/221 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M AL + + T+ NP V C+IVK G VIG G T G HAEVQAL++ Sbjct: 2 FSDIDFAHMQRALALAARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKD 61 Query: 63 A---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 A G + G+T YVTLEPCSH+GR+PPCA +IE + +VV ++DP+ +VSGRGL L Sbjct: 62 ARARGHDVAGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGML 121 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI + ++ E +++R R + +K A + D + S ITG Sbjct: 122 RDAGIDVRCGLLAHEAGELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDA 181 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 ++ H RA++ AIL GIGTV D+P LT R P Sbjct: 182 ARLDGHAWRARACAILTGIGTVREDNPLLTVR-GIDTPRQP 221 >gi|296448857|ref|ZP_06890691.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium OB3b] gi|296253636|gb|EFH00829.1| riboflavin biosynthesis protein RibD [Methylosinus trichosporium OB3b] Length = 375 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 185/368 (50%), Gaps = 13/368 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 P + D FM+AAL F R ++G T NP+V LIVKDG+VI RG TA GG PHAE A+ Sbjct: 6 PFAQQDDAFMAAALAFGRRNMGRTGPNPAVGALIVKDGVVIARGATAVGGRPHAEAVAVA 65 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGAT Y TLEPCSH+G +PPC II GI RVV ++DPD RV+GRG L + Sbjct: 66 AAGEAARGATLYATLEPCSHHGATPPCVDAIIGAGIARVVSALEDPDARVAGRGHARLRE 125 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFIS 179 GI + + E + ++ R + R +TLK+A + D A ITG ++ Sbjct: 126 AGIEVAVGVRAREARADHLGHILRVTQGRPLVTLKLAQTADGYAAGAEHDPRLFITGAVA 185 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H+ RA AI++G GT DDP LT RL GL+ P+R++LD +LS S++ T Sbjct: 186 DAATHIERALHGAIMIGAGTASVDDPLLTVRLPGLEGVKPLRVVLDAGLRLSRRSRLAAT 245 Query: 240 ALLAPVIIVTEND-------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV 292 A P +++ + A A + L L L RGVT + Sbjct: 246 ARETPTLVIAGEKVAEAAAAEFFDATAIEVARVAQEASGRLVLSAALAELAARGVTRVFS 305 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKN--FMCVRRDYFGS 348 EGG VA S + L D ++L+ + +G G SP LE + GS Sbjct: 306 EGGPRVAESLLLGALADEVVLHTGRKPLGRPGRLALSPAARARLEDRAAYRLADEAMLGS 365 Query: 349 DVCLEYIG 356 D Y Sbjct: 366 DHMTRYER 373 >gi|291334222|gb|ADD93888.1| predicted diaminohydroxyphosphoribosylaminopyrimidine deaminase [uncultured marine bacterium MedDCM-OCT-S08-C1463] Length = 348 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 79/333 (23%), Positives = 143/333 (42%), Gaps = 19/333 (5%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+ F+S A+ V C+IVK+ +IGRG G HAE+ A+ + E+ Sbjct: 3 DSFFISEAISLGLKGRFTAKPGVKVGCVIVKENRIIGRGFYEKYGGSHAEINAINDVKEK 62 Query: 67 AR--------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + G+ +VTLEPCS G++ C + + +R+VV DP + G+ Sbjct: 63 YKKNYLSKLSGSDLFVTLEPCSKKGKTGACVNELKKYDFKRIVVGTKDP----TQNGINN 118 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 L G + + + + ++ + + + K+A+S D+ A ITG Sbjct: 119 LQSAGYELKNLNNQQCQALNESFFHKVKSNKPFVRAKVAMSSDHKSVFASKQRKWITGIP 178 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDS 234 ++N V LRA++D IL G GT+ D+P + R + P R + L+ + Sbjct: 179 ARNNVQTLRAEADIILTGAGTINEDNPSMNVRSKKIIANKNFVQPERYVFSNSLNLNWSA 238 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLV 292 K V++ ++ + P L ++ + + L + + + V ++L+ Sbjct: 239 PFFKLPGK-KVVVTSKKNLPKLPQGINDISLMSLKKNSNSLSSEDFIKRISKLNVNNILI 297 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 E G + SF + L+D I Y S +G + Sbjct: 298 EAGPRLLGSFGDYGLIDEYIFYISPEKLGTKAL 330 >gi|75761017|ref|ZP_00741020.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491503|gb|EAO54716.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 284 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 82/283 (28%), Positives = 131/283 (46%), Gaps = 12/283 (4%) Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSH 151 +RVV+ D + VSG G + L + I + ++E+E + + KR Sbjct: 3 HRKRSKRVVIATLDCNPLVSGNGKRRLEEARIEVTTGVLEAEAVLLNRYFFHYMKTKRPF 62 Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 +T+K A+S D I S ITG ++ VH R DAILVG+ TV+AD+P LT R+ Sbjct: 63 VTIKTAMSLDGKIATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRI 122 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271 P+R++LD H + S +I L IIV ++ ++ KNI I + Sbjct: 123 PNG-GKHPIRVVLDTHLRTPPSSHVITDGLAPTWIIVGKDVKKEKISSYNSKNIAIFQME 181 Query: 272 CR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + +++ LL+ L + + SL VEGG ++ SF+ + + I+ Y S +IG P+ Sbjct: 182 TKHIEIEDLLSFLGEKQILSLFVEGGQSIHASFLKTNNFNEIVTYISPKLIGGKDAPTLF 241 Query: 330 EEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364 K + G D+ + +N CLQEL Sbjct: 242 GGNGFSKLQDALSLKIQEMKQIGDDIKIVANARNEVTECLQEL 284 >gi|261417115|ref|YP_003250798.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373571|gb|ACX76316.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326859|gb|ADL26060.1| riboflavin biosynthesis protein RibD [Fibrobacter succinogenes subsp. succinogenes S85] Length = 421 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 124/419 (29%), Positives = 185/419 (44%), Gaps = 78/419 (18%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL + + +G + NP+V ++VKDGIV+G+G T G HAEV AL +AGE ARG Sbjct: 8 FMQFALEQAFFAIGESRPNPAVGAVVVKDGIVVGKGRTQRPGSAHAEVMALRDAGELARG 67 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A+ +VTLEPC HYGR+PPC + IIE GI++V DP+ V G+ + L + G+ V Sbjct: 68 ASIFVTLEPCCHYGRTPPCTKAIIEAGIQKVYFAHSDPNPVVHGKSRKILEEAGVEVHEG 127 Query: 130 ME-------------------------------------------SEGKIFLHAYLTRQV 146 ++ +E + + AY Sbjct: 128 VDACILACVEDCSNGESCTECRVFEFTSSLPLDKASREAEGLAVFAEVERYFEAYDYFVS 187 Query: 147 EKRSHITLKIAVSQDNMIG----MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 KR+ + +K AVSQD +G + IT + H LRA SDA+LVG GT+LA Sbjct: 188 TKRTFVEVKSAVSQDGFMGCVDKAGNHLPLAITKQGANCWNHELRAMSDAVLVGAGTLLA 247 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIVTENDDPVLAL 258 D+P L R ++P++I+ H + + D KI + P I+ + P L Sbjct: 248 DNPGLDVRYAA--GNNPVKIVWAGHHEFTADEISRLKIFSASDAKP-IVFSCVAQPKL-- 302 Query: 259 AFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----------NSR 306 I+ D + + ++ L RG+ L+VE GA +A Sbjct: 303 -LNVAECVILLNDSFAENWRAMVDDLSARGMHRLMVEPGAGLARELFNGAAVAQSQNAQP 361 Query: 307 LVDSIILYRS---------QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 L + + L+RS + +I G + + LE L N + G DV Y Sbjct: 362 LWNRLDLWRSTDSSVDIALENLIESGAVKAGLEYPELPANIVAKESAVIGPDVLTVYYP 420 >gi|38233905|ref|NP_939672.1| putative riboflavin biosynthesis protein [Corynebacterium diphtheriae NCTC 13129] gi|38200166|emb|CAE49847.1| Putative riboflavin biosynthesis protein [Corynebacterium diphtheriae] Length = 334 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 35/311 (11%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 AA++ G T NP V +++ +G ++GRG T G HAE+ AL +AGE +G T Sbjct: 10 AAVQEGEKAWGTTHPNPPVGAVVLSSNGSIVGRGHTQPPGGSHAEIMALRQAGENTKGGT 69 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 VTLEPC+H+GR+ PC+ I E GI VV + D + G ++L ++G+ V + Sbjct: 70 LVVTLEPCNHWGRTGPCSHAISESGIEHVVYLMQDTGS-LEKGGAEYLRRQGLKVTFLGL 128 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 S L + + ++ K A + D + S ITG S++ + R D Sbjct: 129 S--VAALIPWQASKDRGWPYVVGKTAHTLDGFVAAEDHSSKWITGSASRDYANRQRRHFD 186 Query: 192 AILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI+VG GTV AD+P LT R + H P+++++ K+S +++ ++ Sbjct: 187 AIIVGTGTVKADNPALTARKDDGTLLPHQPLKVVIGTS-KISEGTQLARSG--------- 236 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 + +++ L L RGV +LVEGG + H F+ S +D Sbjct: 237 -------------------FVQFSTIEEALVQLWDRGVRYVLVEGGPHLLHGFLTSGNLD 277 Query: 310 SIILYRSQIVI 320 + Y + +++ Sbjct: 278 QLHSYSAPMLL 288 >gi|28493654|ref|NP_787815.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Tropheryma whipplei str. Twist] gi|28476696|gb|AAO44784.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Tropheryma whipplei str. Twist] Length = 371 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 95/361 (26%), Positives = 152/361 (42%), Gaps = 31/361 (8%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68 M A+ ++ + NP V C+I+ +D +I +G G HAE+ AL A + Sbjct: 16 MHRAITIAQHG-PVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 TA +TLEPCS G++ PC + +++ G++ VV V DP+ G + LS+ G+ I Sbjct: 75 PYTAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITY 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E ++ +V K + K A D + S ITG ++ H++R Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190 Query: 188 AQSDAILVGIGTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +Q DAI +G T+ D+P L L P +I + S + Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRSNTA----------- 239 Query: 246 IIVTENDDPVLALAFRKKNI---NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 L R + + +DLKK + L GV SLL+EGG + SF Sbjct: 240 ----GRGSCELGRCVRGHEVFARDPTILSGKDLKKDMRRLYELGVRSLLLEGGPTLLSSF 295 Query: 303 INSRLVDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNL 359 + LVD +Y + ++G G I +E F FG ++ + I Sbjct: 296 VREDLVDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQ 355 Query: 360 C 360 C Sbjct: 356 C 356 >gi|254445886|ref|ZP_05059362.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium DG1235] gi|198260194|gb|EDY84502.1| riboflavin biosynthesis protein RibD [Verrucomicrobiae bacterium DG1235] Length = 377 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 84/358 (23%), Positives = 144/358 (40%), Gaps = 15/358 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-G 69 M AL +R G T P + +V+ G V+ G EV+ E G + + G Sbjct: 1 MKVALEEARKGWGCTHPQPMIGAALVEAGQVVATSYIEQPGSTAPEVRLFERLGRKPKEG 60 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 A+ ++TLEP R + II+ G+ VV+ DP + +G L + G+ V+R Sbjct: 61 ASLFLTLEPGPSSNRLESGVRAIIDSGVSYVVIGASDPMPEHANKGADALKEGGVKVERR 120 Query: 130 MESEGKIFLHAYLTRQ-VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + E L+ + K A + D I S ITG ++ V R Sbjct: 121 ILIEDCEDLNIISNFWVQNRIPIFAAKSATTLDGKIACRSGESKWITGEQARQNVMKWRR 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KTALLAP 244 +I VG GT++ DDP LT R+ G E PMR + D + ++ + Sbjct: 181 LFPSIAVGAGTLVEDDPRLTSRIEGEPEWCPMRFVFDGLLRTAMGQYLPSIYTDDFRDNT 240 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR----GVTSLLVEGGAAVAH 300 +++ T+ + +N+ ++K ++ R G+ + EGG+ + Sbjct: 241 IVVTTDAAGTGYIRRLETEGVNVWVLPVENMKVPFSVFRKRCADVGINGVYFEGGSRLVS 300 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLE 353 ++ R ++ YR+ I++G+ S EK VR + FG D + Sbjct: 301 ELLHMRELNYHFNYRAPILLGDDKAKSVYRGLRTEKLAQAIRLEKVRHEMFGDDQLMR 358 >gi|172040661|ref|YP_001800375.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium urealyticum DSM 7109] gi|171851965|emb|CAQ04941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium urealyticum DSM 7109] Length = 357 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 159/354 (44%), Gaps = 39/354 (11%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A G T NP V C+IV G ++GRG T G HAEV AL+ AG A GAT Sbjct: 21 LADEMGWQAAGSTRPNPPVGCVIVDSAGTILGRGATEPAGGRHAEVVALQAAGARAAGAT 80 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 AY TLEPC+H GR+ PCA+ +I G+ V DP G G + L G+ V Sbjct: 81 AYATLEPCNHTGRTGPCAEALIAAGVAEVHYLFADPGKAEGGGG-ERLRAAGVTVSGPYL 139 Query: 132 SEGKIFLHAYLTRQVEK-----RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + H + + R H+TLK A + + M S ITG ++ VH Sbjct: 140 EPFHLGEHRFSVEPWLRAAYLGRPHVTLKFASTLNGMAAATDRTSQWITGPTARADVHAD 199 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPV 245 R +AILVG GTVLADDP+LT R G++ P+R + ++ +++++ A Sbjct: 200 RQYREAILVGTGTVLADDPQLTARPGGVEGPRQPLRFAVGQR-EIPSSARLLQPGAHA-- 256 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + RDL+ LT L +G++ +LVEGG +A SF+ Sbjct: 257 -------------------LAGQHLPTRDLEAALTTLRRQGISDVLVEGGPELAGSFLAH 297 Query: 306 RLVDSIILYRSQIV-------IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 LVD I Y + +G+GGI S + F G D+ Sbjct: 298 GLVDEIRAYLAPAWLPRGLPALGDGGIGSTSITDL--QRFATRSVQRIGEDILW 349 >gi|303277803|ref|XP_003058195.1| predicted protein [Micromonas pusilla CCMP1545] gi|226460852|gb|EEH58146.1| predicted protein [Micromonas pusilla CCMP1545] Length = 628 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 89/372 (23%), Positives = 144/372 (38%), Gaps = 24/372 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V+ D ++ A+ + GLT +P C++V DG V+ G AEV A + Sbjct: 55 VTLADLEHVARAVELAGESDGLTQPHPKSGCVLVAADGGVVAETFQLGQGGARAEVLAAD 114 Query: 62 EAGEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 A A G AY+ LEP + + G+ RVV+ + P + L Sbjct: 115 AANGGAAGGCAYLNLEPVHGNDAGEDAGVNALHRAGVTRVVIGIAHPIPGTRHAAVDALR 174 Query: 121 QKGIIVDRMMESEGK------------IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 +G+ V + + + A L R R LK A++ D I Sbjct: 175 ARGVHVVVLGDDDLDEREEEAKQRGEAARNRALLYRVATGRPFSVLKYAMTVDGKIATTS 234 Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228 S +TG ++ V RA+SDA++VG TV D+P LT R H P R++L Sbjct: 235 GHSSWVTGPTARGAVWAERARSDAVVVGGSTVRRDNPNLTTRR--KDGHLPARVVLSRTM 292 Query: 229 KLS-LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 L + + T+ +++ P R+ + +I D + RG Sbjct: 293 DLPGPRTNLWDTSEAPTIVMTRTGARPEFQAQLRELGVEVIEFDDLTPSAVAEYCGKRGY 352 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEKNFMCVRRDY 345 L E G +A +N ++ ++ + + +IG G PSP+ E L+ + Sbjct: 353 LQLFWECGGGLAAPALNDGVIHHVMAFIAPKIIGSSGGPAPSPVGETGLDLMTDAMTLRG 412 Query: 346 F-----GSDVCL 352 G DV L Sbjct: 413 LALSTHGRDVLL 424 >gi|297804068|ref|XP_002869918.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] gi|297315754|gb|EFH46177.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis lyrata subsp. lyrata] Length = 426 Score = 230 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 91/360 (25%), Positives = 163/360 (45%), Gaps = 21/360 (5%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I+ ++RVVV + DP+ VS G+ L GI Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVSSSGISRLKDAGID 192 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183 V +E E K ++ R + ++ + L+ ++S + + G G+ G+ SK Sbjct: 193 VTVGVEEELCKKMNEGFIHRMLTEKPFLALRYSMSVNGCFLDKIGEGASDSGGYYSK--- 249 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF-KLSLDSKIIKTALL 242 L + DAI++ ++ + P++II+ + + + + Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEATNVSIQPIQIIVARNAQQSPILASSNTVEES 306 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL---------VE 293 P +++ + + + + + +L +L RG+ S+L +E Sbjct: 307 GPKVVLFTAKELLAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVKDLE 366 Query: 294 GGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 + +L+ +I+ + + K ++ G +V LE Sbjct: 367 ---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKQVKDLQSKQLGGNVLLE 423 >gi|256378033|ref|YP_003101693.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM 43827] gi|255922336|gb|ACU37847.1| riboflavin biosynthesis protein RibD [Actinosynnema mirum DSM 43827] Length = 341 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 100/324 (30%), Positives = 145/324 (44%), Gaps = 30/324 (9%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M+ AL + NP V C+++ DG V+ G G HAE AL EAG Sbjct: 5 HEAMARALELAATPGVPLGPNPRVGCVLLADDGTVVAEGHHRGAGTAHAEADALAEAGAA 64 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 ARG TA VTLEPC+H GR+ PCA+ ++E G+RRVV DP+ V+ G + L GI + Sbjct: 65 ARGTTAVVTLEPCNHTGRTGPCARALVEAGVRRVVFAQSDPNP-VATGGTRTLRDAGIEV 123 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 +M + A++ R +T K A S D A S I+ ++ VH Sbjct: 124 EHGLMADRARALNRAWVFGVEHGRPLVTWKFAASLDGRSAAADGTSRWISNSAARADVHR 183 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLA 243 LRA D +LVG T + DDP LT R H P+R +L +L ++ + Sbjct: 184 LRAGCDVVLVGAETAVVDDPRLTARGPDDAPLAHQPLRAVLGER-ELPPTLRLFDGS--- 239 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 + RD + L L G + +EGG VA +F+ Sbjct: 240 ---------------------AEVAQLRTRDPRAALAELFELGRRHVFLEGGPTVAAAFL 278 Query: 304 NSRLVDSIILYRSQIVIGEGGIPS 327 + LVD I+ Y + +++G G + Sbjct: 279 RAGLVDEIVAYVAPVLLGAGRAAA 302 >gi|257067228|ref|YP_003153483.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Brachybacterium faecium DSM 4810] gi|256558046|gb|ACU83893.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Brachybacterium faecium DSM 4810] Length = 355 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 144/329 (43%), Gaps = 37/329 (11%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63 + R ++ AL + NP V C+++ DG ++ G G HAE AL A Sbjct: 4 DTERRALARALEIAADPSVPLGPNPRVGCVLLGADGAMLAEGHHRGAGTAHAEADALARA 63 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G GATA VTLEPC+H GR+ PCA+ ++E GI RVV+ DP+ V+ G+ L Sbjct: 64 RSLGIPLTGATAVVTLEPCAHTGRTGPCAEALLEAGIGRVVIARTDPNP-VASGGIDRLR 122 Query: 121 QKGIIVD----RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 GI V+ + + + R +T K A++ D A S ITG Sbjct: 123 AAGIDVELDVPEALAAAAAALNRGWEHGLRHSRPLVTAKTALTLDGRAAAADGTSQWITG 182 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 ++ +VHLLR D +LVG GT D P LT R L P+R ++ Sbjct: 183 PAAREEVHLLRTTCDTVLVGTGTARIDQPTLTARRPDGALHPRQPLRAVM---------- 232 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 P + E + LA RD L L RG +L+EG Sbjct: 233 ----GTSAVPTLPAVEGAGQQVRLA------------TRDPSAALAELFARGARHVLLEG 276 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G + +F+ + LVD +IL+ + ++G G Sbjct: 277 GPTLTAAFLRAGLVDELILHLAPTLLGAG 305 >gi|308177749|ref|YP_003917155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Arthrobacter arilaitensis Re117] gi|307745212|emb|CBT76184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase [Arthrobacter arilaitensis Re117] Length = 346 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 109/361 (30%), Positives = 154/361 (42%), Gaps = 46/361 (12%) Query: 12 SAALRFSRWHVGLTSTNPSVA-CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE----E 66 AL + G NP V C++ +G +I G G PHAEV AL G+ + Sbjct: 12 RTALETA--GRGYRGANPLVGACVLDAEGNIIATGFHLGAGHPHAEVDALRRLGKMSPAK 69 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 AR T VTLEPC+H GR+ PCA+ I E GI +V V PD + G +L +GI Sbjct: 70 ARELTMVVTLEPCNHTGRTGPCARAIAEAGIGQVHYAV--PDNTAASGGADYLRSQGIQA 127 Query: 127 DRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ S+ + + E R IT+KIA S D I S IT S+N H Sbjct: 128 TQLECSDAARNLNQRWFIAKAEGRPFITVKIAQSLDGRINAPDGTSKWITSEASRNHAHG 187 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 LR++ DAI+VG T + DDP LT R L E P R+++ +L D +++ Sbjct: 188 LRSRVDAIMVGTNTAVIDDPRLTARTPTGELHERQPFRLVMGER-ELPNDLALMQGDDWE 246 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 ++ RD+ + + G LLVEGGA VA +FI Sbjct: 247 QIL-------------------------TRDVHEAIVRANELGFGHLLVEGGATVASAFI 281 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD--------YFGSDVCLEYI 355 + L D I Y++ ++IG G + R D G D+ L Sbjct: 282 AADLADEIYCYQAPLMIGAGSSSVNMPSTSTLSEARRFRLDSASRESLTRLGDDIALHLE 341 Query: 356 G 356 Sbjct: 342 P 342 >gi|87200870|ref|YP_498127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium aromaticivorans DSM 12444] gi|87136551|gb|ABD27293.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Novosphingobium aromaticivorans DSM 12444] Length = 323 Score = 229 bits (583), Expect = 7e-58, Method: Composition-based stats. Identities = 126/358 (35%), Positives = 175/358 (48%), Gaps = 44/358 (12%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D R++ AA L+ NP+V +IV DG+V+GRG T GG PHAE AL A Sbjct: 3 AADDLRWLDAAASLGARGRPLSRPNPAVGAVIVNDGVVVGRGWTQAGGRPHAEAGALMAA 62 Query: 64 GEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G+ A+GAT YVTLEPC+H R P C +++ G+ RVV+ ++DPD R +G G+ L Sbjct: 63 GDAAQGATLYVTLEPCAHASERGPSCTSLVLKSGLARVVIGIEDPDPRTAGGGIAALRSA 122 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 GI D + + + L YL R R H+TLK+A S D I +A S ITG ++ Sbjct: 123 GIAADVVPSAAARASLVGYLVRTATGRPHVTLKLATSLDGRIALADGTSKWITGPEARAH 182 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 H+ RA++DAILVG GT+ AD P L RL GL+ SP R++L ++ D Sbjct: 183 CHVERARADAILVGGGTLRADAPRLDVRLPGLEARSPKRMVLTRG--IAPDGW------- 233 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSF 302 T D AF L VEGGA A +F Sbjct: 234 ------TGVADIAATGAFGDA------------------------QYLFVEGGAGAAAAF 263 Query: 303 INSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + + +VD +++YR+ +VIG+G G G + V R GSD Y Sbjct: 264 LAADMVDRLLIYRAPVVIGQGLPCIGDIGLGSLGEAHGRWRNVDRRTLGSDNLDVYER 321 >gi|3378525|emb|CAA08869.1| riboflavin-specific deaminase [Thermotoga neapolitana] Length = 241 Score = 229 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 93/241 (38%), Positives = 130/241 (53%), Gaps = 10/241 (4%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG-GCPHAEVQALEEA--- 63 RFM A+ ++ +G + NP V ++VK+G +I G PHAE A+E A Sbjct: 3 ERFMKRAIELAKKGLGRVNPNPPVGAVVVKEGRIISEGFHPLFLVGPHAERVAIESAKRK 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE+ G T VTLEPC H+G++PPC IIE GI++VV+ + DP+ VSG G++ L + G Sbjct: 63 GEDLTGTTLVVTLEPCDHHGKTPPCTDLIIESGIKKVVIGMRDPNP-VSGSGVEKLKKHG 121 Query: 124 IIVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I V + E L ++T E R I LK A + D I A S IT + +++ Sbjct: 122 IEVVEGVLEEEVKKLCEFFITYVTENRPFIALKYASTLDGKIADAEGNSKWITQDL-RHK 180 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS-KIIKTAL 241 H +R A+LVG TVL DDP LTCRL G +P R+ILD LS S ++ + Sbjct: 181 AHEMRNVYSAVLVGARTVLKDDPRLTCRLKG--GRNPTRVILDRRGILSGGSYRVFEDNA 238 Query: 242 L 242 Sbjct: 239 R 239 >gi|21618159|gb|AAM67209.1| probable riboflavin biosynthesis related protein [Arabidopsis thaliana] Length = 426 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183 V +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 249 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239 L + DAI++ ++ + P++II+ + + S I+ Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 303 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291 P ++V + V + + + +L +L RG+ S+L Sbjct: 304 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 363 Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +E + +L+ +I+ + + K+ ++ G V Sbjct: 364 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 420 Query: 351 CLE 353 LE Sbjct: 421 LLE 423 >gi|18415600|ref|NP_567618.1| cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] gi|26452452|dbj|BAC43311.1| unknown protein [Arabidopsis thaliana] gi|29824151|gb|AAP04036.1| unknown protein [Arabidopsis thaliana] gi|332658979|gb|AEE84379.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arabidopsis thaliana] Length = 426 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 73 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 132 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183 V +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 193 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 249 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239 L + DAI++ ++ + P++II+ + + S I+ Sbjct: 250 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 303 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291 P ++V + V + + + +L +L RG+ S+L Sbjct: 304 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 363 Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +E + +L+ +I+ + + K+ ++ G V Sbjct: 364 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 420 Query: 351 CLE 353 LE Sbjct: 421 LLE 423 >gi|28572847|ref|NP_789627.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27] gi|28410980|emb|CAD67365.1| riboflavin biosynthesis protein RibD [Tropheryma whipplei TW08/27] Length = 371 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 98/358 (27%), Positives = 155/358 (43%), Gaps = 25/358 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE-EAR 68 M A+ ++ + NP V C+I+ +D +I +G G HAE+ AL A + Sbjct: 16 MHRAITIAQHG-PVFDRNPQVGCVILDRDYQLISQGWHMGSGSEHAEIMALRGAKSILSE 74 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVD 127 A +TLEPCS G++ PC + +++ G++ VV V DP+ G + LS+ G+ I Sbjct: 75 PYAAVITLEPCSSAGQTGPCVRALLDAGVKHVVFGVHDPE----SSGAKVLSEAGVKITY 130 Query: 128 RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 ++E E ++ +V K + K A D + S ITG ++ H++R Sbjct: 131 GVLEREVWGLCAKHILPKVRKTPWVIAKRAQGLDGRMSAPDGSSKWITGPYARGHAHVIR 190 Query: 188 AQSDAILVGIGTVLADDPELTC--RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +Q DAI +G T+ D+P L L P +I + S TA Sbjct: 191 SQVDAIAIGSNTLCCDNPSLRAFHPAGHLYAKQPKVVIFSGRPRRS------NTAGRGS- 243 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 E V F ++ I+ +DLKK + L GV SLL+EGG + SF+ Sbjct: 244 ---CELGRCVRGHEFFARDPTILS--GKDLKKDMRRLYELGVRSLLLEGGPTLLSSFVRE 298 Query: 306 RLVDSIILYRSQIVIGE--GGIPSPLEEGYLEKNFMCVRRDYFGS-DVCLEYIGKNLC 360 LVD +Y + ++G G I +E F FG ++ + I C Sbjct: 299 DLVDEFYIYTAPKLLGGGYGDINIGVESISDSFAFQLNSVTRFGDNNLLIRAIKPIQC 356 >gi|167565784|ref|ZP_02358700.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis EO147] Length = 357 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 103/325 (31%), Positives = 148/325 (45%), Gaps = 21/325 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I D V+G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHDEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V+ + Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ME+E + + +R R K+ +S D + + T S++ V RA+ Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S +L G P R P ++ F +LD+ T + P + + Sbjct: 181 SSVVLAPHGV-----PFPAARNGAA----PGYVVRSRDFA-ALDASPATTEGV-PTLALH 229 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D V A + D L L L +GV L ++ A+ + Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328 L D ++LY G+P P Sbjct: 290 EGDLADELLLYVHPS---RCGVPVP 311 >gi|300741401|ref|ZP_07071422.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567] gi|300380586|gb|EFJ77148.1| riboflavin biosynthesis protein RibD [Rothia dentocariosa M567] Length = 374 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 32/360 (8%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA-- 63 D R MS A+ +R G+ NP V +I G V+ G G PHAE AL +A Sbjct: 3 DDRAMSLAIEAAR--QGIRGANPLVGAVITNSAGQVLHIGWHRGAGTPHAEADALAQARA 60 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 G + A YV+LEPC+H G++ PC+ I E GI +V D + G ++L Sbjct: 61 AGTDMSDAKMYVSLEPCNHTGKTGPCSHAIKEAGISQVFYAYPDRSA-QASGGAEYLRSH 119 Query: 123 GIIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI+ M E + + EKR IT+K A + D I A S ITG ++ Sbjct: 120 GIVTTYMREFADDSYALNERWFISVAEKRPFITVKSASTLDGFIAAADGTSKWITGSQAR 179 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRIILDPHFKLSLDSKIIK 238 HL+R ++DA+++G T L D+P L R + P+R+++ + K+ Sbjct: 180 ADGHLIRKRADAVMIGTRTTLLDNPSLDARDISGQRYKKQPLRVVM-GETDIPSTYKVCG 238 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 P N + + + LL L RGV L++EGG + Sbjct: 239 LGTRDP--------------------ENYMQVYTHEPRVLLDELYSRGVRHLMIEGGPGM 278 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 F L+D ++ YR+ I++G G +N ++ D G + +G++ Sbjct: 279 VGLFTGEDLLDELVWYRAPILMGHGKSAMYRLITNTLENAPRLQLDDLGMLPAVRVLGED 338 >gi|295395079|ref|ZP_06805288.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] gi|294972027|gb|EFG47893.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] Length = 336 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 109/360 (30%), Positives = 154/360 (42%), Gaps = 47/360 (13%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-GA 70 AAL + G+ NP V ++ D G G PHAE A+ A + GA Sbjct: 9 RAALGAA--TRGVRGANPLVGAAVLWDDGTFTTGYHQGAGTPHAEPDAIRNASPRSTTGA 66 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---- 126 T VTLEPCSH GR+ PC Q II+ GI RVV+ DP+ + G Q L++ G+ V Sbjct: 67 TLVVTLEPCSHTGRTGPCTQAIIDAGITRVVIASRDPNP-QASGGAQTLTEAGVEVLFLN 125 Query: 127 ------DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + ++ + T R IT KIA S D + S ITG S+ Sbjct: 126 DLGQSWAHEVATQAHRLNARWFTAVTHDRPFITAKIAQSLDGCVAARDRTSQWITGAESR 185 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 HL RA+ DAI VG GT AD+P LT R G H P+ ++ L DS + Sbjct: 186 AHAHLTRARVDAIAVGTGTAHADNPRLTAR-TGDSPHQPIPVVFGTTA-LPGDSHL---G 240 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + +E L L RGV+ LL+EGG + Sbjct: 241 RNPRTLTYSEVGAG------------------------LRDLRRRGVSHLLLEGGPTLMA 276 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGK 357 F+ LVD + +Y + +++G+ GI +PL L + V + GSD ++ + Sbjct: 277 HFLQHDLVDELHVYTAPLLLGD-GIRAPLSVDTLAQGLRFVPDAPPEALGSDTFTRFMKE 335 >gi|325860399|ref|ZP_08173511.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS 18C-A] gi|325482057|gb|EGC85078.1| riboflavin biosynthesis protein RibD [Prevotella denticola CRIS 18C-A] Length = 380 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 157/387 (40%), Gaps = 37/387 (9%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G H+EV A Sbjct: 1 MKQEETDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHSEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165 ++ L + GI + ++E E ++T R ++ LK A ++ Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNILFNTPTNT 180 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218 ++ + P + + R D +I+ G + + T L G H Sbjct: 181 LSNTPASPSPSPLPHREGSKHRDSPDDLSIINGSQDEITAREKKTSAAYIGNLPGKDYHP 240 Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 P +L + D+ ++ L P + V E P + Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPT-REG 299 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 + + L+ L SL+VEGGA SF+++ L D I + + + + GI +P Sbjct: 300 EYATPAEALSHLYEEKKQSLVVEGGAKTLQSFLDAGLWDEIRIETAPFTV-DKGIEAP-- 356 Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L + + + + + + Y + Sbjct: 357 --KLPEKLRITKVEKY-VNTIVTYERE 380 >gi|5262786|emb|CAB45891.1| putative protein [Arabidopsis thaliana] gi|7268893|emb|CAB79096.1| putative protein [Arabidopsis thaliana] gi|45268463|gb|AAS55854.1| pyrimidine deaminase [synthetic construct] Length = 363 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 163/363 (44%), Gaps = 27/363 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D+ +M + ++ +G TS NP V C+IVKDG ++G+G G PHAEV AL +AGE Sbjct: 10 DDSFYMRKCVELAKRAIGCTSPNPMVGCVIVKDGDIVGQGFHPKAGQPHAEVFALRDAGE 69 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC + +I+ +RRVV+ + DP+ V G+ L GI Sbjct: 70 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 129 Query: 126 VDRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQD-NMIGMAGCGSVPITGFISKNQV 183 V +E E K ++ R + + + L+ ++S + ++ G G+ G+ SK Sbjct: 130 VTVSVEEELCKKMNEGFIHRMLTGKPFLALRYSMSVNGCLLDKIGQGASDSGGYYSK--- 186 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII----KT 239 L + DAI++ ++ + P++II+ + + S I+ Sbjct: 187 --LLQEYDAIILSSSLSDELS-SISSQEAINVSIQPIQIIVASNAQ---QSHILASSHTV 240 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL-------- 291 P ++V + V + + + +L +L RG+ S+L Sbjct: 241 EESGPKVVVFTAKESVAESGISSSGVETVVLEKINLDSILDYCYNRGLCSVLLDLRGNVK 300 Query: 292 -VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 +E + +L+ +I+ + + K+ ++ G V Sbjct: 301 DLE---VLLRDGFEQKLLQKVIIEVLPEWSTKDERQIASMKWLESKHVKDLQSKQLGGSV 357 Query: 351 CLE 353 LE Sbjct: 358 LLE 360 >gi|119961067|ref|YP_947578.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1] gi|119947926|gb|ABM06837.1| riboflavin biosynthesis protein RibD [Arthrobacter aurescens TC1] Length = 373 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 155/329 (47%), Gaps = 35/329 (10%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 ++ ++ M AAL + G NP V +I+ DG + G G HAE A+ Sbjct: 7 SYTAAESEAMDAALTAAL--AGPRGANPLVGAVILSPDGEQLATGYHRGAGTAHAEADAI 64 Query: 61 EEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 EA G + G T VTLEPC+H GR+ PCAQ II GI +V+ VDDP +G G + Sbjct: 65 SEARKKGIDIVGTTMVVTLEPCNHVGRTGPCAQAIIAAGIAKVIYAVDDPHDPAAG-GAR 123 Query: 118 WLSQKGIIVDRMMESEGKIF-LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 LS G+ V +E E + + KR +TL IA + D+ I S I+ Sbjct: 124 TLSAAGVEVISGLEGEKALDLNRDWFDAVAAKRPFVTLHIAQTLDSRIAAVDGTSQWISC 183 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDS 234 S H LR DAILVG GTVL DDP LT R L H P+R ++ + D+ Sbjct: 184 PESLADNHGLRGLIDAILVGTGTVLVDDPRLTARTPDGELSAHQPIRAVMGLR-DVPQDA 242 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + R + ++ RD + L +L +GV L+VEG Sbjct: 243 AV------------------------RGNDGRFVHLPTRDPAEALGMLFEKGVRHLMVEG 278 Query: 295 GAAVAHSFINSRLVDSIILYRSQIVIGEG 323 G+++ +F+ + LVD +I+Y + ++G G Sbjct: 279 GSSILSTFLAADLVDELIVYLAPTLLGSG 307 >gi|327312630|ref|YP_004328067.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289] gi|326946400|gb|AEA22285.1| riboflavin biosynthesis protein RibD [Prevotella denticola F0289] Length = 380 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 97/358 (27%), Positives = 147/358 (41%), Gaps = 32/358 (8%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D +M L+ +R L NP V +IV KDG +IG G G HAEV A Sbjct: 1 MKQEKTDEIYMRRCLQLARNGQQLAKPNPMVGAVIVSKDGRIIGEGYHVRCGEGHAEVNA 60 Query: 60 LEEAGEEARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E AT YV+LEPCSHYG++PPCA II G+RRVV DP +V GRG Sbjct: 61 FASVRKEDEALLHEATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFSKVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ---------DNMIG 165 ++ L + GI + ++E E ++T R ++ LK A ++ Sbjct: 121 VKRLREAGIDVTVGVLEKECLELNKRFITYNTHHRPYVILKWAQTKRVTTNTLSNTPTNT 180 Query: 166 MAGCGSVPITGFISKNQVHLLRAQSD--AILVGIGTVLADDPELTC-----RLNGLQEHS 218 ++ + P + + R +D +I+ G + + T L G H Sbjct: 181 LSNTPASPSPSPLPHREGSEHRDSTDDLSIINGSQDEITAREKKTSVAYIGNLPGKDYHP 240 Query: 219 -----PMRIILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 P +L + D+ ++ L P + V E P + Sbjct: 241 LIISTPFTKMLVHKLRAENDAILVGKTTEELEHPQLTVREWSGPNPEKLVLTSHPT-REG 299 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 + + L L SL+VEGG SF+++ L D I + + +G GI +P Sbjct: 300 EYATPAEALAHLYEEKKQSLVVEGGVKTLQSFLDAGLWDEIRIETAPFTVG-KGIEAP 356 >gi|227503568|ref|ZP_03933617.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium accolens ATCC 49725] gi|227075604|gb|EEI13567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium accolens ATCC 49725] Length = 344 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 115/354 (32%), Positives = 163/354 (46%), Gaps = 31/354 (8%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGAT 71 A++ G TS NP V +I+ G V+G G T G HAEV AL AGE+ARG T Sbjct: 16 QAMQAGAAVRGTTSPNPPVGAVILSATGAVVGIGATQPVGGAHAEVMALRAAGEKARGGT 75 Query: 72 AYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME 131 A VTLEPC+H GR+ PCA +I+ GI RV DP + G + + Sbjct: 76 AVVTLEPCAHTGRTGPCATALIDAGIARVFYLHPDPTPQAGGGAQALAAAGVEVGRLTAP 135 Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 + + A+L +R H+TLK A + D A S ITG ++ VH RA+ D Sbjct: 136 DGVEDAVRAWLRAVKLQRPHVTLKFAQTLDGFTAAADGTSQWITGPKAREWVHADRARRD 195 Query: 192 AILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 AI++G GT LAD+P LT R L+EH P R+++ K L + Sbjct: 196 AIIIGTGTALADNPSLTARFSDGSLREHQPRRVVI---GKRDLQA-------------AG 239 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 E + L F + + ++ L L G +LVEGGA +A FI + D Sbjct: 240 EKASHLQQLGFEQYD---------TIEGALKELYASGARDVLVEGGAGLAQGFIEAGAAD 290 Query: 310 SIILYRSQIVIGEGG---IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 ++ Y + I++G+G + +F VR G DV +EY +N Sbjct: 291 ALAAYIAPILLGQGRGVLANAVAHTLADAPHFTTVRTTSLGPDVLIEYEARNER 344 >gi|167572878|ref|ZP_02365752.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis C6786] Length = 357 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 102/325 (31%), Positives = 147/325 (45%), Gaps = 21/325 (6%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I V+G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTRPNPRVGCVIAHGEQVLGTGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPC+HYGR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V+ + Sbjct: 61 TAYVTLEPCAHYGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ME+E + + +R R K+ +S D + + T S++ V RA+ Sbjct: 121 MEAEARELNIGFFSRIERGRPWTRAKLILSIDGPLDGIDRTVLDATESESRDDVRHWRAR 180 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S +L G P R P ++ F +LD+ T + P + + Sbjct: 181 SSVVLAPHGV-----PFPAARNGAA----PGYVVRSRDFA-ALDASPATTEGV-PTLALH 229 Query: 250 ENDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFI 303 D V A + D L L L +GV L ++ A+ + Sbjct: 230 REDAGVAAGYATARADAPAAGTSADAGADLRLPDALARLAAQGVNELFIDADLALCDALF 289 Query: 304 NSRLVDSIILYRSQIVIGEGGIPSP 328 L D ++LY G+P P Sbjct: 290 EGNLADELLLYVHPS---RCGVPVP 311 >gi|306836172|ref|ZP_07469157.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726] gi|304567955|gb|EFM43535.1| riboflavin biosynthesis protein RibD [Corynebacterium accolens ATCC 49726] Length = 307 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 108/327 (33%), Positives = 152/327 (46%), Gaps = 30/327 (9%) Query: 39 GIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 G V+G G T G HAEV AL AGE+ARG TA VTLEPC+H GR+ PCA +I+ GI Sbjct: 6 GAVVGIGATQPVGGAHAEVMALRAAGEKARGGTAVVTLEPCAHTGRTGPCATALIDAGIA 65 Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 RV D + G + + + + A+L +R H+TLK A Sbjct: 66 RVFYLHPDSTPQAGGGAQALAAAGVEVGRLTAPDGVEDAVRAWLRAVKLQRPHVTLKFAQ 125 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQE 216 + D A S ITG ++ VH RA+ DAI++G GT LAD+P LT R L+E Sbjct: 126 TLDGFTAAADGTSQWITGPKAREWVHADRARRDAIIIGTGTALADNPSLTARFSDGSLRE 185 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 H P R+++ K L + E + L F + + ++ Sbjct: 186 HQPRRVVI---GKRDLQA-------------AGEKASHLQRLGFEQYD---------TIE 220 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG---IPSPLEEGY 333 L L G +LVEGGA +A SFI + VD++ Y + I++G+G + Sbjct: 221 GALKELYASGARDVLVEGGAGLAQSFIEAGAVDTLAAYIAPILLGQGRGVLANAVAHTLA 280 Query: 334 LEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +F VR G DV +EY +N Sbjct: 281 DAPHFTTVRTTSLGPDVLIEYEARNER 307 >gi|218680684|ref|ZP_03528581.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidinedea [Rhizobium etli CIAT 894] Length = 307 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 129/223 (57%), Positives = 164/223 (73%), Gaps = 1/223 (0%) Query: 31 VACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQ 90 V CLIVKD +V+G+ VTA GG PHAE QAL EAGE ARGATAYVTLEPCSH+G++PPCA+ Sbjct: 1 VGCLIVKDSVVVGQAVTAVGGRPHAEPQALAEAGEAARGATAYVTLEPCSHHGKTPPCAE 60 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKR 149 +I G+ RVV+ V DPD RVSGRG+ L + GI VD ++E+EG+ L AYLTRQ + R Sbjct: 61 ALIAYGVARVVISVTDPDPRVSGRGIAMLREAGIEVDAGVLEAEGRRSLAAYLTRQTKNR 120 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++TLK+AVS D MIG G G V ITG ++ +V LRA++DAILVGIGT ++DDP LT Sbjct: 121 PYVTLKLAVSADGMIGREGEGQVAITGPEARAEVQALRAETDAILVGIGTAISDDPLLTV 180 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 R GL+ SP+RI+LDP L L S+++ TA PVI+V + Sbjct: 181 RTPGLEAQSPIRIVLDPSLALPLTSRLVATAREVPVILVASEE 223 >gi|302345996|ref|YP_003814349.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica ATCC 25845] gi|302150238|gb|ADK96500.1| riboflavin biosynthesis protein RibD [Prevotella melaninogenica ATCC 25845] Length = 372 Score = 225 bits (574), Expect = 8e-57, Method: Composition-based stats. Identities = 102/373 (27%), Positives = 160/373 (42%), Gaps = 38/373 (10%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M D ++M L+ +R L NP V +IV K+G +IG G G HAEV A Sbjct: 1 MKQEKTDEKYMRRCLQLARNGQQLAKPNPMVGAVIVSKEGRIIGEGYHVRCGKGHAEVNA 60 Query: 60 LEEAGEE----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +E R AT YV+LEPCSHYG++PPCA II G+RRVV DP V GRG Sbjct: 61 FASVRKEDEALLREATVYVSLEPCSHYGKTPPCADLIISKGVRRVVCGCIDPFAEVQGRG 120 Query: 116 LQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA-GCGSVP 173 ++ + + GI + ++E E ++T KR ++ LK A ++ + + P Sbjct: 121 VKKIREAGIEVTVGVLEKECLELNKRFITYNTHKRPYVILKWAETESRLTNTPFNTPASP 180 Query: 174 ITGFISKNQVHLLRAQ-SDA-ILVGIGTVLADDPELTCRLNGL---------QEHSPMRI 222 + + R +DA I+ G DD TC N +++ P+ I Sbjct: 181 SPLPLPHREGSNHRDTPNDASIINGSK----DDVT-TCTNNSAVAYIGNLPDKDYQPLII 235 Query: 223 ------ILDPHFKLSLDSKII---KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR 273 +L + D+ ++ L P + V E P + Sbjct: 236 STPFTKMLVHKMRAENDAILVGKTTEELEQPQLTVREWSGPSPEKLVLTSQPT-KAGEYA 294 Query: 274 DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 ++L+ L SL+VEGGA SF+++ L D I + + + EG +E Sbjct: 295 TPAEVLSHLYAEKKQSLIVEGGAKTLQSFLDAGLWDEIRIESAPFTVNEG-----IEAPK 349 Query: 334 LEKNFMCVRRDYF 346 L +N ++ + + Sbjct: 350 LPENIRVIKVEKY 362 >gi|297182203|gb|ADI18374.1| pyrimidine deaminase [uncultured actinobacterium HF4000_04C13] Length = 338 Score = 225 bits (573), Expect = 1e-56, Method: Composition-based stats. Identities = 118/342 (34%), Positives = 161/342 (47%), Gaps = 40/342 (11%) Query: 24 LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYG 83 TS NP V ++V DG ++G G T G HAE AL EAG A GAT Y TLEPC H G Sbjct: 26 RTSPNPRVGAVVVVDGRMVGSGATQPPGGAHAERVALAEAGPAAAGATLYTTLEPCDHEG 85 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYL 142 R+ PC II G+ RVVV + DPD VSGRG+ L + G+ + ++E E L YL Sbjct: 86 RTAPCTDAIIGAGVARVVVGIGDPDPEVSGRGIGRLREAGLDVDVGVLEDEVSDTLAPYL 145 Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + R ++ LK+A + D I S ITG ++ VH LRA DAI VG GT+ A Sbjct: 146 HHRRTGRPYVVLKLAATLDGRIAAPDGTSRWITGSEARLDVHRLRASCDAICVGAGTIRA 205 Query: 203 DDPELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 DDP L R + P R++L ++ ++++ A Sbjct: 206 DDPRLDVRDADGEVEGGDPPRRVVL---GEIPAGARVL------------------PADE 244 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + ++ D GV LLVEGGA VA F + LVD ++Y + + Sbjct: 245 YHGGLEGLLDGLGAD-----------GVLKLLVEGGADVAGRFHRAGLVDRYVVYLAPAL 293 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 +G PL G +RR F V +E +G +L L Sbjct: 294 LGGEDG-RPLMAGPGAPTMADLRRGRF---VAVEVLGDDLRL 331 >gi|85710330|ref|ZP_01041395.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1] gi|85689040|gb|EAQ29044.1| riboflavin-specific deaminase/reductase [Erythrobacter sp. NAP1] Length = 315 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 154/337 (45%), Gaps = 47/337 (13%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEARGATAYVTLEPCSHYG-R 84 NP VA L+V+ VI RG T GG PHAE AL A A+GAT YVTLEPC+H R Sbjct: 17 PNPGVAALLVQGNCVIARGWTQGGGRPHAEAIALAGIAEGGAKGATLYVTLEPCAHQSQR 76 Query: 85 SPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTR 144 P C +I RVV+ DPD R +G G + + + GI V + + + L YLTR Sbjct: 77 GPACTDLVIAARPSRVVIGQLDPDPRTAGLGAKRIQRAGIAVTVLDDDVARASLAGYLTR 136 Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R H+TLK+A+S D I +A S ITG ++ VH RAQ DAILVG GT AD Sbjct: 137 AALGRPHVTLKLAMSLDGAIALASGASQWITGEAARAHVHSRRAQHDAILVGGGTWRADK 196 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 P L RL GL+ SP R++L Sbjct: 197 PRLDVRLPGLEARSPDRVLLTRG--------------------------------VAPDG 224 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + +I I GV L VEGGA A SF+ +VD + +YR+ I+IG G Sbjct: 225 VTVINEPA-------QIAALDGVQYLYVEGGAGAAASFLAEDMVDELHIYRAPILIGS-G 276 Query: 325 IPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIG 356 +P+ + G + GSD Y+ Sbjct: 277 LPALSDIGLASLADAHGRWRHCESRQLGSDTFTSYLR 313 >gi|326426566|gb|EGD72136.1| riboflavin biosynthesis protein RibA [Salpingoeca sp. ATCC 50818] Length = 1091 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 106/479 (22%), Positives = 172/479 (35%), Gaps = 137/479 (28%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA 63 ++ D FM AL +R NP V C++V+DG VIG G G PHAE++A+ +A Sbjct: 577 AAVDELFMRRALSLARLGRVSAPPNPWVGCVLVRDGHVIGEGYHRRAGMPHAEIEAMADA 636 Query: 64 GEEA-----------------------------------RGATAYVTLEPCSHYGRSPPC 88 A RG + E S ++P Sbjct: 637 VLRAGIDIMEHGGAAAALADTPFAAFANTAAAQTHRLLQRGKSKRAASEAKSTTAKTPSA 696 Query: 89 AQFIIECGIRRVV--------------------------------------VCVDDPDVR 110 G+ V + V DPD R Sbjct: 697 CTLTTATGVVEAVRAVLAGATAYVTLEPCHHQGRTGPCDQALVQAGVARTVIAVTDPDER 756 Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 VS RGL +L +G+ + + +E + L YL ++ R +K A+S D + Sbjct: 757 VSARGLAFLRSRGVEVATGVCGAEAEALLAPYLHQRRTGRPLCVIKTAISIDGRVACKDA 816 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN----------------G 213 S ITG +++ + H +RA+S A+L GIGT LAD+P L RL Sbjct: 817 TSKWITGPLARARAHKMRAESQAVLCGIGTALADNPTLNVRLALASLPPGERAAFAPAMH 876 Query: 214 LQEHSP----------------MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 SP +R++LD +L + +++ T++ ++ + + Sbjct: 877 AASPSPVTVAGAGAHFGRGMPLVRVVLDARGRL-FEGRLLDTSIAPTIVYTSRDCSAQAL 935 Query: 258 LAFRKKNINIIYCDC--------------------------RDLKKLLTILVGRGVTSLL 291 + + + D DL ++L L RGV +L Sbjct: 936 KTWAAHGVEAVVVDTACASGYAGACRGVDTRVGGDAAAPVLLDLMQVLRDLAKRGVLQVL 995 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYF 346 VEGGA V SF+ L D + ++ ++G +P +E + + VR + F Sbjct: 996 VEGGAQVHSSFVQQGLGDQLAVFVGPKLLGGTAVPWLPDELASTMAHARTYSLVRVETF 1054 >gi|289675578|ref|ZP_06496468.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. syringae FF5] Length = 194 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 84/187 (44%), Positives = 114/187 (60%), Gaps = 1/187 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV++G ++G G A G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA +IE G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ESE + +L R ++ +K+A+S D MA S ITG +++ Sbjct: 125 GISVQCGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARS 184 Query: 182 QVHLLRA 188 V LRA Sbjct: 185 AVQRLRA 191 >gi|297627300|ref|YP_003689063.1| riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296923065|emb|CBL57649.1| Riboflavin-specific deaminase (diaminohydroxyphosphoribosylaminopyrimidine deaminase) (5-amino-6-(5-phosphoribosylamino)uracil reductase) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 406 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 108/364 (29%), Positives = 166/364 (45%), Gaps = 44/364 (12%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE---AGEEA 67 A S NP V C+++ DG VI G G HAE AL G + Sbjct: 68 RRAFELSARG-PADDPNPRVGCVLLAPDGGVIAEGWHRGAGTAHAEAAALAAARAVGSDV 126 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 RGATA V+LEPC+H+GR+ PCA + + GI RVV V DP+ +G Q L ++G+ ++ Sbjct: 127 RGATAVVSLEPCAHWGRTGPCAVALADAGITRVVFSVPDPNPVAAGGT-QVLRERGVEVI 185 Query: 127 DRMMESEGKIFLHAYLTRQVEK-------RSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 + E+ G+ L +L RQV R + +K+A + D + A S ITG + Sbjct: 186 GGVAEASGREALGDWLARQVAPLPGEVGARPQVLVKMAATLDGRVAAADGTSRWITGPAA 245 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKII 237 ++ H RA+ AI+VG GT+LADDP LT RL L +H P+R+++ + D+ + Sbjct: 246 RDHAHGTRARVGAIVVGTGTLLADDPALTARLPDGSLADHQPLRVVMGTRP-VPDDAAV- 303 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAA 297 R ++ D ++L L RGV +L+EGG Sbjct: 304 -----------------------RGPGGALLALRTHDPAEVLRELSSRGVREVLIEGGPT 340 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSP---LEEGYLEKNFMCVRRDYFGSDVCLEY 354 +A +F+ + L D + Y S ++G G + F V G D+ + Sbjct: 341 IASAFLAAGLADELHAYISPALLGAGAQAVSGLGISTITSALRFHIVDVHRLGDDLLVVA 400 Query: 355 IGKN 358 ++ Sbjct: 401 RPRS 404 >gi|300781124|ref|ZP_07090978.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium ATCC 33030] gi|300532831|gb|EFK53892.1| riboflavin biosynthesis protein RibD [Corynebacterium genitalium ATCC 33030] Length = 361 Score = 222 bits (565), Expect = 9e-56, Method: Composition-based stats. Identities = 97/342 (28%), Positives = 142/342 (41%), Gaps = 53/342 (15%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--------VKD-----GIVIGRGVTA 48 + + + AL G TS NP V C+I V D +I G T Sbjct: 7 TFTEQEETALWEALDAGAEVRGTTSPNPPVGCVIYREVEPVIVDDWDQAEPEIIATGGTE 66 Query: 49 YGGCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 G HAE+ AL+ A E+ RGA VTLEPC+H GR+ PCA+ I+ GI +VV Sbjct: 67 PAGGRHAEIVALDAAREKVGDDGLRGACMLVTLEPCNHTGRTGPCAEAIVAAGIAKVVYI 126 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 DP+ + G ++L + G+ V L +LT R +T K A + D Sbjct: 127 EPDPNPE-ASGGAEYLRRHGVEVHHKTYD--VTGLAPWLTAVRHGRVSVTAKFAATLDGF 183 Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMR 221 + S ITG I++ VH R++ DAI++G GT LAD+P LT R L E P R Sbjct: 184 VAAPDGSSQWITGPITREWVHEDRSRVDAIIIGTGTALADNPSLTARKADGSLAERQPRR 243 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 +++ + + A ++ L Sbjct: 244 VVVGTREVPEGNLTRLGFERYAT------------------------------PQEALDA 273 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L G ++VEGG + S +VD+I Y + ++ G G Sbjct: 274 LWETGARHVIVEGGPTLMRSVFELGVVDAIHAYVAPMLFGAG 315 >gi|163841087|ref|YP_001625492.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC 33209] gi|162954563|gb|ABY24078.1| riboflavin biosynthesis protein [Renibacterium salmoninarum ATCC 33209] Length = 369 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 103/363 (28%), Positives = 161/363 (44%), Gaps = 41/363 (11%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63 + D M AL + G+ NP V +I+ DG ++ G A G PHAE AL + Sbjct: 2 NHDEA-MDLALATAIK--GIRGANPLVGAVILGADGELLAAGHHAGAGTPHAEALALAQL 58 Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 ++ GAT TLEPCSH GR+P C+Q II+ GI VV DDPD +G + + Sbjct: 59 EPSQSAGATLVCTLEPCSHVGRTPACSQAIIDAGITTVVYAADDPDQNAAGGAARLRAAG 118 Query: 123 GIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 ++ + +EG + + R + ++ I + D I S I+ S Sbjct: 119 ITVISDVRAAEGHELNRRWFAAVRDSRPYTSVHIMQTIDGRIAAVDGSSQWISCPESLAA 178 Query: 183 VHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTA 240 H R ++ A+LVG GT+LAD+P LT R Q P+R+ L + ++ D+ I Sbjct: 179 KHARRTRAHAMLVGTGTILADNPRLTARDPDGQLFARQPLRVAL-GNREVPADAAI---- 233 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + + + D K L +GV L+VEGGA V Sbjct: 234 ---------------------RGDGRWLQVKDHDALKAGRTLRAQGVDHLIVEGGAQVTA 272 Query: 301 SFINSRLVDSIILYRSQIVIGEG-------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 +F+ + LVD +I+ + V+G G G+ + + + + V + GSD+ L Sbjct: 273 AFLRADLVDELIVSIAPTVLGSGITAIGDIGVLTLADARHFGWDPAAVPIRH-GSDLTLT 331 Query: 354 YIG 356 +I Sbjct: 332 FIP 334 >gi|163784632|ref|ZP_02179466.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159880100|gb|EDP73770.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 279 Score = 219 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 85/276 (30%), Positives = 137/276 (49%), Gaps = 12/276 (4%) Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVE 147 IIE I++VVV DP+ V+G+G++ L + G+ ++ ++E + K + E Sbjct: 1 TNAIIENKIKKVVVATLDPNPLVAGKGIKLLEEHGVEVITGVLEDKAKKLNEDFFVYIKE 60 Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR I LK A + D I S ITG ++ H LR ++ A+LVG+GTVL D+P+L Sbjct: 61 KRPFIHLKWAQTIDGKIATFTGSSKWITGEKARKYAHKLRKEASAVLVGVGTVLKDNPQL 120 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF-RKKNIN 266 T R + + P+R+++D + K +D KI + ++ V +N D +K+NI Sbjct: 121 TVR-HIKTDKQPVRVLIDKNLKTPIDYKIFDETVK-TIVFVGKNADKEKIKNLSKKENIE 178 Query: 267 IIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 II +LK +L L R + +LVEGG + FI L D I ++ + ++GE Sbjct: 179 IIKLPLDKGKFELKDILNELYKRDIIHILVEGGKEIITQFIKENLFDKISVFIAPKIVGE 238 Query: 323 GGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEY 354 GI S +E+ R DV +E+ Sbjct: 239 EGISSVGKLHIEDINSSIKLNKKRIKSLEEDVLIEF 274 >gi|255071909|ref|XP_002499629.1| predicted protein [Micromonas sp. RCC299] gi|226514891|gb|ACO60887.1| predicted protein [Micromonas sp. RCC299] Length = 639 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 87/381 (22%), Positives = 140/381 (36%), Gaps = 36/381 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 + D + A S GL +P C+++ G V+ R G +EV A+ Sbjct: 26 TFTDDDLAHVLCAAELSHGSDGLVQPHPRSGCVLLDSAGAVVARTFQMGQGGVRSEVLAV 85 Query: 61 EEAGEEARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 EAG A G AY+ LEP ++ + RVVV + P V G+ + L Sbjct: 86 REAGARADGGVAYLNLEPAHGPAVGEDAAVDALVRSRVSRVVVGILHPVAGVRGQAVAAL 145 Query: 120 SQKGIIVDRMME---------------------SEGKIFLHAYLTRQVEKRSHITLKIAV 158 G+ VD + E + + L R R K A+ Sbjct: 146 RDAGVRVDVLGEFTSRFTSAADERAASAVAEGIARCRDANRHLLHRVATGRPFSIFKYAM 205 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218 + D I S +TG ++ QV RA+SDA++VG TV D+P LT R +G H Sbjct: 206 TVDGKIATTSGHSAWVTGPAARQQVWAERARSDAVVVGGTTVRRDNPNLTTRRDG--GHR 263 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P RI+ + + T +++ R + ++ D + Sbjct: 264 PARIVRVRKPRT----NLWNTDEANTIVMTVAGARREFQAELRALGVEVVEFDELTPGAV 319 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG--IPSPLEEGYLEK 336 RG L E G +A + + ++ + + ++G G PSP+ E LE+ Sbjct: 320 ADYCAKRGYLQLFWECGGGLAGPALTDGVFHHVMAFVAPKIVGSSGGPAPSPVGETGLER 379 Query: 337 N-----FMCVRRDYFGSDVCL 352 + G DV + Sbjct: 380 MTDALALRGLGIRKHGRDVLI 400 >gi|145637248|ref|ZP_01792909.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittHH] gi|145269500|gb|EDK09442.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae PittHH] Length = 274 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 77/276 (27%), Positives = 129/276 (46%), Gaps = 20/276 (7%) Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKI 156 +V+ + DP+ +V+G+GL+ LS GI ++ + + +L R + + LK+ Sbjct: 1 MKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKGFLKRMRQGMPFVQLKL 60 Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216 A+S D MA S ITG +++ V +RA+S A+L TV+ADDP L R + E Sbjct: 61 AMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSTTVIADDPSLNVRWDEFPE 120 Query: 217 -----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 P+R+ILD ++ K+ T +PV +V+ + F Sbjct: 121 NLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLT--HSPVWLVSSETRDLT--GFPDFCE 176 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 II LK+L+ L R + +L VE GA +A S I+++LVD +I+Y + ++G+ Sbjct: 177 QIILPKENLLKELMRELGKRQINTLWVEAGANLAGSLIDAKLVDELIIYIAPKLLGDNAR 236 Query: 326 P----SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 L + + + G D+ L Y K Sbjct: 237 GLCQLPNLTKLADAPLWQLNELEQIGDDIKLTYTPK 272 >gi|302831894|ref|XP_002947512.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f. nagariensis] gi|300267376|gb|EFJ51560.1| hypothetical protein VOLCADRAFT_57231 [Volvox carteri f. nagariensis] Length = 547 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 91/349 (26%), Positives = 143/349 (40%), Gaps = 15/349 (4%) Query: 23 GLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81 G+T +P++AC++V DG I G AEV A+ AG ARGATAY+ LE Sbjct: 1 GVTQPHPNMACILVGPDGSKISEAYQRAQGTTSAEVLAVTAAGGAARGATAYLNLESGDC 60 Query: 82 YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS-------QKGIIVDRMMESEG 134 +G ++ G+ RVVV + P + R + L S Sbjct: 61 HGEM-AAVDALVRGGVSRVVVGLRHPLRHLRSRAIGMLRAGSFDGDDATSAAAYGAMSAC 119 Query: 135 KIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAIL 194 A L R V +R LK A++ D I S ++ S+ V +RA+SDA++ Sbjct: 120 LAANEALLHRSVLRRPLGVLKYAMTLDGKIATNIGHSSWVSSPQSRGLVFEMRARSDAVI 179 Query: 195 VGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 VG TV D+P LT R G H+P RI++ L D+ + L +++ Sbjct: 180 VGGNTVRRDNPRLTTRREG--GHTPARIVMSRTLDLPEDANLWDVTLAPTIVLTQRGART 237 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A R + ++ D + + RG E G +A I S +V ++ + Sbjct: 238 RFQAALRSAGVEVVEFDFLTPESVADYCQERGFLQCFWECGGTLAAPTIASGVVHKVMAF 297 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 + +IG P+P+ E + V SD +G +L + Sbjct: 298 VAPKIIGGVRAPTPVGELGFVEMTQAVEL----SDTSWSQVGPDLMMTG 342 >gi|46204084|ref|ZP_00209252.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis [Magnetospirillum magnetotacticum MS-1] Length = 320 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 155/334 (46%), Gaps = 49/334 (14%) Query: 42 IGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 + G G PHAE AL +A G + GATA VTLEPC+H GR+ PCA ++ G+ Sbjct: 2 LAEGWHRGAGTPHAEAAALADARARGVDVAGATAVVTLEPCAHTGRTGPCADALVAAGVA 61 Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 VV+ VDDP+ V+ G L G+ +V + +EG+ L +LT ++TLK A Sbjct: 62 EVVLAVDDPNP-VATGGAHRLRAAGVRVVRGLRAAEGEELLRVWLTAVRRGTPYVTLKTA 120 Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG---- 213 + D + S ITG ++ H +RA+ DAI+VG GT+LADDPELT R+ G Sbjct: 121 TTLDGYVAAQDGTSRWITGPAAREHAHRVRAEVDAIVVGTGTLLADDPELTARVRGHGPS 180 Query: 214 ------------LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 L EH P+R+++ + +++ R Sbjct: 181 HDAAHDAASAARLAEHQPLRVVVGLRG-IPPAARV------------------------R 215 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + +++ RD+ ++L L R V +LVEGG +A +F+ + VD + Y + +++G Sbjct: 216 GEGSELVHVLTRDVGEVLERLAEREVRHVLVEGGPTLATAFLAAGAVDELHAYVAPVLLG 275 Query: 322 EGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 G + F V G D + Sbjct: 276 NGRRAVDGLGVATIADAHRFRTVEVRRVGDDALV 309 >gi|325963044|ref|YP_004240950.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter phenanthrenivorans Sphe3] gi|323469131|gb|ADX72816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase [Arthrobacter phenanthrenivorans Sphe3] Length = 386 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 156/348 (44%), Gaps = 36/348 (10%) Query: 22 VGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77 G NP V ++V G + G G HAE A+ +A G + G T VTLE Sbjct: 41 RGPRGANPLVGAVVVDPGGRPLVTGFHRGAGTAHAEADAIAQAAAAGLDLTGCTMVVTLE 100 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PC+H GR+ PCA II GI VV VDDP +G G L + G+ + + +E Sbjct: 101 PCNHVGRTGPCAAAIIAAGITDVVYAVDDPHDPAAG-GATTLREAGVRVRSGLGATESLD 159 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + KR +TL IA + D+ I S I+ S H +R + DAILVG Sbjct: 160 LNRQWFEAVAAKRPFVTLHIAQTLDSRIAAEDGTSQWISSPESLADNHAIRGRIDAILVG 219 Query: 197 IGTVLADDPELTCRLN--GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 TVL D+P LT R L P+R ++ + D+ + Sbjct: 220 TQTVLVDNPRLTAREPSGELASKQPVRAVMGMR-DIPADAAV------------------ 260 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 ++ +++ RD ++ L+IL G+ L+VEGG+ + +F+ + LVD +I+Y Sbjct: 261 ------HGRDGRVVHLPTRDPREALSILYAHGIRHLMVEGGSRILSAFLAAELVDELIVY 314 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD-VCLEYIGKNLCL 361 + ++G G P+ L + D+ SD + +G++L L Sbjct: 315 LAPTLLGS-GTPA-LTGLGITTLADAQHWDWDPSDGGSVRTLGQDLRL 360 >gi|108804202|ref|YP_644139.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Rubrobacter xylanophilus DSM 9941] gi|108765445|gb|ABG04327.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rubrobacter xylanophilus DSM 9941] Length = 369 Score = 213 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 118/360 (32%), Positives = 174/360 (48%), Gaps = 16/360 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A + + NP V ++V+ G V+G G G HAE AL AG ARGA Sbjct: 1 MDLARELAERGRYTAAPNPLVGAVVVRGGAVVGEGWHVRPGEEHAEAMALRRAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 T YVTLEPC+H+ R+P PCA+ ++ GIRR+VV DP+ RV+GR L+ L + G+ V+ Sbjct: 61 TMYVTLEPCNHHLRTPGPPCAEAVLRAGIRRLVVGHADPNPRVNGRSLRRLREAGVEVEV 120 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + + R + LK+AV+ D I AG S +TG ++ + H LRA Sbjct: 121 LDDPVFERQNERFFWAMRRGRPFVHLKLAVTLDGRIAAAGGDSRWVTGPEARRRAHALRA 180 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSP--MRIILDPHFKLSLDSKIIKTALLAPVI 246 ++ A+LVG GT ADDP LT R GL E P +R +LDP L S+++ TA P++ Sbjct: 181 EAGAVLVGAGTARADDPLLTPR--GLDEEPPRVLRAVLDPRLTLPEASRLVSTAPEWPLV 238 Query: 247 IVT-ENDDPVLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + E P + DL +L L RG + +LVEGG A Sbjct: 239 VFCAEGASPRRRRRLEAAGAEVEAVPAAGDGGLDLGAVLERLRLRGASGVLVEGGGQTAR 298 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 F+ LV+ + L+ + + G G+P + F + G D+ + Sbjct: 299 RFVAGGLVNKMTLFYAPRLAGADGVPMVGGLRVTRMAQAPRFSVAGVERLGDDLAVTLYP 358 >gi|288926889|ref|ZP_06420789.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17] gi|288336328|gb|EFC74709.1| riboflavin biosynthesis protein RibD [Prevotella buccae D17] Length = 286 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 85/264 (32%), Positives = 123/264 (46%), Gaps = 9/264 (3%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +FM L+ +R NP V +IV DG +IG G G HAEV A Sbjct: 26 DEKFMRRCLQLARNGRQNAKPNPMVGAVIVSPDGRIIGEGYHVRCGEGHAEVNAFASVRP 85 Query: 66 EARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E +T YV+LEPCSH+G++PPCA I+ G+RRVV DP VSGRG++ + + Sbjct: 86 EDEALLHESTIYVSLEPCSHFGKTPPCADLIVRKGVRRVVCGCIDPFAEVSGRGVERIRK 145 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI + ++E E ++ R +ITLK A + D + ++PI+ +K Sbjct: 146 AGIEVTVGVLEQECLTLNRRFIVCNERDRPYITLKWAQTADGFLDDH-GRALPISSPFTK 204 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LRA++DAILVG T + P L R P RI+L ++ + Sbjct: 205 MLSHKLRAENDAILVGRVTEEREHPRLDVR--EWSGPDPERIVLGHGASVTGILARLYEE 262 Query: 241 LLAPVIIVTENDDPVLALAFRKKN 264 +I+ DP + R Sbjct: 263 KKQSLIVEGGGTDPTVVSRCRPLG 286 >gi|126640314|ref|YP_001083298.1| hypothetical protein A1S_0221 [Acinetobacter baumannii ATCC 17978] Length = 288 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 86/292 (29%), Positives = 142/292 (48%), Gaps = 18/292 (6%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 +TLEPC+HYGR+PPCA+ +++ +++VVV DP+ V+G+G+Q L GI + + E Sbjct: 1 MTLEPCAHYGRTPPCAEALVKAQVKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICED 60 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 +L ++ LK+A S D MA S ITG ++ V RA S A Sbjct: 61 LAAQLNQGFLKAMSTGMPYVRLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGA 120 Query: 193 ILVGIGTVLADDPELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 ++ GI TV+ DD +L R ++ P R+ILD +L L +KI++ ++V Sbjct: 121 VITGIDTVIVDDCQLNVRSLHNIDIETVAQPKRVILDRRGRLPLTAKILEN---PETVMV 177 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRL 307 LA ++ +I + + LK LL L + + +LVE GA ++ +F+ L Sbjct: 178 MGPYRQELA------DLGVIQLEIQPLKTLLQTLSKQYQIYDVLVEAGATLSTAFLQEGL 231 Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 VD +I Y + ++G+ + E + F + D+ L I Sbjct: 232 VDEMISYVAPTLLGQSARAMFNADFEYMAQQLRFKLLDVTQLDQDIRLRLIP 283 >gi|115446113|ref|NP_001046836.1| Os02g0473000 [Oryza sativa Japonica Group] gi|113536367|dbj|BAF08750.1| Os02g0473000 [Oryza sativa Japonica Group] Length = 490 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 70/294 (23%), Positives = 128/294 (43%), Gaps = 18/294 (6%) Query: 79 CSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-- 136 YG S + +++ GI RVVV + P + G+ +Q L +GI VD + E Sbjct: 1 GDCYGDSTAVST-LVQAGITRVVVGLRHPLKHLRGKAIQSLRNEGIQVDVVGEDLHSKLF 59 Query: 137 ---------FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 L R + LK A++ D I + + ++G S+ +V LR Sbjct: 60 KEALKSCLIVNAPLLYRAAFRVPFSVLKYAMTADGKIAASSGHASWVSGKSSRGRVFELR 119 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +SDAI+VG TV DDP LT R ++ H P+RI++ L ++ + ++ Sbjct: 120 GRSDAIIVGGNTVRLDDPRLTAR--HVKGHVPVRIVMSQSLNLPEEANLWNVHDAYTIVA 177 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 L K + ++ D + + +++ RG S+L E G +A S I++ + Sbjct: 178 TQRGARRDLQKKLALKGVEVVEFDMLNPRDVMSYCYDRGYLSVLWECGGTLAASAISASV 237 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + + + + +IG P+P+ E + + + DV E I +++ + Sbjct: 238 IHKVYAFLAPKIIGGVNAPTPVGELGMNQMTQAIDLI----DVSYEQIDRDMLM 287 >gi|160937911|ref|ZP_02085269.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC BAA-613] gi|158439137|gb|EDP16891.1| hypothetical protein CLOBOL_02805 [Clostridium bolteae ATCC BAA-613] Length = 262 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 72/263 (27%), Positives = 119/263 (45%), Gaps = 13/263 (4%) Query: 111 VSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 VSG+G + L GI + + ++E E + H + R + +K A++ D Sbjct: 2 VSGKGTKILVANGIEVTEGILEEECRELNHVFFHYIKTGRPLVIMKYAMTLDGKTATFAG 61 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ITG ++ +VH R++ A++ G+ T+LADD LTCRL +P+RII D + Sbjct: 62 HSRWITGERARRRVHEDRSRYSAVMCGVETILADDSLLTCRLPDT--RNPVRIICDSQLR 119 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGR 285 DS++ T A I+ T D L + +K I+ R DL L L Sbjct: 120 TPPDSQVAATCSQARTILATCCPDREAWLPYEEKGCEILLLPPREGRVDLNALTERLGQM 179 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM-----C 340 G+ S+L+EGG+ + S +N +V+ + Y S + G +P+ +E + Sbjct: 180 GIDSVLLEGGSTLNWSALNQGIVNRVQAYISPGLFGGATAKTPVGGRGVEFPYQGFSLGK 239 Query: 341 VRRDYFGSDVCLEYIGKNLCLQE 363 + D+ +E C QE Sbjct: 240 TKITVLDQDILIEGELM-PCSQE 261 >gi|256372450|ref|YP_003110274.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans DSM 10331] gi|256009034|gb|ACU54601.1| riboflavin biosynthesis protein RibD [Acidimicrobium ferrooxidans DSM 10331] Length = 350 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 113/334 (33%), Positives = 157/334 (47%), Gaps = 42/334 (12%) Query: 27 TNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSP 86 NP V +I +DG+V+G G TA+ G PHAEV AL AG ARGA VTLEPC+H+GR+P Sbjct: 21 PNPWVGAVIERDGVVVGVGRTAHPGGPHAEVAALAAAGALARGAQMSVTLEPCAHHGRTP 80 Query: 87 PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV---DRMMESEGKIFLHAYLT 143 PC IIE G+ RV V + DPD RV GRG+Q L G+ V R M + L YL+ Sbjct: 81 PCVDAIIEAGVARVEVGLIDPDPRVRGRGIQALQAAGVEVRLAPRAMRARLADDLAPYLS 140 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 ++ R + KIA S D + S IT ++ H LRA+ DAI+VG GT D Sbjct: 141 HRLRGRPFVVGKIACSLDGAVADRWGQSKWITQEAARELGHRLRAEVDAIIVGRGTFERD 200 Query: 204 DPELTCRLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 P+LT R G L P+R++ LD P V ++ P LA Sbjct: 201 RPQLTARPGGRLARRQPVRVVASRR---PLD---------VPEGFVVASESPGALLAAGA 248 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 RG +LVEGG + +++ LVD +++ + I++G+ Sbjct: 249 A---------------------RGWVEVLVEGGPTLLGAYLAEGLVDELLVAIAPILLGD 287 Query: 323 GGIPSPLEEGYLEKNFMCVR-----RDYFGSDVC 351 ++ G +R G D+ Sbjct: 288 EHARHAVDLGEGRLLEDAIRGAWRAHRRVGEDLV 321 >gi|6572094|emb|CAB63087.1| riboflavin-specific deaminase [Bartonella clarridgeiae] Length = 227 Score = 208 bits (531), Expect = 9e-52, Method: Composition-based stats. Identities = 79/222 (35%), Positives = 130/222 (58%), Gaps = 7/222 (3%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R +TLK+A+S DN +G G ++ I+G IS +Q H+LRAQ+D I+VGIGT+LADDP+L Sbjct: 6 QRCEVTLKMAISADNGVGKKGQSNLKISGEISHSQTHILRAQNDVIMVGIGTILADDPKL 65 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN--DDPVLALAFRKKNI 265 CRL GL+ SP+R+ILD + ++ LD+K+++TA P ++ +A + + Sbjct: 66 DCRLPGLEMRSPIRVILDKNLRIPLDAKVVQTAANIPTWVICGTVLSKKRKKIALEQYGV 125 Query: 266 NIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + + +L +L R + S+L+EGGA F+N+ VD +I + + I++G Sbjct: 126 TVCSVEVTNNLIPPLAILRLLYQRKINSVLLEGGAKTGEIFLNASCVDRLICFYAPIILG 185 Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQE 363 + I +P E YL + F + G+D ++ K LC Q Sbjct: 186 KDRIEAPHFESYLSE-FNKIEMRMLGNDRLYKWRRKILCSQG 226 >gi|255325997|ref|ZP_05367085.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC 25296] gi|255296888|gb|EET76217.1| riboflavin biosynthesis protein RibD [Rothia mucilaginosa ATCC 25296] Length = 436 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 102/368 (27%), Positives = 162/368 (44%), Gaps = 40/368 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63 A M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A Sbjct: 61 AEAMTLALQAAR--QGIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GA YV+LEPC+H GR+ PC+ + E GI + D D + G +L +G Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGINELYYAYSD-DTENAAGGAAYLRSQG 177 Query: 124 IIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + V M E + + + E+R IT K A + D I A S ITG ++ Sbjct: 178 VTVHAMEEFANASYLLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 HL+R ++DA+++G T L DDP L R + E P+R+++ +++ + ++ Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVM-GKTEITENYRVRGL 296 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V DP N + D ++LL L RGV L++EGG + Sbjct: 297 NPPEGV-----EADPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----------IPSPLEEGYLEKNFMCVRRDYFGS 348 F L+D ++ YR+ +++G+G +P + F VR G+ Sbjct: 342 GLFAGEDLIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRV--LGN 399 Query: 349 DVCLEYIG 356 D + Sbjct: 400 DTATHLVP 407 >gi|283458202|ref|YP_003362820.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa DY-18] gi|283134235|dbj|BAI65000.1| pyrimidine reductase, riboflavin biosynthesis [Rothia mucilaginosa DY-18] Length = 436 Score = 208 bits (529), Expect = 2e-51, Method: Composition-based stats. Identities = 101/368 (27%), Positives = 160/368 (43%), Gaps = 40/368 (10%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA--- 63 A M+ AL+ +R G+ NP V +I G ++ G G PHAE AL A Sbjct: 61 AEAMTLALQAAR--QGIRGANPLVGAVITDAHGHLLHVGYHRGAGTPHAEADALAAARAA 118 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 G + GA YV+LEPC+H GR+ PC+ + E GI + D D + G +L +G Sbjct: 119 GTDLTGARMYVSLEPCNHTGRTGPCSHAVAEAGISELYYAYSD-DTENAAGGAAYLRSQG 177 Query: 124 IIVDRMME--SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + V M E + + E+R IT K A + D I A S ITG ++ Sbjct: 178 VTVHAMEEFANASYQLNERWFIAAAERRPFITAKSASTLDGFIAAADGTSKWITGPAARI 237 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKT 239 HL+R ++DA+++G T L DDP L R + E P+R+++ +++ + ++ Sbjct: 238 DGHLIRHRADAVMIGTRTTLMDDPTLDARDANGERFEKQPLRVVM-GKTEITENYRVRGL 296 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 V DP N + D ++LL L RGV L++EGG + Sbjct: 297 NPPEGV-----EADPQ----------NFLQVFTHDPRELLDELYARGVRHLMIEGGPGMV 341 Query: 300 HSFINSRLVDSIILYRSQIVIGEGG-----------IPSPLEEGYLEKNFMCVRRDYFGS 348 F +D ++ YR+ +++G+G +P + F VR G+ Sbjct: 342 GLFAGEDFIDEMVWYRAPMIMGQGKSAVYRLLVDTLAQAPRLQLDDLGMFPAVRV--LGN 399 Query: 349 DVCLEYIG 356 D + Sbjct: 400 DTATHLVP 407 >gi|148555358|ref|YP_001262940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingomonas wittichii RW1] gi|148500548|gb|ABQ68802.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sphingomonas wittichii RW1] Length = 313 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 125/352 (35%), Positives = 168/352 (47%), Gaps = 46/352 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M +A+ + G T+ NP+V C+IV+DG VIGRG T GG PHAE A+E AG+ A GA Sbjct: 1 MLSAVALAGRGRGRTAPNPNVGCVIVRDGRVIGRGWTGAGGRPHAEAIAIEAAGDLA-GA 59 Query: 71 TAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDR 128 T YVTLEPC+H R P CA I+ RVV+ + DPD R GRG+ ++ GI + Sbjct: 60 TLYVTLEPCAHVSARGPACADLIVAAKPARVVIALRDPDPRTDGRGIARITAAGIAVATG 119 Query: 129 MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + + +LTR+ + R H+TLK+A S D I + S ITG ++ HL RA Sbjct: 120 VEAEAARASMAGFLTRRSKGRPHVTLKLATSLDGRIALPDRSSRWITGPAARAHAHLERA 179 Query: 189 QSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 + + ILVG GT+ AD P L RL GL+E SP R +L Sbjct: 180 RHEMILVGRGTLEADSPGLDVRLPGLEERSPRRAVLGH---------------------- 217 Query: 249 TENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLV 308 P A R D D+ L GV L VEGGA A +F+ + LV Sbjct: 218 --GAAPEGWTALR---------DPADIAGL------DGVDHLFVEGGAGAAAAFLAADLV 260 Query: 309 DSIILYRSQIVIGEG----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 D ++LY + IV+G G G + + G D Y Sbjct: 261 DRLLLYTAPIVVGAGRSAIGDIGLADLAAAHDRWRLADTRTLGIDRLCVYER 312 >gi|219557312|ref|ZP_03536388.1| putative bifunctional riboflavin biosynthesis protein RIBG: diaminohydroxyphosphoribosylaminopyrimidine deaminase + [Mycobacterium tuberculosis T17] Length = 237 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 120/235 (51%), Gaps = 8/235 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T NP V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPNPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYG++PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLATGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KGIIVDRMMESEGKI--FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G+ V + +E L +L +Q H+T K A S D A S I+ + Sbjct: 124 AGLQVRSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSL 232 + +H RA +DAILVG GTVLADDP LT RL L P+R+++ + Sbjct: 184 RLDLHRRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPP 237 >gi|302769374|ref|XP_002968106.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii] gi|300163750|gb|EFJ30360.1| hypothetical protein SELMODRAFT_169709 [Selaginella moellendorffii] Length = 375 Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 172/363 (47%), Gaps = 30/363 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64 D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG Sbjct: 24 DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 83 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+ Sbjct: 84 SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 143 Query: 125 IVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E E A+ R V K+ L+ A++ D + P T + Sbjct: 144 EVTVGVEEELCRVTNEAFFHRIVTKKPFACLRYAMTIDGCLLA-----DPSTPVAASFYS 198 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDSKII 237 L + DA++ ++ AD P L G P+R++ + LS L +++ Sbjct: 199 QQL-EEYDAVVTTEASLDAD-PVLLSAEQGA--KQPLRVVAVTSSSSLSQLAGLLSARVF 254 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GG 295 T LAP +++ + + + R+KN+ ++ + DL +L + RG S+L++ G Sbjct: 255 DT-KLAPTLLLGGKGESMETV-LRRKNVEVVPVNEVDLDSVLDLCYQRGACSVLLDSTAG 312 Query: 296 AAVAH---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 + + + ++ + + + G + + G +V Sbjct: 313 FDMLGVKEALEDEDRAVIQKLCVVVAPFAGGGQTQKV----ASSMRKLGRLTTRKCGENV 368 Query: 351 CLE 353 ++ Sbjct: 369 VIQ 371 >gi|83717489|ref|YP_439477.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|257142602|ref|ZP_05590864.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] gi|83651314|gb|ABC35378.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis E264] Length = 389 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 152/365 (41%), Gaps = 34/365 (9%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL Sbjct: 3 TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQTLGAGWHRRAGEPHAEVHALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 63 EAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLAD 122 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG--FI 178 GI+V+ ++E++ + + +R R +++ D + Sbjct: 123 AGIVVEQGLLEAQARELNIGFFSRIERGRPWTRATLSLPIDGPPAPDSADLAALDAAPSE 182 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKII- 237 +++ + RA+S +L A D R G +P ++ + + Sbjct: 183 ARDDLRHWRARSSVVL-----ERAPD---AGRAVGRDGAAPRYVVSARDCAALGAASVAC 234 Query: 238 KTALLAPVIIVTEND----------------DPVLALAFRKKNINIIYCD-CRDLKKLLT 280 A AP + + +D D A + + D C L Sbjct: 235 APADGAPTLALHRDDKGGRACEDACGSGHRADRADARPAGAPSAPVADTDACLPLPDAFA 294 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L +GV L VE A+ + + L D ++LY +P+ +L Sbjct: 295 RLAKQGVNELFVEADLALCDALFGADLADELLLYAHP-----ASRDAPVSASWLAAAIDD 349 Query: 341 VRRDY 345 V R + Sbjct: 350 VARRW 354 >gi|184200815|ref|YP_001855022.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Kocuria rhizophila DC2201] gi|183581045|dbj|BAG29516.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Kocuria rhizophila DC2201] Length = 434 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 151/397 (38%), Gaps = 64/397 (16%) Query: 28 NPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYG 83 NP V ++ G ++ G G PHAEV L++A G+T VTLEPC H G Sbjct: 32 NPVVGAALLGPTGQLLHVGHHRGAGTPHAEVDVLQQARAARTPLEGSTLVVTLEPCHHTG 91 Query: 84 RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLT 143 R+ PC + G+ RVV + DP G G S + ++ E + +L Sbjct: 92 RTGPCTAAVEAAGVPRVVYALADPTAEARGGGAALRSHGVHVRAGLLADEARELNERWLR 151 Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 + + R ++LKIA S D + A S ITG ++ + H LR + DAILVG GT+ D Sbjct: 152 AREQARPFVSLKIAQSLDGRVAAADGTSQWITGLPARAEGHALRTRVDAILVGGGTLRGD 211 Query: 204 DPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKII---------------------KTA 240 DP LT R P+R ++ + +++I Sbjct: 212 DPALTARDAEGAPCARQPLRAVMSTRP-VPPEARIRVGTAHDFTAADTAARSPVPGTDAG 270 Query: 241 LLAPVIIVTENDDPVLALAF-----------------------------------RKKNI 265 AP A + Sbjct: 271 SAAPTWGAATETSAQAPDAETSMPGPGAGSPSLAPRPDAVTATPAASAPATSGPAEGLDG 330 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 ++ D ++ LT L G +LVEGG VA +F+ + LVD + L+++ +++G+G Sbjct: 331 RFVHLSTHDPREALTRLRDLGAAHVLVEGGPTVAAAFLAADLVDELWLHQAPLLLGDGAA 390 Query: 326 PSPLEEGYLEKNFMCVRRDYFG-SDVCLEYIGKNLCL 361 R D G D + +G++L Sbjct: 391 SVGALGIGTLAAASSWRGDPVGVQDGPVAAVGEDLRW 427 >gi|215693340|dbj|BAG88722.1| unnamed protein product [Oryza sativa Japonica Group] Length = 404 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 160/325 (49%), Gaps = 24/325 (7%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +A Sbjct: 84 DDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAR 143 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 144 DLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGI 203 Query: 125 IVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKN 181 V ME E + AY+ + ++ TL+ +S + ++ G G+ G+ S Sbjct: 204 DVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYS-- 261 Query: 182 QVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ GI + P T G P+ II+ L+ + ++ Sbjct: 262 ---QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQLNIQFLREE 314 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLV---EGG-- 295 + +++T D PV + + ++ D L+ +L IL RG+ S+LV E G Sbjct: 315 CASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCSVLVDFREAGGD 369 Query: 296 -AAVAHSFINSRLVDSIILYRSQIV 319 A + +F +LV +++ I Sbjct: 370 FAYLLKNFQEEKLVQKVVVELLPIW 394 >gi|218888179|ref|YP_002437500.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759133|gb|ACL10032.1| riboflavin biosynthesis protein RibD [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 419 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 101/413 (24%), Positives = 163/413 (39%), Gaps = 65/413 (15%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 FM A+ +R + NP+V ++V+DG V+ RG G PHAEV+ L +A G Sbjct: 8 EIFMREAIALARRGRWRAAPNPTVGAVLVRDGQVVARGYHTACGMPHAEVECLRDAAANG 67 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + T VTLEPC+H+G++PPC+Q ++ GIR VVV + DP+ V+ G ++L Q G+ Sbjct: 68 VDPAACTLMVTLEPCNHHGKTPPCSQAVLAAGIRHVVVGMADPNP-VARGGAEFLRQHGV 126 Query: 125 IVDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 VD + + L ++T + ++ LK+A + D I S I+ S+ +V Sbjct: 127 RVDMGVCEQDCRDLVADFVTWKKTDLPYVILKLASTLDGRIATRAGHSQWISCAASRRRV 186 Query: 184 HLLR----AQSDAILVGIGTVLADDPELTCR--------------------LNGLQEHSP 219 H +R A+LVG GT+ AD+P LT R P Sbjct: 187 HAIRAGAGHAGGAVLVGGGTLFADNPLLTARCGDFSDAFPAAPQGGCAGIDEADAPRRQP 246 Query: 220 MRIILDPHFKLSL----DSKIIKTALLAPVIIVTENDDPV-LALAFRKKNINIIYCD--- 271 + + + D +++ + TE A R + + Sbjct: 247 LAVAVTSRMDEVAARAGDLALLQQRAADTIFWTTETAAASPAADTVRAMGVRVWGLPAAS 306 Query: 272 --------------------CRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDS 310 DL+ L L G +L EGG + + + + LV Sbjct: 307 AAHEHGETGKPGETGATSAVGLDLRAGLARLRAEAGCLYVLCEGGGQLGLALLEAGLVHE 366 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKN------FMCVRRDYFGSDVCLEYIGK 357 L+ + V+G+ PL +G G D+ + K Sbjct: 367 FELHLAPKVLGDNAA-RPLFDGRAPLRMDDALGLRVADTAPSGDDIIVTLRQK 418 >gi|302773850|ref|XP_002970342.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii] gi|300161858|gb|EFJ28472.1| hypothetical protein SELMODRAFT_171495 [Selaginella moellendorffii] Length = 378 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 171/363 (47%), Gaps = 30/363 (8%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAG 64 D+ +M + +R +G TS NP V CLIV + G ++GRG G PHAEV AL EAG Sbjct: 27 DDSDYMRQCVELARRGLGRTSPNPMVGCLIVDNAGEIVGRGFHPRAGEPHAEVFALREAG 86 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +A G+TAYV+LEPC H GR+PPC++ ++ +RRVVV DP+ V+G+G++ L + G+ Sbjct: 87 SKAHGSTAYVSLEPCDHVGRTPPCSRALVAARVRRVVVGTVDPNPLVAGKGVERLRRAGV 146 Query: 125 IVDRMMESEGKI-FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V +E E A+ R V K+ L+ A++ D + P T + Sbjct: 147 EVTVGVEEELCRVTNEAFFHRMVTKKPFTCLRYAMTIDGCLLA-----DPSTPVAASFYS 201 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII-LDPHFKLS-----LDSKII 237 L + DA++ ++ AD P L G P+R++ + LS L +++ Sbjct: 202 QQL-EEYDAVVTTEASLDAD-PVLLSAEQGA--KQPLRVVAVTSSSSLSKLAGLLSARVF 257 Query: 238 KTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE--GG 295 T LAP +++ + + + R+KN+ ++ + DL +L + RG S+L++ G Sbjct: 258 DT-KLAPTLLLGGKGESIETV-LRRKNVEVVPVNEVDLDSVLDLCNQRGACSVLLDSTAG 315 Query: 296 AAVAH---SFINSR--LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 + + + ++ + + G + + G +V Sbjct: 316 FDMLGVKEALEDEDRAVIQKLCVVVGPFAGGGQSQKI----ASSMRKLGRLTTRKCGENV 371 Query: 351 CLE 353 ++ Sbjct: 372 VIQ 374 >gi|301055608|ref|YP_003793819.1| riboflavin biosynthesis protein contains C-terminal domain of RibD [Bacillus anthracis CI] gi|300377777|gb|ADK06681.1| riboflavin biosynthesis protein contains C-terminal domain of RibD [Bacillus cereus biovar anthracis str. CI] Length = 216 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 64/217 (29%), Positives = 98/217 (45%), Gaps = 11/217 (5%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 +S D S ITG ++ VH R DAILVG+ TV+AD+P LT R+ Sbjct: 1 MSLDGKTATVTGESKWITGEEARADVHQYRHTHDAILVGVNTVIADNPHLTTRIPNG-GK 59 Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DL 275 P+R+ILD H + S +I L IIV + + ++ KNI I + ++ Sbjct: 60 HPIRVILDTHLRTPPSSHVITDGLAPTWIIVGTDVNQEKIASYESKNIAIFQMKTKQIEI 119 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 + +L +L + + SL VEGG V SF+ ++ + I+ Y S +IG P+ Sbjct: 120 QDVLHLLGEKQILSLFVEGGQTVHASFLQTKYFNEIVTYISPKLIGGSKAPTLFGGNGFS 179 Query: 336 K-----NFMCVRRDYFGSDVCLEYIGKN---LCLQEL 364 + G D+ + +N CLQEL Sbjct: 180 TLQDALSLEIQEMKQIGDDIKIVAHARNEVTKCLQEL 216 >gi|296109936|ref|YP_003616885.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus infernus ME] gi|295434750|gb|ADG13921.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus infernus ME] Length = 214 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 9/211 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +S D + G S I+ +VH LRA+ DAI+VGIGTVL DDP LT Sbjct: 3 PYVISNVGMSLDGKLVTVGGDSR-ISCEEDLIRVHKLRAKVDAIMVGIGTVLKDDPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 E +P+RI++D ++ L+++++ +I TE + A + +I Sbjct: 62 H-KIKSEKNPIRIVVDSSLRIPLNARVLNKE-AKTIIATTEKANKEKIKALENLGVEVIV 119 Query: 270 C--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 C + DLKKL+ IL +G+ S+L+EGG + S LVD + +Y + ++ G + Sbjct: 120 CGKERVDLKKLMEILYEKGIRSILLEGGGTLNWSMFKEGLVDEVSVYIAPMIFGGKSVSY 179 Query: 328 PLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 EG+ + G + LE+ Sbjct: 180 VDGEGFKSVDEAVKLKLKNFYKLGEGIVLEF 210 >gi|254673573|emb|CBA09063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Neisseria meningitidis alpha275] Length = 267 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 77/265 (29%), Positives = 122/265 (46%), Gaps = 13/265 (4%) Query: 104 VDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + DP+ V+G+GL L GI + ++E + + +L+R +R + LK AVS D Sbjct: 1 MRDPNPLVAGKGLALLEVAGIKTECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDG 60 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRI 222 ++ S ITG ++ V +LRA+S A+L GIGTVLAD+P L R P RI Sbjct: 61 KTALSDGSSFWITGEDARADVQVLRAESCAVLTGIGTVLADNPRLNVR-AFPTLRQPARI 119 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR------DLK 276 +LD +L +S ++ T +P I T + +R+ I DL Sbjct: 120 VLDSRLRLPPNSHLV-TDGQSPTYIATLERNEDRLHPYREHAHVRILMPSETADSKIDLH 178 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY--- 333 L+ +L G ++VE G+ + +F+ L D I+LYRS ++G G L E Sbjct: 179 HLMRLLADEGFGEIMVEAGSELTSAFLAENLADEIVLYRSPKILGSGKDLFSLLENRAAL 238 Query: 334 -LEKNFMCVRRDYFGSDVCLEYIGK 357 + V + G D+ + Sbjct: 239 SAPPLWTPVSSEILGHDIKTVFRKN 263 >gi|318081273|ref|ZP_07988605.1| putative riboflavin/cytosine deaminase [Streptomyces sp. SA3_actF] Length = 254 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 83/201 (41%), Positives = 105/201 (52%), Gaps = 3/201 (1%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 A+ + +G T NP V C+++ G V G G G PHAE+ AL AGE ARG Sbjct: 11 REAIALAARGLGRTRPNPVVGCVVLDASGEVAGSGWHQRAGGPHAEIHALRAAGERARGG 70 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TA VTLEPC H GR+ PC++ +IE G+RRVV V DP + G L G+ + + Sbjct: 71 TALVTLEPCDHTGRTGPCSRALIEAGVRRVVHAVADP-TDQATGGADTLRAAGVDVEHGL 129 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 +E E A+LT R H+T K A S D A S IT ++ VH LRA Sbjct: 130 LEREAADVNAAWLTAARLGRPHVTWKYAASLDGRTAAADGTSRWITSPEARADVHRLRAT 189 Query: 190 SDAILVGIGTVLADDPELTCR 210 DA+LVG GT DDP L R Sbjct: 190 CDAVLVGSGTARTDDPHLAVR 210 >gi|325685005|gb|EGD27144.1| riboflavin biosynthesis protein RibD [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 280 Score = 197 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 89/289 (30%), Positives = 140/289 (48%), Gaps = 12/289 (4%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMES 132 +TLEPC HYG+ PPC Q II+ GI+RVVV DP V+G+G+ L Q G+ + ++ Sbjct: 1 MTLEPCCHYGKQPPCTQLIIDSGIKRVVVGATDPHSLVTGKGIAALRQAGLEVSTGLLAK 60 Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E Y ++TLK A++ D+M+ ITG + +VH RA A Sbjct: 61 EASQLNDHYNYFYQTGLPYVTLKQAMTLDHMLAKK-GERTAITGAEAWTRVHQERAGYQA 119 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL--SLDSKIIKTALLAPVIIVTE 250 +L+G+ T + DDP L + + H P+R++LD +L LD ++ A I+TE Sbjct: 120 VLIGLETAIIDDPLLLTSEDLV--HPPVRVVLDRRGRLLEHLDLRLFSD-KRAETWILTE 176 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 N P K + I + + IL +GV S+ EGGA + S + + LV+ Sbjct: 177 N--PAFLEQDMPKQVKIFALPDGKISTSIKILADQGVQSVYAEGGAHLQESLLAAGLVND 234 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 +I Y + +G G + E + V+ + G DV + K++ Sbjct: 235 VISYVAPSFLGRGTEAAVAAEAL---DLKDVQTEQVGDDVRIYGRIKDV 280 >gi|169836055|ref|ZP_02869243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [candidate division TM7 single-cell isolate TM7a] Length = 277 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 13/277 (4%) Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSH 151 ++ G++R V+ DP+ +V+G+G+Q L GI + + +++SE + + K + Sbjct: 1 MKMGLKRCVIGSSDPNPKVAGKGVQILRNAGIEVRENVLKSECDKINQVFFKYIMTKIPY 60 Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + LK A++ D I S IT ++ +V L R + I+VGI TVLAD+P LT R+ Sbjct: 61 LFLKCAITLDGKIATKTGNSKWITNETAREKVQLYRNKFMGIMVGINTVLADNPSLTARV 120 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---RKKNINII 268 +P RII+DPHFK + IIK IIVT ++ + + Sbjct: 121 E--NGVNPYRIIIDPHFKTGKNHNIIKENSDEKTIIVTSKNNENSEKQLDFSENSKVKFV 178 Query: 269 YCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + + K++L + G+ S+L+EGG ++ ++D+ ++ + ++G+ Sbjct: 179 FLNGTKFSFKEILCKIGQIGIDSILLEGGQSLISQAFEENVIDAGEIFIANKILGDEKGK 238 Query: 327 SPLEEGYLEKN-----FMCVRRDYFGSDVCLEYIGKN 358 S + EK V+ + +G +V +E+ KN Sbjct: 239 SFIVGFDREKMDEAVILKNVKYNVYGENVGMEFWQKN 275 >gi|257483265|ref|ZP_05637306.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 167 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 73/163 (44%), Positives = 100/163 (61%), Gaps = 1/163 (0%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV AL + Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQ 64 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPCSH GR+PPCA ++ G+ RVV + DP+ VSGRGL L Sbjct: 65 AGELARGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNA 124 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 GI + ++ESE + +L R + +I +K+A+S D Sbjct: 125 GIGVQCGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRT 167 >gi|227488843|ref|ZP_03919159.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51867] gi|227091265|gb|EEI26577.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium glucuronolyticum ATCC 51867] Length = 277 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 132/313 (42%), Gaps = 42/313 (13%) Query: 58 QALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AL AGE+ARGATAYVTLEPC+H GR+ PC+ ++E GI VV D + G Sbjct: 1 MALRAAGEDARGATAYVTLEPCNHTGRTGPCSHALVEAGIATVVYLTPDTSTPEAAGGGD 60 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 +L G+ V+ + + G + + R R T+K+A + D S ITG Sbjct: 61 YLKSHGVEVEYLPVAVGALTPWLFAQRNH--RPMFTVKVAHTIDGYAAALDGTSQWITGE 118 Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSK 235 ++ H R++ DAILVG GT LAD+P LT R L E+ P +I+ + D Sbjct: 119 TARAYAHRDRSRRDAILVGTGTALADNPSLTARREDGSLYENQPDKIVFGSRP-VPRDYH 177 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGG 295 + +T I D L LV +LVEGG Sbjct: 178 LYETG--------------------------FIQVDT------LEELVQLPYNDILVEGG 205 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVC 351 V + + LVD+I Y + V+G GIP K F G DV Sbjct: 206 PGVLSTLFTNDLVDTIHSYVASAVLGA-GIPLISTGWGTSIQDIKRFSRTDTINLGDDVL 264 Query: 352 LEYIGKNLCLQEL 364 + CLQ L Sbjct: 265 IVLERHGSCLQGL 277 >gi|15668852|ref|NP_247655.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanocaldococcus jannaschii DSM 2661] gi|2493563|sp|Q58085|RIB7_METJA RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1591385|gb|AAB98665.1| riboflavin-specific deaminase (ribG) [Methanocaldococcus jannaschii DSM 2661] Length = 224 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 15/224 (6%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + +EK+ +I + ++ D + S I+ +VH +RA D I+VGIGTVL Sbjct: 1 MVMVMEKKPYIISNVGMTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVL 59 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLA 257 DDP LT + +P+RI++D ++ L+++++ A II T D Sbjct: 60 KDDPRLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDTNEEKEKKI 116 Query: 258 LAFRKKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + ++ C DLKKL+ IL +G+ S+L+EGG + LVD + +Y Sbjct: 117 KILEDMGVEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYI 176 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 + + G P+ ++ + CV+ + G + LE+ Sbjct: 177 APKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 220 >gi|260551097|ref|ZP_05825301.1| pyrimidine deaminase [Acinetobacter sp. RUH2624] gi|260405864|gb|EEW99352.1| pyrimidine deaminase [Acinetobacter sp. RUH2624] Length = 286 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 75/272 (27%), Positives = 124/272 (45%), Gaps = 18/272 (6%) Query: 94 ECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHI 152 + +++VVV DP+ V+G+G+Q L GI + + E +L ++ Sbjct: 19 KHRLKKVVVACPDPNPLVAGKGVQILKNAGIEVEIGICEDLAAKLNQGFLKAMSTGMPYV 78 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-- 210 LK+A S D MA S ITG ++ V RA S A++ GI TV+ADD +L R Sbjct: 79 RLKVASSLDGRTAMASGESKWITGSAARQDVQHWRAISGAVITGIDTVIADDCQLNVRSL 138 Query: 211 --LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 L+ P R+ILD +L L +KI++ ++V LA ++ +I Sbjct: 139 HNLDIETVAQPKRVILDRRGRLPLTAKILEN---PETVMVMGPYRQELA------DLGVI 189 Query: 269 YCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP- 326 + + LK LL L + + +LVE GA ++ +F+ LVD +I Y + ++G+ Sbjct: 190 QLEIQPLKTLLQALSKQYQIYDVLVEAGATLSTAFLQEGLVDEMISYVAPTLLGQSARAM 249 Query: 327 --SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + E + F + D+ L I Sbjct: 250 FNADFEYMAQQLRFKLLDVIQLDQDIRLRLIP 281 >gi|289192977|ref|YP_003458918.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus sp. FS406-22] gi|288939427|gb|ADC70182.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus sp. FS406-22] Length = 220 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 103/220 (46%), Gaps = 15/220 (6%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +EK+ ++ + ++ D + S I+ +VH +RA D I+VGIGTVL D+P Sbjct: 1 MEKKPYVISNVGMTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDNP 59 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FR 261 LT + +P+RI++D ++ L+++++ A II T D Sbjct: 60 RLTVH-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDGDEEKEKKIKILE 116 Query: 262 KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 I ++ C DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + Sbjct: 117 DMGIEVVKCGRGKVDLKKLMEILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKI 176 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 G P+ ++ + CV+ + G + LE+ Sbjct: 177 FGGKDTPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 216 >gi|261403330|ref|YP_003247554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus vulcanius M7] gi|261370323|gb|ACX73072.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus vulcanius M7] Length = 219 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 105/216 (48%), Gaps = 15/216 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + ++ D + S I+ +VH +RA+ D I+VGIGTVL DDP LT Sbjct: 3 PYVISNVGITLDGKLATVNNDSR-ISCEEDLIRVHKIRAKVDGIMVGIGTVLKDDPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265 + +P+RI++D ++ L+++++ + A II T D +++ I Sbjct: 62 H-KIKSDRNPVRIVVDSKLRVPLNARVLNSD--AKTIIATTEDLDEEKQKKIKILKERGI 118 Query: 266 NIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +I+ C + DL+KL+ +L +G+ ++L+EGG + LVD + +Y + + G Sbjct: 119 DIVMCGEEKVDLRKLMNVLYKKGIKTILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGK 178 Query: 324 GIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 P+ ++ + V+ + G + LE+ Sbjct: 179 NAPTYVDGEGFKSEEESVKLELKNFYRLGEGIVLEF 214 >gi|256810581|ref|YP_003127950.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus fervens AG86] gi|256793781|gb|ACV24450.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanocaldococcus fervens AG86] Length = 219 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 15/219 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 K+ ++ + ++ D + S I+ +VH +RA D I+VGIGTVL DDP Sbjct: 1 MKKPYVISNVGMTLDGKLATVNNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA----FRK 262 LT + +P+RI++D ++ L+++++ A II T D ++ Sbjct: 60 LTIH-KIKSDKNPVRIVVDSKLRIPLNARVLN--KDAKTIIATTEDTDEEKEKKINILKE 116 Query: 263 KNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++++ C DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + Sbjct: 117 MGVDVVKCGKGRVDLKKLMEILYNKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIF 176 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 G P+ ++ + CV+ + G + LE+ Sbjct: 177 GGKEAPTYVDGKGFKTADECVKLELKNFYRLGEGIVLEF 215 >gi|300934515|ref|ZP_07149771.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Corynebacterium resistens DSM 45100] Length = 320 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 154/333 (46%), Gaps = 44/333 (13%) Query: 38 DGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 DG V GRG T G HAE+ AL+EAG ARG A VTLEPC+H GR+ PC Q ++ GI Sbjct: 6 DGEVAGRGATEPAGGRHAEIVALDEAGTRARGGRAIVTLEPCNHTGRTGPCTQALLAAGI 65 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHA--------YLTRQVEKR 149 RV DP ++ G L+ G+ V +L KR Sbjct: 66 VRVDYLFADPF-ELASGGANSLASAGVEVHGPYLPHPSQAAPWTPVQGVEAWLRGVKNKR 124 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ LK+A + D + + S ITG ++ H RAQ DAILVG GTV ADDP+LT Sbjct: 125 PYVILKLAATMDGRVAASDGSSQWITGAAARGHAHARRAQVDAILVGTGTVEADDPKLTA 184 Query: 210 RLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 R + Q E P+R+++ + + D+ +++ Sbjct: 185 RDDSGQPLPKELQPLRVVM-GNRSIPEDAAVMQQPGET---------------------- 221 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 D+ ++L L RGV ++LVEGG +VA +F+N+ +VD I Y + V+G G Sbjct: 222 --FLARSHDVHQVLAQLHSRGVVTVLVEGGPSVAAAFMNAGVVDEINYYCAPAVLGAGFN 279 Query: 326 P---SPLEEGYL---EKNFMCVRRDYFGSDVCL 352 S LE G + F G+D+C Sbjct: 280 AMDGSTLEMGRTIQDLQRFRPREIQILGNDICW 312 >gi|76819539|ref|YP_335244.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] gi|76584012|gb|ABA53486.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710b] Length = 454 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 63 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 122 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 123 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 182 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 183 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 242 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 243 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 294 Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------L 275 P + + +D+ A D D L Sbjct: 295 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPL 354 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 L +GV LLV+ A+ + S L D ++LY +P+ L Sbjct: 355 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 409 Query: 336 KNFMCVRRDY 345 V R + Sbjct: 410 AAIDDVARRW 419 >gi|312136821|ref|YP_004004158.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase [Methanothermus fervidus DSM 2088] gi|311224540|gb|ADP77396.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanothermus fervidus DSM 2088] Length = 227 Score = 192 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 11/226 (4%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L +L R ++ L A++ D I S I+G +VH LR + D I+VG Sbjct: 1 MLEKFLILGDHLRPYVILNAAMTLDGKIATKTYDSK-ISGEEDLIRVHKLRKECDGIMVG 59 Query: 197 IGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 I TV+ DDP LT +N +P+R+I D + L+++++ AP +I Sbjct: 60 INTVIIDDPRLTVHKINSKPSDNPVRVIADSRARTPLNARVLNNE--APTVIAVSEKAKN 117 Query: 256 LALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 + KK ++ + DL L+ L G+ L++EGG+ + S ++ LVD + + Sbjct: 118 EKVEKLKKRAKVLVLGKERVDLVALMEKLKDMGINKLMLEGGSTLNFSMLSKGLVDEVRV 177 Query: 314 YRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 + +++G + ++ EK ++ G D+ LEY Sbjct: 178 CVAPMIVGGKDAKTLVDGPGFEKMDEAIKLKLKKYYTLGKDLILEY 223 >gi|289705541|ref|ZP_06501933.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58] gi|289557770|gb|EFD51069.1| riboflavin biosynthesis protein RibD [Micrococcus luteus SK58] Length = 377 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 95/365 (26%), Positives = 148/365 (40%), Gaps = 42/365 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEE------- 62 M A+R + G+ NP V ++ + G V+ G G HAEV AL Sbjct: 12 MDLAVRAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALTRWRAARAA 69 Query: 63 ----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A + G T +VTLEPC H G + PC+Q +++ GI + V DP G + Sbjct: 70 DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAGIGALRYAVADPTGHDGGGAARL 129 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + + E+ + + R +T +A S D A S ITG Sbjct: 130 AAHGVRVTGPTGEAAALALSARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSRWITGPD 189 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236 S+ H +R++ DAI+VG GTVLADDP LT R E H P+ ++ + D Sbjct: 190 SRLHAHEVRSRVDAIVVGTGTVLADDPRLTARDAAGAELAHQPVPVV--QGHRPVPDGVA 247 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 ++ PV++ + DP LA + GR +L+EGG Sbjct: 248 LR---RHPVVLEVPDHDPHAVLAALAAHPGPWP-------------HGRRAEHVLIEGGP 291 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGIP-SPLEEGYLEKNFMCVR-------RDYFGS 348 V +++ + LVD +++Y + +++G G + L L + G Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPGRAAVAGLGVATLSEGLRWHSDPAEGGPVRVLGD 351 Query: 349 DVCLE 353 DV Sbjct: 352 DVWTH 356 >gi|329850574|ref|ZP_08265419.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] gi|328840889|gb|EGF90460.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] Length = 215 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 75/210 (35%), Positives = 106/210 (50%), Gaps = 5/210 (2%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TLK+A + D I A S ITG ++ VH LRA DA+LVGI T L DDPELT Sbjct: 3 PQVTLKLATTLDGRIATASGESRWITGEEARRCVHELRAGHDAVLVGIETALKDDPELTV 62 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL+G + + P R++LD +L L +K+++TA + P +VT + LA + K I + Sbjct: 63 RLHGYEGYQPTRVVLDSKGRLPLHAKMVQTARIIPTYVVTTGELSGEMLAAQVKAIKVPS 122 Query: 270 -CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327 DL L L G+ L VEGG VA +F+ + VD + +RS ++G G P Sbjct: 123 KHQRVDLDAALAALSKVGIERLFVEGGGVVATAFLRAGYVDRLEWFRSSTILGGDGRPVI 182 Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 LE F + G D+ Y Sbjct: 183 GHLNLESLDQMFRFTRLGVQAVGDDLWESY 212 >gi|53722153|ref|YP_111138.1| riboflavin biosynthesis protein [Burkholderia pseudomallei K96243] gi|134283488|ref|ZP_01770188.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|217418752|ref|ZP_03450259.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|237509799|ref|ZP_04522514.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|254190205|ref|ZP_04896714.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|254263160|ref|ZP_04954025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] gi|52212567|emb|CAH38593.1| putative riboflavin biosynthesis protein [Burkholderia pseudomallei K96243] gi|134245237|gb|EBA45331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 305] gi|157937882|gb|EDO93552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pasteur 52237] gi|217398056|gb|EEC38071.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 576] gi|235002004|gb|EEP51428.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei MSHR346] gi|254214162|gb|EET03547.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1710a] Length = 395 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 95/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235 Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------L 275 P + + +D+ A D D L Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPL 295 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 L +GV LLV+ A+ + S L D ++LY +P+ L Sbjct: 296 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 350 Query: 336 KNFMCVRRDY 345 V R + Sbjct: 351 AAIDDVARRW 360 >gi|152990173|ref|YP_001355895.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2] gi|151422034|dbj|BAF69538.1| riboflavin biosynthesis protein RibG [Nitratiruptor sp. SB155-2] Length = 333 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 81/344 (23%), Positives = 138/344 (40%), Gaps = 69/344 (20%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE- 61 + ++D FM AL+ + + GLT NP+V ++ + +I +G G PHAEV+A++ Sbjct: 1 MVNYDNFFMDIALQEAWRYQGLTYPNPAVGAVVAINNCIISKGAHTKAGAPHAEVEAIKN 60 Query: 62 --------------------------EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 A + AT YVTLEPC+H+G++PPC+ I + Sbjct: 61 AYYTLTGDEHVLHLQDALELHEYLVANAKDLFHNATIYVTLEPCNHFGKTPPCSLLIKKL 120 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 G +RVV+ + DP+ + G +L GI VD ++ E L + T Sbjct: 121 GFQRVVIALKDPN-EEAAGGASFLRNCGIEVDIGIQEERAKVL----IEPFLQWRSSTFT 175 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 G+ G I+G S+ VH LR + + +++G TV D P L R+ G Sbjct: 176 FFKLAQAFNGVIDGGI--ISGAESRKYVHALRDRIELLVIGGNTVRTDRPILDARMVG-- 231 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 +P +I + + + + V E+ D + A Sbjct: 232 GKAPDILIYSRKKEFDTTIPLFQIPNRK--VFVEESLDRIKA------------------ 271 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +++EGG + + LVD + + + I+ Sbjct: 272 -----------YRYVMIEGGEGMLEA--TKDLVDWYLFFVAPIL 302 >gi|150401090|ref|YP_001324856.1| hypothetical protein Maeo_0660 [Methanococcus aeolicus Nankai-3] gi|150013793|gb|ABR56244.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus aeolicus Nankai-3] Length = 247 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 61/221 (27%), Positives = 105/221 (47%), Gaps = 15/221 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + +S D + S I+G +VH +R D I+VGIGTVL DDP LT Sbjct: 28 PFVISNVGMSLDGKLATIENDSR-ISGEDDLKRVHKIRKSVDGIMVGIGTVLKDDPRLTV 86 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-----VLALAFRKK 263 +N +E +P+RI++D + ++ L+++++ +I TEN KK Sbjct: 87 HKINAKKEDNPIRIVVDSNLRIPLNARVLNDD-ATTIIATTENMGENKNINEKIRELAKK 145 Query: 264 NINII--YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 NI II D DL KL+ +L +G+ ++L+EGG + + LVD + +Y + + G Sbjct: 146 NIIIIKTGIDKVDLVKLMELLYKKGIKNILLEGGGTLNWGMFENNLVDEVRVYIAPKIFG 205 Query: 322 EGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGK 357 G P+ ++ + C++ + +EY K Sbjct: 206 GKGAPTFVDGDGFKTVDECIKLALKNCYKLDDGIVIEYTVK 246 >gi|126457369|ref|YP_001075539.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|242313881|ref|ZP_04812898.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] gi|126231137|gb|ABN94550.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106a] gi|242137120|gb|EES23523.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 1106b] Length = 395 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 96/370 (25%), Positives = 148/370 (40%), Gaps = 40/370 (10%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235 Query: 240 ALLA-PVIIVTEND-------------------DPVLALAFRKKNINIIYCDCRD----L 275 P + + +D D V R D L Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASAPDTDAGLPL 295 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 L +GV LLV+ A+ + S L D ++LY +P+ L Sbjct: 296 PDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLA 350 Query: 336 KNFMCVRRDY 345 V R + Sbjct: 351 AAIDDVARRW 360 >gi|167906520|ref|ZP_02493725.1| riboflavin biosynthesis protein [Burkholderia pseudomallei NCTC 13177] Length = 397 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 147/372 (39%), Gaps = 42/372 (11%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235 Query: 240 ALLA-PVIIVTENDDPVLALAF-RKKNINIIYCDCRD----------------------- 274 P + + +D+ A D D Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGTGHRARRVDRVDHADARPAGAPSASASAPDTDAGL 295 Query: 275 -LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGY 333 L L +GV LLV+ A+ + S L D ++LY +P+ Sbjct: 296 PLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASR 350 Query: 334 LEKNFMCVRRDY 345 V R + Sbjct: 351 FAAAIDNVARRW 362 >gi|294670266|ref|ZP_06735159.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308003|gb|EFE49246.1| riboflavin biosynthesis protein RibD [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 260 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 6/220 (2%) Query: 111 VSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 ++G+GL LS GI + ++E+E + +L+R R + LK A S D ++ Sbjct: 1 MAGKGLSMLSAAGIRTESGLLETEARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDG 60 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 S ITG +++ V +LRA+S A+L GIGTVLADDP+L R P+RI+LD + Sbjct: 61 LSQWITGEAARHDVQILRAESCAVLTGIGTVLADDPQLNVR-AFPTLRQPLRIVLDSRLR 119 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGR 285 L +K++ +++ + A +++I+ D L +LT+L R Sbjct: 120 LPPTTKLLADPASPVLLLTAVPPEKYPAALTAVPHLDILTVPAADGRISLPAVLTLLAER 179 Query: 286 GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 G+ LLVE GA + +F+ + L D I+LY++ ++G Sbjct: 180 GIGELLVEAGATLCGAFLQAGLADEIVLYQAGKILGGDAR 219 >gi|254193400|ref|ZP_04899834.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] gi|169650153|gb|EDS82846.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei S13] Length = 398 Score = 189 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 95/373 (25%), Positives = 148/373 (39%), Gaps = 43/373 (11%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 184 RDDLRHWRARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235 Query: 240 ALLA-PVIIVTENDDPVLALAF----------------------RKKNINIIYCDCRD-- 274 P + + +D+ A R D Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDHADARPAGAPSASAPDTDAG 295 Query: 275 --LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 L L +GV LLV+ A+ + S L D ++LY +P+ Sbjct: 296 LPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSAS 350 Query: 333 YLEKNFMCVRRDY 345 L V R + Sbjct: 351 RLAAAIDDVARRW 363 >gi|325959850|ref|YP_004291316.1| Riboflavin-specific deaminase domain-containing protein [Methanobacterium sp. AL-21] gi|325331282|gb|ADZ10344.1| Riboflavin-specific deaminase domain protein [Methanobacterium sp. AL-21] Length = 226 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 9/216 (4%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 ++ + L A++ D I S I+G +VH LR + DAI+VGI TVLADDP Sbjct: 5 NYEKPYTILNSAMTLDGKIATKTGSS-EISGQEDLVRVHELRMEVDAIMVGINTVLADDP 63 Query: 206 ELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK- 263 LT + + +P+RI++D + L+ +I+ + ++ VT+ DPV ++ Sbjct: 64 RLTVHKIPSSKSDNPLRIVVDSRARTPLNFRILNSD-AKTLLAVTQAADPVKVNKLKQLV 122 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ + DLK L+ L G+ +L++EGG+ + +S ++ LVD + + + +V G Sbjct: 123 DVVVCGEKHVDLKNLMKHLYELGIKTLMLEGGSTLNYSMLSEGLVDEVRVCIAPMVAGGK 182 Query: 324 GIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354 + + ++ V+ ++ G D+ +EY Sbjct: 183 YAKTLADGDGFDEMKDSVKLEFKKSYTLGDDLIVEY 218 >gi|218514099|ref|ZP_03510939.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli 8C-3] Length = 179 Score = 189 bits (480), Expect = 7e-46, Method: Composition-based stats. Identities = 107/179 (59%), Positives = 133/179 (74%), Gaps = 1/179 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIVKDG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRQHLGRTATNPSVGCLIVKDGVIVGQAVTALGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 GI VD ++E+EG+ L YLTRQ + R ++TLK+AVS D MIG G G V ITG Sbjct: 121 DAGIEVDAGVLEAEGRRSLAGYLTRQTKNRPYVTLKLAVSADGMIGRQGEGQVAITGPE 179 >gi|126442868|ref|YP_001062584.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] gi|126222359|gb|ABN85864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 668] Length = 401 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 95/376 (25%), Positives = 148/376 (39%), Gaps = 46/376 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADA 123 Query: 123 GIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFIS 179 GI+V+ ++ ++ + + +R R + + D + A ++ + Sbjct: 124 GIVVEQGLLAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEA 183 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 ++ + RA+S +L A D R G +P ++ + Sbjct: 184 RDDLRHWRARSSVVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACA 235 Query: 240 ALLA-PVIIVTENDDPVLALAF-------------------------RKKNINIIYCDCR 273 P + + +D+ A R Sbjct: 236 PADGVPTLALHRDDNSASACEDAHGIGHRARRVDRVDRVDRVDHADARPAGAPSASASDT 295 Query: 274 D----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D L L +GV LLV+ A+ + S L D ++LY +P+ Sbjct: 296 DAGLPLPDAFARLARQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPV 350 Query: 330 EEGYLEKNFMCVRRDY 345 L V R + Sbjct: 351 SASRLAAAIDDVARRW 366 >gi|319957427|ref|YP_004168690.1| riboflavin biosynthesis protein ribd [Nitratifractor salsuginis DSM 16511] gi|319419831|gb|ADV46941.1| riboflavin biosynthesis protein RibD [Nitratifractor salsuginis DSM 16511] Length = 336 Score = 188 bits (477), Expect = 2e-45, Method: Composition-based stats. Identities = 93/378 (24%), Positives = 148/378 (39%), Gaps = 75/378 (19%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M AL + + GLT NP+V C +VK+G ++ G HAE+ A+ Sbjct: 1 MKIDDRFYMQLALGEAWRYQGLTYPNPAVGCCVVKEGRILAVEAHHKAGESHAELWAMLA 60 Query: 63 AGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIEC 95 A E RG + YVTLEPC+H+GR+P CA + Sbjct: 61 AYEALEGREAAVDSADADAVYDFLQTVPEELFRGVSLYVTLEPCAHHGRTPSCAWALSRF 120 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 + RVVV DP G GL+ L+ GI + + E E + L +L Q + Sbjct: 121 PLHRVVVATADPIPGHGG-GLEILADHGIEVATGVCEEEARELLEPFLIWQERAF--VLF 177 Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K+A + + I G ++ S VH LRA D +L+G TV D P L CR Sbjct: 178 KLAQTTNGRI-----GGGYLSSPESLEHVHRLRAVVDELLIGGSTVRTDRPTLDCRFVD- 231 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 Q+ +P I + + + + +T++ +P+L Sbjct: 232 QKRAPNVCIYSRQNEFDRSIPLFGVSDRQ--VRITDDIEPLLDRPSF------------- 276 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 LLVEGG + + +D ++LY++ + PL + Sbjct: 277 ---------------LLVEGGEGMLKAL--QDRIDWLLLYQTPKL-----SAHPLSYN-V 313 Query: 335 EKNFMCVRRDYFGSDVCL 352 ++ + G D+ L Sbjct: 314 DQKLKYLHHASIGVDLIL 331 >gi|261884015|ref|ZP_06008054.1| riboflavin biosynthesis protein (diaminohydroxyphosphoribosylaminopyrimidine deaminase [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 213 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 5/176 (2%) Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218 + D I S IT ++ VH+LR + AI+VG+ TV+AD+PELT R+ + Sbjct: 3 TLDGKIATYTGDSKWITSPEARYDVHVLRNEHMAIMVGVNTVVADNPELTTRIP--NGRN 60 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDL 275 P+RII+D ++ +DSK++ L +I + N D K + + D Sbjct: 61 PIRIIMDSTLRIPIDSKVVTDGLAETLIFTSVNYDVEKRKVLESKGVKVFPTTGTVHTDP 120 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE 331 + +L + ++S+L+EGG ++ +F+ +RLVD + Y + +IG P+ Sbjct: 121 HDVARLLGEQNISSVLIEGGGSIHSAFLENRLVDKGVHYFAPKLIGGQFAPTFFRG 176 >gi|315499926|ref|YP_004088729.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis excentricus CB 48] gi|315417938|gb|ADU14578.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Asticcacaulis excentricus CB 48] Length = 216 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 72/213 (33%), Positives = 103/213 (48%), Gaps = 5/213 (2%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R +TLK+A + D I S ITG ++ VH LRA DA+LVGI TVL DDPE Sbjct: 1 MIRPFVTLKLATTLDGRIATHTGESRWITGEPARRAVHELRASHDAVLVGIETVLKDDPE 60 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNI 265 LT RL G + + P R++LD ++ L SK+++TA + P +VT +D +P L + Sbjct: 61 LTVRLQGYEGYQPARVVLDTRGRIPLHSKLVQTARVIPTYVVTTHDLNPELVSLGVRPLK 120 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 DL L L G+ L VEGG +A +F+ VD + +R+ ++G G Sbjct: 121 VASRHQRVDLIAALEALNEAGIDRLFVEGGGQIATAFVKLGAVDRLEWFRAPTILGGDGR 180 Query: 326 PSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 + N F V G D+ Y Sbjct: 181 AVIGFLDIADINRVIRFTRVGVQAVGDDLWESY 213 >gi|254166543|ref|ZP_04873397.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|289596093|ref|YP_003482789.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Aciduliprofundum boonei T469] gi|197624153|gb|EDY36714.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|289533880|gb|ADD08227.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Aciduliprofundum boonei T469] Length = 217 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 68/218 (31%), Positives = 107/218 (49%), Gaps = 12/218 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+ Sbjct: 1 MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60 Query: 207 LTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT + +P+R++LD ++ +++++ +A II T + + L I Sbjct: 61 LTVKEKYVANAKNPVRVVLDSKLRIPKNARVLN--SIAKTIIATTENAKIRELN---AEI 115 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I D DLK LL L RG+ S++VEGG V SF+ LVD + ++ +VIG GG Sbjct: 116 VICGKDKVDLKCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIG-GGA 174 Query: 326 PSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKN 358 PS +E + + GS + L Y ++ Sbjct: 175 PSLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRD 212 >gi|114793489|pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793490|pdb|2AZN|B Chain B, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793491|pdb|2AZN|C Chain C, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793492|pdb|2AZN|D Chain D, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793493|pdb|2AZN|E Chain E, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase gi|114793494|pdb|2AZN|F Chain F, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)- Pyrimidinone 5-Phosphate Reductase Length = 219 Score = 185 bits (470), Expect = 9e-45, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 15/216 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +I + + D + S I+ +VH +RA D I VGIGTVL DDP LT Sbjct: 4 PYIISNVGXTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIXVGIGTVLKDDPRLTV 62 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----DPVLALAFRKKNI 265 + +P+RI++D ++ L+++++ A II T D + Sbjct: 63 H-KIKSDRNPVRIVVDSKLRVPLNARVLN--KDAKTIIATTEDTNEEKEKKIKILEDXGV 119 Query: 266 NIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ C DLKKL IL +G+ S+L+EGG + LVD + +Y + + G Sbjct: 120 EVVKCGRGKVDLKKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGK 179 Query: 324 GIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 P+ ++ + CV+ + G + LE+ Sbjct: 180 EAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 215 >gi|222628465|gb|EEE60597.1| hypothetical protein OsJ_13992 [Oryza sativa Japonica Group] Length = 739 Score = 184 bits (468), Expect = 2e-44, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 18/289 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +A Sbjct: 2 DDDGVYIRWCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAR 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G++ L GI Sbjct: 62 DLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGIERLQSAGI 121 Query: 125 IVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKN 181 V ME E + AY+ + ++ TL+ +S + ++ G G+ G+ S Sbjct: 122 DVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQPGGYYS-- 179 Query: 182 QVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 L + D +++ GI + P T G P+ II+ L+ + ++ Sbjct: 180 ---QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQLNIQFLREE 232 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + +++T D PV + + ++ D L+ +L IL RG+ Sbjct: 233 CASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCR 276 >gi|226200200|ref|ZP_03795745.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] gi|225927708|gb|EEH23750.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei Pakistan 9] Length = 384 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 93/362 (25%), Positives = 146/362 (40%), Gaps = 40/362 (11%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M+ ALR + + T NP V C+I + +G G G PHAEV AL EAGE ARGA Sbjct: 1 MAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALREAGERARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RM 129 TAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ GI+V+ + Sbjct: 61 TAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLADAGIVVEQGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQD--NMIGMAGCGSVPITGFISKNQVHLLR 187 + ++ + + +R R + + D + A ++ +++ + R Sbjct: 121 LAAQARELNIGFFSRIERGRPWTRATLGLPIDAPPALDSAELAALDAALSEARDDLRHWR 180 Query: 188 AQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVI 246 A+S +L A D R G +P ++ + P + Sbjct: 181 ARSSLVL-----ERAPD---AGRAVGCNAAAPRYVVSARDCAALGAASAACAPADGVPTL 232 Query: 247 IVTENDDPVLALAF-RKKNINIIYCDCRD----------------------LKKLLTILV 283 + +D+ A D D L L Sbjct: 233 ALHRDDNSASACEDAHGIGHRARRVDRVDHADARPAGAPSASASDTDAGLPLPDAFARLA 292 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 +GV LLV+ A+ + S L D ++LY +P+ L V R Sbjct: 293 RQGVNELLVDADLALCDALFGSDLADELLLYAHP-----ARRDAPVSASRLAAAIDDVAR 347 Query: 344 DY 345 + Sbjct: 348 RW 349 >gi|215694535|dbj|BAG89528.1| unnamed protein product [Oryza sativa Japonica Group] Length = 401 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 94/204 (46%), Gaps = 6/204 (2%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 ++ D I + + ++G S+ +V LR +SDAI+VG TV DDP LT R ++ H Sbjct: 1 MTADGKIAASSGHASWVSGKSSRGRVFELRGRSDAIIVGGNTVRLDDPRLTAR--HVKGH 58 Query: 218 SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKK 277 P+RI++ L ++ + ++ L K + ++ D + + Sbjct: 59 VPVRIVMSQSLNLPEEANLWNVHDAYTIVATQRGARRDLQKKLALKGVEVVEFDMLNPRD 118 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 +++ RG S+L E G +A S I++ ++ + + + +IG P+P+ E + + Sbjct: 119 VMSYCYDRGYLSVLWECGGTLAASAISASVIHKVYAFLAPKIIGGVNAPTPVGELGMNQM 178 Query: 338 FMCVRRDYFGSDVCLEYIGKNLCL 361 + DV E I +++ + Sbjct: 179 TQAIDLI----DVSYEQIDRDMLM 198 >gi|254168441|ref|ZP_04875285.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] gi|197622496|gb|EDY35067.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Aciduliprofundum boonei T469] Length = 217 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 14/219 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + + A+S D I + G + I+ +VH +RA DAILVGI T+L DDP+ Sbjct: 1 MDRPKVIINAAMSVDGKIALVGGKRIKISDEEDFKRVHKMRASVDAILVGINTILKDDPK 60 Query: 207 LTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT + + +P+R++LD ++ +++++ +A II T + L I Sbjct: 61 LTVKEKYVVNAKNPVRVVLDSKLRIPQNARVLN--SMAKTIIATTENAK---LGELNAEI 115 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 I + DL+ LL L RG+ S++VEGG V SF+ LVD + ++ +VIG G Sbjct: 116 VICGKNKVDLRCLLNELWKRGIKSVMVEGGGTVISSFLRENLVDELNVFVGSLVIGGGA- 174 Query: 326 PSPLEEGYLEKN------FMCVRRDYFGSDVCLEYIGKN 358 S L EG KN + GS + L Y ++ Sbjct: 175 -SSLVEGIGAKNENEVIRLKFLECKPLGSGILLRYGVRD 212 >gi|284162163|ref|YP_003400786.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus profundus DSM 5631] gi|284012160|gb|ADB58113.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus profundus DSM 5631] Length = 222 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 13/218 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + +A S D I + I+ +V LRA+SDAI+VGIGTVL+D+P+LT Sbjct: 3 PFTFINVASSVDGKISNEKRIQLRISCEEDLKRVDELRAKSDAIMVGIGTVLSDNPKLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 RL ++ +P+R+++D ++ LD+K++ ++ V+ + R Sbjct: 63 KSEELRKRRLEEGRDANPIRVVVDSKCRIPLDAKVLD-ESAKTIVAVSRIANSEKVNTLR 121 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + +++ D DLK L+ L GV L+VEGGA + + + LVD I +Y ++ Sbjct: 122 RMGVDVFVAGDDKVDLKALVEYLYKIGVRVLMVEGGATLNWAMLREGLVDEIYVYYGNMI 181 Query: 320 IGEGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355 IG P+ ++ + + + G + + Sbjct: 182 IGGSKAPTVVDGMSFDPPISLDLLDVRKLGRGILTRWR 219 >gi|240145210|ref|ZP_04743811.1| riboflavin biosynthesis protein RibD domain protein [Roseburia intestinalis L1-82] gi|257202673|gb|EEV00958.1| riboflavin biosynthesis protein RibD domain protein [Roseburia intestinalis L1-82] Length = 222 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 56/186 (30%), Positives = 91/186 (48%), Gaps = 11/186 (5%) Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSK 235 ++ QVH +R + I+VG GTV+ADDP L CRL Q P+RI+ D ++ L S+ Sbjct: 32 REAAREQVHRMRHEMTGIMVGAGTVIADDPMLNCRLP--QTKDPVRIVCDTTLRIPLKSR 89 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD----CRDLKKLLTILVGRGVTSLL 291 I++TA II T D ++K II + DLK+L+ L G+ S+L Sbjct: 90 IVQTAEEQNTIIATCCQDEAKIREYQKYGCRIIVTEHADGKVDLKELMRQLGADGIESVL 149 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN-----FMCVRRDYF 346 +EGGA + S + + +V+ + Y + + G SP+ ++ + R Sbjct: 150 LEGGAMLNWSALEAGIVNEVYAYVAPKLFGGADAKSPVAGIGVDYPDDAYCLVSQRVQQV 209 Query: 347 GSDVCL 352 G D+ + Sbjct: 210 GEDILI 215 >gi|21672710|ref|NP_660777.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091139|sp|Q8K9A4|RIBD1_BUCAP RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase gi|21623353|gb|AAM67988.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 147 Score = 183 bits (464), Expect = 5e-44, Method: Composition-based stats. Identities = 56/145 (38%), Positives = 91/145 (62%), Gaps = 1/145 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+ A++ S+ TS NP+V C+IV++ ++G G G HAE+ AL AGE+ Sbjct: 3 DRFYMTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G+TAY+TLEPC+H+G++PPC II+ GI+ V++ DP+ +VSG+G+ +L +KGI + Sbjct: 63 AKGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150 +M E + + + R Sbjct: 123 KIGLMSKESQKYNKGFFKRMRTGLP 147 >gi|20139385|sp|P57533|RIBD1_BUCAI RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase Length = 147 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 57/145 (39%), Positives = 87/145 (60%), Gaps = 1/145 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+ Sbjct: 3 DIFYMKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+G TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI + Sbjct: 63 AQGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRS 150 ++ E K + + R Sbjct: 123 KTGLLSKESKQYNKGFFKRMKTGFP 147 >gi|20093538|ref|NP_613385.1| pyrimidine reductase [Methanopyrus kandleri AV19] gi|19886379|gb|AAM01315.1| Pyrimidine reductase [Methanopyrus kandleri AV19] Length = 235 Score = 182 bits (462), Expect = 8e-44, Method: Composition-based stats. Identities = 60/217 (27%), Positives = 103/217 (47%), Gaps = 12/217 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + + ++ D + A S I+G +VH LRA+ DA+ VGI TV DDP Sbjct: 1 MPRPKVLYNVGMTADGKVVTAAGDSR-ISGEEDLKEVHRLRAEHDAVAVGINTVRKDDPM 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 L RL ++ P+R++ D + LD ++++TA P +++ DP K+ + Sbjct: 60 LNVRL--VEGEDPIRVVFDTECSIPLDCRLVRTARDIPTVVLCAEADPGRVEKLEKRGVK 117 Query: 267 IIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + D D+++ L +L GV +LL+EGG +A SF+ L+D + + +++G Sbjct: 118 VEEVGACEDGVDVERGLELLYDMGVRTLLLEGGPTLAWSFLKRGLIDEFRVAVAPVLVGG 177 Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 +P+E + R + G DV L Y Sbjct: 178 SDALTPVEGEGFPRVDLGVGLELKRVERVGRDVVLWY 214 >gi|15678263|ref|NP_275378.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanothermobacter thermautotrophicus str. Delta H] gi|6225947|sp|O26337|RIB7_METTH RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2621283|gb|AAB84741.1| riboflavin-specific deaminase [Methanothermobacter thermautotrophicus str. Delta H] Length = 216 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 11/216 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I A S I+G +VH LR + DAI+VGI TVLADDP LT Sbjct: 3 PYVILNAAMTLDGKIATATGSS-EISGEEDLRRVHELRRECDAIMVGINTVLADDPRLTV 61 Query: 210 -RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R++ +P+R+++D + +++ AP +I P +A +K ++ Sbjct: 62 HRVDAAPGDNPVRVVVDSMARTPPHFRVLNDE--APTVIGVSESAPPERVAELRKRAEVV 119 Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 R DL LL L G G+ L++EGG+ + +S + LVD + + + +++G Sbjct: 120 VAGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMIVGGRDAR 179 Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357 + ++ +++ +R + G D+ +EY K Sbjct: 180 TLVDGEGIDEMADAIRLELKRSYTLGEDLIVEYTVK 215 >gi|303244611|ref|ZP_07330944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermococcus okinawensis IH1] gi|302485037|gb|EFL47968.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermococcus okinawensis IH1] Length = 225 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 57/217 (26%), Positives = 102/217 (47%), Gaps = 14/217 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +S D + S I+G +VH +R D I+VGIGT+L DDP LT Sbjct: 7 PYVISNVGMSLDGKLATIDNDSR-ISGEEDLKRVHNIRKNVDGIMVGIGTILKDDPRLTV 65 Query: 210 RLNGLQ-EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK----KN 264 + +P+RI++D + ++ L+++++ +I T D P K +N Sbjct: 66 HKIDAKIGDNPIRIVIDSNLRIPLNARVLNKD-AKTIIATTLKDTPNKIEKINKLKDMEN 124 Query: 265 INIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + II + +LKKL+ IL +G+ +L+EGG + LVD + +Y + + G Sbjct: 125 VEIIRTGIEKVNLKKLMEILYKKGIKKILLEGGGTLNWGMFKENLVDEVSVYVAPKIFGG 184 Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 G P+ ++ + CV+ F + LE+ Sbjct: 185 VGAPTYVDGEGFKTVDECVKLKLEKYYPFDEGIVLEF 221 >gi|159905708|ref|YP_001549370.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C6] gi|159887201|gb|ABX02138.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C6] Length = 360 Score = 180 bits (458), Expect = 3e-43, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 125/300 (41%), Gaps = 35/300 (11%) Query: 88 CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIF-------- 137 A +I I V++ D + ++ +GI V+ ++ E + Sbjct: 58 IADDLIARNISEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSRGDLKDI 117 Query: 138 --LHAYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 L+ Y++R++ ++ + ++ D + S I+G +VH +R Sbjct: 118 ESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIR 176 Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 DAI+VGIGTVL DDP LT +N + +P+RI++D + K+ L+++++ A + Sbjct: 177 KDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVIDSNLKIPLNARVLNND--AKTV 234 Query: 247 IVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T E ++ + L + DL+K++ + G+ +L+EGG + Sbjct: 235 IATTTPISYEKEEKIRKLKEMGIMVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355 L++ + +Y + + G P+ ++ + + + LEY Sbjct: 295 GMFKENLINEVRVYIAPKIFGGSNSPTYVDGEGFKNVEECTKLELKKYYPLDDGIVLEYR 354 >gi|329114509|ref|ZP_08243268.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001] gi|326695989|gb|EGE47671.1| Riboflavin biosynthesis protein RibD [Acetobacter pomorum DM001] Length = 350 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 122/309 (39%), Gaps = 37/309 (11%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68 A+ + VG T+ NP V C+++ G V+ G HAE A+E+A G R Sbjct: 22 LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGLVER 81 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 TA VTLEPC+H GR+PPC + ++ ++ + DP+ V G G L +GI V+R Sbjct: 82 IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTAWIGCADPNPHVQGGGAARLEHEGITVNR 141 Query: 129 MME--------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + + + + L + R R IT+K A+ + T S Sbjct: 142 LWQCMNAAGTYARCRALLAPFAWRMTHGRPWITVKQALDSKGSMVPPQGQKT-FTTPASL 200 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR +D I+ G GTVLAD P LT R + Sbjct: 201 RLAHALRRVTDGIVTGTGTVLADRPTLTVR------------------------HVEDHP 236 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 +++V + A + C D+ +L IL +LVE G + Sbjct: 237 ERRRLLVVCGQEKHAPAEWLASVSAAFDVSFCPDIAQLPYILAQSDALWVLVEAGPTLLE 296 Query: 301 SFINSRLVD 309 + L D Sbjct: 297 ALKTHNLWD 305 >gi|297618676|ref|YP_003706781.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus voltae A3] gi|297377653|gb|ADI35808.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus voltae A3] Length = 235 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 22/233 (9%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + ++ D + I+G +VH +R DAI+VGIGTVL D+P+LT Sbjct: 3 PYVISNVGMTLDGKLSTVEND-TRISGENDLKRVHQIRKDVDAIMVGIGTVLKDNPKLTI 61 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT------ENDDPVLALAFRK 262 + +P+RI++D + ++ LDS+++ A +I T E + + + K Sbjct: 62 HKIPLENNKNPVRIVVDSNLRIPLDSRVLNED--AKTVIATTEYGSLEQSEKIKRIEKIK 119 Query: 263 K-----NINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + N+ IIY DL+ L+ L + S+L+EGG + LVD + +Y Sbjct: 120 ELESIENVEIIYSGNLKVDLELLMGKLSKMDIKSILLEGGGTLNWGMFEKNLVDEVRVYV 179 Query: 316 SQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGKNLCLQE 363 + + G P+ ++ + N + + LEY K QE Sbjct: 180 APKIFGGSNAPTYVDGDGFKTLEDCVNLELIDYYQMDEGIVLEYFIKKDNNQE 232 >gi|163845756|ref|YP_001633800.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aurantiacus J-10-fl] gi|222523464|ref|YP_002567934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp. Y-400-fl] gi|163667045|gb|ABY33411.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aurantiacus J-10-fl] gi|222447343|gb|ACM51609.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus sp. Y-400-fl] Length = 221 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 67/218 (30%), Positives = 105/218 (48%), Gaps = 15/218 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R +TL A + D + S I+G S H LRA SDAI+VG+GTVL DDP Sbjct: 1 MMRPRVTLCFAQTLDGRVAAVDGSSQWISGPESLRFCHHLRANSDAIMVGVGTVLRDDPR 60 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNI 265 LT RL + P+R+I+D H + + +I+ ++ P +A ++ Sbjct: 61 LTTRL--VAGPDPLRVIVDTHLRTPTTAAVIRDGAGTGTLLACTAAAPLERRIALQECGA 118 Query: 266 NIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ DL LLT L RGV S++VEGGA + S + + LVD++ + + I++ Sbjct: 119 TVLTMPEAAGGGVDLAALLTALGERGVASVMVEGGARLITSLLRANLVDALAVTIAPIIL 178 Query: 321 GEGGIPSPLEEGYL-----EKNFMCVRRDYFGSDVCLE 353 G G PS + + + V +G+DV +E Sbjct: 179 GSG--PSAIGDLGILTLNQALRLTNVTWTTYGADVVIE 214 >gi|239917588|ref|YP_002957146.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] gi|281413925|ref|ZP_06245667.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] gi|239838795|gb|ACS30592.1| riboflavin biosynthesis protein RibD [Micrococcus luteus NCTC 2665] Length = 377 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 138/329 (41%), Gaps = 34/329 (10%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEEAR- 68 M A+ + G+ NP V ++ + G V+ G G HAEV AL Sbjct: 12 MDLAVHAALR--GVRGANPLVGAVLTDEAGRVLAVGHHRGRGTAHAEVDALARWRAARAA 69 Query: 69 ----------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G T +VTLEPC H G + PC+Q +++ I + V DP G + Sbjct: 70 DPALAALDPAGLTLHVTLEPCDHTGSTGPCSQAVLDAEIGALRYAVADPTGHDGGGAARL 129 Query: 119 LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFI 178 + + E+ + + R +T +A S D A S ITG Sbjct: 130 AAHGVHVTGPTGETAALTLTARWREVRDAGRPWVTGHLAQSLDGHAAAADGTSQWITGPD 189 Query: 179 SKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE--HSPMRIILDPHFKLSLDSKI 236 S+ H +R++ DAI+VG GTVLADDP LT R E H P+ ++ + D Sbjct: 190 SRVHAHKVRSRVDAIVVGTGTVLADDPRLTARDAVGAELAHQPVPVV--QGHRPVPDGAA 247 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGA 296 ++T PV++ + DP LA + GR +L+EGG Sbjct: 248 LRT---HPVVLEVLDHDPHAVLAALAAHPGPWP-------------HGRRAEHVLIEGGP 291 Query: 297 AVAHSFINSRLVDSIILYRSQIVIGEGGI 325 V +++ + LVD +++Y + +++G G Sbjct: 292 RVLGAWLRAGLVDELMVYTAPLLLGPGRA 320 >gi|304314445|ref|YP_003849592.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermobacter marburgensis str. Marburg] gi|302587904|gb|ADL58279.1| predicted 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanothermobacter marburgensis str. Marburg] Length = 216 Score = 179 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 105/216 (48%), Gaps = 11/216 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I S I+G +VH LR + DAI+VGI TVLADDP LT Sbjct: 3 PYVILNAAMTLDGKIATKTGSS-EISGEEDLRRVHELRRECDAIMVGINTVLADDPRLTV 61 Query: 210 -RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R++ + +P+R+++D + L+ +++ AP +I P + +K ++ Sbjct: 62 HRVDAEEGDNPVRVVVDSRARTPLNFRVLNDE--APTVIGVSESAPASRVNELRKRAEVV 119 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + +L LL L GV L++EGG+ + +S + LVD + + + ++ G Sbjct: 120 VAGKERVNLCLLLERLHEMGVRRLMLEGGSTLNYSMLTEGLVDEVRVCIAPMIAGGREAR 179 Query: 327 SPLEEGYLEKNFMCVRRDY-----FGSDVCLEYIGK 357 + ++ ++ ++ + G D+ +EY K Sbjct: 180 TLVDGEGIDDMSDAIKLELERFYTLGEDLIVEYTVK 215 >gi|299115418|emb|CBN75583.1| riboflavin biosynthesis protein [Ectocarpus siliculosus] Length = 541 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 94/374 (25%), Positives = 153/374 (40%), Gaps = 82/374 (21%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63 D M AL + +G T NP+V C+I+ K+G V+G G G PHAEV A+ +A Sbjct: 68 EVDGAHMRRALELAAKGLGHTRPNPAVGCVILDKEGSVVGEGFHPRAGEPHAEVWAIRQA 127 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 GE ARG TAYV+LEPC+H+GR+PPC ++ECG+ RVV + DPD R +G GL+ L+ G Sbjct: 128 GERARGGTAYVSLEPCNHFGRTPPCTTALLECGVARVVAGMVDPDPRTAGSGLRRLADAG 187 Query: 124 I-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQ 182 I + + + A++ R K + L + G S I S+ Sbjct: 188 IDVSVGVEGAACHALNSAFVHRVSHKSCYGVLHC--------CLDGACSRSIPQSGSRAG 239 Query: 183 VHLLRA-----------------QSDAILV----GIGTVLADDPELTCRLNGLQEHSPMR 221 V L+ + DAI+V G+ + A + L + +R Sbjct: 240 VGGLQDTARENDLAVPPGGRNFEEYDAIVVEGRSGVAKLEACNSAL--------PPTALR 291 Query: 222 IIL-----DPHFKLS----LDSKIIKTALLAPVII--VTENDDPV------LALAFRKKN 264 +++ D ++ L+S++++ + V+ T D + + + Sbjct: 292 VVIVGAGSDEGLEIELAGVLESRLLEESPERTVVFMPATAGQDGDGSLTGSVRASLMSRG 351 Query: 265 INIIYCDCRD--------------------------LKKLLTILVGRGVTSLLVEGGAAV 298 I ++ D + L RG+ S E G A+ Sbjct: 352 IAVVDFRTPDTPTPPASSLDEERPETATAAATMAAAAGAVSRELFRRGMLSAAWEVGPAM 411 Query: 299 AHSFINSRLVDSII 312 A + + V + Sbjct: 412 AAVVLRAGHVQRAL 425 >gi|150399410|ref|YP_001323177.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus vannielii SB] gi|150012113|gb|ABR54565.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus vannielii SB] Length = 357 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 115/300 (38%), Gaps = 35/300 (11%) Query: 88 CAQFIIECGIRRVVVCVDDPDVRV--SGRGLQWLSQKGIIVDRMMESE------------ 133 A + + GI V++ D + L +GI V+ ++ +E Sbjct: 58 IADTLKKEGILEVILLTDFDKAGKKYAREILSEFQNRGIKVNNILRNELLKYSRGDLKDI 117 Query: 134 ------GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 + H+ + ++ D + S I+ +VH LR Sbjct: 118 ESIYAYISRRVDIMPNFDDMLLPHVISNVGMTLDGKLATVSNDSR-ISSENDLKRVHELR 176 Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + D ILVGIGT+L DDP LT + + + +P+RI++D ++ + ++++ + A I Sbjct: 177 KEVDGILVGIGTILKDDPRLTVHKVPAVPKENPIRIVVDSSLRIPMTARVLNSD--AKTI 234 Query: 247 IVT------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T E D+ + L + +LK L+ L +G+ +L+EGG + Sbjct: 235 IATTKPSSNEKDEKIRKLISMGVTVIQTGAKKVNLKDLMNELYKQGIKKILLEGGGTLNF 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYI 355 L+ I +Y + + G P+ ++ + + LEYI Sbjct: 295 GMFKENLISEIRVYVAPKIFGGSNAPTYVDGEGFKTVEDSPKLELKNHYILDDGIILEYI 354 >gi|259506813|ref|ZP_05749713.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens YS-314] gi|259165599|gb|EEW50153.1| riboflavin biosynthesis protein RibD [Corynebacterium efficiens YS-314] Length = 254 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 76/285 (26%), Positives = 116/285 (40%), Gaps = 36/285 (12%) Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF 137 PC+H GR+ PC+Q +I+ GI RV DP + +G G L Q G+ + Sbjct: 1 PCNHTGRTGPCSQALIDAGIARVFYANPDPFPQAAG-GADHLRQAGVDTHLLGLP--VPT 57 Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L +L R HITLK A + D S ITG ++ VH R + DAI+VG Sbjct: 58 LSPWLRATKLGRPHITLKFAGTLDGFAAATDGTSQWITGETARAHVHADRTRRDAIIVGT 117 Query: 198 GTVLADDPELTCRLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 GT L D+P LT R GL +H P R+++ + S + + Sbjct: 118 GTALTDNPSLTARGPAGLYDHQPRRVVIGRRP-VPAGSNLDRLGFE-------------- 162 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + + L L G +L+EGG +A + + + L+D+I Y + Sbjct: 163 --------------QYPGIDEALAALWESGCRDVLLEGGPTLAGAMLRAGLIDAIRAYVA 208 Query: 317 QIVIGEGGIPSPLEEGYLEK---NFMCVRRDYFGSDVCLEYIGKN 358 ++G G + G F G DV ++ K+ Sbjct: 209 PAILGAGRSVLSWDGGTTISDITRFTTTAVHRLGDDVLIDMTRKD 253 >gi|11499589|ref|NP_070831.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM 4304] gi|6225946|sp|O28272|RIB7_ARCFU RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|2648530|gb|AAB89247.1| riboflavin-specific deaminase (ribG) [Archaeoglobus fulgidus DSM 4304] Length = 219 Score = 178 bits (453), Expect = 8e-43, Method: Composition-based stats. Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 8/207 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +A S D I + I+ V LRA+SDAI+VGIGTVLADDP LT Sbjct: 3 PYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R +E +P+R+++D ++ L ++I+ V + + + + Sbjct: 63 KSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDEARTLVAVSRIAPEEKVREVKK 122 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + + + +L LL L +GV L+VEGG + S I+ LVD I +Y I IG Sbjct: 123 VAEVAVFGEERVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPIFIG 182 Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGS 348 P+ + K + + G Sbjct: 183 GRDSPTVCDGESFLKKCRIEKIERIGE 209 >gi|45358911|ref|NP_988468.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis S2] gi|45047777|emb|CAF30904.1| Conserved hypothetical protein [Methanococcus maripaludis S2] Length = 360 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 126/299 (42%), Gaps = 35/299 (11%) Query: 88 CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIF-------- 137 A +I I V++ D + ++ +GI V+ ++ E + Sbjct: 58 IADDLIAKNISEVILLTDFDRAGREYAKNIMEEFQSRGIKVNNLIRKEILKYSRGDLKDI 117 Query: 138 --LHAYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 L+ Y++R++ + + ++ D + S I+G +VH +R Sbjct: 118 ESLYPYISRRINFNSDLSDIMLPFVISNVGMTLDGKLATIDNDSR-ISGENDLKRVHEIR 176 Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 + DAI+VGIGTVL DDP LT +N + +P+RI++D + K+ L ++++ A + Sbjct: 177 KEVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLTARVLN--KDAKTV 234 Query: 247 IVTE----NDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T ++ + I ++ DL+K++ + G+ +L+EGG + Sbjct: 235 IATTTPISDEKEEKIRKLNEMGIIVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 L++ + +Y + V G P+ ++ + C + + + LEY Sbjct: 295 GMFKENLINEVRVYIAPKVFGGASSPTYVDGNGFKNVEECTKLELKNYYPLDDGIVLEY 353 >gi|78776878|ref|YP_393193.1| riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans DSM 1251] gi|78497418|gb|ABB43958.1| Riboflavin biosynthesis protein RibD [Sulfurimonas denitrificans DSM 1251] Length = 336 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 138/349 (39%), Gaps = 73/349 (20%) Query: 6 FDA-RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA 63 D +M AL + + GLT NP+V C+I+ K G ++ G PHAEV+AL+ A Sbjct: 3 IDENFYMRLALNEAWKYQGLTYPNPAVGCVIISKSGEILALEAHKRAGLPHAEVEALKSA 62 Query: 64 ---------------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECG 96 + + AT Y TLEPCSH G++P CA I + Sbjct: 63 YIVLSGDKKILELTESAQIHNYLLENHNDYFKDATIYTTLEPCSHIGKTPSCATLISKLN 122 Query: 97 IRRVVVCVDDPDVRVSGRGLQWLSQKGII-VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 I++++V D + ++ G + ++ G+ +M+ E L + Q +K Sbjct: 123 IKKLIVGSLDSN-EIASGGNKVVNDAGVEIKYGVMQKECDELLLPFWLWQKDKFVFFKW- 180 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 + G G I+ S+ +VH +R D +++G +V D P L RL + Sbjct: 181 ----AQRLNGTVDGGI--ISSSKSRTKVHAMRDVCDLLVIGGNSVRVDRPTLDARL--VN 232 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 +P +I+ + KN +++ D D+ Sbjct: 233 GRAPDILIVSKSDDFDKTIPLFS-----------------------VKNRDVVISDNFDI 269 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + ++++EGG + + +V+ + + S ++ G+ G Sbjct: 270 L--------KNYKNIMIEGGGGMFE--YSKDVVNYHLTFISPLIGGDDG 308 >gi|157415842|ref|YP_001483098.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 81116] gi|157386806|gb|ABV53121.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 81116] gi|307748478|gb|ADN91748.1| Putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni M1] gi|315931666|gb|EFV10627.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 327] Length = 336 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 87/374 (23%), Positives = 155/374 (41%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAIAHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI ++ +++ EGK L +L Q E+ L ++++ Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEIEFDILKEEGKKLLKPFLKWQKEQFKLFKLALSMNG 191 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG +F + +D ++++S + E + PL NF Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 321 LYRNFLGSDTYGIY 334 >gi|329889480|ref|ZP_08267823.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] gi|328844781|gb|EGF94345.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] Length = 208 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 70/210 (33%), Positives = 101/210 (48%), Gaps = 12/210 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + LK+A S D I A S ITG ++ Q H LRA DAILVG+ TVLADDPELT Sbjct: 3 PRVILKLATSLDGRIATATGESQWITGPEARLQGHRLRATHDAILVGVETVLADDPELTV 62 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL P+R++LD + +K+ A +I T P+ + + Sbjct: 63 RLPDYAGTHPLRVVLDSRLRTPATAKV---ASGNTLIFTTAQPHPIGQAEV----VAVAP 115 Query: 270 CDCRD-LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327 D R + +L L R + S+L+EGG VA SFI + VD+I +R+ +++G G P Sbjct: 116 NDGRPAISAVLDALAARNIGSILIEGGGRVAASFIQAGAVDAIEWFRAPMLLGGEGRPCI 175 Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L + F + + G D+ Y Sbjct: 176 ASLALAKLAHAPKFRRLGVEPVGDDLWERY 205 >gi|86152320|ref|ZP_01070531.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 260.94] gi|315125029|ref|YP_004067033.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840809|gb|EAQ58060.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 260.94] gi|315018751|gb|ADT66844.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 326 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 153/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKRQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG +F + +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|84489977|ref|YP_448209.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera stadtmanae DSM 3091] gi|84373296|gb|ABC57566.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaera stadtmanae DSM 3091] Length = 215 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 57/210 (27%), Positives = 101/210 (48%), Gaps = 6/210 (2%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I I+G +VH LR + D I+VGI TVL D+P+LT Sbjct: 3 PYVLLNSAMTVDGKIATNNSSMK-ISGKNDLIRVHTLRKEYDGIMVGINTVLIDNPKLTI 61 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 +N + +P RII+D ++ LDSK++ VI+ ++ + + L K N+ I Sbjct: 62 HKINCKKSENPTRIIVDSSARIPLDSKVLNDDAKTIVIVSSKANKASVELLKEKCNVIIC 121 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 +LK L L G+ S+L+EGG+ + S +L+D + + ++G + Sbjct: 122 GSKQVNLKLALDKLYSLGIKSILLEGGSTLNFSMFKEKLIDEVSICIGSKILGGYDSKTF 181 Query: 329 LEEGYLEK----NFMCVRRDYFGSDVCLEY 354 ++ +K N + + D+ L+Y Sbjct: 182 VDGEGFDKNDCINLKIKKVEKIDDDILLKY 211 >gi|258542930|ref|YP_003188363.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01] gi|256634008|dbj|BAH99983.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01] gi|256637068|dbj|BAI03037.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-03] gi|256640120|dbj|BAI06082.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-07] gi|256643177|dbj|BAI09132.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-22] gi|256646232|dbj|BAI12180.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-26] gi|256649284|dbj|BAI15225.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-32] gi|256652271|dbj|BAI18205.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655328|dbj|BAI21255.1| riboflavin biosynthesis protein RibD [Acetobacter pasteurianus IFO 3283-12] Length = 350 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 85/309 (27%), Positives = 130/309 (42%), Gaps = 37/309 (11%) Query: 13 AALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEAR 68 A+ + VG T+ NP V C+++ G V+ G HAE A+E+A G R Sbjct: 22 LAVAEAWSFVGRTAPNPPVGCVLLDAQGDVLVVAAHHQAGTAHAERLAVEQARALGVVER 81 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR 128 TA VTLEPC+H GR+PPC + ++ ++ V + DP+ V G G L ++GI V+R Sbjct: 82 IDTAVVTLEPCNHTGRTPPCTEALLSTPVKTVWIGCADPNPHVQGGGAARLEREGITVNR 141 Query: 129 MME--------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + + + + L + R R +T+K A+ + T S Sbjct: 142 LWQCMNAAATYARCRALLAPFAMRMTHGRPWVTVKQALDSKGSMVPPKGQKT-FTTPASL 200 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 H LR +D I+ GTVLAD P LT R +++H R +L Sbjct: 201 RLAHTLRRVTDGIVTATGTVLADRPTLTVR--HVEDHPERRRLL---------------- 242 Query: 241 LLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 V+ E P L ++ +C D+ +L IL +LVE G + Sbjct: 243 ----VVCGQEKHAPAEWLDSVSAAFDVRFCP--DIAQLPDILAQSDALWVLVEAGPTLLE 296 Query: 301 SFINSRLVD 309 + L D Sbjct: 297 ALKTHNLWD 305 >gi|150402518|ref|YP_001329812.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C7] gi|150033548|gb|ABR65661.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C7] Length = 360 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 64/300 (21%), Positives = 127/300 (42%), Gaps = 35/300 (11%) Query: 88 CAQFIIECGIRRVVVCVDDPDVR--VSGRGLQWLSQKGIIVDRMMESEGKIFLH------ 139 A +I I V++ D + ++ +GI V+ ++ E + H Sbjct: 58 IADDLIAKNIPEVILLTDFDRAGRVYAKNIMEEFQSRGIKVNNLIRKEIIKYSHGDLKDI 117 Query: 140 ----AYLTRQVEKR--------SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLR 187 Y++R++ ++ + ++ D + S I+G +VH +R Sbjct: 118 ESLYPYISRRITINGDLSDIMVPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIR 176 Query: 188 AQSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 DAILVGIGTVL DDP LT +N + +P+RI++D K+SL+++++ A + Sbjct: 177 KDVDAILVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSSLKISLNARVLN--KDAKTV 234 Query: 247 IVTE----NDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 I T ++ ++ I ++ DL+K++ + G+ +L+EGG + Sbjct: 235 IATTTPISDEKEEKIRKLKEMGITVLRAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 L++ + +Y + V G P+ ++ + C + + + LEY Sbjct: 295 GMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYR 354 >gi|282163718|ref|YP_003356103.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine reductase [Methanocella paludicola SANAE] gi|282156032|dbj|BAI61120.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine reductase [Methanocella paludicola SANAE] Length = 230 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 14/226 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP Sbjct: 1 MERPFTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRASSDAVMVGIGTVLADDPS 60 Query: 207 LTCR--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT + ++ +E +P RI++D ++ L + + K + +++V+++ Sbjct: 61 LTVKSEERRRRRVSEGKEENPARIVVDSKARIPLTADVFKKGVGKRIVVVSKSAPSDKVE 120 Query: 259 AFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + K ++ + + DL + L RG+ L+VEGGA + + + LVD I ++ Sbjct: 121 ALKAKADVIVAGGEEVDLPVMSGELKKRGIDRLMVEGGATLNWAMTRAGLVDEISVFVGN 180 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYIGKN 358 ++IG P+ ++ + + + D V L + ++ Sbjct: 181 LIIGGKTAPTFMDGEGISERSEAIELDLEKCERMDEGVVLTWRVRS 226 >gi|288560264|ref|YP_003423750.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD [Methanobrevibacter ruminantium M1] gi|288542974|gb|ADC46858.1| diaminohydroxyphosphoribosylaminopyrimidine reductase RibD [Methanobrevibacter ruminantium M1] Length = 226 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 21/223 (9%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I S I+G +VH +R + D I+VGIGTVLADDP LT Sbjct: 3 PYVILNAAMTLDGKIATKTGSS-EISGKEDLERVHEIRKKVDGIMVGIGTVLADDPRLTV 61 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN----------DDPVLAL 258 +N +E +P+RI++D + L+ +I+ A II + ++ V Sbjct: 62 HKINARKEDNPIRIVVDNKARTPLNFRILNDD--AETIIAVSSICDERNENCDEEAVKRA 119 Query: 259 AFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 +K +N+ Y + DL + + L G+ S+++EGG+ + S I L+D + + + Sbjct: 120 KELEKRVNVFYSTGETVDLVEFMEYLYDYGIKSIMLEGGSTLNFSMIRDGLIDEVKICIA 179 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 +++G + + + V+ + G D +EY Sbjct: 180 PMIVGGKDSKTFFDGDGFDYMKDAVQLELINSFPLGKDFIMEY 222 >gi|134045275|ref|YP_001096761.1| bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanococcus maripaludis C5] gi|132662900|gb|ABO34546.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanococcus maripaludis C5] Length = 360 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 100/218 (45%), Gaps = 15/218 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + ++ D + S I+G +VH +R DAI+VGIGTVL DDP LT Sbjct: 140 PYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRKDVDAIMVGIGTVLKDDPRLTV 198 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE----NDDPVLALAFRKKN 264 +N + +P+RI++D + K+ L+++++ A +I T ++ ++ Sbjct: 199 HKINASPKDNPLRIVVDSNLKVPLNARVLN--KDAKTVIATTTPISDEKEEKIRKLKEMG 256 Query: 265 INIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 I ++ DL+K++ + G+ +L+EGG + L++ + +Y + V G Sbjct: 257 IMVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGG 316 Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 P+ ++ + C + + + LEY Sbjct: 317 ANSPTYVDGKGFKNVEECTKLELKNYYPLDDGIVLEYR 354 >gi|319948957|ref|ZP_08023062.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4] gi|319437395|gb|EFV92410.1| riboflavin biosynthesis protein RibD [Dietzia cinnamea P4] Length = 288 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 86/290 (29%), Positives = 127/290 (43%), Gaps = 37/290 (12%) Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 +TLEPC H+GR+ PC + G+ RVV V DP+ V+ G L + G+ V R + E Sbjct: 1 MTLEPCDHHGRTGPCTARALAAGVARVVYAVSDPNP-VAAGGADTLRRAGVDVSRGDDDE 59 Query: 134 GKI----FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + L A+L RQ R +T K A S D + A S ITG +S++ H R + Sbjct: 60 VRAAGDGPLRAWLHRQAHGRPFVTWKYAASLDGRVAAADGSSRWITGPVSRHHAHARRQE 119 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQ--EHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 DA++VG GT+ ADDP LT RL+ + P+R ++ P Sbjct: 120 IDALVVGTGTLTADDPALTARLDDGRPAPRQPLRAVM--------------GLSAVPTGA 165 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 DD + RD + L +L V +LVEGG +A +F+ + L Sbjct: 166 AVRGDD-----------GRFRHLATRDPAEALAMLGD--VCHVLVEGGPRLAGAFLAAGL 212 Query: 308 VDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 VD + Y + +V+G G + + F G+DV L Sbjct: 213 VDEVDAYIAPLVLGGGRSAVEGAGVATLTDAHGFTVRETTVLGADVHLRM 262 >gi|296272024|ref|YP_003654655.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM 7299] gi|296096199|gb|ADG92149.1| riboflavin biosynthesis protein RibD [Arcobacter nitrofigilis DSM 7299] Length = 335 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 144/372 (38%), Gaps = 79/372 (21%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A+ + + LT NP+V C++VK+G ++ G HAEV AL+ A Sbjct: 4 DDKFYMKLAIDEAWKYQLLTYPNPAVGCVVVKNGEILAIEAHKEAGMSHAEVNALKAAYL 63 Query: 66 EAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 + YVTLEPC+H G++P CA + E + Sbjct: 64 KKHANDTLKIKKSSREIHEYLLKNHNNFFNDCEIYVTLEPCNHIGKTPSCANLLKELKPK 123 Query: 99 RVVVCVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 RV++ +D + + + G+Q L I + M+ E L+ ++ + K+A Sbjct: 124 RVIIAHEDTN-KQASGGIQTLESVNIDITLDCMKKEAYDLLYPFIKWNSGTF--VFYKMA 180 Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH 217 + + I ++ +++ VH LR + D +L+G TV D P L R + Sbjct: 181 QTLNGSIDGK------VSSTMAQLYVHTLRDKIDLMLIGGNTVRTDKPTLDARYIAGRAP 234 Query: 218 SPMRIILDPHFKL-SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 + +++ K+ + + K +I DL Sbjct: 235 N---VMIYSKNKIFDNNIPLFKVPNREVII-------------------------SDDLF 266 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 KLL ++VEG + + + R +D I+L S + G+ + ++ Sbjct: 267 KLLDYKF------VMVEGIYNLMDA-LKER-IDYIVLLVSPKI--RKGVNAL---NEIDM 313 Query: 337 NFMCVRRDYFGS 348 +F V +Y G Sbjct: 314 DFKIVHENYIGE 325 >gi|325294796|ref|YP_004281310.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065244|gb|ADY73251.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 220 Score = 177 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 13/222 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 +R ++ + V+ D + +A + + + +H +RA+ D I+VG T+ Sbjct: 1 MERPYVIIVSEVTIDGKLTLAKGVSSKEIMKLMDEEANKYLHQIRAECDGIMVGANTIRI 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R ++ +P RII + LD+ I+ T + VI V++ ++ Sbjct: 61 DNPNLTVRY--VKGKNPTRIIPVSTGDIPLDANILNTEVAPTVIAVSKKAPAEKIEKLKE 118 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K + +I + D +L + L G+ L+VEGG+ V I + L+D I L +V+ Sbjct: 119 KGVQVIVAGNEKVDFAELFSKLYEMGIRKLMVEGGSKVNWELIKNDLIDEIRLIHLPVVV 178 Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 G +PS + + K F + G+ + EY K Sbjct: 179 GGDDVPSLVSGEGFKTLDAVKRFEIKKVFKCGNQIVTEYGRK 220 >gi|114798296|ref|YP_760756.1| riboflavin biosynthesis protein RibD domain-containing protein [Hyphomonas neptunium ATCC 15444] gi|114738470|gb|ABI76595.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Hyphomonas neptunium ATCC 15444] Length = 217 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 73/215 (33%), Positives = 108/215 (50%), Gaps = 10/215 (4%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ITLKIA S D I +A S IT S+ + H +RA++DAI+VGIGT LADDP LT R Sbjct: 5 RITLKIASSLDGRIALADGTSQWITSSASRARGHQMRAENDAIMVGIGTALADDPLLTAR 64 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L P+RI+ D + +L S++ + L V+ VT A ++I C Sbjct: 65 TVPLPAKQPVRIVADSNARLPTASRLASSTDLGRVVAVTAGQGSD---ALAAAGVDIWRC 121 Query: 271 DC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 D + + G+ +LL+EGG+ +A SF+ + LVD I +R+ I+IG G+P+ Sbjct: 122 GNGVRMDAGEFVRRAEAEGLRTLLIEGGSTLAASFMRAGLVDEIAWFRAPILIGGDGLPA 181 Query: 328 ----PLEEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 L + + V + G DV Y+ Sbjct: 182 LGALGLSDLKSAARWRPVATERIGDDVLDTYVRSE 216 >gi|15617059|ref|NP_240272.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681811|ref|YP_002468197.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471513|ref|ZP_05635512.1| riboflavin deaminase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|25403627|pir||F84983 diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) [imported] - Buchnera sp. (strain APS) gi|10039124|dbj|BAB13158.1| riboflavin deaminase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624654|gb|ACL30809.1| riboflavin deaminase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 141 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 1/141 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMAGEKAQGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI + + Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRS 150 + E K + + R Sbjct: 121 LSKESKQYNKGFFKRMKTGFP 141 >gi|296537269|ref|ZP_06899158.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] gi|296262404|gb|EFH09140.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] Length = 225 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 93/226 (41%), Positives = 125/226 (55%), Gaps = 3/226 (1%) Query: 45 GVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV 104 G TA GG PHAE +AL+ AG ARGATAYVTLEPC H+GR+PPC +I G+ RVVV + Sbjct: 1 GWTAPGGRPHAETEALKRAGAAARGATAYVTLEPCCHWGRTPPCTDALIAAGVARVVVAM 60 Query: 105 DDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 DPD RV G G++ L GI + ++E E + + R +TLK+A + D Sbjct: 61 RDPDPRVDGGGIEQLRAAGIAVSTGLLEDEARAINAGFTKRLTRNLPLLTLKLASTLDGR 120 Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRII 223 I S ITG ++ H LR DA+LVG GT LADDPEL+CR+ G +R++ Sbjct: 121 IATRSGESQWITGAPARRLAHALRGTHDAVLVGSGTALADDPELSCRIPGFAPVPTVRVV 180 Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268 D +LS +++++ PV I T P L R I+ Sbjct: 181 ADARLRLSPGARMLREGG-GPVWIATRPGHPDALLAPLRAAGAEIV 225 >gi|34558306|ref|NP_908121.1| putative riboflavin-specific deaminase [Wolinella succinogenes DSM 1740] gi|34484025|emb|CAE11021.1| PUTATIVE RIBOFLAVIN-SPECIFIC DEAMINASE EC 3.5.4 [Wolinella succinogenes] Length = 344 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 74/341 (21%), Positives = 133/341 (39%), Gaps = 70/341 (20%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M AL+ + + GLT NP+V L++ + G ++ G PHAEV AL+E Sbjct: 11 EFYMELALQEAWKYQGLTLPNPAVGALLLGEHGEILSIAAHQRAGSPHAEVLALQEGYAR 70 Query: 67 ARG---------------------------ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 G T YVTLEPC+HYG++PPC++ + + Sbjct: 71 LSGNADILALHDSSQIHDYLLAHSQGIFRHCTLYVTLEPCNHYGQTPPCSELLARLKPKS 130 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V++ DP+ + + G+ L + GI V ++ E L R ++ K A Sbjct: 131 VIIGKRDPNPK-ASGGIDRLKEAGIAVHTGIKEEACHKLLLPFERLQKQGYFRFFKWAQR 189 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 + + S + VH LR + D +++ T AD+P L RL ++ +P Sbjct: 190 LNGTLSPGIISSSSS-----RAHVHALRDRIDLLVISGKTARADNPWLDARL--IEGRAP 242 Query: 220 MRIILDPHF-KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 +IL + ++ + + + +L+ L Sbjct: 243 DVLILTRSPERFPRSLRLFS---------------------VPHRRVRV----SSNLEAL 277 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 L ++ EGGA + + +S +D+ + Y + + Sbjct: 278 LDY------RCVMAEGGAELFETLFDS--MDAFLSYIAPSL 310 >gi|219682366|ref|YP_002468750.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622099|gb|ACL30255.1| riboflavin deaminase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086187|gb|ADP66269.1| riboflavin deaminase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086763|gb|ADP66844.1| riboflavin deaminase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087351|gb|ADP67431.1| riboflavin deaminase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087851|gb|ADP67930.1| riboflavin deaminase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 141 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 56/141 (39%), Positives = 85/141 (60%), Gaps = 1/141 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ T+ NP+V C+IVK+ I++G G G HAE+ AL AGE+A+G Sbjct: 1 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHKQAGKNHAEINALIMAGEKAQGG 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 TAYVTLEPC+H+G++PPC +I+ GI RVV+ DP+ ++SG G+ +L + GI + + Sbjct: 61 TAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVKTGL 120 Query: 130 MESEGKIFLHAYLTRQVEKRS 150 + E K + + R Sbjct: 121 LSKESKQYNKGFFKRMKTGFP 141 >gi|103488468|ref|YP_618029.1| riboflavin biosynthesis protein RibD [Sphingopyxis alaskensis RB2256] gi|98978545|gb|ABF54696.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase [Sphingopyxis alaskensis RB2256] Length = 325 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 125/358 (34%), Positives = 168/358 (46%), Gaps = 52/358 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M+AA +R ++ NP+V CLIVK V+ RG T GG PH E AL AG Sbjct: 8 DTDWMAAAAGLARRGRPASAPNPNVGCLIVKADQVVARGWTQAGGRPHGEAVALAAAGVA 67 Query: 67 ARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 ARGATAYVTLEPC H R P C+ +I G+ RVVV V DPD R G G+ L GI Sbjct: 68 ARGATAYVTLEPCVHASARGPACSDLLIRAGVARVVVAVQDPDPRTDGAGIARLRAAGIE 127 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVH 184 + ++ ++ + + + TRQ R +TLK+A S D I A S ITG ++ H Sbjct: 128 VTVDVLPADARAAMAPWWTRQTMGRPFVTLKLATSLDGRIAPADGSSRWITGDRARAHGH 187 Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 L RA +AILVG GT AD P L RL GL++ SP + +L A Sbjct: 188 LERASHEAILVGRGTFEADAPRLDVRLPGLEDRSPKKFVLTRGA-----------APEGW 236 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + + GV SLLVEGGA A +F+ Sbjct: 237 TAVASPDAI-------------------------------EGVDSLLVEGGAGAAAAFLA 265 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK------NFMCVRRDYFGSDVCLEYIG 356 + VD ++LYR+ I+IG+G + L + L + + GSD Y Sbjct: 266 ADRVDRLLLYRAPILIGDG--KAALGDIGLTRIAAAHGRWRLADSRMLGSDRLDVYER 321 >gi|301055607|ref|YP_003793818.1| riboflavin biosynthesis protein contains N-terminal domain of RibD [Bacillus anthracis CI] gi|300377776|gb|ADK06680.1| riboflavin biosynthesis protein contains N-terminal domain of RibD [Bacillus cereus biovar anthracis str. CI] Length = 166 Score = 175 bits (444), Expect = 1e-41, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 84/137 (61%), Gaps = 1/137 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL AG++ Sbjct: 3 DQEYMRIALQLAEGTCGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMAGDK 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 A+GAT YVTLEPCSH+G++PPC + +I+ ++RVV+ D + VSG G + L + GI + Sbjct: 63 AKGATVYVTLEPCSHFGKTPPCCELLIKKEVKRVVIATLDCNPLVSGNGKRKLEEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYL 142 ++E+E + + Sbjct: 123 TTGVLEAEAVLLNRYFF 139 >gi|21226928|ref|NP_632850.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina mazei Go1] gi|20905237|gb|AAM30522.1| conserved protein [Methanosarcina mazei Go1] Length = 228 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 99/221 (44%), Gaps = 13/221 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R I + A+S D + V I+G + ++ LRA +DAI+VGIGTVLADDP Sbjct: 1 MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAHADAIMVGIGTVLADDPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R + +P+R+++D + L++ I K +I V+ + Sbjct: 61 LTVKSPERKAARKAAGKSENPVRVVVDSSARTPLNADIFKKGEGLRIIAVSNSAPEEKIR 120 Query: 259 AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 +K + I DL +L L G+ SL+VEGGA + +++ LVD + + Sbjct: 121 MLEEKALVIKTGAFRVDLTELAAKLKEMGINSLMVEGGATLNWGMLSAGLVDEVYTFVGN 180 Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 ++IG P+ + +N + + L++ Sbjct: 181 LIIGGKTAPTFTDGEGFTENELLGLELSSAEKIEDGILLKW 221 >gi|213615891|ref|ZP_03371717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 198 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 54/199 (27%), Positives = 86/199 (43%), Gaps = 17/199 (8%) Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE-----------HSPMR 221 IT ++ V LRAQS AIL TVLADDP LT R L P+R Sbjct: 1 WITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVR 60 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 I++D +++ +I++ I T+ D + R ++ + DL L+ Sbjct: 61 IVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQ 118 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP----SPLEEGYLEKN 337 L + + S+ VE G +A + + + LVD +I+Y + ++G LE+ Sbjct: 119 LGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQ 178 Query: 338 FMCVRRDYFGSDVCLEYIG 356 F + G DVCL + Sbjct: 179 FTFSEIRHVGPDVCLHMVS 197 >gi|307069511|ref|YP_003877988.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia insecticola CARI] gi|306482771|gb|ADM89642.1| riboflavin biosynthesis protein RibD [Candidatus Zinderia insecticola CARI] Length = 346 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 153/318 (48%), Gaps = 14/318 (4%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ S+ V +S NPSV C I K+ ++ G T + G HAE+ AL+ + + Sbjct: 1 MLKAIYLSKKAVFFSSPNPSVGCYIKKN--IL--GYTKFKGYNHAEINALKN-IKNNKKI 55 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRM 129 Y+TLEPC++ G + C +++I I ++ +C D + + ++ L K I I + Sbjct: 56 NIYLTLEPCNYLGLTNSCLEYLININIYKIFICKLDNNKNIYNNSIKILKLKNIKINLGL 115 Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 + K Y + K+ I LKIA S DN I + S IT IS+ L R + Sbjct: 116 LNKIYKKINKGYFYKVKNKKPLIRLKIASSIDNKICLKNKKSKWITNKISRINNQLWRIK 175 Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 S AI+ GIGT+L D+ + R N + I++D K+SL+S +K +II T Sbjct: 176 SCAIITGIGTILKDNSFINIR-NFKKIKDIKNILIDTKLKISLNSNYLKNNY---IIIFT 231 Query: 250 ENDDPVLALAFRKKNINIIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + +K I I + K+++ + + + E G ++ ++ I+ Sbjct: 232 NSKNKKKIRKLKKLGIKIFKIKLNNKKLNFKRIIEKISFLKINEIQFESGFSINNTLISL 291 Query: 306 RLVDSIILYRSQIVIGEG 323 ++ I++Y S I++G+ Sbjct: 292 NKINEILIYLSPIILGKS 309 >gi|261350765|ref|ZP_05976182.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanobrevibacter smithii DSM 2374] gi|288860520|gb|EFC92818.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanobrevibacter smithii DSM 2374] Length = 223 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 17/219 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I S I+G +VH LR + D I+VGI TV+AD+P LT Sbjct: 3 PYVILNAAMTLDGKIATKTGSSN-ISGEKDLKRVHELRREVDGIMVGINTVIADNPRLTV 61 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--------DPVLALAF 260 ++ E +P+R+++D + + ++I T A II ND D Sbjct: 62 HKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLDFIVSDRYANFTK 119 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 R + DLK L+ L G+ +L++EGG+ + S I L+D I + + V+ Sbjct: 120 RGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVV 179 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEY 354 G + + + VR + F G D+ L+Y Sbjct: 180 GGKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218 >gi|148642125|ref|YP_001272638.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanobrevibacter smithii ATCC 35061] gi|222444696|ref|ZP_03607211.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii DSM 2375] gi|148551142|gb|ABQ86270.1| riboflavin-specific deaminase [Methanobrevibacter smithii ATCC 35061] gi|222434261|gb|EEE41426.1| hypothetical protein METSMIALI_00309 [Methanobrevibacter smithii DSM 2375] Length = 223 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 17/219 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A++ D I S I+G +VH LR + D I+VGI TV+AD+P LT Sbjct: 3 PYVILNAAMTLDGKIATKTGSSN-ISGEKDLKRVHELRREVDGIMVGINTVIADNPRLTV 61 Query: 210 R-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--------DPVLALAF 260 ++ E +P+R+++D + + ++I T A II ND D Sbjct: 62 HKIDANPEDNPVRVVVDSKCRTPIAARI--TNKDAKTIIAGANDYKLEFIVSDRYANFTK 119 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 R + DLK L+ L G+ +L++EGG+ + S I L+D I + + V+ Sbjct: 120 RGIDFFFSGDKRVDLKDLMNYLYESGIKTLMLEGGSTLNFSMIKEGLIDEIRICVAPFVV 179 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEY 354 G + + + VR + F G D+ L+Y Sbjct: 180 GGKDSHTLFDGEGFDTMDEGVRLELFDSFKLGDDLILQY 218 >gi|254418857|ref|ZP_05032581.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Brevundimonas sp. BAL3] gi|196185034|gb|EDX80010.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Brevundimonas sp. BAL3] Length = 208 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 69/211 (32%), Positives = 99/211 (46%), Gaps = 8/211 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TLK+A S D I A S ITG ++ + H LRA DAILVG+ TVL DDPELT Sbjct: 1 MRVTLKLATSLDGRIATATGESRWITGEAARLEGHRLRAGHDAILVGVETVLKDDPELTA 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL G P+R++LD + +K+ A +I+ PV A R+ Sbjct: 61 RLPGRSVDQPLRVVLDSRLRTPATAKL---AGENTLILTAVEPQPVGAAQVRRVEAE-DE 116 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326 + +L L GV S+L+EGG VA +F+ + VD + +R+ I++G G P Sbjct: 117 DGRPAIPAVLKALKAAGVDSVLIEGGGQVAAAFLRAGAVDRLEWFRAPILLGGEGRPCVA 176 Query: 327 -SPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 L + F + G D+ Y Sbjct: 177 ALALAKLADAPKFRRLGVMPVGDDLWERYER 207 >gi|73668036|ref|YP_304051.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina barkeri str. Fusaro] gi|72395198|gb|AAZ69471.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanosarcina barkeri str. Fusaro] Length = 232 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 9/197 (4%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + + + A+S D + V I+G + +V LRAQ+DA++VGIGTVL+DDP Sbjct: 1 MDKPFVFINSAMSADGKLSTKERKQVRISGKLDFERVDELRAQADAVMVGIGTVLSDDPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R + +P+RII+D + LD+ I K +I V+ + Sbjct: 61 LTVKSPKRKAARKAAGKNENPVRIIVDSSARTPLDADIFKKGDGLRIIAVSTSAPAEKIE 120 Query: 259 AFRKKNINI-IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 KK + I + DL++L+ +L G+ L+VEGGA + +++ LVD I + Sbjct: 121 KLEKKALVIKAGTEKVDLQELVRVLKKMGINILMVEGGATLNWGMLSAGLVDEIYTFVGN 180 Query: 318 IVIGEGGIPSPLEEGYL 334 +IG P+ + Sbjct: 181 FIIGGATAPTFTDGKGF 197 >gi|121612362|ref|YP_001001265.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] gi|121504161|gb|EAQ72749.2| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] Length = 336 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 133 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG +F +D ++++S + E + PL NF Sbjct: 279 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 321 LYRNFLGSDTYGIY 334 >gi|86152942|ref|ZP_01071147.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni HB93-13] gi|167006160|ref|ZP_02271918.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 81-176] gi|85843827|gb|EAQ61037.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni HB93-13] Length = 326 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ A+ A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGLAHAELNAITHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG +F +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKTF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|294507525|ref|YP_003571583.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber M8] gi|294343853|emb|CBH24631.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber M8] Length = 459 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 61/224 (27%), Positives = 99/224 (44%), Gaps = 14/224 (6%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + + +TL A S D I +PI+ + H LRA D ILVGIGTVL Sbjct: 228 RYFAEKGQPFVTLTYAQSLDGSIASKSGTPLPISSEQALRFTHQLRALHDGILVGIGTVL 287 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 ADDP LT R N P+ I+LD + D++++ P+I+ + N DP Sbjct: 288 ADDPRLTVRHNDGTH--PVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADPDRKERLE 345 Query: 262 KKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 +I C ++ LL L R +S++VEGG ++ SF+ + +I+ + Sbjct: 346 AHGGTVIELSCGPEGGICVRTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQRVIVTVA 405 Query: 317 QIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353 + +G S L + +++ ++G D+ LE Sbjct: 406 PMFVGGTAALSSLAPEEQDTHARSDFPRLDNIQQRWYGEDLVLE 449 >gi|147921689|ref|YP_684491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured methanogenic archaeon RC-I] gi|110619887|emb|CAJ35165.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase (riboflavin-specific deaminase) [uncultured methanogenic archaeon RC-I] Length = 226 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 9/208 (4%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R + + A+S D I V I+G ++V LRA SDA++VGIGTVLADDP Sbjct: 1 MLDRPYTFINSAMSADGKISTKKRKQVKISGKTDFDRVDELRAGSDAVMVGIGTVLADDP 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 LT R+ ++ +P R+++D + + I K +++V++ Sbjct: 61 SLTVKSEERRKRRVAEGKDENPARVVVDSQARTPPTADIFKKGTGKRIVVVSQAAPADRV 120 Query: 258 LAFRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 A ++K I + D DL+++ L RG+ L++EGGA + ++ ++ RLVD I ++ Sbjct: 121 AALKEKAEIIVCGKDEVDLEQMSVELKKRGINRLMIEGGATLNYAMVSRRLVDEISVFVG 180 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRD 344 ++IG P+ ++ + + V Sbjct: 181 NLIIGGKDAPTFMDGPGIAERSEAVELR 208 >gi|327400817|ref|YP_004341656.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus veneficus SNP6] gi|327316325|gb|AEA46941.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Archaeoglobus veneficus SNP6] Length = 226 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 8/213 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + +A S D I + I+ +V LRA+SDAI+VGIGTVL+DDP LT Sbjct: 7 PHVFINVAASADGRISDESRRQIRISCEEDMQRVDRLRAESDAIVVGIGTVLSDDPRLTV 66 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R+ + +P+R+++D + L+++++ V + D+ +A Sbjct: 67 KSQALREERVKNGRTPNPLRVVVDSRARTPLNARVLDGEAETLVAVSDLADEERVAALRE 126 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 K ++ + + DL+ L+ L GV ++VEGGA + HS I LVD I++Y ++IG Sbjct: 127 KASVFVAGQEKVDLRALMEYLYSIGVRRVMVEGGARLNHSLIAEGLVDEIMVYYGGMIIG 186 Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G + VR GS V + Sbjct: 187 NGPCIADGPSFKPPVPLELVRVSRLGSGVLAVW 219 >gi|91774264|ref|YP_566956.1| hypothetical protein Mbur_2352 [Methanococcoides burtonii DSM 6242] gi|91713279|gb|ABE53206.1| 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate reductase [Methanococcoides burtonii DSM 6242] Length = 226 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 69/221 (31%), Positives = 107/221 (48%), Gaps = 13/221 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + A+S D I V I+G I +++ LRA SDAI+VGIGTVLADDP Sbjct: 1 MNRPFTFINSAMSADGKISTKERKQVRISGDIDFDRMDELRASSDAIMVGIGTVLADDPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R N + P+RII+D + L++ I K ++ V+ + Sbjct: 61 LTVKSRYRRDTRKNKGLDEDPVRIIVDSKARTPLNADIFKKGTGMRIVAVSSSAPKEKVD 120 Query: 259 AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A KK I D + DL L+ L G+ L+VEGGA + +++ LVD + + Sbjct: 121 ALSKKATIITAGDEKVDLVLLMGQLSSMGIQRLMVEGGATLNWGLLSNGLVDEVFSFIGN 180 Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRR---DYFGSDVCLEY 354 I IG P+ ++ EG+L+ +F+ + + V L++ Sbjct: 181 IFIGGNSSPTLVDGEGFLKGDFLPLELISSETIEEGVLLKW 221 >gi|148925766|ref|ZP_01809454.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845776|gb|EDK22867.1| putative riboflavin-specific deaminase [Campylobacter jejuni subsp. jejuni CG8486] Length = 336 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 152/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 133 ISVKDGN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 242 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG +F + +D ++++S + E + PL NF Sbjct: 279 ---------LMYEGGENFLKTFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 321 LYRNFLGSDTYGIY 334 >gi|288931633|ref|YP_003435693.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Ferroglobus placidus DSM 10642] gi|288893881|gb|ADC65418.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Ferroglobus placidus DSM 10642] Length = 225 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 97/222 (43%), Gaps = 10/222 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + +A S D I + I+ +V LRA+SDAI+VGIGTVLAD+P+LT Sbjct: 3 PFVFVNVAASVDGKISNERRVQLRISSKEDMERVDKLRAESDAIMVGIGTVLADNPKLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R+ + +P+R+++D ++ D+ I+ + + + D L Sbjct: 63 KSDELRKKRVLEGKPENPLRVVVDSKARIPEDALILNDEAETLLAVSKKADLEKLKKLQE 122 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 K I + + DL +L+ L GV L+VEGG + S LVD I +Y ++I Sbjct: 123 KAMIFVAGEERVDLSELMEFLYHIGVRKLMVEGGGELIASLFREGLVDEIYVYYGNVIIA 182 Query: 322 EGGIPSPLEEGYLEK--NFMCVRRDYFGSDVCLEYIGKNLCL 361 P+ + L++ + G + + K Sbjct: 183 GKNSPTIADGKSLDEPAELELLEFKKLGGGILTRWRVKRKRF 224 >gi|116753917|ref|YP_843035.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanosaeta thermophila PT] gi|116665368|gb|ABK14395.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanosaeta thermophila PT] Length = 222 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 17/219 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + A+S D I V I+G +V LRA+SDA++VG+GTV+ADDP L Sbjct: 3 PYVLINSAMSADGKISSFLRRQVRISGSEDLLRVERLRAESDAVMVGLGTVIADDPTLRV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 RL +P+RI+ D + +++++ I+ P L Sbjct: 63 KSEALRSWRLERGVPENPLRIVADSRARTPPEARVLGPGC----IVAVSRYAPEDRLKEL 118 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + I C D DL++LL +L RGV L+VEGG + S I LVD I ++ +V Sbjct: 119 SERCEIAICGEDRVDLRELLEMLYRRGVRRLMVEGGGTLNWSLIEQGLVDEICVFVGPMV 178 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRR---DYFGSDVCLEYI 355 IG P+ ++ +NF + + + L++ Sbjct: 179 IGGQDAPTLVDGRGFPENFQRLELESAERIDDGLLLKWR 217 >gi|83815284|ref|YP_445633.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber DSM 13855] gi|83756678|gb|ABC44791.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Salinibacter ruber DSM 13855] Length = 455 Score = 173 bits (439), Expect = 4e-41, Method: Composition-based stats. Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 14/224 (6%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + R +TL A S D I +PI+ + H LRA D ILVGIGTVL Sbjct: 224 RYFAEKGRPFVTLTYAQSLDGSIASTSGTPLPISSEQALRFTHQLRALHDGILVGIGTVL 283 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 ADDP LT R N P+ I+LD + D++++ P+I+ + N DP Sbjct: 284 ADDPRLTVRHNDGTH--PVPIVLDSSLRFPSDAQLLAGDGPDPLIVTSPNADPDRKERLE 341 Query: 262 KKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 +I C +K LL L R +S++VEGG ++ SF+ + +I+ + Sbjct: 342 AHGGTVIELSCGPEGGICVKTLLRTLGERDFSSVMVEGGTSILTSFLRRQCAQRVIVTVA 401 Query: 317 QIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCLE 353 + +G S L + +++ ++G D+ LE Sbjct: 402 PMFVGGTAALSSLAPEDQDTHARSDFPRLDNIQQRWYGEDLVLE 445 >gi|268678892|ref|YP_003303323.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum DSM 6946] gi|268616923|gb|ACZ11288.1| riboflavin biosynthesis protein RibD [Sulfurospirillum deleyianum DSM 6946] Length = 338 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 93/382 (24%), Positives = 150/382 (39%), Gaps = 76/382 (19%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 V++ D M AL + + LT NP+V ++ D G ++G G G PHAEV AL+ Sbjct: 2 VNALDNALMQKALDAAWHYQVLTFPNPAVGAVVSNDAGEILGMGAHRKAGTPHAEVLALK 61 Query: 62 EAGEEARGAT---------------------------AYVTLEPCSHYGRSPPCAQFIIE 94 EA T +VTLEPC H+G++PPC+ I Sbjct: 62 EAYLTLTHDTRIEALSDSMALHLFLKENHQHLFSNLSLHVTLEPCHHFGKTPPCSSLIEA 121 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 GI+RVV+ D +R + G +L +G+ V E L T + +K I Sbjct: 122 LGIKRVVIGSYDESLR-AKGGGAYLQSRGVDVSFGCLKEACDTLLTPFTCKEKKEPFIFY 180 Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 K+A+S +++ A G+ IT S+ VH LR D +++G TV D P L RL Sbjct: 181 KLALSANSV---ATGGT--ITSLESRTMVHRLRDCCDLMVIGGNTVRVDRPTLDARL--C 233 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 + +P +I + + I + Sbjct: 234 EGKAPDILIYSHENTFDRTIPLFQCPSRKVFI-------------------------EKS 268 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 L+++ R +++EGGA++ + V+ +++RS + + G EE L Sbjct: 269 LERI------REYRMVMIEGGASMLKAMEEQ--VEWYLIFRSPHI--KEG-----EEIKL 313 Query: 335 EKNFMCVRRDYFGSDVCLEYIG 356 + + G D Y Sbjct: 314 PQGLKEIFSCEIGEDRMSWYRR 335 >gi|126179969|ref|YP_001047934.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] gi|125862763|gb|ABN57952.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanoculleus marisnigri JR1] Length = 226 Score = 173 bits (438), Expect = 5e-41, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 14/219 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + IA+S D I V I+G +V ++A+SDAI+VGIGTVLAD+P LT Sbjct: 3 PFVFVNIAMSADGKISTRERRQVRISGNEDYLRVDRIKAESDAIMVGIGTVLADNPSLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R ++ +P+RI++D + D+ I+ ++ V++ A R Sbjct: 63 KSPELRAERRAAGKDENPIRIVVDGRGRTPPDADILHKGSGKRIVAVSKKAPKKAVEALR 122 Query: 262 KKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ ++ + DL+ LL L +GV L+VEGG + + LVD + + IVI Sbjct: 123 EQAAVVVGGEETVDLRGLLEELHRQGVRRLMVEGGGTLIWTLFEQGLVDELQAFVGNIVI 182 Query: 321 GEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 G P+P + + + F + + + Sbjct: 183 GGKEAPTPTDGAGFLREEDFPRLRIIEAVRFDDGLLVRW 221 >gi|167577925|ref|ZP_02370799.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis TXDOH] Length = 195 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 67/193 (34%), Positives = 101/193 (52%), Gaps = 3/193 (1%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL Sbjct: 3 TFSDIDRMHMAHALRLAEQGLYTTHPNPRVGCVIARGAQALGAGWHRRAGEPHAEVHALR 62 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EAGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP +V+GRG L+ Sbjct: 63 EAGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPFEQVAGRGAARLAD 122 Query: 122 KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG--FI 178 GI+V+ ++E++ + + +R R +++ D + Sbjct: 123 AGIVVEQGLLEAQARELNIGFFSRIERGRPWTRATLSLPIDGPPAPDSADLAALDAAPSE 182 Query: 179 SKNQVHLLRAQSD 191 +++ + RA+S Sbjct: 183 ARDDLRHWRARSS 195 >gi|57238634|ref|YP_179765.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni RM1221] gi|57167438|gb|AAW36217.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni RM1221] gi|315059073|gb|ADT73402.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni S3] Length = 326 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|224419196|ref|ZP_03657202.1| putative riboflavin-specific deaminase [Helicobacter canadensis MIT 98-5491] gi|253828126|ref|ZP_04871011.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|313142700|ref|ZP_07804893.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|253511532|gb|EES90191.1| Riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] gi|313131731|gb|EFR49348.1| riboflavin biosynthesis protein RibD [Helicobacter canadensis MIT 98-5491] Length = 346 Score = 172 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 72/386 (18%), Positives = 138/386 (35%), Gaps = 73/386 (18%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++ A++ + T NP+V LI+ +G ++ G PHAEV AL+EA Sbjct: 3 DDNFYLELAIKEAWKTQCQTLPNPAVGALILDHNGRILALQAHQEAGKPHAEVLALKEAY 62 Query: 65 EEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 AT YVTLEPC H G++P CA + GI Sbjct: 63 FNLTQDSNILPLEQSIQIHEYLKQKAHSLFHNATLYVTLEPCMHEGKTPSCAALLESLGI 122 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 +++++ DP+ + + G ++L Q+G + + E++ + + + K Sbjct: 123 KKLIIGTKDPNPK-AQGGAEYLQQRGCKIIKAWENKELQKSSILANDLLLPFNSLQKKGN 181 Query: 158 VSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 I+ ++ +H LR + D +++ +VL D+P L R N LQ Sbjct: 182 FILFKYACRLNGSINGGQISSKETQIFMHNLRCKLDELVISGKSVLIDNPILDSRFNSLQ 241 Query: 216 -EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 + +P IL + + I+ + + Sbjct: 242 SQKNPNITILTRKNDFPQTAPLFSIPNRQVRILHSIPNFSGF------------------ 283 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 ++ EGG + + + +D ++++ S + + + Sbjct: 284 ---------------IMCEGGINLLQNLLPQ--IDMLLVFLSPTL------STYDLAPHF 320 Query: 335 EKNFMCVRRDYFGSDVCLEYIGKNLC 360 NF + +D+ L + K C Sbjct: 321 NANFKLLHSQPIRNDLALWLLPKKEC 346 >gi|152993547|ref|YP_001359268.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1] gi|151425408|dbj|BAF72911.1| riboflavin biosynthesis protein RibG [Sulfurovum sp. NBC37-1] Length = 330 Score = 172 bits (436), Expect = 9e-41, Method: Composition-based stats. Identities = 76/340 (22%), Positives = 128/340 (37%), Gaps = 73/340 (21%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL + + LT NP+V ++ DG ++ G HAEV AL +A E Sbjct: 3 DEFYMQLALDKAWEYQLLTYPNPAVGAVVTLDGTILAVEAHKKAGTSHAEVLALLKAYET 62 Query: 67 ARGAT---------------------------AYVTLEPCSHYGRSPPCAQFIIECGIRR 99 +T YVTLEPCSH GR+P CA + +++ Sbjct: 63 LSQSTVDFDRMDAQKAHNFLHTIPKDFFSECSIYVTLEPCSHEGRTPACATLLEALNLKK 122 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V++ DP G G+ L ++E + + +L Q + K+A + Sbjct: 123 VIIGTKDPIEGHGG-GMDRLKNN---TSGVLEEACQALIEPFLIWQERAF--VLFKLAQT 176 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 + I G ++ S VH LR + D +L+G TV D P L CR G P Sbjct: 177 TNGRI-----GGGYLSSKSSLKHVHQLREKCDRLLIGGNTVRTDRPTLDCRFTGGTV--P 229 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 +I + + + + VT+ + + +F Sbjct: 230 DVVIYSKKDDIDREMPLFTVKNR--TVTVTDKLNFLEKPSF------------------- 268 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +LVEGG + ++ +D +++Y++ + Sbjct: 269 ----------VLVEGGEGMLNALKEK--IDWMLIYQTPKL 296 >gi|313681592|ref|YP_004059330.1| riboflavin biosynthesis protein ribd [Sulfuricurvum kujiense DSM 16994] gi|313154452|gb|ADR33130.1| riboflavin biosynthesis protein RibD [Sulfuricurvum kujiense DSM 16994] Length = 336 Score = 172 bits (435), Expect = 1e-40, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 130/361 (36%), Gaps = 71/361 (19%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACL-IVKDGIVIGRGVTAYGGCPHAEVQA 59 M ++ M+ AL + + LT NP+V + + +G V+ G G PHAEV A Sbjct: 1 MNTTAA-IHAMTLALNAAWEYQLLTFPNPAVGAVCLSDNGTVVSVGTHKRAGGPHAEVYA 59 Query: 60 LEEAGEEARGATAY---------------------------VTLEPCSHYGRSPPCAQFI 92 L +A G T VTLEPCSH G++P CA I Sbjct: 60 LRDAYTLLSGDTTIAGCDDSHRIHDYLRTRHNGIFHTVSMAVTLEPCSHSGKTPSCALLI 119 Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152 + GI+RV + V DP+ + G LS G + E L R + + Sbjct: 120 RDLGIKRVYISVKDPNP-AAAGGASLLSDAGAECVFGIMEEEGEKLLEPFIRWQKS-PFV 177 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 K A D I I+ S+ +H LR + D I++G TV D P L RL Sbjct: 178 FFKWAQRLDGTIDNGT-----ISSQSSREHMHALRDRCDLIVIGGNTVRHDRPTLDARL- 231 Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272 + +P +I + + + E+ Sbjct: 232 -VDGKAPDVLIYSQMGEFDQSIPLFSVPDRK---VYVESS-------------------- 267 Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 L L + +++EGG ++ + + D + Y + + G P++E Sbjct: 268 ------LERLKEYSL--VMIEGGTSMFQA--SQNTCDWYLCYLAPKLGGGLQNMGPIQED 317 Query: 333 Y 333 + Sbjct: 318 F 318 >gi|283957008|ref|ZP_06374480.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 1336] gi|283791509|gb|EFC30306.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Campylobacter jejuni subsp. jejuni 1336] Length = 326 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 3 KFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNDLSRTYTHKIRAVIDLLVVGGETIRKDHPILDARL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|330814131|ref|YP_004358370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter sp. IMCC9063] gi|327487226|gb|AEA81631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Pelagibacter sp. IMCC9063] Length = 355 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 81/312 (25%), Positives = 154/312 (49%), Gaps = 10/312 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 F AL +R + +T NPSV C++ + ++ GVT+ G PHAE AL + ++ Sbjct: 11 KYFSELALSLARINKFITKENPSVGCVVTDFNNNILSSGVTSKNGRPHAENNALIKLNKK 70 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 +VTLEPC+HYG++PPC + I+ ++++ D + V+G GL++L + I + Sbjct: 71 I-TKKIFVTLEPCNHYGKTPPCTKKIVNFNVKQLHCNQIDKNPAVNGSGLKFLKENKIKI 129 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 ++ + Y + K ++T K+A++++ ++G T S HLL Sbjct: 130 KESNINKNFYSNYNYSVK--NKLPYVTAKLAITKNFSTVVSGKKY--FTNSKSLKFAHLL 185 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 R +D+IL+G T+L D P+L CR+ GL +HSP ++ + + K + + V+ Sbjct: 186 RYMNDSILIGQKTLLKDYPKLNCRIEGLSQHSPKIFFINRNLN--FNKKHLLLYPRSTVV 243 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + D ++ + + I + + +++L + LL+EGG+ + F Sbjct: 244 FHSSKDSKKISKYKKYFFLEKIEDNTGNFSPEEILKRIYKHKCRRLLIEGGSETVNIFAK 303 Query: 305 SRLVDSIILYRS 316 ++ V+ +S Sbjct: 304 NKYVNKFFFIQS 315 >gi|315928823|gb|EFV08089.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 305] Length = 335 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 84/373 (22%), Positives = 147/373 (39%), Gaps = 78/373 (20%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 + V D + +++ G ++L ++GI V+ + E L L Q + L ++++ Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPLKWQKGQFKLFKLALSMNGS 191 Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 PF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPNL 242 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 IL + D I P+ + R+ I Sbjct: 243 CILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF-------- 277 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 278 --------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKPL 320 Query: 342 RRDYFGSDVCLEY 354 R++ GSD Y Sbjct: 321 YRNFLGSDTYGIY 333 >gi|294496137|ref|YP_003542630.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanohalophilus mahii DSM 5219] gi|292667136|gb|ADE36985.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanohalophilus mahii DSM 5219] Length = 226 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 69/225 (30%), Positives = 112/225 (49%), Gaps = 13/225 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + A+S D I V I+G + ++ LRA SDA++VGIGTVLADDP Sbjct: 1 MPTPFTFINAAMSIDGKISTRQRRQVRISGDVDFERMDELRASSDAVMVGIGTVLADDPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT RL + +P+RI++D ++ ++ I + +I V+E+ Sbjct: 61 LTVKSDERRAKRLAKGLDENPVRIVVDSKARIPTNADIFRKGAGKIIIAVSESAAFDRVE 120 Query: 259 AFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + RKK + I+ + DL +LL+IL G+ L+VEGGA + + + LVD I + Sbjct: 121 SLRKKAMVIMAGGNQVDLPELLSILDEMGIHRLMVEGGAGLNWGLVKNGLVDEIYSFIGN 180 Query: 318 IVIGEGGIPSPLE-EGYLEKNF---MCVRRDYFGSDVCLEYIGKN 358 ++IG G P+ ++ EG+ E N + + V L++ KN Sbjct: 181 LIIGGGTAPTLIDGEGFDEANMPTCSLISAEKMEGGVLLKWKLKN 225 >gi|218563211|ref|YP_002344991.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|112360918|emb|CAL35719.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926817|gb|ADC29169.1| riboflavin-specific deaminase/reductase [Campylobacter jejuni subsp. jejuni IA3902] Length = 336 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 242 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + E + PL NF Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 321 LYRNFLGSDTYGIY 334 >gi|86149383|ref|ZP_01067614.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni CF93-6] gi|88596073|ref|ZP_01099310.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 84-25] gi|85840165|gb|EAQ57423.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190914|gb|EAQ94886.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni 84-25] Length = 326 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|205355636|ref|ZP_03222406.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni CG8421] gi|205346413|gb|EDZ33046.1| putative riboflavin specific deaminase [Campylobacter jejuni subsp. jejuni CG8421] Length = 326 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 150/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 63 LRPEISLPKEVNALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 123 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 182 SPF-------GKIVSNKLSRTYAHKIRAVIDLLVVGGETIRKDRPILDTRL--CKAKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F +D ++++S + E + PL NF Sbjct: 269 ---------LMYEGGENFLKIF-KDG-IDMFLIFQSSSLNDEKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|330991420|ref|ZP_08315371.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1] gi|329761439|gb|EGG77932.1| Riboflavin biosynthesis protein ribD [Gluconacetobacter sp. SXCC-1] Length = 339 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 35/317 (11%) Query: 12 SAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 AA+ + HVG+T+ NP V C ++ +DG ++ G G PHAE+QA+ + G Sbjct: 15 RAAVDEAARHVGVTAPNPPVGCALLDRDGTILAVGGHHRAGTPHAEIQAINQCRARGLLD 74 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG---- 123 R TA VTLEPC+H GR+ PC+ + +R V + + DP+ V+G G +L +G Sbjct: 75 RAHTAVVTLEPCNHTGRTGPCSHALAATPVRDVWIGLRDPNPHVAGGGAGYLRSQGRSVH 134 Query: 124 IIVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 ++ ++ + L + + IT+K AV + + T S Sbjct: 135 VLQPTGPQAAPRDLCRSLLAPFAHFARTGQPWITVKQAVDATGSMLPPPGRTT-FTAATS 193 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H LR +DA++ T+ AD P L R + D + +++ Sbjct: 194 LDLAHRLRRATDAVITTGRTIRADRPGLDVRR-----------VPDHTGRAP---RVLA- 238 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 I T + A +N C D+ L +L GVT +VE G A+ Sbjct: 239 -------ICTRTGEVDDAYLTAARNRGFDVRLCTDIAALPDLLGRAGVTWAMVEAGPALL 291 Query: 300 HSFINSRLVDSIILYRS 316 L + + Sbjct: 292 AELRARGLWHDWLTITA 308 >gi|255602376|ref|XP_002537841.1| riboflavin-specific deaminase, putative [Ricinus communis] gi|223514866|gb|EEF24541.1| riboflavin-specific deaminase, putative [Ricinus communis] Length = 110 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 57/109 (52%), Positives = 76/109 (69%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++S D +M+ ALR + + T+ NP V C+IVK+G ++G G G PHAEV AL Sbjct: 1 MQMTSQDIEWMTRALRLAARGLYTTTPNPRVGCVIVKNGQLVGEGAHLKAGEPHAEVHAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AGE+ARGATAYVTLEPCSH+GR+PPCA ++ G+ RVVV + DP+ Sbjct: 61 RAAGEQARGATAYVTLEPCSHFGRTPPCADALVNAGVSRVVVAMQDPNP 109 >gi|319789432|ref|YP_004151065.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermovibrio ammonificans HB-1] gi|317113934|gb|ADU96424.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermovibrio ammonificans HB-1] Length = 220 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 56/221 (25%), Positives = 103/221 (46%), Gaps = 13/221 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 +R ++ + V+ D + +A + + + +H +RA+ D I+VG TV Sbjct: 1 MERPYVLIVSEVTIDGKLTLAKGVSSKEIMKLMDDEANRYLHAVRAECDGIMVGANTVRI 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R ++ +P+R+I + LD+ ++ T + +I V+E AF++ Sbjct: 61 DNPNLTVRY--VEGKNPIRVIPTSTGDIPLDANVLNTEVAPTIIAVSERAPKEKVEAFKE 118 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + ++ + + LL +L RG+ L+VEGG+AV I + LVD I L +++ Sbjct: 119 RGAEVLVAGKEKIEFPLLLKLLKERGIEKLMVEGGSAVNWELIKNDLVDEIRLIHLPVIV 178 Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIG 356 G +PS + + K F R G+ V E+ Sbjct: 179 GGDDVPSLVSGEGFKTLSAVKRFKIKRVFRCGNQVITEFER 219 >gi|307596329|ref|YP_003902646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Vulcanisaeta distributa DSM 14429] gi|307551530|gb|ADN51595.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Vulcanisaeta distributa DSM 14429] Length = 219 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 14/221 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + ++ + A S D I ++ ++H +RA DAI+VG TV+ DDP Sbjct: 1 MPKPYVIIVSAASIDGRIASKTG-YSRLSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT R +P+R+++D ++ L +K++ +I+ TE D ++ Sbjct: 60 LTPRYV-KAIRNPIRVVIDGKLRIPLTAKVVTNKEAPTIIVTTEQADRNKIAQLMNMSVE 118 Query: 267 IIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + + +LK +L L + V +LVEGG + I LVD I L S V G G Sbjct: 119 VWVMGKERINLKDVLERLFMEKNVKRVLVEGGGHLNWELIKEGLVDEIRLTISPYVFGAG 178 Query: 324 -------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 G P+ +E L V G +V L YI + Sbjct: 179 TSFIEGEGYPTTIEGPRL--RLKSVNICECGQEVILNYIVE 217 >gi|283953762|ref|ZP_06371293.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni subsp. jejuni 414] gi|283794803|gb|EFC33541.1| riboflavin biosynthesis protein RibD, putative [Campylobacter jejuni subsp. jejuni 414] Length = 326 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 86/374 (22%), Positives = 150/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+G ++ G HAE+ + A + Sbjct: 3 EFYMNLALNEAWKYQFLTYPNPAVGCVILDKNGKILAIKAHEKAGFAHAELNTIAHAFKN 62 Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + + A+VTLEPCSH G++PPCA+ + G ++V Sbjct: 63 LNPEISLPKEANAMHKFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSDLGFKKVF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +V+ G +L ++GI + ++E EGK L +L Q E+ L ++++ Sbjct: 123 ISVKDEN-KVASGGADFLKKQGIEVEFGILEEEGKKLLKPFLKWQKEQFKLFKLALSMNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + P Sbjct: 182 SPF-------GKIVSNELSRTYAHKIRAVIDLLVVGGETIRKDRPILDARL--CKAKVPD 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 233 LCILSRQNLENFDKNI-----------------PLFKVPNRQIYTQIPSETKF------- 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + + + PL NF Sbjct: 269 ---------LMYEGGENFLKIFKDE--MDMFLIFQSSSLNDKKNVTIPL-------NFKP 310 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 311 LYRNFLGSDTYGIY 324 >gi|20092885|ref|NP_618960.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosarcina acetivorans C2A] gi|19918192|gb|AAM07440.1| riboflavin-specific deaminase [Methanosarcina acetivorans C2A] Length = 227 Score = 170 bits (431), Expect = 3e-40, Method: Composition-based stats. Identities = 59/194 (30%), Positives = 96/194 (49%), Gaps = 9/194 (4%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R I + A+S D + V I+G + ++ LRAQ+DAI+VGIGTVLADDP Sbjct: 1 MDRPFIFINSAMSADGKLSTKERKQVKISGKLDFERMDELRAQADAIMVGIGTVLADDPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R + +P+RII+D + LD+ I K +I V+ + Sbjct: 61 LTVKSPERKAARKAAGKSENPVRIIIDSAARTPLDADIFKKGEGLRIIAVSNSAPAEKIK 120 Query: 259 AFRKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + +K I D + +L +L +L G+ +L+VEGGA + +++ LVD + + Sbjct: 121 SLEEKARVIKTGDFKVNLPELAVLLKEMGINTLMVEGGATLNWGMLSAGLVDEVYTFVGN 180 Query: 318 IVIGEGGIPSPLEE 331 ++IG P+ + Sbjct: 181 LIIGGKTAPTFTDG 194 >gi|320164473|gb|EFW41372.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Capsaspora owczarzaki ATCC 30864] Length = 593 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 68/223 (30%), Positives = 105/223 (47%), Gaps = 16/223 (7%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + R +R ++ L A S D I + I+G S H LRA+ ILVGI TVL Sbjct: 366 MLRDQAERPYVVLSYAQSLDGCIAAEKGKPLAISGEASLVMTHRLRAEHAGILVGINTVL 425 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 AD+P LT RL + ++P I+LD H + L +K++ L P II + D Sbjct: 426 ADNPSLTVRL--VSGNNPQPIVLDTHLRFPLTAKLLTATPLKPWIITSLTADASREQRLV 483 Query: 262 KKNINIIYCD------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--SRLVDSIIL 313 + +I L + L L G+ S++VEGGA+V SF+N S L+D +++ Sbjct: 484 ELGARVIRVPIDPATNSVSLVEALHALYRIGLPSVMVEGGASVIRSFLNHPSHLIDRLVV 543 Query: 314 YRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCL 352 + +++ G S L+ + V+ + FG DV L Sbjct: 544 TIAPVIL--AGTHSTLDGKPQQPVALPQLRNVKYEQFGRDVVL 584 >gi|269929210|ref|YP_003321531.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter thermophilus DSM 20745] gi|269788567|gb|ACZ40709.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Sphaerobacter thermophilus DSM 20745] Length = 257 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 67/214 (31%), Positives = 95/214 (44%), Gaps = 11/214 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R T+ A + D I S ++ S H LRA+ DAILVGIGTVLADDP L Sbjct: 32 DRPWATVAYAQTLDGRIATRSGDSRWVSCPDSLTFAHCLRAEHDAILVGIGTVLADDPRL 91 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNIN 266 T RL + SPMR+ILD +L LD+ +++ ++VT P L R Sbjct: 92 TTRL--VAGPSPMRVILDSRLRLPLDAAVLRDGAADQTLVVTTAQAPPERLDCIRDTGAR 149 Query: 267 IIYC-----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +I DL L G+ +LL+EGGA + + + +VD + + + ++G Sbjct: 150 VIVATGHPGGGVDLADAFHQLRELGIRTLLIEGGARTITAALRAGVVDRLAVCIAPKILG 209 Query: 322 EG-GIPSPLEEGYLEKNFMCVRRDYF--GSDVCL 352 G L L RR G D+ L Sbjct: 210 AGIEAVGDLGIDRLADALPLQRRRVLLAGDDLIL 243 >gi|302382996|ref|YP_003818819.1| bifunctional deaminase-reductase domain protein [Brevundimonas subvibrioides ATCC 15264] gi|302193624|gb|ADL01196.1| bifunctional deaminase-reductase domain protein [Brevundimonas subvibrioides ATCC 15264] Length = 210 Score = 169 bits (429), Expect = 5e-40, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 103/210 (49%), Gaps = 10/210 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 IT K+A S D IG + S ITG ++ Q H LRA DA+LVG+ TVLADDP LT Sbjct: 3 PRITWKVATSLDGRIGTSTGESQWITGPQAREQGHRLRATHDAVLVGVETVLADDPRLTV 62 Query: 210 RLN-GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 RL G P+R++LD + +++ A +I+ T +P++ + Sbjct: 63 RLPDGETAADPLRVVLDSRLRTPPFARL---ARAGTLILTTR--EPIVIGEAEIVRVAGD 117 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327 ++ +L L RGV SL++EGG VA F+ + +VD+I +R+ I++G G P Sbjct: 118 SQGRPTVEAVLETLSARGVRSLMIEGGGRVAACFVTAGVVDAIEWFRAPILLGGDGRPGV 177 Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 L + + + G D+ Y Sbjct: 178 ASLALARLAHAPRYRRLAVEPMGDDLWERY 207 >gi|58039442|ref|YP_191406.1| bifunctional riboflavin biosynthesis protein RibD [Gluconobacter oxydans 621H] gi|58001856|gb|AAW60750.1| Bifunctional riboflavin biosynthesis protein RibD [Gluconobacter oxydans 621H] Length = 349 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 84/311 (27%), Positives = 136/311 (43%), Gaps = 40/311 (12%) Query: 14 ALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEA---GEEARG 69 A+ + G T+ NPSV C ++ +G ++ GV G PHAE AL +A G + Sbjct: 23 AISQAVETFGATAPNPSVGCTLLDAEGRILTVGVHPRVGQPHAEAMALAQARAAGVLDQA 82 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-----RGLQWLSQKGI 124 A VTLEPC+H GR+PPC++ + +R V + DP+ + +G R + + Sbjct: 83 RVALVTLEPCNHTGRTPPCSEALRNSPVREVWIGAADPNPQAAGGAARLREMPAGKHVVM 142 Query: 125 IVDRMMESE----GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 + DR ++ + L + +R V R I++K A+ ++ + T S Sbjct: 143 LADRPDMTDLARNCRALLAPFASRVVRHRPWISVKQALDENGSMVPPPGQKT-FTSPDSL 201 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCR-LNGLQEHSP-MRIILDPHFKLSLDSKIIK 238 H LR +DAI+ G+GTVLAD P T R + + SP + ++ D H +L D Sbjct: 202 TLAHRLRRATDAIITGVGTVLADRPRFTVRHVADHEGRSPRLLVVCDRHGRLPAD----- 256 Query: 239 TALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 + ++ DL + +L RGV ++E G A+ Sbjct: 257 -----------------WVSEMTEAGFEVLT--SSDLLSVPAMLAERGVNWAMIEAGPAL 297 Query: 299 AHSFINSRLVD 309 S + L D Sbjct: 298 LASVAKAGLWD 308 >gi|209544013|ref|YP_002276242.1| riboflavin biosynthesis protein RibD [Gluconacetobacter diazotrophicus PAl 5] gi|209531690|gb|ACI51627.1| riboflavin biosynthesis protein RibD [Gluconacetobacter diazotrophicus PAl 5] Length = 366 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 85/308 (27%), Positives = 128/308 (41%), Gaps = 45/308 (14%) Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77 +G T+ NP V C I+ G ++ G PHAE AL + E+ R + A VTLE Sbjct: 30 MGATAPNPPVGCAILDARGEILTVAAHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131 PC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E Sbjct: 90 PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149 Query: 132 --------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + + ++ R+ +T+K AV D + + T + Sbjct: 150 PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTT-FTSDAALTLA 208 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTAL 241 H LR +DA++ G GTVLAD P L R R ++ D ++ D Sbjct: 209 HRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPED-------- 260 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A R + ++ CD D+ +L +L GV LVE G A+ + Sbjct: 261 --------------WRAAARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALLDA 304 Query: 302 FINSRLVD 309 + L D Sbjct: 305 LRAAGLWD 312 >gi|315636537|ref|ZP_07891773.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22] gi|315479186|gb|EFU69883.1| riboflavin biosynthesis protein RibD [Arcobacter butzleri JV22] Length = 334 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 83/374 (22%), Positives = 138/374 (36%), Gaps = 75/374 (20%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL+ Sbjct: 1 MKIDDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKT 60 Query: 63 AGEEAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIEC 95 A + YVTLEPC+H G++P CA + E Sbjct: 61 AYLKDNPNSILKTKNSSFDIHQFLLHNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKEL 120 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 +RV++ V DP+ + + GL+ L + I V + E + +S I K Sbjct: 121 KPKRVIISVKDPN-KQATGGLETLKNENIDVTLGIL-EKDGLNLILPFISWQNKSCIFFK 178 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 +A + + I I+ + VH LR + D +++G +V D P L R +Q Sbjct: 179 MAQTLNGSIDGK------ISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTRY--IQ 230 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 +P I + + + K +I DL Sbjct: 231 GKNPDIFIYSKNKVFDNNIPLFKIPNRKVLI-------------------------SDDL 265 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 KLL +++EG + + R +D IL S + ++ Sbjct: 266 YKLLDYKF------IMIEGVYNLLDK-LKER-IDFFILIISPKIRKGQNA-----LNEID 312 Query: 336 KNFMCVRRDYFGSD 349 +F + ++ G D Sbjct: 313 LDFEIIHENFIGED 326 >gi|298674087|ref|YP_003725837.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanohalobium evestigatum Z-7303] gi|298287075|gb|ADI73041.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanohalobium evestigatum Z-7303] Length = 234 Score = 169 bits (428), Expect = 7e-40, Method: Composition-based stats. Identities = 65/220 (29%), Positives = 101/220 (45%), Gaps = 13/220 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R I L AVS D I V I+G +V L+ +SD ++VGIGTVLADDP L Sbjct: 10 NRPFIFLNAAVSADGKISTKERKQVKISGDNDFERVDELKKESDGVMVGIGTVLADDPSL 69 Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 T R N + +P RI++D + + +D+ I K VI V++ Sbjct: 70 TIKSENRKKYRKNNGLDENPARIVVDSNGRTPIDADIFKKGEGKRVIAVSKCAPEKKIKT 129 Query: 260 FRKK-NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++K +I + D DLK L+ L G+ L+VEGG+ + S ++ +LVD I + I Sbjct: 130 LKEKADIIVAGNDKVDLKILVEKLKDMGIEKLMVEGGSNLNWSLLSLKLVDEIHAFIGNI 189 Query: 319 VIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 +IG PS + + V + + + + Sbjct: 190 IIGGSTAPSLVGGSGFPETDMLKLKLVDFEQMDDGLLVRW 229 >gi|315927631|gb|EFV06962.1| riboflavin biosynthesis protein RibD [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 336 Score = 169 bits (428), Expect = 8e-40, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 151/374 (40%), Gaps = 79/374 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ AL + + LT NP+V C+I+ K+ ++ G HAE+ A+ A + Sbjct: 13 EFYMNLALNEAWKYQFLTYPNPAVGCIILDKNEKILAIKAHEKAGLAHAELNAIAHAFKS 72 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 R + A+VTLEPCSH G++PPCA+ E G +++ Sbjct: 73 LRPEISLPKEANALHEFICKNHQGVFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIF 132 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + V D + +++ G ++L ++GI + +++ EGK L +L Q + L ++++ Sbjct: 133 ISVKDEN-KIASGGAEFLKKQGIEVEFDILKEEGKKLLKPFLKWQKGQFKLFKLALSMNG 191 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ +S+ H +RA D ++VG T+ D P L RL + +P Sbjct: 192 SPF-------GKIVSNELSRTYAHEIRAVIDLLVVGGETIRKDCPILDARL--CKAKAPN 242 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + D I P+ + R+ I Sbjct: 243 LCILSRQNIDNFDKNI-----------------PLFKVPNRQIYTQIPSEAKF------- 278 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 L+ EGG F + +D ++++S + E + PL NF Sbjct: 279 ---------LMYEGGENFLKIFKDE--IDMFLIFQSSSLNDEKNVTIPL-------NFKP 320 Query: 341 VRRDYFGSDVCLEY 354 + R++ GSD Y Sbjct: 321 LYRNFLGSDTYGIY 334 >gi|307353941|ref|YP_003894992.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Methanoplanus petrolearius DSM 11571] gi|307157174|gb|ADN36554.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Methanoplanus petrolearius DSM 11571] Length = 226 Score = 168 bits (427), Expect = 9e-40, Method: Composition-based stats. Identities = 63/220 (28%), Positives = 107/220 (48%), Gaps = 14/220 (6%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 ++T+ +A+S D + V I+G +V +L+A++DAI+VGIGTVLADDP LT Sbjct: 2 FPYVTVNLAMSADGKLSTIERKQVKISGQDDFRRVDILKAENDAIMVGIGTVLADDPSLT 61 Query: 209 CRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 + L+E +P+RII+D + ++I+ +I V+++ DP Sbjct: 62 VKSPELKEKRLSSGRDENPVRIIVDSKARTPCSAEILHKGPGRRIIAVSKSADPKKIDEL 121 Query: 261 RKKNINIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K + D R DL+ L + G+ +L+VEGG ++ S LVD ++ Sbjct: 122 GKYAEIVQAGDERVDLRIFLAKIAEMGIETLMVEGGGSLIWSLFEDDLVDEYYTCIGNVI 181 Query: 320 IGEGGIPSPLEE-GYLEKN----FMCVRRDYFGSDVCLEY 354 IG P+P + G++ +N + S V L++ Sbjct: 182 IGGASAPTPADGTGFIRENEFTKLEIASMEKIDSGVLLKW 221 >gi|154150347|ref|YP_001403965.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Methanoregula boonei 6A8] gi|153998899|gb|ABS55322.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanoregula boonei 6A8] Length = 226 Score = 168 bits (427), Expect = 1e-39, Method: Composition-based stats. Identities = 67/222 (30%), Positives = 97/222 (43%), Gaps = 14/222 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + +A+S D + V I+G +V L+A DA+ VGIGTVLADDP LT Sbjct: 3 PRVIVNVAMSADGKLSTRERRQVKISGNEDFARVDRLKAGCDAVAVGIGTVLADDPSLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R + P+R+++D + D+ I+ VI V+E DP A R Sbjct: 63 KSPDLRAERQREGRPEHPVRVVIDGRARTPPDASILVKGDGLRVIAVSERADPAKVEALR 122 Query: 262 KKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K I D DL ++L L G+ SL+VEGG + FI + L D I Y IVI Sbjct: 123 AKAAVITAGKDEVDLSRVLDELGQMGIRSLMVEGGGTLIAGFIRAGLADEIYTYIGSIVI 182 Query: 321 GEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYIGK 357 G P+ + G + + V L ++ K Sbjct: 183 GGKDAPTLADGGGWIRESDFARLVLADVTRIDDGVLLHWMVK 224 >gi|170084365|ref|XP_001873406.1| predicted protein [Laccaria bicolor S238N-H82] gi|164650958|gb|EDR15198.1| predicted protein [Laccaria bicolor S238N-H82] Length = 237 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 72/229 (31%), Positives = 105/229 (45%), Gaps = 13/229 (5%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L Y + R H+TL A S D I + ++G S H LR+ DAILVGI Sbjct: 10 LARYSQQPPSIRPHVTLTFAQSTDAKIAAIPGKQLILSGDESMQMTHWLRSMHDAILVGI 69 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTENDD 253 GT L DDP+L R + P IILD H +LS K++ + P II T + D Sbjct: 70 GTALNDDPQLNTRRLPPPHNLPRPIILDSHLRLSTSCKLLNNFRAGSGRRPWIISTPSQD 129 Query: 254 P---VLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 P A + NII + + +L L R V SL+VEGGA V SF ++ Sbjct: 130 PSWISRKDALEQAGANIIEIPSLNGRLSVPAVLQSLRDRDVRSLMVEGGATVIASFFSAS 189 Query: 307 LVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +VD++I+ + ++G+ G+ L + + F G D ++ Sbjct: 190 VVDTLIITTAPTLVGDNGLGYTLAGSH--QQFTLAHTQLLGKDTVTSWV 236 >gi|296112128|ref|YP_003622510.1| riboflavin-specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Leuconostoc kimchii IMSNU 11154] gi|295833660|gb|ADG41541.1| riboflavin-specific deaminase(diaminohydroxyphosphoribosylaminopyrimidine deaminase) [Leuconostoc kimchii IMSNU 11154] Length = 248 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 108/232 (46%), Gaps = 11/232 (4%) Query: 92 IIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSH 151 + G+RRVVV DP+ +G+G+ L G+ VD + + + K+ + Sbjct: 1 MSTWGLRRVVVGSIDPNPTTNGQGIALLKAAGVEVDVLNTNHSACLNPEFYYYFQSKKPY 60 Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + LK+ VS+D + +T + VH RA AI++G T+L D P+LT RL Sbjct: 61 VQLKLVVSKDGFVSAGHHKRTKLTDARADIDVHQERAAKSAIMIGSQTLLVDQPQLTVRL 120 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271 + PMR+++D +L II TEN +AF +N N+ Y Sbjct: 121 VAIDHQQPMRVVIDRRGRLQNSHFDFSN----RWIIYTEN------VAFANQNHNV-YLM 169 Query: 272 CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 L +L L + + S+++EGG + ++FI L +++Y + +G G Sbjct: 170 THGLAGVLRHLAQQNIQSVMIEGGPKLMNAFIAENLWQEMLIYETNATLGSG 221 >gi|219851937|ref|YP_002466369.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanosphaerula palustris E1-9c] gi|219546196|gb|ACL16646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Methanosphaerula palustris E1-9c] Length = 231 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 61/210 (29%), Positives = 100/210 (47%), Gaps = 14/210 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +A+S D + V I+G I +V ++A SDAI+VGIGTVLADDP LT Sbjct: 3 PYVFVNVAMSADGKLSTRERRQVKISGSIDFRRVDQIKAGSDAIMVGIGTVLADDPSLTV 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI-IVTENDDPVLALAF 260 R ++ +P+R+++D + +++ I+ ++ + E D+ L Sbjct: 63 KDPELKAGRAARGEDENPIRVVVDSRGRTPIEAAILNKGSGQRIVAVAGEADEKNRELLR 122 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K ++ + DL LL L RGV L+VEGG + S I LVD I + +VI Sbjct: 123 EKADVITTGTESVDLPALLDALHARGVRRLMVEGGGTLIWSLIKEDLVDEIQTFIGNMVI 182 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 G P+ + +D+ G D+ Sbjct: 183 GGKDAPTLADGEGF-----LAAQDFVGLDL 207 >gi|242309140|ref|ZP_04808295.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT 98-5489] gi|239524181|gb|EEQ64047.1| riboflavin biosynthesis protein RibD [Helicobacter pullorum MIT 98-5489] Length = 343 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 75/378 (19%), Positives = 144/378 (38%), Gaps = 71/378 (18%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA----- 63 ++ A++ + T NP+V I+ K+G ++ G PHAEV AL+ A Sbjct: 6 YLELAIKEAWKTQCQTLPNPAVGAAILDKNGKLLSINAHQEAGKPHAEVLALKNAYFHLT 65 Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + +T Y TLEPC H G++P CA I GI+ +V Sbjct: 66 QDSAILSLQESHQIHQYLKQNAKDIFHNSTLYTTLEPCMHEGKTPSCASLIKSLGIKNLV 125 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 V DP+ + + G ++L+ I V ++ E L + + + K + Sbjct: 126 VAAKDPNPK-AQGGAEYLANSNIKVTKIWEDSQFNTLAIKAQELLLPFNLLQKKGSFVLF 184 Query: 162 NMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 I+ ++ +H LR++ + +++ T+L D+P L R L+ +P Sbjct: 185 KYACRLDGSIDGGQISSKETQIFMHNLRSKLNNLIISGKTILLDNPTLDSRFCSLENKNP 244 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 I + L+ +S +TA P+ A+ RK I + Sbjct: 245 PNITI-----LTKNSNFPQTA-------------PLFAIPNRKVEICHSIPNFSGF---- 282 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339 ++ EGG + S + +D ++++ S + + + + +F Sbjct: 283 ----------VMCEGGNNLLESLLPH--IDMLLVFVSPTL------STYHLTHHFQAHFK 324 Query: 340 CVRRDYFGSDVCLEYIGK 357 + G+D+ L + + Sbjct: 325 LLHCQMIGNDIALWLLPQ 342 >gi|307720625|ref|YP_003891765.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM 16294] gi|306978718|gb|ADN08753.1| riboflavin biosynthesis protein RibD [Sulfurimonas autotrophica DSM 16294] Length = 339 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 80/372 (21%), Positives = 136/372 (36%), Gaps = 76/372 (20%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ A+ + + GLT NP+V C IV + G ++ G PHAEV A++ A + Sbjct: 7 FYMNLAISEAWKYQGLTYANPAVGCSIVGEHGELLAVEAHHKAGEPHAEVNAIKAAYYKL 66 Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 + + Y TLEPCSH G++P CA I E GI+ V Sbjct: 67 TQDEKILQLISSSQIHIYLLQNHNNIFKKCSLYSTLEPCSHVGKTPSCANLIAELGIKNV 126 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 V V+D + + I + + + + L + +K ++ Sbjct: 127 FVGVEDFNTDAANGNTVLEKSGANISLHVEQQKCEDLLFPFKKFMSDKFVFFKWAQRLNG 186 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 + I+ S+ VH +R D +++G TV D P L RL + +P Sbjct: 187 -------TTDAGIISSAESRKNVHAMRDVCDLLVIGGNTVRNDRPTLDARL--VNGKAPD 237 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 +IL K TA+ P+ + RK I + D Sbjct: 238 ILILSRE-------KEFDTAI------------PLFHVKNRKVYIESDFSRMND------ 272 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 ++++EG A + ++ +VD + Y + G G +E F Sbjct: 273 ------YKNIMIEGSAKMYE--LSRDIVDYYLCYLAPAFGGHDGFK------NIEDKFQI 318 Query: 341 VRRDYFGSDVCL 352 + D D+ + Sbjct: 319 LNADKEEEDIIM 330 >gi|218506245|ref|ZP_03504123.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase protein [Rhizobium etli Brasil 5] Length = 137 Score = 168 bits (425), Expect = 2e-39, Method: Composition-based stats. Identities = 80/133 (60%), Positives = 99/133 (74%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M V+ D FM+AA+R SR H+G T+TNPSV CLIV+DG+++G+ VTA GG PHAE QAL Sbjct: 1 MSVTPDDEGFMAAAIRLSRRHLGRTATNPSVGCLIVRDGVIVGQAVTAIGGRPHAEPQAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 EAG+ ARGATAYVTLEPCSH+G++PPCA+ +I G+ RVV+ V DPD RVSGRG+ L Sbjct: 61 AEAGQLARGATAYVTLEPCSHHGKTPPCAEALIAYGVARVVISVTDPDPRVSGRGITMLR 120 Query: 121 QKGIIVDRMMESE 133 GI VD Sbjct: 121 DAGIEVDTGALEA 133 >gi|58698891|ref|ZP_00373757.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] gi|58534587|gb|EAL58720.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Drosophila ananassae] Length = 167 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 67/150 (44%), Positives = 91/150 (60%), Gaps = 1/150 (0%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI + Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 +M+ E K + T + R I K Sbjct: 123 EQGIMQKEAKELNVGFFTTKELHRPFIACK 152 >gi|325676732|ref|ZP_08156406.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707] gi|325552514|gb|EGD22202.1| riboflavin biosynthesis protein RibD [Rhodococcus equi ATCC 33707] Length = 263 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 84/289 (29%), Positives = 134/289 (46%), Gaps = 35/289 (12%) Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR--MMESE 133 LEPC+H GR+ PC++ +I+ GI V V DP+ + G L I V + + Sbjct: 1 LEPCNHQGRTGPCSRALIDAGIAAVHYSVADPNP-AAAGGADTLRAARIEVTGGLLADDA 59 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAI 193 + L A+L RQ R H+T K A + D A S ITG ++ +VH RA+ DAI Sbjct: 60 ERGPLRAWLHRQRTGRPHVTWKFAATLDGRSAAADGTSQWITGPEARARVHADRARLDAI 119 Query: 194 LVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 +VG GTVLADDP LT R+ L H P+R+++ + ++++ A AP ++ Sbjct: 120 VVGTGTVLADDPWLTARMPDGSLAPHQPLRVVVGNRP-VPSTARVLDDA--APTLV---- 172 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 D+ ++L+ L + +LVEGG +A +F+ + VD + Sbjct: 173 ------------------LRTHDVGEILSALADQ--DDVLVEGGPRLAGAFLAAGAVDRV 212 Query: 312 ILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 Y + +V+G G + + F + G D+ L I + Sbjct: 213 QAYIAPVVLGAGSHAVEDAGVSTITEALRFRRENVEVLGDDLLLNLIPR 261 >gi|83858225|ref|ZP_00951747.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] gi|83853048|gb|EAP90900.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] Length = 210 Score = 167 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 67/210 (31%), Positives = 96/210 (45%), Gaps = 8/210 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TLK+A S D I +A S ITG ++ +VH +RA DAIL GIGTVLADDP++T Sbjct: 1 MQVTLKLATSLDGRIALANGQSQWITGPEARAEVHRMRASHDAILTGIGTVLADDPQMTA 60 Query: 210 RLNG-LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R +G L P RI+LD +L ++I+ PV + Sbjct: 61 RPDGALANRQPQRIVLDSQLRLPAYAEILTGE---PVWVFHTGGARSDLENVELFETEAD 117 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS- 327 ++ L RGV S+++E G +A + I S V I +R+ +IG G Sbjct: 118 DGGRVSFSAVMQSLAARGVGSVMIEAGREIAGAAIRSDCVTRIEWFRAPRLIGAEGRACI 177 Query: 328 ---PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 LEE L F + G+D+ Y Sbjct: 178 AGLGLEELSLAPTFKRMEVRACGADLWETY 207 >gi|157738249|ref|YP_001490933.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter butzleri RM4018] gi|157700103|gb|ABV68263.1| bifunctional riboflavin biosynthesis protein RibD [Arcobacter butzleri RM4018] Length = 334 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 142/374 (37%), Gaps = 75/374 (20%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 + D +M A+ + H LT NP+V C+IVK+ ++ G PHAEV AL+ Sbjct: 1 MKIDDNFYMRLAIDEAWKHQLLTYPNPAVGCVIVKNQRLLAVEAHKEAGMPHAEVNALKT 60 Query: 63 AGEEAR---------------------------GATAYVTLEPCSHYGRSPPCAQFIIEC 95 A + YVTLEPC+H G++P CA + E Sbjct: 61 AYLKDNPNSILKTKNSSFDIHQFLLQNHNGFFNDCEIYVTLEPCNHIGKTPSCANLLKEL 120 Query: 96 GIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 +RV++ V DP+ + + GL+ L + I + + + +S I K Sbjct: 121 KPKRVIISVKDPN-KQATGGLETLRNENI-NVTLDILKKDGLNLILPFISWQNKSCIFFK 178 Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 +A + + I I+ + VH LR + D +++G +V D P L R +Q Sbjct: 179 MAQTLNGSIDGK------ISSNRALAYVHTLRDKIDLLVIGGNSVRIDKPTLDTRY--IQ 230 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 +P I + K+ T + P+ + RK I DL Sbjct: 231 GKNPDIFIYSKN-------KVFDTNI------------PLFKIPNRKVLI------SDDL 265 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 KLL +++EG + + R +D IL S + ++ Sbjct: 266 YKLLDYKF------IMIEGVYNLLDK-LKER-IDFFILIISPKIRKGQNA-----LNEID 312 Query: 336 KNFMCVRRDYFGSD 349 +F + ++ G D Sbjct: 313 LDFEIIHENFIGED 326 >gi|219848143|ref|YP_002462576.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aggregans DSM 9485] gi|219542402|gb|ACL24140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Chloroflexus aggregans DSM 9485] Length = 222 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 101/218 (46%), Gaps = 15/218 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R +TL A + D + S I+ S + H LRA SDAI+VG+GTVL DDP Sbjct: 1 MIRPRVTLSFAQTLDGRVAAVDGSSQWISSADSLHFCHSLRAASDAIMVGVGTVLRDDPR 60 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNI 265 LT RL ++ P+R+I+D + + +I+ ++ P R+ Sbjct: 61 LTVRL--VEGCDPVRVIVDSTLRTPPTAAVIRDGAARGTVLACTAAAPSERRTVLRELGA 118 Query: 266 NIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 I+ DL LL L RG+ S++VEGGA + + + LVD++ + + +++ Sbjct: 119 TILTLPATPDGKVDLVALLASLAERGIASIMVEGGACLITGLLRAHLVDAVAITIAPLIL 178 Query: 321 GEGGIPSPLEEGYLEKNFMC-----VRRDYFGSDVCLE 353 G G P+ + + + VR +G DV LE Sbjct: 179 GAG--PAAVGDLGITTLAQAIKLGDVRWTTYGVDVVLE 214 >gi|222823268|ref|YP_002574841.1| riboflavin biosynthesis protein [Campylobacter lari RM2100] gi|222538489|gb|ACM63590.1| riboflavin biosynthesis protein [Campylobacter lari RM2100] Length = 330 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 129/300 (43%), Gaps = 37/300 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M+ A+ + + LT NP+V C+I+ K+G ++ G HAE++A+ +A +E Sbjct: 4 EFYMNLAIDEAWKYQFLTYPNPAVGCVILDKNGKILSIKAHKEAGKAHAELEAVSKALKE 63 Query: 67 A-------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 +GATAYV+LEPC+H G++PPCA+ E G V Sbjct: 64 LDPNLDLPQDANDLHEFICKNHQGLLKGATAYVSLEPCNHQGKTPPCAKLFSELGFSEVF 123 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + + D +++ G+++L KGI + + E K L +L Q L ++++ Sbjct: 124 IAIKDEH-KLASGGVEFLKSKGIKVQIGICEKRAKELLKPFLKWQKSSFKIFKLALSLNG 182 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 ++ S+ H LR++ D ++VG T+ D P L RL Q +P Sbjct: 183 -------SASGKIVSSKASRAYAHALRSKLDLLVVGGETIRHDRPILDARL--AQAKAPN 233 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL S D KI + I ++ + +N + D D+ + + Sbjct: 234 LCILSHQNLESFDQKIPLFNVSNRKIFSNIPNEARFIMYEGGENFLKAFKDELDMLLIFS 293 >gi|159471802|ref|XP_001694045.1| predicted protein [Chlamydomonas reinhardtii] gi|158277212|gb|EDP02981.1| predicted protein [Chlamydomonas reinhardtii] Length = 121 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 59/119 (49%), Positives = 77/119 (64%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D ++ AL ++ G T NP+V C+IVKDG V+G G G PHAEV AL AG Sbjct: 1 QDRAYILKALELAKRAQGKTHPNPAVGCVIVKDGKVVGEGYHPKAGMPHAEVYALRGAGN 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GATAYVTLEPC+HYGR+PPC++ ++E + RVVV V DP+ V+ G+ L + GI Sbjct: 61 NAEGATAYVTLEPCNHYGRTPPCSRALVEAKVARVVVGVGDPNPLVAAEGIATLEKAGI 119 >gi|237755949|ref|ZP_04584538.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691898|gb|EEP60917.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium yellowstonense SS-5] Length = 221 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 15/222 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 KR ++ + V+ D + ++ + + +H RA+ D I+VG T+ Sbjct: 1 MKRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R + +P RII + D+ I+K +P IIVT P L Sbjct: 61 DNPYLTVRY--VSGKNPTRIIPTSTAYIPPDANILK--KDSPTIIVTTEKAPKERLKMLS 116 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + +I + DL K++ IL RG+ +L+VEGG+ + + I + LVD I + ++ Sbjct: 117 EKVEVIIAGKEEVDLIKMMDILYNRGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIV 176 Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357 G P+ + + V+ R +F GS + E+ K Sbjct: 177 GGTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEWEVK 218 >gi|225849717|ref|YP_002729951.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Persephonella marina EX-H1] gi|225645135|gb|ACO03321.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Persephonella marina EX-H1] Length = 221 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 101/222 (45%), Gaps = 15/222 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202 +R + + V+ D + + S + +H LRA+ D I+VG T+ Sbjct: 1 MQRPYTIIVSEVTVDGKLTLRRGRSSKEIMQFMDDEANRYLHELRAKVDGIMVGAETIRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R ++ +P RI+ + LD+ I+ AP IIVT P + K Sbjct: 61 DNPFLTVRY--VEGKNPTRIVPTSKADIPLDANIL--EKHAPTIIVTSESAPEEKVKALK 116 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + +I D DL +++ L +G+ +L+VEGG+ + + I LVD I L ++ Sbjct: 117 EKVEVIISGKDQVDLIEMMDTLYRKGIKTLMVEGGSTLNWNLIKFGLVDEIRLIHMPFIV 176 Query: 321 GEGGIPSPL-EEGYLEKN--FMCVRRDYF--GSDVCLEYIGK 357 G P+ + EG+ N R +F GS + E+ K Sbjct: 177 GGEDTPTLVGGEGFYSLNDVVKTKLRAHFMRGSHLITEWEIK 218 >gi|188996174|ref|YP_001930425.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfurihydrogenibium sp. YO3AOP1] gi|188931241|gb|ACD65871.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfurihydrogenibium sp. YO3AOP1] Length = 221 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 15/222 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 KR ++ + V+ D + ++ + + +H RA+ D I+VG T+ Sbjct: 1 MKRPYVIIVSEVTVDGKLTLSKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R + +P RII + LD+ I+K +P IIVT P + Sbjct: 61 DNPYLTVRY--VSGKNPTRIIPTSTADIPLDANILK--KDSPTIIVTTEKAPEERVKALS 116 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + +I + DL K++ IL +G+ +L+VEGG+ + + I + LVD I + ++ Sbjct: 117 EKVEVIVAGKEEVDLIKMMDILYNKGIRNLMVEGGSTLNWNLIKNGLVDEIRIIHMPFIV 176 Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357 G P+ + + V+ R +F GS + E+ K Sbjct: 177 GGTDTPTLVGGEGFKSLEEVVKLKLRAHFMRGSHLITEWEVK 218 >gi|118576931|ref|YP_876674.1| riboflavin specific deaminase [Cenarchaeum symbiosum A] gi|118195452|gb|ABK78370.1| riboflavin specific deaminase [Cenarchaeum symbiosum A] Length = 217 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 69/213 (32%), Positives = 103/213 (48%), Gaps = 10/213 (4%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + L A S D I S I+ +VH LR++ D I+VG GTV++DDP LT R Sbjct: 1 MILGAAASVDGRIATRTGDS-GISSARDLRRVHRLRSEVDGIMVGRGTVVSDDPLLTARH 59 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINIIYC 270 G +P+RII+DP +L +S+I +TA P I+ P ++ ++ Sbjct: 60 RG--GRNPVRIIIDPLGRLPPESQIARTAGRIPTIVACTGRIPPRNRRRLEGLSVEVLEA 117 Query: 271 --DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-IPS 327 D DL LL L RG+ ++L+EGGA FI LVD +I+ + +VIG G +P Sbjct: 118 GTDEMDLLVLLRALYRRGLRTILLEGGARTNWGFIERGLVDEMIITIAPVVIGGTGSVPL 177 Query: 328 PLEEGYL---EKNFMCVRRDYFGSDVCLEYIGK 357 G+ + F G +V L Y+ + Sbjct: 178 VGGRGFAGVHRRAFRLKEALRQGDEVVLHYVKR 210 >gi|21672711|ref|NP_660778.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25091137|sp|Q8K9A3|RIBD2_BUCAP RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|21623354|gb|AAM67989.1| riboflavin biosynthesis protein RibD [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 217 Score = 165 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 17/216 (7%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE- 216 +S D I M S IT S+ V RA+S AIL T+L DDP L R + Sbjct: 1 MSIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKN 60 Query: 217 ----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 P+RII+D ++ KII+T ++++ D + K+ I Sbjct: 61 TLSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQTKE--KILLMRLKLDKEIWPENTKQIII 118 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 Y + DL +L L + +L +E G+ ++ F+ L+D II+Y + ++G P Sbjct: 119 KPYKENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178 Query: 327 SPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKN 358 + L+ F G D+ ++ KN Sbjct: 179 LFIFNNQLKLFDCLKFDFKDIRQIGPDIRIKLEPKN 214 >gi|325968187|ref|YP_004244379.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Vulcanisaeta moutnovskia 768-28] gi|323707390|gb|ADY00877.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Vulcanisaeta moutnovskia 768-28] Length = 219 Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 93/218 (42%), Gaps = 14/218 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + ++ + A S D I ++ ++H +RA DAI+VG TV+ DDP Sbjct: 1 MPKPYVIIVSAASIDGRIASKTG-YSRLSCPFDLRRLHEVRASVDAIMVGANTVINDDPS 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT R +P+R+I+D ++ L +K+I +I+ TE D + Sbjct: 60 LTPRYV-KAIKNPIRVIIDGKLRIPLTAKVITNKEAPTIIVTTEQSDRNKTAQLMNMGVE 118 Query: 267 IIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + + +L+ +L L +GV +LVEGG + I + D I L S V G G Sbjct: 119 VWVMGKERVNLRDVLEKLFTEKGVKRVLVEGGGHLNWELIKEEIADEIRLTISPYVFGAG 178 Query: 324 -------GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 G P+ +E L V G +V L+Y Sbjct: 179 TSFIEGEGYPTTMEGPRL--RLKSVNICECGQEVVLDY 214 >gi|57168828|ref|ZP_00367959.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228] gi|305432431|ref|ZP_07401593.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20] gi|57019875|gb|EAL56558.1| riboflavin biosynthesis protein (ribG) [Campylobacter coli RM2228] gi|304444470|gb|EFM37121.1| riboflavin biosynthesis protein RibD [Campylobacter coli JV20] Length = 326 Score = 165 bits (417), Expect = 1e-38, Method: Composition-based stats. Identities = 80/373 (21%), Positives = 150/373 (40%), Gaps = 79/373 (21%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M+ AL + + LT NP+V C+I+ K+ ++ GC HAE+ A+ A Sbjct: 4 FYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIAHAFTNL 63 Query: 68 -------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + A+VTLEPCSH G++PPCA+ E G +++ + Sbjct: 64 NPEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSELGFKKIFI 123 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 V D + ++ +G ++L ++G+ ++ +++ EGK L +L Q + L ++++ Sbjct: 124 SVKDEN-EIASKGAEFLKKQGVEIEFGVLKDEGKKLLKPFLKWQKGQFKLFKLALSMNGS 182 Query: 162 NMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR 221 ++ +S+ H +R+ D +++G T+ D P L RL + +P Sbjct: 183 PF-------GKIVSNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARL--CKGKAPNL 233 Query: 222 IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTI 281 IL + D I ++ I + Sbjct: 234 CILSHQNLENFDKSIPLFSVPHRQIYTQIPNKAKF------------------------- 268 Query: 282 LVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 L+ EGG F + +D ++++S + E + PL NF + Sbjct: 269 --------LMYEGGENFLKKFKDE--MDMFLIFQSSSLNDEKNVTMPL-------NFKPL 311 Query: 342 RRDYFGSDVCLEY 354 R++ GSD Y Sbjct: 312 YRNFLGSDTYGIY 324 >gi|162146949|ref|YP_001601410.1| riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus PAl 5] gi|161785526|emb|CAP55097.1| Riboflavin biosynthesis protein [Gluconacetobacter diazotrophicus PAl 5] Length = 366 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 84/308 (27%), Positives = 127/308 (41%), Gaps = 45/308 (14%) Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE---ARGATAYVTLE 77 +G T+ P V C I+ G ++ G PHAE AL + E+ R + A VTLE Sbjct: 30 MGATAPKPPVGCAILDARGEILTVAGHHRAGAPHAEALALRQCAEQGLMDRASVAVVTLE 89 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMME------ 131 PC+H GR+ PC++ I+ IR V V DP+ RV+G G L G V + E Sbjct: 90 PCNHTGRTGPCSEAILASPIRTVWVGAADPNPRVAGGGAARLRAAGCAVYVLGEAGGELL 149 Query: 132 --------SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 + + + ++ R+ +T+K AV D + + T + Sbjct: 150 PDPFPELAAACRALIAPFVHWSRTGRAWLTVKQAVDADGSMIPPAGRTT-FTSDAALTLA 208 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMR--IILDPHFKLSLDSKIIKTAL 241 H LR +DA++ G GTVLAD P L R R ++ D ++ D Sbjct: 209 HRLRRATDAVVTGSGTVLADRPGLDVRRVADHADRAARPLVVCDRRGRVPED-------- 260 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 A R + ++ CD D+ +L +L GV LVE G A+ + Sbjct: 261 --------------WRAAARGRGFDVRTCD--DITRLPAMLGADGVLWALVEAGPALLDA 304 Query: 302 FINSRLVD 309 + L D Sbjct: 305 LRAAGLWD 312 >gi|213421646|ref|ZP_03354712.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 164 bits (415), Expect = 3e-38, Method: Composition-based stats. Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 13/184 (7%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 +L R ++ LK+ S D MA S IT ++ V LRAQS AIL TV Sbjct: 1 FLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSATV 60 Query: 201 LADDPELTCRLNGLQE-----------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249 LADDP LT R L P+RI++D +++ +I++ I T Sbjct: 61 LADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHRIVQQPGE-TWIART 119 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 + D + R ++ + DL L+ L + + S+ VE G +A + + + LVD Sbjct: 120 QEDSHAWPDSVRTISV-PAHNGHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVD 178 Query: 310 SIIL 313 +I+ Sbjct: 179 ELIV 182 >gi|260551098|ref|ZP_05825302.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624] gi|260405865|gb|EEW99353.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. RUH2624] Length = 113 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 48/99 (48%), Positives = 67/99 (67%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M D +M A+ ++ + T NP+V C+IVKD VIG G G PHAEV AL Sbjct: 1 MSELKQDQYWMQQAIELAKRGLYSTKPNPNVGCVIVKDNQVIGEGFHPKAGQPHAEVFAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 +AGE+A+GATAYVTLEPC+HYGR+PPCA+ +++ +++ Sbjct: 61 RQAGEQAQGATAYVTLEPCAHYGRTPPCAEALVKAQVKK 99 >gi|83859882|ref|ZP_00953402.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] gi|83852241|gb|EAP90095.1| riboflavin biosynthesis protein RibD [Oceanicaulis alexandrii HTCC2633] Length = 195 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 72/186 (38%), Positives = 102/186 (54%), Gaps = 7/186 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE 61 PV++ D R+M AL + +G T+ NPSV C+IV+DG +IG TA GG PHAE QALE Sbjct: 5 PVTAEDLRYMDTALALAYARLGQTAPNPSVGCIIVRDGRIIGAAATAPGGRPHAEPQALE 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +AG A GAT YVTLEPC+HYG++PPCA+ +I VV+ DP V+GRG+ L+ Sbjct: 65 QAGARAEGATVYVTLEPCAHYGKTPPCAEALIAAHPAEVVIACRDPFEHVAGRGMTMLAD 124 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 GI +++ + E++ + R R + D G+ V G + Sbjct: 125 AGIAVLEGVREADAIALNAGFFERLKTGRPLLAS------DPRTGLFDADLVLQAGEDTG 178 Query: 181 NQVHLL 186 + L Sbjct: 179 AALDRL 184 >gi|315639223|ref|ZP_07894385.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis JV21] gi|315480549|gb|EFU71191.1| riboflavin biosynthesis protein RibD [Campylobacter upsaliensis JV21] Length = 327 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 84/362 (23%), Positives = 144/362 (39%), Gaps = 77/362 (21%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +MS AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA + Sbjct: 3 EFYMSLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKL 62 Query: 67 AR-------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + ATA+VTLEPC+H G++PPCA+ ++V Sbjct: 63 LKPEFNFPKEPNALHEFILTNHQKLLQNATAFVTLEPCAHQGKTPPCAKLFSTLEFKKVF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 V V D + +++ G ++L Q GI + ++E EG+ L +L Q L ++++ Sbjct: 123 VSVKDEN-QIASGGAEFLRQNGILVEMGILEKEGRELLKPFLKWQKGAFKLFKLALSLNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 + ++ S+ H +R+ D ++VG GT+ D P L RL G +P Sbjct: 182 SAL-------GKFVSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG--GKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL S D I + I + Sbjct: 233 LCILSHQNLESFDKTIPAFNVKNRQIFTQIPSNAKF------------------------ 268 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP-----SPLEEGYLE 335 L+ EGGA SF N +D +++ + E + PL +G + Sbjct: 269 ---------LMYEGGAEFLKSFKNQ--MDMFLIFHNAKFNQEENVKLDLELRPLFKGNFK 317 Query: 336 KN 337 ++ Sbjct: 318 ED 319 >gi|15605930|ref|NP_213307.1| riboflavin specific deaminase [Aquifex aeolicus VF5] gi|2983103|gb|AAC06708.1| riboflavin specific deaminase [Aquifex aeolicus VF5] Length = 224 Score = 162 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 13/223 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202 +R ++ + VS D + + S + + +H +RA+ D I+VG TV Sbjct: 1 MERPYVIIVSEVSVDGKLTLYRGASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETVRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R + +P+RII + LD+ ++ T +I TE ++ Sbjct: 61 DNPSLTVRY--AKGKNPVRIIPCSTANVPLDANVLNTKEAPTIIATTERAPKERLEKIKE 118 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +I + D KLL L RG+ SL+VEGGA++ F+ R+VD I L +++ Sbjct: 119 LGAEVIVVGDELVDFDKLLPELYRRGIKSLMVEGGASINWEFVRRRVVDEIRLIHLPVIV 178 Query: 321 GEGGIPSPLEEGYLE--KNFMCVR-RDYF--GSDVCLEYIGKN 358 G +P+ + + KN + +R R +F G + E+ N Sbjct: 179 GGENVPTLVGGEGFKKLKNLLHLRLRSHFVRGKQLITEWEVVN 221 >gi|284176227|ref|YP_003406504.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine 1-reductase [Haloterrigena turkmenica DSM 5511] gi|284017884|gb|ADB63831.1| 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine 1-reductase [Haloterrigena turkmenica DSM 5511] Length = 220 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 94/222 (42%), Gaps = 15/222 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A S D + + I+G +V LRA SDA++VG+GTVLADDP LT Sbjct: 1 MHVVVNAATSADGKLSSRRREQIAISGEADFERVDRLRAYSDAVVVGVGTVLADDPHLTV 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 RL + P R+++D + D+ ++ A A + PV + Sbjct: 61 KDESLCDERLERGEPKQPARVVVDSKGRTPTDAAVLDDA--ATTYVCLSEAAPVGSRMDL 118 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + ++ D DL + L +G+ ++VEGG + S + LVD + L+ V Sbjct: 119 VDHAELVTAGNDRVDLLRAFAALEEQGLERIMVEGGGELIFSLFEAGLVDELRLFVGPKV 178 Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGKN 358 IG P+ + + F + + L + ++ Sbjct: 179 IGGRDAPTLADGEGFVEEFPLLHLEDLERLDDGALLRWTVED 220 >gi|118474836|ref|YP_892622.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. fetus 82-40] gi|118414062|gb|ABK82482.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. fetus 82-40] Length = 336 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 75/284 (26%), Positives = 115/284 (40%), Gaps = 42/284 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE- 65 +M+ A+ + LT NP+V C+I K+G ++ G PHAE+ A++ A E Sbjct: 4 EYYMNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEM 63 Query: 66 ----------------------------EARGATAYVTLEPCSHYGRSPPCAQFIIECGI 97 G+TAYVTLEPCSH GR+PPCA + E G Sbjct: 64 KNPAFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGF 123 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKI 156 ++V++ D + G Q L GI + E L +L + S + + Sbjct: 124 KQVIIGAIDS-SENAKGGEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSFFKIAL 182 Query: 157 AVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE 216 G+A G I+ S+ H LR+ D +++G TV D P L RL Sbjct: 183 TQ-----NGIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLV-KNG 234 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 +P ++ K + +L +IV+ + D V F Sbjct: 235 KNPDILLYSKESKFDTTIPLFN--ILDRRVIVSNSLDAVFERKF 276 >gi|257413677|ref|ZP_04743810.2| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82] gi|257202725|gb|EEV01010.1| riboflavin biosynthesis protein RibD [Roseburia intestinalis L1-82] Length = 173 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 R+M A+ + G T TNP V ++VK+ +IG G G HAE +AL + G Sbjct: 34 ERYMRRAMELAELGRGWTKTNPVVGAVLVKEDRIIGEGYHKKFGGLHAEREALADCRSRG 93 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 E+ GA YVTLEPC HYG++PPC Q +IE GI V V +D + V+G G++ L ++GI Sbjct: 94 EDPAGADLYVTLEPCCHYGKTPPCTQAVIEAGISHVFVGAEDINPLVAGAGIRQLREQGI 153 Query: 125 -IVDRMMESEGKIFLHAYLT 143 + + +++ E + + Sbjct: 154 LVTEGVLQEECEYQNRVFFH 173 >gi|163782963|ref|ZP_02177958.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] gi|159881643|gb|EDP75152.1| riboflavin specific deaminase [Hydrogenivirga sp. 128-5-R1-1] Length = 223 Score = 162 bits (410), Expect = 9e-38, Method: Composition-based stats. Identities = 53/221 (23%), Positives = 97/221 (43%), Gaps = 13/221 (5%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTV 200 +E+R ++ + VS D + + S + + +H +RA+ D I+VG TV Sbjct: 1 MMEQRPYVIIVSEVSIDGKLTLYRGASSKELMSLMDEEAYRYLHEIRAKVDGIMVGCETV 60 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+P LT R ++ +P RII + LD+ ++ T +I TE D Sbjct: 61 RTDNPSLTVRY--VKGKNPTRIIPCSTANVPLDANVLNTEDAPTIIATTERADKERVKKI 118 Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 +K ++ + D LL L G+ +L+VEGGA++ F+ + VD I L + Sbjct: 119 EEKGAKVVVAGDELVDFDLLLPKLYEMGIKTLMVEGGASINWEFVRRKKVDEIRLIHLPV 178 Query: 319 VIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 ++G +P+ + +K + G+ + E+ Sbjct: 179 IVGGENVPTLVGGEGFKKLKDILHLRLRSHFKRGNQLITEW 219 >gi|154173746|ref|YP_001408781.1| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92] gi|153793001|gb|EAT99582.2| riboflavin biosynthesis protein RibD [Campylobacter curvus 525.92] Length = 376 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 67/282 (23%), Positives = 109/282 (38%), Gaps = 59/282 (20%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59 D +M AL + LT NP+V C+I ++G ++ GC HAE A Sbjct: 3 DEFYMQLALNKAWEFQILTYPNPAVGCVITDRNGKILSCEAHKKAGCLHAEPMAVFFALC 62 Query: 60 ---------------------------LEEA---------------GEEARGATAYVTLE 77 L+ A +GA AYVTLE Sbjct: 63 ALSGEFLAKFLDAYGAKFSQNFSGLDELKSAELEPNFTYEFILAYHANLLKGAKAYVTLE 122 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PCSH+GR+PPCA+ + VV+ D + +++ G + L G+ + +++ + Sbjct: 123 PCSHHGRTPPCAELLKRLNFGEVVIGARDEN-KIASGGAEILKNSGVRVKFDVLKDKALE 181 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + + S + + ++ G+A G I+G S+ VH LR+ D +++G Sbjct: 182 LIAPFRAWHDGNFSFLKIALSA-----NGVANGGV--ISGEQSRTHVHKLRSVIDLLVIG 234 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 TV D P L RL +P +I + K Sbjct: 235 GNTVRTDRPRLDTRLING-GENPDVLIFSRRQNFDESIPLFK 275 >gi|88603813|ref|YP_503991.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] gi|88189275|gb|ABD42272.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanospirillum hungatei JF-1] Length = 225 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 101/206 (49%), Gaps = 13/206 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +AVS D + V I+G ++V ++A DAI+VGIGTVLADDP LT Sbjct: 3 PYVIVNVAVSADGKLSTRERRQVKISGKEDFDRVDEIKAGCDAIMVGIGTVLADDPSLTI 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R+ + P+RI++D + D+KI+ +I V+ P ++ Sbjct: 63 KSADRIAERVRNGKPEHPVRIVVDSQARTPPDAKILHKGPGLRIIAVSL-AAPEENISAL 121 Query: 262 KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K + II DL LLT L +G+ L+VEGG + +++ LVD + ++ I+ Sbjct: 122 KNHAEIIQAGEVTVDLPVLLTKLAEKGIKRLMVEGGGTLIWGMLSAGLVDELTMFVGNII 181 Query: 320 IGEGGIPSPLEEGY--LEKNFMCVRR 343 IG P+ + LE +F + R Sbjct: 182 IGGKDAPTLADGTGYVLESDFPVLER 207 >gi|32266337|ref|NP_860369.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC 51449] gi|32262387|gb|AAP77435.1| riboflavin biosynthesis protein RibD [Helicobacter hepaticus ATCC 51449] Length = 348 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 84/382 (21%), Positives = 143/382 (37%), Gaps = 67/382 (17%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA 59 M ++S D F+ + L NPSV L+V K G ++ + V G PHAEV A Sbjct: 1 MFLNSSDELFLHYCCSLAWESQTLALPNPSVGALVVDKYGQILSQAVHKVAGSPHAEVLA 60 Query: 60 LEEAGEEARG---------------------------ATAYVTLEPCSHYGRSPPCAQFI 92 ++ A G T YV+LEPC+HYG++PPC+Q + Sbjct: 61 IQAAYHTLSGDDEIVKLHKSKDIHTYLLAHHNGLFKECTLYVSLEPCNHYGKTPPCSQLL 120 Query: 93 IECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152 G RV + +D ++ G +LSQ GI V + L T + + Sbjct: 121 SSLGFSRVCIATNDTHA-LAAGGANYLSQVGINVCYIQSP----TLQHLATHLLMPFEIL 175 Query: 153 TLKIAVSQDNMIGMAGCGSVP--ITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + + I+ IS+ H R+ D I V T+ D+P+L R Sbjct: 176 RKNGRFALFKLALRLDGSYTQGRISSDISRQFTHNQRSVCDWICVSGNTLRNDNPQLNAR 235 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L ++ + + + +++ + D+ + KN Sbjct: 236 YATLPYNN---------------THLPQVGIISRTL--HRFDEIESSNIALSKNRVHFIN 278 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 D + L +G ++VEGG + HS +D I+++++ + G Sbjct: 279 DLSHFESL------QGF--VIVEGGWDLLHSLKE--FIDMILIHQA--FACDKG---ECL 323 Query: 331 EGYLEKNFMCVRRDYFGSDVCL 352 L+ +F + G D+ L Sbjct: 324 THTLKTHFKLLHTMRLGEDMAL 345 >gi|269796889|ref|YP_003316344.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM 10542] gi|269099074|gb|ACZ23510.1| riboflavin biosynthesis protein RibD [Sanguibacter keddieii DSM 10542] Length = 372 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 95/375 (25%), Positives = 132/375 (35%), Gaps = 63/375 (16%) Query: 1 MPVSSFDARF------------MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVT 47 MP D R MS AL +R S P C+++ DG V+G T Sbjct: 1 MPAEPSDTRATRPFRRHLEDAAMSRALELAREDRLAASLGPRGGCVLLGADGTVLGEART 60 Query: 48 AYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGR----------SPPCAQFIIECGI 97 HA QAL EAG A+GATA VTLEPC G PCAQ +++ G+ Sbjct: 61 DRVARVHATAQALAEAGHRAQGATAVVTLEPCCLGGDARATGPSPLPHGPCAQALVDAGV 120 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 RRVVV DPD SG G + R E A + T + Sbjct: 121 RRVVVAHLDPDPGTSG---------GAALLRGAGVEVVAASAAAADEALSLNRAWTFGVQ 171 Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--Q 215 + + + G + LRAQ D ++V VLA D L Sbjct: 172 AGRPLVTWVVEGGGSAGGPNP---DLDRLRAQVDTLVVSTWAVLAHDVSLAALGPDGHPA 228 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 P+R+++ +L I ++ RD Sbjct: 229 ARQPLRVVVGTR-ELDPGLPIFDGPGRT------------------------LHFATRDP 263 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI-PSPLEEGYL 334 L + G +L+ GG A+A F+ + LVD II + + +GG+ + L G L Sbjct: 264 ALTLAAIYDLGGRHVLLSGGTALAAEFLRAGLVDEIISHVTPEWTSQGGVGATDLGVGEL 323 Query: 335 EKNFMCVRRDYFGSD 349 V D Sbjct: 324 PDTTRLVDVRLVDDD 338 >gi|124485759|ref|YP_001030375.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanocorpusculum labreanum Z] gi|124363300|gb|ABN07108.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Methanocorpusculum labreanum Z] Length = 225 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 14/222 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + A+S D + I+G +V LRA SDAI+VGIGTVL+DDP L Sbjct: 3 PYVIINAAMSADGKLATRERKQTKISGHDDFLRVDRLRADSDAIMVGIGTVLSDDPSLRL 62 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R ++ PMR+++D K+ D + K L VI V+E A R Sbjct: 63 KSEEHAGMRKANGKDPHPMRVVIDSTAKMPADGDMFKKGLGRVVIFVSEKAQKEKCDALR 122 Query: 262 KKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +K I D DL+ +L L GV L+VEGG+ + SF++S L D I +Y ++I Sbjct: 123 EKATVISAGRDSVDLEIVLDELSKLGVEKLMVEGGSTLLWSFMSSGLFDEIRIYIGALII 182 Query: 321 GEGGIPSPLEEGYLE-----KNFMCVRRDYFGSDVCLEYIGK 357 G P+ + + V L ++ K Sbjct: 183 GGKDAPTFADGQGFTDPDDFTRLTLKDIERIDDGVLLTWVKK 224 >gi|302545542|ref|ZP_07297884.1| riboflavin biosynthesis, RibD domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302463160|gb|EFL26253.1| riboflavin biosynthesis, RibD domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 238 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 104/230 (45%), Gaps = 19/230 (8%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 E R ++ K A + D I A S IT S+ +VH LRA A +VG GT A Sbjct: 12 WHTAEGRPYVVYKYAATLDGRIAAADSTSQWITSAESRTEVHALRAACQATVVGSGTQQA 71 Query: 203 DDPELTCRLNGLQEH---------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 D+P L R P R+I+D + + D++++ A AP +I +D Sbjct: 72 DNPHLAVRSAKDDPKLKVAVPVDEQPWRVIVDSNARTPADARVLDDA--APTLIAVADDV 129 Query: 254 PVLALAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 L + + + DL KLL L GRGV + +EGG +A SF++S LVD II Sbjct: 130 DATHLEGIATVVRLPRAKEGLDLGKLLGELDGRGVRGMFLEGGPTLAASFVSSGLVDRII 189 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYIGK 357 Y + V+G G S L+ G +E +R + G DV L + Sbjct: 190 AYIAPAVLGRG--KSALQGGTIESMDDILRCELLDVSRSGPDVRLVARPR 237 >gi|52550255|gb|AAU84104.1| pyrimidine reductase [uncultured archaeon GZfos37B2] Length = 225 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 15/220 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + A+S D I +PI+G + +V L+ +DAI+VGIGTVL D+P LT Sbjct: 3 PYVFINAAMSADGKISAYTRKQIPISGEVDFRRVDRLKYGADAIMVGIGTVLTDNPSLTV 62 Query: 210 RLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 + L+ + +P+RI+ D + +D+ I+ +I+V+E+ V R Sbjct: 63 KSEELRKERRDLGTDENPIRIVADSLARTPVDADILMKGAGRRIILVSESAPGVRLDRLR 122 Query: 262 KKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + I+ DL L L GV ++VEGG ++ S + LVD++ +Y ++ Sbjct: 123 EAGAEIVVAGEHRIDLASALGRLYEMGVRRMMVEGGGSLNWSLLYQGLVDAVYVYVGNMI 182 Query: 320 IGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 +G P+ + + + +E+ Sbjct: 183 LGGESSPTLTDGTGFSGIDGACQLELISLEQMDKGFVVEW 222 >gi|225629653|ref|ZP_03787646.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591494|gb|EEH12541.1| riboflavin biosynthesis protein RibD [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 130 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 61/126 (48%), Positives = 83/126 (65%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FMS ALR + ++G + NP+V C+IVKDG ++ G T GG PHAEV AL+ A + Sbjct: 3 DDHFMSIALRLAEKNLGNVAPNPAVGCVIVKDGTIVSEGYTGIGGRPHAEVVALQNAKDS 62 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 GAT Y+TLEPC H+G + PC II+ I+RVV+ DPD RVSGRG++ L + GI V Sbjct: 63 THGATIYITLEPCCHHGVTGPCTAKIIKASIKRVVIATIDPDSRVSGRGMKALKEAGIEV 122 Query: 127 DRMMES 132 ++ + Sbjct: 123 EQGIMQ 128 >gi|57505260|ref|ZP_00371189.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis RM3195] gi|57016396|gb|EAL53181.1| riboflavin biosynthesis protein (ribG) [Campylobacter upsaliensis RM3195] Length = 327 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 71/268 (26%), Positives = 119/268 (44%), Gaps = 37/268 (13%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA--- 63 +M+ AL+ + + LT NP+V C+I+ K+ ++ G HAE+ A++EA Sbjct: 3 EFYMNLALKEAWKYQFLTYPNPAVGCVILDKNNQILSIKAHEKQGEAHAELNAIKEALKV 62 Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + + ATA+VTLEPC H G++PPCA+ ++V Sbjct: 63 LKPEFNFPKEPNVLHEFILTNHQKLLQNATAFVTLEPCVHQGKTPPCAKLFSTLEFKKVF 122 Query: 102 VCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 V V D + +++ G ++L QKGI + ++E EG+ L +L Q L ++++ Sbjct: 123 VSVKDEN-QIASGGAEFLRQKGILVEMGILEKEGRELLKPFLKWQNGTFKLFKLALSLNG 181 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPM 220 + ++ S+ H +R+ D ++VG GT+ D P L RL G +P Sbjct: 182 SAL-------GKFVSNETSRIYAHQIRSIIDLLVVGGGTLRKDRPILDSRLCG--GKAPN 232 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIV 248 IL S D I + I Sbjct: 233 LCILSRQNLESFDKTIPAFNVKNRQIFT 260 >gi|300711247|ref|YP_003737061.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus jeotgali B3] gi|299124930|gb|ADJ15269.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halalkalicoccus jeotgali B3] Length = 218 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 93/218 (42%), Gaps = 13/218 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + A S D + + I+G ++V LRA+SDA++VG+GTVLADDP LT Sbjct: 1 MDVVVNAATSADGKLSNRRREQIAISGPDDFDRVDDLRAESDAVMVGVGTVLADDPHLTV 60 Query: 210 -------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R + P R++ D + D++I+ + ++V+E Sbjct: 61 DESTSAVRTERGEPPQPARVVADSRARTPPDARILD-GVARTYLLVSEAAPTERVERLEA 119 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ +I D DL+ L G+ LLVEGG + S + LVD + ++ +I Sbjct: 120 QDARVITVGDDRVDLEDGFETLATEGIDRLLVEGGGELIFSLFEADLVDELSVFVGPTII 179 Query: 321 GEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYI 355 G P+ + + F + + V L + Sbjct: 180 GGREAPTLADGDGFVEGFPELSLESVERLDRGVVLRWR 217 >gi|288818933|ref|YP_003433281.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6] gi|288788333|dbj|BAI70080.1| riboflavin specific deaminase [Hydrogenobacter thermophilus TK-6] gi|308752520|gb|ADO46003.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Hydrogenobacter thermophilus TK-6] Length = 220 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 58/197 (29%), Positives = 95/197 (48%), Gaps = 11/197 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLA 202 R ++ + VS D + + S + + +H +RA+ D I+VG TV Sbjct: 1 MNRPYVIIVSEVSVDGKLTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN---DDPVLALA 259 D+P LT R +Q +P+RII + LD+ I + AP II+T +D V + Sbjct: 61 DNPSLTVRY--VQGKNPVRIIPCSTANVPLDANIF--SKDAPTIIITTKRAPEDKVEKIK 116 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + ++ D D KL+ +LV RG+ SL+VEGGA++ FI VD I L ++ Sbjct: 117 EVGAEVWVVGEDLVDFDKLMPMLVERGIKSLMVEGGASINWEFIKRGFVDEIRLIHLPVI 176 Query: 320 IGEGGIPSPLEEGYLEK 336 +G +P+ + +K Sbjct: 177 VGGENVPTLVGGEGFKK 193 >gi|327310583|ref|YP_004337480.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine [Thermoproteus uzoniensis 768-20] gi|326947062|gb|AEA12168.1| 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine [Thermoproteus uzoniensis 768-20] Length = 217 Score = 159 bits (403), Expect = 5e-37, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 16/222 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L AV+ D I ++ + ++H LRA+ DA+LVG GTV D+P LT Sbjct: 3 PYVYLAAAVTVDGRIASKTG-YSRLSCPVDLKRLHALRAKVDAVLVGAGTVKIDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268 R ++ +P+R+I+D + +++ ++ AP I++T P A R++ + +I Sbjct: 62 RY--VEGRNPVRVIVDGSLSVPQSARVFDSS--APTIVLTTEKAPREKVAALRERGVEVI 117 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG-- 324 D L++ L L G+ S+LVEGG + ++ LVD +++ + G G Sbjct: 118 QFPGDAVPLREALERLYASGIRSVLVEGGGRINWQMLSQCLVDELVITVTPYAFGAGTSL 177 Query: 325 IPSP----LEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 + P +E + G +V L Y + C Q Sbjct: 178 LEGPGYDDVESAPFRLRLLSAEICECGQEVVLRYRVE--CKQ 217 >gi|329766024|ref|ZP_08257585.1| deaminase-reductase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137479|gb|EGG41754.1| deaminase-reductase domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 218 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 61/203 (30%), Positives = 100/203 (49%), Gaps = 6/203 (2%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 + R H+ L A+S D I S ++ I K ++H LR++ DAILVG TV DD Sbjct: 1 MEKSRPHVILSAAISIDGKIASRSGDSK-LSSQIDKVRLHKLRSKVDAILVGKNTVQRDD 59 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFR 261 P LT R + +P+RIILD + ++SKI++T P II +++ + L Sbjct: 60 PLLTVRYT--KGKNPIRIILDSQGTIPINSKILQTCDKVPTIIAVSRKISNENLKKLNKF 117 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 I + + ++K L+T L R + ++LVEGG V FI +++ D I + S +IG Sbjct: 118 PVEIIMSGENLVNIKSLMTSLSKRKIKTILVEGGGTVNWQFIQNKMFDEIFITISPFIIG 177 Query: 322 EGGIPSPLEEGYLEKNFMCVRRD 344 + ++ +K + Sbjct: 178 GTDAVTFVQGKGFDKIIKSPKLR 200 >gi|307324661|ref|ZP_07603867.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces violaceusniger Tu 4113] gi|306889543|gb|EFN20523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Streptomyces violaceusniger Tu 4113] Length = 238 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 19/230 (8%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 V+ R + K A + D I A S IT S+ +VH LRA A +VG GT A Sbjct: 12 WHTVDGRPFVVYKYAATLDGRIAAADSTSQWITSAESRAEVHALRAACQATVVGSGTQQA 71 Query: 203 DDPELTCR---------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD 253 D+P L R + + P R+I+D + + D++++ A AP +I +D Sbjct: 72 DNPHLAVRSVKDDPKLKVAVPVDQQPWRVIVDTNARTPADARVLDDA--APTMIAVADDA 129 Query: 254 PVLALAFRKKNINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 L + + D++ LL L RGV + +EGG +A SF+++ LVD I+ Sbjct: 130 DASHLEGVATVVRLPRAKVGLDVEALLRALHRRGVRGMFLEGGPTLAASFVSAGLVDRIV 189 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYIGK 357 Y + ++G G S LE G +E +R + G DV L + Sbjct: 190 AYIAPALLGRG--KSGLEGGTIETIDDILRCELVDVARSGPDVRLIARPQ 237 >gi|126459735|ref|YP_001056013.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum calidifontis JCM 11548] gi|126249456|gb|ABO08547.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Pyrobaculum calidifontis JCM 11548] Length = 217 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 16/218 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A + D I A ++ I ++H LRA+ DA++VG T + D+P LT Sbjct: 3 PYVYLAAATTLDGRIASATG-YSRLSCPIDLRRLHELRARVDAVIVGANTAIVDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268 R ++ +PMR+++D K+ ++ + AP ++ T P + R + + + Sbjct: 62 RY--VEGRNPMRVLIDGALKVPTSLRMFDNS--APTLVFTTAKAPAEKIVELRARGVEVY 117 Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 D D +L+ L RGV +L+EGG F++ LVD ++L + + G G+ Sbjct: 118 VADGEKVDPAWVLSTLYQRGVRKVLLEGGGRTNWEFLHRCLVDEVVLTITPYIFGR-GVS 176 Query: 327 SPLEEGYLEKN-------FMCVRRDYFGSDVCLEYIGK 357 EGY K V+ G +V L Y + Sbjct: 177 LVEGEGYPTKEDMPYSLVLQSVKTCECGQEVVLTYRVQ 214 >gi|289582726|ref|YP_003481192.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Natrialba magadii ATCC 43099] gi|289532279|gb|ADD06630.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Natrialba magadii ATCC 43099] Length = 220 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 15/222 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A+S D + + I+G ++V LRA SDA++VG+GTVLADDP LT Sbjct: 1 MHVVVNAAMSADGKLSSRRREQIAISGDADFDRVDRLRADSDAVVVGVGTVLADDPHLTV 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R + +P R+++D + ++++ A A + + PV A Sbjct: 61 KDENLRDERRTNGKPANPARVVVDSSARTPSSAEVLDDA--ATTYVCVSDAAPVEQRAAL 118 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ ++I + DL + L +G+ ++VEGG + S + LVD + ++ V Sbjct: 119 AEHADLITAGEERVDLLRAFAALQEQGIERVMVEGGGELIFSLFEAGLVDDLSVFVGPKV 178 Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEYIGKN 358 IG P+ + +NF + + V L + + Sbjct: 179 IGGRDAPTLADGDGFVENFPELELGEVERLDGGVLLTWRVAD 220 >gi|213416666|ref|ZP_03349810.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 141 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIA 121 Query: 125 IVDRMMESEGKIFLHAYLTR 144 + +M SE + +L R Sbjct: 122 VSHGLMMSEAEALNKGFLKR 141 >gi|261886453|ref|ZP_06010492.1| riboflavin biosynthesis protein RibD [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 330 Score = 158 bits (399), Expect = 2e-36, Method: Composition-based stats. Identities = 75/281 (26%), Positives = 114/281 (40%), Gaps = 42/281 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEAGE---- 65 M+ A+ + LT NP+V C+I K+G ++ G PHAE+ A++ A E Sbjct: 1 MNIAINKAWEFQFLTYPNPAVGCVITGKNGEILSINAHEKAGMPHAELNAIKYALEMKNP 60 Query: 66 -------------------------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 G+TAYVTLEPCSH GR+PPCA + E G ++V Sbjct: 61 AFKQDFDEIKDTNELYNFIMQNHSNLLNGSTAYVTLEPCSHQGRTPPCANLLKELGFKQV 120 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEG-KIFLHAYLTRQVEKRSHITLKIAVS 159 ++ D + G Q L GI + E L +L + S + + Sbjct: 121 IIGAIDS-SENAKGGEQILKNSGIKTKIGVCKEKADELLEPFLAWSLGNFSFFKIALTQ- 178 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 G+A G I+ S+ H LR+ D +++G TV D P L RL +P Sbjct: 179 ----NGIASGGV--ISNLQSRTHSHKLRSLVDMLVIGGNTVRTDRPLLDTRLV-KNGKNP 231 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 ++ K + +L +IV+ + D V F Sbjct: 232 DILLYSKESKFDTTIPLFN--ILDRRVIVSNSLDAVFERKF 270 >gi|257051630|ref|YP_003129463.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halorhabdus utahensis DSM 12940] gi|256690393|gb|ACV10730.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Halorhabdus utahensis DSM 12940] Length = 220 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 54/205 (26%), Positives = 86/205 (41%), Gaps = 11/205 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A+S D + V I+G ++V LRA SDA++VG+GTVLADDP LT Sbjct: 1 MHVVVNAAMSADGKLSTHDREQVAISGEADFDRVDGLRADSDAVMVGVGTVLADDPSLTV 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R + P R++ D + D++I+ ++V E Sbjct: 61 DDPDRIAQRGDRGDPPQPARVVADSRARTPPDAQILDDEAE-TYLVVGERAATEKVERLE 119 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +I D DL L L G+ L+VEGG + S LVD + ++ ++ Sbjct: 120 STGATVIAAGHDRVDLSAGLDALESHGIDRLMVEGGGELIFSLFADDLVDELSVFVGPML 179 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRD 344 IG P+ + + F + Sbjct: 180 IGGRDAPTLADGDGFLEGFPVLDLR 204 >gi|126465369|ref|YP_001040478.1| deaminase-reductase domain-containing protein [Staphylothermus marinus F1] gi|126014192|gb|ABN69570.1| bifunctional deaminase-reductase domain protein [Staphylothermus marinus F1] Length = 227 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 12/218 (5%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 +R ++ + +S D + + G ++ ++H R+ DA++VG TV+ DD Sbjct: 1 MKLERPYVLVFSTISVDGGLSVKGKKYK-LSSDRDLYRLHYFRSIVDAVMVGANTVIIDD 59 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKK 263 P LT RL G + P RI++D +++ K+ T ++I + N D + F K Sbjct: 60 PLLTIRLPGYKGKQPYRIVIDGKLRVTPKYKVFNTKYAPTILITSISNKDREIIKRFTSK 119 Query: 264 NINIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + +++ D DL+K + L + +L+EGG + S + ++L+D + L Sbjct: 120 GVKVLFIDTDKNDPSKLDLRKAVEKLYREFYIRKILIEGGGQLLASLLKNKLIDELYLSI 179 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLE 353 S ++IG + L E +LE V ++ F + E Sbjct: 180 SPLIIGLN--KTSLIEDFLESPLKLVLKNIFIDHITGE 215 >gi|171186187|ref|YP_001795106.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermoproteus neutrophilus V24Sta] gi|170935399|gb|ACB40660.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Thermoproteus neutrophilus V24Sta] Length = 217 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 57/223 (25%), Positives = 99/223 (44%), Gaps = 18/223 (8%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A + D I ++ ++H LRA DA++VG T + D+P LT Sbjct: 3 PYVYLAAAATIDGRIASKTG-YSRLSCPHDLRRLHALRAAVDAVIVGANTAIVDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE-NDDPVLALAFRKKNINII 268 R ++ +P+R+++D K D ++ ++ +P I+ T P A + + + + Sbjct: 62 RY--VEGRNPLRVLIDGSLKAPTDLRMFDSS--SPTIVFTTRKAPPEKAAELKARGVEVY 117 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--- 323 D D ++L +L RGV L+EGG F++ LVD I+L + V G G Sbjct: 118 VAEGDQVDPAEVLNVLYQRGVRKALLEGGGRTNWEFLSKCLVDEIVLTVTPYVFGSGVSL 177 Query: 324 ----GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCLQ 362 G P+ E+ ++ G +V L Y + C Q Sbjct: 178 VEGAGFPT-KEDAPFTLTLTSIKLCECGQEVVLTYRVR--CKQ 217 >gi|224130250|ref|XP_002320789.1| predicted protein [Populus trichocarpa] gi|222861562|gb|EEE99104.1| predicted protein [Populus trichocarpa] Length = 199 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 62/180 (34%), Positives = 99/180 (55%), Gaps = 14/180 (7%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M + +R +G TS +P V C+IVK G PHAEV AL +AG+ Sbjct: 30 DDGFYMRRCVELARKAIGCTSPSPMVGCVIVK------------AGQPHAEVFALRDAGD 77 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 A ATAYV+LEPC+HYGR+PPC++ +++ ++ VV+ + DP+ V+ RG+Q L GI Sbjct: 78 VAENATAYVSLEPCNHYGRTPPCSEVMVKAKLKEVVIGMIDPNPIVATRGVQRLRDAGID 137 Query: 126 VDRMMESEGKIFL-HAYLTRQVEKRSHITLKIAVSQDNM-IGMAGCGSVPITGFISKNQV 183 V +E E L A++ + + + +TL+ ++S + + G G G+ S+ Sbjct: 138 VVVGVEEELCKRLIEAFIHKMLTGKPFVTLRYSLSINGHPLNQLGEGVTDSGGYHSQQMA 197 >gi|18313740|ref|NP_560407.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum aerophilum str. IM2] gi|18161296|gb|AAL64589.1| riboflavin specific deaminase, putative [Pyrobaculum aerophilum str. IM2] Length = 227 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 9/201 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L AV+ D I ++ ++H LRA+ DA++VG T + D+P LT Sbjct: 3 PYVYLMAAVTIDGRIASKSG-YSRLSCPHDLKRLHALRAEVDAVIVGANTAIIDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINII 268 R +P R+++D + +I AP I+ T N P + R+ I ++ Sbjct: 62 RYAA--GRNPTRVLIDGALRAPTTLRIFD--KTAPTIVYTTNLAPAEKINELRRLGIEVV 117 Query: 269 YCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 D +L+ L RGV +L+EGG FI+ LVD +I+ + V G G+ Sbjct: 118 VFPSHRVDPASVLSDLYNRGVRKVLIEGGGRTNWEFISKCLVDEVIVTVTPYVFGS-GVS 176 Query: 327 SPLEEGYLEKNFMCVRRDYFG 347 EG+ + M G Sbjct: 177 LVEGEGFKDIEEMPFNLKLLG 197 >gi|157164068|ref|YP_001466380.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826] gi|112801624|gb|EAT98968.1| riboflavin biosynthesis protein RibD [Campylobacter concisus 13826] Length = 353 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 66/279 (23%), Positives = 105/279 (37%), Gaps = 56/279 (20%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGI-VIGRGVTAYGGCPHAEVQA------ 59 D +M AL + LT NP+V CL++ + ++ G HAE A Sbjct: 3 DEFYMGLALSEAWKFQILTYPNPAVGCLVLDENEQILSCKAHEKAGYLHAEPTAILFALC 62 Query: 60 ---------------------------------------LEEAGEEARGATAYVTLEPCS 80 L + + AYVTLEPCS Sbjct: 63 KKSEKFKDDFIKAYNAKFSSDIKENEFGLLEPKFSYEFILNNHSNLLKNSKAYVTLEPCS 122 Query: 81 HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLH 139 H+G++PPCA + E G V++ D + +++ G L G+ + +++ L Sbjct: 123 HHGKTPPCANLLKELGFSDVIIGSHDEN-KIASGGGNLLQSAGVNVKFGILKERCDKLLE 181 Query: 140 AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGT 199 +L Q S + + ++ G+A G IT +S+ VH LR+ D +++G T Sbjct: 182 PFLAYQNGGFSFLKIALS-----KNGVASGGI--ITNELSRTHVHKLRSVIDTLVIGGNT 234 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 V D P L RL +P II K + Sbjct: 235 VRTDRPRLDTRL-IKNGKNPDIIIYSRSDKFDETLPLFS 272 >gi|254459001|ref|ZP_05072424.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium GD 1] gi|207084272|gb|EDZ61561.1| riboflavin biosynthesis protein RibD [Campylobacterales bacterium GD 1] Length = 336 Score = 157 bits (397), Expect = 3e-36, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 136/373 (36%), Gaps = 78/373 (20%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 F++ AL+ + + GLT NP+V C IV ++ G PHAEV AL A + Sbjct: 7 FFINLALKEAWKYQGLTYPNPAVGCTIVSPKNELLSVEAHKKSGLPHAEVMALRTAYFKL 66 Query: 68 ---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 R + Y TLEPCSH G++P CA I GI++V Sbjct: 67 TNDSKILELTSSSEIHTFLLNNHNNCFRDISLYTTLEPCSHIGKTPSCASLISALGIKKV 126 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V +D + SG + L + G+ + ++E + + + + +K ++ Sbjct: 127 FVGFNDINEEASGGT-EILKKSGVDVQSSILEKKAYDLIAPFNKWKEDKFVFFKWAQRLN 185 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 + I+ S+ VH +R D +++G TV D P L RL + +P Sbjct: 186 G-------STDAGTISSIESRINVHKMRNVCDLLVIGGNTVREDRPTLDARL--VHGKAP 236 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 +I+ + + + D LL Sbjct: 237 DVLIISRKKEFDKSIALF--------------------------GVEGREVFIEDNFSLL 270 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM 339 ++++EG + + + +VD + Y + + G+ G +E+ F Sbjct: 271 N-----NYKNIMIEGSSNMFE--LTKDIVDYYLCYLAPTIGGKSGFE------KVEEKFE 317 Query: 340 CVRRDYFGSDVCL 352 + D D+ + Sbjct: 318 ILNIDQEDQDIIM 330 >gi|145591565|ref|YP_001153567.1| hypothetical protein Pars_1352 [Pyrobaculum arsenaticum DSM 13514] gi|145283333|gb|ABP50915.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Pyrobaculum arsenaticum DSM 13514] Length = 224 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 94/217 (43%), Gaps = 14/217 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + AV+ D I ++ ++H +RA DA++VG T + D+P LT Sbjct: 3 PRVYMMAAVTVDGRIASKTG-YSKLSCPYDLRRLHAMRAMVDAVVVGANTAITDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINII 268 R + +P+R+++D + D ++ A I+ T + P ++K I ++ Sbjct: 62 RY--AEGRNPIRVLIDGALRAPTDLRLFD--RSALTIVFTTSKAPSEKIKELQEKGIEVV 117 Query: 269 YCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321 + D +++ L RGV +L+EGG F+ LVD +I+ + V G Sbjct: 118 VTEGSAVDPAEVVAHLSKRGVEKVLLEGGGKTNWEFLKRCLVDELIITVTPYVFGRGVSL 177 Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +G + EE E + + G ++ L Y K Sbjct: 178 VDGEGFADTEEAPFELRLIEAKLCQCGREIVLHYEVK 214 >gi|226288491|gb|EEH44003.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb18] Length = 665 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + +TL A S D + + ++G SK H LR++ DAIL+G+GT + Sbjct: 384 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 443 Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248 AD+P L CRL + P II+DP + S + ++++TA AP IIV Sbjct: 444 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 503 Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P L + + + + + +L L G+ S+++EGGA V Sbjct: 504 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 563 Query: 301 SFINS---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDV 350 +N VDS+I+ + +G GG+ + + +R G DV Sbjct: 564 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKDV 623 Query: 351 CL 352 L Sbjct: 624 VL 625 >gi|15790310|ref|NP_280134.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium sp. NRC-1] gi|169236043|ref|YP_001689243.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium salinarum R1] gi|10580782|gb|AAG19614.1| riboflavin-specific deaminase [Halobacterium sp. NRC-1] gi|167727109|emb|CAP13894.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halobacterium salinarum R1] Length = 220 Score = 156 bits (395), Expect = 4e-36, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 92/219 (42%), Gaps = 16/219 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208 H+ + A+S D + V ++G +V LRA DA++VG+GTVLADDP LT Sbjct: 1 MHVVVNAAMSADGKLSTRRREQVTLSGDADFERVDELRASVDAVMVGVGTVLADDPSLTL 60 Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAF 260 R + P R++ D H + D++++ A A ++ +PV + Sbjct: 61 DDSGHVAAREERGESPHPARVVADSHARTPPDARLLDGA--AETYVLVAEAEPVEHRESL 118 Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 ++ + DL L L RGV L+VEGG + S LVD + ++ + Sbjct: 119 EAAGATVVVAGENRVDLPSALDALESRGVDRLMVEGGGELIFSLFAEELVDELSVFVAPQ 178 Query: 319 VIGEGGIPSPLEEGYLE---KNFMCVRRDYFGSDVCLEY 354 +IG P+ + F D V L Y Sbjct: 179 LIGGRDAPTLADGDGFVAEFPTFELTGVDRLDDGVLLAY 217 >gi|225681364|gb|EEH19648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb03] Length = 668 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 62/242 (25%), Positives = 103/242 (42%), Gaps = 31/242 (12%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + +TL A S D + + ++G SK H LR++ DAIL+G+GT + Sbjct: 387 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 446 Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248 AD+P L CRL + P II+DP + S + ++++TA AP IIV Sbjct: 447 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 506 Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P L + + + + + +L L G+ S+++EGGA V Sbjct: 507 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 566 Query: 301 SFINS---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDV 350 +N VDS+I+ + +G GG+ + + +R G DV Sbjct: 567 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDGTGKAISALDPRDIRWQSLGKDV 626 Query: 351 CL 352 L Sbjct: 627 VL 628 >gi|310792224|gb|EFQ27751.1| riboflavin-specific deaminase domain-containing protein [Glomerella graminicola M1.001] Length = 269 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 105/231 (45%), Gaps = 25/231 (10%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + R +TL A S D+ + +A ++G SK H LR Q DAILVG+GTVLADDP Sbjct: 31 QSRPFVTLTFATSLDSSLSLAPGVRTRLSGPESKAMTHHLRRQHDAILVGVGTVLADDPG 90 Query: 207 LTCRLNGLQ-EHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIV--TENDDPVLA 257 L CR+ G + P I++DP + +K+ + A AP +++ T Sbjct: 91 LNCRIAGAGLDAQPRPIVVDPRGRWDFTEHNKVFEVARAGKGLAPFVLIGSTAAVHSKKK 150 Query: 258 LAFRKKNINIIYCDCR------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLV 308 + D + D + +L++L G+ S++VEGG V +S +N + V Sbjct: 151 SILEAHGGKFVVLDAKETEPRFDWQSILSVLHSEGLHSVMVEGGGQVINSLLNPDSQQFV 210 Query: 309 DSIILYRSQIVIGEGG-------IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 D++I+ + +G GG + +P V FG D+ L Sbjct: 211 DTVIVTVAPTWLGRGGVVVSPERVHTPDGTPVPAARLANVAWHQFGEDIVL 261 >gi|289548666|ref|YP_003473654.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Thermocrinis albus DSM 14484] gi|289182283|gb|ADC89527.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Thermocrinis albus DSM 14484] Length = 220 Score = 155 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 13/204 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +I + V+ D + + S + + +H +RA+ D I+VG TV D+P Sbjct: 3 PYIIIVSEVTVDGKLTLYRGASSKELMTLMDQEAYRYLHEIRAKVDGIMVGCETVRTDNP 62 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF---RK 262 LT R ++ +P+R+I + LD+ I + AP IIVT P + Sbjct: 63 SLTVRY--VEGKNPIRVIPCSTANVPLDANIF--SKDAPTIIVTTLRAPEERIQRIRELG 118 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + ++ D D KL+ +L RG+ SL+VEGGA++ I VD I L +V+G Sbjct: 119 AEVWVVGEDLVDFDKLMPLLYERGIKSLMVEGGASINWELIKRGYVDEIRLIHLPVVVGG 178 Query: 323 GGIPSPLEEGYLE--KNFMCVRRD 344 +P+ + + KN + +R Sbjct: 179 ENVPTLVGGEGFKSLKNLLHLRLR 202 >gi|317025956|ref|XP_001388634.2| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus niger CBS 513.88] Length = 337 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 33/253 (13%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + TL A S D+ + ++ ++G SK H LR++ DA Sbjct: 77 EPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHYLRSRHDA 136 Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKL--SLDSKII----KT 239 IL+G+GT +AD+P L CRL G+ + P II+DP + + SKI Sbjct: 137 ILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKIFELARNG 196 Query: 240 ALLAPVIIVTENDDPVL--ALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288 AP II P I D LL LV G+ Sbjct: 197 RGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRIDWTALLECLVREGLR 256 Query: 289 SLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKNFM 339 S+++EGG ++ +S + LVDS+I+ + +G+GG+ P EG + Sbjct: 257 SVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRVEGGMVVPASRLT 316 Query: 340 CVRRDYFGSDVCL 352 V+ FG DV L Sbjct: 317 GVKWYPFGEDVVL 329 >gi|154305619|ref|XP_001553211.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10] gi|150853143|gb|EDN28335.1| hypothetical protein BC1G_07624 [Botryotinia fuckeliana B05.10] Length = 281 Score = 155 bits (393), Expect = 8e-36, Method: Composition-based stats. Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 27/229 (11%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H TL A S D+ I M P++G SK H LR++ DAIL+G+ T +AD+P L C Sbjct: 37 PHTTLTFATSMDSQITMRPGIGSPLSGPASKAMTHYLRSKHDAILIGVNTAIADNPSLNC 96 Query: 210 RLNGLQEH--------SPMRIILDPHFKLSL--DSKII----KTALLAPVIIVTENDDP- 254 R+ G+ + P +I+DP + + DSKI AP II + +D Sbjct: 97 RIEGVGGYGGGENLKGQPRPVIIDPKGRWNFGEDSKIFGLVKDGRGKAPWIITAQQEDEI 156 Query: 255 --VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR- 306 R + I+ + +L L G+ SL++EGGA + + + Sbjct: 157 SFEKKDLLRATSGKFIHLSPDKEGRFSWQDILEALWKEGIESLMIEGGAGIINDMLAEGQ 216 Query: 307 -LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVC 351 +D +I+ + + +G+GG+ P G V+ G DV Sbjct: 217 VFIDGVIVTIAPVWLGKGGVAVLPEREAPGNETFRLRGVKWIPLGEDVV 265 >gi|295671871|ref|XP_002796482.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb01] gi|226283462|gb|EEH39028.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Paracoccidioides brasiliensis Pb01] Length = 655 Score = 155 bits (392), Expect = 9e-36, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 105/242 (43%), Gaps = 31/242 (12%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 + +TL A S D + + ++G SK H LR++ DAIL+G+GT + Sbjct: 375 RHENGRQFPFVTLTYASSMDARVSLLPGVQTALSGPESKLMTHYLRSRHDAILIGVGTAM 434 Query: 202 ADDPELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIV 248 AD+P L CRL + P II+DP + S + ++++TA AP IIV Sbjct: 435 ADNPGLNCRLEGSGGFGGLGKMWQPRPIIVDPTGRWSADPECRLLRTAKEGKGKAPWIIV 494 Query: 249 TENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAH 300 + + P L + + + + + +L L G+ S+++EGGA V Sbjct: 495 SPGANIQPAKVLRLKTHGGDYLRIVEYNQSWRLRWEAILRALGTEGINSVMIEGGATVIS 554 Query: 301 SFINS---RLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDV 350 +N VDS+I+ + +G GG+ SP + + +R G DV Sbjct: 555 ELLNPEYVDFVDSLIVTVAPTFLGRGGVGVSPDSKKDETGKAINALDPRDIRWQSLGKDV 614 Query: 351 CL 352 L Sbjct: 615 VL 616 >gi|302673289|ref|XP_003026331.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8] gi|300100013|gb|EFI91428.1| hypothetical protein SCHCODRAFT_71199 [Schizophyllum commune H4-8] Length = 273 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 67/259 (25%), Positives = 104/259 (40%), Gaps = 37/259 (14%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L Y + R +TL A S D I G + ++G S H +R DAIL+G+ Sbjct: 15 LAGYDLKHHADRPSVTLTFAQSLDAKIAGTGGKQLILSGKESMIMTHWMRTMHDAILIGV 74 Query: 198 GTVLADDPELTCR--------------LNGLQEHSPMRIILDPHFKLSLDSKI---IKTA 240 GT L DDP+L R +G + P +ILD +LS K+ ++ Sbjct: 75 GTALNDDPQLNARHLPARSPGTYESSSEHGQPYNLPRPVILDARLRLSPSCKLLGNFQSG 134 Query: 241 LLAPVIIVTENDDP-----------VLALAFRKKNINIIYCDCR------DLKKLLTILV 283 + T + A + ++ ++ LL L Sbjct: 135 TGRRPWVFTLDGSASPNPLQQVEWLERKQALEEAGARVVIVKGDLGNGTLSIQALLKTLH 194 Query: 284 GRGVTSLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMC 340 RGV SL+VEGGA+V SF+++ +VD+II+ + +GE G+ ++ G F Sbjct: 195 ERGVHSLMVEGGASVIKSFLDASQGGVVDTIIVTVAPTFVGEDGVGYGVQLGESGGKFKH 254 Query: 341 VRRDYFGSDVCLEYIGKNL 359 V G D K+L Sbjct: 255 VSTQVVGVDTVFVLGPKDL 273 >gi|317157692|ref|XP_001826523.2| riboflavin-specific deaminase [Aspergillus oryzae RIB40] Length = 637 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L Sbjct: 380 QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 439 Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252 CRL + P +I+DP + + ++++TA AP ++V+ Sbjct: 440 NCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 499 Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 P + + + + + + +L L GV S+++EGG V +N Sbjct: 500 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPE 559 Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 + +DSII+ + +G GG+P + E+ N V+ G +V + Sbjct: 560 YTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 615 >gi|119473533|ref|XP_001258642.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya fischeri NRRL 181] gi|119406795|gb|EAW16745.1| riboflavin biosynthesis protein Rib7, putative [Neosartorya fischeri NRRL 181] Length = 280 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 102/236 (43%), Gaps = 33/236 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L C Sbjct: 39 PFTTLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98 Query: 210 RLN-------GLQEHSPMRIILDPHFKLSLD--SKIIKTA----LLAPVIIVTENDDPVL 256 R+ E P I++DP + SKI+ A AP II P Sbjct: 99 RIAGVGGYGGQGLEGQPRPIVIDPSARWDFTESSKILTLAWEGRGRAPFIITGAQAVPAE 158 Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 A + I D D LL L G+ S+++EGGA + +S + Sbjct: 159 KKALLERHGGKFISLDVVTSETGEHRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218 Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 L+DS+I+ + +G+GG+ + + E+ V+ FG DV L Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPKRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274 >gi|325092207|gb|EGC45517.1| riboflavin-specific deaminase [Ajellomyces capsulatus H88] Length = 684 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT + D+P Sbjct: 390 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTAMVDNP 449 Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL + P II+DP + + +++KTA AP ++V+ Sbjct: 450 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 509 Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P LA + + + + + +L L G+TS+++EGGA V +N Sbjct: 510 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 569 Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG+ + N ++ G DV + Sbjct: 570 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 627 >gi|70985705|ref|XP_748358.1| riboflavin biosynthesis protein Rib7 [Aspergillus fumigatus Af293] gi|66845987|gb|EAL86320.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus fumigatus Af293] Length = 280 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L C Sbjct: 39 PFTTLTFATSLDSALALSPGAKTALSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98 Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDDPVL 256 R+ E P I++DP + +SKI+ A AP I+ P Sbjct: 99 RIAGVGGYGGQGLEGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAE 158 Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 A + I D D LL L G+ S+++EGGA + +S + Sbjct: 159 KKALLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218 Query: 305 -SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352 L+DS+I+ + +G+GG + SP V+ FG DV L Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274 >gi|262196785|ref|YP_003267994.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium ochraceum DSM 14365] gi|262080132|gb|ACY16101.1| 5-amino-6-(5-phosphoribosylamino)uracilreductase [Haliangium ochraceum DSM 14365] Length = 319 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 5/238 (2%) Query: 120 SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 G I D R + +A S D I A S I+G Sbjct: 82 RAAGEIEDAAARLLDLYLPLVLARAPAGGRPRVIAHLAQSLDGRIATACGTSQWISGNQD 141 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H +RA DA+LVG TV+ DDP+LTCR ++ P R++LDP ++S + +I + Sbjct: 142 LVHNHRMRALCDAVLVGAETVIHDDPQLTCR--EVEGAHPTRVVLDPRGRVSAERRIFQD 199 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + V+I + + L + + +L L G+ L VEGG Sbjct: 200 RVAPTVVIGNQEGEHALPAHVTRLQVGTPGARIA-PGDILDALAVHGIHRLFVEGGGLTV 258 Query: 300 HSFINSRLVDSIILYRSQIVIGEGGIPSPLEE-GYLEKNFMC-VRRDYFGSDVCLEYI 355 +F+ + L+D + + + ++IG G L + LE VRR F +DV E + Sbjct: 259 SAFLQAGLLDRLQITVAPMIIGSGRASISLPDIDSLEHALRPEVRRFVFDTDVMFECV 316 >gi|55377942|ref|YP_135792.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloarcula marismortui ATCC 43049] gi|55230667|gb|AAV46086.1| 25-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Haloarcula marismortui ATCC 43049] Length = 219 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 92/218 (42%), Gaps = 14/218 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A+S D + + I+G ++V LRA SDA++VG+GT+LADDP LT Sbjct: 1 MHVIVNAAMSVDGKLSSRRREQIAISGPDDFDRVDQLRADSDAVMVGVGTILADDPSLTV 60 Query: 210 RLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 + +P R+I D + D+ ++ ++V+E P Sbjct: 61 DDADRRAARAERGDPENPARVIADSRIRTPPDATVLD-GRAQTYLLVSEAAPPDFIEEME 119 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +I D DL L L G G+ L+VEGG + S + LVD + +Y V Sbjct: 120 DAGAYVIAAGQDRVDLTTTLAKLEGDGIDQLMVEGGGELIFSLLEEALVDELFVYVGPKV 179 Query: 320 IGEGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354 IG P+ + ++F + V L + Sbjct: 180 IGGRDAPTLADGDGFIEDFPEPELADVERVDDGVVLHW 217 >gi|108805370|ref|YP_645307.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Rubrobacter xylanophilus DSM 9941] gi|108766613|gb|ABG05495.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Rubrobacter xylanophilus DSM 9941] Length = 230 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 53/216 (24%), Positives = 92/216 (42%), Gaps = 11/216 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +TL A + D + A S I+ S + H LRA DA++VG+GTV DDP Sbjct: 5 PNHLPTVTLSYAQTLDGRLATAAGSSQWISCESSLARAHALRAGHDAVMVGVGTVCRDDP 64 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKN 264 LT RL + +P+R+++D + + ++ ++ VTE + Sbjct: 65 RLTVRL--VPGENPLRVVVDSTLRTPPSAAVLSDGGAGRTVLAVTERASRERCARAERLG 122 Query: 265 INIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ +L LL L GV S++VEGGA++ SF+ RL D + + + + Sbjct: 123 ARVLRLPEDGEGRVELAALLAALWESGVRSVMVEGGASLITSFLRERLADRLAVCVAPKL 182 Query: 320 IGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 +G G + + G+D+ + Sbjct: 183 LGRGIEAVGELGIRDLGGALRLEETSVTLCGTDILV 218 >gi|119871899|ref|YP_929906.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrobaculum islandicum DSM 4184] gi|119673307|gb|ABL87563.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Pyrobaculum islandicum DSM 4184] Length = 217 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 57/214 (26%), Positives = 96/214 (44%), Gaps = 14/214 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A + D I ++ ++H +RA DAI+VG T + D+P LT Sbjct: 3 PYVYLVAATTIDGRIASYTG-YSRLSCPYDLKRLHSIRASVDAIIVGANTAIVDNPRLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNIN 266 R ++ +PMR+++D + L +I ++ AP ++ T + P + L R I Sbjct: 62 RY--VEGKNPMRVLIDGALRAPLTLRIFDSS--APTVVFTTHKAPQDKIHELQKRGVKIY 117 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG----- 321 I + D +L L +GV +L+EGG F++ LVD IIL + V G Sbjct: 118 ITEGETVDPAYVLDTLYKQGVRKVLLEGGGRTNWEFLSKCLVDEIILTVTPYVFGRGVSL 177 Query: 322 -EGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 EG + E+ ++ G +V L+Y Sbjct: 178 VEGAGFATTEDTPFALTLHSIKLCECGQEVVLKY 211 >gi|297526352|ref|YP_003668376.1| bifunctional deaminase-reductase domain protein [Staphylothermus hellenicus DSM 12710] gi|297255268|gb|ADI31477.1| bifunctional deaminase-reductase domain protein [Staphylothermus hellenicus DSM 12710] Length = 225 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 54/218 (24%), Positives = 101/218 (46%), Gaps = 12/218 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R +I + +S D + + G ++ ++H R+ DA++VG TV+ DDP Sbjct: 1 MERPYILVFSTISVDGGLSVKGKRYR-LSSDRDIYRLHYFRSIVDAVMVGANTVIIDDPL 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNI 265 LT RL + P R+++D ++ + ++ T ++I + N D + F + + Sbjct: 60 LTVRLPDYKGKQPYRVVVDGKLRVMPELRVFDTRHAPTILITSINNKDREMIRRFLSRGV 119 Query: 266 NIIYCDCR-------DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 I++ D DL+K + L + +LVEGG + S +RL+D + L S Sbjct: 120 RILFVDTDKYDPSKIDLRKAVEKLYREFSIRKILVEGGGQLIASLFKNRLIDELYLSISP 179 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 ++IG + L E +L+ V ++ F + E I Sbjct: 180 LIIGLN--KTSLIEDFLDSPVRLVLKNIFVDHITGEII 215 >gi|126179344|ref|YP_001047309.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] gi|125862138|gb|ABN57327.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoculleus marisnigri JR1] Length = 228 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 15/220 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLA 202 R H+ + ++ D + + S I ++ +H RA+ DAI+VG T+ Sbjct: 4 HDRPHVLMMSEITVDGKLTLKRGASSKILMKYMAPETELLLHQTRAEYDAIMVGANTIRI 63 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+ LT RL ++ SP+R+I + D+ ++ VI V+E R+ Sbjct: 64 DNSFLTVRL--VEGKSPLRVIPSSRADIPPDANVL-GPDARTVIAVSEAAPAENVARLRE 120 Query: 263 KNINIIYCDCR--DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++++ + DL +L+ IL GV +++EGG + + +N RLVD I L + Sbjct: 121 SGVDVVVAGEKEVDLPELMGILKRDYGVDRMMIEGGPTLNWAMLNHRLVDEIRLIHLPFI 180 Query: 320 IGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 +G PS + ++E R GS++ E+ Sbjct: 181 VGGADTPSLVGGMHIETEEEMFRLSLKRHFMCGSNLVTEW 220 >gi|110668419|ref|YP_658230.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum walsbyi DSM 16790] gi|109626166|emb|CAJ52622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haloquadratum walsbyi DSM 16790] Length = 229 Score = 155 bits (391), Expect = 2e-35, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 92/218 (42%), Gaps = 15/218 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A+S D + V I+G +V LRA +DAILVGIGTVLADDP L Sbjct: 1 MHVVVNAAISIDGKLSTRRREQVAISGERDFERVSELRANNDAILVGIGTVLADDPHLVV 60 Query: 210 RLNGLQEHS-------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA---LA 259 + + P RII+D + D++++ AP I+ P L Sbjct: 61 EGSYRKRRQDQGLIPTPHRIIIDSRARTPTDAEVLDDE--APTYIIVSESAPTSRQADLE 118 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 N+ I D + L+ L G++S++VEGG + S + LVD + +Y ++ Sbjct: 119 VEGANVMIAGRDRVSMPAALSALADSGMSSIMVEGGGEIIFSLFEANLVDELSVYVGSML 178 Query: 320 IGEGGIPSPLEEGYL---EKNFMCVRRDYFGSDVCLEY 354 IG P+ + V L+Y Sbjct: 179 IGGRDAPTLADGDGFIDDPTQLQLTSVKQIDDGVLLQY 216 >gi|317034868|ref|XP_001400638.2| riboflavin-specific deaminase [Aspergillus niger CBS 513.88] Length = 654 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 31/241 (12%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLA Sbjct: 395 HNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLA 454 Query: 203 DDPELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVT 249 D+P L CRL G P +++DP + D ++++TA AP ++V+ Sbjct: 455 DNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVVVS 514 Query: 250 END--DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHS 301 DP + + + + + + +L L G+ S+++EGG V Sbjct: 515 PGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSE 574 Query: 302 FIN---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVC 351 +N + +DSII+ + +G GG+ + ++ N V+ G +V Sbjct: 575 LLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQNVI 634 Query: 352 L 352 + Sbjct: 635 M 635 >gi|134081305|emb|CAK41808.1| unnamed protein product [Aspergillus niger] Length = 651 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 107/241 (44%), Gaps = 31/241 (12%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLA Sbjct: 392 HNDRRQFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLA 451 Query: 203 DDPELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVT 249 D+P L CRL G P +++DP + D ++++TA AP ++V+ Sbjct: 452 DNPGLNCRLEGAGGFGGLGRMWQPRPVVVDPTGRWPVHPDCRMLRTAVEGKGKAPWVVVS 511 Query: 250 END--DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHS 301 DP + + + + + + +L L G+ S+++EGG V Sbjct: 512 PGARIDPQKLMMLKGYGGDYLRIMEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSE 571 Query: 302 FIN---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVC 351 +N + +DSII+ + +G GG+ + ++ N V+ G +V Sbjct: 572 LLNPEYTEFIDSIIVTVAPTYLGSGGVSVSPDSKRDQEGKPNAALNPRDVKWTPLGQNVI 631 Query: 352 L 352 + Sbjct: 632 M 632 >gi|171690512|ref|XP_001910181.1| hypothetical protein [Podospora anserina S mat+] gi|170945204|emb|CAP71315.1| unnamed protein product [Podospora anserina S mat+] Length = 260 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 20/223 (8%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+TL A S D + +A ++G SK+ H LR + +AILVG T L D+P L Sbjct: 31 PHLTLTYATSLDASLSLAPGVRTTLSGPYSKSMTHYLRTRHNAILVGCTTALVDNPALNS 90 Query: 210 RLNGLQ--EHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDD-PVLALAF 260 RL + + P IILDP + DS++I+ A P ++ + Sbjct: 91 RLGSITSLDQQPRPIILDPKGRWDFTEDSQVIRLAAEFKGKGPWVVTKRGGETKERGELL 150 Query: 261 RKKNINIIYCDCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSII 312 + + + + +L++L +GV S++VEGG V +S + +RLVDS+I Sbjct: 151 ERVGGKFLVLETGEDGRFKWGDVLSVLGEQGVRSVMVEGGGEVINSLLIDPENRLVDSVI 210 Query: 313 LYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + +G+GG+ PS + + V G DV L Sbjct: 211 ITIAPTWLGKGGVVVSPSRQQGQTSQLKLRDVSWQPHGEDVVL 253 >gi|134054726|emb|CAK43566.1| unnamed protein product [Aspergillus niger] Length = 275 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 69/253 (27%), Positives = 103/253 (40%), Gaps = 33/253 (13%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + TL A S D+ + ++ ++G SK H LR++ DA Sbjct: 15 EPHLPPKYGNPSSSSSLPFTTLTFATSLDSQLALSPGTRTVLSGPQSKAMTHYLRSRHDA 74 Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKL--SLDSKII----KT 239 IL+G+GT +AD+P L CRL G+ + P II+DP + + SKI Sbjct: 75 ILIGVGTAVADNPGLNCRLAGVGGYGSEGLAGQPRPIIIDPSARWEFTAHSKIFELARNG 134 Query: 240 ALLAPVIIVTENDDPVL--ALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288 AP II P I D LL LV G+ Sbjct: 135 RGRAPFIITAAETVPSAPQREVLESHGGKFIALPVGVGSDGAHRIDWTALLECLVREGLR 194 Query: 289 SLLVEGGAAVAHSFINSR---LVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKNFM 339 S+++EGG ++ +S + LVDS+I+ + +G+GG+ P EG + Sbjct: 195 SVMIEGGGSIINSLLEPGCQTLVDSVIVTIAPTWLGQGGVVVSPRRRVEGGMVVPASRLT 254 Query: 340 CVRRDYFGSDVCL 352 V+ FG DV L Sbjct: 255 GVKWYPFGEDVVL 267 >gi|238501136|ref|XP_002381802.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus NRRL3357] gi|220692039|gb|EED48386.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus flavus NRRL3357] Length = 273 Score = 154 bits (389), Expect = 2e-35, Method: Composition-based stats. Identities = 67/253 (26%), Positives = 105/253 (41%), Gaps = 33/253 (13%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + + TL A S D+ + +A ++G SK H LR++ DA Sbjct: 17 EPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRSRHDA 76 Query: 193 ILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL--DSKIIK----T 239 IL+G+GT +AD+P L CR+ P I++DP + SKI+ Sbjct: 77 ILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILDLVQEG 136 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDC---------RDLKKLLTILVGRGVT 288 AP II + +P I D D +L L G+ Sbjct: 137 KGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERILDWTAVLECLRNEGLR 196 Query: 289 SLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IPSP---LEEGYL--EKNFM 339 S+++EGG V +S + + LV+S+I+ + +G+GG + SP +E G + Sbjct: 197 SVMIEGGGTVINSLLEPRWAHLVNSVIVTIAPTWLGQGGVVVSPRRRVEGGAVVPAARLR 256 Query: 340 CVRRDYFGSDVCL 352 V+ FG DV L Sbjct: 257 DVKWYPFGEDVVL 269 >gi|124485467|ref|YP_001030083.1| hypothetical protein Mlab_0643 [Methanocorpusculum labreanum Z] gi|124363008|gb|ABN06816.1| bifunctional deaminase-reductase domain protein [Methanocorpusculum labreanum Z] Length = 225 Score = 154 bits (389), Expect = 3e-35, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 100/220 (45%), Gaps = 14/220 (6%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLAD 203 ++ H+ + ++ D + + S I ++ +H RA+ DAI+VG T+ D Sbjct: 5 QKPHVLMISEITADGKLTLGKGVSSKILMKHMSHEAEILLHETRAEYDAIMVGSSTIRID 64 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 + LT R+ ++ +P+R+I + L L++ + T V+ V+E AF + Sbjct: 65 NSFLTVRM--VEGENPLRVIPNSLADLPLEANVFDTTKARTVLAVSEKAPKDRIDAFTAR 122 Query: 264 NINIIYC--DCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++++ C D D +L+ IL + L++EGG + ++ LVD I L ++ Sbjct: 123 GVDVVVCGEDRVDFVQLMNILSAKYQIKKLIIEGGPTLNWHMLHHGLVDEIRLIHMPFIV 182 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEYI 355 G PS + L ++ D +G+++ EY Sbjct: 183 GGSDTPSLVGGMPLASENDMIKLDLRSTKMYGTNLVTEYR 222 >gi|260907065|ref|ZP_05915387.1| riboflavin-specific deaminase/GTP cyclohydrolase II [Brevibacterium linens BL2] Length = 473 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 108/216 (50%), Gaps = 14/216 (6%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + ++A S+D I + + ++G I + +H +RA A+LVG GTV+ADDP LT R Sbjct: 245 VVAQLAQSEDGFIATSDGDAQFVSGQIDRAHLHRIRASVGAVLVGCGTVIADDPRLTVR- 303 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271 + +P+R++LDPH ++ + ++ + + ++ P + + + + Sbjct: 304 -AVPGENPVRVVLDPHGRVPTTATVLTSPESPTLWLIGAEVAPSSDVGDHVSVVRLPAAE 362 Query: 272 CRD--LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326 D ++++++ S+LVEGG SF+ + ++D + L + + IG G+P Sbjct: 363 GDDIPPARIVSLIREYVAGSILVEGGGRTVSSFLAAGVLDRLFLTSAPVFIG-NGVPGIR 421 Query: 327 ---SPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 +P+ L + F RR FG D+C EY+ L Sbjct: 422 FEGTPVMAEALRRPF---RRYQFGEDMCTEYLLSEL 454 >gi|330930301|ref|XP_003302977.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1] gi|311321324|gb|EFQ88912.1| hypothetical protein PTT_14981 [Pyrenophora teres f. teres 0-1] Length = 280 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 29/241 (12%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y + + +TL A S D+ + +A ++G SK H LR++ DAIL+G GT Sbjct: 31 YARPEHIAKPFVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRHDAILIGAGTA 90 Query: 201 LADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLD--SKIIKTALL----APVII 247 AD+P L CR+ G+ + P +++DPH + + SK+++ A AP I+ Sbjct: 91 TADNPSLNCRIEGVGGYGSEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIV 150 Query: 248 VTENDDPVLALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVTSLLVEGGAAV 298 + + +L L +G+ S+++EGG V Sbjct: 151 TCTSPSADRRAILENVGGKFLLLGLSAKDVSQAGSSWHIILDALRQQGIQSVMIEGGGFV 210 Query: 299 AHSFINSR----LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNFMCVRRDYFGSDVC 351 + + LVDS+I+ + +G+GG+ P E VR G DV Sbjct: 211 INDLLGPGPAYSLVDSVIVTIAPTWLGKGGVQVCPDGGSERLPVTRLQNVRWVPLGEDVV 270 Query: 352 L 352 L Sbjct: 271 L 271 >gi|240281297|gb|EER44800.1| riboflavin-specific deaminase [Ajellomyces capsulatus H143] Length = 611 Score = 153 bits (387), Expect = 4e-35, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT + D+P Sbjct: 317 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGTAMVDNP 376 Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL + P II+DP + + +++KTA AP ++V+ Sbjct: 377 GLNCRLTGSGGFGGLGKMWQPRPIIVDPIGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 436 Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P LA + + + + + +L L G+TS+++EGGA V +N Sbjct: 437 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 496 Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG+ + N ++ G DV + Sbjct: 497 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 554 >gi|308803240|ref|XP_003078933.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS) [Ostreococcus tauri] gi|116057386|emb|CAL51813.1| COG1985: Pyrimidine reductase, riboflavin biosynthesis (ISS) [Ostreococcus tauri] Length = 207 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 63/138 (45%), Positives = 83/138 (60%), Gaps = 3/138 (2%) Query: 5 SFDARFMSAALRFSR-WHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALE 61 + D +M AL + NP V C++V + +V+GRG G PHAEV AL Sbjct: 56 ARDEEYMRQALEAAASRTAEEVHPNPLVGCVVVDPRADVVVGRGFHPRAGEPHAEVFALR 115 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AGE ARGATAYVTLEPC+H+GR+PPCA+ +++ G++RVVV DPD RVSG G+Q L Sbjct: 116 AAGELARGATAYVTLEPCNHFGRTPPCARALVDAGVKRVVVGFVDPDPRVSGGGIQTLLD 175 Query: 122 KGIIVDRMMESEGKIFLH 139 GI V E ++ Sbjct: 176 AGIDVAVGCEEARCREIN 193 >gi|255322011|ref|ZP_05363161.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277] gi|255301115|gb|EET80382.1| riboflavin biosynthesis protein RibD [Campylobacter showae RM3277] Length = 371 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 70/327 (21%), Positives = 121/327 (37%), Gaps = 57/327 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA------ 59 D +MS A++ + LT NP+V C+I+ G ++ G HAE A Sbjct: 4 DEFYMSLAIKKAWEFQILTYPNPAVGCVILDSSGRLLSVAAHKKAGFLHAEPSAILLALC 63 Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77 L+ G+ +GA AYVTLE Sbjct: 64 QKCEAFLRDFLRDYHAALGVKFENAAELENADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PC+H G++PPCA+ + VV+ D + V+ G L GI + ++ E Sbjct: 124 PCAHRGKTPPCAELLSRLKFAEVVIARGDENT-VASGGANILKSSGISVKFDVLRREADE 182 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + +L Q S L ++ + + + + I+ S+ H LR+ ++ +++G Sbjct: 183 LVEPFLAWQSGNFSFFKLALSANG---VAVGTAQNKIISNLASRTHSHRLRSAAELLVIG 239 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 TV AD P L RL +P +++ + D+ I + + VT + + Sbjct: 240 GATVRADRPRLDTRLIE-HGKNPN-VMIYSRER-EFDASIPLFGVEGRSVRVTSDINEAF 296 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILV 283 A D + +L Sbjct: 297 APRLTMFEGGENALKTLDERAKWLLLY 323 >gi|261188103|ref|XP_002620468.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081] gi|239593343|gb|EEQ75924.1| riboflavin-specific deaminase [Ajellomyces dermatitidis SLH14081] gi|239609085|gb|EEQ86072.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ER-3] gi|327356427|gb|EGE85284.1| riboflavin-specific deaminase [Ajellomyces dermatitidis ATCC 18188] Length = 666 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 60/236 (25%), Positives = 102/236 (43%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + +TL A S D + + ++G +K H LR++ DAIL+G+GT +AD+P L Sbjct: 377 QFPFVTLTYASSMDAKVSLFPGIQTALSGPETKVMTHYLRSRHDAILIGVGTAIADNPGL 436 Query: 208 TCR-------LNGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTENDD- 253 CR + P II+DP + + +++KTA AP +IV+ + Sbjct: 437 NCRLAGAGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKAGKGKAPWVIVSPGANI 496 Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305 P L + + + + + +L L GVTS+++EGGA V +N Sbjct: 497 QPAKVLTLKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGVTSVMIEGGATVISELLNPE 556 Query: 306 --RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G GG+ + N ++ G DV + Sbjct: 557 YVDFVDSLIITLAPTFLGRGGVGVSPDAKKDNTGKPISALNPYDIKWQPLGQDVVM 612 >gi|270684433|ref|ZP_06222817.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae HK1212] gi|270316231|gb|EFA28189.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae HK1212] Length = 94 Score = 153 bits (386), Expect = 6e-35, Method: Composition-based stats. Identities = 49/89 (55%), Positives = 60/89 (67%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + SS D FM AL + T+ NPSV C++VK+G ++G G G PHAE AL Sbjct: 2 LEFSSQDCVFMQRALDLAAKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVAL 61 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCA 89 +AGE A+GATAYVTLEPCSHYGR+PPCA Sbjct: 62 AQAGENAKGATAYVTLEPCSHYGRTPPCA 90 >gi|225555092|gb|EEH03385.1| riboflavin-specific deaminase [Ajellomyces capsulatus G186AR] Length = 684 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 59/238 (24%), Positives = 105/238 (44%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +TL A S D+ + + ++G +K H LR++ DAIL+G+GT + D+P Sbjct: 390 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGTETKLMTHYLRSRHDAILIGVGTAMVDNP 449 Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL + P II+DP + + +++KTA AP ++V+ Sbjct: 450 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 509 Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P LA + + + + + +L L G+TS+++EGGA V +N Sbjct: 510 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 569 Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG+ + N ++ G DV + Sbjct: 570 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 627 >gi|257460844|ref|ZP_05625945.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] gi|257442175|gb|EEV17317.1| riboflavin biosynthesis protein RibD [Campylobacter gracilis RM3268] Length = 407 Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 65/260 (25%), Positives = 98/260 (37%), Gaps = 59/260 (22%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQA------ 59 D +M ALR + + LT NP+V C+++ + G V+G G G HAE A Sbjct: 3 DEFYMDLALRAAWRYQALTLPNPAVGCVLLDRGGRVLGIGAHKKAGFLHAEANAVFAALC 62 Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77 L G RGA AYVTLE Sbjct: 63 DLDVNFAQDFACEYAREFGVKFQNLEALKSALLQPSFAYDFILNRHGGLLRGACAYVTLE 122 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-MMESEGKI 136 PC+H G++P CA+ + + G+ RVV+ D + + +G G + L + I + + + + Sbjct: 123 PCAHRGKTPSCAELLAQLGLSRVVIGARDTNAQAAG-GAEILRRGSIEIKFDVCHAAAEE 181 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + + I + + G I + VH LR+ D + VG Sbjct: 182 LAEPFYLARESGFCFIKINA--------TLNGAAHGRIGSEKQRVFVHELRSVCDYVGVG 233 Query: 197 IGTVLADDPELTCRLNGLQE 216 TV AD P L R E Sbjct: 234 GQTVRADRPTLDVRAAKFDE 253 >gi|302546634|ref|ZP_07298976.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD domain-containing protein [Streptomyces hygroscopicus ATCC 53653] gi|302464252|gb|EFL27345.1| LOW QUALITY PROTEIN: riboflavin biosynthesis, RibD domain-containing protein [Streptomyces himastatinicus ATCC 53653] Length = 272 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 98/251 (39%), Gaps = 12/251 (4%) Query: 109 VRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 GL+ + + E YL + ++ S D I Sbjct: 20 AEARAAGLERGADGAVRWREDATPEADELADRYLPLCLAGPRLTIAQLGQSLDGFIATRT 79 Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF 228 + +TG + +H LRA +DA++VG GT LADDP+LT R P+R+ILDPH Sbjct: 80 GDADYVTGEEDRCHLHRLRALTDAVVVGAGTALADDPQLTVR--ACSGPHPVRVILDPHG 137 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 ++ ++ + +V + + ++L+ L RG+ Sbjct: 138 RVPPHRRVFTDGSAPTLWVVGAETGDGRTAPDGVDVLTLPDRAAFAPQRLVEALAARGLG 197 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP------SPLEEGYLEKNFMCVR 342 +L+EGG F++ + + + + +++G+ GIP +P+ L R Sbjct: 198 RVLIEGGGVTVSRFLHDGALHRLYVTVAPVLLGD-GIPGLRFDGTPVMRDALRPR---TR 253 Query: 343 RDYFGSDVCLE 353 R G D E Sbjct: 254 RARLGEDTLFE 264 >gi|71023879|ref|XP_762169.1| hypothetical protein UM06022.1 [Ustilago maydis 521] gi|46101653|gb|EAK86886.1| hypothetical protein UM06022.1 [Ustilago maydis 521] Length = 253 Score = 152 bits (385), Expect = 7e-35, Method: Composition-based stats. Identities = 59/229 (25%), Positives = 104/229 (45%), Gaps = 20/229 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R H+TL A S D I G + ++G S H LR D I+VGIGTVL D+P+L Sbjct: 26 RRPHVTLTFAQSSDGKIAGPGKTQLALSGPESMRLTHQLRTMHDGIMVGIGTVLNDNPQL 85 Query: 208 TCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLA----PVIIVTENDDPVLALAF 260 RL P ++LD ++ +D K+I+ P+++ ++ P Sbjct: 86 NARLLYAPPPVSRLPRPVVLDSKLRMPVDCKLIRNYAAGIGRQPLVLTLDSAHPDRRTQL 145 Query: 261 RKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS-RLVDSIILY 314 +++I D +L L G+ L+VEGGA V S + + +D++++ Sbjct: 146 ELAGVDVIQVHDSSAALLDWTTILQHLYDAGIRRLMVEGGAGVIDSLMQQSQHIDALLVT 205 Query: 315 RSQIVIGEGG------IPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + + +G G +PS + E + + + R +FG D + + + Sbjct: 206 IAPLTVGSEGFSFTSKLPS-ISEAHPDAEWSLPSRAWFGKDEVIVWHKR 253 >gi|257388460|ref|YP_003178233.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Halomicrobium mukohataei DSM 12286] gi|257170767|gb|ACV48526.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)p yrimidine1-reductase [Halomicrobium mukohataei DSM 12286] Length = 223 Score = 152 bits (385), Expect = 8e-35, Method: Composition-based stats. Identities = 57/221 (25%), Positives = 98/221 (44%), Gaps = 12/221 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208 H+ + A+S D + + I+G ++V LRA+SDA++VG+GTVLADDP LT Sbjct: 1 MHVVVNAAMSADGKLSTRRREQIEISGTRDFDRVDELRAESDAVMVGVGTVLADDPSLTL 60 Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DDPVLALAF 260 R + + +P R++ D + D++++ A L +++ D V + Sbjct: 61 DDPERQRAREDRGEPANPARVVADSQVRTPPDARVLDEAALTYLLVSQAALTDFVTQMED 120 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + D DL L L G G+ L+VEGG + S LVD + ++ VI Sbjct: 121 VGATVIVAGEDRVDLVTALAKLEGDGIDQLMVEGGGELIFSLFEEGLVDELSVFVGSTVI 180 Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYFGSDVCLEYIGKN 358 G P+ + + F + + V L + + Sbjct: 181 GGRDAPTLADGEGFVEEFPALSLDGVERVDDGVLLSWTVTD 221 >gi|119025436|ref|YP_909281.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis ATCC 15703] gi|118765020|dbj|BAF39199.1| riboflavin biosynthesis protein RibD [Bifidobacterium adolescentis ATCC 15703] Length = 317 Score = 152 bits (384), Expect = 8e-35, Method: Composition-based stats. Identities = 72/287 (25%), Positives = 112/287 (39%), Gaps = 51/287 (17%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GEEA 67 M+ AL +R G NP V ++V+DG V+ G PHAE A + A G + Sbjct: 49 MAQALELARKGAGWVDPNPLVGAVVVRDGEVLATGYHDRYRGPHAERMAFDYADAHGIDL 108 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ +V Sbjct: 109 TGATVIDTLEPCCHVGSQPACTALILAHGIARVVVGSVDPNPIVAGKGLRILEEAGVEVV 168 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 +M E + + +I + ++ + + + + L Sbjct: 169 RDVMREECDAINRHFFHYITTGKPYIVDGRRRAGESD-----------SEYAVRRR--EL 215 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI 246 A A+L G + + D+ NG P++ + Sbjct: 216 YATYAAVLAGTESDVPDESF--AHFNG-----PVQAV----------------------- 245 Query: 247 IVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 D V+ R + C D + L+ L R + SL+VE Sbjct: 246 ----GADEVVIGGHRPLLLEAGALACTDPDEWLSELGKRKIDSLIVE 288 >gi|159128508|gb|EDP53623.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus fumigatus A1163] Length = 280 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 101/236 (42%), Gaps = 33/236 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 TL A S D+ + ++ ++G SK H LR++ DAIL+G+GT +ADDP L C Sbjct: 39 PFTTLTFATSLDSALALSPGAKTVLSGPQSKAMTHYLRSRHDAILIGVGTAVADDPGLNC 98 Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTALL----APVIIVTENDDPVL 256 R+ + P I++DP + +SKI+ A AP I+ P Sbjct: 99 RIAGVGGYGGQGLQGQPRPIVIDPSARWDFTENSKILTLAREGRGRAPFILTGTQSIPAE 158 Query: 257 ALA-FRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 A + I D D LL L G+ S+++EGGA + +S + Sbjct: 159 KKALLERHGGKFISLDVVTSETEERRMDWTTLLKALSKEGLKSVMIEGGATIINSLLEPS 218 Query: 305 -SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFMCVRRDYFGSDVCL 352 L+DS+I+ + +G+GG + SP V+ FG DV L Sbjct: 219 YQNLIDSVIVTIAPTWLGQGGVVVSPTRRFNEQGVAIPASRLTDVKWYPFGEDVVL 274 >gi|169781288|ref|XP_001825107.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Aspergillus oryzae RIB40] gi|83773849|dbj|BAE63974.1| unnamed protein product [Aspergillus oryzae] Length = 273 Score = 152 bits (384), Expect = 9e-35, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 33/253 (13%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + + TL A S D+ + +A ++G SK H LR++ DA Sbjct: 17 EPHLPPNNEPELPKSNLPFTTLTFATSLDSSLALAPGTRTTLSGPQSKAMTHYLRSRHDA 76 Query: 193 ILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKLSL--DSKII----KT 239 IL+G+GT +AD+P L CR+ P I++DP + SKI+ + Sbjct: 77 ILIGVGTAVADNPGLNCRIEGVGGYGGEGLLGQPRPIVIDPRARWDFTEQSKILELVKEG 136 Query: 240 ALLAPVIIVTENDDP--VLALAFRKKNINIIYCD---------CRDLKKLLTILVGRGVT 288 AP II + +P I D D +L L G+ Sbjct: 137 KGRAPFIITSTGTEPAAEKKALLESYGGKFIPLDLFLEEHGERRLDWTAVLECLRNEGLR 196 Query: 289 SLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLEEG---YLEKNFM 339 S+++EGG V +S + + LV+S+I+ + +G+GG+ P EG Sbjct: 197 SVMIEGGGTVINSLLEPGWAHLVNSVIVTIAPTWLGQGGVVVSPRRRVEGDAVVPAARLR 256 Query: 340 CVRRDYFGSDVCL 352 V+ FG DV L Sbjct: 257 DVKWYPFGEDVVL 269 >gi|154148617|ref|YP_001405744.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC BAA-381] gi|153804626|gb|ABS51633.1| riboflavin biosynthesis protein RibD [Campylobacter hominis ATCC BAA-381] Length = 362 Score = 152 bits (384), Expect = 1e-34, Method: Composition-based stats. Identities = 60/282 (21%), Positives = 107/282 (37%), Gaps = 57/282 (20%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQA----- 59 D +M+ AL+ + + LT NP+V +++ + G ++ G HAEV A Sbjct: 2 QDEFYMNLALQKAWKNQLLTYPNPAVGAVVLDNAGKILSIEAHEKAGFAHAEVLAVFRAL 61 Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77 ++ ++ +G +VTLE Sbjct: 62 ENSDRNFTLKFLNSYNKNFNSNFKDTKNLATEFNANFIYDFIIKNHADKLKGGKIFVTLE 121 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PCSH G++PPCA I + V+ D + +++ G L++ G+ + + ++E +I Sbjct: 122 PCSHLGKTPPCANLISALKFKDCVIGAKDEN-KIASGGAYILNKNGVNVKLGVCKNEAEI 180 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + + Q + + G+A G I+ S+ H LRA SD +++G Sbjct: 181 LISPFKKWQKNGKFVFFKLALSA----NGVACGGI--ISNEKSRIFSHKLRAISDLLIIG 234 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK 238 TV D P+L RL +P I + Sbjct: 235 GNTVRTDRPKLDTRLISST-KNPNIFIFSHLQNFDKTIPLFS 275 >gi|70607877|ref|YP_256747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus acidocaldarius DSM 639] gi|68568525|gb|AAY81454.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus acidocaldarius DSM 639] Length = 214 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 52/216 (24%), Positives = 97/216 (44%), Gaps = 12/216 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 ++ R + + +S D + ++ I K + H LRA+ DAI+VG TV D+P Sbjct: 1 MKSRPYTIIFSTISIDGRLATKTG-YSELSCPIDKQRQHQLRAEVDAIMVGGNTVRIDNP 59 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT + ++ P+R+I+ L + SKI L ++ T++++ K+ + Sbjct: 60 SLTVKYAKKKDKDPIRVIVSKSLNLDVSSKIFSIPPL--TVVYTKSENRSKQYELEKRGV 117 Query: 266 NIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + +L + + L V L++EGG + S I+ +L D I + S + G G Sbjct: 118 VVRRFN--ELSDVFSDLYESFNVRRLMIEGGGNLIWSVIHEKLYDEIRVTVSPRIFG-NG 174 Query: 325 IPSPLEEGYL---EKNFMCV--RRDYFGSDVCLEYI 355 + EG+ V + G+++ L YI Sbjct: 175 VSLAQGEGFQGDESPRLRLVDAKICQCGNEIHLVYI 210 >gi|119486680|ref|XP_001262326.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181] gi|119410483|gb|EAW20429.1| riboflavin-specific deaminase [Neosartorya fischeri NRRL 181] Length = 627 Score = 151 bits (383), Expect = 1e-34, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 106/234 (45%), Gaps = 31/234 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C Sbjct: 383 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 442 Query: 210 RLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DP 254 RL + P +++DP + + ++++TA AP +IV+ P Sbjct: 443 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 502 Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305 + + + + + + +L L G+ S+++EGG V +N + Sbjct: 503 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 562 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 + +DSII+ + +G GG+ + E+ N ++ G +V + Sbjct: 563 QFIDSIIVTVAPTYLGRGGVGVSPDSKRDEQGKPNAALNPREIKWVPLGQNVIM 616 >gi|296114200|ref|ZP_06832855.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii ATCC 23769] gi|295979276|gb|EFG85999.1| riboflavin biosynthesis protein RibD [Gluconacetobacter hansenii ATCC 23769] Length = 357 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 77/315 (24%), Positives = 113/315 (35%), Gaps = 35/315 (11%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEAGEE 66 R AA+ + HVG T+ NP V C I+ G ++ G G PHAE +A+ E Sbjct: 20 ERAFRAAVADAVRHVGATAPNPPVGCAILDAAGTILCTGAHHRAGTPHAEARAIALCRER 79 Query: 67 A---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 R T VTLEPC+H GR+ PC+Q I+ IR V + DP+ V+G G +L G Sbjct: 80 GLIERAHTIVVTLEPCNHTGRTGPCSQAIMHTPIRTVWIGATDPNPNVAGGGADFLRDHG 139 Query: 124 II---------VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 D + L G Sbjct: 140 CDVRLLSDMGTYDAAELARLCRGLITPFAHLARTGRAWVTVKQAVDATGSMRPPAGRTTF 199 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 T + + H LR +DA++ GT+ AD P L R + D + S Sbjct: 200 TSATALDLAHRLRRATDAVVTATGTITADRPGLDVRR-----------VPDHPGR---AS 245 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 +++ +I T A + + C D++ L +L G LVE Sbjct: 246 RLL--------VICTTRGQVDEQYATQARARGFDVRTCTDIRHLPDLLGRAGAMWALVEA 297 Query: 295 GAAVAHSFINSRLVD 309 G + + D Sbjct: 298 GPGLLSAIREHATWD 312 >gi|28900546|ref|NP_800201.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|260365428|ref|ZP_05777965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] gi|260877493|ref|ZP_05889848.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|260894835|ref|ZP_05903331.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|28808926|dbj|BAC62034.1| putative riboflavin deaminase [Vibrio parahaemolyticus RIMD 2210633] gi|308085328|gb|EFO35023.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus Peru-466] gi|308090602|gb|EFO40297.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AN-5034] gi|308114425|gb|EFO51965.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus K5030] Length = 141 Score = 151 bits (382), Expect = 2e-34, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 73/126 (57%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122 Query: 128 RMMESE 133 + SE Sbjct: 123 IGLCSE 128 >gi|297155044|gb|ADI04756.1| bifunctional deaminase-reductase-like protein [Streptomyces bingchenggensis BCW-1] Length = 361 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 106/250 (42%), Gaps = 20/250 (8%) Query: 121 QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISK 180 G+ + + E +I YL + ++ S D I + +TG + Sbjct: 31 DGGLRWRQEVSPEVRILTDRYLPLCLAGPRLAVAQLGQSLDGFIATRTGDADYVTGEEDR 90 Query: 181 NQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTA 240 +H LRA DA++VG GT +ADDP+LT R +P+R++LDPH ++ ++ Sbjct: 91 AHLHHLRALVDAVVVGAGTAVADDPQLTVR--ACTGTNPVRVVLDPHGRVPSQRRVFIDG 148 Query: 241 LLAPVIIVTEND-----------DPVLALAFRKKNINIIYCDCR---DLKKLLTILVGRG 286 + +V + D +++++ R + + LL L RG Sbjct: 149 SAPTLWVVAADSGRGGENGSVGVDGSGRHRGLGAHVDVLTLPDRAAFEPRSLLDALARRG 208 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRR 343 + +L+EGG F++ R +D + + + +++G+ G+P G +RR Sbjct: 209 LGRVLIEGGGVTVSRFLHQRALDRLYVTVAPVLLGD-GVPGLRFAGTSVMRDALRPPMRR 267 Query: 344 DYFGSDVCLE 353 + G D E Sbjct: 268 AHLGEDTLFE 277 >gi|121714261|ref|XP_001274741.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1] gi|119402895|gb|EAW13315.1| riboflavin-specific deaminase [Aspergillus clavatus NRRL 1] Length = 629 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 104/236 (44%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 H+TL A S D+ I + ++G +K H LR++ DAIL+G+GT LAD+P L Sbjct: 380 HLPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTALADNPGL 439 Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252 CRL + P +++DP + + ++++TA AP +IV+ Sbjct: 440 NCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQI 499 Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 P + + + + + + +L L G+ S+++EGG V +N Sbjct: 500 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPE 559 Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 + +DS+I+ + +G GG+ + E+ N V+ G +V + Sbjct: 560 YAEFIDSMIVTVAPTYLGRGGVGVSPDSKRDEEGKPNAALNPRDVKWMPLGQNVIM 615 >gi|303320915|ref|XP_003070452.1| RibD C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240110148|gb|EER28307.1| RibD C-terminal domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320033048|gb|EFW14997.1| riboflavin-specific deaminase [Coccidioides posadasii str. Silveira] Length = 611 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 K H+TL A S D I +A ++G SK H LR++ DAIL+G+GT LAD+P Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407 Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVT--E 250 L CRL + P +I+DP + + +I+KTAL AP ++V+ Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467 Query: 251 NDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 N L +K + + + + L G+ S++VEGG V +N Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527 Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSDVCL 352 VDS+I+ + +G GG+ + E V + G DV + Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585 >gi|70982261|ref|XP_746659.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293] gi|66844282|gb|EAL84621.1| riboflavin-specific deaminase [Aspergillus fumigatus Af293] gi|159122105|gb|EDP47227.1| riboflavin-specific deaminase [Aspergillus fumigatus A1163] Length = 622 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 105/234 (44%), Gaps = 31/234 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C Sbjct: 378 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 437 Query: 210 RLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DP 254 RL + P +++DP + + ++++TA AP +IV+ P Sbjct: 438 RLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVIVSPGAQIHP 497 Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305 + + + + + + +L L G+ S+++EGG V +N + Sbjct: 498 QKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGIKSVMIEGGGTVLSELLNPEYT 557 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 +DSII+ + +G GG+ E E+ N ++ G +V + Sbjct: 558 EFIDSIIVTVAPTYLGRGGVGVSPESKRDEQGKPNAALNPREIKWVPLGQNVIM 611 >gi|262277170|ref|ZP_06054963.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114] gi|262224273|gb|EEY74732.1| hypothetical protein HIMB114_0582 [alpha proteobacterium HIMB114] Length = 357 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 80/297 (26%), Positives = 128/297 (43%), Gaps = 8/297 (2%) Query: 16 RFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVT 75 + S + T NP V + I VT G PHAE AL + ++ Y + Sbjct: 19 KLSEINQFETFPNPCVGAAGIDKNNHIHLAVTGKNGSPHAEF-ALLKNKKKNFINELYTS 77 Query: 76 LEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGK 135 LEPC H G++P C+ II+ ++++ D D RV G+ + L +K I + + Sbjct: 78 LEPCCHIGKNPSCSNLIIKKKVKKIFSSSIDLDERVKGKTNRLLKKKNISLKYTKQPSKP 137 Query: 136 IFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILV 195 LH Y ++ ++ KIA S D T + HLLR QSD+IL+ Sbjct: 138 SILHNYCN--SNQKPYVVAKIASSSDFYSKHKFKRLFTSTS--ALKFAHLLRYQSDSILI 193 Query: 196 GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 G T+ D+P L CRLNG+++ + II + L + K+ L + + Sbjct: 194 GKNTINHDNPSLNCRLNGIEKKIAIFII---NKNLFFNKKVFLNNNLKGSYVFHSEKNKT 250 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 K I + + + LL I+ G LL+EGGA F+ + ++ + Sbjct: 251 KIKKVGKFFKLIYFDLNQPINDLLKIVYQLGYKKLLIEGGANTLRYFLKGKCINELY 307 >gi|83775268|dbj|BAE65390.1| unnamed protein product [Aspergillus oryzae] Length = 286 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L Sbjct: 29 QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 88 Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252 CRL + P +I+DP + + ++++TA AP ++V+ Sbjct: 89 NCRLEGAGGFGGLGRMWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 148 Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 P + + + + + + +L L GV S+++EGG V +N Sbjct: 149 HPQKLMMLKGYGGDFLRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPE 208 Query: 305 -SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 + +DSII+ + +G GG+P + E+ N V+ G +V + Sbjct: 209 YTEFIDSIIVTVAPTYLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 264 >gi|312220526|emb|CBY00467.1| similar to 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leptosphaeria maculans] Length = 273 Score = 151 bits (381), Expect = 2e-34, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 102/259 (39%), Gaps = 43/259 (16%) Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 SE + +TL A S D+ + +A ++G SK H LR++ Sbjct: 13 NSEQIDPYITQPNHSSHSKPFVTLTFATSLDSQLSLAPGVQTALSGPDSKAMTHYLRSKH 72 Query: 191 DAILVGIGTVLADDPELTCRL-------NGLQEHSPMRIILDPHFKL--SLDSKIIKTAL 241 DAIL+G+GT +ADDP L CR+ E P +I+DP + + +SK+++ A Sbjct: 73 DAILIGVGTAIADDPSLNCRIGGVGGYGGEGLEGQPRPVIIDPKCRWEFTEESKVMRLAR 132 Query: 242 L----APVIIVTENDDPVLALAFRKKNINII---------YCDCRDLKKLLTILVGRGVT 288 AP +I ++ + LL L + Sbjct: 133 ERKGKAPWVITQTEMSEGKRRILESVGGKVLAVCSVPALPVTASSEWDDLLKALAREEIR 192 Query: 289 SLLVEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGI------------PSPLEEGY 333 S+++EGG + + + + LVDS+I+ + +GEGG+ P P+ Sbjct: 193 SVMIEGGGRIINDLLGAKNFNLVDSVIVTIAPTWLGEGGVQVCPERRMENGRPLPVG--- 249 Query: 334 LEKNFMCVRRDYFGSDVCL 352 VR G DV L Sbjct: 250 ---RLTDVRWIPLGEDVVL 265 >gi|302348951|ref|YP_003816589.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15] gi|302329363|gb|ADL19558.1| Pyrimidine nucleotide reductase [Acidilobus saccharovorans 345-15] Length = 215 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 49/177 (27%), Positives = 79/177 (44%), Gaps = 7/177 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + +S D I ++ H LRA SDA+LVG T + D+P LT Sbjct: 3 PYTIIFSTMSVDGRIATEEG-FSRLSCDEDFKIQHELRAWSDAVLVGANTAIKDNPSLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 R +P+R+++D K+ + VII TE+ + ++++ I II Sbjct: 62 R--KAVGKNPLRVVVDASLKVPPTLDMFSIPGKG-VIITTEDHNGEELAKYKERGIVIIR 118 Query: 270 C---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 DL+ + L GV L++EGG ++ F+ LVD + + S IV G G Sbjct: 119 AGVGPEVDLRTAVRALFEMGVRRLMIEGGGTTSYRFLKEGLVDELWITLSPIVFGSG 175 >gi|322380244|ref|ZP_08054465.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5] gi|321147322|gb|EFX42001.1| riboflavin-specific deaminase/reductase [Helicobacter suis HS5] Length = 353 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 151/386 (39%), Gaps = 78/386 (20%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 +P+ M A ++ + L NPSVAC+I+ ++ + PHAEV+A Sbjct: 6 LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65 Query: 60 LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90 L++A + + T VTLEPC+H+G++PPCA Sbjct: 66 LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149 + + ++V++ + + G GL L + GI ++ ++E EG+ L+ + + + Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGV 184 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + G I+ +S+ H R+ ++ +++ +V +D P L Sbjct: 185 FNLFKIALR-------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLDS 237 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL+ + P IL T DP + L +K I Sbjct: 238 RLSAYTKRPPNVAILTRD---------------------TTPFDPTIPLFQVEKRQVQIC 276 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP 328 +L + +G ++EGG + S + VD ++++++ + G P Sbjct: 277 HQVEELP------LQQGFN--IIEGGWDLFVSL--QKHVDMLLIHQNSTLAGSLKSTKMP 326 Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEY 354 L K+F G D LE+ Sbjct: 327 L------KSFTFCHSQLLGPD-LLEW 345 >gi|313126634|ref|YP_004036904.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3h)-one reductase [Halogeometricum borinquense DSM 11551] gi|312292999|gb|ADQ67459.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Halogeometricum borinquense DSM 11551] Length = 220 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 94/218 (43%), Gaps = 14/218 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A S D + + I+G +V +RA SDA+LVG+GTVLADDP LT Sbjct: 1 MHVVVNAATSADGKLSTRRREQIKISGADDFARVDRVRADSDAVLVGVGTVLADDPHLTV 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R + +E P R++ D + D++I+ A ++V+E+ A Sbjct: 61 DDADYRDERQSDGREPHPARVVADSRARTPTDARILDDA-ATTYVLVSESAPADRVSALE 119 Query: 262 KKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 K ++ + L RG+ L+VEGG V S LVD + +Y +V Sbjct: 120 KTGGTVVTAGDTRVSFPEAFAELEARGIDRLMVEGGGEVIFSLFEDELVDELSVYVGSVV 179 Query: 320 IGEGGIPSPLEEGYLEKNFMCV---RRDYFGSDVCLEY 354 +G P+ + ++F + + V L Y Sbjct: 180 LGGRDAPTLADGDGFVESFPTLDLRDVERIDDGVLLTY 217 >gi|119179569|ref|XP_001241355.1| hypothetical protein CIMG_08518 [Coccidioides immitis RS] Length = 612 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 102/238 (42%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 K H+TL A S D I +A ++G SK H LR++ DAIL+G+GT LAD+P Sbjct: 348 NRKFPHVTLTYAQSMDGKISLAPGVQTVLSGPESKLMTHYLRSRHDAILIGVGTALADNP 407 Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVT--E 250 L CRL + P +I+DP + + +I+KTAL AP ++V+ Sbjct: 408 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWPINPECRILKTALAGKGKAPWVVVSPCA 467 Query: 251 NDDPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 N L +K + + + + L G+ S++VEGG V +N Sbjct: 468 NISADRILLLKKHGGDFLRISEFNPSWRLQWSTIFGALAAEGINSIMVEGGGVVLSELLN 527 Query: 305 ---SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV-------RRDYFGSDVCL 352 VDS+I+ + +G GG+ + E V + G DV + Sbjct: 528 PEYEDFVDSVIVTVAPTYLGRGGVGVAPDSKRDEYGKPKVSLKPKEPKWHALGQDVIM 585 >gi|91225503|ref|ZP_01260625.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01] gi|269968858|ref|ZP_06182841.1| putative riboflavin deaminase [Vibrio alginolyticus 40B] gi|91189866|gb|EAS76139.1| putative riboflavin deaminase [Vibrio alginolyticus 12G01] gi|269826538|gb|EEZ80889.1| putative riboflavin deaminase [Vibrio alginolyticus 40B] Length = 141 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 72/126 (57%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGISKVVVAILDPDPRNSGRGIEILKQAGIEVE 122 Query: 128 RMMESE 133 + E Sbjct: 123 TGLCGE 128 >gi|328470490|gb|EGF41401.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio parahaemolyticus 10329] Length = 141 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 72/126 (57%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122 Query: 128 RMMESE 133 + E Sbjct: 123 IGLCGE 128 >gi|330447671|ref|ZP_08311319.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491862|dbj|GAA05816.1| cytidine and deoxycytidylate deaminase zinc-binding region family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 146 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 61/146 (41%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + FM AL S + NP V C++VKDG ++ G T G HAE AL Sbjct: 1 MSGDHQEQAFMMRALLLSHQALPACRPNPPVGCVLVKDGQIVSEGFTQRPGHHHAEAMAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 GE TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L Sbjct: 61 ANYGESLDDVTAYVTLEPCSFVGRTPSCAHTLVERGIKKVVVATLDPDTRNSGKGIAVLE 120 Query: 121 QKGI-IVDRMMESEGKIFLHAYLTRQ 145 Q G+ + + E+E F+ YL R Sbjct: 121 QAGVEVEVGLCENEVLDFIEPYLIRN 146 >gi|322378922|ref|ZP_08053338.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis HS1] gi|321148664|gb|EFX43148.1| Riboflavin-specific deaminase / reductase (RibD) [Helicobacter suis HS1] Length = 353 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 80/386 (20%), Positives = 151/386 (39%), Gaps = 78/386 (20%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA 59 +P+ M A ++ + L NPSVAC+I+ ++ + PHAEV+A Sbjct: 6 LPLLMLTEILMRACIQHAYKSQTLALPNPSVACMILDQHHNILALQDHSQANTPHAEVRA 65 Query: 60 LEEAGEEA-----------------------------RGATAYVTLEPCSHYGRSPPCAQ 90 L++A + + T VTLEPC+H+G++PPCA Sbjct: 66 LKDAYNKLSPTPFPKEINSKDREQTYQFLSKHHNNLFKDCTLLVTLEPCNHFGKTPPCAA 125 Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKR 149 + + ++V++ + + G GL L + GI ++ ++E EG+ L+ + + + Sbjct: 126 LLAQIKPKKVIISCLETHKKAMG-GLACLKEAGIEVITGVLEKEGRALLYPFKCLEQKGV 184 Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + G I+ +S+ H R+ ++ +++ +V +D P L Sbjct: 185 FNLFKIALR-------LNGSFEGKISEELSQIFTHTQRSIANYLIISGQSVRSDRPTLDS 237 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL+ + P IL T DP + L +K I Sbjct: 238 RLSAYTKRPPNVAILTRD---------------------TTPFDPTVPLFQVEKRQVQIC 276 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE-GGIPSP 328 +L + +G ++EGG + S + VD ++++++ + G P Sbjct: 277 HQVEELP------LQQGFN--IIEGGWDLFVSL--QKHVDMLLIHQNSTLAGSLKSTKMP 326 Query: 329 LEEGYLEKNFMCVRRDYFGSDVCLEY 354 L K+F G D LE+ Sbjct: 327 L------KSFTFCHSQLLGPD-LLEW 345 >gi|154486847|ref|ZP_02028254.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis L2-32] gi|154084710|gb|EDN83755.1| hypothetical protein BIFADO_00679 [Bifidobacterium adolescentis L2-32] Length = 269 Score = 150 bits (379), Expect = 3e-34, Method: Composition-based stats. Identities = 70/290 (24%), Positives = 110/290 (37%), Gaps = 51/290 (17%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 +M+ AL +R G NP V ++V G V+ G PHAE A + A G Sbjct: 12 REYMAQALELARKGAGWVDPNPLVGAVVVSGGEVLATGYHDRYRGPHAERMAFDYADAHG 71 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ Sbjct: 72 IDLTGATVIDTLEPCCHVGSQPACTDLILAHGIARVVVGSVDPNPIVAGKGLRILEEAGV 131 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 +V +M E + + +I + ++ + + + + Sbjct: 132 EVVRDVMREECDAINRHFFHYITTGKPYIVDGRRRAGESD-----------SEYAVRRR- 179 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 L A A+L G + + D+ NG P++ + Sbjct: 180 -ELYATYAAVLAGTESDVPDESF--AHFNG-----PVQAV-------------------- 211 Query: 244 PVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 D V+ R + C D + L+ L R + L+VE Sbjct: 212 -------GADEVVIGGHRPLLLEAGALACTDPDEWLSELGKRKIDGLIVE 254 >gi|307111161|gb|EFN59396.1| hypothetical protein CHLNCDRAFT_137887 [Chlorella variabilis] Length = 181 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 83/148 (56%), Gaps = 2/148 (1%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALE 61 V+ D M AL + +G T NP+V C+IV G V+G G G PHAEV AL Sbjct: 27 VTEADRLHMRRALELAARGLGATYPNPAVGCVIVDASGRVLGEGFHPRAGMPHAEVYALR 86 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GATAYVTLEPC+H+GR+PPC++ ++ G+ RVVV DP+ V G G++ L Sbjct: 87 AAGRAAAGATAYVTLEPCNHFGRTPPCSRALVAAGVSRVVVGCTDPNPLVGGCGVKTLRD 146 Query: 122 KGIIVDRMMESE-GKIFLHAYLTRQVEK 148 GI+ E + ++ R E+ Sbjct: 147 AGIVAAVGCEQQACYQLNEEFMVRMQEQ 174 >gi|153836433|ref|ZP_01989100.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio parahaemolyticus AQ3810] gi|260901767|ref|ZP_05910162.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] gi|149750335|gb|EDM61080.1| diaminohydroxyphosphoribosylamino-pyrimidine deaminase [Vibrio parahaemolyticus AQ3810] gi|308108841|gb|EFO46381.1| riboflavin biosynthesis protein RibD [Vibrio parahaemolyticus AQ4037] Length = 141 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 1/135 (0%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 3 QEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI + Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122 Query: 127 DRMMESEGKIFLHAY 141 + E FL Y Sbjct: 123 IGLCGKEVSEFLTPY 137 >gi|269961115|ref|ZP_06175483.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269834066|gb|EEZ88157.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 159 Score = 150 bits (378), Expect = 4e-34, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 77/126 (61%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 21 QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V+ Sbjct: 81 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVE 140 Query: 128 RMMESE 133 + E Sbjct: 141 IGLCGE 146 >gi|254229831|ref|ZP_04923237.1| Pyrimidine deaminase [Vibrio sp. Ex25] gi|262395603|ref|YP_003287456.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp. Ex25] gi|151937667|gb|EDN56519.1| Pyrimidine deaminase [Vibrio sp. Ex25] gi|262339197|gb|ACY52991.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio sp. Ex25] Length = 141 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 72/126 (57%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL S+ + NP V C++VKD ++ G T G HAEV+AL Sbjct: 3 HEFMRRALEVSKNALPECQPNPPVGCVLVKDNQIVSEGHTQAIGGNHAEVEALNAYQGSL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA +++ GI +VVV + DPD R SGRG++ L Q GI V+ Sbjct: 63 ESVTAYVTLEPCSFVGRTPACAVTLVKSGIGKVVVAMLDPDPRNSGRGIEILKQAGIEVE 122 Query: 128 RMMESE 133 + E Sbjct: 123 IGLCGE 128 >gi|121712499|ref|XP_001273861.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus clavatus NRRL 1] gi|119402013|gb|EAW12435.1| riboflavin biosynthesis protein Rib7, putative [Aspergillus clavatus NRRL 1] Length = 279 Score = 150 bits (378), Expect = 5e-34, Method: Composition-based stats. Identities = 66/253 (26%), Positives = 103/253 (40%), Gaps = 33/253 (13%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + + TL A S D+ + ++ ++G SK H LR++ DA Sbjct: 21 EPHLPPQNATFSTTKTLPFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHFLRSRHDA 80 Query: 193 ILVGIGTVLADDPELTCRLNGLQEH-------SPMRIILDPHFKLSLD--SKIIK----T 239 IL+G+GT +ADDP L CR+ G+ + P II+DP + SKI+ Sbjct: 81 ILIGVGTAVADDPGLNCRIQGVGGYGADGLQGQPRPIIIDPSCRWDFTESSKILSLVREG 140 Query: 240 ALLAPVIIVTENDDP-VLALAFRKKNINIIYCDC---------RDLKKLLTILVGRGVTS 289 P II P + I D D +L L G+ S Sbjct: 141 RGRGPFIITGVQSPPSERKALLERHGGKFITLDAMTTAAGEHRMDWSVVLECLKTEGLGS 200 Query: 290 LLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGG-IPSPL------EEGYLEKNFM 339 ++VEGG + +S ++ L+DS+I+ + +G+GG + SP E Sbjct: 201 VMVEGGGTIINSLLDPSSQHLIDSVIVTIAPTWLGQGGVVVSPKRRFDARGEAIPASRLT 260 Query: 340 CVRRDYFGSDVCL 352 V+ FG DV + Sbjct: 261 EVKWYPFGEDVVM 273 >gi|220920297|ref|YP_002495598.1| bifunctional deaminase-reductase domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219944903|gb|ACL55295.1| bifunctional deaminase-reductase domain protein [Methylobacterium nodulans ORS 2060] Length = 255 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 6/177 (3%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + + ++ S D I S I + + +H LRA DAI+VGIGTVLADDP Sbjct: 43 CDQPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPR 102 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT R + SP RI++DP ++ ++ ++ + +++ P + + + Sbjct: 103 LTVRR--VAGRSPARIVIDPAGRIPAQAQCLREDGVRRIVVCR----PDTRIPACAEALR 156 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I + + L++ L G +L+EGGA FI++ +D + L + +++G G Sbjct: 157 IEAPEAFPPQALVSALGRLGFRRILIEGGARTISGFIDAGAIDRLHLMVAPLLLGSG 213 >gi|126732575|ref|ZP_01748373.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] gi|126707021|gb|EBA06089.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] Length = 198 Score = 149 bits (377), Expect = 5e-34, Method: Composition-based stats. Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 10/194 (5%) Query: 172 VPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLS 231 ITG +++ VH LRA DA+LVG GT AD+P LT R + P+RI+ H L Sbjct: 2 QWITGPEARHAVHALRATHDAVLVGGGTARADNPRLTVRGYD-RSRPPVRIVASRHLDLP 60 Query: 232 LDSKIIKTALLAPVIIVTENDDP-VLALAFRKKNINIIYCD----CRDLKKLLTILVGRG 286 L S + +TA PV + D L A+ ++ D LL +L G Sbjct: 61 LLSDLARTAKDVPVWLCHGADARGDLVTAWEGIGARLMTVPLAGGRLDAAALLKVLGQEG 120 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS----PLEEGYLEKNFMCVR 342 +T + EGG +A S + LVD + + + + +G G P ++ F V Sbjct: 121 LTRVFCEGGGQLAASLLAQDLVDELHVLTAGLALGAEGHPGIGALGVDRLGEAPRFTLVD 180 Query: 343 RDYFGSDVCLEYIG 356 G D+ + Sbjct: 181 VCRRGMDIQHVWRR 194 >gi|154273018|ref|XP_001537361.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] gi|150415873|gb|EDN11217.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1] Length = 531 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 104/238 (43%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +TL A S D+ + + ++G +K H LR++ DAIL+G+G + D+P Sbjct: 237 NRQFPFVTLTYASSMDSKVSLFPGVQTALSGPETKLMTHYLRSRHDAILIGVGAAMVDNP 296 Query: 206 ELTCRL-------NGLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL + P II+DP + + +++KTA AP ++V+ Sbjct: 297 GLNCRLTGSGGFGGLGKMWQPRPIIVDPTGRWPADPECRLLKTAKEGKGKAPWVVVSPGA 356 Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P LA + + + + + +L L G+TS+++EGGA V +N Sbjct: 357 NIQPAKVLALKNHGGDYLRIVEYNQSWRLRWEAILRALGTEGITSVMIEGGATVISELLN 416 Query: 305 S---RLVDSIILYRSQIVIGEGGI-------PSPLEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG+ + N ++ G DV + Sbjct: 417 PEYVDFVDSLIITVAPTFLGQGGVGVSPDAKKDNTGKPISALNPRDIKWQPLGQDVVM 474 >gi|237752793|ref|ZP_04583273.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis ATCC BAA-430] gi|229376282|gb|EEO26373.1| riboflavin biosynthesis protein RibD [Helicobacter winghamensis ATCC BAA-430] Length = 348 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 74/383 (19%), Positives = 130/383 (33%), Gaps = 70/383 (18%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 A ++ L+ + T NP+VA L++ +G ++ G PHAEV AL++A Sbjct: 4 AFYLDLCLQCAWKEQLKTLPNPAVAALVLDENGAIVSLESHKECGKPHAEVLALQKAYAA 63 Query: 67 ARGATA---------------------------YVTLEPCSH--YGRSPPCAQFIIECGI 97 G A YVTLEPCS G++P CA + Sbjct: 64 LSGDNAILSLKESQAIHSYLLKNAIPIFKDTMLYVTLEPCSSNKKGKTPSCATLLKTLKP 123 Query: 98 RRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIA 157 + V++ D D + + G Q L + GI V + E E +H + + + Sbjct: 124 KCVIIATQDCD-KSAKGGAQELIEAGICVIKAWEVEALQAIHKQANALLLPFRLLQTQGK 182 Query: 158 VSQDNMIGMAGCGSV--PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ 215 I+ +++ +H R ++D +L+ +V D+P L R L+ Sbjct: 183 FMLFKYASRLDGSIDGGQISTHQAQSLMHDYRTKADVLLISGESVRVDNPRLDTRFATLE 242 Query: 216 EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDL 275 + +P IL + + I L Sbjct: 243 QRNPNVAILTRQKDFPKSAPLF----------------------------EIPNRKVEIL 274 Query: 276 KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE 335 L + G + EGG+ + + +D ++ S + + L Sbjct: 275 HSLEQVKALHGF--IFCEGGSGLFKAL--QNSMDLTLVILSPNFKRDSNLT-----MSLN 325 Query: 336 KNFMCVRRDYFGSDVCLEYIGKN 358 NF + + D+ L I K+ Sbjct: 326 ANFNLLHSEQIADDIFLWLIPKD 348 >gi|34558827|gb|AAQ75171.1| riboflavin biosynthesis protein [Alvinella pompejana epibiont 7G3] Length = 335 Score = 149 bits (377), Expect = 6e-34, Method: Composition-based stats. Identities = 78/340 (22%), Positives = 125/340 (36%), Gaps = 68/340 (20%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D FM A+ + + +T NP+V L+ +G V+ G HAEV L A EE Sbjct: 4 DDIFMRVAIDRAWEYQLITYPNPAVGALVELNGRVLAVEAHREAGTSHAEVLVLLRAYEE 63 Query: 67 -----------------------ARG----ATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 RG + YVTLEPCSH G++P CA + + +R Sbjct: 64 LSNRKIEFNRLDANLAHNFLLSLPRGFFSNCSIYVTLEPCSHTGKTPSCATLLSKLKPKR 123 Query: 100 VVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 VVV DP SG S + ++E E + + ++ Q + KIA + Sbjct: 124 VVVGTLDPISSHSGGVELLKSVGVEVEVGVLEREAEELIEPFIIWQKRAF--VIFKIAQT 181 Query: 160 QDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 + I G ++ S +H +R++ +++G TV D P L CR G Sbjct: 182 SNGRI-----GGGYLSSKESLTHLHKIRSKLSWLIIGGNTVRVDRPTLDCRFIGAN---- 232 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 D I+ + E D + + + I+ D L Sbjct: 233 -----------PPDIAILSKKS------LDEFDKTIPLFNIEDRIVEILSSDIFKKPSL- 274 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +LVEGG + + D ++ Y++ + Sbjct: 275 ----------ILVEGGEGTIGALRDK--FDWLLQYQTPKI 302 >gi|296819637|ref|XP_002849879.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480] gi|238840332|gb|EEQ29994.1| riboflavin-specific deaminase [Arthroderma otae CBS 113480] Length = 630 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 60/238 (25%), Positives = 107/238 (44%), Gaps = 26/238 (10%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP Sbjct: 366 NPRFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDP 425 Query: 206 ELTCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL G P +I+DP + +S+++KTA AP +IV+ Sbjct: 426 GLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWPASPESRLLKTAAEGKGKAPWVIVSPGA 485 Query: 253 D--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + P L ++ + + + + + L +G+ SL++EGG V +N Sbjct: 486 ELHPEKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIQSLMIEGGGVVLSELLN 545 Query: 305 S---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 +DS+I+ + +G GG+ + + + + D+ + +GK++ Sbjct: 546 PEYVDFIDSVIVTVAPTYVGRGGVSASPDSKQDGEGKPINALTPY--DIKWQPLGKDV 601 >gi|67541631|ref|XP_664583.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4] gi|40742435|gb|EAA61625.1| hypothetical protein AN6979.2 [Aspergillus nidulans FGSC A4] gi|259483715|tpe|CBF79332.1| TPA: riboflavin-specific deaminase (AFU_orthologue; AFUA_4G04730) [Aspergillus nidulans FGSC A4] Length = 609 Score = 149 bits (376), Expect = 7e-34, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 31/234 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L C Sbjct: 362 PHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNC 421 Query: 210 RLN-------GLQEHSPMRIILDPHFKLSL--DSKIIKTA----LLAPVIIVTEND--DP 254 RL + P +I+DP + S DS++++TA AP ++V+ P Sbjct: 422 RLQGAGGFGGLGRMWQPRPVIIDPTGRWSPGADSRLLRTAVEGKGRAPWVVVSPGAQIHP 481 Query: 255 VLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---S 305 L + + + + L G+ S+++EGG V +N + Sbjct: 482 SKLLMLKGYGGEFLRIMEYHQNWRLRWESIFRALASEGIKSVMIEGGGRVLSELLNPEYA 541 Query: 306 RLVDSIILYRSQIVIGEGGI---PSPLEEGYLEKNF----MCVRRDYFGSDVCL 352 +DS+++ + +G GG+ P + + N V+ G +V + Sbjct: 542 EFIDSLVVTLAPTYLGSGGVGVSPDSKSDAQGKPNAALNPRDVKWVPLGQNVIM 595 >gi|302529252|ref|ZP_07281594.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4] gi|302438147|gb|EFL09963.1| bifunctional enzyme deaminase/reductase [Streptomyces sp. AA4] Length = 371 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 56/218 (25%), Positives = 90/218 (41%), Gaps = 12/218 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R H+ L A S D + AG + ++ +V LRA++DAILVG GTV AD+P Sbjct: 4 MTGRPHVLLSAAQSLDGYLDDAGSTRLLLSNEDDFAEVDRLRAEADAILVGAGTVRADNP 63 Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R L+ P+++ + KL S+ ++ A Sbjct: 64 RLLVRSAELRRARVAAGRPEQPVKVTVTSSGKLDPASRFFTLGDTEKLVYAPRGS----A 119 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + L+ +L L RG+ +LLVEGG AV F+++ L D + L + Sbjct: 120 DSLSAVATVVEVGSPPRLESVLDDLGARGIRTLLVEGGGAVHTQFLDAGLADELRLAIAP 179 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +++G+ P L G + G L Y Sbjct: 180 VMVGDPRAPRFLGPGAFPRPLELTELRRLGDVAVLRYR 217 Score = 69.9 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 10/127 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLI-VKDGIVIGRGVTAYGGCPH--AEVQAL 60 SS D + A+ + ++ V ++ + DG V+ G + G PH AE AL Sbjct: 223 SSLDLLRLRQAIDLADECPPSST--FRVGAVVGLPDGTVLATG-HSGEGDPHNHAEESAL 279 Query: 61 EE---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + AT Y +LEPCS P C Q I+E I RVV+ +P + V G+ Sbjct: 280 AKLDPHDPRLADATMYSSLEPCSDRASHPKSCTQLILETAIPRVVMAWREPSLFVEAEGV 339 Query: 117 QWLSQKG 123 + L G Sbjct: 340 ERLMAAG 346 >gi|255080300|ref|XP_002503730.1| predicted protein [Micromonas sp. RCC299] gi|226518997|gb|ACO64988.1| predicted protein [Micromonas sp. RCC299] Length = 215 Score = 149 bits (376), Expect = 8e-34, Method: Composition-based stats. Identities = 63/145 (43%), Positives = 84/145 (57%), Gaps = 3/145 (2%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALE 61 + DA M AL + G T NP V C+IV + G+V+G G G PHAEV AL Sbjct: 69 TEADAERMRRALALAATAAGKTFPNPVVGCVIVDERSGVVVGEGYHPKAGEPHAEVFALR 128 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A+G TAYVTLEPC H+GR+PPC++ +++ G+ RVVV DPD RVSG G++ L Sbjct: 129 AAGANAKGCTAYVTLEPCDHFGRTPPCSRALVDAGVTRVVVGFVDPDPRVSGGGIRTLLD 188 Query: 122 KGI-IVDRMMESEGKIFLHAYLTRQ 145 GI + E E + ++ R Sbjct: 189 AGIEVCVGCCEEECREINADFIARN 213 >gi|115388877|ref|XP_001211944.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114196028|gb|EAU37728.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 624 Score = 148 bits (375), Expect = 1e-33, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 97/202 (48%), Gaps = 24/202 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + H+TL A S D+ I + ++G +K H LR++ DAIL+G+GTVLAD+P L Sbjct: 393 QFPHVTLSYASSMDSKISLLPGMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGL 452 Query: 208 TCRLNGLQE-------HSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252 CRL G P +++DP + + ++++TA AP ++V+ Sbjct: 453 NCRLEGAGGFGGLGRMWQPRPVVIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQI 512 Query: 253 DPVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-- 304 DP + + + + + + +L L G+ S+++EGG V +N Sbjct: 513 DPQKLMMLKGYGGDFLRIVEYNQNWRLRWEGILRALASEGIKSVMIEGGGTVLSELLNPE 572 Query: 305 -SRLVDSIILYRSQIVIGEGGI 325 + +D+II+ + +G GG+ Sbjct: 573 YTEFIDTIIVTVAPTYLGSGGV 594 >gi|224009578|ref|XP_002293747.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220970419|gb|EED88756.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 256 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 11/160 (6%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDG----IVIGRGVTAYGGCPHAEV 57 +++ D + M A+R +R G T NP+V C++V G +IG G G PHAEV Sbjct: 96 SLTTSDVQHMKLAVRLARIGYGNTFPNPAVGCVLVSHGDDSSSIIGSGFHPKAGMPHAEV 155 Query: 58 QALEEAGEEARGA----TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL EA A TAYVTLEPC H G++PPCA ++ GI RVVV DP+ RV G Sbjct: 156 FALLEACGHDHFADSNVTAYVTLEPCCHEGQTPPCALSLVVAGINRVVVGFRDPNPRVDG 215 Query: 114 RGLQWLSQKGI---IVDRMMESEGKIFLHAYLTRQVEKRS 150 G+Q L GI +++ E + ++ R Sbjct: 216 GGIQLLKDAGIDVHVMEVESAQECTKLVEYFVKRISPDSP 255 >gi|330467994|ref|YP_004405737.1| deaminase-reductase domain-containing protein [Verrucosispora maris AB-18-032] gi|328810965|gb|AEB45137.1| deaminase-reductase domain-containing protein [Verrucosispora maris AB-18-032] Length = 235 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 88/225 (39%), Gaps = 12/225 (5%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R ++ L A S D I A + ++ ++V +RA DAILVG GTV DDP L Sbjct: 8 RRPYVLLSCATSIDGYIDDATDERLMLSNDADLDRVDEVRASCDAILVGAGTVRRDDPRL 67 Query: 208 TCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 R + + SP+R+ + L ++ ++ Sbjct: 68 LVRCDRRRADRIARGLPESPIRVTVTGCGDLDPTARFFTVGDTERIVYCASAACEKTRHR 127 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ + D DL + LT L RGV LLVEGGA V F+ + L D + L + Sbjct: 128 VGERATVVDAGDPIDLARALTDLADRGVRRLLVEGGALVHGQFLTAGLADELHLVVAPFF 187 Query: 320 IGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360 +G+ P + +G + V G V Y C Sbjct: 188 VGDRRAPRFVGDGRFPWHSARRAQVVEARQIGDVVLTRYALSERC 232 >gi|292492106|ref|YP_003527545.1| bifunctional deaminase-reductase domain protein [Nitrosococcus halophilus Nc4] gi|291580701|gb|ADE15158.1| bifunctional deaminase-reductase domain protein [Nitrosococcus halophilus Nc4] Length = 364 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 97/235 (41%), Gaps = 17/235 (7%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L + ++ +A + D I A S I+ + H LRA DA+LVG Sbjct: 130 CLTGHHIASQNHSPWVSGHLAQTLDGKIAAASGHSQWISNHADRKHAHRLRALHDAVLVG 189 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDP 254 T+ D+P LT R +Q +P R++LD H L K+ + ++ + + D Sbjct: 190 RSTIEKDNPRLTVR--EVQGENPDRVVLDRHCHLLAGEKLYRIFHEPGNNWLLHSGSLDK 247 Query: 255 VLALAFRKKNINIIYCDCR---------DLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 V + + + + DLK +L + G+ S+ VEGG F+ + Sbjct: 248 VTERYPIPEKVTPLPIRNQEGKNDSKIMDLKAVLEAIWSIGIRSVFVEGGGKTLSLFLAA 307 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLE---EGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D + L+ + +++G G+PS + E + + Y ++ LE + + Sbjct: 308 GRTDLLHLHIAPLLLGS-GLPSFQLSPVDRIQEGTYFHMTHFYLDKEILLECVPR 361 >gi|322706817|gb|EFY98397.1| riboflavin biosynthesis protein Rib7 [Metarhizium anisopliae ARSEF 23] Length = 546 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 105/233 (45%), Gaps = 29/233 (12%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R +TL A S D+ + +A ++G SK H LR++ AILVG+ TVLAD+P L Sbjct: 308 NRPFVTLTFATSLDSSLSLAPGVRTHLSGPGSKAMTHYLRSRHAAILVGVSTVLADNPGL 367 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDS--KIIK----TALLAPVIIVT------ENDDPV 255 +CR+ G P II+DPH + + S ++ + A LAP I+ + Sbjct: 368 SCRIEG-SASQPRPIIIDPHLRWTPRSSDQVFQICRSGAGLAPFILTGLLEAQIPRESVE 426 Query: 256 LALAFRKKNINIIYCDC------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSR 306 L K I I + + L+ G+TS++VEGG + +S + N Sbjct: 427 LLQQHGGKYIRIAPATSSKDRVRFEWNDVFQTLLSEGLTSVMVEGGGQIINSLLSPTNHN 486 Query: 307 LVDSIILYRSQIVIGEGG-IPSP------LEEGYLEKNFMCVRRDYFGSDVCL 352 L+DS+I+ + +G+GG + SP V FG DV L Sbjct: 487 LIDSVIVTIAPTWLGKGGVVVSPDRVCDAEGTPQAAARLSNVSWHPFGEDVVL 539 >gi|149909528|ref|ZP_01898182.1| putative riboflavin deaminase [Moritella sp. PE36] gi|149807433|gb|EDM67384.1| putative riboflavin deaminase [Moritella sp. PE36] Length = 144 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 69/126 (54%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +FM AL S+ + NP V C++VKD I++ G T G HAE QA+ G Sbjct: 6 DEKFMLRALELSKLALPNCRPNPPVGCVLVKDNIIVSEGYTQAPGQHHAEAQAIANYGAA 65 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126 TAYVTLEPCS GR+P CA + I+RVVV DPD R SG+GL L GI V Sbjct: 66 LNDITAYVTLEPCSFVGRTPSCAHTLAGLNIKRVVVATVDPDPRNSGKGLSVLRNAGIDV 125 Query: 127 DRMMES 132 + + Sbjct: 126 EVGVCQ 131 >gi|307328879|ref|ZP_07608049.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] gi|306885544|gb|EFN16560.1| riboflavin biosynthesis protein RibD [Streptomyces violaceusniger Tu 4113] Length = 297 Score = 148 bits (374), Expect = 1e-33, Method: Composition-based stats. Identities = 83/316 (26%), Positives = 119/316 (37%), Gaps = 76/316 (24%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 +S + M A+ S +G TS NP V C+I+ +DG+ +G G G HAEV AL Sbjct: 3 TSNELTAMRRAIAISAQGLGTTSPNPPVGCVILDRDGVPVGEGYHLRKGDHHAEVNALTA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AGE A G TA VTLEPC+H+GR+PPC Q +I+ + RV++ V DP R G L Q Sbjct: 63 AGERAEGGTAVVTLEPCNHHGRTPPCRQALIDAKVSRVLMAVMDPTSR-GEGGAAVLEQA 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++E E + L +L R HIT V D + Sbjct: 122 GIEVERGVLEQEALLVLGPWLHSLRTGRPHITWAYTVGADGFDEDGAGIA---------- 171 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 LR D ++ R ++E +P Sbjct: 172 ---ELRRTHDLVI--------------RRTGAIEEGAP---------------------- 192 Query: 242 LAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL----LTILVGRGVTSLLVEGGAA 297 + L + L L G S+L+EG A Sbjct: 193 -------------------GGHGTEVFRTPSGPLGDVPGKALGTLADAGARSVLIEGSAN 233 Query: 298 VAHSFINSRLVDSIIL 313 + + VD +I+ Sbjct: 234 EVAQLL-ADAVDRLII 248 >gi|170740596|ref|YP_001769251.1| deaminase-reductase domain-containing protein [Methylobacterium sp. 4-46] gi|168194870|gb|ACA16817.1| bifunctional deaminase-reductase domain protein [Methylobacterium sp. 4-46] Length = 243 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 6/175 (3%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 + + ++ S D I S I + + +H LRA DAI+VGIGTVLADDP LT Sbjct: 33 QPFVIAQLGQSLDGRIATLSGDSKYINRGAALDHLHRLRAHVDAIVVGIGTVLADDPLLT 92 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINII 268 R + HSP R+I+DP ++ ++ ++ +++ P + + + + Sbjct: 93 VRR--VPGHSPARVIIDPAGRIPPGAQCLREDGARRILVCG----PQARVPPGVEVLRME 146 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + ++ L G +L+EGGA +FI++ +D + + + +++G G Sbjct: 147 EPSPFPPRAVIAALGRLGFARILIEGGARTISAFIDAGAIDRLHVMVAPLLLGSG 201 >gi|222478886|ref|YP_002565123.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Halorubrum lacusprofundi ATCC 49239] gi|222451788|gb|ACM56053.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Halorubrum lacusprofundi ATCC 49239] Length = 236 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 26/230 (11%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A S D + + I+G ++V +RA +DA+LVG+GTVLADDP LT Sbjct: 1 MHVVVNAAQSVDGKLATRRREQLRISGPEDFDRVDRVRAAADAVLVGVGTVLADDPHLTL 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 RL + +P R+++D + D++I+ A ++V+ + P A Sbjct: 61 DEEDRRVERLRNGRPGNPARVVVDSTGRTPTDARILDDA-ATTYLLVSASAPPERREALA 119 Query: 262 KKNINIIYC--------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 ++ D DL + L RG+ L+VEGG V +S + L Sbjct: 120 AAGAEVVVVEGGSGTERESESDGDHVDLVAGIHALAERGIDRLMVEGGGEVIYSCFAAGL 179 Query: 308 VDSIILYRSQIVIGEGGIPSPLEEGYLEKNF---MCVRRDYFGSDVCLEY 354 VD + +Y +VIG P+ + + F V + + L Y Sbjct: 180 VDELHVYVGSMVIGGRDAPTLADGEGFTEAFPRLDLVDTERLDDGIVLSY 229 >gi|111221324|ref|YP_712118.1| putative riboflavin/cytosine deaminase [Frankia alni ACN14a] gi|111148856|emb|CAJ60534.1| Putative riboflavin/cytosine deaminase (partial) [Frankia alni ACN14a] Length = 245 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 91/229 (39%), Gaps = 15/229 (6%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R R ++ A+S D I + ++G +V +RA DAILVG TV D Sbjct: 14 RPPALRPYVICSCAMSLDGRIDDCSQARLILSGPADLERVDEVRAGCDAILVGAETVRRD 73 Query: 204 DPELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 DP L R + +P++++L L S++ T + ++ Sbjct: 74 DPRLAVRAEHRRAARVAAGLPPTPVKVVLSGGGDLDPRSRVFGTDPVDTLVYRRAGSAAP 133 Query: 256 LALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 ++++ R D+ +L L RGV LLVEGG +V +F+ + LVD + Sbjct: 134 PPSWSAAPRVSVVDLPGRPWVDVAAVLADLDRRGVRRLLVEGGTSVHTAFLTAGLVDELH 193 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGK 357 L + +GE P+ + G ++ V L Y+ Sbjct: 194 LAVAPFFVGERDAPAFVGPGAFPQDVRSPLRLAEVRQLDDVVLLRYLAP 242 >gi|322371685|ref|ZP_08046228.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus paucihalophilus DX253] gi|320548570|gb|EFW90241.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haladaptatus paucihalophilus DX253] Length = 210 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 14/214 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ + A+S D + V I+G ++V LR +SDAI+VG+GTVLADDP LT Sbjct: 1 MHVVVNAAMSADGKLSSRQREQVAISGADDFDRVDDLRVESDAIVVGVGTVLADDPSLTA 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNIN 266 + +P+R++ D + LD++++ A ++ P V AL ++ Sbjct: 61 ----DEGVNPVRVVADSKARTPLDARVLDD--RADTLVFVAESAPNRNVRALREAGADVV 114 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + L + + L RG ++VEGG + S + LVD + LY +VIG P Sbjct: 115 VAGNGRVALGQAFSELESRGTKRVMVEGGGELIFSLFDGGLVDELRLYVGSVVIGGRDAP 174 Query: 327 SPLE-EGYLEKN----FMCVRRDYFGSDVCLEYI 355 + + +G++E+ + V L Y+ Sbjct: 175 TLADGDGFVERRSFPDLDLDSVERVDDGVLLRYL 208 >gi|16125138|ref|NP_419702.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15] gi|221233866|ref|YP_002516302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Caulobacter crescentus NA1000] gi|13422148|gb|AAK22870.1| riboflavin biosynthesis protein RibD [Caulobacter crescentus CB15] gi|220963038|gb|ACL94394.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Caulobacter crescentus NA1000] Length = 331 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 83/302 (27%), Positives = 121/302 (40%), Gaps = 40/302 (13%) Query: 27 TNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQAL---EEAGEEARGATAYVTLEPCSHY 82 NP V C+++ G + G HAE AL E G AR T VTLEPC+H+ Sbjct: 32 PNPPVGCVVLDAAGETLAVAAHQRAGQAHAEAAALAACRERGAAARIDTLLVTLEPCNHH 91 Query: 83 GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIF----- 137 GR+PPC + I+ R V + V DP++ V+G G L G+ V + + Sbjct: 92 GRTPPCVEAILASPARTVWIAVRDPNLAVAGGGAARLEAAGLEVRFLSDLAHPEASDLVR 151 Query: 138 -----LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 + + E R +T+K A+++ + S T S H LR ++DA Sbjct: 152 RARRLIAPFALWAREGRPWLTIKQAINRQGDMIPPPGAST-FTSETSLTLAHDLRRRADA 210 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRI-ILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 I+ G GTVLAD P T R R+ ILD + D Sbjct: 211 IITGSGTVLADAPAFTVRRTPDPRPFARRLAILDRRRRTPGDY----------------- 253 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 A + + D L L++ L GV LVE G + S + + L D Sbjct: 254 -----IAAAEGRGFRVSLHDA--LPSLVSELAADGVLEALVECGPTLLASVLETGLWDEH 306 Query: 312 IL 313 ++ Sbjct: 307 VV 308 >gi|224438172|ref|ZP_03659107.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] gi|313144617|ref|ZP_07806810.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] gi|313129648|gb|EFR47265.1| riboflavin biosynthesis protein RibD [Helicobacter cinaedi CCUG 18818] Length = 330 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 60/262 (22%), Positives = 105/262 (40%), Gaps = 41/262 (15%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 ++S D + + L NPSV +I + +G ++ RGV + G PHAEV A++ Sbjct: 1 MNSSDDLLIKHCCDIAWEAQTLALPNPSVGAIITRENGEILSRGVHSLAGSPHAEVIAIK 60 Query: 62 EAGEEA---------------------------RGATAYVTLEPCSHYGRSPPCAQFIIE 94 +A + + YV+LEPC+HYG++PPCA I E Sbjct: 61 QAYFTLTQDSKILNLESSLELHNFLLHNHNGIFKNHSLYVSLEPCNHYGKTPPCANLIKE 120 Query: 95 CGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV--DRMMESEGKIFLHAYLTRQVEKRSHI 152 G +VV+ D ++ G+Q L + GI ++ K+ L + R+ + Sbjct: 121 LGFAKVVIGTKDSHS-LASGGMQTLQEAGIHTSLSQIQNEAQKLLLPFEILREKGRFVLF 179 Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL- 211 + + + + G I+ S+ H R+ D + + T+ +D+P L R Sbjct: 180 KIAMRLDGSYVNG-------QISAESSRIFTHNQRSVCDYLCISGATLRSDNPTLNARYA 232 Query: 212 --NGLQEHSPMRIILDPHFKLS 231 + P + H Sbjct: 233 LPPYDKHKQPKLCLFSKHENNP 254 >gi|58531995|emb|CAE04095.3| OSJNBa0096F01.4 [Oryza sativa Japonica Group] Length = 633 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 116/237 (48%), Gaps = 18/237 (7%) Query: 57 VQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 V AL +A + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ V+ +G+ Sbjct: 47 VFALRDARDLAENATAYVSLEPCNHYGRTPPCTEALINAKLKDVVVGMTDPNPIVASKGI 106 Query: 117 QWLSQKGIIVDRMMESE--GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVP 173 + L GI V ME E + AY+ + ++ TL+ +S + ++ G G+ Sbjct: 107 ERLQSAGIDVRVCMEEEALCRNLNEAYIHCMLTGKAFATLRTTLSVNGVVVNQIGTGADQ 166 Query: 174 ITGFISKNQVHLLRAQSDAILV-GIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL 232 G+ S L + D +++ GI + P T G P+ II+ L Sbjct: 167 PGGYYS-----QLLKEYDGVIISGISVNMTTLP--TSHEAGA--KQPLYIIIAQGGNSQL 217 Query: 233 DSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + + ++ + +++T D PV + + ++ D L+ +L IL RG+ Sbjct: 218 NIQFLREECASEAVVLT--DSPVTV---KPPGVEVLVLDRMSLEFILEILAQRGLCR 269 >gi|302507506|ref|XP_003015714.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma benhamiae CBS 112371] gi|291179282|gb|EFE35069.1| riboflavin biosynthesis protein Rib7, putative [Arthroderma benhamiae CBS 112371] Length = 645 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 31/251 (12%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + K H+TL A S D I ++G +K H LR++ DA Sbjct: 366 EDHNHGNDNSNSGETKFPHVTLTYAQSMDGKISTKPGVQTLLSGPETKAMTHYLRSRHDA 425 Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242 I++G+GT LADDP L CRL G P +I+DP + S +S+++KTA Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485 Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291 AP +IV+ + P + ++ + + + + + L +G+ S++ Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545 Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341 +EGG V +N VDS+I+ + +G G+ + L + Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605 Query: 342 RRDYFGSDVCL 352 + G DV + Sbjct: 606 KWQPLGKDVIM 616 >gi|327292501|ref|XP_003230949.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892] gi|326466886|gb|EGD92339.1| riboflavin-specific deaminase [Trichophyton rubrum CBS 118892] Length = 645 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 64/251 (25%), Positives = 107/251 (42%), Gaps = 31/251 (12%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + +A K H+TL A S D I ++G SK H LR++ DA Sbjct: 366 EDHNYGNANPNSGETKFPHVTLTYAQSMDGKISSKPGVQTVLSGPESKAMTHYLRSRHDA 425 Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242 I++G+GT LADDP L CRL G P +I+DP + S +S+++KTA Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485 Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291 AP +IV+ + P + ++ + + + + + L +G+ S++ Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545 Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341 +EGG V +N VDS+I+ + +G G+ + L + Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605 Query: 342 RRDYFGSDVCL 352 + G DV + Sbjct: 606 KWQPLGKDVIM 616 >gi|153833299|ref|ZP_01985966.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] gi|148870435|gb|EDL69356.1| riboflavin biosynthesis protein RibD [Vibrio harveyi HY01] Length = 159 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 55/126 (43%), Positives = 78/126 (61%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +FM AL SR + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 21 QQFMLRALEVSRNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYNGDL 80 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD+R +GRG+ L + G+ V+ Sbjct: 81 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDLRNAGRGIDILKEGGVEVE 140 Query: 128 RMMESE 133 + E Sbjct: 141 IGLCGE 146 >gi|91792826|ref|YP_562477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] gi|91714828|gb|ABE54754.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella denitrificans OS217] Length = 142 Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats. Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M AL S+ + NP V C++VKDG V+G+G T G HAEV+AL + Sbjct: 3 EEYMLIALELSKKALPHCLPNPPVGCVLVKDGQVVGQGFTQVIGGNHAEVEALNSYTGDL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 G TAYVTLEPCS GR+P CA + G++ +V+ + DPD R +G+GL L GI + Sbjct: 63 AGVTAYVTLEPCSFVGRTPACAARLAHSGLKHLVLAMLDPDSRNNGKGLAMLQHAGINVE 122 Query: 127 DRMMESEGKIFLHAY 141 + E++ FL Y Sbjct: 123 LGICEAQASAFLSPY 137 >gi|147918769|ref|YP_687507.1| riboflavin specific deaminase [uncultured methanogenic archaeon RC-I] gi|110622903|emb|CAJ38181.1| predicted riboflavin specific deaminase [uncultured methanogenic archaeon RC-I] Length = 225 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 54/219 (24%), Positives = 95/219 (43%), Gaps = 14/219 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLA 202 KR ++ + ++ D + + S I S +H R++ DAI+VG T+ Sbjct: 1 MKRPYVEVISEMTVDGKLTLKRGLSSKIIMGLMDEHSHYFLHKKRSEFDAIMVGSNTIKI 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+ LT RL SP+R+I + L + ++ +I V+E D A R Sbjct: 61 DNSILTNRL--ATGASPIRVIPCSDGSIPLTANVLNKD-APTLICVSEKADACRVEAIRN 117 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 ++ C D D+ L+ L RG+ L+VEGG + I+ +++D I L + +I Sbjct: 118 TGAEVVICGRDRIDIDLLMDTLYNRGIRRLMVEGGPTLIWQLISRKMIDHITLIQIPYII 177 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 G PS + ++ V+ + G+ + EY Sbjct: 178 GGDSTPSLVGGPGVDSIDKVVQVNLTDFYKVGNHLITEY 216 >gi|145607321|ref|XP_361694.2| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15] gi|145014902|gb|EDJ99470.1| hypothetical protein MGG_12162 [Magnaporthe oryzae 70-15] Length = 289 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 30/232 (12%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D+ + +A ++G SK H LR++ DAIL+G GT +ADDP L C Sbjct: 53 PFVTLTFATSLDSALSLAPGVRTTLSGPQSKAMTHFLRSRHDAILIGAGTAVADDPGLNC 112 Query: 210 RLNGLQEHSPMRIILDPHFKLSLD--SKIIKTALL----APVIIVTEND----DPVLALA 259 R+ E P I++DP + S SK+++ A AP +I T D Sbjct: 113 RIQDA-ESQPRPIVVDPRCRWSFHERSKVLQLAGEGRGLAPFVITTPEAAAAIDEQKRAL 171 Query: 260 FRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NSRL 307 I D +L L G+ S++VEGG V ++ + + L Sbjct: 172 LESHGGKYISLKYGGSSDDGVLDWNDILAALQHEGLNSVMVEGGGHVINTLLGHKDKNDL 231 Query: 308 VDSIILYRSQIVIGEGG-IPSPLEEGYLEKN------FMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG + SP E N + G DV L Sbjct: 232 VDSVIITIAPTWLGQGGVVVSPAREVDESGNPKAALRLTNLSWHPLGDDVVL 283 >gi|302666117|ref|XP_003024661.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton verrucosum HKI 0517] gi|291188727|gb|EFE44050.1| riboflavin biosynthesis protein Rib7, putative [Trichophyton verrucosum HKI 0517] Length = 645 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 31/251 (12%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + K H+TL A S D I ++G +K H LR++ DA Sbjct: 366 EDHNHGNDNSHSGETKFPHVTLTYAQSMDGKISTKPGVQTLLSGPDTKAMTHYLRSRHDA 425 Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242 I++G+GT LADDP L CRL G P +I+DP + S +S+++KTA Sbjct: 426 IIIGLGTALADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEG 485 Query: 243 ---APVIIVTENDD--PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLL 291 AP +IV+ + P + ++ + + + + + L +G+ S++ Sbjct: 486 KGKAPWVIVSPGAELLPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545 Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCV 341 +EGG V +N VDS+I+ + +G G+ + L + Sbjct: 546 IEGGGVVLSELLNPEYVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHNI 605 Query: 342 RRDYFGSDVCL 352 + G DV + Sbjct: 606 KWQPLGKDVIM 616 >gi|119384080|ref|YP_915136.1| riboflavin biosynthesis protein RibD [Paracoccus denitrificans PD1222] gi|119373847|gb|ABL69440.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Paracoccus denitrificans PD1222] Length = 219 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 65/144 (45%), Positives = 77/144 (53%), Gaps = 1/144 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +R G NP V C+IVKDG +I G T GG PHAE AL AG ARGA Sbjct: 1 MGRALALARRMRGHVWPNPPVGCVIVKDGTIIAEGETQPGGRPHAERLALNRAGAAARGA 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 T YVTLEPC H+GR+PPCA II G+ RVV + DPD RV G G L GI V Sbjct: 61 TLYVTLEPCCHWGRTPPCADAIIAAGVTRVVAAMQDPDPRVDGGGFARLRAAGIEVTVGE 120 Query: 131 ES-EGKIFLHAYLTRQVEKRSHIT 153 + + + +L R + Sbjct: 121 GATDAAAIMSGFLHRTRTGEPELI 144 >gi|77164589|ref|YP_343114.1| bifunctional deaminase-reductase-like [Nitrosococcus oceani ATCC 19707] gi|254433288|ref|ZP_05046796.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Nitrosococcus oceani AFC27] gi|76882903|gb|ABA57584.1| bifunctional deaminase-reductase-like protein [Nitrosococcus oceani ATCC 19707] gi|207089621|gb|EDZ66892.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Nitrosococcus oceani AFC27] Length = 364 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 56/236 (23%), Positives = 96/236 (40%), Gaps = 19/236 (8%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L + ++ I+ +A + D I A S I+ + + H LRA DA+LVG Sbjct: 130 CLAGHHIASQKRLPWISAHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVG 189 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL------------SLDSKIIKTALLAP 244 GTV D+P LT R + +P R+ILD L + ++ + L Sbjct: 190 RGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLTGEKPYRIFQEPGHNWLLHSDSLNK 247 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + + V+ L R + DLK +L + G+ S+ VEGG F+ Sbjct: 248 IETHHAIPEKVIPLGVRNQAGE-KNGKLMDLKAVLETIWSLGIRSVFVEGGGKTLSFFLA 306 Query: 305 SRLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 D + L+ + +++G G+PS P E + + ++ LE + + Sbjct: 307 GGQTDLLHLHIAPLLLGS-GLPSFQLPPVARIQEGTYFHMTHFCLDKEILLECLPR 361 >gi|156977316|ref|YP_001448222.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio harveyi ATCC BAA-1116] gi|156528910|gb|ABU73995.1| hypothetical protein VIBHAR_06102 [Vibrio harveyi ATCC BAA-1116] Length = 201 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 54/126 (42%), Positives = 76/126 (60%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +FM AL S + NP V C++VKDG ++ G T G HAEV+AL+ + Sbjct: 63 QQFMLRALEVSLNALPACQPNPPVGCVLVKDGEIVSEGHTQAIGGNHAEVEALKAYKGDL 122 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 TAYVTLEPCS GR+P CA+ ++ CGI++VVV + DPD R +GRG+ L + G+ V+ Sbjct: 123 SDVTAYVTLEPCSFVGRTPACAKTLVTCGIKKVVVAMLDPDPRNAGRGIDILKEGGVEVE 182 Query: 128 RMMESE 133 + E Sbjct: 183 IGLCGE 188 >gi|255935949|ref|XP_002559001.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255] gi|211583621|emb|CAP91636.1| Pc13g05670 [Penicillium chrysogenum Wisconsin 54-1255] Length = 607 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 103/236 (43%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + H+TL A S D+ I + ++G +K H LR++ DAILVG+GTVLAD+P L Sbjct: 362 EFPHVTLSYASSMDSKISLQPGMQTVLSGPEAKLMTHYLRSRHDAILVGVGTVLADNPGL 421 Query: 208 TCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND-- 252 CRL + P +I+DP + + ++++TA AP ++++ Sbjct: 422 NCRLEGAGGFGGLGRMWQPRPVIIDPMGRWPVHPECRMLRTAVEGKGKAPWVVLSPGAQI 481 Query: 253 DPVLALAFRKKN------INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 +P + + + + + L G+ S+++EGG V +N Sbjct: 482 NPQTLVMLKGYGGDFLRIVEYNQHWRLRWEAVFRALASEGIKSVMIEGGGTVLSELLNPE 541 Query: 307 ---LVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 +DSII+ + +G GG+ + ++ N V+ G +V + Sbjct: 542 YTSFIDSIIVTVAPTYLGRGGVNVSPDSKQDQEGTPNAALNPRDVKWMPLGQNVIM 597 >gi|296536225|ref|ZP_06898343.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] gi|296263447|gb|EFH09954.1| riboflavin biosynthesis protein RibD [Roseomonas cervicalis ATCC 49957] Length = 280 Score = 146 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 11/206 (5%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++A + D I AG S I G H LRA DA+LVG GTV DDP LT R Sbjct: 64 RLAQTLDGRIATAGGSSQWIGGPGDLLHTHRLRALCDAVLVGAGTVKHDDPRLTTR--DC 121 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD--- 271 P+RIILD L + ++ +++ E+ R ++ Sbjct: 122 PGPDPVRIILDTSRTLGTEYRVFAEGGPPTLLVCAEDAAERGLPRDRHGAAEVLRAPRAA 181 Query: 272 --CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D+ LL L RG+ + VEGG F+ + +D + + + +++G GIP+ Sbjct: 182 IGGLDIATLLPKLAARGLRRIFVEGGGLTVSRFLAAGCLDRLHVTVAPVLLGS-GIPAFT 240 Query: 330 --EEGYLEKNFMCV-RRDYFGSDVCL 352 E + G DV Sbjct: 241 LPEAARIADGLRFAWGVHRLGEDVLF 266 >gi|167914873|ref|ZP_02501964.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 112] Length = 112 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 52/106 (49%), Positives = 65/106 (61%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 AGE ARGATAYVTLEPC+H+GR+PPCA ++ G+ RVV+ DP Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAAGVARVVIAARDPF 109 >gi|24213844|ref|NP_711325.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira interrogans serovar Lai str. 56601] gi|45658378|ref|YP_002464.1| hypothetical protein LIC12536 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24194684|gb|AAN48343.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira interrogans serovar Lai str. 56601] gi|45601621|gb|AAS71101.1| RibD [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 466 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 111/219 (50%), Gaps = 8/219 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59 ++S +F + S +G +S NP V+CLI V++ + +G T+ G PHAE A Sbjct: 1 MTSLPEKFREELRKLSFLSMGESSPNPPVSCLITDVENKRIFAKGRTSPTGGPHAERNAY 60 Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116 G ++ +VT EPC+H+G++PPC I+E + + + DP+ V L Sbjct: 61 YEFINNGLLSKPHNVWVTFEPCTHHGKTPPCLDLILEHKPKTLYYGLKDPNPLVRKNEGL 120 Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + GI + D ++ + L +++R +++ + +K AVS++ +V + Sbjct: 121 EICRNAGIQVVSDFGLKEIAEESLFGFISRIEKQKPSMIIKSAVSKEGFFTTKDKATVRL 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +G +S +LRA+ DA+L+G T+ D P L R+ G Sbjct: 181 SGNLSDRLTSILRAKCDAVLIGPRTLFQDLPGLDFRIGG 219 >gi|163794376|ref|ZP_02188348.1| bifunctional deaminase-reductase-like protein [alpha proteobacterium BAL199] gi|159180544|gb|EDP65065.1| bifunctional deaminase-reductase-like protein [alpha proteobacterium BAL199] Length = 261 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 93/206 (45%), Gaps = 10/206 (4%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN 212 ++ + D I S + G + + +H LRA DA+++G GT + DDP LT R Sbjct: 62 IGQLGQTLDGRIATVSGHSHYVNGSEALDHLHRLRALVDAVVIGAGTAVDDDPSLTTRR- 120 Query: 213 GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC 272 ++ +P+R++LDP ++ D K+ + AP ++ PV A R Sbjct: 121 -VEGSNPVRVLLDPSGRVPADRKLFRDG-QAPTLVCG----PVRPGAERLDTSGDQETQ- 173 Query: 273 RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPSPLE 330 R + +L L RG +LVEGGA A SF+++R +D + L + ++G G GI P Sbjct: 174 RSPRDVLAALSARGFDIVLVEGGAKTASSFLDARCIDRLHLLVAPTLLGSGRPGIVLPEV 233 Query: 331 EGYLEKNFMCVRRDYFGSDVCLEYIG 356 RR G D + Sbjct: 234 MTMDGARRFDSRRYTLGDDTLFDLTP 259 >gi|223041133|ref|ZP_03611388.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267] gi|222877627|gb|EEF12753.1| riboflavin biosynthesis protein RibD [Campylobacter rectus RM3267] Length = 362 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 63/287 (21%), Positives = 107/287 (37%), Gaps = 55/287 (19%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQA------ 59 D +MS A++ + LT NP+V C+++ G ++ G HAE A Sbjct: 4 DEFYMSLAIKKAWEFQILTYPNPAVGCVVLDAGGRLLSVAAHKRAGFLHAEPSAVLLALC 63 Query: 60 ------------------------------------------LEEAGEEARGATAYVTLE 77 L+ G+ +GA AYVTLE Sbjct: 64 KKSEAFLHDFLREYNAALGIKFESVAELTNADLEPNFTYEYILQNHGDLLKGAKAYVTLE 123 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PC+H G++PPCA+ + VV+ D + V+ G L G+ + ++ Sbjct: 124 PCAHRGKTPPCAELLRLLKFAEVVIARGDENA-VASGGAHILQSGGVAVKFDVLRQGADE 182 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 + +L Q S L ++ + + + S I+ S+ H LR+ ++ +++G Sbjct: 183 LIEPFLAWQRGNFSFFKLALSANG---VAVGTAQSKIISNLASRTHSHRLRSAAELLVIG 239 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 TV AD P L RL +P II + + + Sbjct: 240 GATVRADRPRLDTRLIE-DGKNPNVIIYSREREFDASIPLFGVEGRS 285 >gi|307329731|ref|ZP_07608887.1| bifunctional deaminase-reductase domain protein [Streptomyces violaceusniger Tu 4113] gi|306884571|gb|EFN15601.1| bifunctional deaminase-reductase domain protein [Streptomyces violaceusniger Tu 4113] Length = 348 Score = 146 bits (368), Expect = 6e-33, Method: Composition-based stats. Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 6/225 (2%) Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 E ++ + YL + ++ S D I + +TG + +H LRA +D Sbjct: 43 PEARLLVDRYLPLCLAGPRLTIAQLGQSLDGFIATRTGDADFVTGEEDRRHLHRLRALAD 102 Query: 192 AILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 A++VG GT +ADDP+LT R P+R++LDP ++ LD ++ + +V Sbjct: 103 AVVVGAGTAVADDPQLTVRACAGTH--PVRVVLDPRGRVPLDRRVFTDGSAPTLWVVGAT 160 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 + A + + + D +L+ L RG+ +L+EGG F+++ + + Sbjct: 161 GERRPAPPDGVELLTLTEPDAFAPHQLVRALRRRGLGRVLIEGGGVTVSRFLHAGALHRL 220 Query: 312 ILYRSQIVIGEGGIPSPLEEGYLEKNFM---CVRRDYFGSDVCLE 353 + + +++G+ GIP +G VRR G D E Sbjct: 221 YVTVAPVLLGD-GIPGLRFDGTPVMRDALRPPVRRSTLGEDTLFE 264 >gi|307352940|ref|YP_003893991.1| bifunctional deaminase-reductase domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156173|gb|ADN35553.1| bifunctional deaminase-reductase domain protein [Methanoplanus petrolearius DSM 11571] Length = 227 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 53/217 (24%), Positives = 98/217 (45%), Gaps = 15/217 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 H+ + ++ D + + S I + +H RA+ DAI+VG T+ D+ Sbjct: 8 PHVLMMSEITVDGKLTLKKGASSKILMKYMDHATDILLHKTRAEYDAIMVGSNTINIDNS 67 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT R ++ SP+R+I + +S ++ +I V++ P K Sbjct: 68 FLTVR--SVKGKSPLRVIPSSRAAIPPESNVL-GPDAPTLIAVSKKASPENIRILEDKGA 124 Query: 266 NIIYC--DCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 +++ D DL L+ LV GV+ L++EGG + + + RLVD I L ++G Sbjct: 125 DVVCVGEDKVDLPLLMKTLVENYGVSKLMIEGGPTLNYYMLQDRLVDEIRLIHLPFIVGG 184 Query: 323 GGIPSPLEEGYL---EKNFMCVRRDYF--GSDVCLEY 354 PS + ++ E+ F ++Y+ G+++ EY Sbjct: 185 SDTPSLVGGMHIESEEEMFSLQLKNYYMCGTNLVTEY 221 >gi|258577771|ref|XP_002543067.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237903333|gb|EEP77734.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 612 Score = 146 bits (368), Expect = 7e-33, Method: Composition-based stats. Identities = 62/238 (26%), Positives = 105/238 (44%), Gaps = 31/238 (13%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 K H+TL A S D I +A ++G SK H LR++ DAILVG+GT LAD+P Sbjct: 349 NRKFPHVTLTYAQSMDGKISLAPGVQTALSGPESKLMTHYLRSRHDAILVGVGTALADNP 408 Query: 206 ELTCRLN-------GLQEHSPMRIILDPHFKLS--LDSKIIKTALL----APVIIVTEND 252 L CRL + P +I+DP + + + +++++AL P I+V+ Sbjct: 409 GLNCRLEGAGGYGGLGKMWQPRPVIVDPTGRWTFNPECRMLQSALAGKGKGPWIVVSPGA 468 Query: 253 D--PVLALAFRKKNINIIYCDCRDLKKLLT------ILVGRGVTSLLVEGGAAVAHSFIN 304 + L +K + + + L L G++S++VEGG V +N Sbjct: 469 NIPADRILLLKKHGGDFLRIAEFNPAWRLRWSTIFGALAAEGISSVMVEGGGVVLSELLN 528 Query: 305 ---SRLVDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352 +DS+I+ + +G GG+ +P + + V+ G D+ + Sbjct: 529 PEYEDFIDSVIVTVAPTYLGRGGVAVAPDSKRDDYGKPKIALKPKEVKWHPLGQDMIM 586 >gi|292655495|ref|YP_003535392.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax volcanii DS2] gi|291371668|gb|ADE03895.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Haloferax volcanii DS2] Length = 219 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 90/218 (41%), Gaps = 14/218 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT- 208 H+ + A S D + V I+G +V +RA +DA+ VG+GTVLADDP LT Sbjct: 1 MHVHVNAAASLDGKLSSRRREQVTISGDDDFARVDEIRATADAVAVGVGTVLADDPHLTL 60 Query: 209 -------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R + P R++ D + D++I+ A ++V+E A Sbjct: 61 DDPGLVAAREDRGDSPHPARVVADSRARTPTDARILDDA-ATTYLLVSEAAPGGRREALE 119 Query: 262 KKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ + L L RGV L+VEGG + S + LVD + LY +V Sbjct: 120 AAGAELVVAGAERVSLPDAFDALEARGVDRLMVEGGGELIFSLFEAGLVDELTLYVGSLV 179 Query: 320 IGEGGIPSPLEEGYLEKNFMCVR---RDYFGSDVCLEY 354 IG P+ + +F + + V L Y Sbjct: 180 IGGRDAPTLADGDGFVSDFPRLSLRDVERVDDGVLLTY 217 >gi|326470312|gb|EGD94321.1| riboflavin-specific deaminase [Trichophyton tonsurans CBS 112818] Length = 648 Score = 145 bits (367), Expect = 8e-33, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443 Query: 208 TCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDD- 253 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503 Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305 P + ++ + + + + + L +G+ S+++EGG V +N Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563 Query: 306 --RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G G+ + L ++ G DV + Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619 >gi|241203520|ref|YP_002974616.1| bifunctional deaminase-reductase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240857410|gb|ACS55077.1| bifunctional deaminase-reductase domain protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 222 Score = 145 bits (367), Expect = 9e-33, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 84/169 (49%), Gaps = 4/169 (2%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT 239 + H RA DAI+VG GTVL+DDPELT R +P+RI+ +L LD+K++ Sbjct: 36 RAWFHGQRAAHDAIMVGAGTVLSDDPELTVR--HAPGPNPLRIVPSSMGRLPLDAKLLND 93 Query: 240 ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAA 297 V++ + + K N+ ++ C R DL L+ IL RG+ S++VEGG+ Sbjct: 94 GHPTVVVVSRSAKEADIEALKSKPNVEVVRCGERRVDLPGLMNILDARGIKSMIVEGGSR 153 Query: 298 VAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF 346 + HS +RLV I++ ++ G PS + + F + Sbjct: 154 LLHSLHEARLVHRIVIKHIPVITGSADAPSYMRPDEYSRPFELSKWRLV 202 >gi|326481151|gb|EGE05161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Trichophyton equinum CBS 127.97] Length = 648 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 31/236 (13%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 K H+TL A S D I ++G +K H LR++ DAI++G+GT LADDP L Sbjct: 384 KFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKAMTHYLRSRHDAIIIGLGTALADDPGL 443 Query: 208 TCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL----APVIIVTENDD- 253 CRL G P +I+DP + S +S+++KTA AP +IV+ + Sbjct: 444 NCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASAESRLLKTAAEGKGKAPWVIVSPGAEL 503 Query: 254 -PVLALAFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINS- 305 P + ++ + + + + + L +G+ S+++EGG V +N Sbjct: 504 LPDKLMLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSIMIEGGGVVLSELLNPE 563 Query: 306 --RLVDSIILYRSQIVIGEGGIPSP-------LEEGYLEKNFMCVRRDYFGSDVCL 352 VDS+I+ + +G G+ + L ++ G DV + Sbjct: 564 YVDFVDSVIVTVAPTYVGRNGVSASPDSKQDELGNPINALTPHTIKWQPLGKDVIM 619 >gi|291276854|ref|YP_003516626.1| putative priboflavin-specific deaminase [Helicobacter mustelae 12198] gi|290964048|emb|CBG39888.1| putative priboflavin-specific deaminase [Helicobacter mustelae 12198] Length = 345 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 78/377 (20%), Positives = 140/377 (37%), Gaps = 79/377 (20%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEEAGEEA-- 67 MS ++ + LT NP+VA ++V +G ++ G PHAEV +L+EA + Sbjct: 8 MSLCIKKAWEFQTLTLPNPAVAAMVVSGEGEILSLCAHQKSGAPHAEVLSLKEAYYKLTK 67 Query: 68 -------------------------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 + + YVTLEPC+ YG++PPCA+ + GI+ V++ Sbjct: 68 DENIKNITNSQELHQILRNHHQNLFKDCSIYVTLEPCTCYGKTPPCAEILQSIGIKSVII 127 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + G+ + + R++E E + L +L +K+ K+A D Sbjct: 128 GALESTKNQGGKEM-LEKSGARVTARILEKECQDLLLPFLCY-QKKQRFSLFKLATRLDG 185 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH--SPM 220 I+ +K H R+ D I V T+ D+P L R +P Sbjct: 186 DYKSGS-----ISCSEAKIFTHNQRSVCDKIFVSQNTLRNDNPLLDARFCQEPFVFGAPD 240 Query: 221 RIILDPHFK-LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 I + K L D++I K+ ++ Sbjct: 241 VGIFSRNPKTLDADARIFS----------------------HKREVDFYSTKKSLP---- 274 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE--KN 337 +G ++EGG + + + +D ++++ S + P E+G L+ ++ Sbjct: 275 -----KGFN--IIEGGWKLFLALRDQ--IDMLLVHISPTL--SAKNPPFSEQGLLQGMED 323 Query: 338 F--MCVRRDYFGSDVCL 352 F + G D L Sbjct: 324 FSGELLHTQKLGEDALL 340 >gi|254420634|ref|ZP_05034358.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Brevundimonas sp. BAL3] gi|196186811|gb|EDX81787.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Brevundimonas sp. BAL3] Length = 209 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 62/156 (39%), Positives = 82/156 (52%), Gaps = 2/156 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + D FM+ A+ + +G T NP+V C+IVKDG +I + TA GG PHAE QA+ Sbjct: 1 MSWTDADRAFMAQAIDLATARMGETWPNPAVGCVIVKDGRIIAQAATAPGGRPHAEEQAV 60 Query: 61 EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 AG E GAT YVTLEPC CA F+ E G+ RVV+ DP +GRG + L Sbjct: 61 PAAGAEIEGATVYVTLEPCGARSSGRQSCAHFLTEAGVERVVIACLDPSPFAAGRGTERL 120 Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 KG + +M EG +L R R + + Sbjct: 121 RAKGLTVETGLMCDEGAALCEGFLHRLETGRPMVRI 156 >gi|260943049|ref|XP_002615823.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720] gi|238851113|gb|EEQ40577.1| hypothetical protein CLUG_04705 [Clavispora lusitaniae ATCC 42720] Length = 243 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 68/211 (32%), Positives = 98/211 (46%), Gaps = 16/211 (7%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL Q R +TL A S D+ I A I+ +K H LRA D+ILVG Sbjct: 13 FLKEYLPSQRTDRPFVTLTWAQSLDSRIAAAPGLQTKISHAETKTMTHYLRANHDSILVG 72 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-----TALLAPVIIVTEN 251 IGTVLADDP+L CR +++DPH K + LAP I+V Sbjct: 73 IGTVLADDPKLNCRYGNSHIRP---VVVDPHGKWDYSKSTLHKVCAEGKGLAPFILVGAQ 129 Query: 252 DDP--VLALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 P + I D + +++L +L + + S+++EGGA V +S + Sbjct: 130 VSPSSENKTNLSAQGGQFITIDFSLDRSLNWQRILHVLHQKDIASVMIEGGADVINSLLK 189 Query: 305 SRLVDSIILYRSQIVIGEGGIP-SPLEEGYL 334 S LVDS+I+ + +G+ G+ SP L Sbjct: 190 SDLVDSVIVTVGPVFLGKDGVEVSPSGGAEL 220 >gi|311694828|gb|ADP97701.1| protein containing bacterial bifunctional deaminase-reductase, C-terminal domain [marine bacterium HP15] Length = 290 Score = 145 bits (365), Expect = 1e-32, Method: Composition-based stats. Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 12/212 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + ++ S D I S I G +H +RA SDA++VG GT D+P LT Sbjct: 74 PKVIGQLGQSLDGRIATVTGRSRFINGDDGITHLHRIRAVSDAVVVGAGTATTDNPRLTV 133 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 R +P+R+++D H ++ + T AP + + + I Sbjct: 134 RRT--SGRNPVRVVIDRHHRVPDSHHLF-TDGEAPTLRLVAGTYEKAKNPSIGSGVTEIP 190 Query: 270 C-------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 C D D + +L +L G+ + VEGG F+N+ L+D + + + ++IG Sbjct: 191 CLGDAESEDAVDPRVILEVLADLGLKKVFVEGGGVTVSCFLNAGLLDRLHVMVAPMIIGS 250 Query: 323 GGIPSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 G L E + + R GSD+ Sbjct: 251 GRPAFSLPEIDFLDDALRPRAQLINLGSDMLF 282 >gi|288920814|ref|ZP_06415112.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp. EUN1f] gi|288347773|gb|EFC82052.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Frankia sp. EUN1f] Length = 242 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 57/224 (25%), Positives = 85/224 (37%), Gaps = 18/224 (8%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ L A+S D I + ++ ++V +RA DAILVG GTV DDP L Sbjct: 15 PHVVLSCAMSLDGRIDDCSPSRLILSSPADLDRVDEVRAGCDAILVGAGTVRRDDPGLAV 74 Query: 210 R--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI------IVTENDDPV 255 R + +P+R +L L ++I + V Sbjct: 75 RSQRRRDARTAAGRTPTPLRAVLTREGDLDPAARIFRDGADRVVYRATAGASGEAAASGG 134 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A + ++ L LL L GRGV LLVEGG + +F+ + LVD + L Sbjct: 135 AAASPLAAVATVVDLPEPPLASLLRDLTGRGVRRLLVEGGTTIHTAFLTAGLVDELHLVV 194 Query: 316 SQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355 + +GE P+ + G G V L Y+ Sbjct: 195 APFFVGEAAAPTFVGPGSFPFDAAHRLQLAEVSQLGDVVLLRYL 238 >gi|119715918|ref|YP_922883.1| deaminase-reductase domain-containing protein [Nocardioides sp. JS614] gi|119536579|gb|ABL81196.1| bifunctional deaminase-reductase domain protein [Nocardioides sp. JS614] Length = 231 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 86/221 (38%), Gaps = 12/221 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R + L +S D + A + ++ ++V +RA+SDAI+VG TV D+P Sbjct: 1 MPDRPYTLLSCGMSLDGYLDSASDQRLILSNDADLDRVDAVRAESDAIMVGAATVRNDNP 60 Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R ++ SP+++ + +L + T ++ T P Sbjct: 61 RLLVRDQERRDERVSRGLKPSPLKVTVTCAGRLDPRGRFFTTGESEKLVYCTSGGAPEAR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + ++++ L RGV L+VEGG + F+ L D + L + Sbjct: 121 SRLGAVATVVDGGPRVTMRRMSEDLHERGVRRLMVEGGGTIHTQFLTEDLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 +G+ +++G ++ V G V L Y Sbjct: 181 FFVGDSRARRFVDDGPFPFRSDRPARLVDVRRIGEVVLLRY 221 >gi|54303332|ref|YP_133325.1| putative riboflavin biosynthesis protein RibD [Photobacterium profundum SS9] gi|46916762|emb|CAG23525.1| Putative riboflavin biosynthesis protein RibD [Photobacterium profundum SS9] Length = 141 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 56/135 (41%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM AL+ S+ + + NP V C++VK+ ++ G T G HAEVQAL Sbjct: 3 EIFMLRALQISKSALPDCTPNPPVGCVLVKNDFIVSEGFTQAIGGNHAEVQALNSYSGST 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 TAYVTLEPCS+ GR+P CA +I GI+RVVV + DPD R SG+G++ L Q G+ + Sbjct: 63 ENITAYVTLEPCSYVGRTPACANTLINSGIKRVVVSMLDPDPRNSGKGVKILEQAGVQVE 122 Query: 127 DRMMESEGKIFLHAY 141 + + FL Y Sbjct: 123 IGLCNDQVIHFLAPY 137 >gi|307083979|ref|ZP_07493092.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis SUMu012] gi|308366346|gb|EFP55197.1| riboflavin biosynthesis protein RibD [Mycobacterium tuberculosis SUMu012] Length = 206 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 35/227 (15%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L +L +Q H+T K A S D A S I+ ++ +H RA +DAILVG Sbjct: 8 PLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLHRRRAIADAILVG 67 Query: 197 IGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 GTVLADDP LT RL L P+R+++ + +++++ Sbjct: 68 TGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVLNDEART----------- 115 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + + ++L L R T +L+EGG +A +F+ + ++ I+ Y Sbjct: 116 -------------MMIRTHEPMEVLRALSDR--TDVLLEGGPTLAGAFLRAGAINRILAY 160 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLCL 361 + I++G P + N R F S +E +G +L L Sbjct: 161 VAPILLGG---PVTAVDDVGVSNITNALRWQFDS---VEKVGPDLLL 201 >gi|72161280|ref|YP_288937.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] gi|71915012|gb|AAZ54914.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thermobifida fusca YX] Length = 239 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 9/199 (4%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + L A+S D I A + ++ ++V LRA DAILVG GT+ AD+P L Sbjct: 14 ERPRVILSCAMSVDGYIDDASPERLRLSTEADFDEVDELRASCDAILVGAGTIRADNPRL 73 Query: 208 TCRLNGLQEH-----SP---MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 R Q+ P +++L L +++ T ++ V ++ Sbjct: 74 LVRSPERQQRRLAAGHPAHLRKVVLSTSGDLDPAARVFTTGDAGCLLYVADHAAEAARHR 133 Query: 260 FRK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 F + ++ DL ++L L RGV LLVEGG AV +F+ L D + L + Sbjct: 134 FAGTAGVEVVAAGAPDLDRVLADLARRGVRRLLVEGGGAVHTAFLTRNLADELRLAIAPF 193 Query: 319 VIGEGGIPSPLEEGYLEKN 337 +G+ P + Sbjct: 194 FVGDARAPRFVHPAVFPHR 212 >gi|90578371|ref|ZP_01234182.1| putative riboflavin deaminase [Vibrio angustum S14] gi|90441457|gb|EAS66637.1| putative riboflavin deaminase [Vibrio angustum S14] Length = 146 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + FM AL S + NP V C++VK+G ++ G T G HAE AL Sbjct: 1 MNHDFQEQAFMIRALLLSHQSLPACRPNPPVGCVLVKEGEIVSEGFTQPPGQHHAEAMAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 TAYVTLEPCS GR+P CA ++E GI++VVV DPD R SG+G+ L Sbjct: 61 ANYDGSFTDVTAYVTLEPCSFVGRTPSCAHTLVELGIKKVVVATLDPDSRNSGKGIAVLK 120 Query: 121 QKGI-IVDRMMESEGKIFLHAY 141 + GI + + E+E F+ Y Sbjct: 121 EAGIEVEVGLCENEVLDFIEPY 142 >gi|238508822|ref|XP_002385594.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357] gi|220688486|gb|EED44839.1| riboflavin-specific deaminase [Aspergillus flavus NRRL3357] Length = 615 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 62/281 (22%), Positives = 114/281 (40%), Gaps = 39/281 (13%) Query: 111 VSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQDNMIG-- 165 +S G ++ GI+ R+ + K + + + L D + Sbjct: 313 ISHDGYEYQKGHGIVRIRVTDGNCKAPTNPTPPKTYQDSPLPPDTLLFPQFPLDFLEPYL 372 Query: 166 ---MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQ 215 ++G +K H LR++ DAIL+G+GTVLAD+P L CRL + Sbjct: 373 PKYDERRMQTVLSGPEAKLMTHYLRSRHDAILIGVGTVLADNPGLNCRLEGAGGFGGLGR 432 Query: 216 EHSPMRIILDPHFKLS--LDSKIIKTA----LLAPVIIVTEND--DPVLALAFRKKNINI 267 P +I+DP + + ++++TA AP ++V+ P + + + Sbjct: 433 MWQPRPVIIDPTGRWPVHPECRMLRTAVEGKGKAPWVVVSPGAQIHPQKLMMLKGYGGDF 492 Query: 268 IYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQI 318 + + + +L L GV S+++EGG V +N + +DSII+ + Sbjct: 493 LRIVEYNQNWRLRWEAILRALASEGVKSVMIEGGGTVLSELLNPEYTEFIDSIIVTVAPT 552 Query: 319 VIGEGGIPSPLEEGYLEK-------NFMCVRRDYFGSDVCL 352 +G GG+P + E+ N V+ G +V + Sbjct: 553 YLGSGGVPVSPDSKRDEQGKPNAALNPREVKWVPLGQNVIM 593 >gi|225847913|ref|YP_002728076.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644623|gb|ACN99673.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Sulfurihydrogenibium azorense Az-Fu1] Length = 221 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 56/222 (25%), Positives = 101/222 (45%), Gaps = 15/222 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGC----GSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 KR + + V+ D + +A + + +H RA+ D I+VG T+ Sbjct: 1 MKRPYTIIISEVTVDGKLTLAKGVSSKEIMKFMDEEANRYLHETRAKVDGIMVGAETIRT 60 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 D+P LT R ++ +P RII + LD+ ++K AP II+T P + Sbjct: 61 DNPYLTVRY--VKGKNPTRIIPTSTADIPLDANVLK--KDAPTIIITTEKAPEEKIKALS 116 Query: 263 KNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + + ++ + DL K++ L RG+ +L+VEGG+ + + +N LVD I + ++ Sbjct: 117 EKVEVVKIGDEKVDLIKMMDFLYNRGIRTLMVEGGSTLNWNLLNLGLVDEIRIIHMPFIV 176 Query: 321 GEGGIPSPLEEGYLEKNFMCVR---RDYF--GSDVCLEYIGK 357 G P+ + + +R R +F GS + E+ K Sbjct: 177 GGTDTPTLVGGEGFKNLDEVIRLKLRAHFMRGSHLITEWEVK 218 >gi|224373556|ref|YP_002607928.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH] gi|223589572|gb|ACM93308.1| riboflavin biosynthesis protein RibD [Nautilia profundicola AmH] Length = 325 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 75/330 (22%), Positives = 118/330 (35%), Gaps = 71/330 (21%) Query: 15 LRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA--- 70 + + + LT NP+V +IVK+ I GV G PHAEV AL EA A Sbjct: 14 INEAWKYQFLTYPNPAVGAAVIVKNQ--IFTGVHKKAGEPHAEVHALWEAYRAFHDAPEL 71 Query: 71 ---------------------TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 YVTLEPC+H G++P CA + E + V + DP Sbjct: 72 YTSKEIHEYLKKHHNGFFNDANVYVTLEPCAHEGKTPSCAYLLKELKPKSVSIGWPDPIK 131 Query: 110 RVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGC 169 G G++ L GI V + + H + + K+A++ + I Sbjct: 132 GHGG-GVEILKNSGIDVKILNDK---RCFHLIEPFIKWQNRFVFYKLALTMNGAI---TG 184 Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFK 229 G I+ S + VH +R + D +++G TV D P L R + +P +I + Sbjct: 185 GY--ISSDESLDWVHNIRDKIDLLVIGGNTVRIDRPTLDARR--VNGKAPDVLIYSKNDG 240 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 + D + I + L L Sbjct: 241 IERDIPLFNVKNRKVFI-----------------------------EDSLEKLEDYKF-- 269 Query: 290 LLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 +++EGG + + I +VD + S Sbjct: 270 IMIEGGERLYNE-IKH-MVDWKVFIVSPKF 297 >gi|329891051|ref|ZP_08269394.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] gi|328846352|gb|EGF95916.1| riboflavin biosynthesis protein ribD [Brevundimonas diminuta ATCC 11568] Length = 209 Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats. Identities = 63/158 (39%), Positives = 85/158 (53%), Gaps = 2/158 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M + DA FM A+ + +G T NP+V C++VKDG+V+ TA GG PHAE QA+ Sbjct: 1 MSGPAQDAVFMRRAIDLALSRMGETWPNPAVGCVLVKDGVVLAEAATAPGGRPHAEEQAV 60 Query: 61 EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 EAGE +GATAYVTLEPC CA F+ E G+ RVV+ DP SGRG + L Sbjct: 61 PEAGEAVKGATAYVTLEPCGARSSGRKSCAHFLAEAGVERVVIAALDPSPFASGRGTERL 120 Query: 120 SQKG-IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKI 156 G + ++ E + +L R R + + I Sbjct: 121 RHSGLTVETGLLCEEASVLSEGFLHRLETGRPMVRVSI 158 >gi|195952447|ref|YP_002120737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum sp. Y04AAS1] gi|195932059|gb|ACG56759.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Hydrogenobaculum sp. Y04AAS1] Length = 222 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 85/198 (42%), Gaps = 9/198 (4%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGT 199 + + ++ + ++ D + + S + + +H +RA+ DAI+VG T Sbjct: 1 MNNQDKPYVIIVSELTLDGKLTLYRGASSKELMTLMDEEAYRYLHEVRAKVDAIMVGCET 60 Query: 200 VLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + D+P LT R ++ +P+R+I + D+ ++ +I T+ Sbjct: 61 IRTDNPSLTVRY--VKGKNPIRVIPCSTANIPFDANVLSKD-AHTIIATTKRAPEEKIKK 117 Query: 260 FRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + I ++ D + LL L + + SL+VEGG+++ + V+ I + Sbjct: 118 LTEMGIEVLVTGDYLVDFELLLKKLREKDIKSLMVEGGSSINWELCKLKAVNEIRIIHLP 177 Query: 318 IVIGEGGIPSPLEEGYLE 335 +++G +P+ + + Sbjct: 178 VIVGGENVPTLVGGEGFK 195 >gi|169844953|ref|XP_001829197.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130] gi|116509937|gb|EAU92832.1| riboflavin-specific deaminase [Coprinopsis cinerea okayama7#130] Length = 239 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 55/190 (28%), Positives = 87/190 (45%), Gaps = 19/190 (10%) Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR-L 211 TL A S D I + ++ S H LR+ DAILVG T + D+P+L R L Sbjct: 16 TLTFAQSLDAKIAGQNGSQIALSCSESMQMTHRLRSLHDAILVGANTAINDNPQLNTRLL 75 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTENDDP---VLALAFRKKN 264 + +P IILD + +L + K+++ + P ++ +DDP Sbjct: 76 PVEDQKNPRPIILDTNLRLGPNCKLLQNYASGRGVQPWLLTPGSDDPDWLKRKSLLEDAG 135 Query: 265 INII------YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL-----VDSIIL 313 I+ D+ +L L G+ SL+VEGGAAV SF+ + L +D +I+ Sbjct: 136 ARIVIYAPSGGPRADDVPSILASLSTNGIRSLMVEGGAAVIQSFVTAHLKYGRIIDRVII 195 Query: 314 YRSQIVIGEG 323 + + +GEG Sbjct: 196 TVAPVFVGEG 205 >gi|212716410|ref|ZP_03324538.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM 16992] gi|212660663|gb|EEB21238.1| hypothetical protein BIFCAT_01333 [Bifidobacterium catenulatum DSM 16992] Length = 310 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 49/155 (31%), Positives = 72/155 (46%), Gaps = 4/155 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 ++M+ AL + G + NP V ++V+DG ++ G PHAE A + A G Sbjct: 27 RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 86 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL L + G+ Sbjct: 87 VDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLCILEENGV 146 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 +V +M +E + +I Sbjct: 147 EVVYDVMRAECDAINRHFFHYITTGMPYIVDGRKH 181 >gi|92113300|ref|YP_573228.1| bifunctional deaminase-reductase-like protein [Chromohalobacter salexigens DSM 3043] gi|91796390|gb|ABE58529.1| bifunctional deaminase-reductase-like protein [Chromohalobacter salexigens DSM 3043] Length = 283 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 5/212 (2%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + ++ S D I S +TG S+ +H LRA DA+L+G GT A Sbjct: 65 PCCATPGRFVIGQLGQSLDGRIATVSGASHYVTGEASRVHLHRLRALVDAVLIGAGTACA 124 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 DDP L+ R + H+P+R+ILDP+ ++ + + AP + +T + P AL Sbjct: 125 DDPRLSVR--HVSGHNPVRVILDPNGRVPATQGVFQND-EAPTLHITRHPLPRGALGAHV 181 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + L L RG+ +LVEGG F+ +D + + + ++IG Sbjct: 182 DTCVVEDAADLTPAALCRTLAARGLRRVLVEGGGQTVSRFLADGELDRLHVVVAPLLIGS 241 Query: 323 GGIPSPLEEGYLEKNFM--CVRRDYFGSDVCL 352 G L E + R G D Sbjct: 242 GRPAVSLAEIETLDTALRPPCRTFAMGDDTLF 273 >gi|126734556|ref|ZP_01750302.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. CCS2] gi|126715111|gb|EBA11976.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. CCS2] Length = 277 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 8/224 (3%) Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQS 190 E E + Q + +I S D I + ++G +H LRA + Sbjct: 31 EGEAQALALYGALAQPTATCQVFAQIGQSLDGRIATETGDAQDVSGEDGLAHLHRLRALA 90 Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE 250 DA+++G+ T L DDP+LT RL SP R+++DP +L D++++ ++I Sbjct: 91 DAVVIGVKTALHDDPQLTVRL--ADGTSPARVVIDPDGRLPNDARLLTDTSARRIVI--- 145 Query: 251 NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + I + + +L L RG S+L+EGG F+ + L++ Sbjct: 146 -QAVAKERPAGVEAITLSRASWIAPEDILGALQERGFKSILIEGGGITITQFLEADLLNR 204 Query: 311 IILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + L + ++IG G + + E GSDV Sbjct: 205 LHLAIAPLLIGSGPQSLTTAPIGTLAEARRPKTDVYNLGSDVLF 248 >gi|329848658|ref|ZP_08263686.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] gi|328843721|gb|EGF93290.1| riboflavin biosynthesis protein ribD [Asticcacaulis biprosthecum C19] Length = 299 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 56/148 (37%), Positives = 76/148 (51%), Gaps = 4/148 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 FM A+ +R G T NP+V C++VKD +V+G G T GG PHAE AL+ AG+ A Sbjct: 99 EPFMRQAIALAR--PGHTWPNPAVGCVLVKDDVVVGEGATGDGGRPHAEENALDMAGDVA 156 Query: 68 RGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-I 125 RGATAYVTLEPC C++ ++ G+ RVV DDP S G Q L GI + Sbjct: 157 RGATAYVTLEPCGKRSTGCASCSERLVAAGVARVVYACDDPSPFASHVGPQRLRDAGITV 216 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHIT 153 ++ E + + R + Sbjct: 217 EAGLLHDEAAHLIAPFAHFLKTGRPMVR 244 >gi|289643431|ref|ZP_06475551.1| bifunctional deaminase-reductase domain protein [Frankia symbiont of Datisca glomerata] gi|289506761|gb|EFD27740.1| bifunctional deaminase-reductase domain protein [Frankia symbiont of Datisca glomerata] Length = 224 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 12/222 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R ++ L +A+S D I AG + ++ ++V +RA DAILVG T+ D+P Sbjct: 1 MTQRPYVLLSVAMSVDGYIDDAGDRRLLLSNDADFDRVDEVRAGVDAILVGANTIRRDNP 60 Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R +E SP+++ L L ++ T + ++ Sbjct: 61 RLLVRSAARREERVACGLPESPVKVTLTGLGDLDRGARFFTTGQVEKIVYAACPAADRAR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + D DL +L L RG+ L+VEGG+A+ F+ + LVD I L + Sbjct: 121 ERLAGVASVVDAGDPIDLNVVLADLAARGIHRLMVEGGSAIHTRFLTAGLVDEIHLVIAP 180 Query: 318 IVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYI 355 +G+ P + +G + G V L Y+ Sbjct: 181 FFVGDPTAPRFVGDGVFPRHAGHRMELAEARPLGDVVLLRYL 222 >gi|237653124|ref|YP_002889438.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T] gi|237624371|gb|ACR01061.1| bifunctional deaminase-reductase domain protein [Thauera sp. MZ1T] Length = 290 Score = 143 bits (362), Expect = 3e-32, Method: Composition-based stats. Identities = 63/272 (23%), Positives = 105/272 (38%), Gaps = 7/272 (2%) Query: 86 PPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 P I V G ++ + R + ++ L +L Sbjct: 7 PDWGWACILQARDADWAGAGTISFTVEGVAIEIAPRGAWRCARALRADTAELLDLFLPWV 66 Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 ++ S D I A S I ++ +H LRA DA++VG+GTV ADDP Sbjct: 67 ARPGRLAIAQLGQSLDGRIATASGASHYINCLEARTHLHRLRALVDAVVVGVGTVNADDP 126 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP--VLALAFRKK 263 +LT R + +P+R++LDP + D+++ + V +V E+ P L R Sbjct: 127 QLTVR--HVAGRNPVRVVLDPRGRARADARLFQDGAAPTVHLVGEDLAPGTAAVLPGRVA 184 Query: 264 NINIIYCD-CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + + +L L G +LVEGG F+ + ++ + L + ++IG Sbjct: 185 RAGLPGAGSGFEPGAVLDWLARAGCRRVLVEGGGHTVSRFVQAGAIERLHLLVAPLLIGS 244 Query: 323 G--GIPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 G G+ P + E R GSD Sbjct: 245 GRAGLVLPPIDTLDEALRPVCRPFRCGSDSLF 276 >gi|255930967|ref|XP_002557040.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255] gi|211581659|emb|CAP79769.1| Pc12g01420 [Penicillium chrysogenum Wisconsin 54-1255] Length = 277 Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 33/236 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 TL A S D+ + ++ ++G SK H LR++ D I++G+GT +ADDP L C Sbjct: 36 PFTTLTFATSLDSSLALSPGARTVLSGPQSKAMTHYLRSRHDGIVIGVGTAVADDPGLNC 95 Query: 210 RLNGLQEH-------SPMRIILDPHFKL--SLDSKIIK----TALLAPVIIVT-ENDDPV 255 R++G+ + P +++DP + S DSK+ + AP II E + Sbjct: 96 RISGVGGYGRPGLDGQPRPVVIDPTARWEFSDDSKLFQLCREGRGRAPWIITAVEKPNAE 155 Query: 256 LALAFRKKNINIIYCDCRD---------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSR 306 + I +LL L G+ S+++EGG V S ++ + Sbjct: 156 KQALLERYGGRFIQVKMVRTHTGRHQIVWPELLVTLKSNGLRSVMIEGGGHVIKSLLSPQ 215 Query: 307 ---LVDSIILYRSQIVIGEGGIPSPLEEGYLE-------KNFMCVRRDYFGSDVCL 352 L+DS+I+ + +GEGG+ + + + V+ FG DV L Sbjct: 216 YMSLLDSVIVTIAPTWLGEGGVVVSPDRRFDDDGNAISAARLKNVKWYPFGEDVVL 271 >gi|126730233|ref|ZP_01746044.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] gi|126708966|gb|EBA08021.1| riboflavin biosynthesis protein RibD [Sagittula stellata E-37] Length = 89 Score = 143 bits (360), Expect = 6e-32, Method: Composition-based stats. Identities = 50/89 (56%), Positives = 63/89 (70%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 +++ DARFM+ AL R +G T NP+V CLIV+ G V+GRG T G PHAE QAL Sbjct: 1 MTASDARFMAQALALGRRGMGQTWPNPAVGCLIVRKGRVVGRGWTQPSGRPHAETQALAM 60 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQF 91 AG+ ARGAT YVTLEPC+H+G++PPC Sbjct: 61 AGDAARGATVYVTLEPCAHHGKTPPCTDA 89 >gi|154150451|ref|YP_001404069.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus Methanoregula boonei 6A8] gi|153999003|gb|ABS55426.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanoregula boonei 6A8] Length = 226 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 54/217 (24%), Positives = 96/217 (44%), Gaps = 15/217 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 H+ + ++ D + + S I ++ +H RA DAI+VG T+ D+ Sbjct: 8 PHVLMMSEITADGKLTLKKGASSKILMKYMAHETEILLHETRAAYDAIMVGANTIRIDNS 67 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT RL + SP+R+I + LD+ ++ +I V+E A R K + Sbjct: 68 FLTVRL--VPGKSPLRVIPCSMADIPLDANVL-GPDAPTLIAVSEKAPKDRVEAIRAKGV 124 Query: 266 NIIYC--DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 N+ D +L L+ IL + GV L++EGG + ++ +LVD I L ++G Sbjct: 125 NVAVAGKDHVELSLLMQILHDKYGVKKLMIEGGPTLNWHMLHDKLVDEIRLIHLPFIVGG 184 Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 PS + ++ +R + GS++ E+ Sbjct: 185 SDTPSLVGGMHINTEDEMIRLNLKKYYMCGSNLVSEF 221 >gi|46121465|ref|XP_385287.1| hypothetical protein FG05111.1 [Gibberella zeae PH-1] Length = 265 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 108/231 (46%), Gaps = 29/231 (12%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D+ + +A ++G SK H LR++ DAIL+G+ T+LAD P L C Sbjct: 30 PFVTLTFATSLDSSLSLAPGVRTRLSGPDSKAMTHYLRSRHDAILIGVSTLLADYPALNC 89 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDS--KIIKTAL----LAPVIIVTENDDPVLALAF--- 260 R++G P I++DPH + + K+++ A LAP ++ + V A + Sbjct: 90 RISGATS-QPRPIVIDPHLRWTPSHTDKVLEVARLGNGLAPFVLTGMDIQDVPAKSLEII 148 Query: 261 RKKNINIIYCDC---------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL---V 308 + + D + + L+ ++S++VEGG + +S ++SR + Sbjct: 149 EEHGGKYMQVPTTLGSNGRKRFDWRDVFDALLRENLSSVMVEGGGQIINSLLDSRFHNDI 208 Query: 309 DSIILYRSQIVIGEGGI---PSPLEEGYLEK----NFMCVRRDYFGSDVCL 352 DS+I+ + +G+GG+ P L++ V FG DV L Sbjct: 209 DSVIVTIAPTWLGQGGVLVSPDRLQDSTGTPIPVARLSNVSWHPFGEDVVL 259 >gi|332674278|gb|AEE71095.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 83] Length = 344 Score = 142 bits (358), Expect = 8e-32, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 133/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G L+ G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLKKARIDGVVCEGLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 YHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +IGE + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDTLLLHSHASMIGEAFNTIALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|225350924|ref|ZP_03741947.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158380|gb|EEG71622.1| hypothetical protein BIFPSEUDO_02499 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 191 Score = 142 bits (358), Expect = 9e-32, Method: Composition-based stats. Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 4/146 (2%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 ++M+ AL + G + NP V ++V+DG ++ G PHAE A + A G Sbjct: 40 RKYMTQALELAHKGAGWVNPNPLVGTVVVRDGEILAAGYHDRYRGPHAERMAFDYADEHG 99 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ Sbjct: 100 ADMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEENGV 159 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKR 149 +V +M +E + Sbjct: 160 EVVYDVMRAECDAINRHFFHYITTGM 185 >gi|85702872|ref|ZP_01033976.1| riboflavin specific deaminase, putative [Roseovarius sp. 217] gi|85671800|gb|EAQ26657.1| riboflavin specific deaminase, putative [Roseovarius sp. 217] Length = 237 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 14/208 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 H+ +I S D + + ++G +H +RA DA++VG+ T L DDP LT Sbjct: 14 PHVVAQIGQSLDGRVATVSGDAADVSGPDGLAHLHRMRALVDAVIVGVKTALQDDPRLTV 73 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL + +P R+++DP +L D+++ V+I T R + +I Sbjct: 74 RL--VAGQNPARVVIDPSGRLPNDARLFADDGARRVVIQTVEKS-------RPAGVEVIT 124 Query: 270 CDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--G 324 ++ L G+ LLVEGGA FI + L+ + + + ++IG G G Sbjct: 125 LPRSQWISPAAIVAALRKLGLNHLLVEGGAITIARFIEADLLSRLHVAVAPLLIGAGPQG 184 Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVCL 352 + + + + GSDV Sbjct: 185 LTTQPIAKLAQARRPETQVYGLGSDVVF 212 >gi|156031052|ref|XP_001584851.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980] gi|154700525|gb|EDO00264.1| hypothetical protein SS1G_14134 [Sclerotinia sclerotiorum 1980 UF-70] Length = 277 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 27/247 (10%) Query: 132 SEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSD 191 E + ++ + TL A S D+ I + PI+G SK H LR++ D Sbjct: 19 DEYLPTKSSIAAAHLQPLPYATLTYATSMDSQITILPGIGSPISGPDSKAMTHYLRSKHD 78 Query: 192 AILVGIGTVLADDPELTCRLNGLQEH--------SPMRIILDPHFKLSL--DSKII---- 237 AIL+G+ T +AD+P L CRL G+ + P +I+DP + +SKI Sbjct: 79 AILIGVNTAIADNPSLNCRLEGVGGYGGGDTLKGQPRPVIIDPKGRWEFGKESKIFGLVK 138 Query: 238 KTALLAPVIIVTENDDPVL--------ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTS 289 AP II + + + A + + +L L + S Sbjct: 139 DGKGKAPWIITAQQESKISSQKRNLLDAAGGKFLFVTTDETGKFSWCDILRALRDEDIES 198 Query: 290 LLVEGGAAVAHSFIN--SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK---NFMCVRRD 344 L++EGGA + + + L+ SII+ + + +G+GG+ E EK V+ Sbjct: 199 LMIEGGAGIINDMLARSHNLISSIIVTIAPVWLGKGGVVVTPERENREKEALRLKGVKWI 258 Query: 345 YFGSDVC 351 G DV Sbjct: 259 PLGQDVV 265 >gi|239621600|ref|ZP_04664631.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515475|gb|EEQ55342.1| riboflavin biosynthesis protein RibD [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 320 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 70/302 (23%), Positives = 111/302 (36%), Gaps = 45/302 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---G 64 +M+ AL + G + NP V ++V+D ++ G PHAE A + A G Sbjct: 37 REYMTQALELAHRGAGWVNPNPLVGTVVVRDSEILAAGYHDRYRGPHAERMAFDYADEHG 96 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT TLEPC H G P C I+ GI RVVV DP+ V+G+GL+ L + G+ Sbjct: 97 IDMHGATVIDTLEPCCHVGSQPACTDLILSHGITRVVVGSIDPNPIVAGKGLRILEETGV 156 Query: 125 -IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS-KNQ 182 +V +M +E + I + + + + Sbjct: 157 EVVYDVMRAECDAINRHFFHYITTGMP------------YIVDGRKHAEESDAEYAVRRR 204 Query: 183 VHLLRAQSDAILVGIGT-VLADDP----------ELTCRLNGLQEHSPMRIILDPHFKLS 231 L A A+L T A P R + +S Sbjct: 205 G--LYATYAAVLGTCPTGDRAGAPGDSNGTEGSAGSAARFPDWTDR----------LDVS 252 Query: 232 LDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLL 291 + PV V N+ +A + + +++I + + L L R + SL+ Sbjct: 253 DGA---FAYFDGPVQAVDANEA--VAGSHKPLHLDIRALADTEPDEWLRELGRRKIDSLV 307 Query: 292 VE 293 VE Sbjct: 308 VE 309 >gi|300114535|ref|YP_003761110.1| bifunctional deaminase-reductase domain-containing protein [Nitrosococcus watsonii C-113] gi|299540472|gb|ADJ28789.1| bifunctional deaminase-reductase domain protein [Nitrosococcus watsonii C-113] Length = 364 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 17/235 (7%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 L + ++ I+ +A + D I A S I+ + + H LRA DA+LVG Sbjct: 130 CLAGHHIASQKRLPWISTHLAQTLDGKIAAASGHSQWISNYADRKHAHRLRALHDAVLVG 189 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDP 254 GTV D+P LT R + +P R+ILD L K + ++ +++ Sbjct: 190 RGTVEKDNPRLTVR--EVPGENPKRVILDRQCHLLAGEKPYRIFQEPGHNWLLHSDSLHK 247 Query: 255 VLALAFRKKNINIIYC---------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 + + + + DLK +L + G+ S+ VEGG+ F+ Sbjct: 248 IETHYAIPRKVIPLGVRDQAGEKNGKLMDLKAILETIWSLGIRSVFVEGGSKTLSFFLAG 307 Query: 306 RLVDSIILYRSQIVIGEGGIPS---PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + + L+ + +++G G+PS P E + + ++ LE + + Sbjct: 308 GQTNLLHLHIAPLLLGS-GLPSFQLPPVARIQEGTYFHMTHFCLDKEILLECLPR 361 >gi|54025279|ref|YP_119521.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM 10152] gi|54016787|dbj|BAD58157.1| putative riboflavin-specific deaminase [Nocardia farcinica IFM 10152] Length = 228 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 89/226 (39%), Gaps = 14/226 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R ++ L +A S D + G + ++ ++V +RA+SDAILVG TV D+P Sbjct: 1 MTRPYVLLSVATSVDGYLDDTGPERLLLSNDADFDRVDQVRAESDAILVGAATVRTDNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK--TALLAPVIIVTENDDPVL 256 L R+ + P+++ + L +K T PV+ T Sbjct: 61 LIVKSEARQAARVAAGRSRHPLKVTVTATGDLDPAAKFWHHGTEDHRPVVYTTSAGHEKT 120 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 A + D LL L GRGV L+VEGG + +F++ RL D ++L Sbjct: 121 AQLLDGLADVVDLGPAIDFGALLDDLGGRGVRRLMVEGGGHIHTAFLSHRLADELLLAIG 180 Query: 317 QIVIGEGGIPSPL----EEGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 V+G+ P L G + G L Y+ K Sbjct: 181 PTVVGQANAPRFLHPAAFPGGPHRRMRLTDVTRLGDVAVLRYLPKE 226 >gi|27365734|ref|NP_761262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio vulnificus CMCP6] gi|27361883|gb|AAO10789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio vulnificus CMCP6] Length = 141 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 M AL S++ + NP V C++VK+G ++ G T G HAEVQALE + Sbjct: 3 EEHMLRALEVSKFALPNCLPNPPVGCVLVKEGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD R GRG+Q L Q G+ + Sbjct: 63 DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDPRNGGRGIQILEQAGVQVD 122 Query: 127 DRMMESEGKIFLHAY 141 + S+ FL Y Sbjct: 123 IGLCSSQVSAFLEPY 137 >gi|302381385|ref|YP_003817208.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Brevundimonas subvibrioides ATCC 15264] gi|302192013|gb|ADK99584.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Brevundimonas subvibrioides ATCC 15264] Length = 209 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 64/161 (39%), Positives = 85/161 (52%), Gaps = 2/161 (1%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 M ++ D M A+ + +G T NP+V C+IVKDG+V+ TA GG PHAE QA+ Sbjct: 1 MSDAAADQVHMRRAIDLALARMGETWPNPAVGCVIVKDGMVLSEAATAPGGRPHAEEQAV 60 Query: 61 EEAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 AG GATAYVTLEPC CAQF+ E GI RVVV DP SGRG + L Sbjct: 61 PAAGPGVAGATAYVTLEPCGARSSGRASCAQFLAEAGISRVVVAALDPSPFASGRGTERL 120 Query: 120 SQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 Q G+ + +M+ E + +L R R + + + Sbjct: 121 RQAGLRVETGLMKDEAGVLSEGFLHRLETGRPMVRISADGT 161 >gi|116328771|ref|YP_798491.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116121515|gb|ABJ79558.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 432 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59 ++ F + S G +S NP V+CLI V + ++ +G T+ G PHAE A Sbjct: 1 MTLLPEEFREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGWTSPTGGPHAERNAY 60 Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116 + G +VTLEPC+H G++PPC I+E + + DP+ V L Sbjct: 61 YEFVKNGFFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGL 120 Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + ++GI + + + + L +++R K+ + LK A+S++ V Sbjct: 121 ELCRRRGILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRF 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +G IS + +LRA+ DA+LVG GT+ D+P L R+ Sbjct: 181 SGNISNHLTSILRAKCDAVLVGPGTLFHDNPGLEFRIGE 219 >gi|294142852|ref|YP_003558830.1| riboflavin-specific deaminase [Shewanella violacea DSS12] gi|32562925|dbj|BAC79238.1| putative riboflavin deaminase [Shewanella violacea] gi|293329321|dbj|BAJ04052.1| riboflavin-specific deaminase, putative [Shewanella violacea DSS12] Length = 143 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 1/138 (0%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 FD +FM AL+ S+ + NP V C++V D VI G T G HAE++AL Sbjct: 2 DFDKKFMLRALKLSQTALPECQPNPPVGCVLVLDDQVIAEGYTQKIGGNHAEMEALNAYD 61 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 TAYVTLEPCS GR+P CA +++ GI+RVVV + DPD+R +G+G+Q L ++GI Sbjct: 62 GSMGLVTAYVTLEPCSFVGRTPACASTLVKSGIKRVVVAILDPDLRNNGKGIQTLEKEGI 121 Query: 125 -IVDRMMESEGKIFLHAY 141 + + E FL Y Sbjct: 122 KVDIGVASKEVSEFLSPY 139 >gi|86145701|ref|ZP_01064030.1| putative riboflavin deaminase [Vibrio sp. MED222] gi|85836400|gb|EAQ54529.1| putative riboflavin deaminase [Vibrio sp. MED222] Length = 145 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE----EA 63 ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL E Sbjct: 3 QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDCET 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G Sbjct: 63 DGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122 Query: 124 IIVDRMMESEG 134 + VD + E Sbjct: 123 VKVDVGLCQEQ 133 >gi|218676953|ref|YP_002395772.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32] gi|218325221|emb|CAV27160.1| Probable riboflavin biosynthesis protein [Vibrio splendidus LGP32] Length = 145 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALE----EA 63 ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL E Sbjct: 3 QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNGYDCET 62 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G Sbjct: 63 DGEMEGVTAYVTLEPCSFVGRTPACASTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122 Query: 124 IIVDRMMESEG 134 + VD + E Sbjct: 123 VKVDVGLCQEQ 133 >gi|330506465|ref|YP_004382893.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta concilii GP-6] gi|328927273|gb|AEB67075.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Methanosaeta concilii GP-6] Length = 220 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 58/174 (33%), Positives = 78/174 (44%), Gaps = 14/174 (8%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + + A+S D I + I+G +V LRA SDAI+VG+GTVLADDP Sbjct: 1 MNRPFVFINSAMSADGKISSRDRRQIRISGKEDLMRVDELRAASDAIMVGVGTVLADDPG 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R + Q P RI+ D + + ++KI+ + I P L Sbjct: 61 LRVKSRILREKRKDMGQLKEPFRIVADSNARTPANAKILGPGCM----IAVSYSAPEERL 116 Query: 259 AFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + II C DL L+ L RGV L+VEGGA + S I LVD Sbjct: 117 DRLRSGCEIIKCGTEMVDLPGLMEELYNRGVRRLMVEGGARLNWSLIELGLVDE 170 >gi|193884346|dbj|BAG54993.1| riboflavin biosynthesis protein ribG [Amphibacillus xylanus] Length = 198 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 87/205 (42%), Gaps = 18/205 (8%) Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS 218 + D + + ITG + V R ILVG T+L D+P L L Q Sbjct: 5 TLDGKLSLDSKR-TAITGKDTYQYVRKERNHYQGILVGSQTILTDNPFL---LGTDQTLH 60 Query: 219 PMRIILDPHFKL--SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 P+RIILD +L LD + +PV I TE K++ I +K Sbjct: 61 PIRIILDRRGRLFNKLDLNVF-INQASPVWIFTER----KVNIKLPKHVEAIVLKSATVK 115 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 ++ L R + SL VEGGA V SF+NS D +I Y + VIG G+P+ + + Sbjct: 116 SIIKELTRRNIHSLYVEGGAKVHDSFLNSGYWDQMITYIAPKVIGGNGVPAMSSTREVNQ 175 Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCL 361 +V +E I +L + Sbjct: 176 VIELT-------NVTVESIHDDLRI 193 >gi|89074668|ref|ZP_01161133.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp. SKA34] gi|89049606|gb|EAR55166.1| Putative riboflavin biosynthesis protein RibD [Photobacterium sp. SKA34] Length = 146 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/137 (39%), Positives = 73/137 (53%), Gaps = 1/137 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 + FM AL S + NP V C++VK+G ++ G T G HAE AL Sbjct: 6 QEQAFMIRALLLSHQSLPDCRPNPPVGCVLVKNGEIMSEGFTQPPGQYHAEAMALANYHG 65 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 TAYVTLEPCS GR+P CA +E GI++VVV DPD R SG+G+ L + G+ Sbjct: 66 SFTDVTAYVTLEPCSFVGRTPSCAHTFVELGIKKVVVATLDPDSRNSGKGIAILKEAGVE 125 Query: 125 IVDRMMESEGKIFLHAY 141 + + E+E F+ Y Sbjct: 126 VEVGLCENEVLDFIEPY 142 >gi|302895311|ref|XP_003046536.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI 77-13-4] gi|256727463|gb|EEU40823.1| hypothetical protein NECHADRAFT_34089 [Nectria haematococca mpVI 77-13-4] Length = 268 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 104/235 (44%), Gaps = 30/235 (12%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R +TL A S D+ + +A ++G SK H LR++ AIL+G+ T+LAD P Sbjct: 29 PSRPFVTLTFATSLDSSLSLAPGVRTRLSGPGSKAMTHYLRSRHAAILIGVSTLLADSPA 88 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDS--KIIKTALLAP-------VIIVTENDDPVLA 257 L CR+ G P II+DPH + D K+++ A L + +E+ A Sbjct: 89 LNCRIAGA-ARQPRPIIIDPHLRWVPDPTDKVLEVARLGTGLAPFVLTGVGSESLPAASA 147 Query: 258 LAFRKKNINIIYCDC----------RDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN--- 304 + I+ D + + L+ +TS++VEGG + +S +N Sbjct: 148 ALLEQHGGKYIHVPATSSGPGSRMRFDWRAVFDALLREHLTSVMVEGGGQIINSLLNPTF 207 Query: 305 SRLVDSIILYRSQIVIGEGGI---PSPLEE----GYLEKNFMCVRRDYFGSDVCL 352 ++DS+I+ + +G+GG+ P L++ V FG DV L Sbjct: 208 HDMIDSVIVTIAPTWLGQGGVVVSPDRLQDSAGVPVPAARLSEVSWHPFGEDVVL 262 >gi|224154958|ref|XP_002337544.1| predicted protein [Populus trichocarpa] gi|222839542|gb|EEE77879.1| predicted protein [Populus trichocarpa] Length = 436 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 54/207 (26%), Positives = 86/207 (41%), Gaps = 11/207 (5%) Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +K A S D + S IT ++ H RA++ IL GIGTV+ DDP L R + Sbjct: 1 MKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGTVVEDDPRLNVR-DV 59 Query: 214 LQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC- 272 P ++D + L +++++ A +I T + D A + +I Sbjct: 60 ATPRQPRIAVVDSRLDMPLTARVLQ--APAGCLIYTSSRDASKTSALQDLGTTVIPMPNA 117 Query: 273 ---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP--- 326 DL +L L RG L VE G + S + LVD ++LY + ++G GG+ Sbjct: 118 HGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPKLLGTGGMGIAS 177 Query: 327 -SPLEEGYLEKNFMCVRRDYFGSDVCL 352 PL+ G D+ + Sbjct: 178 FGPLDALSEAIALALHDVQRIGPDLRV 204 >gi|269126070|ref|YP_003299440.1| bifunctional deaminase-reductase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268311028|gb|ACY97402.1| bifunctional deaminase-reductase domain protein [Thermomonospora curvata DSM 43183] Length = 228 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D I A + ++ ++V +RA DAILVG T+ DDP Sbjct: 1 MSDRPYVLLSCAMSVDGYIDDARPERLRLSSPADFDRVDGVRATCDAILVGAETIRRDDP 60 Query: 206 ELTCRLNGLQEHSPMR--------IILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 +L + QE R + L L S+ T ++ P LA Sbjct: 61 KLLIKSPVRQERRAARGLPRQLTKVTLTLRGDLDPTSRFFTTGDCPKLVYAGSRAVPALA 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 I D D++ +L L RGV L+VEGG + F+ L D + L + Sbjct: 121 ERLEGVAEVIDGGDPVDVRLVLADLARRGVRRLMVEGGGGMHTLFLTEGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKNLC 360 IG+ P + G ++ G L Y+ K Sbjct: 181 FFIGDPSAPRFVHPGLFPQDPAHPMRLAEVTRIGDLALLRYLLKRSR 227 >gi|315040531|ref|XP_003169643.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893] gi|311346333|gb|EFR05536.1| hypothetical protein MGYG_08552 [Arthroderma gypseum CBS 118893] Length = 645 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 31/251 (12%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + +A K H+TL A S D I ++G +K H LR++ DA Sbjct: 366 ECQSNGNANPNSGEAKFPHVTLTYAQSMDGKISTKPGVQTVLSGPETKTMTHYLRSRHDA 425 Query: 193 ILVGIGTVLADDPELTCRLNGLQE-------HSPMRIILDPHFKL--SLDSKIIKTALL- 242 I++G+GT +ADDP L CRL G P +I+DP + S DS+++ TA Sbjct: 426 IIIGLGTAVADDPGLNCRLEGAGGFGGFGTMWQPRPVIIDPTGRWSASADSRLLMTAAEG 485 Query: 243 ---APVIIVTENDDPVLALAFRKKNINIIYCDCRD--------LKKLLTILVGRGVTSLL 291 AP +IV+ + + K Y R+ + + L +G+ S++ Sbjct: 486 KGKAPWVIVSPGAELLPDKLLLLKRHGGDYLRIREYNPHWRLRWEAIFGALANQGIRSVM 545 Query: 292 VEGGAAVAHSFINS---RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF-------MCV 341 +EGG V +N VDS+I+ + IG G+ + E + Sbjct: 546 IEGGGIVLSELLNPEYVDFVDSVIVTVAPTYIGRNGVSVSPDSKQDEHGSPINALTPHNI 605 Query: 342 RRDYFGSDVCL 352 + G DV + Sbjct: 606 KWQPLGKDVIM 616 >gi|145346176|ref|XP_001417569.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144577796|gb|ABO95862.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 147 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 64/139 (46%), Positives = 83/139 (59%), Gaps = 4/139 (2%) Query: 11 MSAALRFSRWHVGLTS-TNPSVACLIV--KDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 M AL + + NP V C++V ++ +V+G G G PHAEV AL AGE A Sbjct: 1 MRRALEVAATATTAETFPNPRVGCVVVDAREDVVVGEGYHPKAGEPHAEVFALRAAGELA 60 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 RGATAYVTLEPC+HYGR+PPCA+ +++ G+ RVVV DPD RVSG G+Q L GI V Sbjct: 61 RGATAYVTLEPCNHYGRTPPCARALVDAGVARVVVGFIDPDPRVSGGGIQTLLDAGIEVA 120 Query: 128 RMMESE-GKIFLHAYLTRQ 145 E + ++ RQ Sbjct: 121 VGCEEALCREINADFIARQ 139 >gi|297200713|ref|ZP_06918110.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC 29083] gi|197712280|gb|EDY56314.1| bifunctional enzyme deaminase/reductase [Streptomyces sviceus ATCC 29083] Length = 375 Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ + P+++ + +L D+ T ++ T + A Sbjct: 61 LLVNSETRRAARVAAGKPPYPLKVTVSGSGELDPDANFWHTGGDK--LVFTTDQGAQRAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + D ++LL L RGV L+VEGG + + L D + L + Sbjct: 119 ALGLAADVVSLGPELDWRRLLEHLHEERGVERLMVEGGGRIHTQLLQQGLADEVQLVLAP 178 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 + +G P G Y V V + Y Sbjct: 179 LFVGSPEAPRLFGPGAYQSGRLRLVETRRIEDVVLMRYEP 218 Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 9/138 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEE- 62 D +++ A + + T SV ++V DG + RG + G P HAE AL + Sbjct: 231 DHHWLALACELATR-CPPSQTAFSVGAVVVAADGTELARGHSREGDDPVVHAEEAALAKI 289 Query: 63 --AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-W 118 A AT Y +LEPC+H P PCA+ I++ G+RRVV +PD V+G Sbjct: 290 DPADPRLATATVYTSLEPCTHRASRPAPCARLILDAGVRRVVTAWREPDTFVAGADGTGT 349 Query: 119 LSQKGIIVDRMMESEGKI 136 L+ G+ V + E E + Sbjct: 350 LTAAGVDVVVLGEHEERA 367 >gi|148975779|ref|ZP_01812610.1| Probable riboflavin biosynthesis protein RibD [Vibrionales bacterium SWAT-3] gi|145964852|gb|EDK30104.1| Probable riboflavin biosynthesis protein RibD [Vibrionales bacterium SWAT-3] Length = 141 Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats. Identities = 51/127 (40%), Positives = 72/127 (56%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 ++M AL+ S + NP V C++VK+ V+ G T G HAEV+AL + Sbjct: 3 QQYMLQALQASHQALPDCQPNPPVGCILVKNDKVVSVGYTQKVGGNHAEVEALNHYDGDM 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G+ VD Sbjct: 63 EGVTAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHGVKVD 122 Query: 128 RMMESEG 134 + Sbjct: 123 VGLCQAQ 129 >gi|317179684|dbj|BAJ57472.1| riboflavin biosynthesis protein [Helicobacter pylori F30] Length = 344 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 134/362 (37%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKVLRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ +G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q+ +P Sbjct: 191 HHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQDKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + +SK+ AP +V +CD +DL Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNA------------------FCDPKDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|76801978|ref|YP_326986.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas pharaonis DSM 2160] gi|76557843|emb|CAI49427.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Natronomonas pharaonis DSM 2160] Length = 219 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 88/207 (42%), Gaps = 12/207 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +T+ A+S D + + I+G +++ LRA DA+LVG+GTVLAD+P L Sbjct: 1 MDVTVNAAMSADGKLSSRRREQIAISGDADFERMYRLRAAVDAVLVGVGTVLADNPSLRS 60 Query: 210 RLN-------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV-LALAFR 261 G P R++ D + D+ I+ A ++T P A R Sbjct: 61 HDEAHRAEVYGPDADPPARVVADSACRTPPDADIL--AGEPDTYVLTSGAAPEDRRAALR 118 Query: 262 KKNINIIYCDC--RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + +I D L L RG+ L+VEGG + S + LVDS+ +Y +V Sbjct: 119 EAGAELIVTDGDRVSLSTAFAELAARGIDRLMVEGGGELIFSLFEAGLVDSLSVYIGDLV 178 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYF 346 IG P+ + +F + D Sbjct: 179 IGGRDAPTLADGEGFVADFPELELDEV 205 >gi|15898882|ref|NP_343487.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus solfataricus P2] gi|2493564|sp|P95872|RIB7_SULSO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|1707704|emb|CAA69508.1| riboflavin biosynthesis protein ribG [Sulfolobus solfataricus P2] gi|13815385|gb|AAK42277.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase (ribD) [Sulfolobus solfataricus P2] gi|261603290|gb|ACX92893.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus solfataricus 98/2] Length = 213 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 11/210 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + VS D + ++ K + H +R++ DA++VG TV D+P LT Sbjct: 5 PYVIIFSTVSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 63 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 + G +P+R+++ F L KI T +I T N + F +K + + Sbjct: 64 KY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TVIYTSNYESEKVEEFIRKGVIVRK 120 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D V L+VEGG + FI L D I + S + G G+ Sbjct: 121 FLHLDDLLEDLY-DNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFG-NGVSFTQ 178 Query: 330 EEGYLEKN-----FMCVRRDYFGSDVCLEY 354 EG++ ++ + + G++V L Y Sbjct: 179 GEGFIGEDSPRLELIDAKICECGNEVHLTY 208 >gi|284173977|ref|ZP_06387946.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus solfataricus 98/2] Length = 211 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 11/210 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + VS D + ++ K + H +R++ DA++VG TV D+P LT Sbjct: 3 PYVIIFSTVSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 + G +P+R+++ F L KI T +I T N + F +K + + Sbjct: 62 KY-GKNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TVIYTSNYESEKVEEFIRKGVIVRK 118 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D V L+VEGG + FI L D I + S + G G+ Sbjct: 119 FLHLDDLLEDLY-DNFNVRRLMVEGGGHLIWWFIKDNLYDEIRITISPRIFG-NGVSFTQ 176 Query: 330 EEGYLEKN-----FMCVRRDYFGSDVCLEY 354 EG++ ++ + + G++V L Y Sbjct: 177 GEGFIGEDSPRLELIDAKICECGNEVHLTY 206 >gi|120554594|ref|YP_958945.1| deaminase-reductase domain-containing protein [Marinobacter aquaeolei VT8] gi|120324443|gb|ABM18758.1| bifunctional deaminase-reductase domain protein [Marinobacter aquaeolei VT8] Length = 288 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 107/272 (39%), Gaps = 20/272 (7%) Query: 91 FIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 I I V D P V+++G+ + + ++ + L L + V S Sbjct: 18 AINRSNITLPVPGSDQPAVKINGKSWEL------VQPASEQARNLLSLFLPLCQPVTTNS 71 Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + ++ S D I S I G +H +RA DA++VG GT D+P LT R Sbjct: 72 RVIGQLGQSLDGRIATVTGCSRFINGDDGITHLHRIRALCDAVVVGAGTASTDNPRLTVR 131 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 +P+R+++D ++ + T AP + + D + + C Sbjct: 132 RT--SGRNPVRVVIDRRQRVPASHHLF-TDGDAPTLHLIAGDYQPGPKTLDPTGVTTVPC 188 Query: 271 -------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++L +L G+ + +EGG SF+ + L+D + + + ++IG Sbjct: 189 LGSAENEAPASPERILQVLQDFGLRKIFIEGGGVTVSSFLKAGLLDRLHVMVAPMIIGS- 247 Query: 324 GIPS---PLEEGYLEKNFMCVRRDYFGSDVCL 352 G P+ P + E + GSD+ Sbjct: 248 GRPAFSLPEIDQLDEALRPKAQLVNLGSDMLF 279 >gi|317181190|dbj|BAJ58976.1| riboflavin biosynthesis protein [Helicobacter pylori F32] Length = 344 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + +SK+ AP +V DP +DL Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +IGE + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFNTLALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|219852683|ref|YP_002467115.1| bifunctional deaminase-reductase domain protein [Methanosphaerula palustris E1-9c] gi|219546942|gb|ACL17392.1| bifunctional deaminase-reductase domain protein [Methanosphaerula palustris E1-9c] Length = 234 Score = 140 bits (354), Expect = 3e-31, Method: Composition-based stats. Identities = 50/217 (23%), Positives = 91/217 (41%), Gaps = 15/217 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 H+ L ++ D + + S I ++ +H RA DAI+VG T+ D+ Sbjct: 8 PHVLLMSEITADGKLTLKKGSSSKILMKYMAPETEVLLHQTRAACDAIMVGSNTIRIDNS 67 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 LT R+ + SP+R+I + LD+ ++ ++ V + A R K Sbjct: 68 FLTVRI--VPGESPLRVIPSSQADIPLDANVL-GPDARTLVAVATSAPEEKIAAIRAKGA 124 Query: 266 NIIYC--DCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 ++ D DL L+ +L V L++EGG + + +LVD I L ++G Sbjct: 125 MVVVAGDDHVDLSTLMHLLWRDFHVRRLMIEGGPTLNWHMLIHQLVDEIRLIHLPFIVGG 184 Query: 323 GGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 PS + +++ +R G+++ EY Sbjct: 185 ADTPSLVGGMHIDSEDQMIRLQLKNHYLCGTNLVTEY 221 >gi|331695256|ref|YP_004331495.1| bifunctional deaminase-reductase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949945|gb|AEA23642.1| bifunctional deaminase-reductase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 231 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 59/231 (25%), Positives = 96/231 (41%), Gaps = 12/231 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R H+ L AVS D I + ++ ++V +RA DAILVG T+ DDP Sbjct: 1 MTGRPHVLLSAAVSLDGCIDDVSRRRLILSNDADLDRVDEVRASVDAILVGANTIRTDDP 60 Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + SP+++ L K+S DS+ + T V+ + + Sbjct: 61 RLLVRSAARRAARVATGRAPSPVKVTLTRTGKISPDSRFLTTGDGDRVVYAPTSAVADVR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + D D+ LL L RGV L+VEGG+ V F++S LVD + + + Sbjct: 121 ERVGAAATVVGAGDPLDVTVLLDDLHRRGVRRLMVEGGSEVHTLFMSSGLVDELHVVFAP 180 Query: 318 IVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 ++G+ G P + + V G V L Y+ + + + Sbjct: 181 FLVGQPGAPRFVNAAVFPQGPGNRMRLVEARPIGDVVLLRYVPVDAGSRAI 231 >gi|229526073|ref|ZP_04415477.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae bv. albensis VL426] gi|229336231|gb|EEO01249.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio cholerae bv. albensis VL426] Length = 141 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 59/135 (43%), Positives = 78/135 (57%), Gaps = 1/135 (0%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 M AL S++ + NP V C++VK G ++ G T G HAEVQALE + Sbjct: 3 EEHMLRALEVSKFALPNCLPNPPVGCVLVKGGSIVAEGFTQKIGGNHAEVQALEAYSGDM 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IV 126 TAYVTLEPCS GR+P CA +++ GI+ VVV + DPD+R SGRG+Q L Q GI + Sbjct: 63 DSVTAYVTLEPCSFIGRTPACAATLVKSGIKHVVVSILDPDLRNSGRGIQILEQAGIQVD 122 Query: 127 DRMMESEGKIFLHAY 141 + S+ FL Y Sbjct: 123 IGLCSSQVSAFLDPY 137 >gi|84387508|ref|ZP_00990526.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus 12B01] gi|84377556|gb|EAP94421.1| Probable riboflavin biosynthesis protein RibD [Vibrio splendidus 12B01] Length = 145 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 54/139 (38%), Positives = 78/139 (56%), Gaps = 5/139 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE-- 65 ++M AL SR + NP V C++VK+ V+ G T G HAEV+AL + Sbjct: 3 QQYMLQALEASRQALPDCQPNPPVGCVLVKNDKVVSVGYTQKVGGNHAEVEALNSYDDGL 62 Query: 66 --EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 E G TAYVTLEPCS GR+P CA +++ G++ VVV + DPD R +GRG+ L G Sbjct: 63 DGEMEGITAYVTLEPCSFVGRTPACANTLVKAGVKHVVVAMLDPDPRNNGRGVAILESHG 122 Query: 124 I-IVDRMMESEGKIFLHAY 141 + + + +++ FL Y Sbjct: 123 VKVDVGLCQAQVSAFLTPY 141 >gi|86739889|ref|YP_480289.1| bifunctional deaminase-reductase-like protein [Frankia sp. CcI3] gi|86566751|gb|ABD10560.1| bifunctional deaminase-reductase-like [Frankia sp. CcI3] Length = 283 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 93/250 (37%), Gaps = 42/250 (16%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ A+S D I + + ++ ++V +RA DAILVG TV D+P L Sbjct: 31 PYVICSCAMSLDGHIDDSSAERMILSSAADLDRVDEVRAGCDAILVGAATVRRDNPRLAV 90 Query: 210 R--------LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVI---------IVTEND 252 R + +P++++L L +++ + +I I Sbjct: 91 RAQHRRVAREAAGRPPTPIKVVLSGGGDLDPSARLFTADPVETIIYRRAGSSLAIAEPTS 150 Query: 253 DPV------------------LALAFRKKNINIIYCDCR---DLKKLLTILVGRGVTSLL 291 P A A R + ++ R ++ +LT L RGV LL Sbjct: 151 SPEPTSSPEPSTPQSAPAAIRTAPATRAARVILVELPGRPRVEVAAILTDLARRGVRRLL 210 Query: 292 VEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFG 347 VEGG ++ +F+ + LVD + L + +GE P+ + G + Sbjct: 211 VEGGTSLHTAFLTAGLVDELHLTVAPFFVGERDAPTFVGPGVFPNDVHSPLRLAEVRQLD 270 Query: 348 SDVCLEYIGK 357 V L Y+ Sbjct: 271 DVVFLRYLAP 280 >gi|299142094|ref|ZP_07035228.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298576556|gb|EFI48428.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 122 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 46/119 (38%), Positives = 58/119 (48%), Gaps = 4/119 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 4 EYYMKRCLQLAENGRQNAKPNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63 Query: 68 R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+Q + Sbjct: 64 EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGIQRMRDA 122 >gi|15646114|ref|NP_208296.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695] gi|2314679|gb|AAD08541.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori 26695] Length = 344 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 79/364 (21%), Positives = 133/364 (36%), Gaps = 77/364 (21%) Query: 12 SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68 L + H L NPSVAC ++ K+ ++ PHAEV A + A + R Sbjct: 9 EMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPS 68 Query: 69 ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 +TLEPC+ YG++P C++ + +RVV Sbjct: 69 LKNDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128 Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + ++ + + G LQ + II + + L + Q + + L + ++ Sbjct: 129 IATEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA D ++V T+ D+P L R Q + Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL + +SK+ AP +V DP +DL Sbjct: 242 PNIAILSKR-SIDPNSKVFS----APNRLVNTFHDP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D+++L+ +IGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMIGEAFKALALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|229589688|ref|YP_002871807.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens SBW25] gi|229361554|emb|CAY48431.1| putative riboflavin biosynthesis deaminase [Pseudomonas fluorescens SBW25] Length = 156 Score = 140 bits (352), Expect = 5e-31, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 1/142 (0%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 MP + + FM AL R + NP V C++V+D +VI +G T G HAE AL Sbjct: 1 MPNTLSNTDFMQLALAQGRLALPECLPNPPVGCVLVQDNMVISQGYTQAPGFHHAEAMAL 60 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 E TA+VTLEPCS +GR+P CA +I G+ V V + DPD R SG G++ L Sbjct: 61 SRLTNECSAVTAFVTLEPCSFHGRTPSCALALINSGVETVFVGLLDPDPRNSGAGIRMLR 120 Query: 121 QKGI-IVDRMMESEGKIFLHAY 141 GI ++ ++ E L + Sbjct: 121 DAGITVIVGLLAEETAEDLADF 142 >gi|82791814|gb|ABB90836.1| putative bifunctional enzyme deaminase/reductase [Streptomyces davawensis] Length = 375 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 86/219 (39%), Gaps = 11/219 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++ ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPLPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ P+++ + L +K T V+ T+ Sbjct: 61 LLVNSPERRAARVAAGHPEYPLKVTVSGSGDLDPAAKFWHTGGE-KVVYTTDKGARTARA 119 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 A ++ + D D ++LLT L RGV L+VEGG + + L D + L + + Sbjct: 120 AGLAADVVALGAD-LDWRRLLTDLHARGVHRLMVEGGGTIHTQLLQEGLADELQLVLAPL 178 Query: 319 VIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 +G+ P G Y V V + Y Sbjct: 179 FVGDPSAPRLFGPGAYQAGRLRLVESRRIQDVVLMRYEP 217 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 9/141 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60 ++ D ++ A + + T SV ++V DG + RG + G P HAE AL Sbjct: 227 AAADHHWLRLACELAEL-CPPSETAFSVGAVVVAADGTELARGHSREGTDPVVHAEEAAL 285 Query: 61 EEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVR-VSGRG 115 + AT Y +LEPC+H P PCA+ I++ G+RRVV +PD V+ G Sbjct: 286 AKIDPEDPRLPSATVYSSLEPCAHRSSRPAPCARLILDAGVRRVVTAWREPDTFVVAADG 345 Query: 116 LQWLSQKGIIVDRMMESEGKI 136 L+ G+ V + E + Sbjct: 346 TGLLTAAGVDVLELPEYADRA 366 >gi|56459161|ref|YP_154442.1| riboflavin-specific deaminase [Idiomarina loihiensis L2TR] gi|56178171|gb|AAV80893.1| Riboflavin-specific deaminase [Idiomarina loihiensis L2TR] Length = 141 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 52/126 (41%), Positives = 76/126 (60%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +FM AL S+ + NP V C++VKDG VI +G T G HAEV+AL + Sbjct: 3 EKFMLEALNISKQALPHCEPNPPVGCVLVKDGEVISKGFTQAIGGSHAEVEALNAHSGDL 62 Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVD 127 G TAYVTLEPCS GR+ CA ++ GI+ V++ + DPD+R +G+G + L+ G+ V+ Sbjct: 63 SGVTAYVTLEPCSFVGRTAACASTLLASGIKHVIIAMLDPDIRNNGKGAEILTAGGVKVE 122 Query: 128 RMMESE 133 + +E Sbjct: 123 VGLCAE 128 >gi|126275980|ref|XP_001387170.1| predicted protein [Scheffersomyces stipitis CBS 6054] gi|126213039|gb|EAZ63147.1| predicted protein [Pichia stipitis CBS 6054] Length = 265 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 18/199 (9%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 Q +KR +TL A S D+ I I+ +K H LR++ DAI+V IGTV ADD Sbjct: 37 QHQKRPFVTLTYAQSLDSRIAAKKGTQTKISHLETKTMTHYLRSKHDAIMVAIGTVQADD 96 Query: 205 PELTCRL-NGLQEHSPMRIILDPHFKL-----SLDSKIIKTALLAPVIIVTENDDP--VL 256 P+L CR +HSP +ILDPH K L + AP II+ EN P Sbjct: 97 PKLNCRYREDGNDHSPRPVILDPHGKWNYSESQLRAICDNKQGKAPYIIIEENVKPKQED 156 Query: 257 ALAFRKKNINIIYCD-----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-----NSR 306 +++N IY + +L L GV S+++EGGA V + + Sbjct: 157 IEILQEQNGLFIYLPLSTDHSANWDLILQKLHDLGVESIMIEGGAMVINELLDFHRTQHD 216 Query: 307 LVDSIILYRSQIVIGEGGI 325 L+DS+I+ I +G G+ Sbjct: 217 LIDSLIITVGPIFLGSQGV 235 >gi|88602100|ref|YP_502278.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] gi|88187562|gb|ABD40559.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Methanospirillum hungatei JF-1] Length = 226 Score = 139 bits (351), Expect = 6e-31, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 96/225 (42%), Gaps = 15/225 (6%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIG 198 R ++TL V+ D + + S + ++ +H +RA SDAI+VG Sbjct: 1 MSDHINRPYVTLVSEVTIDGKLTVTRGASSKLLMQFMSHEAEVLLHQIRADSDAIMVGAN 60 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-- 256 T+ D+ LT R ++ +P+R+I +S D+ ++ +I V+ D Sbjct: 61 TIRIDNSFLTVR--HVEGKNPIRVIPSSKADISPDANVLS-PDAPTIIAVSARADKETCT 117 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 LA + I I + DL L+ +L + V SL++EGG+ + + L+D ++L Sbjct: 118 ILAEKGAYIEICGDEFVDLPILMRLLFEKYSVQSLMIEGGSTLNGNMFQKGLIDELLLIH 177 Query: 316 SQIVIGEGGIPSPLEEGYLEKNFMCVRRDYF-----GSDVCLEYI 355 + G PS + + ++ D G ++ ++ Sbjct: 178 LPFIAGGEDTPSLVTGLHPRDVSDLLKLDLITHFMAGENLITKWR 222 >gi|329938811|ref|ZP_08288207.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045] gi|329302302|gb|EGG46194.1| riboflavin/cytosine deaminase [Streptomyces griseoaurantiacus M045] Length = 379 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 11/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 H+ L AVS D + G + ++G ++V +RA+SDAIL+G GT+ D+P Sbjct: 1 MPHPHVLLSAAVSLDGFLDDTGPDRLLLSGPEDFDRVDQVRAESDAILIGAGTLRTDNPR 60 Query: 207 LTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L + P+++ + L ++ T A + TE P L Sbjct: 61 LLVNSPERRAKRVAAGLPEYPLKVTVSASGDLDPAARFWHTGG-AKAVYTTEEAAPRLRA 119 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + +++L L + V L+VEGG V + L D + L + Sbjct: 120 ALPPDVDVVAPGAELRWREVLAHLGEEKDVRRLMVEGGGRVHTELLRQGLADELQLVVAP 179 Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIG 356 +++GE P Y + G V + Y+ Sbjct: 180 LLVGEADAPRMFGTAAYPPGRMRLLETRAVGDVVLMRYVP 219 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 45/127 (35%), Positives = 63/127 (49%), Gaps = 8/127 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60 ++ D R++ A + + T SV ++V DG + RG + GG P HAE AL Sbjct: 229 TAADRRWLGLACDLAER-CPPSETAFSVGAVVVAADGTELARGFSREGGDPAVHAEEAAL 287 Query: 61 EE-AGEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 + A +AR GAT Y +LEPC+ P PCA+ I+ G RRVV +PD V G Sbjct: 288 AKVAPGDARLAGATVYSSLEPCARRASRPVPCARLILAAGARRVVTAWREPDTFVPGADG 347 Query: 117 QWLSQKG 123 + G Sbjct: 348 TGVLTAG 354 >gi|149202756|ref|ZP_01879728.1| bifunctional deaminase-reductase-like protein [Roseovarius sp. TM1035] gi|149144038|gb|EDM32072.1| bifunctional deaminase-reductase-like protein [Roseovarius sp. TM1035] Length = 272 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 14/228 (6%) Query: 133 EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDA 192 E + +I S D + + ++G +H +RA DA Sbjct: 33 ERAAMALYGSMMAAPGTPQVVAQIGQSLDGRVATVTGDAADVSGPDGLAHLHRMRALVDA 92 Query: 193 ILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 ++VG+ T L D+P LT RL + +P R+++DP +L D+++ ++I Sbjct: 93 VIVGVKTALHDNPRLTVRL--VSGQNPARVVIDPSGRLPNDARLFAEDGTRRIVI----- 145 Query: 253 DPVLALAFRKKNINIIYCDCRDL---KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 R + +I D +++ L G+ L+VEGGA FI + L+ Sbjct: 146 --QEVDKPRPAGVEVIQLPRSDWISPPAIVSALRKVGLHHLMVEGGAITIARFIEADLLA 203 Query: 310 SIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 + + + ++IG G G+ + + + G+DV + + Sbjct: 204 RLHVAVAPLLIGAGPQGLTTRPVARLAQARRPETQVYGLGTDVLFDCV 251 >gi|289807868|ref|ZP_06538497.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 111 Score = 139 bits (350), Expect = 8e-31, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 67/108 (62%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL AG Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGA 61 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 +A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + P+ Sbjct: 62 KAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMHGPEPTGRP 109 >gi|315505529|ref|YP_004084416.1| bifunctional deaminase-reductase domain protein [Micromonospora sp. L5] gi|315412148|gb|ADU10265.1| bifunctional deaminase-reductase domain protein [Micromonospora sp. L5] Length = 229 Score = 138 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP Sbjct: 1 MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60 Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + SP+++ + L ++ ++ Sbjct: 61 RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + D + ++ L GRGV L+VEGG +V F+ + L D + L + Sbjct: 121 EQVGGVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360 +G+G P + +G+ + V G V Y + C Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227 >gi|302868074|ref|YP_003836711.1| bifunctional deaminase-reductase domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302570933|gb|ADL47135.1| bifunctional deaminase-reductase domain protein [Micromonospora aurantiaca ATCC 27029] Length = 229 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 50/227 (22%), Positives = 87/227 (38%), Gaps = 12/227 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D I A + ++ ++V RA DAI+VG TV DDP Sbjct: 1 MTTRPYVLLSCAMSIDGYIDDATTERLLLSNDDDLDRVDATRAGCDAIMVGAATVRRDDP 60 Query: 206 ELTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + SP+++ + L ++ ++ Sbjct: 61 RLLVRSERRRAERVARGLPPSPVKVTVTGSGDLDPQARFFTAGDGLKLVYCPSGVVDKAR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + D + ++ L GRGV L+VEGG +V F+ + L D + L + Sbjct: 121 EQVGAVSTVVDAGDPATPEAVVADLAGRGVARLMVEGGGSVHRQFLTAGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360 +G+G P + +G+ + V G V Y + C Sbjct: 181 FFVGDGRAPRFVGDGHFPWHPGRRARVVEVRQIGDVVLTRYALSDRC 227 >gi|116331682|ref|YP_801400.1| pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116125371|gb|ABJ76642.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 432 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 8/219 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLI--VKDGIVIGRGVTAYGGCPHAEVQA- 59 ++ F + S G +S NP V+CLI V + ++ +G T+ G PHAE A Sbjct: 1 MTLLPEEFREELRKLSFLSTGESSPNPPVSCLITDVDNARILAKGRTSPTGGPHAERNAY 60 Query: 60 --LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG-L 116 + G +VTLEPC+H G++PPC I+E + + DP+ V L Sbjct: 61 YEFVKNGFFKEPHNVWVTLEPCTHSGKTPPCLDLILEHKPKTLYYGRKDPNPLVRENEGL 120 Query: 117 QWLSQKGI--IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + ++GI + + + + L +++R K+ + LK A+S++ V Sbjct: 121 ELCRRRGILVVAEPGLREIAEESLFGFVSRIERKKPSMILKTALSKEGFFSKRDKFPVRF 180 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG 213 +G IS + +LRA+ DA+LVG GT+ D+P L R+ Sbjct: 181 SGNISNHLTSILRAKCDAVLVGPGTLFHDNPGLEFRIGE 219 >gi|300788900|ref|YP_003769191.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis mediterranei U32] gi|299798414|gb|ADJ48789.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Amycolatopsis mediterranei U32] Length = 363 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 51/218 (23%), Positives = 86/218 (39%), Gaps = 13/218 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R H+ L A S D + + ++ V LRA++DAI VG GTV AD+P Sbjct: 1 MISRPHVLLSAAQSLDGYLDDTSPERLVLSTEDDFAVVDRLRAEADAIFVGAGTVRADNP 60 Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R L+ P+++ + L D++ ++ P A Sbjct: 61 RLLVRSPELRRKRLEQGKSEQPVKVTVTTRG-LDPDAQFFTVGDTEKIVYA----PPGAA 115 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + + + D ++L L RG+ +LLVEGG + F+ L D + L + Sbjct: 116 DALKHVATVVDAGNPPDFGRVLDDLGARGIENLLVEGGGGIHTRFLTEGLADELRLAIAP 175 Query: 318 IVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYI 355 +G+ P + G + + + LEY Sbjct: 176 FFVGQPDAPRFVGPGLYPRPLVLTAANELQGMAVLEYR 213 Score = 87.3 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 9/126 (7%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60 + D + + A+ + + V +I DG V+ G + G P HAE AL Sbjct: 219 TGRDVQRLKEAIALAAECPPSHT--FRVGAVITDADGEVVATG-HSGEGDPGNHAEEAAL 275 Query: 61 EEAGEEAR--GATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 + G + R GAT Y +LEPCSH P C Q I++ GI RVV +P V V RG + Sbjct: 276 AKCGGDPRLAGATMYSSLEPCSHRSSHPRSCTQLILDAGIPRVVFAWREPPVFVDARGTE 335 Query: 118 WLSQKG 123 L Q G Sbjct: 336 LLRQAG 341 >gi|75761016|ref|ZP_00741019.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491502|gb|EAO54715.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 148 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 40/92 (43%), Positives = 54/92 (58%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D +M AL+ + G TS NP V ++VKDG ++G G G HAEV AL+ A + Sbjct: 55 DQEYMRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALQMASQN 114 Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIR 98 A+ AT YVTLEPCSH+G+ +IE G+ Sbjct: 115 AKDATVYVTLEPCSHFGKHHLVVNXLIEKGVS 146 >gi|312194017|ref|YP_004014078.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] gi|311225353|gb|ADP78208.1| bifunctional deaminase-reductase domain protein [Frankia sp. EuI1c] Length = 235 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 83/226 (36%), Gaps = 18/226 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R ++ L A S D I A + ++ ++V +RA DAILVG GT+ ADDP+ Sbjct: 1 MTRPYVVLSCATSIDGYIDDASETRLRLSNEADFDRVDEVRAGCDAILVGAGTIRADDPK 60 Query: 207 LTCRLNGLQ--------EHSPMRIILDPHFKLSLDSKIIK------TALLAPVIIVTEND 252 L R + P+++ L L ++ T V+ + Sbjct: 61 LLIRSPARRRARMSRGLPSHPLKVTLTATGDLDPSARFFTAGDPDGTDGAGQVVYTATDA 120 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 + D DL +L L RGV LLVEGG AV F+ L D + Sbjct: 121 AARARARLGAVATVVEAGDPIDLPTVLADLATRGVARLLVEGGGAVHTQFLTEDLADELH 180 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEY 354 L + +G+ P + G + G V L Y Sbjct: 181 LVVAPFFVGDPRAPRFVGPGTFPHDPTHPARLAETTQLGDVVLLRY 226 >gi|167043956|gb|ABZ08643.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG3J11] Length = 217 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 98/213 (46%), Gaps = 11/213 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + A++ D + S ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 6 PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLSV 64 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINII 268 +++ +P+RIILD + + S+I+KT P II V++ K + +I Sbjct: 65 H--NIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQVI 122 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTAT 182 Query: 327 SPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 + ++ ++V L Y Sbjct: 183 TLVDGDGFSTIAKSIRLKLKSVSKIKNEVILRY 215 >gi|217076038|gb|ACJ86378.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc mesenteroides] Length = 135 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 3/133 (2%) Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A + + T NP +IVKDG VI G G HAE+ A Sbjct: 3 DLTWMKLAADEAIRAMPYQTFENPRGGAVIVKDGQVITTGYHEKFGEAHAEINAFNRVKN 62 Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVTLEPCS +G+ CA I G++RVVV DP+ + +G++ L G Sbjct: 63 KTEFLGATLYVTLEPCSTHGKVGSCAVQIQNWGLKRVVVGSIDPNPSTNAKGIKMLGSPG 122 Query: 124 IIVDRMMESEGKI 136 I VD + E K Sbjct: 123 ISVDVLNTYENKE 135 >gi|227826855|ref|YP_002828634.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.14.25] gi|227829432|ref|YP_002831211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus L.S.2.15] gi|229578215|ref|YP_002836613.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus Y.G.57.14] gi|229583070|ref|YP_002841469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus Y.N.15.51] gi|229584037|ref|YP_002842538.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.16.27] gi|284996814|ref|YP_003418581.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.D.8.5] gi|227455879|gb|ACP34566.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.S.2.15] gi|227458650|gb|ACP37336.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus M.14.25] gi|228008929|gb|ACP44691.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus Y.G.57.14] gi|228013786|gb|ACP49547.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus Y.N.15.51] gi|228019086|gb|ACP54493.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus M.16.27] gi|284444709|gb|ADB86211.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase [Sulfolobus islandicus L.D.8.5] gi|323473972|gb|ADX84578.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus REY15A] gi|323476967|gb|ADX82205.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus HVE10/4] Length = 211 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +S D + ++ K + H +R++ DA++VG TV D+P LT Sbjct: 3 PYVIIFSTLSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 + + +P+R+++ F L KI T I+ T N + F +K + + Sbjct: 62 KYS-KNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TIVYTSNYESEKVEEFNRKGVIVRK 118 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D V L+VEGG + FI L D I + S + G G+ Sbjct: 119 FLHLDDLLEDLY-NSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSFAQ 176 Query: 330 EEGYLEKN 337 +G++ ++ Sbjct: 177 GDGFIGED 184 >gi|256786427|ref|ZP_05524858.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] gi|289770318|ref|ZP_06529696.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] gi|289700517|gb|EFD67946.1| bifunctional enzyme deaminase/reductase [Streptomyces lividans TK24] Length = 376 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 H+ L AVS D + G + ++ ++V +RA DAILVG GTV AD+P Sbjct: 1 MPLPHVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ + P+++ + +L ++ T +++T +D A Sbjct: 61 LLVNSAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTGGDK--VLLTTDDGARRAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + D + L L R GV L+VEGG V + L D + L + Sbjct: 119 ALGIGADVVSLGADLDWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAP 178 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 + +G+ P G Y V V + Y+ Sbjct: 179 LFVGDPAAPRLFGPGAYQGGRLRLVETRRIEDVVLMRYLP 218 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59 V++ D +++ A + + T SV ++V DG + RG + GG P HAE A Sbjct: 227 VAAADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAA 285 Query: 60 LEEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG 113 L + GAT Y +LEPC+ P PCA+ I++ G+RRVV +PD V+G Sbjct: 286 LAKVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTFVAG 343 >gi|21222507|ref|NP_628286.1| bifunctional enzyme deaminase/reductase [Streptomyces coelicolor A3(2)] gi|5918510|emb|CAB56387.1| putative bifunctional enzyme deaminase/reductase [Streptomyces coelicolor A3(2)] Length = 376 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 86/220 (39%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 H+ L AVS D + G + ++ ++V +RA DAILVG GTV AD+P Sbjct: 1 MPLPHVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDGVRASVDAILVGGGTVRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ + P+++ + +L ++ T +++T +D A Sbjct: 61 LLVNSAERRAARVADGRAEYPLKVTVSGSGELDPAARFWHTGGDK--VLLTTDDGARRAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + D + L L R GV L+VEGG V + L D + L + Sbjct: 119 ALGIGADVVSLGADLDWRAALEYLHDRRGVRRLMVEGGGTVHTQLLQQGLADELQLVLAP 178 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 + +G+ P G Y V V + Y+ Sbjct: 179 LFVGDPAAPRLFGPGAYQGGRLRLVETRRIEDVVLMRYLP 218 Score = 78.4 bits (192), Expect = 2e-12, Method: Composition-based stats. Identities = 41/118 (34%), Positives = 61/118 (51%), Gaps = 8/118 (6%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59 V++ D +++ A + + T SV ++V DG + RG + GG P HAE A Sbjct: 227 VAAADRHWLALACELAEL-CPPSDTAFSVGAVVVAADGSELARGHSREGGDPVVHAEEAA 285 Query: 60 LEEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSG 113 L + GAT Y +LEPC+ P PCA+ I++ G+RRVV +PD V+G Sbjct: 286 LAKVDPEDPRLPGATVYSSLEPCARRASRPAPCARLILDAGVRRVVTAWREPDTFVAG 343 >gi|239930347|ref|ZP_04687300.1| riboflavin/cytosine deaminase [Streptomyces ghanaensis ATCC 14672] gi|291438692|ref|ZP_06578082.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis ATCC 14672] gi|291341587|gb|EFE68543.1| bifunctional enzyme deaminase/reductase [Streptomyces ghanaensis ATCC 14672] Length = 377 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTIRADNPR 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ + P+++ + L ++ T ++ T + A Sbjct: 61 LLVNSPERRADRVARGRPEYPLKVTVSGSGDLDPAARFWHTGGEK--VLYTTDRGAERAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + D ++LL L RGV L+VEGG V + L D + L + Sbjct: 119 AHGLAADVVPLGPELDWRRLLEHLHAVRGVRRLMVEGGGLVHTQLLTQGLADELQLVLAP 178 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 +++G+ P G Y + G V + Y Sbjct: 179 LLVGDPDAPRLFGPGSYQGGRLRLLETRAVGDVVLMRYEP 218 Score = 78.0 bits (191), Expect = 2e-12, Method: Composition-based stats. Identities = 46/142 (32%), Positives = 65/142 (45%), Gaps = 9/142 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60 S+ D +++ A + + T SV ++V DG + RG + GG P HAE AL Sbjct: 228 SAADHHWLALACDLAER-CPPSGTAFSVGAVVVAADGTELARGHSREGGDPVVHAEEAAL 286 Query: 61 EEAGE---EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRV-SGRG 115 + AT Y +LEPC+ P PCA+ I++ GIRRVV +PD V G Sbjct: 287 AKTDPTDPRLATATVYSSLEPCARRASRPAPCARLILDAGIRRVVTAWREPDTFVPGADG 346 Query: 116 LQWLSQKGIIVDRMMESEGKIF 137 L G V + E E + Sbjct: 347 SGVLVDGGATVVVLPEHEERAQ 368 >gi|255728685|ref|XP_002549268.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida tropicalis MYA-3404] gi|240133584|gb|EER33140.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida tropicalis MYA-3404] Length = 247 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 60/192 (31%), Positives = 93/192 (48%), Gaps = 16/192 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R +TL A S D+ I ++ +K H LR++ D+I +GIGTVLADDP+L Sbjct: 26 NRPFVTLTYAQSLDSKIAAQPGQQTKLSHLETKTMTHYLRSKHDSIFIGIGTVLADDPKL 85 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLD----SKIIKTA-LLAPVIIVTEN-----DDPVLA 257 CR + P IILDP + + KI LAP II+ EN D + Sbjct: 86 NCRYDEKSTIRP--IILDPKAQWQYEKSTLCKICHDGLGLAPFIIIDENMNPSDDSRKIV 143 Query: 258 LAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFI--NSRLVDSIIL 313 K + + + R + K +L L + S+++EGGA V + + LVDS+I+ Sbjct: 144 ENQGGKYVKLPLLEKRNENWKLILEKLKELDIKSVMIEGGAKVINDLLINRDNLVDSLII 203 Query: 314 YRSQIVIGEGGI 325 + + +G+ G+ Sbjct: 204 TVAPVFLGKNGV 215 >gi|238618991|ref|YP_002913816.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus islandicus M.16.4] gi|238380060|gb|ACR41148.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Sulfolobus islandicus M.16.4] Length = 211 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 6/188 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +S D + ++ K + H +R++ DA++VG TV D+P LT Sbjct: 3 PYVIIFSTLSIDGRLATKTG-YSELSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 + + +P+R+++ F L KI T I+ T N + F +K + + Sbjct: 62 KYS-KNRRNPIRVVVTRSFNLDPSYKIFTTPPS--TIVYTSNYESEKVEEFSRKGVIVRK 118 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 D V L+VEGG + FI L D I + S + G G+ Sbjct: 119 FLHLDDLLEDLY-NSFNVKRLMVEGGGHLIWWFIRDNLYDEIRITISPRIFG-NGVSFAQ 176 Query: 330 EEGYLEKN 337 +G++ ++ Sbjct: 177 GDGFIGED 184 >gi|320323039|gb|EFW79128.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea str. B076] gi|320329689|gb|EFW85678.1| ribD C-terminal domain protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330882190|gb|EGH16339.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 224 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R +P+RII L + I K+ + + D + R Sbjct: 61 QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178 Query: 324 GIPSPLEE 331 + + Sbjct: 179 ATATLADG 186 >gi|50426769|ref|XP_461982.1| DEHA2G10010p [Debaryomyces hansenii CBS767] gi|54036250|sp|Q6BII9|RIB7_DEBHA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49657652|emb|CAG90452.1| DEHA2G10010p [Debaryomyces hansenii] Length = 247 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 62/206 (30%), Positives = 100/206 (48%), Gaps = 17/206 (8%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL R R +TL A S D+ I I+ +K H +R++ D I+VG Sbjct: 13 FLEEYLPRPCSNRPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 72 Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKIIKT-----ALLAPVIIVT 249 IGTVLADDP+L CR + +P IILDP K + +++ LAP I++ Sbjct: 73 IGTVLADDPKLNCRFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILID 132 Query: 250 E-----NDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAH 300 E N+D + + + D +L L G+ S++VEGGA++ + Sbjct: 133 ETVTPRNEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGGASIIN 192 Query: 301 SFI-NSRLVDSIILYRSQIVIGEGGI 325 + S+++DS+I+ + +G+ G+ Sbjct: 193 DLLVYSKIIDSLIITIGPVFLGKDGV 218 >gi|317178213|dbj|BAJ56002.1| riboflavin biosynthesis protein [Helicobacter pylori F16] Length = 344 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 133/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 L + H L NPSVAC ++ K+ ++ PHAEV A + A + R Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDSAFKDCVFLITLEPCNSYGKTPACSGLLEVLKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ +G++ + + + L Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIEGVVCESLENKAKDLLLPFRTMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 YHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ + +N+ Y D +DL Sbjct: 244 IAILSKH-SIDPNSKVFSAPN---------------------RLVNVFY-DPKDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNTIALKAPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|55859444|emb|CAH17653.1| HTP reductase [Debaryomyces hansenii] Length = 262 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 59/206 (28%), Positives = 95/206 (46%), Gaps = 17/206 (8%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL R + +TL A S D+ I I+ +K H +R++ D I+VG Sbjct: 28 FLEDYLPRPGSNKPFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVG 87 Query: 197 IGTVLADDPELTCRLNGLQEH--SPMRIILDPHFKLSLDSKII-----KTALLAPVI--- 246 IGTVLADDP+L CR H +P +ILDP K + + LAP I Sbjct: 88 IGTVLADDPKLNCRFEADDGHISTPRPVILDPTGKWVYNKSQLRSVCDDNKGLAPFILID 147 Query: 247 --IVTENDDPVLALAFRKKNINIIYCDC----RDLKKLLTILVGRGVTSLLVEGGAAVAH 300 + N+D + + + + K +L L G+ S+++EGGA++ + Sbjct: 148 DTVTPSNEDIEVIEKQGGAFVKLPLLSSSNRIDNWKVILAKLFELGIKSIMIEGGASIIN 207 Query: 301 SFINSR-LVDSIILYRSQIVIGEGGI 325 + +VDS+I+ + +G+ G+ Sbjct: 208 DLLIYNEVVDSLIITIGPVFLGKDGV 233 >gi|183220072|ref|YP_001838068.1| putative riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910192|ref|YP_001961747.1| pyrimidine reductase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774868|gb|ABZ93169.1| Pyrimidine reductase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778494|gb|ABZ96792.1| Putative riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 213 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 102/211 (48%), Gaps = 7/211 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +++ +A++ D + +T K Q+ + R+QSDA+L+G ++L D+P + Sbjct: 1 MKLSINMAMTLDGKVVRPDGRWYGLTSSEDKTQMDVYRSQSDAVLIGKNSILNDNPIVKI 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR-KKNINII 268 R +P +IL L D + + + P+II T+++ + + K I + Sbjct: 61 R-AVPNALNPRPVILVRKGTLPPDKHVFEESDHIPLIICTKSNLKEIKTSLENKAEIFAL 119 Query: 269 YCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 D D KK+ IL +G ++L+EGG + SF+ + LVD I + +IG+ G+ Sbjct: 120 DSDDIDPKKVTGILKRKGYKNVLLEGGPKLNFSFLEADLVDRIYITVVPYIIGKTGLAGI 179 Query: 329 LEE-----GYLEKNFMCVRRDYFGSDVCLEY 354 + G+ ++N+ + G+++ L Y Sbjct: 180 ADRNSELPGFDKQNWTLKQHFTKGNEIFLVY 210 >gi|261840180|gb|ACX99945.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 52] Length = 344 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKHP-IDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSAFALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|167044545|gb|ABZ09219.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG6N3] Length = 217 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 56/196 (28%), Positives = 95/196 (48%), Gaps = 6/196 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + A++ D + S ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 6 PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKIDDPLLSV 64 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII-VTENDDPVLALAFRKKNINII 268 +++ +P+RIILD + + S+I+KT P II V++ K + +I Sbjct: 65 H--NIKKKNPIRIILDSNATIRSSSRILKTCSKIPTIIAVSKKAQKKNLQKLEKFPVQVI 122 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTAT 182 Query: 327 SPLEEGYLEKNFMCVR 342 + ++ +R Sbjct: 183 TLVDGDGFSTIAKSIR 198 >gi|317182710|dbj|BAJ60494.1| riboflavin biosynthesis protein [Helicobacter pylori F57] Length = 344 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 132/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ +GI+ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIEGIVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKHP-IDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|315585891|gb|ADU40272.1| riboflavin biosynthesis protein RibD [Helicobacter pylori 35A] Length = 344 Score = 136 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 73/334 (21%), Positives = 124/334 (37%), Gaps = 73/334 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIDGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 YHG-------KITGQKSVVFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + +G +EGG + S + +D+++L+ Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLH 304 >gi|308064267|gb|ADO06154.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Sat464] Length = 344 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 132/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G L+ +G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 HHG-------KITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPHSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSALALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|328545540|ref|YP_004305649.1| Bifunctional deaminase-reductase domain protein [polymorphum gilvum SL003B-26A1] gi|326415281|gb|ADZ72344.1| Bifunctional deaminase-reductase domain protein [Polymorphum gilvum SL003B-26A1] Length = 262 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 78/173 (45%), Gaps = 2/173 (1%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + ++ S D I S I G + +H LRA DA+++G GT +ADDP+LT R Sbjct: 55 FVVGQLGQSLDGRIATVNGQSKYINGPGCLSHLHRLRAVCDAVVIGAGTAIADDPQLTVR 114 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L + P R+++DP +L K ++ ++ E + + + Sbjct: 115 L--VDGPHPARVLIDPRGRLPATLKALRDDGTRRFVVTLEGTRLNVPESVEIIRLAGDRD 172 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 + ++ L G LLVEGG+ F++S +D + L + ++IG G Sbjct: 173 GHLAPRAIVEALASHGFRRLLVEGGSWTISRFLSSGCLDRLHLLIAPMIIGAG 225 >gi|291617164|ref|YP_003519906.1| RibD [Pantoea ananatis LMG 20103] gi|291152194|gb|ADD76778.1| RibD [Pantoea ananatis LMG 20103] Length = 162 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 74/153 (48%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M AL +SR + NP V C+IV+DG V+ +G T G HAE+ A+ + Sbjct: 1 MMLALEYSRQALPECRPNPPVGCVIVRDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISEC 60 Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMM 130 YVTLEPCS GR+P CA I E + + + +DDP + G G L + GI + R Sbjct: 61 EIYVTLEPCSFQGRTPSCALTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGIALHRAS 120 Query: 131 ESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 ES + + ++ + H +I +S Sbjct: 121 ESRRSRNFFSPIWTRLRHKHHFYRRIGISAGRY 153 >gi|188528275|ref|YP_001910962.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470] gi|188144515|gb|ACD48932.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Shi470] Length = 344 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 133/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G L+ +G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLKNKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVVFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFSALALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|158317044|ref|YP_001509552.1| deaminase-reductase domain-containing protein [Frankia sp. EAN1pec] gi|158112449|gb|ABW14646.1| bifunctional deaminase-reductase domain protein [Frankia sp. EAN1pec] Length = 252 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 54/247 (21%), Positives = 88/247 (35%), Gaps = 37/247 (14%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D I + ++ ++V +RA DAILVG T+ D+P Sbjct: 1 MTARPYVLLSCAMSLDGRIDDCSPQRLVLSSQADLDRVDEVRAGCDAILVGARTLRRDNP 60 Query: 206 ELTCRLN--------GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----- 252 L R + +P+R +L +L D++ V Sbjct: 61 GLAVRSERRRAERTAAGRPATPLRAVLTSGGRLDPDARFFLDGAEKVVYRFAGAAPRPAP 120 Query: 253 -------------------DPVLALAFRKKNI-NIIYCDCRDLKKLLTILVGRGVTSLLV 292 P A+ + ++ + L+ LL L RG LLV Sbjct: 121 ESGPGAGAGAGAGAGTGTGSPAPAVPPDLSAVATVVDLEAPPLEHLLDDLSRRGTRRLLV 180 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGS 348 EGG V +F+ + LVD + L + +GE P+ + G V Sbjct: 181 EGGTTVHTAFLTAGLVDELHLVIAPFFVGEAAAPTFVGPGSFPFDTAHRLRLVDVRQLDD 240 Query: 349 DVCLEYI 355 V L Y+ Sbjct: 241 VVLLRYL 247 >gi|149375142|ref|ZP_01892914.1| bifunctional deaminase-reductase-like protein [Marinobacter algicola DG893] gi|149360506|gb|EDM48958.1| bifunctional deaminase-reductase-like protein [Marinobacter algicola DG893] Length = 290 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 13/206 (6%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL 214 ++ S D I S I G +H LRA S+A++VG GT D+P LT R Sbjct: 79 QMGQSLDGRIATVTGASKFINGEDGITHLHRLRAVSEAVIVGAGTASTDNPRLTVRKT-- 136 Query: 215 QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC---- 270 +P+R+++D + ++ + +P + + D + + + C Sbjct: 137 SGINPVRVVIDRNHRVPDSHHLFSDE-ASPTLRLVAGDYHAGDKLAPRHGVTDVPCLGRD 195 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 D D +L +L G+ + VEGG F+N+ L+D + + + ++IG G P+ Sbjct: 196 DTTDPAHILEVLADFGLRKIFVEGGGLTVSEFLNAALLDRLHVMVAPMIIGS-GRPA-FS 253 Query: 331 EGYLEKNFMCVRRDY----FGSDVCL 352 ++K +R GSD+ Sbjct: 254 LPEIKKLDRALRPKAQMVDLGSDMLF 279 >gi|330944605|gb|EGH46556.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 224 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 50/190 (26%), Positives = 79/190 (41%), Gaps = 12/190 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND--DPVLALAFRKK 263 +LT R +P+RII L + I K+ II T D + R Sbjct: 61 QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPE--KTIIATSEQARDHEMVKNIRAC 116 Query: 264 NINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 117 GKEVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIG 176 Query: 322 EGGIPSPLEE 331 + + Sbjct: 177 GAATATLADG 186 >gi|167044799|gb|ABZ09467.1| putative RibD C-terminal domain protein [uncultured marine crenarchaeote HF4000_APKG8D6] Length = 217 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 6/196 (3%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + A++ D + S ++ K +VH LR++ DAIL+G TV DDP L+ Sbjct: 6 PRVIFSAAITLDGKLATRSGDSK-LSSKKDKIRVHKLRSKVDAILIGKNTVKFDDPLLSV 64 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKKNINII 268 +++ +P+RIILD + +S S+I+KT P IIV L K + +I Sbjct: 65 H--NIKKKNPIRIILDSNATISSSSRILKTCSKIPTIIVVSKKAQKKNLQKLEKFPVQVI 122 Query: 269 YC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 C D +KKLL IL +G+ ++LVEGG +F+ LVD I+ + ++G Sbjct: 123 VCGNDTVSIKKLLGILKKKGIKNILVEGGGTANWAFVKENLVDEAIITITPYLVGGMTST 182 Query: 327 SPLEEGYLEKNFMCVR 342 + ++ +R Sbjct: 183 TLVDGDGFSTIAKSIR 198 >gi|28868061|ref|NP_790680.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. tomato str. DC3000] gi|28851297|gb|AAO54375.1| ribD C-terminal domain protein [Pseudomonas syringae pv. tomato str. DC3000] gi|331018395|gb|EGH98451.1| ribD C-terminal domain protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 224 Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R +P+RII L + I K+ + + D + R Sbjct: 61 QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATSEQARDHEMVKHIRACGK 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178 Query: 324 GIPSPLEE 331 + + Sbjct: 179 ATATLADG 186 >gi|258650582|ref|YP_003199738.1| bifunctional deaminase-reductase domain-containing protein [Nakamurella multipartita DSM 44233] gi|258553807|gb|ACV76749.1| bifunctional deaminase-reductase domain protein [Nakamurella multipartita DSM 44233] Length = 230 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 84/221 (38%), Gaps = 12/221 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R + L S D + AG + ++ ++V +RA DAILVG TV D+P Sbjct: 1 MSERPYTLLSCCTSLDGYLAGAGQRRLLLSNDADFDRVDEVRAGCDAILVGAATVRKDNP 60 Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R ++ SP ++ L +L ++ + + Sbjct: 61 RLLVRTATRRDDRVTRGQAPSPAKVTLTCGAQLDPTARFFTEGETDRYVYCASSAVTQAR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + I DL + L GRG+ L+VEGG +V F+ + L D + L + Sbjct: 121 RSLGPRATVIDGGQPVDLAWMSQDLYGRGIRRLMVEGGGSVHTQFLTAGLADELNLVIAP 180 Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEY 354 +G+ +++G + G V L Y Sbjct: 181 FFVGDHRGRRFVDDGDFPFHPGRRARLAEVRQIGDVVLLRY 221 >gi|254389245|ref|ZP_05004474.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|326444933|ref|ZP_08219667.1| putative riboflavin-specific deaminase/reductase [Streptomyces clavuligerus ATCC 27064] gi|197702961|gb|EDY48773.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 227 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 51/225 (22%), Positives = 89/225 (39%), Gaps = 12/225 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A++ D + A + ++ ++V +RAQSDAIL+G TV D+P Sbjct: 1 MIARPYVVLSAAMTVDGYLDDASPERLLLSNAADFDRVDQVRAQSDAILIGATTVRKDNP 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R+ + P+++ + LS D VI V + + V Sbjct: 61 RLLVNSDERRAKRVADGKSAYPLKVTVTRTGDLSADLNFWHHGGKKLVITVDDAVEKVRT 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ + D RD +L L R V L+VEGG + + + L D + L + Sbjct: 121 TLGDLADVVSVGPDLRDWGLVLDELGRRNVGQLMVEGGGTIHTQLMAADLADEVHLAIAP 180 Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +++G+ G L G + V + Y K Sbjct: 181 LLVGQPGAARFLGAADYPGGSTARMKVLEVRAIDDMVFVRYAPKE 225 >gi|298485418|ref|ZP_07003506.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160054|gb|EFI01087.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 224 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 8/188 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R P+RII L + I K+ + + D + R Sbjct: 61 QLTNRYE--SGRDPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178 Query: 324 GIPSPLEE 331 + + Sbjct: 179 ATATLADG 186 >gi|311898176|dbj|BAJ30584.1| putative 5-amino-6-(5-phosphoribosylamino) uracil reductase [Kitasatospora setae KM-6054] Length = 231 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 56/225 (24%), Positives = 85/225 (37%), Gaps = 13/225 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R H+ L AVS D + A + ++ ++V LRA SDAILVG GT+ AD+P Sbjct: 1 MPRPHVLLSAAVSIDGHLDDASPERLLLSNAADFDRVDALRADSDAILVGGGTLRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R P+++ L +L + T + A Sbjct: 61 LLVNSPERRAARTAAGLPAYPLKVTLSASGRLDPALRFWHTGGAKLAYTTDATAPALAAA 120 Query: 259 AFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ L +L L RGV L+VEGG +V F+ L D + L + Sbjct: 121 LAGAPGTEVVGLGAAVPLGAVLDDLGARGVRRLMVEGGGSVHTRFLAEGLADELQLAVAP 180 Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +++G+ P L G + + G V L Y K Sbjct: 181 LLVGQADAPRFLSPAAYPGGPARRMRLLGARTVGDVVLLRYAPKE 225 >gi|282164321|ref|YP_003356706.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine reductase [Methanocella paludicola SANAE] gi|282156635|dbj|BAI61723.1| putative 2,5-diamino-6-hydroxy-4-(5- phosphoribosylamino)pyrimidine reductase [Methanocella paludicola SANAE] Length = 227 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 55/221 (24%), Positives = 97/221 (43%), Gaps = 14/221 (6%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTV 200 R ++TL ++ D + + S I S+ +H R + DAI+VG T+ Sbjct: 1 MSASRPYVTLISEMTVDGKLTLKRGLSSKIIMGLMDMESQRFLHKKRTEFDAIMVGSNTI 60 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 D+ LT RL ++ SP+R++ + S ++ +I+V+ P A Sbjct: 61 KIDNSILTNRL--VEGRSPVRVVPCSDASIPPGSNVLNHD-APTIIVVSGRASPEKVEAI 117 Query: 261 RKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 R+K ++ C + DL+ ++ L RG+ L+VEGG + I ++D IIL + Sbjct: 118 RQKGAEVMVCGKEAVDLELMMEGLTKRGIKRLMVEGGPTLIWLLIQKHMIDHIILIQIPY 177 Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRD-----YFGSDVCLEY 354 +IG PS + ++ V D G+ + EY Sbjct: 178 IIGGDSTPSLVGGPGVDSIGQVVGTDLTDFYKVGNHLITEY 218 >gi|158425795|ref|YP_001527087.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571] gi|158332684|dbj|BAF90169.1| putative pyrimidine reductase [Azorhizobium caulinodans ORS 571] Length = 246 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 45/173 (26%), Positives = 83/173 (47%), Gaps = 4/173 (2%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 + ++ S D I + S I G + +H +RA DA+LVG+GTV+ADDP+L R Sbjct: 21 FVIGQLGQSLDGRIALPSGESKYINGASGLDHIHRIRAMVDAVLVGVGTVIADDPQLNVR 80 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 + P R++LDP+ +L ++ ++ +++ AL + + + Sbjct: 81 R--VPGRDPARVVLDPNGRLPASARCLQNDGARRLVV--RRPSAAGALPDGVERVEVEGT 136 Query: 271 DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D ++ L RG+ +LVEGG +F++ +D + S +++G G Sbjct: 137 GALDPAAVVAALRARGLKRILVEGGPRTLSAFLDGGAIDHFHIIVSPVILGSG 189 >gi|118431394|ref|NP_147843.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1] gi|116062718|dbj|BAA80270.2| pyrimidine nucleotide reductase [Aeropyrum pernix K1] Length = 220 Score = 135 bits (341), Expect = 8e-30, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 76/180 (42%), Gaps = 9/180 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + + + D I ++ H RA +DA++VG T + D P Sbjct: 1 MARPYTFIFSTATLDGRIASITG-YSLLSCREDFELQHKYRASADAVMVGSRTAVLDRPR 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT RL + SP+R+++D K+ D + V++ E + ++ + Sbjct: 60 LTVRL--ARGRSPLRVVVDSGLKVPPD---VAGLRRGSVLVTAEGHSRERLKPYLERGVE 114 Query: 267 IIYCDC--RDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ DL++ + +L R GV L+VEGG + + + LVD + + + G G Sbjct: 115 VVEAGRGKVDLERAVAVLRERLGVRVLMVEGGGGLNCAMLEKGLVDEVRATIAPYIFGGG 174 >gi|330988983|gb|EGH87086.1| ribD C-terminal domain-containing protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 224 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFNDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R +P+RII L + I K+ + + D + R Sbjct: 61 QLTNRYE--SGRNPIRIIPTTSLDLPASASIFKSPEKTIIATTEQARDHDMVKHIRACGK 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 119 EVLFAGAKHVDFTRLFPMLEARGIKHIMVEGGGNLNWQVFNLDLVDEIILMQVPIIIGGA 178 Query: 324 GIPSPLEE 331 + + Sbjct: 179 ATATLADG 186 >gi|161529120|ref|YP_001582946.1| deaminase-reductase domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340421|gb|ABX13508.1| bifunctional deaminase-reductase domain protein [Nitrosopumilus maritimus SCM1] Length = 218 Score = 135 bits (341), Expect = 9e-30, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 11/219 (5%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 + R H+ L A+S D I S ++ ++H LR+ DAIL+G T D+ Sbjct: 1 MEKSRPHVILSGAISVDGKIATKTNDSK-LSSQKDIQRLHKLRSSVDAILIGKNTASRDN 59 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA-FRKK 263 P LT R ++ +P+RI+LD +S SKI++++ P II L K Sbjct: 60 PLLTVR--HVKGKNPIRIVLDSKGTISKTSKILQSSNKVPTIIAISKKITKKNLEKLEKF 117 Query: 264 NINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 + II D +LK LL L + + ++LVEGG V F+ L D +IL S ++G Sbjct: 118 PVEIISTGNDSVNLKLLLKKLSKKKIKTILVEGGGTVNWEFVKHNLFDEMILTISPYLLG 177 Query: 322 EGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEYI 355 S L + N + + L Y+ Sbjct: 178 GEDSISYLRGTGFSRISHSPNLRLKSVKRLKNHLVLHYV 216 >gi|169607048|ref|XP_001796944.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15] gi|111065288|gb|EAT86408.1| hypothetical protein SNOG_06577 [Phaeosphaeria nodorum SN15] Length = 255 Score = 135 bits (341), Expect = 1e-29, Method: Composition-based stats. Identities = 51/178 (28%), Positives = 86/178 (48%), Gaps = 21/178 (11%) Query: 169 CGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLN-------GLQEHSPMR 221 ++G SK H LR++ DAIL+G GT +ADDP L CR++ E P Sbjct: 60 GIQTALSGPQSKAMTHYLRSRHDAILIGCGTAIADDPSLNCRIDGVGGYGGAGLEGQPRP 119 Query: 222 IILDPHFKLSLD--SKIIKTALLAP---VIIVTEND--DPVLALAFRKKNINIIYCDCR- 273 +++DP+ + + SK++K A V +V+ + + Sbjct: 120 VVVDPNGRWDVSDASKVVKLAREGRGKGVWVVSAKGSISEEKKVVVESVGGEAFELEVVE 179 Query: 274 ---DLKKLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 D KK+L +L G+ S+++EGG AV + + N LVDS+I+ + + +G+GG+ Sbjct: 180 GKMDWKKILNVLAKEGIRSVMIEGGGAVINGLLSKENMGLVDSVIVTIAPVWLGKGGV 237 >gi|254780015|ref|YP_003058122.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38] gi|254001928|emb|CAX30181.1| Riboflavin biosynthesis protein RibD [Helicobacter pylori B38] Length = 344 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 130/360 (36%), Gaps = 81/360 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 L + H L NPSVAC ++ K+ ++ HAEV A + A + R Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPHLK 70 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 NDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L L + I E K R +E+ + L + ++ Sbjct: 131 TEENEAKKGG--LARLQKACIETIICRNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA D +++ T+ D+P L R Q + Sbjct: 189 DYHHG-------KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYQHKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL + SK+ AP +V DP +DL Sbjct: 242 PNIAILSKR-SIDPHSKVFS----APNRLVNTFHDP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D+++L+ +IG+ + +P + L Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGKAFNTLALKTPFKGRLL 328 >gi|308062769|gb|ADO04657.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori Cuz20] Length = 344 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 125/334 (37%), Gaps = 73/334 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G L+ +G++ + + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLKKARIEGVVCESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHGR-------ITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + +G +EGG + S + +D+++L+ Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLH 304 >gi|328848151|gb|EGF97399.1| hypothetical protein MELLADRAFT_79837 [Melampsora larici-populina 98AG31] Length = 269 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 22/242 (9%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 H L + +R +TL A S D I + ++G S H++R + D ILVGI Sbjct: 27 FHQNLNHDLSRRPFVTLTYAQSLDGKIAGVDGRQLRLSGNQSMKMTHMMRTRHDGILVGI 86 Query: 198 GTVLADDPELTCR---LNGLQEHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTE 250 GT+L DDP+LT R E+ P I+LD + +D K+IK P +I Sbjct: 87 GTLLNDDPQLTARNLSFTVPLENQPQPIVLDTRLRTPIDCKLIKNYRNQTGKQPWLICAR 146 Query: 251 ND-DPVLALAFRKKNINIIYC--------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 + + + +I DL+K+ + G+ L++EGG+++ S Sbjct: 147 SMISSQDRQSLEEAGARVIPITNGMNPSNQGLDLEKVFEVCKINGINRLMIEGGSSIISS 206 Query: 302 FI----NSRLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIG 356 + + +++ +++ S ++GEG + + + L ++ GSD Y Sbjct: 207 CLNYTGDHPILNILVVTVSPYMVGEGLTVKTSNIDSRLSL-LRHIQTKILGSDAVFAYTS 265 Query: 357 KN 358 N Sbjct: 266 SN 267 >gi|217034301|ref|ZP_03439718.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10] gi|216943273|gb|EEC22738.1| hypothetical protein HP9810_885g32 [Helicobacter pylori 98-10] Length = 344 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 77/362 (21%), Positives = 131/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ + II + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL + +SK+ AP +V +CD +DL Sbjct: 244 IAILSKR-SIDPNSKVFS----APNRLVNA------------------FCDPKDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|29830662|ref|NP_825296.1| riboflavin/cytosine deaminase [Streptomyces avermitilis MA-4680] gi|29607774|dbj|BAC71831.1| putative diaminohydroxyphosphoribosylaminopyrimi dine deaminase (N-terminal)/ 5-amino-6-(5-phosphoribosylamino) uracil reductase [Streptomyces avermitilis MA-4680] Length = 376 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 86/220 (39%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++G ++V +RA SDAILVG GT+ D+P Sbjct: 1 MPHPYVLLSAAVSLDGFLDDTGPDRLLLSGPADFDRVDEVRAASDAILVGAGTLRTDNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R+ P+++ + L D++ T V + + + L Sbjct: 61 LLVNSAERRAARVAEGLPEYPLKVTVTASGDLDPDAQFWHTGGEKAVYTTDKGAERLREL 120 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + + + +L L +GV L+VEGG V + L D + L + Sbjct: 121 GIAADVVAV--GAELEWRAVLDHLGRVKGVRRLMVEGGGRVHTQLLQQGLADELQLAVAP 178 Query: 318 IVIGEGGIPSPLE-EGYLEKNFMCVRRDYFGSDVCLEYIG 356 + +G+ P GY V G V + Y+ Sbjct: 179 LFVGQAQAPRMFGSGGYPPGRMRLVETRPVGDVVLMRYVP 218 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 40/116 (34%), Positives = 59/116 (50%), Gaps = 8/116 (6%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQAL 60 ++ D +++ A + + T SV +IV DG + RG + GG P HAE AL Sbjct: 228 TAADRHWLALACELADR-CPPSRTAFSVGAVIVAADGTELARGHSREGGDPVVHAEEAAL 286 Query: 61 EEAG---EEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVS 112 + GAT Y +LEPC+ P PCA+ I++ G+RRVV +PD V+ Sbjct: 287 AKLDAEDPRLAGATVYSSLEPCARRTSRPRPCARLILDAGVRRVVTAWREPDTFVA 342 >gi|322711515|gb|EFZ03088.1| hypothetical protein MAA_00162 [Metarhizium anisopliae ARSEF 23] Length = 243 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 98/237 (41%), Gaps = 33/237 (13%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 TL A S D+ + ++ I+G S+ H R++ D IL+G+GT +ADDP L Sbjct: 1 MPFTTLTFATSLDSSLTLSPGAPTAISGPRSEAMTHYPRSRHDGILIGVGTAVADDPSLN 60 Query: 209 CRLN-------GLQEHSPMRIILDPHFKL--SLDSKIIK----TALLAPVIIVTENDDPV 255 CR+ + P +++DP + + +SK+ K P ++ P Sbjct: 61 CRIAGVGGYGGDGLDGQPRPVVIDPTARWEFTDNSKLFKLCREGRGRPPWVVTALRKPPA 120 Query: 256 LALAFRKK------NINIIYCD----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 A +K N+ I + D LL G+ S++VE G + +S ++ Sbjct: 121 DIRALLEKYGGKYINVEIPTSNIGEHHLDWNLLLVRFKENGLNSVMVEAGGQIINSLLSP 180 Query: 306 RL---VDSIILYRSQIVIGEGGIP-SP------LEEGYLEKNFMCVRRDYFGSDVCL 352 + +D +I+ + +G+GG+ SP V+ FG DV L Sbjct: 181 QYQPNIDMVIVTIAPTWLGQGGVVLSPRRCFNDSGIAISAARLTGVKWYPFGDDVVL 237 >gi|71737585|ref|YP_275900.1| riboflavin biosynthesis protein RibD domain-containing protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71558138|gb|AAZ37349.1| RibD C-terminal domain protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 217 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 78/188 (41%), Gaps = 8/188 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPI----TGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +T+ +S D + M S +H R + DAI+VG T++ DDP Sbjct: 1 MKVTVFSQISIDGKLTMGKGASSKPLFQNFDDDDMRFIHKFRGEVDAIMVGRNTIVTDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R +P+RII L + I K+ + + D + R Sbjct: 61 QLTNRYE--SGRNPIRIIPTTSLDLPTSASIFKSPEKTIIATTEQARDHEMVKHIRACGK 118 Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 +++ + D +L +L RG+ ++VEGG + N LVD IIL + I+IG Sbjct: 119 EVLFAGAKHVDFTRLFPMLEVRGINHIMVEGGGHLNWQVFNLDLVDEIILMQVPIIIGGA 178 Query: 324 GIPSPLEE 331 + + Sbjct: 179 ATATLADG 186 >gi|254578456|ref|XP_002495214.1| ZYRO0B06028p [Zygosaccharomyces rouxii] gi|238938104|emb|CAR26281.1| ZYRO0B06028p [Zygosaccharomyces rouxii] Length = 231 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 64/207 (30%), Positives = 95/207 (45%), Gaps = 14/207 (6%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL YL + + ITL A S D+ I I+ +K H LR D ILVG Sbjct: 13 FLRPYLPPDNDSKPFITLTYAQSLDSRISKGHGIRTTISHPETKTMTHYLRYHHDGILVG 72 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT-----ALLAPVIIVTEN 251 GT LADDP L C+ N + SP IIL+ K + ++ P+I+V+E Sbjct: 73 TGTALADDPGLNCKYNDAMDQSPRPIILNHSGKWKFNGSKLQELYEKGHGKKPIIVVSE- 131 Query: 252 DDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFI-NSRLVD 309 +++ + C R L L G+ S++VEGGA V + + +S LV+ Sbjct: 132 -----LPVDEDSSVDYLVCQSRQWSILFDKLHKEYGLKSIMVEGGANVINQLLMSSNLVN 186 Query: 310 SIILYRSQIVIGEGGIP-SPLEEGYLE 335 S+I+ + +GE G+ SP L+ Sbjct: 187 SLIITVGPVYLGEKGVSVSPAGPLQLK 213 >gi|302559850|ref|ZP_07312192.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000] gi|302477468|gb|EFL40561.1| riboflavin/cytosine deaminase [Streptomyces griseoflavus Tu4000] Length = 363 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 52/220 (23%), Positives = 86/220 (39%), Gaps = 12/220 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L RL + P+++ + +L ++ T ++ T ++ A Sbjct: 61 LLVNSPERRAARLAEGRTEYPLKVTVSGSGELDPAARFWHTGGEK--VLYTTDEGAERAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + D ++LL L RGV L+VEGG + I L D + L + Sbjct: 119 VLGIAADVVPLGAELDWRRLLEHLHAARGVRRLMVEGGGLIHTQLITQGLADELQLAVAP 178 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYIG 356 + +G+ P G Y G V + Y Sbjct: 179 LFVGDPEAPRLFGPGAYQGGRLRLTGTRQVGDVVLMRYEP 218 Score = 65.7 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%) Query: 30 SVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALEEAGE---EARGATAYVTLEPCSHYG 83 SV ++V DG + RG + GG P HAE AL +A AT Y +LEPC+ Sbjct: 253 SVGAVVVAADGTELARGHSREGGDPVVHAEEAALAKADPTDPRLATATVYSSLEPCARRA 312 Query: 84 RSPP-CAQFIIECGIRRVVVCVDDPDV 109 P C + I++ G+RRVV +PD Sbjct: 313 SRPASCVRLILDAGVRRVVTAWREPDT 339 >gi|291302010|ref|YP_003513288.1| bifunctional deaminase-reductase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290571230|gb|ADD44195.1| bifunctional deaminase-reductase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 215 Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 81/214 (37%), Gaps = 9/214 (4%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 +R + L A+S D + A + ++ N+V LR DAILVG TV D+ Sbjct: 1 MTVRRPWVLLSAAMSLDGYLDDATATRLVLSNDEDLNRVRQLRGHYDAILVGAETVRRDN 60 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 P L + P ++ L L S+ T AP+++ L ++ Sbjct: 61 PSLRA----VDGPQPRKVTLTATGDLDPASRFFTTG-AAPLVLCPPPVAEELRRRLGERA 115 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 L ++L L GV L+VEGG +V F+ L D + L + +G+ Sbjct: 116 EVQSLPAGAGLAEILQTLWNLGVRRLMVEGGGSVHTQFLTQGLADELRLAVAPFFVGDAA 175 Query: 325 IPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 P E G + ++ G L Y Sbjct: 176 APRFTEPGKFPHDGQHRMRLYEVEHLGDMAVLHY 209 >gi|167849555|ref|ZP_02475063.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei B7210] gi|167922717|ref|ZP_02509808.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei BCC215] Length = 94 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/91 (50%), Positives = 57/91 (62%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFII 93 AGE ARGATAYVTLEPC+H+GR+PPCA ++ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALV 94 >gi|167828089|ref|ZP_02459560.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9] Length = 97 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 46/93 (49%), Positives = 57/93 (61%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIEC 95 AGE ARGATAYVTLEPC+H+GR+PPCA ++ Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCANALVAA 96 >gi|164658880|ref|XP_001730565.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966] gi|159104461|gb|EDP43351.1| hypothetical protein MGL_2361 [Malassezia globosa CBS 7966] Length = 245 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 18/222 (8%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 +TL A SQD I A + ++G S N H LRA DAILVGIGTVLADDP L R Sbjct: 19 WVTLTFAQSQDGKIAGANKRPLRLSGEKSMNMTHHLRAMHDAILVGIGTVLADDPRLNVR 78 Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA-PVIIVTENDD-------PVLALAFRK 262 L+ SP +ILD H ++ + ++++ A P+++ E D A Sbjct: 79 LDNYSGLSPRPVILDCHLQMPCECRLLQRVPRADPLVLCAEPADQNARKAWETRRQALEH 138 Query: 263 KNINIIYCDCRD---------LKKLLTILVGRGVTSLLVEGGAAVAHSFIN-SRLVDSII 312 +I + +L +L + S++VEGGAAV S + L+ +I Sbjct: 139 AGAHIRTVETFTNPQGKLHLAWPSILHVLAHEQLHSVMVEGGAAVIDSILASHHLLHKVI 198 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + S + +GE G+ + D + Sbjct: 199 VTVSPVRVGEDGVGYTATPLQHAPYLQHIDTLELPPDTVFAW 240 >gi|207092337|ref|ZP_03240124.1| riboflavin biosynthesis protein [Helicobacter pylori HPKX_438_AG0C1] Length = 344 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 73/366 (19%), Positives = 126/366 (34%), Gaps = 81/366 (22%) Query: 12 SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63 L + H L NPSVAC ++ K+ ++ HAEV A + A Sbjct: 9 EMCLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTSHAEVLAAKSALKILRPH 68 Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + +TLEPC+ YG++P C+ + +RVV Sbjct: 69 LKSDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVV 128 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAV 158 + ++ + + G L+ L + I E K R +E+ + L + + Sbjct: 129 IAAEENEAKKGG--LERLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFKLALRM 186 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216 + D G ITG S H RA D +++ T+ D+P L R Q Sbjct: 187 NGDYYHG-------KITGPKSVIFTHNQRAICDTLIISGKTIRTDNPLLDTRFCDSFYQG 239 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 +P IL ++ SK+ T + + D +DL Sbjct: 240 KNPNIAILSKR-SINPSSKVFSTPNR----------------------LVNTFHDPKDLP 276 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332 + +G +EGG + S + +D ++L+ +I E + +P + Sbjct: 277 ------LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMISEAFNTLALKTPFKGR 326 Query: 333 YLEKNF 338 L Sbjct: 327 LLHAQI 332 >gi|289619581|emb|CBI53864.1| unnamed protein product [Sordaria macrospora] Length = 302 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 65/240 (27%), Positives = 107/240 (44%), Gaps = 37/240 (15%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D+ + +A ++G SK H LR++ AILVG+GT +ADDP L C Sbjct: 57 PFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRSRHAAILVGVGTAVADDPGLNC 116 Query: 210 RL-------NGLQEH---SPMRIILDPHFK--LSLDSKIIKTAL----LAPVIIVT---- 249 ++ G++E P IILDP + ++ SK+I+ A L P I V Sbjct: 117 KILSPFVAEAGVREQHPNQPRPIILDPSARWEVNEQSKVIQLARLGQGLGPFIFVAKEVS 176 Query: 250 ----ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI-- 303 E V ++ + ++ + + +L + G+ S+++EGG +V +S + Sbjct: 177 SVSEERRAVVESVGGKFVHVKSVEGEGFAWADVLRAIKKEGLDSVMIEGGGSVINSLLTL 236 Query: 304 ----NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEK---NFMCVRRDYFGSDVCL 352 LVDS+I+ + +G GG+ P + + V G DV L Sbjct: 237 EQGGEQELVDSVIVTIAPTWLGAGGVLVCPPRVIGKDGQPAPPVRLRDVSWHPLGEDVVL 296 >gi|114570085|ref|YP_756765.1| deaminase-reductase domain-containing protein [Maricaulis maris MCS10] gi|114340547|gb|ABI65827.1| bifunctional deaminase-reductase domain protein [Maricaulis maris MCS10] Length = 191 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 32/212 (15%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TLK+A S D I +A S ITG S+ VH +RA DA+L GIGT+LADDP LT Sbjct: 7 PLVTLKLATSLDGKIALANGVSQWITGPESRAVVHRMRAAHDAVLTGIGTILADDPRLTA 66 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 R G E P II+D + +++ K + +I Sbjct: 67 RPEGGCERQPDVIIMDSQGRTPATAQVFKGGDRSVTLI---------------------- 104 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS-- 327 RDL++ + +G +++E GA +A + I + LVD I +R+ +V+G G+P+ Sbjct: 105 -PHRDLERAM-----KGCERVMIEAGARIAAAAIQAGLVDRIEWFRAPMVLGGDGLPALA 158 Query: 328 --PLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 LE F V G+D+ Y Sbjct: 159 ALGLETLDKAPIFRRVGVIERGADLQETYERN 190 >gi|54022042|ref|YP_116284.1| putative reductase/deaminase [Nocardia farcinica IFM 10152] gi|54013550|dbj|BAD54920.1| putative reductase/deaminase [Nocardia farcinica IFM 10152] Length = 373 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 10/219 (4%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D + G + ++ ++V +RA+SDAILVG T+ DDP Sbjct: 1 MSGRPYVLLSAAMSLDGHLDDVGPERLRLSDAADFDRVDRVRAESDAILVGAQTLRRDDP 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R+ + P+++ + +L ++ A ++ T L Sbjct: 61 RLLVADQARRAARVAAGKPEHPLKVTVTATGRLDAGLRVWHQGG-AKLVYTTAAGAAALG 119 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ + DL LL L RGV L+VEGG V +F+ + L D + L + Sbjct: 120 DTLTGLAEVVVLGETIDLGALLDDLGARGVERLMVEGGTRVHTAFLAADLADELQLAVAP 179 Query: 318 IVIGEGGIPSPLEEG-YLEKNFMCVRRDYFGSDVCLEYI 355 +++G G P ++ + ++ G L Y+ Sbjct: 180 LLVGAAGAPRFVDPADFPDRRLTLAEVSRVGDMAVLRYL 218 Score = 86.1 bits (212), Expect = 7e-15, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 59/134 (44%), Gaps = 8/134 (5%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEA 63 D RF+ A+ + + T SV +IV DG I G + HAE AL + Sbjct: 226 ERDRRFLRRAIELAH-ASPPSPTAFSVGAVIVADGAEIATGYSRETDPKVHAEEAALNKL 284 Query: 64 ---GEEARGATAYVTLEPCSHY--GRSPPCAQFIIECGIRRVVVCVDDPDVR-VSGRGLQ 117 AT Y TLEPCS PPC I+ GI RVV+ +P V+ G++ Sbjct: 285 DPRDPRLSRATIYSTLEPCSQRATAGRPPCTDRILAAGIPRVVIAWREPSTFVVNCVGVE 344 Query: 118 WLSQKGIIVDRMME 131 L + G+ V + E Sbjct: 345 KLREHGVDVVELPE 358 >gi|317124169|ref|YP_004098281.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] gi|315588257|gb|ADU47554.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] Length = 230 Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 81/221 (36%), Gaps = 12/221 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R ++ L +S D + + + ++ ++V RA SDAILVG T+ DDP Sbjct: 1 MPERPYVLLSCGMSIDGYLDTSASKRLLLSNAADFDRVDAERAASDAILVGASTIRKDDP 60 Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + SP ++ + H L ++ ++ P + Sbjct: 61 RLLVRSPERRADRVSRGLPASPTKVTVTSHADLDCNASFFTVGETEKLVYCASEAVPEAS 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L L GRGV L+VEGG V + + L D + L + Sbjct: 121 ARLSGVATVVDAGQPCTMHHVLEDLHGRGVRRLMVEGGGTVHTQLLTADLADELQLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 +G+ + +G E+ V L Y Sbjct: 181 FFVGDSAACRFVGDGDFPWNPERRATLAEVRQIDDVVMLRY 221 >gi|317011639|gb|ADU85386.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter pylori SouthAfrica7] Length = 344 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 77/360 (21%), Positives = 130/360 (36%), Gaps = 81/360 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ V PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLAAQSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 SDLEKLEDPKILSGFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVE---KRSHITLKIAVSQ 160 ++ + + G L L + + E K R +E + + L + ++ Sbjct: 131 TEENEAKKGG--LARLKKAHVEAFTCQSLENKAKDLLLPFRIMEKKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218 D G ITG S H RA D ++V T+ DDP L R + Sbjct: 189 DYKHG-------KITGQKSAIFTHNQRATCDTLIVSGKTIRTDDPLLDARFCDGFYHNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL + +S++ AP +V +P +DL Sbjct: 242 PNIAILSKRL-TNPNSRVFS----APNRLVNTFYNP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D ++L+ VIGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDK--IDMLLLHAHASVIGESFNPFALKTPFKGRLL 328 >gi|261838779|gb|ACX98545.1| riboflavin-specific deaminase [Helicobacter pylori 51] Length = 344 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 131/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPGLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCIFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ + II + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R Q +P Sbjct: 191 CHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDALLLHSHASMISEAFNAIALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|289803145|ref|ZP_06533774.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 189 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 56/191 (29%), Positives = 84/191 (43%), Gaps = 14/191 (7%) Query: 109 VRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 +V+GRGL L Q GI + +M SE + +L R ++ LK+ S D MA Sbjct: 1 PQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMA 60 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE----------- 216 S IT ++ V LRAQS AIL TVLADDP LT R L Sbjct: 61 SGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENL 120 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 P+RI++D +++ +I++ I T+ D + R ++ + DL Sbjct: 121 RQPVRIVIDSQNRVTPAHRIVQQPGE-TWIARTQEDSHAWPDSVRTISV-PAHNGHLDLV 178 Query: 277 KLLTILVGRGV 287 L+ L + + Sbjct: 179 VLMMQLGRQQI 189 >gi|257483266|ref|ZP_05637307.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 160 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 44/160 (27%), Positives = 70/160 (43%), Gaps = 16/160 (10%) Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL----------QEHSPMRIILDPHFK 229 ++ V LRAQS +L G TVLAD LT R + L P+R+++D + Sbjct: 1 RSAVQRLRAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLR 60 Query: 230 LSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRG 286 + LD+ + ++VT + + + D DL+KL+ L RG Sbjct: 61 VPLDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMVELATRG 117 Query: 287 VTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 V +LVE G +A +F LVD ++ + +G P Sbjct: 118 VNEVLVEAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARP 157 >gi|298735524|ref|YP_003728045.1| riboflavin biosynthesis protein RibG [Helicobacter pylori B8] gi|298354709|emb|CBI65581.1| Riboflavin biosynthesis protein (RibG) [Helicobacter pylori B8] Length = 344 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 76/364 (20%), Positives = 131/364 (35%), Gaps = 77/364 (21%) Query: 12 SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63 L + + L NPSVAC ++ K ++ PHAEV A + A Sbjct: 9 EMCLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAKSALKILRPS 68 Query: 64 ----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 + +TLEPC+ YG++P C++ + +RVV Sbjct: 69 LKNDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128 Query: 102 VCVDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 + ++ + + G LQ + II + + L + Q + + L + ++ Sbjct: 129 IAAEENEAKKGGLARLQKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA + +++ T+ D+P L R Q + Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAICNTLIISGKTIRTDNPLLDARFCDHFYQNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL + +SK+ AP +V DP +DL Sbjct: 242 PNIAILSKR-SIDPNSKVFS----APNRLVNTFHDP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S N +D+++L+ +IGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWELFESLRNK--IDALLLHSHASMIGEAFSVLALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|320585803|gb|EFW98482.1| riboflavin biosynthesis protein [Grosmannia clavigera kw1407] Length = 281 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 41/246 (16%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 ++ +TL A S D+ + +A ++G SK H LR++ DAI VG+GT +ADDP L Sbjct: 30 QKPFVTLTFATSLDSSLSLAPGVRTALSGPQSKAMTHYLRSRHDAICVGVGTAVADDPGL 89 Query: 208 TCRLNG-------LQEHSPMRIILDPHFKLSL--DSKIIKTAL----LAPVIIVT-ENDD 253 CR+ + H P I++DPH + L +S+++ TA LAP I+ + D Sbjct: 90 NCRIADDTDGAASVSAHQPRPIVIDPHDRWPLAHESRVLATARRGQGLAPYIVTAVQQPD 149 Query: 254 PVLALAFRKKNINIIYC-----------------DCRDLKKLLTILVGRGVTSLLVEGGA 296 I D +L + G+ S+++EGG Sbjct: 150 AAKQKLLESHGGKYIILSTVHGSAATATAPPEPSDRFRWDDVLDSVASHGLRSIMIEGGG 209 Query: 297 AVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPL----EEGYLEKNFMCVRRDYF 346 + ++ + + LV S+I+ + + +G GG+ P+ + V+ Sbjct: 210 NIINTLLEPTNTHLVRSVIVTIAPVWLGRGGVMVSPNRVHGADNRAVPAARLADVKWQQL 269 Query: 347 GSDVCL 352 G DV L Sbjct: 270 GEDVVL 275 >gi|149916459|ref|ZP_01904977.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. AzwK-3b] gi|149809630|gb|EDM69485.1| bifunctional deaminase-reductase-like protein [Roseobacter sp. AzwK-3b] Length = 275 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 16/210 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +I S D I + ++G +H +RA D +++G+ T L D P LT Sbjct: 50 PITVAQIGQSLDGRIATVTGDARDVSGPDGLAHLHRMRALVDGVVIGVRTALHDSPRLTV 109 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RL + +P RI++DP +L D+ +++ ++I R + +I Sbjct: 110 RL--CKGPNPARIVIDPRGRLPDDAPLLRADGTRRIVI-------QAVDRPRPAGVEVIR 160 Query: 270 CDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG-- 323 + R D ++L+ L +G+++L++EGG F+ +R + + + + ++IG G Sbjct: 161 LNDRESLLDPAQILSALRAKGLSTLMIEGGGITISRFLEARRLTRLQVAVAPLLIGAGPQ 220 Query: 324 GIPSPLEEGYLEKNFMCVRRDY-FGSDVCL 352 G+ P L R + GSDV Sbjct: 221 GLTMPSPTEKLSDAIRPQTRAFSLGSDVVF 250 >gi|190346556|gb|EDK38668.2| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC 6260] Length = 281 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 99/212 (46%), Gaps = 22/212 (10%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 K+ +TL A S D+ I A I+G +K+ H +R++ DAI+VGIGTVLADDP Sbjct: 55 PHKKPFVTLTYAQSLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDP 114 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKT---------ALLAPVIIV-------T 249 +L CR SP ++LDP K S + LAP IIV T Sbjct: 115 KLNCRHEA--GKSPRPVVLDPSGKWDYKSSQLHQLVDQNTDDIKALAPYIIVRDDVDIDT 172 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN----S 305 +N+ V + +++ ++ + L ++S+++EGGA + + ++ Sbjct: 173 KNEKEVSRQGGKYIRLSLSRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLSFQKTE 232 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 + S+I+ + +GE G+ +G + + Sbjct: 233 AFIHSLIITIGPVYLGEQGVEVSPPKGVIPTD 264 >gi|32455578|ref|NP_862061.1| putative reductase [Streptomyces lividans] gi|28883229|gb|AAO61162.1| putative reductase [Streptomyces lividans] gi|89357154|gb|ABD72320.1| pQC542.16 [Streptomyces lividans] Length = 226 Score = 133 bits (335), Expect = 4e-29, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 13/225 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A S D + + ++ ++V +RA+SDAIL+G T+ D+P Sbjct: 1 MSTRPYVILSAATSVDGYLDDTSPDRLRLSNEADFDRVDQVRAESDAILIGATTMRRDNP 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R+ + P+++ + LS D K V+ V + V Sbjct: 61 RLLVNSEQRRAQRVAAGKPEYPLKVTVTASGDLSADLKFWHHGGQKLVLTVDGAAEKVRT 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + D L L RG+ L+VEGG + + L D + L + Sbjct: 121 -TLDGLADTVSVGPEFDWVLALEELGRRGIKRLMVEGGGTIHTQLMAQNLADEVHLAIAP 179 Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +++G+ L G + V + Y K Sbjct: 180 LLVGQPEAARFLGAADYPGGSTARMRVLEVRPIDDVVLIRYAPKE 224 >gi|189190852|ref|XP_001931765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973371|gb|EDU40870.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 242 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 26/199 (13%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 +TL A S D+ + +A ++G SK H LR++ DAIL+G GT +AD+P L CR Sbjct: 41 FVTLTFATSLDSQLAIAPGVQTALSGPRSKAMTHFLRSRYDAILIGAGTAIADNPSLNCR 100 Query: 211 -------LNGLQEHSPMRIILDPHFKLSLD--SKIIKTALL----APVIIVTENDDPVLA 257 P +++DPH + + SK+++ A AP I+ + N Sbjct: 101 LEGVGGYGGEGLVGQPRPVVVDPHGRWQFNEESKVLRLAKEGKGKAPYIVTSTNPPADRR 160 Query: 258 LAFRKKNINIIYCD---------CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----N 304 ++ +L L G+ S+++EGG V + F+ Sbjct: 161 ATLENVGGKFLFLGLSARDVSQAGSSWHIILDALKQEGIGSVMIEGGGFVINDFLGPSPA 220 Query: 305 SRLVDSIILYRSQIVIGEG 323 LV+S+I+ + +G+G Sbjct: 221 YSLVNSVIVTIAPTWLGKG 239 >gi|317010121|gb|ADU80701.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori India7] Length = 344 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 76/364 (20%), Positives = 127/364 (34%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 L + H L NPSVAC ++ K ++ PHAEV A + A + R Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L L + I E K R +E+ + L + ++ Sbjct: 131 TEENEAKKGG--LARLQKACIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218 D G ITG S H RA D ++V T+ D+P L R Q + Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDARFCDRFYQHKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL ++ SK+ + + D +DL Sbjct: 242 PNIAILSKRP-INPHSKVFSVPNR----------------------LVNTFHDPKDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + D+++L+ +IGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWELFESLRDKT--DALLLHSHASMIGEAFSTFALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|15920477|ref|NP_376146.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sulfolobus tokodaii str. 7] gi|15621260|dbj|BAB65255.1| 213aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 213 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 69/178 (38%), Gaps = 9/178 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +I + + D I ++ K ++H+LR + DA+LVG TV D+P+L Sbjct: 3 PYIIIFSTTTIDGRIASKD-YYSELSCPYDKMRLHILRTEVDAVLVGSNTVRIDNPKLLV 61 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDD----PVLALAFRKKNI 265 + + +P+R+ + + I II T A +KK + Sbjct: 62 KY--AKGRNPVRVTISESLNFDPNLNIFSVPPD--TIIYTTYQAYLRNEDKANELKKKGV 117 Query: 266 NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I + + L GV +L+EGG +FI D I + S + G G Sbjct: 118 KIRVLEKLSSCIIAEDLYNLGVKRILIEGGGRTIWNFIKDNCFDEIRITISPKIFGNG 175 >gi|6822155|emb|CAB71026.1| riboflavin-specific deaminase / reductase [Helicobacter pylori] Length = 344 Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats. Identities = 78/362 (21%), Positives = 129/362 (35%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLDILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ + II + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGFARLQKARIETIICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D ++V T+ D+P L R G Q +P Sbjct: 191 YHG-------KITGQKSVIFTHNQRAVCDTLIVSGKTIRTDNPLLDARFCGSFYQHKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL ++ SK+ AP +V DP +DL Sbjct: 244 IAILSKRP-INPHSKVFS----APNRLVNTFHDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D ++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFESLRDK--IDVLLLHSHASMISEAFNTLALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|149194180|ref|ZP_01871278.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus TB-2] gi|149136133|gb|EDM24611.1| Riboflavin biosynthesis protein RibD [Caminibacter mediatlanticus TB-2] Length = 326 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 65/333 (19%), Positives = 114/333 (34%), Gaps = 70/333 (21%) Query: 13 AALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEEA-------- 63 A+ + + LT NP+V +V K+ + + G PHAEV L +A Sbjct: 12 LAINEAWKYQFLTYPNPAVGASLVIKNKVFVS--AHKKAGSPHAEVNVLWDAFSFFHKTP 69 Query: 64 ----------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 A +VTLEPCSH G++P CA + + V + + DP Sbjct: 70 KFTDSFEIHEYLIKHHNNFFNEAEMFVTLEPCSHIGKTPSCANLLKVLKPKSVTIGIKDP 129 Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 ++ G++ L GI V+ + + + ++ +K L + G Sbjct: 130 -IKSHSGGVEILKNAGIEVNLLNDKRCFDLIEPFIKWSKDKFIFFKL-----AQSFNGAI 183 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPH 227 G I+ S N VH +R + D +++G TV D P L R + +P +I + Sbjct: 184 TGGY--ISSEDSLNWVHKVRDKIDLLVIGGNTVRIDRPTLDARR--VNGKAPDILIYSKN 239 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGV 287 + + K I + L + Sbjct: 240 KNFDKNIPLFKVKNRKVFI-----------------------------EDSLEEINDYKF 270 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 +++EGG + VD + + + Sbjct: 271 --IMIEGGENLYKKL--KDFVDWKVFIVTPKIF 299 >gi|296411775|ref|XP_002835605.1| hypothetical protein [Tuber melanosporum Mel28] gi|295629391|emb|CAZ79762.1| unnamed protein product [Tuber melanosporum] Length = 259 Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 102/234 (43%), Gaps = 27/234 (11%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 Q + +TL A S D+ + + P++G +K+ H LR DAILVG+GT + DD Sbjct: 21 QHTGKFFLTLTYATSLDSHLSIPLTQF-PLSGPETKSLTHHLRTFHDAILVGVGTAVVDD 79 Query: 205 PELTCRLNGLQ-EHSPMRIILDPHFK--LSLDSKIIKTA----LLAPVIIVTEN---DDP 254 P L RL G P +ILDP F+ ++ +S++++TA LAP + V D Sbjct: 80 PGLNSRLPGTPLTRQPRPVILDPAFRWGVTRESRVVQTAKRGEGLAPYVFVRSEVEIDGD 139 Query: 255 VLALAFRKKNINIIYCDCR-----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSR--- 306 + ++ + L + G+ S++VEGG V + + Sbjct: 140 ERRGILEEVGGKVVVIETLGKRRWSWDVLSEKMRAFGLNSVMVEGGGGVINDLLAEGNLP 199 Query: 307 LVDSIILYRSQIVIGEGGI---PSPLEEGYLEKN-----FMCVRRDYFGSDVCL 352 VDS+I+ + +G+GG+ PS + K F V G D + Sbjct: 200 HVDSVIVTVAPTYLGQGGVNVSPSAVLSTADGKRTSAVKFRDVEWRILGRDAVM 253 >gi|6319629|ref|NP_009711.1| Rib7p [Saccharomyces cerevisiae S288c] gi|465506|sp|P33312|RIB7_YEAST RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|396753|emb|CAA50471.1| unnamed protein product [Saccharomyces cerevisiae] gi|536482|emb|CAA85112.1| RIB7 [Saccharomyces cerevisiae] gi|642227|emb|CAA79746.1| HTP reductase [Saccharomyces cerevisiae] gi|45269317|gb|AAS56039.1| YBR153W [Saccharomyces cerevisiae] gi|285810483|tpg|DAA07268.1| TPA: Rib7p [Saccharomyces cerevisiae S288c] Length = 244 Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+I+ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|332796444|ref|YP_004457944.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Acidianus hospitalis W1] gi|332694179|gb|AEE93646.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase [Acidianus hospitalis W1] Length = 216 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 83/189 (43%), Gaps = 5/189 (2%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + ++ D + ++ K + H+LR++ DAI++G TV D+P LT Sbjct: 1 MYVIIFSTITIDGKLASKD-YYSELSCKYDKVRQHILRSEVDAIMIGGNTVRIDNPSLT- 58 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 L + +P+R+I+ ++ KI T + +++ ++K + I Sbjct: 59 -LKYVHGKNPIRVIISNSLNFDINYKIFNTPPQTIIYTSNNSENKDFENKIKEKGVIIRK 117 Query: 270 CDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 D ++ ++ L V +++EGG + S I D + + S V G G+ Sbjct: 118 LDNFNICNVMNDLESNFNVHKVMIEGGGKLIWSVIKENCFDELRVTISPRVFG-NGVSLA 176 Query: 329 LEEGYLEKN 337 EG+L KN Sbjct: 177 NGEGFLGKN 185 >gi|308183608|ref|YP_003927735.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4] gi|308065793|gb|ADO07685.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori PeCan4] Length = 344 Score = 132 bits (333), Expect = 8e-29, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 131/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + H L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEHQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 NDLEKLEDPKILSDFLKTHHNNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G L+ + II + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLKKARIETIICHNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA + ++V T+ D+P L R Q +P Sbjct: 191 HHG-------KITGPKSVIFTHNQRAICETLIVSGKTIRTDNPLLDARFCDSFYQNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL H + +SK+ AP +V DP +DL Sbjct: 244 IAILSKH-SIDPNSKVFS----APNRLVNAFYDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWELFDSLRDK--IDALLLHSHASMISEAFNAFALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|237751530|ref|ZP_04582010.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879] gi|229372896|gb|EEO23287.1| riboflavin biosynthesis protein [Helicobacter bilis ATCC 43879] Length = 397 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 72/372 (19%), Positives = 126/372 (33%), Gaps = 102/372 (27%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA------- 63 M AL ++ LT NP V L++ D +I G PHAEV A +EA Sbjct: 1 MRIALDYAWSFQTLTLPNPCVGSLVLCDNTIIALQTHKKAGSPHAEVLACKEAFLYKITH 60 Query: 64 GEEARGA------------------------------------TAY-----------VTL 76 E A+ A TAY VTL Sbjct: 61 DEVAKRAVLESCKKQGLNKDNILSYLINTLQNMQDSKHIHEFITAYHSGIFHNCEFFVTL 120 Query: 77 EPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 EPC+HYG++PPCA+ + +R+++ +D + + G L+ I + + K+ Sbjct: 121 EPCNHYGKTPPCAELLKTIAPKRIIIAHEDSTPK-ASGGANTLAHIPITHGILRDEAHKL 179 Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 ++ + + + D G+ I+ S+ H +R +D I++ Sbjct: 180 LFPFLQWQKKRNFTLFKIAHRLHGDYKNGI-------ISNEDSRIFTHNMRCIADYIIIS 232 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV---TENDD 253 T+ D+P L R + + P I++ T + Sbjct: 233 GATLRDDNPLLDTRF---------------------SLPFYQQDSINPKILILSKTMQEK 271 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN------SRL 307 + +N++II ++EGG A +S + + Sbjct: 272 DLKNYNIAHRNVSIIRSTREIPSSGFK----------IIEGGFAFLNSLLQDIETENAMP 321 Query: 308 VDSIILYRSQIV 319 +D I+ Y + Sbjct: 322 IDCIMGYIAPAF 333 >gi|302423090|ref|XP_003009375.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium albo-atrum VaMs.102] gi|261352521|gb|EEY14949.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Verticillium albo-atrum VaMs.102] Length = 203 Score = 132 bits (332), Expect = 9e-29, Method: Composition-based stats. Identities = 60/195 (30%), Positives = 92/195 (47%), Gaps = 24/195 (12%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFK--LSLDSKIIK 238 H LR++ DAI VG+GTV+ADDP L CR+ G+ + P II+DP + +S SK+++ Sbjct: 1 MTHYLRSRHDAICVGVGTVVADDPALNCRIEGVGLKKQPRPIIIDPSCRWEVSARSKVLE 60 Query: 239 TALL----APVIIVTEND-DPVLALAFRKKNINIIYCDCR-------DLKKLLTILVGRG 286 A AP +I + D DP + I + +L L G Sbjct: 61 VARAGLGLAPYVITSRWDVDPARRGLLEQHGGKFITVQMDAAGSGRFAWRDILAALHREG 120 Query: 287 VTSLLVEGGAAVAHSFIN---SRLVDSIILYRSQIVIGEGGI---PSPLEEGYL---EKN 337 + S+++EGG V +S + LVDS+I+ + +G+GG+ P +E+ Sbjct: 121 LGSVMIEGGGQVINSLLAPTSHHLVDSVIVTIAPTWLGQGGVVVSPERVEQNGTAISAAR 180 Query: 338 FMCVRRDYFGSDVCL 352 V FG DV L Sbjct: 181 LSHVSWHPFGEDVVL 195 >gi|210135672|ref|YP_002302111.1| riboflavin biosynthesis protein [Helicobacter pylori P12] gi|210133640|gb|ACJ08631.1| riboflavin biosynthesis protein [Helicobacter pylori P12] Length = 344 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 130/365 (35%), Gaps = 81/365 (22%) Query: 12 SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68 L + + L NPSVAC ++ K+ ++ PHAEV A + A + R Sbjct: 9 EMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPH 68 Query: 69 ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 +TLEPC+ YG++P C++ + +RVV Sbjct: 69 LKNDLEKLEDPKILSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128 Query: 102 VCVDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 + ++ + + G L L + I + + L + Q + + L + + Sbjct: 129 IAAEENEAKKGG--LARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRM 186 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216 + D G ITG S H RA D +++ T+ D+P L R Sbjct: 187 NGDYHHG-------KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDARFCDSFYHN 239 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 +P IL H ++ +SK+ + I+ + +DL Sbjct: 240 KNPNIAILSKH-SINPNSKVFSAPNR----------------------LVNIFNNPKDLP 276 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEG 332 + +G +EGG + S + +D ++L+ +IGE + +P + Sbjct: 277 ------LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMIGEAFSTLALKTPFKGR 326 Query: 333 YLEKN 337 L Sbjct: 327 LLHAQ 331 >gi|307638162|gb|ADN80612.1| Diamino hydroxy phosphoribosyl amino pyrimidine deaminase/5-amino-6-5-phosphoribosyl amino uracilreductase [Helicobacter pylori 908] gi|325996761|gb|ADZ52166.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-5-phosphoribosylamino uracil reductase [Helicobacter pylori 2018] gi|325998356|gb|ADZ50564.1| putative riboflavin specific deaminase [Helicobacter pylori 2017] Length = 344 Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats. Identities = 78/364 (21%), Positives = 129/364 (35%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 SDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L L + I E K R +E+ + L + ++ Sbjct: 131 AEENEAKKGG--LARLQKAHIETMICCNLENKAKDLLLPFRIMEQRGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA D +++ T+ D+P L R Q + Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL +S SK+ AP +V DP +DL Sbjct: 242 PNIAILSKR-SISPHSKVFS----APNRLVNTFHDP------------------KDLS-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D ++L+ +IGE + +P + L Sbjct: 277 ----LNKGFN--FIEGGWGLFESLRDK--IDILLLHSHASMIGEAFNTLALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|146418142|ref|XP_001485037.1| hypothetical protein PGUG_02766 [Meyerozyma guilliermondii ATCC 6260] Length = 281 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 22/212 (10%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 K+ +TL A D+ I A I+G +K+ H +R++ DAI+VGIGTVLADDP Sbjct: 55 PHKKPFVTLTYAQLLDSRIAAAPGIQTKISGPETKSMTHYIRSKHDAIMVGIGTVLADDP 114 Query: 206 ELTCRLNGLQEHSPMRIILDPHF----KLSLDSKIIKTA-----LLAPVIIV-------T 249 +L CR SP ++LDP KLS +++ LAP IIV T Sbjct: 115 KLNCRHEA--GKSPRPVVLDPSGKWDYKLSQLHQLVDQNTDDIKALAPYIIVRDDVDIDT 172 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFI----NS 305 +N+ V + ++++ ++ + L ++S+++EGGA + + + Sbjct: 173 KNEKEVSRQGGKYIRLSLLRNRLQNWHLIFDELDKLSISSVMIEGGAQIINDLLLFQKTE 232 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 + S+I+ + +GE G+ +G + + Sbjct: 233 AFIHSLIITIGPVYLGEQGVEVSPPKGVIPTD 264 >gi|330833888|ref|YP_004408616.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera cuprina Ar-4] gi|329566027|gb|AEB94132.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera cuprina Ar-4] Length = 207 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 15/214 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + ++ D + ++ K + H+LR++ DAI++G T D+P LT Sbjct: 3 PYVIISSTMTIDGRLASKD-SYSELSCKYDKIRQHVLRSEVDAIMIGANTARIDNPSLT- 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 L ++ +P+R+I+ + L + +I L II T+N++P L + + + Sbjct: 61 -LKYVKGTNPIRVIVTGNGHLDQNLRIFSVPPL--TIIYTKNENPQLENLTKNQ---VKI 114 Query: 270 CDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 ++ +L L V ++VEGG + S I VD I L S + G G+ Sbjct: 115 RKFLNICNILEDLYENFSVKKVMVEGGGKLNWSLIKENCVDEIRLTISPRIFGS-GVSVF 173 Query: 329 LEEGY---LEKNFMCVRRD--YFGSDVCLEYIGK 357 EG+ L +F ++ L YI + Sbjct: 174 DGEGFSGHLSPSFKLKEAYICQCKEEIVLTYIKR 207 >gi|149239544|ref|XP_001525648.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces elongisporus NRRL YB-4239] gi|146451141|gb|EDK45397.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Lodderomyces elongisporus NRRL YB-4239] Length = 245 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 102/206 (49%), Gaps = 19/206 (9%) Query: 137 FLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG 196 FL +YL + +TL A S D+ I ++ +K H LR++ DAILVG Sbjct: 13 FLESYLPAEKHNGPFVTLTYAQSLDSRIAAKVGVQTKLSHLETKTMTHYLRSKHDAILVG 72 Query: 197 IGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSL-DSKII----KTALLAPVIIVTE- 250 + TV ADDP+L CR P ++LDP+ K + +S++ LAP+IIV E Sbjct: 73 VNTVQADDPKLNCRYGNELRIRP--VVLDPYRKWNFANSQLCKICKDGKGLAPIIIVDEL 130 Query: 251 --------NDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300 ++D A + I + + R + + + L G+ +++VEGGA + + Sbjct: 131 VQLGESKNDEDATELNALGGEYIALPLIEKRMSNWQLIFDKLYKNGLKTIMVEGGATIIN 190 Query: 301 S-FINSRLVDSIILYRSQIVIGEGGI 325 +N LVDS+I+ + + +G+ G+ Sbjct: 191 ELLLNRDLVDSLIITVAPVFLGKEGV 216 >gi|151946542|gb|EDN64764.1| diaminohydroxyphoshoribosylaminopyrimidine deaminase [Saccharomyces cerevisiae YJM789] Length = 244 Score = 131 bits (331), Expect = 1e-28, Method: Composition-based stats. Identities = 54/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D IL+G GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPETKTMTHYLRHHHDGILIGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+I+ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|159038150|ref|YP_001537403.1| deaminase-reductase domain-containing protein [Salinispora arenicola CNS-205] gi|157916985|gb|ABV98412.1| bifunctional deaminase-reductase domain protein [Salinispora arenicola CNS-205] Length = 230 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 49/227 (21%), Positives = 86/227 (37%), Gaps = 12/227 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L AVS D I A + ++ ++V +RA DAILVG T+ DDP Sbjct: 1 MSDRPYVLLSCAVSVDGYIDDATEDRLLLSNAADVDRVDEVRAGCDAILVGAATIRKDDP 60 Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R ++ +P++ + L ++ V+ + Sbjct: 61 RLLVRSQARRDTRIHRGRPATPLKATITGRGDLDPTAQFFTAGDSTKVVYTATSALDKTC 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + DL ++L L RGV L+VEGG ++ F+ + L D + L + Sbjct: 121 ETVGTVADVVDAGEPVDLDRVLADLASRGVARLMVEGGGSMHTMFLTAGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEG----YLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 +G+ P + +G + V L Y + C Sbjct: 181 FFVGDSRAPRFVYDGCFPWSPQGRARLADVVKIEDLVLLRYALSDRC 227 >gi|167898152|ref|ZP_02485554.1| riboflavin biosynthesis protein [Burkholderia pseudomallei 7894] Length = 90 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 46/87 (52%), Positives = 55/87 (63%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 S D M+ ALR + + T NP V C+I + +G G G PHAEV AL E Sbjct: 4 FSDIDRTHMAHALRLAEQGLYTTHPNPRVGCVIARGARTLGAGWHRRAGEPHAEVHALRE 63 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCA 89 AGE ARGATAYVTLEPC+H+GR+PPCA Sbjct: 64 AGERARGATAYVTLEPCAHFGRTPPCA 90 >gi|29826479|ref|NP_828785.1| putative riboflavin-specific deaminase/reductase [Streptomyces avermitilis MA-4680] gi|29611277|dbj|BAC75320.1| putative riboflavin-specific deaminase/reductase [Streptomyces avermitilis MA-4680] Length = 226 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 47/225 (20%), Positives = 86/225 (38%), Gaps = 13/225 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L A+S D + + ++ ++V +RA+SDAIL+G T+ D+P Sbjct: 1 MTARPYVLLSAAMSVDGYLDDTSPERLRLSNAEDFDRVDQVRAESDAILIGANTMRRDNP 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R+ + P+++ + LS D V+ V + V A Sbjct: 61 RLLVNSDERRAQRVADGKPEYPLKVTVTQSGDLSADLNFWHHGGDKLVVTVDSAVEKVRA 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ + D +L L RGV L+VEGG + + + L D + L + Sbjct: 121 TLGDLADV-VGVGPELDWGLVLDELGRRGVGRLMVEGGGTIHTQLMAANLADEVHLAIAP 179 Query: 318 IVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGKN 358 +++G+ L G + V + Y K Sbjct: 180 LLVGQPEAAQFLGAADYPGGSTARMKVLEVRAIDDVVFVRYAPKE 224 >gi|15612463|ref|NP_224116.1| putative riboflavin-specific deaminase [Helicobacter pylori J99] gi|4156003|gb|AAD06964.1| putative RIBOFLAVIN-SPECIFIC DEAMINASE [Helicobacter pylori J99] Length = 344 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 75/364 (20%), Positives = 129/364 (35%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RV++ Sbjct: 71 SDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVIIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L+ L + I E K R +E+ + L + ++ Sbjct: 131 TEENEAKKGG--LERLQKAHIETIICHNLENKAKNLLLPFRVMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA D +++ T+ D+P L R + Sbjct: 189 DYHHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYHNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL +S SK+ AP +V DP +DL Sbjct: 242 PNIAILSKR-SISPHSKVF----FAPNRLVNTFHDP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + + +D+++L+ +IGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWGLFEGLRDK--IDALLLHSHASMIGEAFNTLALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|323349752|gb|EGA83967.1| Rib7p [Saccharomyces cerevisiae Lalvin QA23] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+I+ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|323310096|gb|EGA63290.1| Rib7p [Saccharomyces cerevisiae FostersO] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+I+ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|256270197|gb|EEU05420.1| Rib7p [Saccharomyces cerevisiae JAY291] gi|290878168|emb|CBK39227.1| Rib7p [Saccharomyces cerevisiae EC1118] gi|323334602|gb|EGA75976.1| Rib7p [Saccharomyces cerevisiae AWRI796] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+I+ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|323338689|gb|EGA79905.1| Rib7p [Saccharomyces cerevisiae Vin13] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+IJ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|323305972|gb|EGA59707.1| Rib7p [Saccharomyces cerevisiae FostersB] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+IJ +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIJTIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|162454006|ref|YP_001616373.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] gi|161164588|emb|CAN95893.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Sorangium cellulosum 'So ce 56'] Length = 229 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 58/222 (26%), Positives = 89/222 (40%), Gaps = 19/222 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R +TL A + D I V ++ H RA+ DA+LVGI TV+ DDP L Sbjct: 4 PRPRVTLHFAQTLDGRIAARD-QRVMLSTPAGMVCAHRARAEHDAVLVGIRTVVIDDPRL 62 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIK-----TALLAPVIIVTENDDPVLAL--AF 260 T R G + PMR++L + +++++ V++ A Sbjct: 63 TLR--GCEGRQPMRVVLASALGVPEGARLLQPPGSGQPAGGRVVVFGAAGRAPRAAQAWL 120 Query: 261 RKKNINIIYCDC-----RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 ++ +I L L L RGV LLVEGG AV SF+ +RL D + Sbjct: 121 EERGAEVIVVPADASGLVSLPHALAELHARGVRRLLVEGGGAVLTSFLRARLADRAEVEI 180 Query: 316 SQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLE 353 + +G+ IP+ G + + G +V L Sbjct: 181 APRFLGDTAIPAVGALGEAPLASAIDLREPAVELLGGNVLLR 222 >gi|207347626|gb|EDZ73736.1| YBR153Wp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 218 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+IL +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|190408694|gb|EDV11959.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Saccharomyces cerevisiae RM11-1a] gi|323356098|gb|EGA87903.1| Rib7p [Saccharomyces cerevisiae VL3] Length = 244 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 56/184 (30%), Positives = 76/184 (41%), Gaps = 8/184 (4%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D + I+ +K H LR D ILVG GTVLAD+P L C Sbjct: 30 PFVTLTYAQSLDARVSKGPGVRTIISHPDTKTMTHYLRHHHDGILVGSGTVLADNPGLNC 89 Query: 210 RL-NGLQEHSPMRIILDPHFKLSLDSK-----IIKTALLAPVIIVTENDDPVLALAFRKK 263 + +SP II+D K D IK P+++VT Sbjct: 90 KWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKEQHVDYAI 149 Query: 264 NINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHS-FINSRLVDSIILYRSQIVIG 321 D KKL IL + S++VEGGA V + + S +V+S+IL +G Sbjct: 150 CPINDTTKLVDWKKLFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLILTIGSTFLG 209 Query: 322 EGGI 325 G Sbjct: 210 SSGT 213 >gi|197106417|ref|YP_002131794.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum HLK1] gi|196479837|gb|ACG79365.1| riboflavin biosynthesis protein RibD [Phenylobacterium zucineum HLK1] Length = 143 Score = 130 bits (328), Expect = 3e-28, Method: Composition-based stats. Identities = 56/130 (43%), Positives = 74/130 (56%), Gaps = 1/130 (0%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70 M A+ +R VG T NP+V C+I+KDG V+G T GG PHAE AL +AGE ARGA Sbjct: 1 MRRAIALARPQVGRTGENPAVGCVILKDGRVLGEAATGDGGRPHAEELALAQAGEAARGA 60 Query: 71 TAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRM 129 TA+VTLEPC+ C++ + G+ RVVV DP V +G G L GI+ D+ Sbjct: 61 TAFVTLEPCAERSSGAASCSERLAAAGMSRVVVACADPSVFAAGGGAARLRAAGIVFDQG 120 Query: 130 MESEGKIFLH 139 + L+ Sbjct: 121 LLEAEAAPLY 130 >gi|299142759|ref|ZP_07035888.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] gi|298575788|gb|EFI47665.1| riboflavin biosynthesis protein RibD [Prevotella oris C735] Length = 116 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 45/113 (39%), Positives = 56/113 (49%), Gaps = 4/113 (3%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 +M L+ + NP V +IV +IG G G HAEV A E Sbjct: 4 EYYMKRCLQLAENGRQNAKLNPMVGAVIVAHDRIIGEGYHVRCGEGHAEVNAFASVRPED 63 Query: 68 R----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AT YV+LEPCSHYG++PPCA II GI+R V DP +V GRG+ Sbjct: 64 EKLLPEATIYVSLEPCSHYGKTPPCADLIISKGIKRCVCGCVDPFAKVQGRGI 116 >gi|114571043|ref|YP_757723.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10] gi|114341505|gb|ABI66785.1| riboflavin biosynthesis protein RibD [Maricaulis maris MCS10] Length = 207 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 65/149 (43%), Positives = 90/149 (60%), Gaps = 1/149 (0%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 DAR+M A+ +R G T+ NP+V C++V+DG +I G T GG PHAE AL+ AG Sbjct: 5 DDARYMDLAVALARAQQGRTAPNPAVGCVLVRDGRIIATGATQDGGRPHAERVALDAAGA 64 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG-I 124 EA GATAYVTLEPC+H+G++PPCA +I+ GI R V+ D +VSGRGL L+ G Sbjct: 65 EAAGATAYVTLEPCAHHGQTPPCADGLIQAGIERAVIACGDRFEQVSGRGLAILAAAGMT 124 Query: 125 IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 + + E++ + +R HI Sbjct: 125 VETGLRETDATSLYAGFFSRLASGLPHIM 153 >gi|108563832|ref|YP_628148.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1] gi|107837605|gb|ABF85474.1| riboflavin biosynthesis protein [Helicobacter pylori HPAG1] Length = 344 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 71/337 (21%), Positives = 116/337 (34%), Gaps = 80/337 (23%) Query: 12 SAALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR-- 68 L + + L NPSVAC ++ K+ ++ PHAEV A + A + R Sbjct: 9 EMCLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAQSALKILRPS 68 Query: 69 ---------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 +TLEPC+ YG++P C++ + +RVV Sbjct: 69 LKNDLEKLEDPKTLSDFLKTRHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVV 128 Query: 102 VCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAV 158 + ++ + + G L L + I E K R +E+ + L + + Sbjct: 129 IAAEENEAKKGG--LARLQKAHIETMICRNLENKAKDLLLPFRIMEQKGRFNLFKLALRM 186 Query: 159 SQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQE 216 + D G ITG S H RA D ++V T+ D+P L R Q Sbjct: 187 NGDYYHG-------KITGPKSVIFTHNQRAICDTLIVSGKTIRTDNPLLDTRFCDSFYQN 239 Query: 217 HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLK 276 +P IL ++ SK+ T + + D +DL Sbjct: 240 KNPNIAIL-SKCSINPSSKVFSTPNR----------------------LVNTFHDPKDLP 276 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 + +G +EGG + L D I + Sbjct: 277 ------LEKGFN--FIEGGWGLF-----EGLRDKIDV 300 >gi|146302806|ref|YP_001190122.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Metallosphaera sedula DSM 5348] gi|145701056|gb|ABP94198.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Metallosphaera sedula DSM 5348] Length = 206 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 48/211 (22%), Positives = 80/211 (37%), Gaps = 15/211 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +I + ++ D I ++ K + H+LRAQ DA+++G T D+P LT Sbjct: 3 PYIIISSTMTIDGKIAAKD-SFSELSCRYDKIRQHMLRAQVDAVMIGARTARVDNPRLT- 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 L +P+R+I+ L KI ++ T N L KK + + Sbjct: 61 -LKYYTGKNPIRVIVTNSGDLDPGLKIFNIPPS--TVVYTRNLSDSLK-ELTKKGVYVRT 116 Query: 270 CDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSP 328 L + L V +++VEGG + S + VD + + S V G G Sbjct: 117 FST--LCDAMADLYKTFSVRTVMVEGGGKLNWSLMKEGCVDEVRVTVSPRVFGS-GTSIF 173 Query: 329 LEEGYLEKN-----FMCVRRDYFGSDVCLEY 354 +G+ R G ++ L Y Sbjct: 174 DGDGFPGSMSPTLKLHSAYRCQCGEEIVLIY 204 >gi|254442809|ref|ZP_05056285.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] gi|198257117|gb|EDY81425.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Verrucomicrobiae bacterium DG1235] Length = 151 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 57/147 (38%), Positives = 75/147 (51%), Gaps = 3/147 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVG-LTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA 59 M D FM AA+ + TS NP V +IV+DG ++ +G G PHAE QA Sbjct: 1 MEQIQRDESFMRAAVCEAVRGDAVKTSPNPRVGAVIVEDGEIVAKGHFERDGGPHAERQA 60 Query: 60 LEEAGEEAR-GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 LE G + + GA YVTLEPCS GR+ C I+E GIRRVVV DP G G++ Sbjct: 61 LEALGRKPKEGAVIYVTLEPCSTQGRTGACTDAILEAGIRRVVVGASDPTEEHRGNGVRV 120 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTR 144 L G+ +V +++ E Y Sbjct: 121 LEAAGVEVVSGVLDLECSALNPGYRGH 147 >gi|50550031|ref|XP_502488.1| YALI0D06501p [Yarrowia lipolytica] gi|49648356|emb|CAG80676.1| YALI0D06501p [Yarrowia lipolytica] Length = 250 Score = 130 bits (327), Expect = 4e-28, Method: Composition-based stats. Identities = 65/214 (30%), Positives = 94/214 (43%), Gaps = 18/214 (8%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 H+TL A S D+ I I+ +K H LRA D ILVG+ T + D+P L C+ Sbjct: 29 HVTLTYAQSLDSRIAAKRDERTTISSEETKRMTHWLRAHHDGILVGVQTAIIDNPGLHCK 88 Query: 211 L-----NGLQEHSPMRIILDPHFK-----LSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 LQE SP IILDP F+ L AP+++ + A F Sbjct: 89 SFTDEDYKLQEQSPQPIILDPQFRWEFKATKLACNAAHNGYKAPIVVTKSGYEIDTAKKF 148 Query: 261 RKKNIN-----IIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILY 314 +KK I ++ D K + L G+ S++VEGGA V S + DS+++ Sbjct: 149 KKKGIEDFGGKVLMLDDFSWKSIFDALHNDCGLKSIMVEGGAHVIESMLEVGAFDSLVVT 208 Query: 315 RSQIVIGEGGIP-SPLEEGYLEK-NFMCVRRDYF 346 + +G G+ SP E L+K + RD Sbjct: 209 VGPVFLGRAGLEVSPKESVILDKVKWAAAERDSV 242 >gi|317013277|gb|ADU83885.1| riboflavin biosynthesis protein [Helicobacter pylori Lithuania75] Length = 344 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 73/364 (20%), Positives = 128/364 (35%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 L + + L NPSVAC ++ K ++ PHAEV A + A + R Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKHHEILSLETHKKAKTPHAEVLAAQSALKILRPHLK 70 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKKHHNNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L L + I E K R +E+ + L + ++ Sbjct: 131 AEENEAKKGG--LARLQKARIETMICRNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218 D G ITG S H RA D +++ T+ D+P L R + Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAICDTLIISGKTIRTDNPLLDSRFCDRFYHNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL ++ SK+ + I+ + +DL Sbjct: 242 PNIAILSKR-SINPHSKVFSAPNR----------------------LVNIFNNPKDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D+++L+ +IGE + +P + L Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMIGEAFSVFALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|315497946|ref|YP_004086750.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Asticcacaulis excentricus CB 48] gi|315415958|gb|ADU12599.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Asticcacaulis excentricus CB 48] Length = 147 Score = 130 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 D+R M+ A+ + +G T NP V C+IVKDG+VI T GG PHAE AL + Sbjct: 3 DSRHMARAIAMATAQLGRTVPNPPVGCVIVKDGVVIAEAATGDGGRPHAEEAALAQLDHR 62 Query: 67 ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI- 124 A GATAYVTLEPC C+Q ++E G+ RVV DP S G+ +S+ G+ Sbjct: 63 AEGATAYVTLEPCGARSHGGLSCSQRLVEAGVSRVVFACHDPSPFASHLGIICMSEAGLK 122 Query: 125 IVDRMMESEGKIFLHAY 141 + +M E + + Sbjct: 123 VETGLMADEAAALIADF 139 >gi|308185276|ref|YP_003929409.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180] gi|308061196|gb|ADO03092.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori SJM180] Length = 344 Score = 129 bits (325), Expect = 7e-28, Method: Composition-based stats. Identities = 76/362 (20%), Positives = 131/362 (36%), Gaps = 77/362 (21%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEAR---- 68 L + + L NPSVAC ++ K+ ++ PHAEV A + A + R Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPSLK 70 Query: 69 -------------------------GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 NDLEKLEDPKTLSDFLKTHHDNAFTDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSG-RGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 ++ + + G LQ + II + + L + Q + + L + ++ D Sbjct: 131 TEENEAKKGGLARLQKARIETIICRNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNGDY 190 Query: 163 MIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPM 220 G ITG S H RA D +++ T+ D+P L R +P Sbjct: 191 HHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDARFCDSFYHNKNPN 243 Query: 221 RIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLT 280 IL +S SK+ AP +V DP +DL Sbjct: 244 IAILSKR-SISPSSKVF----FAPNRLVNTFHDP------------------KDLP---- 276 Query: 281 ILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEK 336 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 --LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMISEAFNTLALKTPFKGRLLHA 330 Query: 337 NF 338 Sbjct: 331 QI 332 >gi|268323388|emb|CBH36976.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase [uncultured archaeon] Length = 224 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 11/174 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +R + + A+S D I I+G + +++V L+A SDAI+VGIGTVLAD+P Sbjct: 1 MERPFVFINAAMSADGKISTVARVQTRISGRVDRDRVDALKAGSDAIMVGIGTVLADNPS 60 Query: 207 LTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 LT R ++ +P+RI++D + +D++++ +I V++ V + Sbjct: 61 LTVKSRKRQEDRKQAERDENPIRIVVDSTARTPIDAEMLSKGSGKRIIAVSKRAI-VADV 119 Query: 259 AFRKKNINIIYCDCRDLKKLLTIL--VGRGVTSLLVEGGAAVAHSFINSRLVDS 310 + II C ++ + RGV L+VEGGA + S ++ LVD Sbjct: 120 DRLGEKAEIIVCGREEVDLKKLLDLLWQRGVKRLMVEGGATLNWSLVSQGLVDE 173 >gi|145595083|ref|YP_001159380.1| deaminase-reductase domain-containing protein [Salinispora tropica CNB-440] gi|145304420|gb|ABP55002.1| bifunctional deaminase-reductase domain protein [Salinispora tropica CNB-440] Length = 229 Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats. Identities = 56/227 (24%), Positives = 91/227 (40%), Gaps = 12/227 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R ++ L A S D I A + ++ +++ +RA DAILVG GTV DDP Sbjct: 1 MTERPYVLLSCATSLDGYIDDATGQRLLLSNDADLDRIDEVRAGCDAILVGAGTVRRDDP 60 Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + SP R+ + L +++ T A +I + + Sbjct: 61 RLLVRSAARRAERVARGLAASPTRVTVTGCGDLDPGARVFTTGATARLIYCATSGVEKVR 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + DL +L L RG+ LLVEGGA++ F+ S L D + L + Sbjct: 121 ERLGDIATVVHSGEPVDLAAVLADLAARGIGRLLVEGGASMHTQFLASGLADELHLVVAP 180 Query: 318 IVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYIGKNLC 360 +G+G P + +G V G + Y + C Sbjct: 181 FFVGDGRAPRFVRDGSFPWHAGHRAQIVEVRQIGDVALVRYALSDRC 227 >gi|317014921|gb|ADU82357.1| riboflavin biosynthesis protein [Helicobacter pylori Gambia94/24] Length = 344 Score = 129 bits (324), Expect = 9e-28, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 130/364 (35%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C++ + +R V+ Sbjct: 71 NDLEKLEDPKILSDFLKTRHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRAVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEK---RSHITLKIAVSQ 160 ++ + + G L L + I E K R +E+ + L + ++ Sbjct: 131 AEENEAKKGG--LARLQKAHIETIICRNLENKAKNLLLPFRIMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNG--LQEHS 218 D G ITG S H RA D +++ T+ D+P L R Q + Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDNFYQGKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL H ++ SK+ P +V ++P +DL Sbjct: 242 PNIAILSKH-SINPHSKVFS----VPNRLVNTFNNP------------------KDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D+++L+ +I E + +P + L Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDALLLHSHASMISEAFNTLALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|302552478|ref|ZP_07304820.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces viridochromogenes DSM 40736] gi|302470096|gb|EFL33189.1| diaminohydroxyphosphoribosylaminopyrimidine reductase [Streptomyces viridochromogenes DSM 40736] Length = 189 Score = 128 bits (323), Expect = 9e-28, Method: Composition-based stats. Identities = 46/189 (24%), Positives = 79/189 (41%), Gaps = 11/189 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++ ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPHPYVLLSAAVSLDGYLDDTGPERLLLSSPADFDRVDEVRASVDAILVGAGTIRADNPR 60 Query: 207 LTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L G + P+++ + L +++ T ++ T ++ A Sbjct: 61 LLVNSPGRRAARTAAGLPEYPLKVTVSGTGDLDPEARFWHTGGEK--VLYTTDEGAERAR 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A + D + LLT L RGV L+VEGG + + L D + L + Sbjct: 119 ARGLATDVVPLGAGLDWRSLLTHLHDVRGVRRLMVEGGGLIHTQLLTQGLADELQLVLAP 178 Query: 318 IVIGEGGIP 326 + +G+ P Sbjct: 179 LFVGDPAAP 187 >gi|213401993|ref|XP_002171769.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Schizosaccharomyces japonicus yFS275] gi|211999816|gb|EEB05476.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Schizosaccharomyces japonicus yFS275] Length = 244 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 60/218 (27%), Positives = 89/218 (40%), Gaps = 28/218 (12%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ------EHS 218 G G + ++G S H LRA +D I+VG TV D+P LT RL + Sbjct: 30 GKPNPGQLVLSGHESFVMTHKLRAHADGIMVGSTTVRVDNPSLTARLPDPAHDTLPLDQQ 89 Query: 219 PMRIILDPHFKLSLDS-KIIKTALL----APVIIV---TENDDPVLALAFRKKNINIIYC 270 P I++D L +S K+IK A L AP +IV TE+ + +K N+ Sbjct: 90 PRPILVDSSLSLDYESLKVIKLARLGVGKAPYVIVSPKTESAAKSDPIIEQKVNVITRVG 149 Query: 271 DCRDLKK-----------LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 ++ L L G+ L+VEGGA + + S VD+ I+ S Sbjct: 150 GKLIVRATDNTVRFHEYVALDQLRELGIRRLMVEGGARLLSHALKSECVDAAIVTISPQF 209 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + S + N+ C + FG DV E + Sbjct: 210 V---DPLSTIGIDAPSLNWPCKSWEMFGDDVVFEGRRR 244 >gi|256390088|ref|YP_003111652.1| bifunctional deaminase-reductase domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256356314|gb|ACU69811.1| bifunctional deaminase-reductase domain protein [Catenulispora acidiphila DSM 44928] Length = 230 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 86/226 (38%), Gaps = 13/226 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + +R H+ L A+S D + + ++ ++V LRA SDAI+VG T+ DDP Sbjct: 1 MPERPHVILSAAMSLDGHLDDTTPDRLMLSDDADFDRVDALRAASDAIMVGAETIRRDDP 60 Query: 206 ELTCRLNGLQE--------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L R + P+++ + L +++ T V Sbjct: 61 RLVIRDPERRADRVRRGLAEHPVKVTVTGAGALDPEARFFTTGGHKLVYCADAAVPTQAD 120 Query: 258 LAFRKKNINIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + ++ D +L L RG+ L+VEGG+++ F+ L D I L + Sbjct: 121 RLATVPDTEVVAAGALVDFPGILADLKRRGIERLMVEGGSSLHTRFLAEDLADEIHLAIA 180 Query: 317 QIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYIGKN 358 +G+ P + +N G V + Y+ ++ Sbjct: 181 PFFVGDDQAPRFVRAAEFPQNARHRMTLAETRPIGDLVFVRYVIES 226 >gi|109946711|ref|YP_663939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter acinonychis str. Sheeba] gi|109713932|emb|CAJ98940.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [Helicobacter acinonychis str. Sheeba] Length = 344 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 72/360 (20%), Positives = 128/360 (35%), Gaps = 81/360 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ V PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLEVHKKAKTPHAEVLATKSALKILRPSLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C++ + +RVV+ Sbjct: 71 IDLDQLEDPKILSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 +++ + G L+ L + + + + L + + + + L + ++ Sbjct: 131 IEENKAKKGG--LERLKKAHVEALICPSLENKARDLLLPFRIMEKKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218 D ITG S H RA ++V T+ D+P L R Q + Sbjct: 189 DY-------QHGKITGQKSAIFTHNQRAVCGTLIVSGKTIRTDNPLLDARFCDGFYQGKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL H + ++ AP +V DP +DL Sbjct: 242 PNIAILSKHP-TNSHLRVFS----APNRLVNTFHDP------------------KDLPS- 277 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 +G +EGG + S + +D ++L+ +IGE + +P + L Sbjct: 278 -----DKGFN--FIEGGWELFESLRDK--IDMLLLHSHASMIGESFSSLALKTPFKGRLL 328 >gi|296446869|ref|ZP_06888806.1| bifunctional deaminase-reductase domain protein [Methylosinus trichosporium OB3b] gi|296255640|gb|EFH02730.1| bifunctional deaminase-reductase domain protein [Methylosinus trichosporium OB3b] Length = 252 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 16/212 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 +R + ++ S D I S I+G + + +H +RA DA++VG T++ DDP+L Sbjct: 29 ERPFVVGQVGQSLDGRIATLCGESRDISGQAALDHLHRIRAHVDAVIVGARTIVLDDPQL 88 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 + R + +P R+++DP +L + + +++ E Sbjct: 89 SVRR--VPGTNPARVVIDPSGRLDSRGRWLADDGARRILVTGERSS-------VSCGAET 139 Query: 268 IYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I + ++ L RG+ +LVEGGA +F+ + +D + + + ++IG G Sbjct: 140 IRLESHAGIIPPAAIVEALFSRGLKRILVEGGARTLSTFLETGHLDRLHVLVAPMIIGSG 199 Query: 324 GIPSPLEE-GYLEKNFMCVRRDYF--GSDVCL 352 L LE R + G DV Sbjct: 200 QAGLDLPPIAKLESALRPRVRAHLLEGGDVLF 231 >gi|217076035|gb|ACJ86376.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Leuconostoc mesenteroides] Length = 122 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 55/120 (45%), Gaps = 3/120 (2%) Query: 7 DARFMSAALRFSRWHV-GLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE 65 D +M A + + T NP V ++VKDG VI G HAE+ A Sbjct: 3 DLTWMYLAADEAIRAMPYQTFENPRVGAVLVKDGQVITTPYHEKFGEAHAEINAFNRVKN 62 Query: 66 EAR--GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + GAT YVT EP S G+ A I G +RVVV DP+ +G+G++ L G Sbjct: 63 KTEFLGATLYVTFEPNSPQGKVGSWAVQIQNWGQKRVVVGKIDPNPSTNGKGIKMLRSVG 122 >gi|159042516|ref|YP_001541768.1| deaminase-reductase domain-containing protein [Caldivirga maquilingensis IC-167] gi|157921351|gb|ABW02778.1| bifunctional deaminase-reductase domain protein [Caldivirga maquilingensis IC-167] Length = 211 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 15/219 (6%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + + ++ +++ D I + T ++ R + DA +VG TV+ D Sbjct: 1 MNVKPYVIAIASITMDGKIANPYIRNR-FTCRYDLERLFKARDEVDATIVGAQTVIDVDG 59 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 T +R+++D F++ L+SK + A ++ VTE RK I Sbjct: 60 TYT----PKTGKQILRVLIDGAFRVPLESKFFNSPAPA-LVAVTERAPRAKIELARKAGI 114 Query: 266 NIIYCDC-RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 ++ D D++ LL+ L RG+ +LVEGG AV F + L+D + L + ++G+G Sbjct: 115 EVMEFDKQVDVEVLLSKLTERGIKKVLVEGGGAVFWQFFSRNLIDEVRLTIAPFMMGKG- 173 Query: 325 IPSPLEEGYLE----KNFMCVRRDY--FGSDVCLEYIGK 357 S +E L+ F V+ G +V + Y + Sbjct: 174 -TSLIEGDSLKIDQSPRFKPVKWYLCECGREVVIHYTRE 211 >gi|219113687|ref|XP_002186427.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|209583277|gb|ACI65897.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 386 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 81/206 (39%), Gaps = 49/206 (23%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGVTAYGGCPHAEVQAL 60 +S+ D F+ A+ ++ +G T NP+V C++V DG V+G+G G PHAEV AL Sbjct: 45 LSTEDEGFLRQAIECAKEGLGHTFPNPAVGCVLVNQEDGTVLGKGFHPRAGYPHAEVFAL 104 Query: 61 EEAGEEARGA-----------------------------------------------TAY 73 +A TAY Sbjct: 105 LQAAGHLEDGVAAGQAVVKKQNEQGAILNEVLRLSQQYTTDDGPEQLFEDTLAKSNVTAY 164 Query: 74 VTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 VTLEPCSHYG++PPCA + RVVV DP+ +V G G++ L + G+ VD + Sbjct: 165 VTLEPCSHYGKTPPCAVTLALAQASRVVVGFRDPNPKVDGGGVKLLREVGVAVDMAEGAL 224 Query: 134 GKIFLHAYLTRQVEKRSHITLKIAVS 159 + I S Sbjct: 225 SEACAELVTNFVKRITPRDETMINGS 250 >gi|317053384|ref|YP_004119151.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp. At-9b] gi|316953123|gb|ADU72595.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea sp. At-9b] Length = 144 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 45/115 (39%), Positives = 64/115 (55%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG 69 FM AL +SR + NP V C+IV +G+V+ +G T G HAE+ A+ Sbjct: 7 FMLLALEYSRLALPECRPNPPVGCVIVHNGVVVSKGFTQSPGHHHAEIDAISRLTFPMGE 66 Query: 70 ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 +VTLEPCS+ GR+P CA+ + E R + + ++DP R SG GL+ L GI Sbjct: 67 CDIFVTLEPCSYQGRTPSCARTLAEMKPRHIYIAIEDPHPRNSGEGLRILKNAGI 121 >gi|302868567|ref|YP_003837204.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] gi|302571426|gb|ADL47628.1| riboflavin biosynthesis protein RibD [Micromonospora aurantiaca ATCC 27029] Length = 295 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 66/199 (33%), Positives = 94/199 (47%), Gaps = 16/199 (8%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGCPHAEVQALEE 62 S+ + M A+ S +G TS NP V C+I+ + G +G G G HAEV AL Sbjct: 3 SNVELAAMRQAIILSSLGLGTTSPNPPVGCVILDRHGATVGAGYHRRKGEAHAEVNALSA 62 Query: 63 AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQK 122 AG A G TA VTLEPC+H G +P C Q +I+ GI RVV+ + DP R G L+ Sbjct: 63 AGPAALGGTAVVTLEPCNHVGVTPACRQELIDAGIARVVISLIDPTSR-GEGGAAVLTAH 121 Query: 123 GI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 GI + ++ E L +LT +R ++T A+ I+ Sbjct: 122 GIDVETNVLPDETLTVLGPWLTAIRRRRPYLTWAYALE---------GQDSQISCE---Q 169 Query: 182 QVHLLRAQSDAILVGIGTV 200 LR+ +D +L G T+ Sbjct: 170 LTAELRSGTDLVL-GEKTI 187 >gi|15617060|ref|NP_240273.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681812|ref|YP_002468198.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471514|ref|ZP_05635513.1| riboflavin reductase [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|20139386|sp|P57534|RIBD2_BUCAI RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|25403629|pir||G84983 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) [imported] - Buchnera sp. (strain APS) gi|10039125|dbj|BAB13159.1| riboflavin reductase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624655|gb|ACL30810.1| riboflavin reductase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 207 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 17/209 (8%) Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------- 217 M S IT ++ V RA+S IL T+L+D+P L R L + Sbjct: 1 MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60 Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 P+R+I+D ++ IIKT + ++ D + + I + + Sbjct: 61 IFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHNKKIN 118 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P + L Sbjct: 119 IFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEKL 178 Query: 335 E----KNFMCVRRDYFGSDVCLEYIGKNL 359 + F G D+ L K + Sbjct: 179 KISNSLQFKFKNICQIGPDIRLILSPKKI 207 >gi|85108193|ref|XP_962526.1| hypothetical protein NCU08313 [Neurospora crassa OR74A] gi|28924134|gb|EAA33290.1| hypothetical protein NCU08313 [Neurospora crassa OR74A] Length = 321 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 105/259 (40%), Gaps = 54/259 (20%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ + +A ++G SK H LR++ AILVG+GT +ADDP L Sbjct: 57 KRPFVTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHFLRSRHAAILVGVGTAVADDPGL 116 Query: 208 TCRL------------NGLQEH---SPMRIILDPHFK--LSLDSKIIKTAL----LAPVI 246 C++ NG +E P IILDP + +S SK+I+ A L P I Sbjct: 117 NCKILSPLSSSPDGVGNGKREQHPNQPRPIILDPSARWEVSEKSKVIQLARLKQGLGPFI 176 Query: 247 IVTENDDPV--------------------LALAFRKKNINIIYCDCRDLKKLLTILVGRG 286 + + V L + K + +L + G Sbjct: 177 FTAKKVEEVPEERRAVVEGIGGKYVRVEGLKVKGEGKGEGATSRESFAWVDVLRTIKEEG 236 Query: 287 VTSLLVEGGAAVAHSFI------NSRLVDSIILYRSQIVIGEGGI----PSPLEEGYLEK 336 + S+++EGG +V +S + LVDS+I+ + +G GG+ P + Sbjct: 237 LDSVMIEGGGSVINSLLSLEQAGEQELVDSVIVTIAPTWLGAGGVLVCPPRAVGRDGQPA 296 Query: 337 ---NFMCVRRDYFGSDVCL 352 V G DV L Sbjct: 297 PPVRLRDVSWQPLGEDVVL 315 >gi|310815143|ref|YP_003963107.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare Y25] gi|308753878|gb|ADO41807.1| riboflavin biosynthesis protein RibD [Ketogulonicigenium vulgare Y25] Length = 324 Score = 126 bits (317), Expect = 5e-27, Method: Composition-based stats. Identities = 78/306 (25%), Positives = 116/306 (37%), Gaps = 42/306 (13%) Query: 22 VGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQALEEA---GEEARGATAYVTLE 77 G T+ NP V C I+ G V+ G HAE A+ G + T VTLE Sbjct: 25 QGATAPNPPVGCAILDSKGAVLAVAAHQKAGSAHAEALAIAACRAAGTYDQIDTFVVTLE 84 Query: 78 PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKI 136 PC+H+GR+ PC I++ RRV + DP+ RV+G G L G+ + D Sbjct: 85 PCNHHGRTAPCTDAILQTPARRVFIGARDPNPRVAGGGTARLRAAGLAVYDWQALGMAGT 144 Query: 137 F--------LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRA 188 + + R + R IT+K V + S H +R Sbjct: 145 CTGIGADALIAPFRKRVLTGRPWITVKQVVDAGGSMIPPAGRKT-FARQSSLELAHAMRR 203 Query: 189 QSDAILVGIGTVLADDPELTCR-LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 +++ I+ G GTVLAD P T R L +H ++LD ++ ++ + A Sbjct: 204 RAEVIVTGAGTVLADWPLFTVRHLADFPDHRRALVVLDRRGRVP--TRYLTDAQTR---- 257 Query: 248 VTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 D R L L T +LVE G + + + S L Sbjct: 258 ---------------------GFDARIATDLAEALHDPRATEVLVEAGPILTDAVLQSAL 296 Query: 308 VDSIIL 313 D +L Sbjct: 297 WDQHVL 302 >gi|208435372|ref|YP_002267038.1| riboflavin biosynthesis protein [Helicobacter pylori G27] gi|208433301|gb|ACI28172.1| riboflavin biosynthesis protein [Helicobacter pylori G27] Length = 344 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 69/364 (18%), Positives = 125/364 (34%), Gaps = 81/364 (22%) Query: 14 ALRFSRWHVGLTSTNPSVAC-LIVKDGIVIGRGVTAYGGCPHAEVQALEEA--------- 63 L + + L NPSVAC ++ K+ ++ PHAEV A + A Sbjct: 11 CLNKAWEYQTLALENPSVACMVLDKNHEILSLETHKKAKTPHAEVLAAKSALKILRPHLK 70 Query: 64 --------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + +TLEPC+ YG++P C+ + +RVV+ Sbjct: 71 SDLEKLEDPKTLSDFLKTHHDNAFKDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIA 130 Query: 104 VDDPDVRVSGRGLQWLSQKGII---VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 ++ + + G L L + I + + L + Q + + L + ++ Sbjct: 131 AEENEAKKGG--LARLQKARIETMICHNLENKAKDLLLPFRVMEQKGRFNLFKLALRMNG 188 Query: 161 DNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--QEHS 218 D G ITG S H RA D +++ T+ D+P L R + Sbjct: 189 DYYHG-------KITGQKSVIFTHNQRAVCDTLIISGKTIRTDNPLLDTRFCDRFYHNKN 241 Query: 219 PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKL 278 P IL ++ SK+ + I+ + +DL Sbjct: 242 PNIAILSKR-SINPHSKVFSVPNR----------------------LVNIFNNPKDLP-- 276 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG----GIPSPLEEGYL 334 + +G +EGG + S + +D ++L+ +I E + +P + L Sbjct: 277 ----LEKGFN--FIEGGWGLFESLRDK--IDVLLLHSHASMISEAFSAFALKTPFKGRLL 328 Query: 335 EKNF 338 Sbjct: 329 HAQI 332 >gi|219682367|ref|YP_002468751.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622100|gb|ACL30256.1| riboflavin reductase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311086188|gb|ADP66270.1| riboflavin reductase [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086764|gb|ADP66845.1| riboflavin reductase [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087352|gb|ADP67432.1| riboflavin reductase [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087852|gb|ADP67931.1| riboflavin reductase [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 214 Score = 125 bits (315), Expect = 9e-27, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 83/207 (40%), Gaps = 17/207 (8%) Query: 166 MAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH-------- 217 M S IT ++ V RA+S IL T+L+D+P L R L + Sbjct: 1 MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60 Query: 218 ---SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD 274 P+R+I+D ++ IIKT + ++ D + + I + + Sbjct: 61 IFQHPIRVIIDSKNRVQPSHNIIKT--KGKIWLIRLKSDRKIWPKNTTQIIEKDHNKKIN 118 Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 + LL L + ++ +E G+ ++ +NS L+D +I+Y + ++G P + L Sbjct: 119 IFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEKL 178 Query: 335 E----KNFMCVRRDYFGSDVCLEYIGK 357 + F G D+ L K Sbjct: 179 KISNSLQFKFKNICQIGPDIRLILSPK 205 >gi|297559746|ref|YP_003678720.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296844194|gb|ADH66214.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 234 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 18/227 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R + L A+S D I G + ++ ++ LRA+ DAILVG GT+ AD+P Sbjct: 1 MDRPYTILSCAMSVDGRIDDTGPERLRLSNEADFAEIDELRAECDAILVGAGTLRADNPG 60 Query: 207 LTCRLNGLQEHSP--------MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R L+E ++ ++ + ++ T V+ Sbjct: 61 LLVRSPLLRERRRERGRTAHLLKALVTRSGEFDPAARFFSTGDAGAVVYTGGAGVDTARR 120 Query: 259 AFRKKNINIIYCDCRD------LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 A + + D ++ +L L RGV LLVEGG + F+ S LVD + Sbjct: 121 ALADRPAADPPAEVVDAGDPPTVRAVLADLADRGVGRLLVEGGGHIHTLFLTSGLVDELR 180 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEK----NFMCVRRDYFGSDVCLEYI 355 L + ++G+ P + G + V G L Y Sbjct: 181 LAVAPFLVGQEDAPRFVVPGAFPQTPDAPMRLVEARALGDVAVLRYR 227 >gi|50287537|ref|XP_446198.1| hypothetical protein [Candida glabrata CBS 138] gi|54036256|sp|Q6FU96|RIB7_CANGA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49525505|emb|CAG59122.1| unnamed protein product [Candida glabrata] Length = 244 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 61/206 (29%), Positives = 88/206 (42%), Gaps = 15/206 (7%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R +TL A S D I I+ +K H LR D IL+G GTVLADD Sbjct: 20 HRNGRPFVTLTYAQSIDAKIAKQRGVRTTISHIETKEMTHYLRYFHDGILIGSGTVLADD 79 Query: 205 PELTCRLNGL--------QEHSPMRIILDPHFKLSLDS----KIIKTALLAPVIIVTEND 252 P L C+ G +E SP IILDP K ++ + P I++T Sbjct: 80 PGLNCKWIGPNNDPDESMEEKSPRPIILDPKLKWKYSGSKMEELCNQGMGKPPIVITTKT 139 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVEGGAAVAHSFIN-SRLVDS 310 V + D K +L L + S+++EGG+ V + + S L+DS Sbjct: 140 PKVKEANVEYMIMEPDANDRISWKSILDTLRRNYDMKSVMIEGGSHVINQLLMCSDLIDS 199 Query: 311 IILYRSQIVIGEGGIP-SPLEEGYLE 335 +I+ I +G G+ SP +E L+ Sbjct: 200 LIVTIGSIYLGSEGVTVSPPDEVKLK 225 >gi|304406859|ref|ZP_07388514.1| bifunctional deaminase-reductase domain protein [Paenibacillus curdlanolyticus YK9] gi|304344392|gb|EFM10231.1| bifunctional deaminase-reductase domain protein [Paenibacillus curdlanolyticus YK9] Length = 219 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 12/203 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVP----ITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 T+ +S D + + S + +H R I+VG T+ D+P Sbjct: 1 MKTTVFSQISIDGKLTLGAGSSSKQLFTLFSNQDIEFIHQFRGHVQGIMVGKNTIHNDNP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTE---NDDPVLALAFRK 262 LT R + +P+RI+ + LDS I+ +I+ TE +DD + + R Sbjct: 61 FLTNRYE--ENKNPIRIVPTATMDIDLDSNILSDDGR-TIIVTTELGKDDDKIEQIRARG 117 Query: 263 KNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 K+ + D D +L L G+T L+VEGG + + L D IIL + I+IG Sbjct: 118 KDCIVCGHDKVDFAELFRRLESEFGITDLMVEGGGFLNWHVFDQDLADEIILMQLPIIIG 177 Query: 322 E-GGIPSPLEEGYLEKNFMCVRR 343 I EGY + F + Sbjct: 178 GADNITLADGEGYRDLAFAKKYK 200 >gi|290959312|ref|YP_003490494.1| reductase [Streptomyces scabiei 87.22] gi|260648838|emb|CBG71952.1| putative reductase [Streptomyces scabiei 87.22] Length = 385 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 48/224 (21%), Positives = 81/224 (36%), Gaps = 16/224 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 + ++ L AVS D + G + ++ ++V +RA DAIL+G GT+ D+P Sbjct: 1 MPQPYVLLSAAVSLDGFLDDTGPERLLLSSPADFDRVDEVRASVDAILIGAGTLRTDNPR 60 Query: 207 L--------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--L 256 L R+ P+++ + L ++ T V + D + L Sbjct: 61 LLVNSPERRAARVAAGLPEYPLKVTVSASGDLDPAARFWHTGGEKAVYTTDKGADRLHGL 120 Query: 257 ALAFRKKNINIIYC-DCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILY 314 L + ++ +L L GV L+VEGG V + L D I L Sbjct: 121 GLPTGPDGVTVVSVGPELAWTAVLDHLADVCGVRRLMVEGGGLVHTQLLRQDLADEIQLA 180 Query: 315 RSQIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEY 354 + + +GE P G + G V + Y Sbjct: 181 VAPVFVGEADAPRLFGTGAYPGGPRSRLRLLETRPVGDIVLIRY 224 Score = 78.8 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 8/114 (7%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQA 59 VS D ++ A + + T SV ++V DG + RG + GG P HAE A Sbjct: 235 VSPADRHWLDLACELAA-ACPPSRTAFSVGAVVVAEDGTELARGHSREGGDPVVHAEEAA 293 Query: 60 LEE---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDV 109 L + A AT Y +LEPC+ P PCA+ +++ GIRRVV +PD Sbjct: 294 LAKIDPADPRLASATVYSSLEPCARRASRPAPCARLVLDAGIRRVVTAWREPDT 347 >gi|331239010|ref|XP_003332159.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309311149|gb|EFP87740.1| hypothetical protein PGTG_13526 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 275 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 90/234 (38%), Gaps = 41/234 (17%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +R +TL A S D I A LRA+ D I+VGIGTVL DDP Sbjct: 50 CNQRPFVTLTYAQSLDGKIAGADG--------------QHLRARHDGIMVGIGTVLNDDP 95 Query: 206 ELTCRLNGLQ---EHSPMRIILDPHFKLSLDSKIIK----TALLAPVIIVTEND-DPVLA 257 +L R L P I+LD + D K+IK P +I + Sbjct: 96 QLNVRNISLTVPLAKQPQPIVLDTALRTPADCKLIKNYKNQTGKQPWLICARSAMSLQRR 155 Query: 258 LAFRKKNINIIYC------------DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I + DL+K+L + G+ L++EGGAA+ S +N Sbjct: 156 QELEAAGARVIPITNGMNAWTYKAKEGLDLEKVLEVCKLNGINRLMIEGGAAIISSILNQ 215 Query: 306 ----RLVDSIILYRSQIVIGEG-GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 +++ +I+ S ++GEG GI S + + G D Y Sbjct: 216 VSDNPILNILIVTVSPYMVGEGIGIKSSNIDSL--SLLRHLETKIMGLDAVFAY 267 >gi|328767668|gb|EGF77717.1| hypothetical protein BATDEDRAFT_5464 [Batrachochytrium dendrobatidis JAM81] Length = 185 Score = 123 bits (310), Expect = 3e-26, Method: Composition-based stats. Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 21/189 (11%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ITL A + D I + + I+ S H LRA DAILVG+ T++ D+P L+ Sbjct: 1 PKITLTYAQTFDGFIALP-GQQLAISSPQSMVLTHALRATHDAILVGVQTIICDNPSLST 59 Query: 210 RLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-------DP 254 R P +ILD H + L++K++ P I T D Sbjct: 60 RFVDYGPPPDRITPPSQPRPVILDSHLRCPLNAKVL---SRNPFIFTTTTPSTHSNSWDA 116 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL--VDSII 312 ++ + IN D+ L L + S+++EGG+ V +++ + + S+I Sbjct: 117 LIQAGAQPITINSDSTHRVDIVSALEYLHSHNIHSVMIEGGSQVIKECLSNPMLPIHSLI 176 Query: 313 LYRSQIVIG 321 + S + +G Sbjct: 177 VTVSPMFLG 185 >gi|315453509|ref|YP_004073779.1| Riboflavin biosynthesis protein [Helicobacter felis ATCC 49179] gi|315132561|emb|CBY83189.1| Riboflavin biosynthesis protein, priboflavin-specific deaminase [Helicobacter felis ATCC 49179] Length = 343 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 69/336 (20%), Positives = 119/336 (35%), Gaps = 70/336 (20%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGVTAYGGCPHAEVQALEEA------ 63 M + L + L NPSVAC+++ ++ PHAEV+AL EA Sbjct: 6 MQSCLDKAWEVQTLALPNPSVACMVLDQNYRLLSLQTHTKAHTPHAEVRALAEAFNALSA 65 Query: 64 -----------------------GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 + + T VTLEPC+H+G++PPCA + +RV Sbjct: 66 VPFPKDIDPLDKQANYNFLAQNHSDLFKECTLLVTLEPCNHFGKTPPCAALLCALKPKRV 125 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 +V + + GL+ L + GI V + L+ + ++ + + Sbjct: 126 IVGALEQHPP-AQGGLKRLQEAGIEVIVLDLPACYDLLYPFKC--------LSKRGVFNL 176 Query: 161 DNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSP 219 + I+G S N H R + +++ + D P L R P Sbjct: 177 FKIATRLDGNYQGKISGTKSLNFTHNQRGVAQTLIISGQSARTDRPLLDHRFAD-----P 231 Query: 220 MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLL 279 + D +++ S+ PVI D L L +Y +DL Sbjct: 232 LYQ--DRLCDVAILSR-------NPVI------DRSLPLFGVAGREVRLYTRVQDLP--- 273 Query: 280 TILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + G ++EGG + S +D ++ + Sbjct: 274 ---LHTGFN--IIEGGWHLLASL--QDHIDMLLTHT 302 >gi|124027442|ref|YP_001012762.1| pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus butylicus DSM 5456] gi|123978136|gb|ABM80417.1| Pyrimidine reductase, riboflavin biosynthesis, RibD [Hyperthermus butylicus DSM 5456] Length = 250 Score = 123 bits (310), Expect = 4e-26, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 6/197 (3%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 +R + + ++ D + + ++ ++ LLR +DA+++G T L DD Sbjct: 1 MTLRRPYTVIFSTMTLDGRLASSTG-YSVLSCPYDFARLRLLRGAADAVMIGANTALLDD 59 Query: 205 PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKN 264 P L RL E R+++D ++S ++++ ++ L R Sbjct: 60 PSLRKRLEPRSEKY-YRVVVDGRLRISASLRLVREPEPPVIVFTAVESQRARELEERGVR 118 Query: 265 INIIYCDCR-DLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI-- 320 ++++ + DL + L IL GV LLVEGG + +S ++SRLVD + + V Sbjct: 119 VHVVGSNGVVDLARALEILAVEYGVERLLVEGGGRLNYSLLSSRLVDEVRATITPYVFAA 178 Query: 321 GEGGIPSPLEEGYLEKN 337 G P+ G+ + Sbjct: 179 GRSFFEDPVGTGFRDTR 195 >gi|223994971|ref|XP_002287169.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220976285|gb|EED94612.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 359 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 56/215 (26%), Positives = 92/215 (42%), Gaps = 23/215 (10%) Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMRI 222 ++ S T S + VH LR +S A+LVG GTV D+ LT R G E P+R+ Sbjct: 138 DLSETKSERFTSPESLDMVHRLRRESSAVLVGRGTVEYDNCSLTVRRVELGEGEEQPVRV 197 Query: 223 ILDPHFKLS-LDSKIIKTALLAPVIIVT-ENDDPVLALAFRKKNINIIYCD--------- 271 +LDP L + I P ++ ++ + + + Sbjct: 198 VLDPSLSLLGRNYTIFSDGY--PTVVYHLQSGREEEISREERDFVTFVEMPNQISMSTDN 255 Query: 272 -----CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 + ++ L RG+ ++VEGGAA A +F+N R VD IL R+ + + P Sbjct: 256 DKEQFTLSPQGIIDDLAKRGLNHIMVEGGAATARAFLNERAVDRAILVRASVEF-QEPKP 314 Query: 327 SPLEEGYLE-KNFMCVRRDYFGSDVCLEYIGKNLC 360 + ++E L+ + GSD+ +EY +N Sbjct: 315 AQIDEDTLKAAELQMIGTTNMGSDI-VEYWSRNEL 348 >gi|219122530|ref|XP_002181596.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406872|gb|EEC46810.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 281 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 48/194 (24%), Positives = 82/194 (42%), Gaps = 20/194 (10%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSV-------PITGFISKNQVHLLRAQSDAILVGIGT 199 R IT A S D + P++G S H +RA D +L+G T Sbjct: 59 FPRPFITAAYAQSVDGKLAAYNGKEEVETTSNFPLSGSDSLLLTHAIRASHDGVLIGGKT 118 Query: 200 VLADDPELTCRLNGLQ----EHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 + D+P LT RL P I+LD H + + + ++ I+ + + Sbjct: 119 LSIDNPRLTNRLWDHDSLKLHAQPTSIVLDTHLN---NIQSLGDSMRLKHPIICCSKEAA 175 Query: 256 LALAFRKKNINIIYCDC-----RDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVD 309 + ++ ++ C C DL +L L G G+ SL++EGG + SF++ +LVD Sbjct: 176 SSCKELPSSVVLLPCRCSKNGQIDLGDMLHKLYIGYGIKSLMIEGGPTLLKSFLDDQLVD 235 Query: 310 SIILYRSQIVIGEG 323 + + + +G G Sbjct: 236 CLCITIAPKFLGSG 249 >gi|116329381|ref|YP_799101.1| pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330018|ref|YP_799736.1| pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116122125|gb|ABJ80168.1| Pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123707|gb|ABJ74978.1| Pyrimidine reductase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 217 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 89/207 (42%), Gaps = 2/207 (0%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + ++++ +A++ D + ++ K ++ +R+++D +++G ++L DDP Sbjct: 1 MTSLPNVSINMAMTLDGKVSRPDKRWYGLSSRNDKKRMDEIRSKADVLILGKNSILNDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV-TENDDPVLALAFRKKN 264 + R P +IL L D K+ + + P+I EN VL Sbjct: 61 VIHLRYV-RDIKDPRPVILLRSGTLPEDKKVFRFSKQPPLIFCLNENYSSVLDNLCSVAE 119 Query: 265 INIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 I + + ++L IL G +L+EGG ++ SF S L+ I L +IG+ Sbjct: 120 IVSLPGNDLSPLEVLKILSEMGYREILLEGGPSLNDSFFRSDLISRIYLTIVPFLIGQKD 179 Query: 325 IPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +PS NF + D S+V Sbjct: 180 LPSIAGGPKEYLNFDQKKWDLISSEVL 206 >gi|45190643|ref|NP_984897.1| AER037Cp [Ashbya gossypii ATCC 10895] gi|54036278|sp|Q757H6|RIB7_ASHGO RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|44983622|gb|AAS52721.1| AER037Cp [Ashbya gossypii ATCC 10895] Length = 246 Score = 122 bits (307), Expect = 7e-26, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 83/201 (41%), Gaps = 14/201 (6%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D I I+ +K H LR IL+G GT LADDP L C Sbjct: 29 PFVTLTYAQSLDARIAKQKGERTVISHEETKTMTHYLRYHHSGILIGSGTALADDPGLNC 88 Query: 210 RLNGL-------QEHSPMRIILDPHFKLSL-DSKI--IKTALLAPV-IIVTENDDPVLAL 258 R ++ SP IILD + SKI + I+VT + V L Sbjct: 89 RWTPAADGADCTEQSSPRPIILDVRGRWRYRGSKIEYLHNLGKGKAPIVVTGGEPEVREL 148 Query: 259 AFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHS-FINSRLVDSIILYRS 316 + + + +L L + S++VEGGA V + + +VDS+++ Sbjct: 149 GVSYLQLGVDEGGRLNWGELFERLYSEHHLESVMVEGGAEVLNQLLLRPDIVDSLVITIG 208 Query: 317 QIVIGEGGIP-SPLEEGYLEK 336 +G G+ SP EE LE Sbjct: 209 SKFLGSLGVAVSPAEEVNLEH 229 >gi|323455737|gb|EGB11605.1| hypothetical protein AURANDRAFT_15038 [Aureococcus anophagefferens] Length = 161 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 11/157 (7%) Query: 164 IGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRI 222 + G S T S + VH LR SDA+LVG+ TV DDP LT R++ + + P+R+ Sbjct: 14 VDDLGGKSGRFTSPASLDCVHRLRRGSDAVLVGVSTVARDDPSLTVRRVDPIDDAQPLRV 73 Query: 223 ILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTIL 282 ILDP+ + D+ ++ L P + + D F + + +L +L L Sbjct: 74 ILDPNGRAPRDAALLTDGL--PTAVFSRGD-------FGAVDPAVALEPFGELPTMLDAL 124 Query: 283 -VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 GV L+VEGG A +F+ + LVD ++ R+ + Sbjct: 125 ERDHGVAHLMVEGGPFTARAFLAAGLVDRAVIVRAPV 161 >gi|254292424|ref|YP_003058447.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia baltica ATCC 49814] gi|254040955|gb|ACT57750.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Hirschia baltica ATCC 49814] Length = 215 Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats. Identities = 50/153 (32%), Positives = 74/153 (48%), Gaps = 4/153 (2%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 +P D +M A+ +R +G T+ NP+VAC++V +IG T GG PHAE AL Sbjct: 4 LPEIEMDKIYMRRAIALARAQLGRTAPNPAVACVLVSGETIIGEAATGDGGRPHAEEIAL 63 Query: 61 EEA-GEEARGATAYVTLEPCSHYGRSPP-CAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E G+E ATAYVTLEPC C+ ++ G++RVV+ DP + G+ Sbjct: 64 ESLRGQELSRATAYVTLEPCHSRSNGGAGCSDRLVVSGVKRVVIAQIDPHP-TAKDGIAK 122 Query: 119 LSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRS 150 L G+ + ++E E + R Sbjct: 123 LKAAGLDVEVGLLEDEAAELTRGFFHLLETGRP 155 >gi|255718859|ref|XP_002555710.1| KLTH0G15576p [Lachancea thermotolerans] gi|238937094|emb|CAR25273.1| KLTH0G15576p [Lachancea thermotolerans] Length = 250 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 54/209 (25%), Positives = 88/209 (42%), Gaps = 15/209 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 ++ +TL A S D+ I I+ +K H LR + DAI++G GT LADDP L Sbjct: 28 QKPFVTLTYAQSLDSRISKGKGLRTTISHPETKTMTHYLRYKHDAIMIGCGTALADDPGL 87 Query: 208 TCRLNGL-----QEHSPMRIILDPHFKLSLD----SKIIKTALLAPVIIVTENDDPVLAL 258 C+ SP +I+DP K + ++ + P +IV + +L Sbjct: 88 NCKWAPAGKTSSTSSSPRPVIIDPQGKWDFEGSKMQQLFREDAGKPPVIVVRDLGSILKR 147 Query: 259 AFRKKNINIIYCDC--RDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFI-NSRLVDSIILY 314 ++ D L+ +L G S++VEGGA V + + +VDS+I+ Sbjct: 148 HPDATYVSAPSSPAGRFDWLTLMLLLKSEFGFESIMVEGGALVINQLLSRPDVVDSLIVT 207 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 +G G+ + E N V+ Sbjct: 208 VGAKYLGSEGVE--VSPPVGEVNLRNVQW 234 >gi|307083978|ref|ZP_07493091.1| putative cytidine and deoxycytidylate deaminase zinc-binding region [Mycobacterium tuberculosis SUMu012] gi|308366380|gb|EFP55231.1| putative cytidine and deoxycytidylate deaminase zinc-binding region [Mycobacterium tuberculosis SUMu012] Length = 132 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 65/122 (53%), Gaps = 3/122 (2%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALE 61 V S D M A+ S G T P V +IV +G ++G G T G HAEV AL Sbjct: 6 VKSIDEA-MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALR 64 Query: 62 EAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 AG A GA VT+EPC+HYGR+PPC +IE + VV V DP+ ++G G LS Sbjct: 65 RAGGLAAGAIVVVTMEPCNHYGRTPPCVNALIEARVGTVVYAVADPN-GIAGGGAGRLSA 123 Query: 122 KG 123 G Sbjct: 124 AG 125 >gi|241950233|ref|XP_002417839.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative; htp reductase, putative [Candida dubliniensis CD36] gi|223641177|emb|CAX45554.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Candida dubliniensis CD36] Length = 304 Score = 121 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 95/232 (40%), Gaps = 54/232 (23%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ D ILVGIGT+LADDP+L Sbjct: 42 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDCILVGIGTILADDPKL 101 Query: 208 TCRLNGL-------------QEHSPMRIILDPHFKLSLD----SKIIKT----------- 239 CR H +++DPH K +I +T Sbjct: 102 NCRYIEPIIDKGVGVGVGVGVGHQIRPVVIDPHGKWQYHQSQLCRICQTTTIQQQDNKQN 161 Query: 240 --------------ALLAPVIIVTENDDP--VLALAFRKKNINIIYCDCR-------DLK 276 A LAP II+ E+ P K+ I + Sbjct: 162 TSPPPPPPPPPPQAAGLAPFIIIDESTIPNVESEKMVNKQGGKYIKLPLLSTINVSINWV 221 Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFI---NSRLVDSIILYRSQIVIGEGGI 325 K+L L G+ S+++EGGA + + + + +L+DSII+ + + +G G+ Sbjct: 222 KILQKLYQLGLKSIMIEGGAKIINDLLSINDYKLIDSIIITIAPVFLGCNGV 273 >gi|196229635|ref|ZP_03128499.1| bifunctional deaminase-reductase domain protein [Chthoniobacter flavus Ellin428] gi|196225961|gb|EDY20467.1| bifunctional deaminase-reductase domain protein [Chthoniobacter flavus Ellin428] Length = 234 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 50/228 (21%), Positives = 91/228 (39%), Gaps = 16/228 (7%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + R +T A++ D I T K ++ +RA+ DAIL G T+ Sbjct: 1 MPRQPPRPFVTSNFAMTWDGRISTRRSTPANFTSPKDKRRLVEIRAECDAILAGAKTIAT 60 Query: 203 D-------DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 D DP L T R+ Q P+R++L ++ ++ + +P+II + P Sbjct: 61 DNMTMGLPDPALRTARVKRGQSAYPLRVLLTNSGRIDPALRVF-ESTFSPIIIFSTTRMP 119 Query: 255 VLALAF--RKKNINIIYCDCRDLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 + K ++ + +L +L L GV L+ EGGA + + +++ L+D I Sbjct: 120 ARVQSALAGKADLWLHEGPAVNLAGMLATLRADYGVKRLVCEGGAQIFRALLSAGLIDEI 179 Query: 312 ILYRSQIVIGEGGIP--SPLEEGYLEK--NFMCVRRDYFGSDVCLEYI 355 L + + G + + +L K N + + L Y Sbjct: 180 HLTLAPKIFGGIKATTITGIAGDFLPKSINAHLRSMEVIEDECFLRYR 227 >gi|29469223|gb|AAO65336.1| putative bifunctional enzyme deaminase/reductase [Streptomyces murayamaensis] Length = 226 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 15/225 (6%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R ++ L AVS D + + ++ ++V RA +DAILVG T+ D+P Sbjct: 1 MAIRPYVVLSAAVSLDGRLDDTSRDRLVLSNRRDLDRVDDERAAADAILVGATTLRRDNP 60 Query: 206 ELTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 L + P+++ + +++ ++ T + + A Sbjct: 61 RLLVASADRRARRVALGMPEHPLKVTVTGSAEVNTSYAFWHCGGEK--LVFTVDGALLRA 118 Query: 258 LAFRKKNINIIYC-DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 +++ D LL L RGV LLVEGG V + L D + L + Sbjct: 119 RRTVGDLADVVSTGPALDWHLLLDELGRRGVERLLVEGGGTVHTQLLAQDLADELHLVVA 178 Query: 317 QIVIGEGGIPSPLE----EGYLEKNFMCVRRDYFGSDVCLEYIGK 357 +++GE G P L G + G V L Y K Sbjct: 179 PLLVGEAGAPVFLGPASYPGGPAARMTLLEARPVGDVVLLRYAPK 223 >gi|298707242|emb|CBJ25869.1| conserved unknown protein [Ectocarpus siliculosus] Length = 408 Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats. Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 43/243 (17%) Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208 +TLK+A+ ++ + G T S + VH +R +A+LVG+GTV+ DDP LT Sbjct: 146 MPSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLT 205 Query: 209 CR---LNGLQEHSPMRIILDPHFKLS------LDSKIIKTALLAPVIIVTENDDPVLALA 259 R LNG Q P R++LD +L+ I++ + V +D A Sbjct: 206 VRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAA 265 Query: 260 FRKKNIN--------------------------------IIYCDCRDLKKLLTILVGRGV 287 K ++ DL +L L+ RG+ Sbjct: 266 ELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLERGI 325 Query: 288 TSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-NFMCVRRDYF 346 +LVEGG +VA F++ RLVD I+ R+ + +PS + L + V + Sbjct: 326 DHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRP-VPSDIATDTLRRAGLELVGCTKW 384 Query: 347 GSD 349 G D Sbjct: 385 GDD 387 >gi|156937747|ref|YP_001435543.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Ignicoccus hospitalis KIN4/I] gi|156566731|gb|ABU82136.1| 2,5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase [Ignicoccus hospitalis KIN4/I] Length = 221 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 71/178 (39%), Gaps = 10/178 (5%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + + S D I S ++ +H R SD +LVG T DDP L + Sbjct: 4 VVIFSTASLDGRIATKSGDSK-LSCENDLRLLHKWRCWSDLVLVGANTAKTDDPGLFVKR 62 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN---DDPVLALAFRKKNINII 268 + P+R ++D + D ++ + +++ T ++ F+ + ++ Sbjct: 63 VPCK-RQPLRGVVDGRLSVPHDLRLFREWPWTSLVVTTVEGIRNNEWKYKYFKSLGVEVL 121 Query: 269 YC---DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D + L L +GV +LVEGG + S + V+++ + V+G G Sbjct: 122 VAGKGPEVDWGRALEELGSKGVRKVLVEGGGRLNWSLLK--YVNTLEITYVGKVLGAG 177 >gi|238878329|gb|EEQ41967.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candida albicans WO-1] Length = 302 Score = 119 bits (298), Expect = 7e-25, Method: Composition-based stats. Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 61/239 (25%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ DAILVGIGT+LADDP+L Sbjct: 32 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91 Query: 208 TCRL--------NGLQEHSPMRIILDPHFKLSLDS------------------------- 234 CR H +++DP+ K Sbjct: 92 NCRYIFESVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTTKKKKNSE 151 Query: 235 ----KIIKTALLAPVIIVTENDDP--VLALAFRKKNINIIYCD-----------CRDLKK 277 + A LAP II+ E+ P K+ I + ++ Sbjct: 152 SSPVPVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-----------SRLVDSIILYRSQIVIGEGGI 325 +L L G+ S+++EGGA + + ++ +L+DS+I+ + + +G G+ Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDQKLIDSVIITIAPVFLGCNGV 270 >gi|218194431|gb|EEC76858.1| hypothetical protein OsI_15040 [Oryza sativa Indica Group] Length = 288 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 17/158 (10%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 D ++ + +R G TS NP V C++V+ G V+G G G PHAEV AL +AG Sbjct: 54 DDDGVYIRRCVELARKAAGHTSPNPMVGCVVVRGGRVVGEGFHPEAGQPHAEVFALRDAG 113 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV---------------CVDDPDV 109 + A ATAYV+LEPC+HYGR+PPC + +I ++ VVV + DP+ Sbjct: 114 DLAENATAYVSLEPCNHYGRTPPCTEALINAKVKDVVVMWGLTYERRPRSIVDGMTDPNP 173 Query: 110 RVSGRGLQWLSQKGIIVDRMMESE--GKIFLHAYLTRQ 145 V+ +G++ L GI V ME E + AY+ R Sbjct: 174 IVASKGIERLQSAGIDVRVCMEEEALCRKLNEAYIHRM 211 >gi|48477782|ref|YP_023488.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790] gi|48430430|gb|AAT43295.1| hypothetical protein PTO0710 [Picrophilus torridus DSM 9790] Length = 185 Score = 119 bits (298), Expect = 9e-25, Method: Composition-based stats. Identities = 58/205 (28%), Positives = 101/205 (49%), Gaps = 25/205 (12%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ + +A+S + I I+ + N+ LR DA+L+G GTV+ D+PEL Sbjct: 3 PYVIINVAMSLNGRISSINGSIK-ISDYYDWNRTIDLRKSVDAVLIGAGTVMVDNPEL-- 59 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 +H+ RIILD ++KL+ + K+ + P I+T D + KN+ +I Sbjct: 60 ------KHARSRIILDGNYKLNDNYKVFDGGV--PTYIITGVDVSL-------KNVIVIK 104 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 + D+K +L +L G+ S+LVEGGA V F ++L D +Y + +I G P+ Sbjct: 105 LNDLDMKNILNVLYEHGIKSILVEGGANVISQFFLNKLYDEFYIYINPGMILSG---MPV 161 Query: 330 EEGYLEK-NFMCVRRDYFGSDVCLE 353 G+ N+ ++ G + L+ Sbjct: 162 FNGFEASVNYNILK---LGDGILLK 183 >gi|238059485|ref|ZP_04604194.1| deaminase-reductase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237881296|gb|EEP70124.1| deaminase-reductase domain-containing protein [Micromonospora sp. ATCC 39149] Length = 296 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 45/179 (25%), Positives = 72/179 (40%), Gaps = 8/179 (4%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 ++ L A+S D I A + ++ ++V +RA DAILVG TV ADDP L R Sbjct: 31 YVLLSCAMSIDGYIDDATDQRLLLSNEADLDRVDAVRASCDAILVGAATVRADDPRLVIR 90 Query: 211 LNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 + SP ++ + L ++ ++ + Sbjct: 91 SPERRRERAARGLPSSPTKVTVTGSGDLDPAARFFTVGDADRIVYCATSVLAETRHRLGA 150 Query: 263 KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 D +++L L RGV L+VEGGAAV F+ + L D + L + +G Sbjct: 151 LATVADGGDPVGPRRVLADLAARGVRRLMVEGGAAVHTLFLGAGLADELHLVVAPFFVG 209 >gi|186681940|ref|YP_001865136.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] gi|186464392|gb|ACC80193.1| CMP/dCMP deaminase, zinc-binding [Nostoc punctiforme PCC 73102] Length = 143 Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats. Identities = 54/138 (39%), Positives = 72/138 (52%), Gaps = 3/138 (2%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-AGEEAR 68 FM AAL SR + NP V C+ V ++ +G T G HAE AL+ G+ Sbjct: 6 FMLAALAQSRKALPECLPNPPVGCVNVDVQEIVAQGYTQVPGKHHAEADALKRIQGKGFN 65 Query: 69 GATAYVTLEPCSHYGRSPPCAQFIIE-CGIRRVVVCVDDPDVRVSGRGLQWLSQKG-IIV 126 YVTLEPCS +GR+P CA I E C I + V + DPD R +G+GL L + G + Sbjct: 66 FLKMYVTLEPCSFHGRTPACALAIAEDCRIHEIYVSILDPDPRNNGQGLDILRKAGKTVY 125 Query: 127 DRMMESEGKIFLHAYLTR 144 + +E FL+ YL R Sbjct: 126 VGLCANEVNTFLNQYLLR 143 >gi|68489028|ref|XP_711627.1| hypothetical protein CaO19.13697 [Candida albicans SC5314] gi|68489169|ref|XP_711559.1| hypothetical protein CaO19.6341 [Candida albicans SC5314] gi|46432872|gb|EAK92335.1| hypothetical protein CaO19.6341 [Candida albicans SC5314] gi|46432945|gb|EAK92405.1| hypothetical protein CaO19.13697 [Candida albicans SC5314] Length = 304 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 57/241 (23%), Positives = 94/241 (39%), Gaps = 63/241 (26%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 KR +TL A S D+ I ++ +K H LR++ DAILVGIGT+LADDP+L Sbjct: 32 KRPFVTLTYAQSLDSKIAAQPGTQTKLSHLETKTMTHYLRSKHDAILVGIGTILADDPKL 91 Query: 208 TCRL--------NGLQEHSPMRIILDPHFKLSLDS------------------------- 234 CR H +++DP+ K Sbjct: 92 NCRYIFEPVKPNEQRILHQIRPVVIDPYGKWQYHQSQLCQICQPSTTTTTTTKKKKKNSE 151 Query: 235 ----KIIKTALLAPVIIVTENDDP--VLALAFRKKNINIIYCD-----------CRDLKK 277 + A LAP II+ E+ P K+ I + ++ Sbjct: 152 SSPVSVPVPAGLAPFIIIDESTIPNIESEKMVIKQGGKYIKLPLLLSTTTKTKISDNWRE 211 Query: 278 LLTILVGRGVTSLLVEGGAAVAHSFIN-------------SRLVDSIILYRSQIVIGEGG 324 +L L G+ S+++EGGA + + ++ +L+DS+I+ + + +G G Sbjct: 212 ILQKLYQLGLKSIMIEGGAKIINDLLSINNSTDDDDDDDDQKLIDSVIITIAPVFLGCNG 271 Query: 325 I 325 + Sbjct: 272 V 272 >gi|45659030|ref|YP_003116.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45602276|gb|AAS71753.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 222 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 4/208 (1%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP Sbjct: 1 MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 + R P +IL + D K+ + + + P+I + + ++ Sbjct: 61 VVHLRYVD-NVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENL-SSCA 118 Query: 266 NIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I+ DL K L +L G +L+EGG ++ SF LV I L +IG+ Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178 Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +PS +F + + S+ Sbjct: 179 DLPSITGGREEYLDFDLKKWNLISSETL 206 >gi|24216718|ref|NP_714199.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Lai str. 56601] gi|24198069|gb|AAN51217.1| riboflavin-specific deaminase/reductase [Leptospira interrogans serovar Lai str. 56601] Length = 222 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 40/208 (19%), Positives = 88/208 (42%), Gaps = 4/208 (1%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + ++++ +A++ D + ++ K ++ +R++++ +++G ++L DDP Sbjct: 1 MNSLPNVSVNMAMTLDGKVSRPDGRWYGLSSRNDKKRMDEIRSKAEVLILGKNSILNDDP 60 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 + R P +IL + D K+ + + + P+I + + ++ Sbjct: 61 VVHLRYVD-NVQDPRPVILVRSGTIPKDKKVFRFSKIPPLIFCLDENHHLIQENL-SSCA 118 Query: 266 NIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 I+ DL K L +L G +L+EGG ++ SF LV I L +IG+ Sbjct: 119 QIVPISGNDLSPLKALKVLSEMGYREILLEGGPSLNDSFFRLNLVSRIYLTIVPFIIGKK 178 Query: 324 GIPSPLEEGYLEKNFMCVRRDYFGSDVC 351 +PS +F + + S+ Sbjct: 179 DLPSITGGREEYLDFDLKKWNLISSETL 206 >gi|12229926|sp|Q9P4B8|RIB7_KLUMA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|9651717|gb|AAF91239.1|AF225206_5 riboflavin biosynthesis protein [Kluyveromyces marxianus] Length = 249 Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats. Identities = 63/202 (31%), Positives = 93/202 (46%), Gaps = 18/202 (8%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ++ L A S D+ I I+ +K H LR + DAI++G GTV+ DDP L C Sbjct: 30 PYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDAIMLGCGTVMIDDPGLNC 89 Query: 210 RL-------NGLQEHSPMRIILDPHFKLSL-DSKIIK----TALLAPVIIVTE-NDDPVL 256 + L SP IILDP+ K DSK+ K AP+I+V E +P Sbjct: 90 KWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGDGKAPIIVVKELPSEPEE 149 Query: 257 ALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS-RLVDSIILY 314 + + N + D +L L + V S++VEGG V + + LVD++I+ Sbjct: 150 GVDYLVMRTN--FTGKMDWSDMLVQLKSKFNVKSVMVEGGGIVINDLLQRPNLVDALIIT 207 Query: 315 RSQIVIGEGGIP-SPLEEGYLE 335 +G G+ SPL E L+ Sbjct: 208 LGATFLGSEGVEVSPLVEIKLK 229 >gi|325068552|ref|ZP_08127225.1| riboflavin biosynthesis protein RibD [Actinomyces oris K20] Length = 181 Score = 117 bits (294), Expect = 3e-24, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 63/142 (44%), Gaps = 30/142 (21%) Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEH----SPMRIILDPHFKLSLD 233 +++ H LR Q DAI+VG GT LADDP LT R Q P+R+++ L Sbjct: 2 AARHDAHRLRRQCDAIMVGTGTALADDPALTVRDEAGQPAPAHLQPLRVVVGSR-SLPAT 60 Query: 234 SKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVE 293 S+++ + + D + +L +L R + +L+E Sbjct: 61 SRVLADD-------------------------HYLLLPDHDPRAVLAVLAEREIRHVLLE 95 Query: 294 GGAAVAHSFINSRLVDSIILYR 315 GG +A +F+ + LVD ++ Y Sbjct: 96 GGPTLATAFLRAGLVDQVVAYT 117 >gi|289208457|ref|YP_003460523.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio sp. K90mix] gi|288944088|gb|ADC71787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thioalkalivibrio sp. K90mix] Length = 262 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 6/205 (2%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 ++ S D I S +TG +H LRA D ++VG GTV+ADDP LT R Sbjct: 52 TVAQLGQSLDGRIATQSGHSQYVTGPEDIEHLHRLRALVDGVVVGAGTVVADDPRLTVR- 110 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCD 271 + P+R+ILDP ++ ++++ + + +++ E P + + + D Sbjct: 111 -KAEGVHPVRVILDPDGRIQPNARVFQDGEVKTLVVHAEGHGPCDMPDNVECMVMPVDAD 169 Query: 272 CR-DLKKLLTIL-VGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG--GIPS 327 R L L G+ LLVEGG F+ S +D + L + ++IG G GI Sbjct: 170 GRFAPPALRDRLAAEHGLHRLLVEGGGRTVSRFLASDTLDRLHLTIAPMLIGSGRHGITL 229 Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCL 352 P + + R G D Sbjct: 230 PEIDTLDQALRPPCRIFRLGGDTLY 254 >gi|300236|gb|AAC60554.1| riboflavin biosynthesis [Saccharomyces cerevisiae] Length = 183 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 48/152 (31%), Positives = 65/152 (42%), Gaps = 8/152 (5%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSK----- 235 H LR D ILVG GTVLAD+P L C+ +SP II+D K D Sbjct: 1 MTHYLRHHHDGILVGSGTVLADNPGLNCKWGPDPAANSPRPIIIDTKQKWRFDGSKMQEL 60 Query: 236 IIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEG 294 IK P+++VT D KKL IL + S++VEG Sbjct: 61 FIKRQGKPPIVVVTSEPIIKEQHVDYAICPINDTTKLVDWKKLFEILKEEFNIRSVMVEG 120 Query: 295 GAAVAHS-FINSRLVDSIILYRSQIVIGEGGI 325 GA V + + S +V+S+I+ +G G Sbjct: 121 GANVINQLLLRSDIVNSLIITIGSTFLGSSGT 152 >gi|134107195|ref|XP_777728.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260424|gb|EAL23081.1| hypothetical protein CNBA6060 [Cryptococcus neoformans var. neoformans B-3501A] Length = 198 Score = 116 bits (292), Expect = 4e-24, Method: Composition-based stats. Identities = 52/195 (26%), Positives = 79/195 (40%), Gaps = 30/195 (15%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H LRA DAILVG+ T++ DDP L L P +ILDP + L S+I+ Sbjct: 3 MTHHLRAIHDAILVGVHTLVLDDPRLQTNLLPPSHASPPPQPLILDPSLRFPLTSRILNE 62 Query: 240 ----------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284 L P I+ + + ++ L +IL Sbjct: 63 WNTKPALRGRTLKQPWILCGPDVSSDRIHEVEQAGARVVPVPLDPNGRIPPSSLPSILTS 122 Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 G+ S++VEGG+ V SF++ S+LVDS+++ + IG+GG E Sbjct: 123 LGLRSVMVEGGSRVLSSFLHTLKRDDGSKLVDSVVVTVAPTFIGQGG------EDKGLPG 176 Query: 338 FMCVRRDYFGSDVCL 352 V + G D + Sbjct: 177 LQTVHTETMGKDTVM 191 >gi|156841575|ref|XP_001644160.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM 70294] gi|156114796|gb|EDO16302.1| hypothetical protein Kpol_1053p40 [Vanderwaltozyma polyspora DSM 70294] Length = 242 Score = 116 bits (291), Expect = 6e-24, Method: Composition-based stats. Identities = 55/184 (29%), Positives = 81/184 (44%), Gaps = 10/184 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D I I+ +K H LR D ILVG GTVLADDP L C Sbjct: 29 PFVTLTYAQSIDARIAAQKGERTVISHEETKTMTHYLRYHHDGILVGTGTVLADDPGLNC 88 Query: 210 RLN-GLQEHSPMRIILDPHFKLSLD-SKI----IKTALLAPVIIVTENDDPVLALAFRKK 263 + E+SP II+D K SK+ + P+++V ++P+ + Sbjct: 89 KWGKNCFENSPKPIIIDLKQKWKFTGSKLHQLYLNNQGKNPIVVVA--NEPINKEEHVEY 146 Query: 264 NINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFI-NSRLVDSIILYRSQIVIG 321 D LL L + S++VEGGA V + + S L++S+I+ +G Sbjct: 147 LTIPTTNGKFDWGLLLNALKTNFNLNSIMVEGGAVVINQLLTESHLINSLIVTIGSTYLG 206 Query: 322 EGGI 325 G+ Sbjct: 207 NLGV 210 >gi|254471099|ref|ZP_05084502.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Pseudovibrio sp. JE062] gi|211960241|gb|EEA95438.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Pseudovibrio sp. JE062] Length = 275 Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats. Identities = 49/220 (22%), Positives = 95/220 (43%), Gaps = 11/220 (5%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 + ++ + ++ S D I S ++ + +H LRA DA++VG+GT Sbjct: 60 FAPLCQAQKQFVIGQLGQSVDGRIATVTGDSNYVSCSEALIHLHRLRALCDAVVVGVGTA 119 Query: 201 LADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 +AD+P+LT R + P RI++DP+ ++ DS +++ ++I + Sbjct: 120 VADNPQLTVR--HVSGRHPARIVIDPYGRMPRDSTLLQDNSTRRIVITRTDAHARYPEGV 177 Query: 261 RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 + ++ L R +LVEGGA FI +++D + L + ++I Sbjct: 178 ECFQLQPDAKGRLSCAEIRHAL--REFRCILVEGGAWTLSRFIELKMIDRLHLMIAPLII 235 Query: 321 GEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNLC 360 G G P L+ ++ +R DV +G ++ Sbjct: 236 GSG--PRGLQLPAIDYLAQAIR-----PDVTWHLLGVDML 268 >gi|154245980|ref|YP_001416938.1| deaminase-reductase domain-containing protein [Xanthobacter autotrophicus Py2] gi|154160065|gb|ABS67281.1| bifunctional deaminase-reductase domain protein [Xanthobacter autotrophicus Py2] Length = 282 Score = 114 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 4/187 (2%) Query: 139 HAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIG 198 Y +R + ++ S D I S I G + + +H LRA DA++VG+G Sbjct: 36 AIYHPIHKGERPFVVAQLGQSLDGRIATPSGESKYINGPHALDHLHALRADVDAVVVGVG 95 Query: 199 TVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 TV+ADDP LT R + SP R+I+DP + ++ +++ +A Sbjct: 96 TVVADDPLLTVRR--VAGRSPARVIIDPSGRADPAARCFAPDGARRLVLRRTGVAAPVAE 153 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + + + +L L RG+T +LVEGGA +F+ + +D++ ++ S + Sbjct: 154 GVEV--VAMEGAGAFEPAAMLDALAARGLTRILVEGGAHTLSAFLEAGCLDALHVFVSPV 211 Query: 319 VIGEGGI 325 ++G G I Sbjct: 212 ILGAGRI 218 >gi|254570505|ref|XP_002492362.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia pastoris GS115] gi|238032160|emb|CAY70110.1| Diaminohydroxyphoshoribosylaminopyrimidine deaminase [Pichia pastoris GS115] gi|328353625|emb|CCA40023.1| hypothetical protein PP7435_Chr3-1080 [Pichia pastoris CBS 7435] Length = 243 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 62/198 (31%), Positives = 91/198 (45%), Gaps = 27/198 (13%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +TL A S D+ I I+ +KN LR++ DAILVG+ TVLADDP L C Sbjct: 22 PFVTLTYAQSLDSRIAAKKGERTVISHQETKNMTQYLRSKHDAILVGVKTVLADDPGLNC 81 Query: 210 RLNGLQEHSPMR-IILDPHFKLSLDSKIIK-------TALLAPVIIVTEN-DDPVLALAF 260 +L +P+R IILDP F+L +K PV I + P L Sbjct: 82 KLG-----TPIRPIILDPTFQLLSKIASLKLIKLGLSGEGEPPVFITRKGVVSPDLQANL 136 Query: 261 R-KKNINIIYCDCRDLK-------KLLTILVGRGVTSLLVEGGAAVAHSFI--NSR---L 307 R I+I+ RD+ +L IL + S++VEGGA + + + L Sbjct: 137 RSDYGISIVEIADRDVHRGKMSWFAILKILKDAEIHSVMVEGGATIINDLLICRQNSVPL 196 Query: 308 VDSIILYRSQIVIGEGGI 325 V S+I+ + +G+ G+ Sbjct: 197 VASLIITVGPVYLGKDGV 214 >gi|303280045|ref|XP_003059315.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459151|gb|EEH56447.1| predicted protein [Micromonas pusilla CCMP1545] Length = 146 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 63/146 (43%), Positives = 84/146 (57%), Gaps = 2/146 (1%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIG-RGVTAYGGCPHAEVQALEEAGE 65 D +M AL + G T NP V C++V D + G G PHAEV AL AG+ Sbjct: 1 DKAYMRRALELAATATGQTHPNPLVGCVVVNDDGDVVGEGYHPKAGEPHAEVFALRAAGD 60 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 ARGATAYV+LEPC H+GR+PPC++ +++ G+RRVVV DPD RVSG G++ L GI Sbjct: 61 AARGATAYVSLEPCDHFGRTPPCSRALVDAGVRRVVVGFVDPDPRVSGGGIRTLLDAGIE 120 Query: 126 VDRMMES-EGKIFLHAYLTRQVEKRS 150 V E + ++ R +KR Sbjct: 121 VTVGCEEAACREINADFIARNTKKRR 146 >gi|50311993|ref|XP_456028.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|54036251|sp|Q6CJ61|RIB7_KLULA RecName: Full=5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|49645164|emb|CAG98736.1| KLLA0F21120p [Kluyveromyces lactis] Length = 252 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 87/204 (42%), Gaps = 15/204 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 +++ ++ L A S D I I+ + H LR + D I++G GTVL DDP Sbjct: 28 QEKPYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFDGIMLGCGTVLVDDPG 87 Query: 207 LTCRL--------NGLQEHSPMRIILDPHFKLSLDSK----IIKTALLAPVIIVTENDDP 254 L C+ EHSP IILDP+ K + + + I+V + Sbjct: 88 LNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDSGDGKAPIVVVKKLPE 147 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINS-RLVDSII 312 V+ + + D L L + G+ S++VEGG V + + L+D+++ Sbjct: 148 VVEENVDYLVMQTNFTGKVDWHDLFIQLKSQFGLKSIMVEGGGIVINDLLQRPHLIDALV 207 Query: 313 LYRSQIVIGEGGIP-SPLEEGYLE 335 + +G G+ SPL E L+ Sbjct: 208 ITVGATFLGSEGVEVSPLIEINLK 231 >gi|321249886|ref|XP_003191610.1| hypothetical protein CGB_A7040W [Cryptococcus gattii WM276] gi|317458077|gb|ADV19823.1| Hypothetical protein CGB_A7040W [Cryptococcus gattii WM276] Length = 198 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 30/192 (15%) Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKT 239 H LRA DAIL+G+ T++ DDP L L P +ILDP + L S+I+ Sbjct: 3 MTHQLRAIHDAILIGVHTLVLDDPRLQTNLLPPTHASPPPQPLILDPSLRFPLTSRILNE 62 Query: 240 ----------ALLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-----DLKKLLTILVG 284 L P I+ N + ++ L +IL Sbjct: 63 WNTKPAMRGQTLKQPWILCGSNVPSERINEVEQAGARVVPVPLDSDGRIPPSSLPSILTS 122 Query: 285 RGVTSLLVEGGAAVAHSFIN-------SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKN 337 G+ S+++EGG+ V SF++ S+LVD++++ + IGEGG E Sbjct: 123 LGLRSVMIEGGSRVLSSFLHTLKRDDGSKLVDTVVVTVAPTFIGEGG------EDRGLPA 176 Query: 338 FMCVRRDYFGSD 349 V + G D Sbjct: 177 LQTVHTETMGKD 188 >gi|212536738|ref|XP_002148525.1| riboflavin biosynthesis protein Rib7, putative [Penicillium marneffei ATCC 18224] gi|210070924|gb|EEA25014.1| riboflavin biosynthesis protein Rib7, putative [Penicillium marneffei ATCC 18224] Length = 351 Score = 113 bits (284), Expect = 4e-23, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 97/304 (31%), Gaps = 101/304 (33%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 TL A S D+ + +A ++G SK H LR + +AIL+G+GT +ADDP L C Sbjct: 41 PFTTLTFATSLDSSLSLAPGVRTTLSGPQSKAMTHYLRFRHEAILIGVGTAIADDPGLNC 100 Query: 210 RLNGLQE------HSPMRII-------------------LDPHFKLSLDSKIIK------ 238 R+ G P I +D + + Sbjct: 101 RIEGASGYEEQTSPPPDPAIQALAVEASSNLELKDLTKAVDSSQASPEQLRPFQNHIDRV 160 Query: 239 ----------------------------------------TALLAPVIIVTENDDP--VL 256 AP +I+++ P Sbjct: 161 QMENIRQRQASLHQPRPIIIDPNARWEPRESRKIIALVKQGKGKAPFVIISKLTSPPDEA 220 Query: 257 ALAFRKKNINIIYCDCR----------------DLKKLLTILV-GRGVTSLLVEGGAAVA 299 K I D D +L +L + S+++EGG ++ Sbjct: 221 RELLEKYGGKYIALDTVTSNNPDDSVDAAHQHFDWNVILNVLATKENIKSIMIEGGGSII 280 Query: 300 HSFINSR----LVDSIILYRSQIVIGEGG-IPSPLEE------GYLEKNFMCVRRDYFGS 348 +S ++ + L+DS+I+ + +G+GG + SP V+ FG Sbjct: 281 NSLLSEQRYSALIDSVIVTIAPTWLGQGGVVVSPQRRVDSYGCAIPASRLTDVKWHPFGE 340 Query: 349 DVCL 352 DV L Sbjct: 341 DVVL 344 >gi|225569894|ref|ZP_03778919.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM 15053] gi|225161364|gb|EEG73983.1| hypothetical protein CLOHYLEM_05989 [Clostridium hylemonae DSM 15053] Length = 159 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 ++S D +FM A++ + L T + C+IV +G +IGRG T HAE+ Sbjct: 1 MNSVDEKFMKEAIKQAGKAYALNET--PIGCVIVYEGRIIGRGYNRRNTDKNTLAHAEIT 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + G T YVTLEPC P CA I++ + RVVV +P +G Sbjct: 59 AIRKASRKMGDWRLEGCTLYVTLEPC------PMCAGAIVQSRMDRVVVGCMNPKAGCAG 112 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L L +G + + E + ++ Sbjct: 113 SVLNVLQTEGFNHQTELTTGVCGGECSSMMKSFF 146 >gi|219115761|ref|XP_002178676.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217410411|gb|EEC50341.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 299 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 57/211 (27%), Positives = 84/211 (39%), Gaps = 29/211 (13%) Query: 170 GSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHF- 228 S+ T + + VH LR SDA+LVG GTV AD+P LT R + P+R++LDP Sbjct: 81 ESLRFTCGEALDMVHRLRCCSDAVLVGRGTVQADNPSLTVRRTPC-DRQPLRVVLDPRLE 139 Query: 229 ----KLSLDSKIIKTALLAPVIIVTENDDP-------------VLALAFRKKNINIIYCD 271 K ++ ++ D V + N+ + D Sbjct: 140 LLRQKTDQGARFALLEDGLTTVVYHTVPDLDEDSLNLLETITVVYVPPTKPSGDNVPHGD 199 Query: 272 CRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLE 330 L L R GV L+VEGG A F+ VD +IL + + PLE Sbjct: 200 YLSAATLTRDLRDRFGVNHLMVEGGPLTARQFLYEHQVDRVILVHASLCF-----RQPLE 254 Query: 331 EGYLEKNFMCVRRDYFGSDVC----LEYIGK 357 G EK + + G++ C +EY + Sbjct: 255 SGLTEKVLVDAGLEKLGTEPCGVDQIEYWSR 285 >gi|223935243|ref|ZP_03627161.1| bifunctional deaminase-reductase domain protein [bacterium Ellin514] gi|223896127|gb|EEF62570.1| bifunctional deaminase-reductase domain protein [bacterium Ellin514] Length = 244 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 85/224 (37%), Gaps = 18/224 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------L 201 + + L IA + D + A VP + + LR ++DA++ G TV + Sbjct: 12 RFPFVYLNIATTADGKLAPANRKFVPFGSKRDHDHLLELRTEADAVMSGARTVDLFPVNM 71 Query: 202 ADDPELTCRL---NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 P R+ NGL E++ +RI++ L S+I K +I+ +E Sbjct: 72 GPGPAKYRRMRLKNGLAEYN-LRIVVSGSGSLDPRSEIFKHRFSPIIILTSERAPESRLK 130 Query: 259 AFRKKNINIIYCDCR--DLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 R ++ C + D K L+ L + VT LL EGG V + + LVD I L Sbjct: 131 KLRALADEVMVCGGKEVDFKAALSWLREKWAVTRLLCEGGGEVNDALFRADLVDEIHLTL 190 Query: 316 SQIVIGEGGIPSPLEEGY-----LEKNFMCVRRDYFGSDVCLEY 354 V G P+ + G ++ L Y Sbjct: 191 CPWVFGGRNAPTMADGRGARTLADANQIKMKSEKRIGDELFLVY 234 >gi|167753725|ref|ZP_02425852.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216] gi|167658350|gb|EDS02480.1| hypothetical protein ALIPUT_02006 [Alistipes putredinis DSM 17216] Length = 360 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 52/186 (27%), Positives = 80/186 (43%), Gaps = 14/186 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +T+ AVS D + + ++ +VH LRA DAILVG T+ D+P L Sbjct: 1 MKVTVSTAVSADGYLDDRSPDRLILSTPEDWAEVHRLRAACDAILVGAETIRRDNPSLLV 60 Query: 210 --------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R++ P+++ L +LS ++ T I+ T DP Sbjct: 61 GDEVLRRERIDRGLSPDPVKVTLTASCRLSPEANFF-TRGDQEKIVFTSCSDP----GPL 115 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-I 320 ++ +I ++T L RG+ SLLVEGGAA F LVD+ L + V + Sbjct: 116 RQVATVIPAAEITAALIVTELEKRGLRSLLVEGGAATLRMFFAENLVDTFRLAVNPAVKV 175 Query: 321 GEGGIP 326 G+ P Sbjct: 176 GDPRAP 181 Score = 90.3 bits (223), Expect = 4e-16, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 60/129 (46%), Gaps = 6/129 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV-TAYGGCPHAEVQAL-- 60 ++ D R++ A+ SR TS+ V +I+ I G HAE +A+ Sbjct: 214 TAEDRRYLQMAIDESRKCTPSTSSY-CVGAVILTTDRKIFTGYTHETSPTHHAEQEAILK 272 Query: 61 -EEAGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 AG E RGAT Y ++EPCS P C++ II RRVV + +PD V +G Sbjct: 273 ALAAGVELRGATIYSSMEPCSERKSEPESCSELIIRHEFRRVVFALYEPDCFVCCQGALN 332 Query: 119 LSQKGIIVD 127 L + I V Sbjct: 333 LRRHRIEVS 341 >gi|317121275|ref|YP_004101278.1| bifunctional deaminase-reductase domain protein [Thermaerobacter marianensis DSM 12885] gi|315591255|gb|ADU50551.1| bifunctional deaminase-reductase domain protein [Thermaerobacter marianensis DSM 12885] Length = 252 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 10/186 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R ++ + + + D + M PI + + LRA DA+L G GTV A D Sbjct: 27 PPHRPYVLINMVTTVDGKVTMGRGTVKEPIGSKVDHALMARLRAPVDAVLRGAGTVRAYD 86 Query: 205 PELTC-------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 R P+ +++ L LD++ + A P+++ Sbjct: 87 VPPRVPDEYAERRQARGLPAQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPAEKV 146 Query: 258 LAFRK-KNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A R+ ++ + +++ L +L R G+ LL EGG AV + + + +VD + Sbjct: 147 EAVRQVADVAFAGEEKVEMRAALALLRERYGIRRLLSEGGPAVNFAMLEAGVVDELFWTV 206 Query: 316 SQIVIG 321 + ++G Sbjct: 207 APKIVG 212 >gi|90579814|ref|ZP_01235622.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14] gi|90438699|gb|EAS63882.1| Putative cytosine/adenosine deaminase [Vibrio angustum S14] Length = 175 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 M V D FM A+ + V ++V +G V+G G + HAE Sbjct: 4 MEVEPNDEYFMRRAIELAAKAE--EEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAE 61 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +AG+ T YVTLEPC P CA ++ C + +VV DD Sbjct: 62 IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 +G + LS G+ ++ E + L A+ R Sbjct: 116 AGSTMNLLSYDGVNHHVEQTSGVLVEECRAQLQAFFKR 153 >gi|183220792|ref|YP_001838788.1| riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910892|ref|YP_001962447.1| pyrimidine deaminase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167775568|gb|ABZ93869.1| Pyrimidine deaminase, riboflavin biosynthesis [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779214|gb|ABZ97512.1| Riboflavin biosynthesis protein RibD [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 430 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 67/371 (18%), Positives = 129/371 (34%), Gaps = 79/371 (21%) Query: 17 FSRWHVGLTSTNPSVACLIVKD-GIVIGRGVTAYGGCPHAEVQ------------ALEEA 63 +G T NP V+ ++ G I + T G HAE + ++ Sbjct: 16 LGFLAMGKTGGNPPVSAVLTNSIGEPIEKAHTQGYGGNHAERELYSLVEQKHSHSQIQTD 75 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 V+LEPC+H+G++PPC +++ + +++ DP+ V + ++G Sbjct: 76 ENSLSDTILSVSLEPCTHFGKTPPCRDLVLQHKPKELLLGWKDPNPMVQSGDWKLYLEQG 135 Query: 124 --IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKN 181 + +D M+ + +L +L R + + +K A S + ++ Sbjct: 136 TKVRLDPMLANTSLPYLQGFLKRMQTGKPWVWIKSATSTEGNYVSKSFTKERVSSIEMDL 195 Query: 182 QVHLLRAQSDAILVGIGTVLADDPELTCRLN----------------------------- 212 + LLRA+ DA+ VG T D+P L R+ Sbjct: 196 YLQLLRAKFDAVAVGPNTTKVDEPSLHFRITEEMIQSVAPCKRETELVPFFEAATNLFSS 255 Query: 213 --------------GLQEHSPMRI-ILDPHFKLSLDSKIIKTALLAPVI--------IVT 249 + + P R+ +LDP+ ++ D K L + ++T Sbjct: 256 LCRWTKESVTIHQLEEERYQPYRVFVLDPN-RMPSDHFFTKQRELNERLGKKLCLFFLLT 314 Query: 250 EN----------DDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299 + + N ++I + + L L G+ +LL E G+ Sbjct: 315 NSIKKKDNLFGISSQMKETLESLSNTHLISVNQDEGDLFLKTLGKLGINTLLCEAGS-FF 373 Query: 300 HSFINSRLVDS 310 +F+ D Sbjct: 374 PNFLKESFTDE 384 >gi|294630170|ref|ZP_06708730.1| riboflavin/cytosine deaminase [Streptomyces sp. e14] gi|292833503|gb|EFF91852.1| riboflavin/cytosine deaminase [Streptomyces sp. e14] Length = 422 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 47/261 (18%), Positives = 80/261 (30%), Gaps = 51/261 (19%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 ++ L AVS D + G + ++G ++V +RA DAILVG GT+ AD+P Sbjct: 1 MPLPYVLLSAAVSLDGYLDDTGPDRLLLSGPADFDRVDEVRASVDAILVGAGTLRADNPR 60 Query: 207 LTCRLNGLQEHS--------PMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L + P+++ + +L ++ T V + + Sbjct: 61 LLVNSPERRAARIAAGRPEYPLKVTVSASGELDPRARFWHTGGAKAVYTTDAGAERLRRT 120 Query: 259 AFRKKNIN-----------------------------------------IIYCDCRDLKK 277 + D + Sbjct: 121 GLAPATAPTDQPPPTPPAPTDQPSPTPPTPPAQPGAETRSQAETGPVHIVPLGPELDWHR 180 Query: 278 LLTILVG-RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG-YLE 335 LL L GV L+VEGG + + +L D + L + + +G+ P G Y Sbjct: 181 LLEHLHDVFGVRRLMVEGGGTIHTQLLQRQLADEVQLVLAPLFVGDPAAPRLFGPGPYQR 240 Query: 336 KNFMCVRRDYFGSDVCLEYIG 356 V V + Y Sbjct: 241 GRLRLVETRAIEDVVLMRYEP 261 Score = 82.2 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 44/137 (32%), Positives = 64/137 (46%), Gaps = 9/137 (6%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCP--HAEVQALE 61 D ++ A + ++T SV ++V DG + RG + G P HAE AL Sbjct: 272 PADRHWLRIACELALL-CPPSATAFSVGAVVVAADGTELARGHSREAGDPVAHAEEAALA 330 Query: 62 E---AGEEARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVR-VSGRGL 116 + A GAT Y +LEPC+ P PCA+ I++ G+RRVV +PD + G Sbjct: 331 KIDPADPRLPGATVYSSLEPCARRASRPRPCARLILDAGVRRVVTAWREPDTFVEAADGA 390 Query: 117 QWLSQKGIIVDRMMESE 133 L+ G V + E E Sbjct: 391 GVLADAGAEVVVLPEFE 407 >gi|225376320|ref|ZP_03753541.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM 16841] gi|225211696|gb|EEG94050.1| hypothetical protein ROSEINA2194_01960 [Roseburia inulinivorans DSM 16841] Length = 166 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 70/156 (44%), Gaps = 23/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56 M ++ D ++M AA+R ++ L + C+IV+DG +I RG HAE Sbjct: 1 MKMT-QDEKYMKAAIREAKKAYALDEV--PIGCVIVQDGTIIARGYNRRNTEGNTLAHAE 57 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A ++ T YVTLEPC CA I++ +++VV+ +P Sbjct: 58 LTAIKKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIATMNPKAGC 111 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G L L I ++E E + L + Sbjct: 112 AGSVLNLLQMAAFNHQVEIEKGVLEEECSMMLSDFF 147 >gi|89073121|ref|ZP_01159660.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34] gi|89051074|gb|EAR56531.1| Putative cytosine/adenosine deaminase [Photobacterium sp. SKA34] Length = 175 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 64/158 (40%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 M V D FM A+ + V ++V +G V+G G + HAE Sbjct: 4 MQVEQNDEHFMRRAIELAAKAE--EEGEVPVGAVVVYNGRVVGEGWNRSIGQHDATAHAE 61 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL +AG+ T YVTLEPC P CA ++ C + +VV DD Sbjct: 62 IMALRQAGKVLENYRLIDTTLYVTLEPC------PMCAGAMVHCRVGKVVYGADDLKTGA 115 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 +G + LS G+ ++ E + L A+ R Sbjct: 116 AGSTMNLLSYDGVNHHVEQTSGVLVEECRAQLQAFFKR 153 >gi|313901432|ref|ZP_07834892.1| bifunctional deaminase-reductase domain protein [Thermaerobacter subterraneus DSM 13965] gi|313468303|gb|EFR63757.1| bifunctional deaminase-reductase domain protein [Thermaerobacter subterraneus DSM 13965] Length = 252 Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 10/186 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSV-PITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 R ++ + + + D + M PI + + LRA DA+L G GTV A D Sbjct: 27 PPHRPYVLVNMVSTVDGKVTMGRGAVQEPIGSKVDHGLMARLRAPVDAVLRGAGTVRAYD 86 Query: 205 --PELTCRLNGLQE-----HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 P + ++ P+ +++ L LD++ + A P+++ Sbjct: 87 VPPRVPAEYAERRQARGLPPQPLPVVITGSCDLPLDARFFREAPRRPLVLTRRAAPADKV 146 Query: 258 LAFRK-KNINIIYCDCRDLKKLLTILVGR-GVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 A R+ ++ + +++ L +L R G+ LL EGG V + + + +VD + Sbjct: 147 EAVRQVADVAFAGEEQVEMRAALALLRERYGIQRLLSEGGPTVNFAMLEAGVVDELFWTV 206 Query: 316 SQIVIG 321 + + G Sbjct: 207 APKIAG 212 >gi|162456661|ref|YP_001619028.1| riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce 56'] gi|161167243|emb|CAN98548.1| Riboflavin biosynthesis protein ribD [Sorangium cellulosum 'So ce 56'] Length = 187 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGGC---PHAEVQ 58 +S+ ++M A+ + G T NP V C IV G ++G G T G A + Sbjct: 1 MSNDPEKWMRLAIEEAERARGGTGDNPWVGCAIVSAAGELLGSGHTLGPGEDHAEIAAAR 60 Query: 59 ALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A G GAT Y TLEPCS +GR+P C++ I+E G+ RVV+ ++DP+ RV G G++ Sbjct: 61 AAHARGLSVVGATLYSTLEPCSFHGRTPACSRSIVERGVARVVIGMNDPNPRVDGEGVRI 120 Query: 119 LS-QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 L +V+ + E+E + L +++ + D + Sbjct: 121 LREGGVEVVEGVCEAEIRRQLGSWVIEHHPHEPLRRGLAFPASDRV 166 >gi|323487362|ref|ZP_08092661.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163] gi|323399323|gb|EGA91722.1| tRNA-specific adenosine deaminase [Clostridium symbiosum WAL-14163] Length = 184 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 71/156 (45%), Gaps = 23/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAE 56 M ++ D ++M AA+R ++ L + C+IV +G +IGRG HAE Sbjct: 28 MKMTD-DEKYMRAAIREAKKAYAL--GEVPIGCVIVFEGKIIGRGYNRRIADKNVLSHAE 84 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A ++ G T Y+TLEPC P CA I++ I +V++ +P Sbjct: 85 INAIKKACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGC 138 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G + L +KG ++ E L + Sbjct: 139 AGSVMNLLDEKGFNHQVETEIGILGEECSGMLKEFF 174 >gi|327393622|dbj|BAK11044.1| diaminohydroxyphosphoribosulpyrimidine deaminase ribD [Pantoea ananatis AJ13355] Length = 124 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 37/104 (35%), Positives = 52/104 (50%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCA 89 V C+IV DG V+ +G T G HAE+ A+ + YVTLEPCS GR+P CA Sbjct: 6 PVGCVIVHDGEVVAKGFTQPPGQHHAEIDAIAKLTFPISECEIYVTLEPCSFQGRTPSCA 65 Query: 90 QFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 I E + + + +DDP + G G L + GI + + Sbjct: 66 LTIAELKPKHIYIAMDDPHPKNRGAGRTILKKAGISFTSGIGKQ 109 >gi|163802511|ref|ZP_02196404.1| molecular chaperone DnaK [Vibrio sp. AND4] gi|159173812|gb|EDP58627.1| molecular chaperone DnaK [Vibrio sp. AND4] Length = 178 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58 S D RFM A+ + V ++VKDG +I G + HAE+Q Sbjct: 6 FSPQDERFMRRAMELAEQAE--AEGEVPVGAVLVKDGKIIAEGWNRSICSHDATAHAEIQ 63 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AGE T YVTLEPC P CA ++ ++RVV D +G Sbjct: 64 TLRKAGETLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E+E + L A+ R Sbjct: 118 TVLNLFESQAAYHYATVESGLLENECRTQLQAFFKR 153 >gi|257075687|ref|ZP_05570048.1| hypothetical protein Faci_01419 [Ferroplasma acidarmanus fer1] Length = 189 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 18/174 (10%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 +I + +A+S + I I+ I +V +R D +L+G +V D+P L Sbjct: 3 PYIIINVAMSLNGKISAINGRYR-ISNDIDMTRVMDIRKNVDGVLLGANSVKVDNPVLN- 60 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 + RIILD F+L+ + + + I ++N+ + KN II Sbjct: 61 -----YAKN--RIILDEKFRLNDNYHVFDGKSKS--YIFSKNNKKI-------KNAEIII 104 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 D + +L L G+ S+LVEGG+ V + FI+ ++ D ++ + +I +G Sbjct: 105 LDDLSITSILKKLYDMGIKSILVEGGSNVINQFIDEKIFDEFYIFINPGLILDG 158 >gi|289675579|ref|ZP_06496469.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase, C-terminal [Pseudomonas syringae pv. syringae FF5] Length = 178 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 19/167 (11%) Query: 199 TVLADDPELTCRLNGL----------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIV 248 TVLAD LT R + L +P+R+++D ++ LD+ + ++V Sbjct: 2 TVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPFFQAGSA---LVV 58 Query: 249 TENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 T + + + D DL++L+ L RGV +LVE G +A +F Sbjct: 59 TCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLVEAGPRLAGAFARL 118 Query: 306 RLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCVRRDYFGSD 349 LVD L+ + +G P PL + + G+D Sbjct: 119 GLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIMEMRAVGND 165 >gi|207739573|ref|YP_002257966.1| hypothetical protein RSIPO_04273 [Ralstonia solanacearum IPO1609] gi|206592953|emb|CAQ59859.1| putative 3.5.4.25 protein [Ralstonia solanacearum IPO1609] Length = 242 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 12/217 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 I L A S D + A + ++ + RAQSDAI VG T+ AD+P LT Sbjct: 1 MRIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTV 60 Query: 210 RLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R L P+++ + L ++ + +++ L + Sbjct: 61 REPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYA 120 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 I + + +L RGV L VEGG V F++ + D L + +G Sbjct: 121 GLACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVG 180 Query: 322 EGGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354 G + + +F V R G ++Y Sbjct: 181 RAGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 217 >gi|126666387|ref|ZP_01737366.1| bifunctional deaminase-reductase-like protein [Marinobacter sp. ELB17] gi|126629188|gb|EAZ99806.1| bifunctional deaminase-reductase-like protein [Marinobacter sp. ELB17] Length = 301 Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 91/209 (43%), Gaps = 10/209 (4%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 + ++ S D I S I G +H +RA SDA++VG GT +AD+P+LT R Sbjct: 84 VIGQLGQSLDGRIATVSGHSRFINGDDGIVHLHRIRALSDAVVVGAGTAVADNPQLTVRR 143 Query: 212 NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK-NINIIYC 270 +P+R+++D ++ + + +V + P + ++ + C Sbjct: 144 T--SGDNPVRVVIDRRRRVPASHHLFTDNAAPTLRLVAGDYQPGPKPKLQGLTSVLEVPC 201 Query: 271 DCRD-----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGI 325 + ++L +L G+ + +EGG +F+ ++L+D + + + ++IG G Sbjct: 202 LGHNQQPVCPAQILAVLADFGLHKIFIEGGGVTVSAFLRAQLLDRLHVMVAPMIIGSGRP 261 Query: 326 PSPLEEGYLEKNFMCVRRDY--FGSDVCL 352 L E + + R GSD+ Sbjct: 262 AFTLPEIDQLDDALRPRATMVNLGSDMLF 290 >gi|83748799|ref|ZP_00945813.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551] gi|83724552|gb|EAP71716.1| Possible pyrimidine reductase [Ralstonia solanacearum UW551] Length = 256 Score = 110 bits (275), Expect = 4e-22, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 78/217 (35%), Gaps = 12/217 (5%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 I L A S D + A + ++ + RAQSDAI VG T+ AD+P LT Sbjct: 15 MRIHLSAACSIDGYMDAASDARLVLSSPEDLLDIQRERAQSDAIFVGAETIRADNPRLTV 74 Query: 210 RLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R L P+++ + L ++ + +++ L + Sbjct: 75 REPPLIAQRIRRGLPPQPIKVTVTTTGNLDPNAHFFRQGAQEKIVLCPSAIAADLQSCYA 134 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 I + + +L RGV L VEGG V F++ + D L + +G Sbjct: 135 GLACVIGLDGPICARGIANVLQRRGVQPLFVEGGTRVLSMFVSEAVFDRFRLAIAPCFVG 194 Query: 322 EGGIPSPLE--EGYLEKNFMCV--RRDYFGSDVCLEY 354 G + + +F V R G ++Y Sbjct: 195 RAGASRLQLWHDRMWDPSFRLVAARVRLLGGTTVVDY 231 >gi|197302614|ref|ZP_03167668.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC 29176] gi|197298196|gb|EDY32742.1| hypothetical protein RUMLAC_01343 [Ruminococcus lactaris ATCC 29176] Length = 180 Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats. Identities = 41/150 (27%), Positives = 68/150 (45%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62 D ++M AL+ ++ L T + C+IV +G +I RG HAE+ A+++ Sbjct: 22 DEKYMKEALKQAKKAYALEET--PIGCVIVHEGKIIARGYNRRNTDKSPLAHAEISAIKK 79 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC CA II+ I RVVV +P +G L Sbjct: 80 ASKKLGDWRLEECTLYVTLEPCQM------CAGAIIQSRIPRVVVGCMNPKAGCAGSVLN 133 Query: 118 WL-----SQKGIIVDRMMESEGKIFLHAYL 142 L + + + +++E E + + + Sbjct: 134 LLDVQAFNHQAEVKTKVLEEECSLMMKQFF 163 >gi|323694203|ref|ZP_08108379.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum WAL-14673] gi|323501676|gb|EGB17562.1| cytidine and deoxycytidylate deaminase [Clostridium symbiosum WAL-14673] Length = 155 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60 + D ++M AA+R ++ L + C+IV +G +IGRG HAE+ A+ Sbjct: 2 TDDEKYMRAAIREAKKAYAL--GEVPIGCVIVFEGKIIGRGYNRRIADKNVLSHAEINAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ G T Y+TLEPC P CA I++ I +V++ +P +G Sbjct: 60 KKACKKMGDWRLEGCTMYITLEPC------PMCAGAIVQARIPKVLIGSMNPKAGCAGSV 113 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 + L +KG ++ E L + Sbjct: 114 MNLLDEKGFNHQVETEIGILGEECSGMLKEFF 145 >gi|254509189|ref|ZP_05121287.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16] gi|219547894|gb|EED24921.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 16] Length = 187 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D ++M A+ + T V ++VKDG +I G G HAE+Q Sbjct: 13 FTPQDEQYMRRAMELAAHAE--TEGEVPVGAVLVKDGEIIAEGWNQSIGCHDATAHAEMQ 70 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++RVV D +G Sbjct: 71 TIRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 124 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L + + ++E E ++ L ++ R Sbjct: 125 TVLNLFEHQAAYHYADVEQGLLEEECRVQLQSFFKR 160 >gi|153853556|ref|ZP_01994936.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814] gi|149753711|gb|EDM63642.1| hypothetical protein DORLON_00926 [Dorea longicatena DSM 13814] Length = 169 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 68/156 (43%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M + S D ++M A++ ++ + + C+IV +IGRG HAE Sbjct: 1 MNMQSTDEKYMKEAIKQAKKAYAI--GEVPIGCVIVYQDKIIGRGYNRRTIDNNTLAHAE 58 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A ++ T YVTLEPC C+ I++ + RVVV +P Sbjct: 59 LIAIKKASKKMNDWRLEDCTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGC 112 Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 +G L L + + + +ME E + ++ Sbjct: 113 AGSILNLLDIPEFNHQVELTTGVMEEECSQMMKSFF 148 >gi|253580414|ref|ZP_04857679.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251848144|gb|EES76109.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 181 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEA 63 RFM A+R ++ L + C+IV +G +I RG HAE+ A+ +A Sbjct: 14 ERFMKEAIRQAKKAEAL--EEVPIGCVIVHEGKIIARGYNRRNTDKNTLSHAELNAIRKA 71 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ G T YVTLEPC C+ +++ I VV+ + +G + Sbjct: 72 SKKLGDWRLEGCTMYVTLEPCQM------CSGALVQSRIDEVVIGCMNAKAGCAGSVMNL 125 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L G I+ ++E E L + + Sbjct: 126 LQVDGFNHQVKIIQGVLEEECSSMLSEFFRK 156 >gi|262395051|ref|YP_003286905.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25] gi|262338645|gb|ACY52440.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. Ex25] Length = 182 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 63/157 (40%), Gaps = 22/157 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P + D FM A+ + V ++VKDG +I G G HAE+ Sbjct: 5 PFTPQDELFMRRAMVLAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSIGTNDATAHAEI 62 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AG++ T YVTLEPC P CA ++ ++RVV D + Sbjct: 63 QTLRKAGQKIENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAA 116 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 G L ++ ++E E + L A+ R Sbjct: 117 GTVLNLFESQAAYHYALVEKGLLEDECRTQLQAFFKR 153 >gi|262402782|ref|ZP_06079343.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586] gi|262351564|gb|EEZ00697.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC586] Length = 170 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + L V ++V++G +I G T HAE++ Sbjct: 6 FSTQDEQFMRRAIELAAQAEAL--GEVPVGAVLVQEGKIIAEGWNCSITHQDATAHAEIE 63 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + EAG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 VIREAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 + + + ++E E + L A+ R Sbjct: 118 TVMDLFNSQASYHYATVEKGLLEEECRTQLQAFFQR 153 >gi|153834810|ref|ZP_01987477.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01] gi|148868738|gb|EDL67812.1| tRNA-specific adenosine deaminase [Vibrio harveyi HY01] Length = 177 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58 S D FM A+ + V ++VKDG +I G A+ HAE+Q Sbjct: 6 FSPQDELFMRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSICAHDATAHAEIQ 63 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++RVV D +G Sbjct: 64 TLRKAGKALGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + + ++E E + L A+ R Sbjct: 118 TVLNLFESQAAYHYATVENGLLEEECRSQLQAFFKR 153 >gi|291537693|emb|CBL10805.1| Cytosine/adenosine deaminases [Roseburia intestinalis M50/1] Length = 154 Score = 107 bits (267), Expect = 4e-21, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 65/152 (42%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60 + D ++M AA+R ++ L + C+IV+D +I RG HAE+ A+ Sbjct: 2 NQDEKYMKAAIRQAKKAYALDEV--PIGCVIVQDDKIIARGYNRRNTEGNTLAHAELTAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC CA I++ +++VV+ +P +G Sbjct: 60 RKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSV 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + I ++ E L + Sbjct: 114 LNLLQMQQFNHQVEIEKGVLGEECSAMLSTFF 145 >gi|119510845|ref|ZP_01629970.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414] gi|119464524|gb|EAW45436.1| riboflavin-specific deaminase [Nodularia spumigena CCY9414] Length = 242 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 80/239 (33%), Gaps = 29/239 (12%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + R H T+ +A+S D I K + A SDA+L+G GT+ A Sbjct: 1 MHNRPHTTVVLAMSADGKIADFRRSPARFGSGADKAHLEEQIAASDAVLIGAGTLRAYGT 60 Query: 206 ELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND----- 252 LT R+ G + P+ I++ ++ + K + + ++ T Sbjct: 61 TLTVSQPILLQHRIKGGKPAQPVHIVITQSADINPEIKFFQQPIERWLLTTTMGAGSWQR 120 Query: 253 ------------DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAH 300 F + I D L L +T L + GG + Sbjct: 121 REQTLHSTGLTPARECPPKFEQMIIFDTPTGKVDTSAALQHLASLHITRLAILGGGELVA 180 Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYI 355 S + L+D + L +++G P+P+E F + +V L Y Sbjct: 181 SMLQLDLIDELWLTVCPLILGGASAPTPVEGVGFLSQFAPKLELLEVHQVEQEVFLHYR 239 >gi|315180919|gb|ADT87833.1| zinc-binding domain protein [Vibrio furnissii NCTC 11218] Length = 189 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 22/157 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P S D +FM A+ + V ++VKDG +I G G HAE+ Sbjct: 7 PFSPEDEQFMRRAMALAEQAE--AEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AGE T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 G L S + ++E E + L A+ R Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQR 155 >gi|6572110|emb|CAB63093.1| riboflavin-specific deaminase [Bartonella quintana] Length = 87 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 1/88 (1%) Query: 277 KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK 336 +L +L RG+ S+L+EGG F+N+ VD +I + + +++G+ I +P YL + Sbjct: 1 AILRLLYQRGINSVLLEGGVKTGEKFLNAGCVDHLICFYAPVILGKDRIEAPHFGNYLSQ 60 Query: 337 NFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 F V FG+D C ++ K LC QEL Sbjct: 61 -FYEVETRMFGNDRCYKWRRKTLCSQEL 87 >gi|54307981|ref|YP_129001.1| putative cytosine/adenosine deaminase [Photobacterium profundum SS9] gi|46912407|emb|CAG19199.1| Putative cytosine/adenosine deaminase [Photobacterium profundum SS9] Length = 171 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 22/172 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 + D ++M A+ + V ++V +G V+G G + HAE+ AL Sbjct: 8 NHDEQYMRRAIELA--SQAEAEGEVPVGAVVVYNGQVVGEGWNRSIGQHDATAHAEMMAL 65 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +AG+ + AT YVTLEPC P CA ++ I +V+ D +G Sbjct: 66 RQAGKVVQNYRLLDATLYVTLEPC------PMCAGAMVHSRIGKVIFGASDLKTGAAGSV 119 Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + L + +++ E + L A+ R+ ++ + DN Sbjct: 120 MNLLSYDEVNHHVDCQSGVLDEECRAQLQAFFKRRRAEKKAEKKARQAALDN 171 >gi|17231595|ref|NP_488143.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120] gi|17133238|dbj|BAB75802.1| riboflavin-specific deaminase [Nostoc sp. PCC 7120] Length = 227 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 83/225 (36%), Gaps = 15/225 (6%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 V+ R H T+ +A+S D I + K + A SDA+L+G GT+ A Sbjct: 1 MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEQQIAASDAVLIGAGTLRAYG 60 Query: 205 PELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 LT R + P+ I++ L+ + + + + ++ T Sbjct: 61 TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIR-RWLVTTTLGQNFW 119 Query: 257 ALAFRKKNINIIYCDCRDLKKL--LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + I + ++ + + L + LLV GG A+ S + L+D L Sbjct: 120 QGRSEFERIMVFETPTGEIDTITAIEQLTSLQIARLLVLGGGALIASMLELDLIDEFWLT 179 Query: 315 RSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355 +++G P+P++ L + + +V L Y Sbjct: 180 VCPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVAHEVFLHYR 224 >gi|153830778|ref|ZP_01983445.1| zinc-binding domain protein [Vibrio cholerae 623-39] gi|148873734|gb|EDL71869.1| zinc-binding domain protein [Vibrio cholerae 623-39] Length = 193 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRRAIALATQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDTERKN 191 >gi|261212078|ref|ZP_05926364.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341] gi|260838686|gb|EEX65337.1| tRNA-specific adenosine-34 deaminase [Vibrio sp. RC341] Length = 170 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 64/161 (39%), Gaps = 25/161 (15%) Query: 1 MP---VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCP 53 MP S D +FM A+ + V ++V+DG +I G T + Sbjct: 1 MPESQFSPQDEQFMRRAITLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNCSITHHDATA 58 Query: 54 HAEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE++ + +AG T YVTLEPC P CA ++ ++R+V D Sbjct: 59 HAEIEVIRKAGNVLNNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLK 112 Query: 109 VRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 +G + S + ++E E + L A+ R Sbjct: 113 AGAAGTVMDLFSSQAAYHYATVEKGLLEEECRTQLQAFFQR 153 >gi|257058456|ref|YP_003136344.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8802] gi|256588622|gb|ACU99508.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8802] Length = 230 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 82/228 (35%), Gaps = 18/228 (7%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---- 200 KR +A++ D I K + + D +L G T+ Sbjct: 1 MTIKRPETVAILAITADGKIADNQRHPARFGSDTDKAHLEKQISLVDGVLFGGATLAAYQ 60 Query: 201 ---LADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 L +P+L R + P+ I++ K++ + + + ++ T V Sbjct: 61 TTLLIKNPQLLANRQQQKKPLQPINIVVSGSGKINPNLRFFSQE-VPRWLLTTMQGSIVA 119 Query: 257 ALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 + ++ I D +DLKK+ +L G+ + + GG + S + L+D + Sbjct: 120 KNSHQQAFEKTIVADSKDLKKIDFIQAFLVLKELGLNKVAILGGGELLASLLEVNLIDEL 179 Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355 L +++G P+P+E K + + ++ L Y Sbjct: 180 WLTICPLILGGTTSPTPVEGLGFSYDQAKRLQLLTVESIDQEIFLHYR 227 >gi|328472552|gb|EGF43415.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus 10329] Length = 199 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58 + D FM AL + V ++VKDG VI G + HAE+Q Sbjct: 31 FTPQDEIFMRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQ 88 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L AG T YVTLEPC P CA ++ ++RVV D +G Sbjct: 89 TLRNAGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 142 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E + L A+ R Sbjct: 143 TVLNLFESQAAYHYATVERGLLEDECREQLQAFFKR 178 >gi|37679027|ref|NP_933636.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016] gi|37197769|dbj|BAC93607.1| cytosine/adenosine deaminase [Vibrio vulnificus YJ016] Length = 181 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 47/175 (26%), Positives = 73/175 (41%), Gaps = 22/175 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P S D FM A+ + + + V ++VKDG VI G G HAE+ Sbjct: 7 PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AG+ T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 G L S I ++ESE + L A+ R+ ++ + ++ D+ Sbjct: 119 GTVLDLFSSQAAYHYATIDKGLLESECREQLQAFFKRRRKEIKALKKELQTQSDH 173 >gi|291562950|emb|CBL41766.1| Cytosine/adenosine deaminases [butyrate-producing bacterium SS3/4] Length = 186 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 62/156 (39%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M + + +M A+R ++ L + C+IV DG +I RG HAE Sbjct: 7 MRKMTIEEHYMKEAIRQAKKAAAL--KEVPIGCVIVYDGRIIARGYNRRTVDKNVLAHAE 64 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ A G T YVTLEPC P CA I++ I +VV+ +P Sbjct: 65 IIAMRRACRILGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 118 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G L L + G ++ E L + Sbjct: 119 AGSVLDMLHEDGFNHQVETEVGLLGDECSQMLKDFF 154 >gi|254225102|ref|ZP_04918716.1| zinc-binding domain protein [Vibrio cholerae V51] gi|125622489|gb|EAZ50809.1| zinc-binding domain protein [Vibrio cholerae V51] Length = 193 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 68/176 (38%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERNDAERKN 191 >gi|126658204|ref|ZP_01729355.1| bifunctional deaminase-reductase-like protein [Cyanothece sp. CCY0110] gi|126620575|gb|EAZ91293.1| bifunctional deaminase-reductase-like protein [Cyanothece sp. CCY0110] Length = 226 Score = 106 bits (265), Expect = 6e-21, Method: Composition-based stats. Identities = 38/221 (17%), Positives = 85/221 (38%), Gaps = 12/221 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA--- 202 +E R T+ +A++ D I + + I +N + + D +L G GT+ A Sbjct: 1 MENRPKTTVILAMTADGKIADFQRNAARFSSDIDQNHLEKQISLVDGVLFGAGTLRAFGT 60 Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 D L R + P+ +++ K++ + + ++ +I + + Sbjct: 61 TKMVKDSELLANRKQKNKPSQPINVVISASGKIANNLRFFSQSVPHWLITTSAGIHNNTS 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + I +L + L G+ + + GG + +F+ L+D + L Sbjct: 121 KFEKVLTCAEIEAGKINLVEAFKTLKELGLNHIAILGGGELVANFLEQNLIDELWLTVCP 180 Query: 318 IVIGEGGIPSPLEE-GYLEKN---FMCVRRDYFGSDVCLEY 354 ++G P+P+E G+L + + + ++ L Y Sbjct: 181 YILGGKTAPTPVEGIGFLSSHGQKLELLSLEQIEHEIFLHY 221 >gi|240145078|ref|ZP_04743679.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82] gi|257202749|gb|EEV01034.1| tRNA-specific adenosine deaminase [Roseburia intestinalis L1-82] gi|291537828|emb|CBL10939.1| Cytosine/adenosine deaminases [Roseburia intestinalis XB6B4] Length = 154 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60 + D ++M AA+R ++ L + C+IV++ +I RG HAE+ A+ Sbjct: 2 NQDEKYMKAAIRQAKKAYALDEV--PIGCVIVQNDKIIARGYNRRNTEGNTLAHAELTAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC CA I++ +++VV+ +P +G Sbjct: 60 RKASKKTGDWRLEDCTMYVTLEPCQM------CAGAIVQSRMKKVVIGSMNPKAGCAGSV 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + I ++ E L + Sbjct: 114 LNLLQMQQFNHQVEIEKGVLGEECSAMLSTFF 145 >gi|283796876|ref|ZP_06346029.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1] gi|291075284|gb|EFE12648.1| tRNA-specific adenosine deaminase [Clostridium sp. M62/1] Length = 215 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D R+M A+R ++ L + C+IV G +IGRG T HAE Sbjct: 37 MRKLTEDERYMREAVRQAKKAWAL--GEVPIGCVIVHRGKIIGRGYNRRTTDGNVLAHAE 94 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +A T YVTLEPC P CA I++ I +VV+ +P Sbjct: 95 ILAIRKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 148 Query: 112 SGRGLQWLSQKGI 124 +G L L ++G Sbjct: 149 AGSVLDLLHEEGF 161 >gi|260771319|ref|ZP_05880245.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972] gi|260613635|gb|EEX38828.1| tRNA-specific adenosine-34 deaminase [Vibrio furnissii CIP 102972] Length = 189 Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 63/157 (40%), Gaps = 22/157 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P S D +FM A+ + V ++VKDG +I G G HAE+ Sbjct: 7 PFSPEDEQFMRRAMALAEQAE--AEGEVPVGAVLVKDGHIIAEGWNRSIGACDATAHAEI 64 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AGE T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QVLRQAGEALHNYRLLETTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAA 118 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 G L S + ++E E + L A+ R Sbjct: 119 GTVLDLFSSQAAYHYATVEKGLLEDECRQQLQAFFQR 155 >gi|331696725|ref|YP_004332964.1| bifunctional deaminase-reductase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951414|gb|AEA25111.1| bifunctional deaminase-reductase domain protein [Pseudonocardia dioxanivorans CB1190] Length = 256 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 39/187 (20%), Positives = 69/187 (36%), Gaps = 1/187 (0%) Query: 138 LHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGI 197 L Y + + S D + + S + K +LR +D +LVG Sbjct: 20 LRHYAYPDGLSAPRVRVNFVASLDGAVSV-DGLSGGLGSAADKAVFGVLRRLADVVLVGA 78 Query: 198 GTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 GTV A+ R + P ++ L +++ +AP+++ T Sbjct: 79 GTVRAEGYRGARRPTVGRALPPPIAVVTGSAGLDPGARLFTDTAVAPIVLTTAGAPGERR 138 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 A R +++ LL L RG+ +L EGG A+ + + VD + L S Sbjct: 139 DALRAAGADVVELPDLAPPTLLAELGRRGLHRVLCEGGPALHGALAAADAVDELCLTLSP 198 Query: 318 IVIGEGG 324 ++G Sbjct: 199 TLVGGDA 205 >gi|15640880|ref|NP_230511.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121585742|ref|ZP_01675537.1| zinc-binding domain protein [Vibrio cholerae 2740-80] gi|121728321|ref|ZP_01681351.1| zinc-binding domain protein [Vibrio cholerae V52] gi|147675155|ref|YP_001216345.1| zinc-binding domain-containing protein [Vibrio cholerae O395] gi|153802057|ref|ZP_01956643.1| zinc-binding domain protein [Vibrio cholerae MZO-3] gi|153819008|ref|ZP_01971675.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457] gi|153823068|ref|ZP_01975735.1| zinc-binding domain protein [Vibrio cholerae B33] gi|227081040|ref|YP_002809591.1| yfhC protein [Vibrio cholerae M66-2] gi|229505525|ref|ZP_04395035.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286] gi|229510804|ref|ZP_04400283.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33] gi|229517925|ref|ZP_04407369.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9] gi|229608545|ref|YP_002879193.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236] gi|254848002|ref|ZP_05237352.1| zinc-binding domain-containing protein [Vibrio cholerae MO10] gi|298499008|ref|ZP_07008815.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757] gi|9655317|gb|AAF94026.1| yfhC protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121550105|gb|EAX60121.1| zinc-binding domain protein [Vibrio cholerae 2740-80] gi|121629376|gb|EAX61806.1| zinc-binding domain protein [Vibrio cholerae V52] gi|124122416|gb|EAY41159.1| zinc-binding domain protein [Vibrio cholerae MZO-3] gi|126510441|gb|EAZ73035.1| zinc-binding domain protein [Vibrio cholerae NCTC 8457] gi|126519394|gb|EAZ76617.1| zinc-binding domain protein [Vibrio cholerae B33] gi|146317038|gb|ABQ21577.1| zinc-binding domain protein [Vibrio cholerae O395] gi|227008928|gb|ACP05140.1| yfhC protein [Vibrio cholerae M66-2] gi|227012684|gb|ACP08894.1| yfhC protein [Vibrio cholerae O395] gi|229344640|gb|EEO09614.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC9] gi|229350769|gb|EEO15710.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae B33] gi|229357748|gb|EEO22665.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae BX 330286] gi|229371200|gb|ACQ61623.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae MJ-1236] gi|254843707|gb|EET22121.1| zinc-binding domain-containing protein [Vibrio cholerae MO10] gi|297543341|gb|EFH79391.1| zinc-binding domain-containing protein [Vibrio cholerae MAK 757] Length = 193 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 191 >gi|269926111|ref|YP_003322734.1| bifunctional deaminase-reductase domain protein [Thermobaculum terrenum ATCC BAA-798] gi|269789771|gb|ACZ41912.1| bifunctional deaminase-reductase domain protein [Thermobaculum terrenum ATCC BAA-798] Length = 241 Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 88/235 (37%), Gaps = 14/235 (5%) Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 E ++ ++ + + + D + PI + LR+ Sbjct: 7 CLRECRLTDVYTDLWLPIDEPYVYMNMVTTVDGR-ATIDGKAYPIGDDADHYLMRRLRSF 65 Query: 190 SDAILVGIGTVLADDPELTC-------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALL 242 +DA++VG GT + + R+ + +P +I+ ++ L K + Sbjct: 66 ADAVIVGAGTARNERVSVDIPEDMQHERVAAGKSANPRLVIVSGQGEVKL-YKSLMELGK 124 Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHS 301 +II N L ++++ +++++ L G+T LL+EGG + + Sbjct: 125 ENLIIFGSNKS--LLDLSDYASVHVSSHPYPKPEEVISTLRNQYGLTRLLLEGGPKLNAA 182 Query: 302 FINSRLVDSIILYRSQIVIGEGGIP--SPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 FI S V+ + + VIG+ G+P P ++ V S++ Y Sbjct: 183 FIESGSVNELFWTIAPKVIGKEGLPMVMPTSNLPVKTQLQLVSLYVSDSEIFTRY 237 >gi|295089886|emb|CBK75993.1| Cytosine/adenosine deaminases [Clostridium cf. saccharolyticum K10] Length = 214 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 17/133 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D R+M A+R ++ L + C+IV G +IGRG T HAE Sbjct: 36 MRKLTEDERYMREAVRQAKKAWAL--GEVPIGCVIVHRGKIIGRGYNRRTTDGNVLAHAE 93 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +A T YVTLEPC P CA I++ I +VV+ +P Sbjct: 94 ILAIRKACRIIGDWRLEECTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGC 147 Query: 112 SGRGLQWLSQKGI 124 +G L L ++G Sbjct: 148 AGSVLDLLHEEGF 160 >gi|229826609|ref|ZP_04452678.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC 49176] gi|229789479|gb|EEP25593.1| hypothetical protein GCWU000182_01985 [Abiotrophia defectiva ATCC 49176] Length = 167 Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 22/169 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60 + D ++M A++ + L + C+IV DG +I RG HAE+ A+ Sbjct: 2 TTDEKWMKEAIKQAEKAKKLDEV--PIGCVIVLDGKIIARGYNRRNTDHTSLAHAEMMAI 59 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ R T YVTLEPC CA I++ + RVV+ + +G Sbjct: 60 KKACKKIRDWRLEKCTLYVTLEPCQM------CAGAIVQSRVERVVIGAMNKKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 L K +V ++E+E + + K+SH A S Sbjct: 114 FNLLEEDRFNHKAEVVRGVLENECSEMMSMFFKELRAKKSHAFCFDAAS 162 >gi|262190740|ref|ZP_06048969.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93] gi|262033384|gb|EEY51893.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae CT 5369-93] Length = 175 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 69/178 (38%), Gaps = 22/178 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 6 FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGM 166 + S + ++E E + L A+ R+ ++ + + Sbjct: 118 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKNKL 175 >gi|326332013|ref|ZP_08198298.1| riboflavin biosynthesis protein RibD C- domain protein [Nocardioidaceae bacterium Broad-1] gi|325950151|gb|EGD42206.1| riboflavin biosynthesis protein RibD C- domain protein [Nocardioidaceae bacterium Broad-1] Length = 222 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 71/182 (39%), Gaps = 9/182 (4%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 + + + + S D + S + + + H+LR +D +LVG GT +A Sbjct: 20 YTPPRLPWLRVNMVSSLDGAATGSDGRSGTVNNAVDVDVFHVLRELADVVLVGAGTAVA- 78 Query: 204 DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKK 263 + +P+ +++ ++ D + + + + ++ Sbjct: 79 -------ETYTAKGTPI-VVVSRRGRVPEDLRGCEPGAVRLATVAEAPGLDAARDEIGEE 130 Query: 264 NINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 N+ ++ DL LLT L G+ +L EGG ++ S + + LVD + + ++ Sbjct: 131 NVYVVGTSEVDLPALLTRLHEEGLRHVLCEGGPSLLGSLLEAGLVDELCHTITPKLLAGD 190 Query: 324 GI 325 G Sbjct: 191 GR 192 >gi|153837700|ref|ZP_01990367.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810] gi|260366298|ref|ZP_05778754.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030] gi|260876398|ref|ZP_05888753.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034] gi|308095607|ref|ZP_05907165.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus Peru-466] gi|308126068|ref|ZP_05907632.2| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037] gi|149748895|gb|EDM59726.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ3810] gi|308086905|gb|EFO36600.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus Peru-466] gi|308092990|gb|EFO42685.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AN-5034] gi|308106632|gb|EFO44172.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus AQ4037] gi|308112714|gb|EFO50254.1| tRNA-specific adenosine deaminase [Vibrio parahaemolyticus K5030] Length = 174 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58 + D FM AL + V ++VKDG VI G + HAE+Q Sbjct: 6 FTPQDEIFMRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQ 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L AG T YVTLEPC P CA ++ ++RVV D +G Sbjct: 64 TLRNAGAVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E + L A+ R Sbjct: 118 TVLNLFESQAAYHYATVEKGLLEDECREQLQAFFKR 153 >gi|154505232|ref|ZP_02041970.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149] gi|153794430|gb|EDN76850.1| hypothetical protein RUMGNA_02745 [Ruminococcus gnavus ATCC 29149] Length = 179 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 67/155 (43%), Gaps = 22/155 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57 + + D ++M A+R ++ L + C+IV +IGRG HAE+ Sbjct: 18 NIMNQDEKYMREAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTVDKNTLAHAEL 75 Query: 58 QALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 QA+ +A ++ T YVTLEPC C+ I++ I+RVVV +P + Sbjct: 76 QAIRKASKKMDDWRLEDCTMYVTLEPC------QMCSGAIVQARIKRVVVGCMNPKAGCA 129 Query: 113 GRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 G L L + + + ++E + + + Sbjct: 130 GSILNLLDMKEFNHQVELTTGVLEEQCSGMMKQFF 164 >gi|260589044|ref|ZP_05854957.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583] gi|331083249|ref|ZP_08332362.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540823|gb|EEX21392.1| tRNA-specific adenosine deaminase [Blautia hansenii DSM 20583] gi|330404330|gb|EGG83875.1| hypothetical protein HMPREF0992_01286 [Lachnospiraceae bacterium 6_1_63FAA] Length = 164 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 64/152 (42%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D RFM A + + L + C+IV +G +I RG T HAE+ A+ Sbjct: 2 TEDERFMREAKKQAMKAYALREV--PIGCVIVYEGKIIARGYNRRNTDKNTVSHAEINAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ G T YVTLEPC CA II+ + RVV+ +P +G Sbjct: 60 RKASKKLGDWRLEGCTLYVTLEPCQM------CAGAIIQARVDRVVIGSMNPKAGCAGSV 113 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L L G + ++E E L + Sbjct: 114 LNLLEMDGFNHKAEVTRGVLEEECSSMLSGFF 145 >gi|169630059|ref|YP_001703708.1| hypothetical protein MAB_2976 [Mycobacterium abscessus ATCC 19977] gi|169242026|emb|CAM63054.1| Conserved hypothetical protein (possible reductase) [Mycobacterium abscessus] Length = 260 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 72/166 (43%), Gaps = 9/166 (5%) Query: 185 LLRAQSDAILVGIGTVLADD---PELTC-----RLNGLQEHSPMRIILDPHFKLSLDSKI 236 +RA +D ILVG GTV A+ L R + Q+ P ++ + + + Sbjct: 78 AMRANADVILVGSGTVRAERYHGAHLPVGLRQRRQSRGQDEVPTIAVVTASGAVDPSTPL 137 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIY-CDCRDLKKLLTILVGRGVTSLLVEGG 295 + +AP+++ + + P +A I + D DL L L RG++ +L EGG Sbjct: 138 FNESEVAPIVVTSASGAPHVASRVPGAQILVSGDGDTVDLPAALATLHARGLSRVLCEGG 197 Query: 296 AAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCV 341 A+ + +++ LVD + L + IG G+ + + V Sbjct: 198 PALLGTLLSAHLVDELCLTIAPTTIGGAGLRITSGPAEVLTGWRRV 243 >gi|311028951|ref|ZP_07707041.1| CMP/dCMP deaminase zinc-binding protein [Bacillus sp. m3-13] Length = 161 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 22/168 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61 D FM A+ ++ L + ++V DG VI +G HAE+ ++ Sbjct: 2 QDEHFMKLAIEEAKKAEAL--KEVPIGAVLVHDGKVISKGYNLRETTQRSITHAEIMVID 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A E AT YVTLEPC P CA II+ I +VV DP +G + Sbjct: 60 QACEALQTWRLEEATLYVTLEPC------PMCAGAIIQSRIMKVVYGAKDPKAGCAGTLM 113 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 L +V +ME E L ++ + +++ L+ + S Sbjct: 114 NILQDSRFNHQTEVVSGIMEEECGELLSSFFRKLRQQKKEKKLRESNS 161 >gi|75907026|ref|YP_321322.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis ATCC 29413] gi|75700751|gb|ABA20427.1| bifunctional deaminase-reductase-like protein [Anabaena variabilis ATCC 29413] Length = 227 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 15/224 (6%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 V+ R H T+ +A+S D I + K + A SDA+L+G GT+ A Sbjct: 1 MVQHRPHTTVVLAMSADGKIADFRRSPARFGTSVDKTHLEEQIAASDAVLIGAGTLRAYG 60 Query: 205 PELTC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 LT R + P+ I++ L+ + + + + ++ T Sbjct: 61 TTLTVSDTVLLQQRQQQGKPDQPIHIVITHSANLNPEIRFFQQPIR-RWLVTTNLGKNFW 119 Query: 257 ALAFRKKNINIIYCDCRDLKK--LLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + I + ++ +L L + LLV GG A+ S + L+D L Sbjct: 120 QGRSEFERILVFETPTGEIDTITVLKQLTSLQIARLLVLGGGALVASMLELDLIDEFWLT 179 Query: 315 RSQIVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEY 354 +++G P+P++ L + + +V L Y Sbjct: 180 VCPLILGGVTAPTPVDGKGFTSQLAPHLQLLEVKKVEHEVFLHY 223 >gi|258620044|ref|ZP_05715084.1| zinc-binding domain protein [Vibrio mimicus VM573] gi|258587777|gb|EEW12486.1| zinc-binding domain protein [Vibrio mimicus VM573] Length = 178 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 14 FSAQDEQFMRRAIMLAAQAE--EQGEVPVGAVLVRDGEIIAEGWNCSITHHDATAHAEIE 71 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 72 VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 125 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 + + + ++E E + L A+ R Sbjct: 126 TVMDLFNSQASYHYATVEKGLLEEECRAQLQAFFQR 161 >gi|27363814|ref|NP_759342.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6] gi|27359931|gb|AAO08869.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus CMCP6] Length = 181 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 46/175 (26%), Positives = 71/175 (40%), Gaps = 22/175 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P S D FM A+ + + + V ++VKDG VI G G HAE+ Sbjct: 7 PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AG+ T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 G L S I ++E E + L A+ R+ ++ + + D+ Sbjct: 119 GTVLDLFSSQAAYHYATIEKGLLELECREQLQAFFKRRRKEIKALKKEQQTQSDH 173 >gi|301093219|ref|XP_002997458.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262110714|gb|EEY68766.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 149 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNP-SVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEE 62 D FM A+ + S N V C++V+DG+V+ G + G HAE AL + Sbjct: 6 ESDVAFMRLAVAEAHRSQP--SENAYCVGCVVVRDGLVLSTGFSRELPGNTHAEQVALHK 63 Query: 63 AGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 EA+GAT Y T+EPCS + PC Q + G+ RVV+ V +P V +G+Q L + Sbjct: 64 LNFEAQGATVYTTMEPCSTRVSGNVPCVQSCLRAGVARVVIGVMEPKTFVICKGVQLLQE 123 Query: 122 KGIIVDRMMESE 133 + V + E Sbjct: 124 ARVDVKLLKGLE 135 >gi|210613778|ref|ZP_03289892.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787] gi|210150987|gb|EEA81995.1| hypothetical protein CLONEX_02100 [Clostridium nexile DSM 1787] Length = 158 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58 + + D ++M A++ ++ L + C+IV + +IGRG HAE+ Sbjct: 1 MMNKDEKYMKEAIKQAKKAYAL--GEVPIGCVIVYEDKIIGRGYNRRTIDKNTIAHAEMM 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+++A ++ T YVTLEPC C+ I++ +++VVV +P +G Sbjct: 59 AIKKASKKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E + + Sbjct: 113 SILNLLQMEEFNHQVELEIGVLEEECSALMKNFF 146 >gi|238917935|ref|YP_002931452.1| hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750] gi|238873295|gb|ACR73005.1| Hypothetical protein EUBELI_02023 [Eubacterium eligens ATCC 27750] Length = 176 Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats. Identities = 42/154 (27%), Positives = 61/154 (39%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58 D R+M A+ ++ L + C+IV +G VIGRG HAE+ Sbjct: 13 FEKDDYRYMKQAITQAKKAYKLNEV--PIGCVIVYEGKVIGRGYNRRNTDKTSLGHAEIT 70 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+++A T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 71 AIKKASRYMNDWRLENCTLYVTLEPCQM------CAGAIVQARIPRVVIGSMNPKAGCAG 124 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + I + E E L + Sbjct: 125 SILNILQIPTFNHQCEITKGVCEEECSEMLTTFF 158 >gi|213585178|ref|ZP_03367004.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 69 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 22/57 (38%), Positives = 32/57 (56%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE 62 D +M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL Sbjct: 2 QDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRM 58 >gi|255744661|ref|ZP_05418612.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101] gi|262161205|ref|ZP_06030316.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1] gi|262168710|ref|ZP_06036405.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27] gi|255737692|gb|EET93086.1| tRNA-specific adenosine-34 deaminase [Vibrio cholera CIRS 101] gi|262022828|gb|EEY41534.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae RC27] gi|262028955|gb|EEY47608.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae INDRE 91/1] Length = 175 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 38/176 (21%), Positives = 69/176 (39%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 6 FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + + Sbjct: 118 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 173 >gi|323499761|ref|ZP_08104720.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326] gi|323315002|gb|EGA68054.1| tRNA-specific adenosine-34 deaminase [Vibrio sinaloensis DSM 21326] Length = 179 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 69/171 (40%), Gaps = 22/171 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D FM A+ ++ V ++VKDG +I G G HAE+Q Sbjct: 6 FTPQDELFMRRAMDLAKQAE--AEGEVPVGAVLVKDGEIIAEGWNQSIGQNDATAHAEIQ 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 TLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 L + + ++E+E + L A+ R+ +++ + + Sbjct: 118 TVLNLFEHQAAYHYADVERGLLETECRTQLQAFFKRRRKEKKNERKATRFT 168 >gi|262172118|ref|ZP_06039796.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451] gi|261893194|gb|EEY39180.1| tRNA-specific adenosine-34 deaminase [Vibrio mimicus MB-451] Length = 170 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 6 FSAQDEQFMRRAIMLAAQAE--EQGEVPVGAVLVRDGEIIAEGWNCSITHHDATAHAEIE 63 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 + + + ++E E + L A+ R Sbjct: 118 TVMDLFNSQASYHYATVEKGLLEEECRAQLQAFFQR 153 >gi|148981936|ref|ZP_01816576.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3] gi|145960698|gb|EDK26041.1| cytosine/adenosine deaminase [Vibrionales bacterium SWAT-3] Length = 181 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 22/167 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D FM A+ ++ + V ++VKDG VI G G HAEV+ Sbjct: 6 FTPQDEIFMRRAIEVAKKAE--SEGEVPVGAVLVKDGEVISEGWNRSIGSHDATAHAEVE 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 TLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 L + ++E E + L A+ R+ ++ + Sbjct: 118 TVLNLFESQASYHYADVEHGLLEDECREQLQAFFKRRRKEIKEKRKQ 164 >gi|255279741|ref|ZP_05344296.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM 14469] gi|255269514|gb|EET62719.1| tRNA-specific adenosine deaminase [Bryantella formatexigens DSM 14469] Length = 166 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 64/153 (41%), Gaps = 22/153 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQA 59 S +FM A+R ++ L + C+IV+DG +I RG HAE+ A Sbjct: 6 SKIHEKFMREAIRQAKKAYALDE--VPIGCVIVQDGKIIARGYNRRNTDKNTLSHAELIA 63 Query: 60 LEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 +++A ++ G T Y+TLEPC CA +++ + V+ +P +G Sbjct: 64 IKKAAKKTGDWRLEGCTMYITLEPC------QMCAGAMVQARLTEAVIGSMNPKAGCAGS 117 Query: 115 GLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E L + Sbjct: 118 ILNILEMPEFNHQVQVTRGVLEEECSELLSRFF 150 >gi|153824574|ref|ZP_01977241.1| zinc-binding domain protein [Vibrio cholerae MZO-2] gi|149741792|gb|EDM55821.1| zinc-binding domain protein [Vibrio cholerae MZO-2] Length = 193 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM A+ + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRRAIVLAAQAEAQ--GEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 L S + ++E E + L A+ R+ ++ + Sbjct: 136 TVLDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 191 >gi|213616341|ref|ZP_03372167.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 127 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 56/126 (44%), Positives = 75/126 (59%), Gaps = 1/126 (0%) Query: 41 VIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100 ++G G G PHAEV AL AG +A+GATAYVTLEPCSH+GR+PPC +I G+ RV Sbjct: 2 IVGEGYHHRAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARV 61 Query: 101 VVCVDDPDVRVSGRGLQWLSQKGI-IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 V + DP+ +V+GRGL L Q GI + +M SE + +L R ++ LK+ S Sbjct: 62 VAAMQDPNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGAS 121 Query: 160 QDNMIG 165 D Sbjct: 122 VDGRTA 127 >gi|86145643|ref|ZP_01063973.1| Cytosine/adenosine deaminase [Vibrio sp. MED222] gi|85836614|gb|EAQ54740.1| Cytosine/adenosine deaminase [Vibrio sp. MED222] Length = 212 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 68/176 (38%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 S D FM A+ ++ V ++VKDG VI G G HAE++ Sbjct: 24 FSPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKDGEVISEGWNRSIGCHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 L + ++E E + L A+ R+ ++ + ++ + Sbjct: 136 TVLNLFESQASYHYADVEHGLLEEECREQLQAFFKRRRKEIKEKRKLERLQEEQRL 191 >gi|218245420|ref|YP_002370791.1| bifunctional deaminase-reductase domain-containing protein [Cyanothece sp. PCC 8801] gi|218165898|gb|ACK64635.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 8801] Length = 230 Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 81/228 (35%), Gaps = 18/228 (7%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV---- 200 KR +A++ D I K + + D +L G T+ Sbjct: 1 MTIKRPQTVAILAITVDGKIADNQRHPARFGSDTDKAHLEKQISLVDGVLFGAATLAAYQ 60 Query: 201 ---LADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL 256 L +PEL R + P+ I++ K++ + + + ++ T V Sbjct: 61 TTLLIKNPELLADRQQQKKPLQPINIVVSGSGKINPNLRFFSQE-VPRWLLTTMPGSIVA 119 Query: 257 ALAFRKKNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSI 311 + + I D +DLKK+ +L G+ + + GG + S + L+D + Sbjct: 120 KKSNHQAFEKTIIADSKDLKKIDFIKAFLVLKELGLNKVAILGGGELLASLLEVNLIDEL 179 Query: 312 ILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRDYFGSDVCLEYI 355 L +++G P+P+E K + + ++ L Y Sbjct: 180 WLTICPLILGGTTSPTPVEGLGFSYDQAKRLQLLTVESIDQEIFLHYR 227 >gi|226309631|ref|YP_002769525.1| tRNA specific adenosine deaminase [Brevibacillus brevis NBRC 100599] gi|226092579|dbj|BAH41021.1| putative tRNA specific adenosine deaminase [Brevibacillus brevis NBRC 100599] Length = 160 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + +M A+ +R + + +IV+DG ++GRG T HAE Sbjct: 1 MIQENEHDYYMKQAMEEARKAAAI--GEVPIGAVIVRDGEIVGRGYNLRETQKDPTLHAE 58 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ EA G G T YVTLEPC P CA I++ I +VV DP Sbjct: 59 LIAIREASERLGGWRLIGCTLYVTLEPC------PMCAGAIVQSRIEKVVYGARDPKAGC 112 Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 +G + L+ + +++ ++ E L + Sbjct: 113 AGTLMNLLAEPRFNHQVPVIEGVLAEECGQMLKEFF 148 >gi|291549089|emb|CBL25351.1| Cytosine/adenosine deaminases [Ruminococcus torques L2-14] Length = 163 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 26/172 (15%) Query: 5 SFDARFMSAALRFSRWH--VGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + D ++M AAL+ + +G T + C+IV + +I RG T HAEV Sbjct: 2 TTDEKYMRAALKQAEKAYNLGET----PIGCVIVHEDKIIARGYNRRNTDKNPLAHAEVA 57 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+++A ++ T YVTLEPC CA I++ I RVVV +P +G Sbjct: 58 AIKKASKKLGDWRLEECTLYVTLEPCQM------CAGAIVQSRIPRVVVGCMNPKAGCTG 111 Query: 114 RGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQ 160 L L + + + ++E E + + E R A S Sbjct: 112 SILNLLDIQAFNHQADLTTGVLEEECSQLMKQFFRELREARKMKKKAEAQSL 163 >gi|254411620|ref|ZP_05025396.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Microcoleus chthonoplastes PCC 7420] gi|196181342|gb|EDX76330.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Microcoleus chthonoplastes PCC 7420] Length = 233 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 77/222 (34%), Gaps = 14/222 (6%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202 + H T+ +A+S D I + + + A +D +L G GT+ A Sbjct: 8 NQPHTTVVLAMSADGKIADVTRSPARFSSSADQAHLESQVALADGVLFGAGTLRAYGTTR 67 Query: 203 --DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP--VLA 257 + +L R P++I+ + + + ++ +P + Sbjct: 68 SVSNSQLQQQRKQRGLPIQPVQIVCSRLAQFDPQLRFFHQNVPRWLLTTEAGAEPWRDKS 127 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 F + + D + L G+ L V GG + S + + L+D + Sbjct: 128 DYFERILVVNASSDGINWHDAYQQLNQLGIQRLAVLGGGNLVASLLAADLIDELWFTVCP 187 Query: 318 IVIGEGGIPSPLEEGY----LEKNFMCVRRDYFGSDVCLEYI 355 +++G P+P+E L K + + ++ L Y Sbjct: 188 LILGGAAAPTPVEGTGFSEQLAKRLELLAVERVDQELFLHYR 229 >gi|187735588|ref|YP_001877700.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC BAA-835] gi|187425640|gb|ACD04919.1| CMP/dCMP deaminase zinc-binding [Akkermansia muciniphila ATCC BAA-835] Length = 181 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 48/157 (30%), Positives = 63/157 (40%), Gaps = 23/157 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D FM A++ SR L V ++VKDG VIGRG T HAE Sbjct: 7 MEMPGSDEWFMRQAMKESRKA--LVKGEVPVGAIVVKDGRVIGRGWNQVETLKDATAHAE 64 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL A E G T YVT EPC P CA I+ C RVV D Sbjct: 65 MIALTAAQEALGDWRLEGCTLYVTKEPC------PMCAGAIVHCRPDRVVFGCPDAKTGA 118 Query: 112 SGRGLQW------LSQKGIIVDRMMESEGKIFLHAYL 142 +G + L+ K + ++ E + L + Sbjct: 119 AGGWINLLDSNPPLNHKCEVRPGVLGDECLLHLQEFF 155 >gi|330830279|ref|YP_004393231.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565] gi|328805415|gb|AEB50614.1| CMP/dCMP deaminase zinc-binding protein [Aeromonas veronii B565] Length = 201 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 22/175 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 + D ++M A+ + G+ V ++V DG V+G G + C HAEV Sbjct: 33 SQTEQDEQWMRHAMALAARAEGI--GEIPVGAVLVLDGQVVGEGWNRSISEHDACAHAEV 90 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ AG++ T YVTLEPC CA +I ++RVV D + Sbjct: 91 MAIRAAGKQLANYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAA 144 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 G + L ++ ++ L A+ R+ ++ L + S D Sbjct: 145 GSVFEILQDPRHNHSVELIGGVLADACSAQLSAFFKRRRAEKKAAKLALQQSNDT 199 >gi|325264602|ref|ZP_08131332.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp. D5] gi|324030264|gb|EGB91549.1| cytidine/deoxycytidylate deaminase family protein [Clostridium sp. D5] Length = 159 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M A+R ++ L + C+IV +IGRG HAE+ A+ Sbjct: 2 NADEKYMKEAIRQAKKAYAL--EEVPIGCVIVYQDKIIGRGYNRRTIDKNPLAHAELTAI 59 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A ++ T YVTLEPC C+ II+ ++RVVV +P +G Sbjct: 60 RRASKKLNDWRLEECTLYVTLEPCQM------CSGAIIQARVQRVVVGCMNPKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E + + Sbjct: 114 LNLLEMKEFNHQAELTTGVLEKECSTMMKQFF 145 >gi|261252226|ref|ZP_05944799.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891] gi|260935617|gb|EEX91606.1| tRNA-specific adenosine-34 deaminase [Vibrio orientalis CIP 102891] Length = 178 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D RFM A+ + T V ++VKDG +I G G HAE+Q Sbjct: 6 FTPQDERFMRRAMELAAHAE--TQGEVPVGAVLVKDGEIIAEGWNESIGQHDATAHAEMQ 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AGE T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 TIRKAGEVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L + + ++E E ++ L A+ Sbjct: 118 TVLNLFEHQAAYHYADVEKGLLEDECRVQLQAFF 151 >gi|54025702|ref|YP_119944.1| hypothetical protein nfa37320 [Nocardia farcinica IFM 10152] gi|54017210|dbj|BAD58580.1| putative deaminase/reductase [Nocardia farcinica IFM 10152] Length = 259 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 73/235 (31%), Gaps = 21/235 (8%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y + + S D +G + + K LLR +D +LVG GTV Sbjct: 28 YAYPMGLADPWVRVNFVASIDG-AATSGDVTAALGTPADKRVFKLLRDLADVVLVGAGTV 86 Query: 201 LADD-------------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVII 247 ++ R P ++ L +++ + P+II Sbjct: 87 RTENYGGARTDAARRRSLHDRSRGGHPDGAPPPIAVVTATAALEPTCRLLTDTTVPPLII 146 Query: 248 VTENDDPVLALAFRKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 +I K LL L RG+ +L EGG + I + Sbjct: 147 TAAAAPADRKEKLAAAGAEVIEAGEAAVTPKALLAALAERGLHRVLCEGGPHLFGQLIEA 206 Query: 306 RLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD---VCLEYIGK 357 LVD + L + +++G L ++ RR D V + + Sbjct: 207 DLVDELCLTTAPVLVGGTAGRISLSAREFHQHMH--RRHMILDDDGTVLTRWARR 259 >gi|320157222|ref|YP_004189601.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O] gi|319932534|gb|ADV87398.1| tRNA-specific adenosine-34 deaminase [Vibrio vulnificus MO6-24/O] Length = 181 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 22/172 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P S D FM A+ + + + V ++VKDG VI G G HAE+ Sbjct: 7 PFSLQDEVFMRRAIELA--AIAESEGEVPVGAVLVKDGEVIAEGWNQSIGQHDATAHAEI 64 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 Q L +AG+ T YVTLEPC P CA ++ ++R+V D + Sbjct: 65 QTLRQAGQSLGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAA 118 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 G L S I ++ESE + L A+ R+ ++ + ++ Sbjct: 119 GTVLDLFSSQAAYHYATIEKGLLESECRDQLQAFFKRRRKEIKALKKELQTQ 170 >gi|218708682|ref|YP_002416303.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32] gi|218321701|emb|CAV17655.1| tRNA-specific adenosine deaminase [Vibrio splendidus LGP32] Length = 212 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 64/165 (38%), Gaps = 22/165 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 S D FM A+ ++ V ++VKDG VI G G HAE++ Sbjct: 24 FSPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKDGEVISEGWNRSIGCHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 L + ++E E + L A+ R+ ++ Sbjct: 136 TVLNLFESQASYHYADVEHGLLEEECREQLQAFFKRRRKEIKEKR 180 >gi|317125029|ref|YP_004099141.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] gi|315589117|gb|ADU48414.1| bifunctional deaminase-reductase domain protein [Intrasporangium calvum DSM 43043] Length = 254 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 78/203 (38%), Gaps = 17/203 (8%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------ 203 + + + D S I LLR S A++VG GT+ A+ Sbjct: 32 PWLRCNMVTTVDGGATGPDGRSGSINTAADHIVFELLRGLSHAVIVGAGTIRAEGYTGLT 91 Query: 204 ---DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA- 259 D R G+ E P+ I + +L + + A P ++ T P LA A Sbjct: 92 VSPDVLPLRRDLGIDEPLPL-IAVSRSGRLPESA---QGAAGGPALLATCARAPGLAEAQ 147 Query: 260 --FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++++ + D DL L+ L RG T LL EGG + SF+ RLVD + + Sbjct: 148 SILGREHVLVCGEDEVDLPLLVARLHERGWTRLLCEGGPHLTGSFLAVRLVDELCFTIAP 207 Query: 318 IVIGEGGIPSPLEEGYLEKNFMC 340 V+G G P P+ Sbjct: 208 RVVG-GMHPRPVGPAASPLELEL 229 >gi|20806575|ref|NP_621746.1| cytosine/adenosine deaminase [Thermoanaerobacter tengcongensis MB4] gi|20515016|gb|AAM23350.1| Cytosine/adenosine deaminases [Thermoanaerobacter tengcongensis MB4] Length = 148 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEA- 63 +FM AL+ ++ L V +IVKDG +I RG HAE+ A+ EA Sbjct: 4 KFMEEALKEAKKSYEL--GEVPVGAVIVKDGEIIARGHNQKESSKDATAHAEIIAIREAC 61 Query: 64 ----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + YVTLEPC P CA I+E I+RV + + P +G + L Sbjct: 62 RRLGSWRLEDCSLYVTLEPC------PMCAGAIVEARIKRVYIGTESPKEGAAGSVINIL 115 Query: 120 SQKGI-----IVDRMMESEGKIFLHAYL 142 + K + + +ME E K L + Sbjct: 116 NNKELGTSTEVYFGIMEEEAKELLKKFF 143 >gi|167629244|ref|YP_001679743.1| cytidine and deoxycytidylate deaminase zinc-binding region protein, putative [Heliobacterium modesticaldum Ice1] gi|167591984|gb|ABZ83732.1| cytidine and deoxycytidylate deaminase zinc-binding region protein, putative [Heliobacterium modesticaldum Ice1] Length = 152 Score = 103 bits (257), Expect = 5e-20, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 69/156 (44%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 ++ D +FM AL R + C+IVKDG VIGRG T HAEV Sbjct: 1 MALADDKFMGLALEEGRQA--YAKGEVPIGCVIVKDGEVIGRGHNLRETEKNPVAHAEVL 58 Query: 59 ALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+++A G GAT YVT+EPC P CA I+ I RVV V DP +G Sbjct: 59 AIQDAANRIGGWRLAGATLYVTVEPC------PMCAGAIVLARIPRVVFAVMDPKGGAAG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++ + E E + + ++ R Sbjct: 113 TCFNILESPWTNHRVSVISGVREGEARELMQSFFQR 148 >gi|291301495|ref|YP_003512773.1| bifunctional deaminase-reductase domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290570715|gb|ADD43680.1| bifunctional deaminase-reductase domain protein [Stackebrandtia nassauensis DSM 44728] Length = 242 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 80/209 (38%), Gaps = 17/209 (8%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 VS + S ++G +LR + D ++VG GTV D Sbjct: 18 WYAPSAPDWLRVNFVSSADGAVEVNGDSKALSGEDDMRVFRILRMRCDVLVVGAGTVRTD 77 Query: 204 ---DPELT------CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN-DD 253 L+ R GL +H P+ ++ L LD+ + + A + P++I E+ D Sbjct: 78 GYRALRLSQDRVEWRRAAGLPDH-PVMAVVSRSGILDLDTPLFREAPVRPIVITPEDLDA 136 Query: 254 PVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 LA ++ D + L RG+ +L EGG V + LVD + L Sbjct: 137 KRLAELSDVADVVAAGTGSVDFAEAFERLRQRGLRQILCEGGPHVFGEITAAGLVDELCL 196 Query: 314 YRSQIVIGEG------GIPSPLEEGYLEK 336 S + G G G PSPL+ +L Sbjct: 197 TLSPHLAGAGSGRITAGPPSPLKRMHLAH 225 >gi|90410888|ref|ZP_01218902.1| Putative cytosine/adenosine deaminase [Photobacterium profundum 3TCK] gi|90328101|gb|EAS44412.1| Putative cytosine/adenosine deaminase [Photobacterium profundum 3TCK] Length = 175 Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats. Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 22/172 (12%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 + D +M A+ + V ++V +G V+G G + HAE+ AL Sbjct: 12 NHDELYMRRAIELA--SQAEAEGEVPVGAVVVYEGRVVGEGWNRSIGQHDATAHAEMMAL 69 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +AG+ AT YVTLEPC P CA ++ I +V+ D +G Sbjct: 70 RQAGKVIQNYRLLDATLYVTLEPC------PMCAGAMVHSRIGKVIFGASDLKTGAAGSV 123 Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + L + +++ E + L A+ R+ ++ + DN Sbjct: 124 MNLLSYDEVNHHVDCQAGVLDEECRAQLQAFFKRRRAEKKAEKKARQAALDN 175 >gi|225575495|ref|ZP_03784105.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM 10507] gi|225037292|gb|EEG47538.1| hypothetical protein RUMHYD_03586 [Blautia hydrogenotrophica DSM 10507] Length = 183 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 ++M A+R ++ L + C+IV DG +I RG T HAE+ A+++A Sbjct: 28 EKYMREAIRQAKKAWALDEV--PIGCVIVFDGKIIARGYNRRNTDRNTLSHAELNAIKKA 85 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ G T YVTLEPC CA I++ I VV+ +P +G L Sbjct: 86 SKKLGDWRLEGCTMYVTLEPC------QMCAGAIVQARIDEVVIGSMNPKAGCAGSVLNL 139 Query: 119 L-----SQKGIIVDRMMESEGKIFLHAYL 142 L + + I +++ E L + Sbjct: 140 LDIPQFNHQVKITRGILQEECSALLSDFF 168 >gi|167758650|ref|ZP_02430777.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704] gi|167663846|gb|EDS07976.1| hypothetical protein CLOSCI_00991 [Clostridium scindens ATCC 35704] Length = 157 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQ 58 + S D ++M A+R +R + + C+IV +IGRG HAE+ Sbjct: 1 MHSIDEKYMKEAIRQARKAYAI--GEVPIGCVIVYKDKIIGRGYNRRMADKNTLSHAELI 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + T YVTLEPC C+ I++ + RVVV +P +G Sbjct: 59 AIRKASRKMGDWRLEECTMYVTLEPC------QMCSGAIVQSRMSRVVVGCMNPKAGCAG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E + + Sbjct: 113 SILNLLQMTEFNHQAELTTGVLEEECSQMMKDFF 146 >gi|297380640|gb|ADI35527.1| riboflavin biosynthesis protein (ribG) [Helicobacter pylori v225d] Length = 276 Score = 103 bits (256), Expect = 7e-20, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 109/278 (39%), Gaps = 47/278 (16%) Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIV 126 + +TLEPC+ YG++P C+ + +RVV+ ++ + + G LQ +G++ Sbjct: 27 KDCVFLITLEPCNSYGKTPACSGLLEILKPKRVVIATEENEAKKGGLARLQKARIEGVVC 86 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + + L + Q + + L + ++ D G ITG S H Sbjct: 87 ESLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHG-------KITGQKSVIFTHNQ 139 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA D ++V T+ D+P L R Q +P IL H + +SK+ Sbjct: 140 RAICDTLIVSGKTIRTDNPLLDARFCDSFYQNKNPNIAILSKH-SIDPNSKVFSAPN--- 195 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 + +N+ Y D +DL + +G +EGG + S + Sbjct: 196 ------------------RLVNVFY-DPKDLP------LEKGFN--FIEGGWELFESLRD 228 Query: 305 SRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338 +D+++L+ +I E + +P + L Sbjct: 229 K--IDALLLHSHASMISEAFSAFALKTPFKGRLLHAQI 264 >gi|313905719|ref|ZP_07839079.1| Cof-like hydrolase [Eubacterium cellulosolvens 6] gi|313469426|gb|EFR64768.1| Cof-like hydrolase [Eubacterium cellulosolvens 6] Length = 450 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQAL 60 + ++M AA+R ++ + + +IV+DG +I RG HAE+ AL Sbjct: 296 AVMEKYMRAAIREAKRAA--SIGEVPIGAVIVRDGEIIARGYNRRNTDHNTLSHAELNAL 353 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ G T YVT+EPC CA +++ I +VV+ P +G Sbjct: 354 RKASKKLGDWRLEGCTMYVTMEPCQM------CAGALVQSRIDKVVIGCMSPKTGCAGSV 407 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 + + + ++E E L + Sbjct: 408 MNLMQVPVFNHSVELEKGILEEECSRILTEFF 439 >gi|266621805|ref|ZP_06114740.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479] gi|288866494|gb|EFC98792.1| tRNA-specific adenosine deaminase [Clostridium hathewayi DSM 13479] Length = 165 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 68/152 (44%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M AA+ +R G P + C+IV + +I RG HAE+ A+ Sbjct: 2 NADEKYMRAAIGQARKA-GAIGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEIIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ G T YVTLEPC P CA I++ I +VV+ +P +G Sbjct: 60 KKACKKIGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVVIGCMNPKAGCAGSV 113 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L L + G + ++E E + + Sbjct: 114 LDLLHEDGFNHQVEMEKGVLEEECSRLMKEFF 145 >gi|153813521|ref|ZP_01966189.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174] gi|149830392|gb|EDM85484.1| hypothetical protein RUMOBE_03942 [Ruminococcus obeum ATCC 29174] Length = 164 Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats. Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 22/172 (12%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEEAGEE 66 M A+R ++ L + C+IV DG +I RG HAE+ A+ +A ++ Sbjct: 1 MKEAIRQAKKARAL--EEVPIGCVIVSDGKIIARGYNRRNTDKNTLSHAELNAIRKASKK 58 Query: 67 -----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 G T YVTLEPC CA +++ I VV+ +P +G L L Sbjct: 59 LGDWRLEGCTMYVTLEPCQM------CAGALVQSRIDEVVIGSMNPKAGCAGSVLNLLQV 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAG 168 + I ++E E + L + EK+ + + + A Sbjct: 113 DNFNHQVKITRGVLEEECSMMLSDFFRELREKKKRLKMLAKQQAEQEQTRAD 164 >gi|225026664|ref|ZP_03715856.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353] gi|224956034|gb|EEG37243.1| hypothetical protein EUBHAL_00916 [Eubacterium hallii DSM 3353] Length = 178 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 66/158 (41%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAE 56 M + D +FM A++ ++ + + C+IV DG +I RG HAE Sbjct: 6 MRKYTEDEKFMKEAIKQAKKAEAIGDV--PIGCVIVHDGKIIARGYNKRNKDKTVLAHAE 63 Query: 57 VQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A ++ T Y+TLEPC CA I++ + RVV+ + Sbjct: 64 LLAMKKACKKLGDWRLEDCTMYITLEPCQM------CAGAIVQARVTRVVIGSMNAKAGC 117 Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 G L L + + +++ E L A+ + Sbjct: 118 GGSILNLLEMQEFNHQAEVERGVLQEECSEMLSAFFRK 155 >gi|225387328|ref|ZP_03757092.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme DSM 15981] gi|225046577|gb|EEG56823.1| hypothetical protein CLOSTASPAR_01081 [Clostridium asparagiforme DSM 15981] Length = 162 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 22/164 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D R+M A+R ++ L + C+IV + +I RG HAE+ A+ Sbjct: 2 TTDERYMKEAVRQAKKASAL--GEVPIGCVIVYEDKIIARGYNRRMVDQNVLSHAEIIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC P CA I++ + +VV+ +P +G Sbjct: 60 RKACKKMGDWRLENCTLYVTLEPC------PMCAGAIVQARVPQVVIGCMNPKAGCAGSV 113 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITL 154 L L + G ++ E + + K+ Sbjct: 114 LDMLHEDGFNHQVETKIGILGEECSAMMKEFFRALRVKKPKKKR 157 >gi|111018655|ref|YP_701627.1| hypothetical protein RHA1_ro01656 [Rhodococcus jostii RHA1] gi|110818185|gb|ABG93469.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus jostii RHA1] Length = 245 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 78/223 (34%), Gaps = 11/223 (4%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD 204 V+ + G P++ + + +RA +D +LVG GTV A+ Sbjct: 19 FYRDPPDGVRVNMVASLDGAAAFGGRVRPLSDPVDHQLLRAMRAYADVVLVGAGTVRAET 78 Query: 205 --P-ELT---CRLN----GLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDP 254 P +LT R GL P+ ++ + DS + + V+ + Sbjct: 79 YGPVQLTEEQARYRLERWGLDAPPPIAVV-TRTGNVPPDSPLFAGGVRPIVVTTRRVAET 137 Query: 255 VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A +I + D ++ L+ L RG +L EGG + H + LVD + L Sbjct: 138 RGAALGESADIVVAGDDSVEMPALMAALRDRGFGRILCEGGPTLLHDLVTHDLVDEMCLT 197 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGK 357 + + G +P+ + + D G+ Sbjct: 198 LAPRLAGPQTLPASSGPTVQAPRTLSLEHALINDDFLYLRYGR 240 >gi|260776578|ref|ZP_05885473.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC BAA-450] gi|260607801|gb|EEX34066.1| tRNA-specific adenosine-34 deaminase [Vibrio coralliilyticus ATCC BAA-450] Length = 169 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 S D FM A+ + V ++VK G ++ G G HAE+Q Sbjct: 6 FSPQDEFFMRRAMELAAQAE--AEGEVPVGAVLVKGGEIVAEGWNQSIGHHDATAHAEMQ 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 VLRKAGQVLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 117 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L + I +ME E + L A+ R Sbjct: 118 TVLNLFEHQAAYHYADIEQGLMEEECRGQLQAFFKR 153 >gi|166031359|ref|ZP_02234188.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC 27755] gi|166028764|gb|EDR47521.1| hypothetical protein DORFOR_01047 [Dorea formicigenerans ATCC 27755] Length = 157 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 35/152 (23%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M A++ ++ + + C+IV +I RG HAE+QA+ Sbjct: 2 TADEKYMREAIKQAKKAYAI--GEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELQAI 59 Query: 61 EEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC C+ I++ + RVVV +P +G Sbjct: 60 RKASKKMEDWRLEECTMYVTLEPCQM------CSGAIVQSRMTRVVVGCMNPKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E + + Sbjct: 114 LNLLQMPQFNHQVELTTGVLEEECSQMMKTFF 145 >gi|293376812|ref|ZP_06623032.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sanguinis PC909] gi|325845379|ref|ZP_08168678.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sp. HGF1] gi|292644564|gb|EFF62654.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sanguinis PC909] gi|325488594|gb|EGC91004.1| cytidine and deoxycytidylate deaminase zinc-binding region [Turicibacter sp. HGF1] Length = 162 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 22/147 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGE 65 +M AA+ ++ L + +IVKDG +I RG T+ HAE+ A+ +A E Sbjct: 6 YMQAAIEEAKKAQNL--GEVPIGAVIVKDGEIIARGYNLRETSQLSNAHAEMIAIAKANE 63 Query: 66 -----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL- 119 T YVTLEPC P CA I++ I VV DP G L Sbjct: 64 MVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRIPTVVFGAHDPKGGCCGTIYNLLD 117 Query: 120 ----SQKGIIVDRMMESEGKIFLHAYL 142 + + +V ++E E L + Sbjct: 118 ESKFNHRCELVSGVLEEECGQLLSDFF 144 >gi|209694336|ref|YP_002262264.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238] gi|208008287|emb|CAQ78433.1| tRNA-specific adenosine deaminase [Aliivibrio salmonicida LFI1238] Length = 177 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 27/159 (16%) Query: 3 VSSFDA-----RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CP 53 ++ D +M A+ + G V +IV +G +IG G G Sbjct: 1 MTDLDENKSATFYMQRAIELASIAEG--EGEVPVGAVIVLNGEIIGEGWNRSIGTHDATA 58 Query: 54 HAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 HAE+ A+++AG+ AT YVTLEPC P CA I++ I++V D Sbjct: 59 HAEMMAIKQAGQTVENYRLVNATLYVTLEPC------PMCAGAIVQSRIKQVFFGAADLK 112 Query: 109 VRVSGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142 SG + + +M E + L A+ Sbjct: 113 TGASGSVINLFTAATAFHFVECESGLMADECREQLQAFF 151 >gi|284046137|ref|YP_003396477.1| bifunctional deaminase-reductase domain protein [Conexibacter woesei DSM 14684] gi|283950358|gb|ADB53102.1| bifunctional deaminase-reductase domain protein [Conexibacter woesei DSM 14684] Length = 250 Score = 102 bits (254), Expect = 1e-19, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 74/207 (35%), Gaps = 10/207 (4%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 R +R + + A + D I + G S I LR Q+DA+LVG GT+ A+ Sbjct: 27 RAPAERPFVAVNFAATVDGRIAL-GGRSGAIGDDGDTEVFRRLRTQADALLVGTGTLAAE 85 Query: 204 -------DPEL-TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV 255 EL R P +++ +L L+ + + ++ +P Sbjct: 86 QYSRPIRRAELRAAREAIGLAPVPPLVVIARSGRLPLEIPLFQDPDAHAIVYTEVATEPP 145 Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILV-GRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 A + L L L GV SLL EGG + ++ LVD + L Sbjct: 146 AVPARVELQRIDPAAGEPTLTAALRHLRREHGVRSLLCEGGPQLLSGLLHEGLVDELFLT 205 Query: 315 RSQIVIGEGGIPSPLEEGYLEKNFMCV 341 + + G GG P+ L Sbjct: 206 VAPQLAGGGGEPTLTGGTALPSPAELT 232 >gi|298293688|ref|YP_003695627.1| bifunctional deaminase-reductase domain protein [Starkeya novella DSM 506] gi|296930199|gb|ADH91008.1| bifunctional deaminase-reductase domain protein [Starkeya novella DSM 506] Length = 241 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 14/209 (6%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 + ++ S D I S I G + +H LRA +D ++VG+GTVLADDP Sbjct: 21 HRPSPFVIAQLGQSLDGRIATPTGKSRDINGCCGMDHLHRLRAIADVVVVGVGTVLADDP 80 Query: 206 ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNI 265 +LT R + SP R ++DP + S S+ ++ I+ +EN + I Sbjct: 81 QLTTRR--VPGRSPARAVIDPSGRSSRQSRWLREDGCRR-IVFSENAH---GWPDEVERI 134 Query: 266 NIIYCDCR-DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324 + + +L+ L RG ++LVEGGA+ FI++ +VD + + S I++G G Sbjct: 135 GTDHDPAIFEPARLIAALAARGHRTVLVEGGASTISRFIDAGVVDRLHVCLSPIILGS-G 193 Query: 325 IPS----PLEEGYLEKNFMCVRRDYFGSD 349 P P++E L+ R Y D Sbjct: 194 RPGLDLRPIDE--LDDALRPRARTYLLDD 220 >gi|304311855|ref|YP_003811453.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma proteobacterium HdN1] gi|301797588|emb|CBL45809.1| Cytidine/deoxycytidylate deaminase, zinc-binding protein [gamma proteobacterium HdN1] Length = 171 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 54/128 (42%), Gaps = 17/128 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 S+ D R+M AL +R G + V ++V+DG IG G G HAE+ Sbjct: 15 FSAEDRRWMERALALAR--QGAEAGEVPVGAVVVRDGEAIGEGFNCPIGTHDPTAHAEIC 72 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL AG GAT YV+LEPC+ CA I+ I RVV +P Sbjct: 73 ALRAAGRAIENYRLAGATLYVSLEPCAM------CAGAIVHARIDRVVYAAMEPKAGAVA 126 Query: 114 RGLQWLSQ 121 + Q Sbjct: 127 STQNFFEQ 134 >gi|160914820|ref|ZP_02077034.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991] gi|158433360|gb|EDP11649.1| hypothetical protein EUBDOL_00828 [Eubacterium dolichum DSM 3991] Length = 152 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 +FM A++ ++ + + C+IVKD +I RG HAE+ A+E+A Sbjct: 3 EKFMVEAIKEAKKAELIDEV--PIGCVIVKDDKIIARGHNLRESKQRSTAHAEIIAIEKA 60 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + + G + YVTLEPC P C+ I++ I VV DP + Sbjct: 61 CRKLKSWRLEGCSLYVTLEPC------PMCSGAILQSRIEHVVYGAKDPKGGCMESCMNM 114 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLTR 144 KG ++ ++E E L + R Sbjct: 115 YEVKGFNHYPDVIGGVLEDECGSLLKTFFKR 145 >gi|19113382|ref|NP_596590.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Schizosaccharomyces pombe 972h-] gi|54036317|sp|Q9P7L3|RIB7_SCHPO RecName: Full=Putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; AltName: Full=HTP reductase gi|7106075|emb|CAB76046.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase [Schizosaccharomyces pombe] Length = 268 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 77/235 (32%), Gaps = 28/235 (11%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRL 211 I ++ G + ++ S HLLR + D I+VG T D+P LT +L Sbjct: 21 WAQSINGRIGYVVESPSLGQLRLSSKESFVMTHLLRTKFDGIMVGSRTAENDNPSLTAKL 80 Query: 212 NGLQ--------EHSPMRIILDPHFKLSLDS-KIIKTALL----APVIIV---------T 249 P+ II+D + +L S K+I+ A P+IIV Sbjct: 81 PDPANPDCLLPLNKQPIPIIVDSNLRLDYASLKVIRLARERLGKPPLIIVAPSIWQQVQH 140 Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKK-----LLTILVGRGVTSLLVEGGAAVAHSFIN 304 ++ + I + L L+ GV ++VEGGA + Sbjct: 141 DSKLKEAVKLIQSVGGRCIIRNEDSPDSWSDYVALDKLLQNGVNRIMVEGGAELLAKAFG 200 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEYIGKNL 359 S +D+ ++ + + ++ G DV Sbjct: 201 STDIDAYVVTIVPKIF-SCSNTTEIKNLNNLNLTTNSHWYPCGPDVIFTNYSDEF 254 >gi|330445259|ref|ZP_08308911.1| tRNA-specific adenosine deaminase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489450|dbj|GAA03408.1| tRNA-specific adenosine deaminase monomer [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 163 Score = 101 bits (253), Expect = 1e-19, Method: Composition-based stats. Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 22/148 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66 M A+ + G V ++V +G VIG G + HAE+ AL +AG+ Sbjct: 1 MRRAMELAAKAEG--EGEVPVGAVVVHNGQVIGEGWNRSIGQHDATAHAEIMALRQAGKV 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 T YVTLEPC P CA ++ + +VV DD +G + LS Sbjct: 59 LENYRLLDTTVYVTLEPC------PMCAGAMVHSRVGKVVYGADDLKTGAAGSTMNLLSY 112 Query: 122 KGI-----IVDRMMESEGKIFLHAYLTR 144 G+ +V ++ E + L A+ R Sbjct: 113 DGVNHHVGLVSGVLADECRAQLQAFFKR 140 >gi|238922727|ref|YP_002936240.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium rectale ATCC 33656] gi|238874399|gb|ACR74106.1| cytidine and deoxycytidylate deaminase family protein [Eubacterium rectale ATCC 33656] Length = 162 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 19/131 (14%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54 M ++ D ++M A++ ++ L + C+IV +I RG T H Sbjct: 1 MEQTNMTQDEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAH 58 Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ A+ +A ++ T YVTLEPC CA I++ I RVV+ +P Sbjct: 59 AELSAIRKASKKTGDWRLEECTMYVTLEPCQM------CAGAIVQARIPRVVIGAMNPKA 112 Query: 110 RVSGRGLQWLS 120 +G + L Sbjct: 113 GCAGSIINLLQ 123 >gi|218283248|ref|ZP_03489309.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989] gi|218216003|gb|EEC89541.1| hypothetical protein EUBIFOR_01897 [Eubacterium biforme DSM 3989] Length = 158 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 ++ D ++M A++ ++ + + C+IVKD +I RG T HAE+ Sbjct: 1 MNMDDVKWMKEAIKQAKKAE--SYDEVPIGCVIVKDDKIIARGYNKRETLQQSIAHAEIM 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+++A ++ YVTLEPC P CA II+ I+ VV DP G Sbjct: 59 AIQKACKKLGTWRLEDCVLYVTLEPC------PMCAGAIIQSRIKEVVYGASDPKGGCVG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 I ++ES+ L + + Sbjct: 113 TCTNLFEVSEFNHHPIYRRGILESDCSDLLKHFFKK 148 >gi|84388906|ref|ZP_00991114.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01] gi|84376970|gb|EAP93842.1| Cytosine/adenosine deaminase [Vibrio splendidus 12B01] Length = 194 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 22/165 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D FM A+ ++ V ++VK+G +I G G HAE++ Sbjct: 6 FTPQDEIFMRRAIEVAKQAE--KEGEVPVGAVLVKEGEIISEGWNRSIGSHDATAHAEIE 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 TLRKAGQALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 L + + ++E E + L A+ R+ ++ Sbjct: 118 TVLNLFESQASYHYADVENGLLEQECRDQLQAFFKRRRKEIKEKR 162 >gi|302672151|ref|YP_003832111.1| CMP/dCMP deaminase zinc-binding domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302396624|gb|ADL35529.1| CMP/dCMP deaminase zinc-binding domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 190 Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 64/151 (42%), Gaps = 22/151 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALE 61 D +FM AA+ +R + C+IV +G +IGRG HAE+ A++ Sbjct: 26 QDIKFMKAAITQARKA--YVLGEVPIGCVIVYEGKIIGRGYNRRNTDKTTLAHAEITAIK 83 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AG+ G YVTLEPC CA I++ I V++ ++P +G L Sbjct: 84 RAGKVIGDWRLEGCKLYVTLEPCQM------CAGAIVQARIPEVIMAAENPKAGCAGSVL 137 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L+ G + +++ E L + Sbjct: 138 DILNNPGFNHQVQVKRGVLKDECAKMLKEFF 168 >gi|284033054|ref|YP_003382985.1| bifunctional deaminase-reductase domain-containing protein [Kribbella flavida DSM 17836] gi|283812347|gb|ADB34186.1| bifunctional deaminase-reductase domain protein [Kribbella flavida DSM 17836] Length = 242 Score = 101 bits (251), Expect = 2e-19, Method: Composition-based stats. Identities = 52/221 (23%), Positives = 87/221 (39%), Gaps = 16/221 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--DP-E 206 H+ S D + + S ++G + LR SD +LVG GTV + P Sbjct: 24 PHLRCNFVTSIDGAMEVE-GKSKALSGAADQEIFGKLRMLSDVVLVGAGTVRIEGYRPLR 82 Query: 207 LTC------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 L+ R GL E +P I+ L S + A + P I+ T P+ A Sbjct: 83 LSAARREWRRAQGLPE-NPTLAIVSSRLDLDPASPFLAEAPVRP-IVFTHTASPLDAREA 140 Query: 261 RKKNINIIYCD--CRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + +++ C DL+ ++ LV RG+ +L EGG + + + LVD + L + + Sbjct: 141 LAEVADVVVCGRAGVDLRAVMKTLVERGLPQVLSEGGPHLLGALTAADLVDEMCLSLAPV 200 Query: 319 VIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD--VCLEYIGK 357 + G G +R G D + Y+ + Sbjct: 201 LAGPGSGRITAGPTATAIRSFALRSLLAGDDGFLFFRYLRE 241 >gi|209966407|ref|YP_002299322.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Rhodospirillum centenum SW] gi|209959873|gb|ACJ00510.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase, putative [Rhodospirillum centenum SW] Length = 226 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 10/173 (5%) Query: 158 VSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQE- 216 +S D I AG + ++G +V RA +DA+LVG GT+ DDP LT R+ L++ Sbjct: 10 MSLDGCIDRAGGERLVLSGAEDLREVQAARAAADAVLVGAGTLRRDDPRLTVRVPELRQG 69 Query: 217 -------HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 P R+ L + D+ ++ P L ++ Sbjct: 70 RLDRGLPADPARVALTRSGTIDPDAAFFAGDGR-RFVLCPTAVAPGLRRRL-GAVATVLP 127 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + D ++ L G G+ LLVEGG V F+ S + L + +G+ Sbjct: 128 LERTDAPSIVAALEGVGIDRLLVEGGTQVLTLFLASGCFHRLRLAVAPFFVGQ 180 >gi|119946930|ref|YP_944610.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37] gi|119865534|gb|ABM05011.1| CMP/dCMP deaminase, zinc-binding [Psychromonas ingrahamii 37] Length = 176 Score = 101 bits (251), Expect = 3e-19, Method: Composition-based stats. Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 22/167 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D ++M+ AL + + V +IVKD ++ G + C HAE+ A++ Sbjct: 14 DQKWMAYALSLADKAE--SFGEIPVGAVIVKDNKIVAEGWNLSIINHNACAHAEIMAIQS 71 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG++ + T YVTLEPC+ CA ++ I+R+V D +G Sbjct: 72 AGQKIQNYRLIDCTLYVTLEPCAM------CAGALVHARIKRLVYGAGDYKTGAAGSVFN 125 Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 L+ + + + E + A+ R+ ++ + ++ S Sbjct: 126 LVQSEQLNHQLEVTAGVFAEESATKISAFFKRRRLEKKQLKKQLIDS 172 >gi|212710654|ref|ZP_03318782.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM 30120] gi|212686735|gb|EEB46263.1| hypothetical protein PROVALCAL_01720 [Providencia alcalifaciens DSM 30120] Length = 170 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M S D +M AL ++ P V L+VKD ++ G + HAE Sbjct: 1 MTQSEIDEYWMLQALELAKKAQ-NAGEIP-VGALLVKDNQLVATGWNHSIENHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + L++AG + T YVTLEPC CA +I I RVV D Sbjct: 59 IVTLKQAGTALQNYRLLDTTLYVTLEPCIM------CAGAMIHSRIGRVVYGAKDFKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 G + +SQ G+ + ++E L + Sbjct: 113 CGSFINIMSQPGLNHYVEVTSGVLEDACSSMLSEFF 148 >gi|159026320|emb|CAO88897.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 226 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 76/220 (34%), Gaps = 17/220 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R H ++ +A+S D I A + K ++ + DA L G T+ A Sbjct: 1 MSRPHTSVILAMSADGKIADAYQSAARFASATDKIRLEQHLSSMDATLFGANTLRAYHTS 60 Query: 207 LTCRLNGLQEH--------SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R H P++I+ +L K + +I E Sbjct: 61 LPIRHPDFLAHRQQRGLSSQPIQIVCSYSGQLDPQMKFFQQPFPRWLITAAE-----KVA 115 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 + + + + C D K + + G+ L + GG + S + L+D I L + Sbjct: 116 VWENRGLFELVLVCGDWKAIFSQFTALGIKKLAILGGGELIASLLAEDLIDEIYLTICPL 175 Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 ++G +PL + + + +++ L Y Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215 >gi|325662866|ref|ZP_08151435.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470918|gb|EGC74147.1| hypothetical protein HMPREF0490_02175 [Lachnospiraceae bacterium 4_1_37FAA] Length = 163 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M A+R ++ L + C+IV +I RG HAE+ A+ Sbjct: 2 NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A + T YVTLEPC C+ I++ +++VVV +P +G Sbjct: 60 RKASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L + + ++E E + ++ Sbjct: 114 FNLLQVPQFNHQVELEIGVLEEECSQLMKSFF 145 >gi|325183042|emb|CCA17497.1| riboflavinspecific deaminase/GTP cyclohydrolase II putative [Albugo laibachii Nc14] Length = 219 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 80/212 (37%), Gaps = 31/212 (14%) Query: 115 GLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPI 174 + I + E + + + K ITL A S D I + Sbjct: 1 MMTLHRTAEIDR---IWQECDDAMMRWTKDKSAKYPMITLTYAQSIDGCIAAKKGSPTIL 57 Query: 175 TGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDS 234 +G SK H+LR IL+GIGT+++D+P LT + L ++L S Sbjct: 58 SGSASKRMTHVLRTLHQGILIGIGTLISDNPSLTSQD------------LVSTSIVALQS 105 Query: 235 KIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEG 294 + VII E+ + ++ L + +L G S++VEG Sbjct: 106 RKKALEQAGAVIIECES-------ICTSEGAQHVH-----LSRAFELLHNYGFESIMVEG 153 Query: 295 GAAVAHSFINSR----LVDSIILYRSQIVIGE 322 GA + S + + LV +I+ + I IG Sbjct: 154 GAGIITSCLREQTIFSLVSLVIITIAPIFIGG 185 >gi|163814785|ref|ZP_02206174.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759] gi|158450420|gb|EDP27415.1| hypothetical protein COPEUT_00936 [Coprococcus eutactus ATCC 27759] Length = 181 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 63/149 (42%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQALEEA 63 ++M AL +R + + + C+IV +G +I RG HAE+ A+E+A Sbjct: 30 EKYMDKALAQARRA--YANGDVPIGCVIVHEGKIIARGFNKRNLKKTTLAHAEILAIEQA 87 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ T YVTLEPC CA I++ I +VV+ +P +G + Sbjct: 88 SKKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNPKAGCAGSIINL 141 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142 L + ++ + E E + + Sbjct: 142 LQMQQFNHQVDVIRGVREQECSGMMKEFF 170 >gi|331086590|ref|ZP_08335668.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410423|gb|EGG89855.1| hypothetical protein HMPREF0987_01971 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 163 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M A+R ++ L + C+IV +I RG HAE+ A+ Sbjct: 2 NQDEKYMKEAIRQAKKAYAL--KEVPIGCVIVYQDKIIARGYNRRTIDKNTLAHAELIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A + T YVTLEPC C+ I++ +++VVV +P +G Sbjct: 60 KKASRKMDDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNPKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L + + ++E E + ++ Sbjct: 114 FNLLQVPQFNHQVELEIGVLEEECSQLMKSFF 145 >gi|291526516|emb|CBK92103.1| Cytosine/adenosine deaminases [Eubacterium rectale DSM 17629] gi|291527005|emb|CBK92591.1| Cytosine/adenosine deaminases [Eubacterium rectale M104/1] Length = 157 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 17/125 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D ++M A++ ++ L + C+IV +I RG T HAE+ A+ Sbjct: 2 TQDEKYMKQAIKQAKKAYALDEV--PIGCVIVAGDKIIARGYNRRNTDKNPLAHAELSAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A ++ T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 60 RKASKKTGDWRLEECTMYVTLEPC------QMCAGAIVQARIPRVVIGAMNPKAGCAGSI 113 Query: 116 LQWLS 120 + L Sbjct: 114 INLLQ 118 >gi|261417404|ref|YP_003251087.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373860|gb|ACX76605.1| CMP/dCMP deaminase zinc-binding protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 210 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 22/158 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEV 57 SS D +FM ALR ++ + + C+IVKDG+VIG+G HAE+ Sbjct: 47 NFSSEDEKFMRMALRQAQ--IAFDMKEIPIGCVIVKDGVVIGKGYNQVEQLKDATAHAEI 104 Query: 58 QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ A G T YVTLEPC P CA I+ + R+V D Sbjct: 105 IAIGTAASTLDNWRLDGCTLYVTLEPC------PMCAGAILNSRVSRIVYGSPDSRFGGC 158 Query: 113 GRGL-----QWLSQKGIIVDRMMESEGKIFLHAYLTRQ 145 G + L + + ++ E L + + Sbjct: 159 GTTIDVITGNALKRAVEVTGGILADECLGLLKGFFQQM 196 >gi|169836056|ref|ZP_02869244.1| riboflavin biosynthesis protein RibD [candidate division TM7 single-cell isolate TM7a] Length = 66 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 37/66 (56%), Positives = 47/66 (71%), Gaps = 3/66 (4%) Query: 30 SVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARG---ATAYVTLEPCSHYGRSP 86 V ++V+DG VIG G Y G PHAEV ALEEA + ++ AT YVTLEPCSHYG++P Sbjct: 1 MVGAVVVQDGKVIGTGYHKYFGGPHAEVYALEEAAQNSKDLSNATIYVTLEPCSHYGKTP 60 Query: 87 PCAQFI 92 PCA+ + Sbjct: 61 PCAEKL 66 >gi|149190045|ref|ZP_01868322.1| cytosine/adenosine deaminase [Vibrio shilonii AK1] gi|148836075|gb|EDL53035.1| cytosine/adenosine deaminase [Vibrio shilonii AK1] Length = 178 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 61/156 (39%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D RFM A+ + + V ++V+ G +I G G HAE+Q Sbjct: 10 FNDEDRRFMQRAMELANHAE--SEGEVPVGAVLVRGGKIIAEGWNQSIGNHDATAHAEMQ 67 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++RVV D +G Sbjct: 68 VIRKAGQNLENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAG 121 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E + L A+ R Sbjct: 122 TVLNLFESQASYHYADVESGLLEEECRHQLQAFFKR 157 >gi|217031852|ref|ZP_03437355.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128] gi|216946504|gb|EEC25106.1| hypothetical protein HPB128_199g60 [Helicobacter pylori B128] Length = 276 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 108/278 (38%), Gaps = 47/278 (16%) Query: 68 RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG-RGLQWLSQKGIIV 126 + +TLEPC+ YG++P C++ + +RVV+ ++ + + G LQ + II Sbjct: 27 KDCVFLITLEPCNSYGKTPACSELLEILKPKRVVIAAEENEAKKGGLARLQKARIETIIC 86 Query: 127 DRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLL 186 + + L + Q + + L + ++ D G ITG S H Sbjct: 87 HNLENKAKDLLLPFRIMEQKGRFNLFKLALRMNGDYHHG-------KITGQKSVIFTHNQ 139 Query: 187 RAQSDAILVGIGTVLADDPELTCRLNG--LQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244 RA + +++ T+ D+P L R Q +P IL + +SK+ AP Sbjct: 140 RAICNTLIISGKTIRTDNPLLDARFCDHFYQNKNPNIAILSKR-SIDPNSKVFS----AP 194 Query: 245 VIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 +V DP +DL + +G +EGG + S N Sbjct: 195 NRLVNTFHDP------------------KDLP------LEKGFN--FIEGGWELFESLRN 228 Query: 305 SRLVDSIILYRSQIVIGEG----GIPSPLEEGYLEKNF 338 +D+++L+ +IGE + +P + L Sbjct: 229 K--IDALLLHSHASMIGEAFSVLALKTPFKGRLLHAQI 264 >gi|251794142|ref|YP_003008873.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2] gi|247541768|gb|ACS98786.1| CMP/dCMP deaminase zinc-binding [Paenibacillus sp. JDR-2] Length = 156 Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 17/130 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M D +M A+ ++ + + ++VK+G V+GRG T + HAE Sbjct: 1 MIREQEDQAWMQLAIEEAKKAEQI--GEVPIGAILVKNGEVVGRGYNLRETNHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ EA E T YVTLEPC P CA I++ ++RVV DP Sbjct: 59 MVAIREACERLGAWRLLDCTLYVTLEPC------PMCAGAIVQSRVKRVVYGTGDPKAGC 112 Query: 112 SGRGLQWLSQ 121 +G + L + Sbjct: 113 AGTLMNLLQE 122 >gi|319427113|gb|ADV55187.1| CMP/dCMP deaminase zinc-binding protein [Shewanella putrefaciens 200] Length = 169 Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 M + D +M A++ + + V ++VKDG I G + HAE Sbjct: 1 MEQTELDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + L AG++ AT Y+TLEPC+ CA ++ I RVV D Sbjct: 59 ILCLRSAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 +G + L + ++ L + R Sbjct: 113 AGTVVNLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 150 >gi|158316923|ref|YP_001509431.1| hypothetical protein Franean1_5167 [Frankia sp. EAN1pec] gi|158112328|gb|ABW14525.1| bifunctional deaminase-reductase domain protein [Frankia sp. EAN1pec] Length = 270 Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 21/199 (10%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PEL 207 H+ S D I + S + G LR SD +LVG GT +D P L Sbjct: 56 PHVRSNFVTSADGAIEI-NGRSADLGGPADLRVFRTLRWLSDVVLVGAGTARTEDYGPVL 114 Query: 208 -------TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAF 260 GL P+ ++ +L D+++ TA + P+++ E P+ A Sbjct: 115 VPAERRERRAAAGLTPVPPVAVV-SGRLELDPDARLF-TAAVRPLLLTCEAAPPLRRRAL 172 Query: 261 RK-KNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 I + + + + L L RG+ +L EGG + F + L+D + L + ++ Sbjct: 173 EPVAEIVVCGDETVEPRAALDALAERGLLRVLTEGGPRLHAQFAQAGLLDELCLTLAPVL 232 Query: 320 IGEGGI--------PSPLE 330 G G + P+P+ Sbjct: 233 AGPGRLGLMQGPVWPAPVG 251 >gi|296164645|ref|ZP_06847211.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899953|gb|EFG79393.1| riboflavin biosynthesis protein RibD [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 227 Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 63/149 (42%), Gaps = 7/149 (4%) Query: 173 PITGFISKNQVHLLRAQSDAILVGIGTVLADD--PELTCRLNGLQEHSPMRIILDPHFKL 230 P++ + + +LR +D +LVG GT A++ P RL P ++ +L Sbjct: 45 PLSCPTDQQLLKILRGFADVVLVGAGTARAENYGP---VRLPDAGPTPPPIAVISRSGRL 101 Query: 231 SLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290 S+++ P+++ ++ + + D D+ + + +L RG+ + Sbjct: 102 P--SRLLSEPGRPPIVVTCAGAAAARDQPGDRRQVLVAGEDSVDVSRAVALLRARGMHRI 159 Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIV 319 L EGG V + + VD I + + + Sbjct: 160 LCEGGPTVLDELVEADAVDEICVTLAPNL 188 >gi|331092011|ref|ZP_08340842.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium 2_1_46FAA] gi|330402212|gb|EGG81783.1| hypothetical protein HMPREF9477_01485 [Lachnospiraceae bacterium 2_1_46FAA] Length = 155 Score = 99 bits (248), Expect = 5e-19, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 66/152 (43%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D ++M A++ ++ + + C+IV + +I RG T HAE+ A+ Sbjct: 2 NQDEKYMREAIKQAKKAYEINEV--PIGCVIVCEDKIISRGYNRRTTDKNPLAHAEMIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ T YVTLEPC C+ I++ +++VVV + +G Sbjct: 60 KKASKKVGDWRLEDCTMYVTLEPCQM------CSGAIVQSRMKKVVVGCMNAKAGCAGSI 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++E E + + + Sbjct: 114 LNLLQMDEFNHQVELETGVLEEECSLLMKNFF 145 >gi|145224494|ref|YP_001135172.1| hypothetical protein Mflv_3913 [Mycobacterium gilvum PYR-GCK] gi|315444825|ref|YP_004077704.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp. Spyr1] gi|145216980|gb|ABP46384.1| bifunctional deaminase-reductase domain protein [Mycobacterium gilvum PYR-GCK] gi|315263128|gb|ADT99869.1| pyrimidine reductase, riboflavin biosynthesis [Mycobacterium sp. Spyr1] Length = 257 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 73/196 (37%), Gaps = 19/196 (9%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGC-----GSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 V + + + G S + G + LR +D I+VG TV Sbjct: 27 HYPYPDGLDSCWVRANMITSVDGGATSAGKSGGLGGDGDRALFSALRELADVIVVGAQTV 86 Query: 201 LADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 ++D L + G E P+ +L +L D+K+ + P+I+ + Sbjct: 87 RSEDYSGVRLSASARLARQQRGQSEVPPIA-VLTRSGRLDRDAKLFTRTDVPPLILTSTR 145 Query: 252 DDPVLALAF----RKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRL 307 + + D D + LT+L RG+ +L EGG + F + L Sbjct: 146 ALDDTRRLLGSVAEVLDASGAQPDSVDPAQALTLLAERGLRRVLTEGGPGILGMFTDDDL 205 Query: 308 VDSIILYRSQIVIGEG 323 VD + + + +++G G Sbjct: 206 VDELCVTVAPLLLGGG 221 >gi|260437836|ref|ZP_05791652.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876] gi|292809861|gb|EFF69066.1| tRNA-specific adenosine deaminase [Butyrivibrio crossotus DSM 2876] Length = 157 Score = 99 bits (248), Expect = 6e-19, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63 FM A+R ++ L + C+IV DG +I RG HAE+ A++ A Sbjct: 5 EGFMKEAIRQAKKAEKLNEV--PIGCVIVYDGKIIARGYNRRNTDKSTLAHAEIIAIKRA 62 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + T YVTLEPC CA I++ I +VV+ + +G + Sbjct: 63 SKVIKDWRLEDCTLYVTLEPCQM------CAGAIVQARIPKVVIGTMNSKAGCAGSVINV 116 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142 L K I ++ E K + + Sbjct: 117 LQMKEFNHQVDICKGVLADECKEMMQNFF 145 >gi|90407089|ref|ZP_01215278.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3] gi|90311811|gb|EAS39907.1| hypothetical protein PCNPT3_02575 [Psychromonas sp. CNPT3] Length = 182 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D ++M AL + L V ++VKD VI G ++ C HAEV A+ E Sbjct: 22 DEKWMQYALLLADKAEAL--GEVPVGAVLVKDNEVIAEGWNLSILSHDACAHAEVMAVRE 79 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG + + T YVTLEPC P CA ++ I+R+V D +G Sbjct: 80 AGHKLQNYRLIDCTLYVTLEPC------PMCAGALVHARIKRLVYGAPDLKTGAAGSVFN 133 Query: 118 WLSQ 121 LS Sbjct: 134 LLSH 137 >gi|19075322|ref|NP_587822.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe 972h-] gi|74627116|sp|P87241|RIB2_SCHPO RecName: Full=Diaminohydroxyphosphoribosylamino-pyrimidine deaminase; Short=DRAP deaminase; AltName: Full=Riboflavin-specific deaminase gi|2213559|emb|CAB09771.1| CMP/dCMP deaminase family [Schizosaccharomyces pombe] Length = 405 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 8/125 (6%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQA-----LE 61 +M AL ++ T + V +IV++G ++ G + G HAE A L+ Sbjct: 259 EEYMLKALNEAKKCEP-TDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAEECAIEKFMLK 317 Query: 62 EAGEEARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 + GA Y T+EPCS + C I++ VV+ +PD+ V G+ L Sbjct: 318 NPTDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLLK 377 Query: 121 QKGII 125 + GI+ Sbjct: 378 KAGIV 382 >gi|171463305|ref|YP_001797418.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192843|gb|ACB43804.1| CMP/dCMP deaminase zinc-binding [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 152 Score = 99.6 bits (247), Expect = 6e-19, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56 M ++ D ++M A+ ++ + V ++VKDG VI + HAE Sbjct: 1 MTQAALDQQYMRMAIEQAQLAAQ--AGEVPVGAVLVKDGQVIAKAFNKPIANHDPSAHAE 58 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL EA G+T YVTLEPC+ C+ ++ I RVV DP Sbjct: 59 MLALREAALAQENYRIPGSTLYVTLEPCAM------CSGAMLHARIDRVVFGAPDPKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 +G L + K I + +M E L + R Sbjct: 113 AGSVLDLFASKQINHQTSVEGGIMSEECGQLLRDFFKR 150 >gi|268593242|ref|ZP_06127463.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131] gi|291311137|gb|EFE51590.1| tRNA-specific adenosine deaminase [Providencia rettgeri DSM 1131] Length = 160 Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M D +M A+ + L V ++VKD ++ G + HAE Sbjct: 1 MTQIEIDEYWMQQAIELALKAQDL--GEIPVGAVLVKDNHLVASGWNRSIIDHNPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL++AG+E T YVTLEPC CA +I I RVV D Sbjct: 59 IMALQQAGQELSNYRLLDTTLYVTLEPCIM------CAGAMIHSRISRVVYGAKDFKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 G L + Q G+ + ++E + L A+ Sbjct: 113 CGSYLDIMGQAGLNHYVDVTGGVLEQQCSSMLSAFF 148 >gi|320169275|gb|EFW46174.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 1344 Score = 99.6 bits (247), Expect = 7e-19, Method: Composition-based stats. Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 4/132 (3%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEA 63 S D R+M+ A++ + V T V C+IV++G+V+ G + G HAE AL++ Sbjct: 1190 SNDWRYMAMAIQQANQSVP-VETAYCVGCVIVQNGVVLSSGFSRELPGNTHAEECALKKL 1248 Query: 64 -GEEARGATAYVTLEPC-SHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 E+A+GAT Y T+EPC + + C II I RVV+ V +P V G+ L + Sbjct: 1249 TPEQAQGATVYTTMEPCTTRLSGNVCCTDHIINNRIARVVIGVREPAEFVVCIGIDRLEK 1308 Query: 122 KGIIVDRMMESE 133 GI V R+ E Sbjct: 1309 AGIQVTRLSGLE 1320 >gi|269962366|ref|ZP_06176716.1| zinc-binding domain protein [Vibrio harveyi 1DA3] gi|269832862|gb|EEZ86971.1| zinc-binding domain protein [Vibrio harveyi 1DA3] Length = 164 Score = 99.6 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 40/166 (24%), Positives = 63/166 (37%), Gaps = 22/166 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGEE 66 M A+ + V ++VKDG ++ G A+ HAE+Q L +AGE Sbjct: 1 MRRAMELAEQAE--AEGEVPVGAVLVKDGEIVAEGWNRSICAHDATAHAEIQTLRKAGEA 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 59 LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAGTVLNLFKS 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 + ++E E + L A+ R+ ++ + D Sbjct: 113 QAAYHYATVESGLLEDECRSQLQAFFKRRRKEIKAKKQAQRANDDE 158 >gi|269965211|ref|ZP_06179345.1| zinc-binding domain protein [Vibrio alginolyticus 40B] gi|269830197|gb|EEZ84424.1| zinc-binding domain protein [Vibrio alginolyticus 40B] Length = 169 Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 22/148 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66 M A+ + V ++VKDG +I G G HAE+Q L +AG++ Sbjct: 1 MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSIGTNDATAHAEIQTLRKAGQK 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 59 LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144 ++ ++E E + L A+ R Sbjct: 113 QAAYHYALVEKGLLEDECRTQLQAFFKR 140 >gi|186681708|ref|YP_001864904.1| deaminase-reductase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186464160|gb|ACC79961.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme PCC 73102] Length = 247 Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 30/241 (12%) Query: 145 QVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA-- 202 ++ R H T+ +A+S D I + K + A SDA+L G GT+ A Sbjct: 1 MLQHRPHTTVVLAMSADGKIADFRRSPARFGSRVDKAHLEKQIAASDAVLFGAGTLRAYG 60 Query: 203 -----DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT------- 249 DP L R + P+ I+ L+ + K + ++ Sbjct: 61 TTLTVSDPTLVRLRAQEGKPPQPVHIVTTHSGNLNPEINFFKQPVRRWLLTTALGKLSWK 120 Query: 250 -----------ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAV 298 F + + D+ L L +T L+V GG + Sbjct: 121 GRCLQTLPSTLGTGTQECPPEFEQILVFETPTREIDIPAALKHLANIDITRLVVLGGGEL 180 Query: 299 AHSFINSRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEY 354 S + L+D + L +++G P+P+E L + +V L Y Sbjct: 181 VASLLGLDLIDELWLTVCPLILGGSTAPTPVEGKGFLPDLAPKLQLLEVHTVEQEVFLHY 240 Query: 355 I 355 Sbjct: 241 R 241 >gi|67921574|ref|ZP_00515092.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii WH 8501] gi|67856686|gb|EAM51927.1| bifunctional deaminase-reductase, C-terminal [Crocosphaera watsonii WH 8501] Length = 224 Score = 99.2 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 82/221 (37%), Gaps = 12/221 (5%) Query: 146 VEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDP 205 +E R T+ +A + D I + I KN + + D ++ G GT+ A Sbjct: 1 MENRPKTTVILATTADGKIADFQRNAARFGSDIDKNHLEKQISLVDGVIFGAGTLRAYGT 60 Query: 206 ELTCRLNGL--------QEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 LT R L + P+ I++ K++ + + + +I E + Sbjct: 61 TLTVRNTELLAQRKQENKPSQPINIVVSASGKIADNLRFFSQPVPHWLITTEEGTKNDTS 120 Query: 258 LAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 + + +L L G+ +L + GG + S + L+D L Sbjct: 121 NFEKVLTFSPEETGKINLVAAFKHLKEIGLNNLAILGGGELVASCLEENLIDEFCLTLCP 180 Query: 318 IVIGEGGIPSPLEE-GYLEKN---FMCVRRDYFGSDVCLEY 354 ++G P+P+E G+L K+ + + ++ L Y Sbjct: 181 YILGGKTAPTPVEGKGFLSKHSQKLELLSLEQIEQEIFLHY 221 >gi|304405747|ref|ZP_07387405.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9] gi|304344990|gb|EFM10826.1| CMP/dCMP deaminase zinc-binding [Paenibacillus curdlanolyticus YK9] Length = 148 Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 21/153 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAGEE 66 M+ A+ +R + + +IV++G VIGRG T + HAE+ A+ EA + Sbjct: 1 MAEAIEEARKAEAI--GEVPIGAVIVRNGEVIGRGYNLRETDHDATAHAEIIAIREASKH 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 +T YVTLEPC P CA I++ ++RVV DP +G + L + Sbjct: 59 IEAWRLLDSTLYVTLEPC------PMCAGAIVQSRVKRVVYGTHDPKAGCAGTLMNLLQE 112 Query: 122 ----KGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 + + E L R++ ++ Sbjct: 113 PRFNHETELTSGVMQEECASLLTTFFRRLRRKP 145 >gi|160894462|ref|ZP_02075238.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50] gi|156863773|gb|EDO57204.1| hypothetical protein CLOL250_02014 [Clostridium sp. L2-50] Length = 214 Score = 99.2 bits (246), Expect = 1e-18, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 64/158 (40%), Gaps = 26/158 (16%) Query: 3 VSSFDAR----FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPH 54 +S D + +M A++ ++ + + C+IVKD VI RG H Sbjct: 51 MSGEDRKMYEIYMKKAIKLAQKA--YVQGDVPIGCVIVKDNKVIARGYNKRNLKKTTLAH 108 Query: 55 AEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ A+E+A ++ T YVTLEPC CA I++ I +VV+ + Sbjct: 109 AELLAIEQASKKLGDWRLEDCTMYVTLEPCQM------CAGAIVQARIPKVVIGCMNKKA 162 Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 +G L + + V + + E + + Sbjct: 163 GCAGSILNMFDMSAFNHQVETVYGICQEECSSLMKDFF 200 >gi|323492402|ref|ZP_08097552.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG 20546] gi|323313363|gb|EGA66477.1| tRNA-specific adenosine-34 deaminase [Vibrio brasiliensis LMG 20546] Length = 181 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/154 (24%), Positives = 61/154 (39%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D FM A+ ++ V ++VKDG +I G G HAE+Q Sbjct: 6 FTPQDELFMRRAMELAQHAE--EQGEVPVGAVLVKDGEIIAEGWNESIGSHDATAHAEMQ 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG T YVTLEPC P CA ++ ++R+V D +G Sbjct: 64 TIRKAGLALENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAPDLKAGAAG 117 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L + + ++E E ++ L ++ Sbjct: 118 TVLNLFEHQAAYHYADVEQGLLEDECRVQLQSFF 151 >gi|325068553|ref|ZP_08127226.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /5-amino-6-(5-phosphoribosylamino)uracil reductase [Actinomyces oris K20] Length = 111 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 39/109 (35%), Positives = 52/109 (47%), Gaps = 4/109 (3%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQAL 60 ++ M ALR + NP V C+I+ DG V+ G G HAEV AL Sbjct: 3 SFTTVQTAAMQRALRAAASPDAPPGPNPRVGCVILSPDGDVLAEGHHRGAGTAHAEVDAL 62 Query: 61 EEAGEEA---RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 RG TA VTLEPC+H R+ PC Q +++ G+ V+ DD Sbjct: 63 ANLAAAGASARGTTAVVTLEPCNHQSRTGPCVQALLDAGVAEVIYAQDD 111 >gi|205371946|ref|ZP_03224765.1| hypothetical protein Bcoam_00240 [Bacillus coahuilensis m4-4] Length = 160 Score = 98.8 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 FM A+ + + + +IVKDG VI G T HAEV A+++A Sbjct: 4 EHFMKLAIEEALKAKEILEV--PIGAVIVKDGEVIATGHNLRETTQNAITHAEVIAIQKA 61 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E+ GA YVTLEPC P C+ I++ I +V+ DP +G + Sbjct: 62 CEKLGTWRLEGAELYVTLEPC------PMCSGAIVQSRIEKVIYGAKDPKAGCAGSLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142 L + + ++E E L ++ Sbjct: 116 LQDSRFNHQCEVEHGILEVECGELLSSFF 144 >gi|295094398|emb|CBK83489.1| Cytosine/adenosine deaminases [Coprococcus sp. ART55/1] Length = 169 Score = 98.4 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 32/166 (19%) Query: 1 MPVSSFDA----------RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG 50 M ++ D ++M A+ ++ + + + C+IV D +I RG Sbjct: 1 MEDTNIDELTPEERRIHEKYMDKAIAQAKRA--YANGDVPIGCVIVHDDRIIARGFNKRN 58 Query: 51 ----GCPHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVV 101 HAE+ A+E+A ++ T YVTLEPC CA I++ I VV Sbjct: 59 LKKTTLAHAEILAIEQASKKLGDWRLEECTMYVTLEPCQM------CAGAIVQARIPNVV 112 Query: 102 VCVDDPDVRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 + +P +G + L + + ++ + + E + ++ Sbjct: 113 IGCMNPKAGCAGSIINLLDMKQFNHQVEVIRGVRQDECSEMMKSFF 158 >gi|117617810|ref|YP_857319.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559217|gb|ABK36165.1| tRNA-specific adenosine deaminase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 179 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 41/172 (23%), Positives = 65/172 (37%), Gaps = 22/172 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 D R+M A+ + G+ V ++V G V+G G + C HAEV Sbjct: 11 SQREQDERWMRHAMALAARAEGI--GEIPVGAVLVLGGEVVGEGWNRSISEHDACAHAEV 68 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ AG + T YVTLEPC CA +I ++RVV D + Sbjct: 69 MAIRAAGVRLQNYRLLDTTLYVTLEPCCM------CAGALIHSRVKRVVYGARDLKTGAA 122 Query: 113 GRGLQWLSQ----KGIIVD-RMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 G + L G+ + ++ L + R+ ++ L + S Sbjct: 123 GSVFEILQDPRHNHGVELTGGVLADACSAQLSDFFRRRRAEKKAARLALQQS 174 >gi|289628393|ref|ZP_06461347.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv. aesculi str. NCPPB3681] Length = 60 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 ++ D +M+ AL +R + T NP V C+IV+DG ++G G G PHAEV Sbjct: 5 QAALDVHYMARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVH 60 >gi|166367634|ref|YP_001659907.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa NIES-843] gi|166090007|dbj|BAG04715.1| bifunctional deaminase-reductase-like [Microcystis aeruginosa NIES-843] Length = 226 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 42/220 (19%), Positives = 79/220 (35%), Gaps = 17/220 (7%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 R H T+ +A+S D I A + K ++ ++ DA L G T+ A Sbjct: 1 MNRPHTTVILAMSADGKIADAYQSAARFASATDKMRLEQHLSRMDAALFGANTLRAYHTS 60 Query: 207 LTCRLNG----LQEH----SPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 L R Q+ P++I+ +L K + +I E Sbjct: 61 LPIRHADFLAYRQQRGLSPQPIQIVCSHSGQLDPRMKFFQQPFPRWLITAAE-----KVA 115 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQI 318 A+ + + + C D K + + G+ L + GG + S + L+D I L + Sbjct: 116 AWENRGLFELVLVCGDWKAIFSQFTTLGIKKLAILGGGELIASLLAEDLIDEIHLTICPL 175 Query: 319 VIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 ++G +PL + + + +++ L Y Sbjct: 176 LLGGNKAATPLGGTGFMADSARKLRLLSVETVEAEIFLHY 215 >gi|323705214|ref|ZP_08116790.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] gi|323535640|gb|EGB25415.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacterium xylanolyticum LX-11] Length = 137 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 70/147 (47%), Gaps = 25/147 (17%) Query: 11 MSAALRFS----RWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 M AA+ + + V ++VKDGI+IGRG T HAE+ A+++ Sbjct: 1 MKAAIDEAIISFKLGEM------PVGAVVVKDGIIIGRGYNLKETEKDATQHAEINAIKD 54 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + GA+ YVTLEPC P CA IIE I+RV V + D +G Sbjct: 55 ACKSIGDWRLNGASLYVTLEPC------PMCAGAIIESRIKRVYVGAESRDNGAAGTVYD 108 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTR 144 L++K + +ME E K ++ + +R Sbjct: 109 LLNKKAEVYFGIMEDECKKLINDFFSR 135 >gi|209527439|ref|ZP_03275944.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima CS-328] gi|209492112|gb|EDZ92462.1| bifunctional deaminase-reductase domain protein [Arthrospira maxima CS-328] Length = 234 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 78/229 (34%), Gaps = 18/229 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202 R + T+ +A+S D I + AQ+DA+L G GT+ A Sbjct: 8 TRPYTTVILAMSADGKIADPMRSPARFGSNADIIHLERQIAQADAVLFGNGTLAAYGTVL 67 Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 L R + P +I+ K++ K + + P ++T Sbjct: 68 RVSSTELLGAREKNGKPPQPAQIVCSASGKINPTLKFFQQPV--PKWLLTTFLGGQPWKR 125 Query: 260 FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 F +I D + + L L RG+ L V GG + S + +D L Sbjct: 126 FSDHFDEVIVADDSNGVITWSEALQQLRDRGIQKLAVLGGGQLVASLMAYHAIDEFQLTV 185 Query: 316 SQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYIGKNLC 360 +++G P+P++ F + +V L Y K+ Sbjct: 186 CPLILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKSAL 234 >gi|300214872|gb|ADJ79288.1| Cytosine/adenosine deaminase [Lactobacillus salivarius CECT 5713] Length = 166 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 66/170 (38%), Gaps = 23/170 (13%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55 MP++ +FM AL ++ + + C+IVKDG +IGRG + HA Sbjct: 1 MPLTDEQKVKFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHA 58 Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 E+ A+EEA E +VTLEPC P C+ II I V DP Sbjct: 59 EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112 Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 G + L + + ++E+E L + EK Sbjct: 113 TVGTLMNLLEDSRFNHQSFVEKGILENECASILKDFFKSIREKMKKKRKN 162 >gi|156973452|ref|YP_001444359.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116] gi|156525046|gb|ABU70132.1| hypothetical protein VIBHAR_01142 [Vibrio harveyi ATCC BAA-1116] Length = 164 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 22/148 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEAGE- 65 M A+ + V ++VKDG +I G A+ HAE+Q L +AGE Sbjct: 1 MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGWNRSICAHDATAHAEIQTLRKAGEA 58 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 59 LGNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVYGAPDLKAGAAGTVLNLFES 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144 + + ++E E + L A+ R Sbjct: 113 QAAYHYATVENGLLEEECRSQLQAFFKR 140 >gi|172037934|ref|YP_001804435.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142] gi|171699388|gb|ACB52369.1| putative riboflavin-specific deaminase [Cyanothece sp. ATCC 51142] Length = 236 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 82/226 (36%), Gaps = 12/226 (5%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y Q+E R + +A++ D I + I +N + + D +L+G T+ Sbjct: 6 YREIQMENRPKTAVILAMTADGKIADFQRNAARFGSNIDQNHLEKQISLVDGVLLGARTL 65 Query: 201 LA--------DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 A D L R + P+ I++ K++ + + + ++ E Sbjct: 66 RAFGTTVIVKDAELLANRKQNNKPSQPINIVVSASGKIADNLRFFSQPVPHWLMTTQEGT 125 Query: 253 DPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSII 312 + + I +L + L L G++ L + GG + + + L+D + Sbjct: 126 KEQTSKFEKVLTFPEIEAGKINLVEALKRLKELGLSHLAIIGGGELVANCLEQNLIDELW 185 Query: 313 LYRSQIVIGEGGIPSPLEEGYL----EKNFMCVRRDYFGSDVCLEY 354 L ++G P+P+E + + + ++ L Y Sbjct: 186 LTVCPYLLGGKTAPTPVEGMGFLSSHAQKLELLSLEQKEQEIFLHY 231 >gi|158319077|ref|YP_001511584.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs] gi|158139276|gb|ABW17588.1| CMP/dCMP deaminase zinc-binding [Alkaliphilus oremlandii OhILAs] Length = 154 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 + FM A+ ++ + ++VKD +IGRG T HAE+ A++ Sbjct: 3 LEENFMLEAIEEAKKA--FNKKEVPIGAVVVKDNEIIGRGHNLRETTKNSISHAEIMAIQ 60 Query: 62 EA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 EA G T YVT+EPC P CA I++ I++VV+ DP G + Sbjct: 61 EACKFLGGWRLTDCTLYVTIEPC------PMCAGAILQSRIQKVVIGAMDPKAGACGSLV 114 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYL 142 L+ I ++E E + + + Sbjct: 115 NLLNDSRFNHQTEIEQGVLEEECSLLMKEFF 145 >gi|218132702|ref|ZP_03461506.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC 43243] gi|217992428|gb|EEC58431.1| hypothetical protein BACPEC_00563 [Bacteroides pectinophilus ATCC 43243] Length = 160 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEVQAL 60 + D ++M A++ +R +P + C+IV +I RG HAE+ A+ Sbjct: 7 NDDEKYMKEAIKQARKA-YKIGESP-IGCVIVYQNKIIARGYNRRNIDKTTLGHAEITAI 64 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A + T YVTLEPC CA I++ I RVV+ +P +G Sbjct: 65 RKASKVIGDWRLEDCTIYVTLEPC------QMCAGAIVQARIPRVVIGAMNPKAGCAGSV 118 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + ++ E + ++ Sbjct: 119 LNLLEIPQFNHQCDVERGVLADECSGLMSSFF 150 >gi|302384616|ref|YP_003820438.1| CMP/dCMP deaminase zinc-binding protein [Clostridium saccharolyticum WM1] gi|302195244|gb|ADL02815.1| CMP/dCMP deaminase zinc-binding protein [Clostridium saccharolyticum WM1] Length = 164 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 17/128 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 + D ++M AA+R + G P + C+IV + +I RG HAE+ A+ Sbjct: 2 TIDEKYMRAAIRQAEKA-GAMGEVP-IGCVIVYEDKIIARGYNRRTIDKNVLSHAEINAI 59 Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A G T YVTLEPC P CA I++ I +V++ + +G Sbjct: 60 RKACRKVGDWRLEGCTMYVTLEPC------PMCAGAIVQARIPKVIMGCMNAKAGCAGSV 113 Query: 116 LQWLSQKG 123 L Q G Sbjct: 114 LDLFHQDG 121 >gi|297543592|ref|YP_003675894.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841367|gb|ADH59883.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 148 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64 +FM AA+ + L V +IVKD +IGRG HAE+ A++EA Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDATAHAEIMAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K+ L + Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143 >gi|271967965|ref|YP_003342161.1| pyrimidine reductase riboflavin biosynthesis-like protein [Streptosporangium roseum DSM 43021] gi|270511140|gb|ACZ89418.1| Pyrimidine reductase riboflavin biosynthesis- like protein [Streptosporangium roseum DSM 43021] Length = 240 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 68/192 (35%), Gaps = 12/192 (6%) Query: 144 RQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD 203 + + + S D + G G + +LR +D ++VG TV + Sbjct: 18 YAYPDGPCVRVNMVASADGGTWLEGLSGGLSGG-GDRRIFGVLRGLADVVVVGAATVRTE 76 Query: 204 -----DPELTCRL--NGLQEHSPMRIILDPHFKLSLDSKIIKTALL-APVIIVTENDDPV 255 P + R G P+ ++ L L + A A I++T P Sbjct: 77 GYGPARPRESWRPLREGRPAAPPVAVV-TRRLDLDLTGPLFAEAEPYARTIVITCEAAPA 135 Query: 256 LALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIIL 313 + ++I D DL + L RG+ +L EGG + + LVD + L Sbjct: 136 ERREEAAGHADVIVAGRDRVDLAAAVKELGERGLGRVLCEGGPKINAQLAAAGLVDELCL 195 Query: 314 YRSQIVIGEGGI 325 S ++IG Sbjct: 196 TLSPMLIGGDAA 207 >gi|296136215|ref|YP_003643457.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12] gi|295796337|gb|ADG31127.1| CMP/dCMP deaminase zinc-binding protein [Thiomonas intermedia K12] Length = 187 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 42/155 (27%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P D FM AL ++ L V +IVKDG VI G G HAE+ Sbjct: 7 PDLEADRAFMRLALDQAQNAWLL--GEVPVGAVIVKDGKVIATGYNRPIGDHDPTAHAEI 64 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL +A T YVTLEPC+ CA ++ RVV DP + Sbjct: 65 VALRQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAA 118 Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 G + L+ I + + L + Sbjct: 119 GSVVDLFAEPRLNHHCDITPEIEQEACSALLQDFF 153 >gi|315659096|ref|ZP_07911961.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590] gi|315495820|gb|EFU84150.1| zinc-binding domain protein [Staphylococcus lugdunensis M23590] Length = 158 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ +R + + +IVKD VI R T+ HAE A+E Sbjct: 4 DEYYMKIAIAEARKAEAI--GEVPIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A E T YVTLEPC CA I+ I RVV DP SG + Sbjct: 62 ASEVLGSWRLEACTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCSGSLMN 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + I+ ++E E L ++ R Sbjct: 116 LLEQPQFNHQAIVKTGVLEQECGQLLRSFFQR 147 >gi|326390318|ref|ZP_08211877.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW 200] gi|325993595|gb|EGD52028.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter ethanolicus JW 200] Length = 148 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64 RFM AA+ ++ L V +IVKDG +IG+G HAE+ A++EA Sbjct: 4 RFMEAAILEAKKSYQL--GEVPVGAVIVKDGQIIGKGFNQKESSNDATTHAEILAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|307267454|ref|ZP_07548942.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii Rt8.B1] gi|306917535|gb|EFN47821.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter wiegelii Rt8.B1] Length = 148 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64 RFM AA+ ++ L V +IVKDG +IG+G HAE+ A++EA Sbjct: 4 RFMEAAILEAKKSYQL--GEVPVGAVIVKDGQIIGKGFNQKESSNDATAHAEILAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILESRIKRVYIGAESERTGAAGTVVDIL 115 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|294340450|emb|CAZ88831.1| tRNA-specific adenosine deaminase [Thiomonas sp. 3As] Length = 187 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 56/155 (36%), Gaps = 22/155 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEV 57 P D FM AL ++ L V +IVKDG VI G G HAE+ Sbjct: 7 PDLEADRAFMRLALDQAQNAWLL--GEVPVGAVIVKDGKVIATGYNRPIGDHDPTAHAEI 64 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ +A T YVTLEPC+ CA ++ RVV DP + Sbjct: 65 VAIRQAAHLLGNYRLPECTLYVTLEPCAM------CAMALLHARFARVVFGARDPKTGAA 118 Query: 113 GRGLQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 G + L+ I + + L + Sbjct: 119 GSVVDLFAEPRLNHHCDITPEIEQEACSALLQDFF 153 >gi|289551636|ref|YP_003472540.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis HKU09-01] gi|289181167|gb|ADC88412.1| tRNA-specific adenosine-34 deaminase [Staphylococcus lugdunensis HKU09-01] Length = 158 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 44/152 (28%), Positives = 60/152 (39%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ +R + + +IVKD VI R T+ HAE A+E Sbjct: 4 DEYYMKIAIAEARKAEAI--GEVPIGAVIVKDTQVIARAHNLRETSQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A E T YVTLEPC CA I+ I RVV DP SG + Sbjct: 62 ASEVLGSWRLEACTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCSGSLMN 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + I+ ++E E L ++ R Sbjct: 116 LLEQPQLNHQAIVKTGVLEQECGQLLRSFFQR 147 >gi|119486194|ref|ZP_01620254.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC 8106] gi|119456685|gb|EAW37814.1| bifunctional deaminase-reductase-like protein [Lyngbya sp. PCC 8106] Length = 252 Score = 97.7 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 77/234 (32%), Gaps = 27/234 (11%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 R H T+ +A+S D I + A +D +L G GT+ L Sbjct: 11 NRPHTTVILAMSADGKIADKNRSPARFGSPTDTTHLETQIADADGVLFGRGTLDTYGTTL 70 Query: 208 TC--------RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 + R + P++I+ K++ + + + ++ ++ ++ + V Sbjct: 71 SVSSEELLQRRQQQEKSPQPIQIVCSSSGKINPNLRFFQQSVPRWLLTTSQGSEQVKREN 130 Query: 260 FRKKNINIIYCDCR---------------DLKKLLTILVGRGVTSLLVEGGAAVAHSFIN 304 N+ D + D + G+ L V GG + S I Sbjct: 131 LHLTNLPDKSADFQQILIAKTLSENSNLIDWNDAFQQFMQMGLKRLAVLGGGQLVGSLIQ 190 Query: 305 SRLVDSIILYRSQIVIGEGGIPSPLEE----GYLEKNFMCVRRDYFGSDVCLEY 354 L+D L +++G P+P+E + + ++ + Y Sbjct: 191 MDLIDEFWLTVCPLILGGVDAPTPVEGKGFLADVSPRLQLLEVKQVEQEIFIHY 244 >gi|127512238|ref|YP_001093435.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4] gi|126637533|gb|ABO23176.1| CMP/dCMP deaminase, zinc-binding [Shewanella loihica PV-4] Length = 273 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 12/143 (8%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGE---E 66 +M A+ R G P V +IV G + G G HAE A+EEA E + Sbjct: 9 YMKQAVDQMRMSEGK---GPKVGAVIVTKGHQVIAG-HKKNGT-HAERAAIEEAQEKKID 63 Query: 67 ARGATAYVTLEPCSHYG-RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 RGAT Y TLEPC G + C+ I GI+ V + DP+ + G + L +GI Sbjct: 64 LRGATLYSTLEPCVSVGSKKEACSDLISRVGIKTVYIGRYDPNPNIQRLGWKKLRDEGIS 123 Query: 126 VDRM---MESEGKIFLHAYLTRQ 145 + +E ++ Sbjct: 124 LHDFDIEFRNEIDEINQTFMEHF 146 >gi|289577296|ref|YP_003475923.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter italicus Ab9] gi|289527009|gb|ADD01361.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter italicus Ab9] Length = 148 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 43/148 (29%), Positives = 64/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAG 64 +FM AA+ + L V +IVKD +IGRG HAE+ A++EA Sbjct: 4 KFMKAAILEANKSYQLREV--PVGAVIVKDDQIIGRGFNQKEATNDVTAHAEIMAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSIYVTLEPC------PMCAGAILEARIKRVYIGTESDKSGAAGTVINLL 115 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K+ L + Sbjct: 116 NNPDLGSKTEVYFGIMEDECKMLLENFF 143 >gi|145589597|ref|YP_001156194.1| CMP/dCMP deaminase, zinc-binding [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048003|gb|ABP34630.1| CMP/dCMP deaminase, zinc-binding protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 152 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 60/156 (38%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M + D +FM A+ ++ L P V ++V+DG VI + HAE Sbjct: 1 MSQAELDQQFMQQAIEQAKLAA-LAGEVP-VGAVVVRDGKVISSAFNKPISTHDPSAHAE 58 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL A + G T YVTLEPC C+ ++ + RVV DP Sbjct: 59 MLALRAAAQSEENYRLPGTTLYVTLEPC------VMCSGAMLHARLDRVVYGAADPKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G S K I + +M E L + Sbjct: 113 AGSVFDVFSSKQINHQTSVEGGVMGEECGQLLRNFF 148 >gi|90962204|ref|YP_536120.1| cytosine/adenosine deaminase [Lactobacillus salivarius UCC118] gi|301300462|ref|ZP_07206662.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821398|gb|ABE00037.1| Cytosine/adenosine deaminase [Lactobacillus salivarius UCC118] gi|300851959|gb|EFK79643.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lactobacillus salivarius ACS-116-V-Col5a] Length = 166 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 43/157 (27%), Positives = 64/157 (40%), Gaps = 23/157 (14%) Query: 1 MPVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55 MP++ +FM AL ++ + + C+IVKDG +IGRG + HA Sbjct: 1 MPLTDEQKVKFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHA 58 Query: 56 EVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 E+ A+EEA E +VTLEPC P C+ II I V DP Sbjct: 59 EMLAIEEANETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDPKAG 112 Query: 111 VSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 G + L + + ++E+E L + Sbjct: 113 TVGTLMNLLEDSRFNHQSFVEKGILENECASILKDFF 149 >gi|224101625|ref|XP_002312358.1| predicted protein [Populus trichocarpa] gi|222852178|gb|EEE89725.1| predicted protein [Populus trichocarpa] Length = 1364 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 64/176 (36%), Gaps = 17/176 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D FM AL ++ + P V ++V G +I RG HAE+ + E Sbjct: 1163 DEMFMREALLEAKKAA-DSWEVP-VGAVLVHHGRIIARGHNLVEELRDSTAHAEMICIRE 1220 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + R T Y+TLEPC P CA I++ I+ +V + + G ++ Sbjct: 1221 ASNKLRTWRLSETTLYITLEPC------PMCAGAILQARIKTLVWGAPNKLLGADGSWIR 1274 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVP 173 G + ++ +H + + +R + + A + Sbjct: 1275 LFPDAGEENGSELSNKPAAPVHPFHRKMTIRRGILESECADVMQQFFQLRRRKKEK 1330 >gi|160882011|ref|YP_001560979.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg] gi|160430677|gb|ABX44240.1| CMP/dCMP deaminase zinc-binding [Clostridium phytofermentans ISDg] Length = 161 Score = 97.3 bits (241), Expect = 3e-18, Method: Composition-based stats. Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 24/153 (15%) Query: 6 FDAR--FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQA 59 D + +M AA+ ++ + + C+IV D +I RG HAE+ A Sbjct: 1 MDEKIKYMKAAIVQAKKAALI--GEVPIGCVIVYDNKIIARGYNKRNTKKTTLAHAEILA 58 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 +E+A G T YVTLEPC C+ I++ + RVV+ +P +G Sbjct: 59 IEKASRYLNDWRLEGCTMYVTLEPCQM------CSGAIVQSRMDRVVIGSMNPKAGCAGS 112 Query: 115 GLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + + +M+ E L + Sbjct: 113 ILNLLQMEQFNHQVELETGVMQEECTKLLQDFF 145 >gi|186685266|ref|YP_001868462.1| deaminase-reductase domain-containing protein [Nostoc punctiforme PCC 73102] gi|186467718|gb|ACC83519.1| bifunctional deaminase-reductase domain protein [Nostoc punctiforme PCC 73102] Length = 226 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 86/219 (39%), Gaps = 14/219 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD------- 203 T+ +A++ D I + + + + + +D +LVG GT+ A+ Sbjct: 5 QTTVVLAMTADGKISAVDPKAPRDADPVDQAHLEYQASFADLVLVGAGTIRAEGGTYTIR 64 Query: 204 DP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 +P L R Q P+ ++ LSLD + + + + Sbjct: 65 NPELLAARKVRGQSPQPITCVVSGSLDLSLDLPFLSQDIERWIFTTRTGLKRNSDATSLQ 124 Query: 263 KNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVI 320 K +I DL + +++ RG+ ++V GG A+ + + + ++ L I+ Sbjct: 125 KLAELIDLGETDLDWDRAYSLMAERGIHKVIVLGGGALTAALLKAGRINDWWLTIWPIIY 184 Query: 321 GEGGIPSPLE-EGYLEK---NFMCVRRDYFGSDVCLEYI 355 G PSP+E EG+L + + V GS + L Y Sbjct: 185 GGKHAPSPVEGEGFLPQAAPHLQLVETRQVGSQLFLNYR 223 >gi|71280259|ref|YP_270337.1| cytidine/deoxycytidylate deaminase zinc-binding domain-containing protein [Colwellia psychrerythraea 34H] gi|71145999|gb|AAZ26472.1| cytidine/deoxycytidylate deaminase zinc-binding domain protein [Colwellia psychrerythraea 34H] Length = 182 Score = 97.3 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 56/151 (37%), Gaps = 22/151 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALE 61 D FM A ++ V ++V G +IG G HAE+ A+ Sbjct: 21 LDLTFMRRAFELAQQAEQ--HDEIPVGAVVVHQGKIIGEGFNQSIMLNDPSSHAEMNAIR 78 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +AGE T YVTLEPC P CA ++ I R+V D +G Sbjct: 79 QAGEFLNNYRLLDCTLYVTLEPC------PMCAGLLVHSRINRLVYACSDLKTGAAGSAF 132 Query: 117 QW-----LSQKGIIVDRMMESEGKIFLHAYL 142 L+ + + ++E E L A+ Sbjct: 133 NLVNNPQLNHQLEVCSNILEEECSQLLSAFF 163 >gi|330504655|ref|YP_004381524.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina NK-01] gi|328918941|gb|AEB59772.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina NK-01] Length = 158 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 66/152 (43%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 S D FM AL +R G V ++V+DG V+G+G + HAE+ A+ Sbjct: 10 SRDEHFMRLALAQARLGAGQ--GEVPVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMVAI 67 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A + + G+T YVTLEPCS CA I+ I RVV +P V+ Sbjct: 68 RAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVFAASEPRAGVAISQ 121 Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142 Q +L+ + ++ ++ E L + Sbjct: 122 GQFFDQGFLNHRVLVEGGLLAEESGALLKDFF 153 >gi|291520377|emb|CBK75598.1| Cytosine/adenosine deaminases [Butyrivibrio fibrisolvens 16/4] Length = 179 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEEA 63 ++M+ AL+ +R + + C+IV++ +I RG HAE+ A+++A Sbjct: 28 EKYMAQALKEARKAYDINEV--PIGCVIVQNDKIIARGYNRRNTDKSVLAHAEIAAIQKA 85 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ T YVTLEPC CA I++ I RVVV +P +G L Sbjct: 86 CKKTGDWRLEDCTLYVTLEPC------QMCAGAIVQARIPRVVVGAMNPKAGCAGSILNI 139 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142 L + ++ E K + ++ Sbjct: 140 LQMHQFNHVCDLETDVLGEECKEMMKSFF 168 >gi|237808810|ref|YP_002893250.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187] gi|237501071|gb|ACQ93664.1| CMP/dCMP deaminase zinc-binding [Tolumonas auensis DSM 9187] Length = 164 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 42/158 (26%), Positives = 61/158 (38%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 MP S D +M A++ +R + V ++V + VIG G + C HAE Sbjct: 1 MPQSEQDIHWMQYAMQLARRAE--EAGEVPVGAVLVLNNEVIGEGWNLSICRHDPCAHAE 58 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ +AG+ GAT YVTLEPC CA +I I R+V D Sbjct: 59 IMAIRQAGQNIGNYRLLGATLYVTLEPCIM------CAGAMIHSRIERLVYGASDLKTGA 112 Query: 112 SGRGLQWL---SQKGIIVD--RMMESEGKIFLHAYLTR 144 +G L I+ + L + R Sbjct: 113 AGSVFDVLTDPRHNHIVSVIGGIEAEACSQQLSNFFRR 150 >gi|295394785|ref|ZP_06805000.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] gi|294972381|gb|EFG48241.1| riboflavin biosynthesis protein RibD [Brevibacterium mcbrellneri ATCC 49030] Length = 258 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 11/195 (5%) Query: 155 KIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--------PE 206 + +S D + A S ++ ++R+ +DA++VG TV ++ Sbjct: 47 NMVISVDGAVAGADGLSRSVSTPADMRVFSVVRSLADAVVVGAQTVRSERLTRMSPKPAH 106 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 L R Q P+ +I+ L D I +PV + T DP + R+ Sbjct: 107 LNQRHARGQTDVPIMVIVTSSGDLPWDR--INERGTSPVWVATNTSDPQVLAELRRHADE 164 Query: 267 IIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP 326 ++ + + LV RG+ L+ EGG V ++++ L+D + L S + G G P Sbjct: 165 VL-TGIESPQAVKDALVARGLRRLVCEGGPNVLAQWMDAGLIDEMCLTVSPKLHGTPGAP 223 Query: 327 SPLEEGYLEKNFMCV 341 EG + V Sbjct: 224 RLFGEGIATARDVEV 238 >gi|314937113|ref|ZP_07844460.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus hominis subsp. hominis C80] gi|313655732|gb|EFS19477.1| cytidine/deoxycytidylate deaminase family protein [Staphylococcus hominis subsp. hominis C80] Length = 163 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ ++ L + +IVKD +I R T HAE A+E Sbjct: 4 DEFYMKCAIEEAKKARQL--GEVPIGAVIVKDNEIISRAHNLRETLQQPTAHAEHLAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC CA ++ I RVV DP SG + Sbjct: 62 AAKVIGSWRLEDCTLYVTLEPC------VMCAGTVVMSRIPRVVYGAMDPKGGCSGSLMD 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142 L + I+ ++E E L + Sbjct: 116 LLQQPQFNHRAIVEQGVLEEECSNLLRQFF 145 >gi|196251180|ref|ZP_03149855.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16] gi|196209306|gb|EDY04090.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. G11MC16] Length = 169 Score = 96.9 bits (240), Expect = 4e-18, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +M A+ ++ + + +IV+DG VI R T HAE+ Sbjct: 9 MMNNDEYYMRLAIEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEIL 66 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A++EA + AT YVTLEPC+ CA I+ I RVV DP +G Sbjct: 67 AIDEACQATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGASDPKGGCAG 120 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 + L + + ++ SE L + R Sbjct: 121 TLMNLLQESRFNHQADVTSGVLASECGSLLSDFFRR 156 >gi|15612596|ref|NP_240899.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125] gi|10172645|dbj|BAB03752.1| Cu binding protein (Mn oxidation) [Bacillus halodurans C-125] Length = 159 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 43/156 (27%), Positives = 66/156 (42%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58 + D +M AL + L + +IVKDG+V+ + HAE+ Sbjct: 1 MQKDDLYYMREALVQADEAERL--GEVPIGAVIVKDGVVVAKAYNLREINQQAIAHAELL 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+E+A + G T YVTLEPC P CA I++ I RVV DP +G Sbjct: 59 AIEKACKALGTWRLTGCTLYVTLEPC------PMCAGAIVQSRIERVVYGATDPKAGCAG 112 Query: 114 RGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144 + L + + I+ ++E E L A+ + Sbjct: 113 TLMNLLNEERFNHQTIVESGVLEEECSQRLTAFFRK 148 >gi|167038582|ref|YP_001666160.1| CMP/dCMP deaminase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038705|ref|YP_001661690.1| CMP/dCMP deaminase [Thermoanaerobacter sp. X514] gi|256751425|ref|ZP_05492303.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus CCSD1] gi|300913736|ref|ZP_07131053.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561] gi|307723248|ref|YP_003902999.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp. X513] gi|320116977|ref|YP_004187136.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852945|gb|ABY91354.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter sp. X514] gi|166857416|gb|ABY95824.1| CMP/dCMP deaminase, zinc-binding [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749644|gb|EEU62670.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter ethanolicus CCSD1] gi|300890421|gb|EFK85566.1| CMP/dCMP deaminase zinc-binding [Thermoanaerobacter sp. X561] gi|307580309|gb|ADN53708.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter sp. X513] gi|319930068|gb|ADV80753.1| CMP/dCMP deaminase zinc-binding protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 148 Score = 96.9 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 65/148 (43%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64 +FM AAL ++ L V +IVK+G +IGRG HAE+ A++EA Sbjct: 4 KFMEAALLEAKKSYQL--GEVPVGAVIVKEGQIIGRGFNQKESTNDATAHAEIIAIKEAC 61 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 + + YVTLEPC P CA I+E I+RV + + +G + L Sbjct: 62 KTLGSWRLDDCSMYVTLEPC------PMCAGAILEARIKRVYIGAESDKSGAAGTVVDIL 115 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + K + +ME E K L + Sbjct: 116 NNSYLGSKTEVYFGIMEEECKTLLKDFF 143 >gi|94501251|ref|ZP_01307773.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp. RED65] gi|94426678|gb|EAT11664.1| cytidine/deoxycytidylate deaminase family protein [Oceanobacter sp. RED65] Length = 164 Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 41/158 (25%), Positives = 62/158 (39%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M D FM+ A++ ++ L V ++V DG VIG G HAE Sbjct: 1 MSQELQDEHFMALAIQQAKKADALNEV--PVGAVVVLDGEVIGEGYNQPISGCDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 V AL +A + A YVT+EPC CA I+ IRR+V +P V Sbjct: 59 VMALRQAAKNVSNYRLVNADLYVTIEPC------TMCAGAIVHSRIRRLVYGATEPKAGV 112 Query: 112 SGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTR 144 L + + +V ++ + + A+ R Sbjct: 113 IESQQTILTQSYFNHRVEVVSGILLDQCTDIVQAFFRR 150 >gi|302783817|ref|XP_002973681.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii] gi|300158719|gb|EFJ25341.1| hypothetical protein SELMODRAFT_413953 [Selaginella moellendorffii] Length = 311 Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 5/138 (3%) Query: 224 LDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILV 283 + L L+ + + +++ + + ++ D K ++ Sbjct: 1 MSRTLNLPLELHLWDVSNAHTIVMTQRGARREFQRELVTRGVEVVEFDFLTPKAVMDYCY 60 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 RG +L E G A++ + + ++ +I + + +IG P+P+ E + + Sbjct: 61 ERGFLMVLWECGGALSAPALAAGIIHKVIAFVAPKIIG-VTAPTPVGELGMVDMTQALNL 119 Query: 344 DYFGSDVCLEYIGKNLCL 361 DV E + + Sbjct: 120 L----DVTFEQLIPRMKS 133 >gi|242095760|ref|XP_002438370.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor] gi|241916593|gb|EER89737.1| hypothetical protein SORBIDRAFT_10g014230 [Sorghum bicolor] Length = 1607 Score = 96.5 bits (239), Expect = 5e-18, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 17/188 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEE 62 D FM AL ++ + P V ++V++G +I RG HAE+ + E Sbjct: 1409 DELFMREALLEAQRAADI-WEVP-VGAVLVQNGEIIARGCNLVEDLRDSTAHAEIVCIRE 1466 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + + T YVTLEPC+ CA I++ I VV + + G ++ Sbjct: 1467 ASNKLKTWRLADTTLYVTLEPCAM------CAGAILQARIDTVVWGAPNKLLGADGSWVR 1520 Query: 118 WLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGF 177 G ++ K + L S+ P + Sbjct: 1521 LFPGDGQTNTLDSTNQSKAAGPVHPFHPKITIRRGVLSTECSEIMQQFFQLRRKKPQSPP 1580 Query: 178 ISKNQVHL 185 + H Sbjct: 1581 QAHRHGHH 1588 >gi|242372784|ref|ZP_04818358.1| deaminase [Staphylococcus epidermidis M23864:W1] gi|242349557|gb|EES41158.1| deaminase [Staphylococcus epidermidis M23864:W1] Length = 168 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 22/158 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A++ +R L + +IVKD VI R T HAE A+E Sbjct: 4 DNDYMRLAIKEARKAQEL--GEVPIGAVIVKDNHVIARAHNLRETLQQPTAHAEHIAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A E T YVTLEPC CA I+ I RVV DP +G + Sbjct: 62 ASEVIGSWRLEDCTLYVTLEPC------VMCAGAIVMSRIPRVVYGAIDPKGGCTGSLMN 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 L+ + I+ ++E+E L + +++ Sbjct: 116 LLAQPQFNHRAIVESGILENECSTLLREFFKNIRQQKR 153 >gi|261208197|ref|ZP_05922870.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6] gi|289566587|ref|ZP_06447008.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF] gi|294615830|ref|ZP_06695673.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636] gi|260077454|gb|EEW65172.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium TC 6] gi|289161632|gb|EFD09511.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium D344SRF] gi|291591320|gb|EFF22986.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1636] Length = 171 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 26/160 (16%) Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M ++ D ++M AL ++ L + ++V DG V+GRG T Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58 Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A++EA E+ AT +VTLEPC P C+ +I + V DP Sbjct: 59 THAEMLAIKEACEKVGSWRLEDATLFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112 Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 +G + L + + ++E E + L + Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152 >gi|258510122|ref|YP_003183556.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476848|gb|ACV57167.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 161 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 53/129 (41%), Gaps = 17/129 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D RFM AL + V ++V++G ++G G T G HAE Sbjct: 1 MMEQAADERFMRRALELAEEAA--RWGEVPVGAVVVENGRIVGEGFNRRETWRDGTAHAE 58 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+EEA G YVTLEPC P CA I+ ++RVV D Sbjct: 59 MLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRVVYGATDAKGGA 112 Query: 112 SGRGLQWLS 120 ++ L Sbjct: 113 VASKVRLLE 121 >gi|192359003|ref|YP_001981836.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain-containing protein [Cellvibrio japonicus Ueda107] gi|190685168|gb|ACE82846.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Cellvibrio japonicus Ueda107] Length = 201 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 63/162 (38%), Gaps = 22/162 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 D+ +M A+ + G V +IV++GI IG G T+ HAE+ AL Sbjct: 9 DDSYWMRRAIALA--SQGEALGEVPVGAVIVREGIAIGEGFNQPITSRDPSAHAEIVALR 66 Query: 62 EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GAT YVTLEPC C ++ I R+V +P Sbjct: 67 QAAAHLQNYRLPGATLYVTLEPC------TMCVGALVHARITRLVYGTAEPKAGAVTSRA 120 Query: 117 QWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 + L + + +M +E + L + ++ + Sbjct: 121 RLLDADYVNHRVSYEGGLMAAECQHQLSHFFQQRRLQHKQAR 162 >gi|138893694|ref|YP_001124147.1| cytosine deaminase [Geobacillus thermodenitrificans NG80-2] gi|134265207|gb|ABO65402.1| Cytosine deaminase [Geobacillus thermodenitrificans NG80-2] Length = 161 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +M A+ ++ + + +IV+DG VI R T HAE+ Sbjct: 1 MMNNDEYYMRLAIEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEIL 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ EA + AT YVTLEPC+ CA I+ I RVV DP +G Sbjct: 59 AIAEACQATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGASDPKGGCAG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 + L + + ++ SE L + R Sbjct: 113 TLMNLLQESRFNHQADVTSGVLASECGSLLSDFFRR 148 >gi|296123852|ref|YP_003631630.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus DSM 3776] gi|296016192|gb|ADG69431.1| CMP/dCMP deaminase zinc-binding protein [Planctomyces limnophilus DSM 3776] Length = 166 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEAG 64 R+M AL ++ + +IVKD +IG HAE+ A+ +A Sbjct: 18 RWMRQALDLAQQA--FAEEEVPIGAVIVKDDQIIGAAWNQREQLKDPTAHAEIVAITQAA 75 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW- 118 E T YVTLEPC P CA I++ I RVV + DP Q Sbjct: 76 EVIGDWRLEDCTLYVTLEPC------PMCAGAIVQARIPRVVYGITDPKAGACHTLYQIT 129 Query: 119 ----LSQKGIIVDRMMESEGKIFLHAYL 142 L+ + ++ ++ E K L + Sbjct: 130 DDARLNHRCAVLGGVLAQECKEILQEFF 157 >gi|310639569|ref|YP_003944327.1| cmp/dcmp deaminase zinc-binding protein [Paenibacillus polymyxa SC2] gi|309244519|gb|ADO54086.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus polymyxa SC2] Length = 165 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 23/155 (14%) Query: 3 VSSFD-ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEV 57 ++ D A +M A++ + L + +IVKD +IGRG T HAE+ Sbjct: 1 MTIMDHAYWMREAIQEAYKAEAL--GEVPIGAVIVKDNEIIGRGYNLRETDTDPTAHAEM 58 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ +A E YVTLEPC P CA I++ + ++ DP + Sbjct: 59 VAIRQASEHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPHLIYGTTDPKAGCA 112 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 G + L + +++ E L + Sbjct: 113 GTLMNLLQEPRFNHCTEVTSGVLQEECASMLTNFF 147 >gi|158335091|ref|YP_001516263.1| riboflavin biosynthesis protein RibD domain-containing protein [Acaryochloris marina MBIC11017] gi|158305332|gb|ABW26949.1| riboflavin biosynthesis protein RibD C-terminus domain protein [Acaryochloris marina MBIC11017] Length = 230 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 83/225 (36%), Gaps = 19/225 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202 +R T+ +A+S D I A + A +D IL G T+ A Sbjct: 7 QRPTTTVVLAMSADGKIADAQHSPPEFGSDEDYAHLERQVAAADGILFGSATLKAGETAM 66 Query: 203 -----DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLA 257 D + RL Q P +I+ L + K + A+ ++ T+ Sbjct: 67 RVVTQD--LINARLERGQPEQPAQIVCTRSGDLDPNLKFFQQAVPH-WLVTTQAGGQSWQ 123 Query: 258 LAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 + I + + D + L + G+ + V GG + + + L+D + L Sbjct: 124 GTSHFEQIFTYGTEAQSIDWGQTLASMPALGIHKIAVLGGGQIVAALLAEDLIDELHLTV 183 Query: 316 SQIVIGEGGIPSPL-EEGYLEKN---FMCVRRDYFGSDVCLEYIG 356 ++IG P+P+ +G+L+++ + +++ L Y Sbjct: 184 CPLLIGGASTPTPVAGQGWLQQDAPGLELLSVKQVENELFLHYRR 228 >gi|160936895|ref|ZP_02084259.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC BAA-613] gi|158440085|gb|EDP17832.1| hypothetical protein CLOBOL_01784 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 96.5 bits (239), Expect = 6e-18, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62 D FM ALR ++ + + C+IV+ +I RG HAE+ ++++ Sbjct: 95 DEGFMREALRQAQKAAAIGDV--PIGCVIVRGDKIIARGYNRRNADKSVLSHAEIISIKK 152 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC P CA I++ I R+ V +P +G L Sbjct: 153 ACKKIGDWRLEDCTMYVTLEPC------PMCAGAIVQARIPRIAVGCMNPKAGCAGSVLD 206 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLT 143 L G + + ++E E + + Sbjct: 207 MLHVPGFNHQAEVTEGVLEQECSKLMSDFFQ 237 >gi|307132102|ref|YP_003884118.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937] gi|306529631|gb|ADM99561.1| tRNA-specific adenosine-34 deaminase [Dickeya dadantii 3937] Length = 167 Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 39/175 (22%), Positives = 65/175 (37%), Gaps = 22/175 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M D +M AL ++ + V ++V+ +IG G HAE Sbjct: 1 MSSQMDDEFWMRHALTLAQRAW--DAGEVPVGAVLVRGDKIIGEGWNRPISRNDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL++ G+ + T Y+TLEPC CA +I I R+V D Sbjct: 59 IMALQQGGQALQNYRLLDTTLYITLEPC------VMCAGAMIHSRINRLVYGAADAKTGA 112 Query: 112 SGRGLQWLSQKG-----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 +G + L G +I D ++ E L + + +++ S D Sbjct: 113 AGSLVDILRHPGMNHHIVITDGVLADECSELLSRFFRMRRQQQRDARSAERDSSD 167 >gi|317126762|ref|YP_004093044.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus DSM 2522] gi|315471710|gb|ADU28313.1| CMP/dCMP deaminase zinc-binding protein [Bacillus cellulosilyticus DSM 2522] Length = 161 Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 22/158 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 + S D FM AL + + + + +IV+D ++I RG HAE Sbjct: 3 LKQSKEDIFFMEQALVEAEKAMEI--GEVPIGAIIVRDNVIIARGHNLREQQQMVTNHAE 60 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++A E T YVTLEPC P CA I++ ++RVV DP Sbjct: 61 LIAIQKACEEVGSWRLEDCTLYVTLEPC------PMCAGAIVQSRMKRVVYGAADPKAGC 114 Query: 112 SGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144 G + L+ + + + E E L + + Sbjct: 115 CGSLMNLLDEPRLNHQVYVTSGLYEEESSRLLKDFFKK 152 >gi|291302009|ref|YP_003513287.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis DSM 44728] gi|290571229|gb|ADD44194.1| CMP/dCMP deaminase zinc-binding protein [Stackebrandtia nassauensis DSM 44728] Length = 419 Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT-AYGGCPHAEVQALEEAGE 65 D ++ A+ + + T SV +IV DG V+ G + HAE AL + + Sbjct: 3 DEHWLRQAIALAAK-CPPSDTAFSVGAVIVADGRVLATGYSRETDPHDHAEEAALSKLDQ 61 Query: 66 EARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 + GAT Y +LEPC P CA+ II + RVV +PD V +GL+ L++ + Sbjct: 62 DLSGATVYSSLEPCGQRASRPVSCAELIIAARVPRVVYAWREPDTFVQPKGLRLLAEARV 121 Query: 125 IVDRM 129 + ++ Sbjct: 122 ELVQL 126 >gi|317499420|ref|ZP_07957687.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lachnospiraceae bacterium 5_1_63FAA] gi|316893292|gb|EFV15507.1| cytidine and deoxycytidylate deaminase zinc-binding region [Lachnospiraceae bacterium 5_1_63FAA] Length = 161 Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60 + + ++M A++ ++ + + C+IV+D +I R HAE+ A+ Sbjct: 2 TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ T Y+TLEPC CA I++ I +VV+ +P +G Sbjct: 60 QKASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSV 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + I ++E E L + Sbjct: 114 LNILQIDKFNHQVEIERGILEEECSQMLSDFF 145 >gi|213026041|ref|ZP_03340488.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 59 Score = 96.1 bits (238), Expect = 7e-18, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 32/56 (57%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 M+ AL+ ++ T NP+V C+IV +G ++G G G PHAEV AL G + Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMGGRQ 56 >gi|325921804|ref|ZP_08183621.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865] gi|325547681|gb|EGD18718.1| tRNA-adenosine deaminase [Xanthomonas gardneri ATCC 19865] Length = 165 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 26/169 (15%) Query: 1 MPV----SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVT----AYGG 51 MP+ S D ++M AL+ + P V L+V DG V+G G ++ Sbjct: 1 MPLDAAQSPIDQQWMQRALQLAERAERDYDEIP-VGALLVDADGNVLGEGWNFNIASHDP 59 Query: 52 CPHAEVQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 HAE+ A+ EAG G T YVTLEPC+ CA +I I RVV D Sbjct: 60 TAHAEIMAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASD 113 Query: 107 PDVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 P G L+ + + ++ +E + L Y + K Sbjct: 114 PKTGACGSVFDLLADPRHNHRVQVSGGVLAAEASLRLTNYFRAKRGKPP 162 >gi|167766023|ref|ZP_02438076.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1] gi|167712103|gb|EDS22682.1| hypothetical protein CLOSS21_00515 [Clostridium sp. SS2/1] Length = 161 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQAL 60 + + ++M A++ ++ + + C+IV+D +I R HAE+ A+ Sbjct: 2 TQEEKYMKEAIKQAKKAA--VIGDVPIGCVIVEDDKIIARAYNQRNKKKTTLAHAELLAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 ++A ++ T Y+TLEPC CA I++ I +VV+ +P +G Sbjct: 60 QKASKKVNDWRLEDCTMYITLEPCQM------CAGAIVQARIPKVVIGAMNPKAGCAGSV 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 L L + I ++E E L + Sbjct: 114 LNILQIDKFNHQVEIERGILEEECSQMLSDFF 145 >gi|297582358|ref|YP_003698138.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens MLS10] gi|297140815|gb|ADH97572.1| CMP/dCMP deaminase zinc-binding protein [Bacillus selenitireducens MLS10] Length = 174 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 46/158 (29%), Positives = 64/158 (40%), Gaps = 24/158 (15%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPH 54 M S D +M AL + + + +IVKD I+I RG T H Sbjct: 1 MKTSQQLKDEAYMKEALTEADKAEAI--GEVPIGAVIVKDDIIIARGYNERETKQRATGH 58 Query: 55 AEVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ A+EEA G T YVTLEPC P CA I++ I RVV DDP Sbjct: 59 AELVAIEEACRILKTWRLEGCTLYVTLEPC------PMCAGAIVQSRIDRVVYGADDPKG 112 Query: 110 RVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 G + L + ++ ++ E L ++ Sbjct: 113 GSCGTVVNLLDEPKFNHAPLVTSGTLKEEAADRLSSFF 150 >gi|229491248|ref|ZP_04385074.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus erythropolis SK121] gi|229321787|gb|EEN87582.1| riboflavin biosynthesis protein RibD domain protein [Rhodococcus erythropolis SK121] Length = 249 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 83/231 (35%), Gaps = 18/231 (7%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y + + + + S D + + S + K+ +LR D ++VG GT Sbjct: 19 YAYPENLSQPWMRVNFVSSIDGCVAV-DGVSGGLGTPADKSVFGILRELCDVVVVGAGTA 77 Query: 201 LAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 A+ D R P +++ H + +S++++ + P+++V + Sbjct: 78 RAENYGGVQVSDEARARRTADGLAPVPPILVVSAHASIDSESRLLRDTEVPPILVVGRDA 137 Query: 253 DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 D A R + D ++ + L R + +L EGG ++ I VD Sbjct: 138 DSAAISALRSAGAQVEVTDSPNVTSGDIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDE 197 Query: 311 IILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD----VCLEYIGK 357 + + S ++G L + +R + D + ++ + Sbjct: 198 LCITTSPQLVGSKVGRISLSPNAMP---TAMRPAHILGDTDGTILTRWVRQ 245 >gi|284052809|ref|ZP_06383019.1| riboflavin-specific deaminase [Arthrospira platensis str. Paraca] gi|291566856|dbj|BAI89128.1| putative riboflavin-specific deaminase [Arthrospira platensis NIES-39] Length = 234 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 77/227 (33%), Gaps = 18/227 (7%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA----- 202 R H T+ +A+S D I + AQ+DA+L G GT+ A Sbjct: 8 TRPHTTVILAMSADGKIADLMRSPARFGSNADIIHLERQIAQADAVLFGNGTLAAYGTVL 67 Query: 203 ---DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALA 259 L R + P++I+ K++ K + + P ++T Sbjct: 68 RVSSTELLGDREKNGKPPQPVQIVCSASGKINPTLKFFQQPV--PKWLLTTFLGGQPWKR 125 Query: 260 FRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315 F +I D + + L L R + L V GG + S + +D L Sbjct: 126 FSDHFDQVIVADDSNGVITWSEALQQLRDRDIQRLAVLGGGQLVASLMAHHAIDEFHLTV 185 Query: 316 SQIVIGEGGIPSPLEEGYLEKNF----MCVRRDYFGSDVCLEYIGKN 358 ++G P+P++ F + +V L Y K+ Sbjct: 186 CPRILGGTTSPTPVDGEGFLSRFAPHLQLLSVQQVDDEVFLHYRVKS 232 >gi|315644422|ref|ZP_07897555.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] gi|315280172|gb|EFU43465.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus vortex V453] Length = 163 Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 +M A+ +R L + +IV+ +IGRG T Y G HAE+ A+ EA Sbjct: 17 EHWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + YVTLEPC P CA I++ + +++ DP +G + Sbjct: 75 SQHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++D +++ E L + R Sbjct: 129 LQEPRFNHRTTVIDGVLQEECASLLTQFFRR 159 >gi|20428822|emb|CAD21697.1| hypothetical protein [Azoarcus evansii] Length = 154 Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AL +R G P V ++V DG ++GRG G HAEV AL + Sbjct: 3 DEDYMRVALEQAREA-GSCDEVP-VGAVVVLDGEIVGRGFNQPIGRHDPTAHAEVMALRD 60 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G YVTLEPC+ C+ I+ I RVV DP V+G + Sbjct: 61 AAARLGNYRLPGCELYVTLEPCAM------CSGAIMHSRIARVVFGARDPKTGVAGSVID 114 Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142 L+ I ++ E L ++ Sbjct: 115 LFAESRLNHHATISGGVLAEECGGLLSSFF 144 >gi|218438554|ref|YP_002376883.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 7424] gi|218171282|gb|ACK70015.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 7424] Length = 227 Score = 95.7 bits (237), Expect = 9e-18, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 14/213 (6%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLAD--- 203 KR H L +A++ D I + K + + D +L G GT+ A Sbjct: 1 MKRPHTILILAMTADGKIADRSRSAARFGSAADKIHLEKQISLVDGVLFGAGTLRAYQTS 60 Query: 204 ----DP-ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 +P L R + P+ ++ L + + ++ T V Sbjct: 61 LLICNPDFLQWRHQQNKPPQPVHLVCSASGNLDPNWRFF-EQSFPRWLVTTSTGAKVWQS 119 Query: 259 AFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILY 314 + I+ D D + L+ + +L + GG + S + +L+D L Sbjct: 120 KNFQGFDRILRGDEEDNSINWCTVFEQLISLNIQTLAILGGGELVASLLEDQLIDEFYLT 179 Query: 315 RSQIVIGEGGIPSPLEE-GYLEKNFMCVRRDYF 346 +++G P+P+E G+L + + F Sbjct: 180 LCPLILGGKDAPTPVEGLGFLSQQAQELELLSF 212 >gi|226306344|ref|YP_002766304.1| hypothetical protein RER_28570 [Rhodococcus erythropolis PR4] gi|226185461|dbj|BAH33565.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 249 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 73/193 (37%), Gaps = 11/193 (5%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y + + + + S D + + S + K+ +LR D ++VG GT Sbjct: 19 YAYPENLSQPWMRVNFVSSIDGCVSV-DGVSHGLGTPADKSVFGILRELCDVVVVGAGTA 77 Query: 201 LAD--------DPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND 252 A+ D R G P +++ H + +S++++ + P+++V Sbjct: 78 RAENYGGVQISDAARARRKAGGLAPVPQILVVSAHASIDPESRLLRDTEIPPILVVGSAA 137 Query: 253 DPVLALAFRKKNINIIYCDCRDLK--KLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDS 310 D A R + D ++ + L R + +L EGG ++ I VD Sbjct: 138 DSAAISALRSAGAQVEVTDSPNVSSGDIDRALSARKLRRVLCEGGPSLFGQLIEDNAVDE 197 Query: 311 IILYRSQIVIGEG 323 + + S ++G Sbjct: 198 LCITTSPQLVGSK 210 >gi|149908700|ref|ZP_01897361.1| putative zinc-binding protein [Moritella sp. PE36] gi|149808242|gb|EDM68181.1| putative zinc-binding protein [Moritella sp. PE36] Length = 182 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 59/152 (38%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D R+M A+ + + V +IV + +IG G + HAE+ AL E Sbjct: 25 DERWMQHAIMLAGKAEAIDEV--PVGAVIVLNDKIIGEGWNQSIISHDATAHAEIMALRE 82 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AG+ AT YVTLEPCS CA ++ ++R+V D +G Sbjct: 83 AGKTVENYRLIDATLYVTLEPCSM------CAGAMVHSRVKRLVYGAVDLKTGAAGSVFN 136 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 + + + + SE L + R Sbjct: 137 LVEHAQLNHQIEVRSGVFASETGALLSQFFKR 168 >gi|91225086|ref|ZP_01260308.1| YfhC protein [Vibrio alginolyticus 12G01] gi|91190029|gb|EAS76300.1| YfhC protein [Vibrio alginolyticus 12G01] Length = 169 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 22/148 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEAGEE 66 M A+ + V ++VKDG +I G G HAE+Q L +AG++ Sbjct: 1 MRRAMELAEQAE--AEGEVPVGAVLVKDGEIIAEGRNRSIGTHDATAHAEIQTLRKAGQK 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 59 LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144 ++ ++E E + L A+ R Sbjct: 113 QAAYHYALVEKGLLEDECRTQLQAFFKR 140 >gi|255546921|ref|XP_002514518.1| conserved hypothetical protein [Ricinus communis] gi|223546122|gb|EEF47624.1| conserved hypothetical protein [Ricinus communis] Length = 1624 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 39/179 (21%), Positives = 62/179 (34%), Gaps = 17/179 (9%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61 D FM AL ++ T P V ++V+ G +I RG HAE+ + Sbjct: 1099 IDEMFMREALLEAKKAA-DTWEVP-VGAVLVQHGKIIARGYNLVEELRDSTAHAEMICIR 1156 Query: 62 EAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 EA + R T YVTLEPC P CA I++ I VV + + G + Sbjct: 1157 EASNQLRSWRLAETTLYVTLEPC------PMCAGAILQARIDTVVWGAPNKLLGADGSWI 1210 Query: 117 QWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPIT 175 + G + + +H + +R + + A + Sbjct: 1211 RLFPNGGGGSGSELVDKPPAPVHPFHPNMKIRRGILAPECADVMQQFFQLRRRKKAKSG 1269 >gi|28897437|ref|NP_797042.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633] gi|28805649|dbj|BAC58926.1| YfhC protein [Vibrio parahaemolyticus RIMD 2210633] Length = 161 Score = 95.7 bits (237), Expect = 1e-17, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 55/148 (37%), Gaps = 22/148 (14%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGEE 66 M AL + V ++VKDG VI G + HAE+Q L AG Sbjct: 1 MRRALALAEQAEL--EGEVPVGAVLVKDGEVIAEGWNRSICSHDATAHAEIQTLRNAGAV 58 Query: 67 AR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS- 120 T YVTLEPC P CA ++ ++RVV D +G L Sbjct: 59 LENYRLLDTTLYVTLEPC------PMCAGALLHSRVKRVVFGAPDLKAGAAGTVLNLFES 112 Query: 121 ----QKGIIVDRMMESEGKIFLHAYLTR 144 + ++E E + L A+ R Sbjct: 113 QAAYHYATVEKGLLEDECREQLQAFFKR 140 >gi|330936949|gb|EGH41059.1| cytidine/deoxycytidylate deaminase, zinc-binding region [Pseudomonas syringae pv. pisi str. 1704B] Length = 169 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 17/127 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 S D FM AL + L V ++V++G +IGRG HAE+ A+ Sbjct: 10 SNDQYFMREALALASQGALL--GEVPVGAVVVQNGEIIGRGYNCPISGSDPSAHAEMVAI 67 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A + G+T YVTLEPCS CA I+ + RVV +P + Sbjct: 68 RDAAKALDNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 121 Query: 116 LQWLSQK 122 Q+ SQ Sbjct: 122 GQFFSQA 128 >gi|167464544|ref|ZP_02329633.1| possible nucleoside deaminase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 152 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63 ++M A+ + T + +IV +G +IGRG HAE+ A+ EA Sbjct: 5 EQWMQEAISEALKAE--TIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREA 62 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E R T YVTLEPC P CA I++ I RVV DP +G + Sbjct: 63 SEYLRAWRLLNCTLYVTLEPC------PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNL 116 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + +++ ++ E L ++ + Sbjct: 117 LQEDRFNHRVEVINGILREECSSLLTSFFRK 147 >gi|291545680|emb|CBL18788.1| Pyrimidine reductase, riboflavin biosynthesis [Ruminococcus sp. SR1/5] Length = 116 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 14/114 (12%) Query: 264 NINIIYC----DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + IYC D DLKKL+T L RG+ S+L+EGG + S + + +V + + + + Sbjct: 2 GVETIYCPDEKDQIDLKKLMTDLGNRGIDSILLEGGGTLNDSALRAGIVKEVQAFVAPKL 61 Query: 320 IGEGGIPSPLEEGYLEKNFMCVRRDY-----FGSDVCL-----EYIGKNLCLQE 363 G +P+E +E V Y G D+ + E + CLQE Sbjct: 62 FGGVAGKTPVEGIGVEFPSEAVELKYTDICQIGEDIRIRCQVCEKKQEESCLQE 115 >gi|259048082|ref|ZP_05738483.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC 49175] gi|259035143|gb|EEW36398.1| tRNA-specific adenosine deaminase [Granulicatella adiacens ATCC 49175] Length = 168 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM AL+ ++ + ++V +G +IGRG HAE++A+ +A Sbjct: 7 EFFMREALKEAQKA--YDQEEVPIGAVVVLNGEIIGRGHNLREKEQDATLHAEIKAIRQA 64 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + +VTLEPC P C+ +I +++VV DP +G + Sbjct: 65 NQHLGSWRLEDCELFVTLEPC------PMCSGAMILARMKKVVFGAFDPKAGTAGTFMNL 118 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142 L + + ++E E K L + Sbjct: 119 LQDSRFNHQVEVEQGILEDECKEILQQFF 147 >gi|218289065|ref|ZP_03493302.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] gi|218240890|gb|EED08068.1| CMP/dCMP deaminase zinc-binding [Alicyclobacillus acidocaldarius LAA1] Length = 156 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 17/129 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M + D RFM AL + V ++V++G ++G G T G HAE Sbjct: 1 MMEQAADERFMRRALELAEEAA--RWGEVPVGAVVVENGRIVGEGFNRRETWRDGTAHAE 58 Query: 57 VQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+EEA G YVTLEPC P CA I+ ++R+V D Sbjct: 59 MLAIEEASRRLGGWRLTNCVLYVTLEPC------PMCAGAIVLSRVQRLVYGATDAKGGA 112 Query: 112 SGRGLQWLS 120 ++ L Sbjct: 113 VASKVRLLE 121 >gi|312884996|ref|ZP_07744685.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC BAA-2122] gi|309367328|gb|EFP94891.1| tRNA-specific adenosine deaminase [Vibrio caribbenthicus ATCC BAA-2122] Length = 156 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 22/162 (13%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEEAGE- 65 M A+ + V L+VKDG +I G + HAE++ L +AG+ Sbjct: 1 MRRAIELAHKAEQ--EGEVPVGALLVKDGEIIAEGWNRSISTHDATAHAEIEVLRKAGKI 58 Query: 66 ----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQ 121 T YVTLEPC P CA ++ ++R+V D +G L Sbjct: 59 LENYRLNDTTLYVTLEPC------PMCAGALLHSRVKRIVFGAFDKKTGAAGSVLNLFEH 112 Query: 122 KGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAV 158 + I ++E + + L ++ R+ E++ + Sbjct: 113 QAAYHYADIEKGVLEHQCRTQLQSFFKRRREEQREKKSQSKN 154 >gi|239825602|ref|YP_002948226.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70] gi|239805895|gb|ACS22960.1| CMP/dCMP deaminase zinc-binding [Geobacillus sp. WCH70] Length = 160 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ ++ + + +IV+DG +I R T HAE+ A+++ Sbjct: 4 DEYYMRLAIEEAKKAEQI--GEVPIGAIIVQDGHIIARAHNLRETEQRAIAHAEILAIDK 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + AT YVTLEPC+ CA I+ I+RVV DP +G + Sbjct: 62 ACKEVGSWRLEDATLYVTLEPCAM------CAGAIVLARIKRVVFGASDPKGGCAGTLMN 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + + ++ E L ++ + Sbjct: 116 LLQEGRFNHQAEVTSGILGEECGQMLSSFFRK 147 >gi|134094605|ref|YP_001099680.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans] gi|133738508|emb|CAL61553.1| tRNA-specific adenosine deaminase [Herminiimonas arsenicoxydans] Length = 170 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60 + D +M AL + L V ++VKDG VI G G HAE+ AL Sbjct: 9 TQDEIWMRQALDQAHNAWAL--GEVPVGAVVVKDGQVIATGFNQPIGTHDPTAHAEIMAL 66 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A G YVTLEPC C+ ++ + RVV DP G Sbjct: 67 RAAATILGNYRLPGCELYVTLEPC------VMCSGAMMHARLARVVFGASDPKTGACGSI 120 Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 + L+ + +M E L + Sbjct: 121 VNLFEQNQLNHHTQLTGGLMAQECGALLKDFF 152 >gi|239623044|ref|ZP_04666075.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522411|gb|EEQ62277.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 202 Score = 95.3 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 61/152 (40%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCP----HAEVQALEE 62 D FM A+R + L + C+IV+ G +I RG HAE+ +++ Sbjct: 54 DEGFMGEAIRQAHKAAALGDV--PIGCVIVRQGQIIARGYNRRNADKSVLSHAEIISIKR 111 Query: 63 AGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++ T YVTLEPC P C+ I++ I RVV+ + +G L Sbjct: 112 ACKKLGDWRLEDCTMYVTLEPC------PMCSGAIVQARIPRVVIGCMNAKAGCAGSVLD 165 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L + G ++ E + + + Sbjct: 166 LLHEPGFNHQVDTRAGVLGEECSGMMKEFFRK 197 >gi|307153713|ref|YP_003889097.1| bifunctional deaminase-reductase domain-containing protein [Cyanothece sp. PCC 7822] gi|306983941|gb|ADN15822.1| bifunctional deaminase-reductase domain protein [Cyanothece sp. PCC 7822] Length = 227 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 21/227 (9%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA---- 202 KR H + +A++ D I + KN + AQ DA+L G GT+ A Sbjct: 1 MKRPHTLVVLAMTADGKIADKHSSAARFGSDADKNHLETQIAQVDAVLFGAGTLRAYHTS 60 Query: 203 ---DDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 +PEL R + P+ I+ L+ + + + +L P ++T + Sbjct: 61 FPISNPELLQWRKQQHKPPQPVHIVCSASGNLNPEMRFFRQSL--PRWLLTTHRGENTWQ 118 Query: 259 AFRKKNINIIYCDCRDLKKLLTILVG-RGVTSLLVE-----GGAAVAHSFINSRLVDSII 312 + I DL + L T+L +E GG + S + + L+D Sbjct: 119 QTNSEGFERI-LKADDLDNRINWLKAFEQFTTLGLEKLAILGGGGLVASLLEAALIDEFY 177 Query: 313 LYRSQIVIGEGGIPSPLEEGYLEKN----FMCVRRDYFGSDVCLEYI 355 L +++G P+P+E + + ++ L Y Sbjct: 178 LTLCPLLLGGTDAPTPVEGLGFSQQQAQELELLSVKQIEGEIFLHYR 224 >gi|322383121|ref|ZP_08056948.1| tRNA specific adenosine deaminase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152783|gb|EFX45409.1| tRNA specific adenosine deaminase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 157 Score = 95.0 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63 ++M A+ + T + +IV +G +IGRG HAE+ A+ EA Sbjct: 10 EQWMQEAISEALKAE--TIHEVPIGAVIVHEGRIIGRGHNLRETSMDPTAHAEMIAIREA 67 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E R T YVTLEPC P CA I++ I RVV DP +G + Sbjct: 68 SEYLRAWRLLNCTLYVTLEPC------PMCAGAIVQSRILRVVYGTIDPKAGCAGTLMNL 121 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + +++ ++ E L ++ + Sbjct: 122 LQEDRFNHRVEVINGILREECSSLLTSFFRK 152 >gi|15827698|ref|NP_301961.1| hypothetical protein ML1340 [Mycobacterium leprae TN] gi|221230175|ref|YP_002503591.1| hypothetical protein MLBr_01340 [Mycobacterium leprae Br4923] gi|2065234|emb|CAB08270.1| hypothetical protein MLC1351.23 [Mycobacterium leprae] gi|13093249|emb|CAC31721.1| possible reductase [Mycobacterium leprae] gi|219933282|emb|CAR71435.1| possible reductase [Mycobacterium leprae Br4923] Length = 268 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 15/203 (7%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD---PEL 207 I S D A + + G + ++LR +D I+VG GTV ++ L Sbjct: 50 WIRANFITSIDGG-ATADGRTGAMAGPGDRFVFNMLRELADVIVVGAGTVRIENYSGAHL 108 Query: 208 TC-----RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 R Q P I+ +L D + +AP+++ L Sbjct: 109 PVTKRQQRQARGQSEVPQLAIVTNSGRLDRDMAVFTRTEIAPLVLTCTETAKKLRTRLAD 168 Query: 263 KNINIIYCDCRDLKKL-----LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQ 317 ++ C D K+ L L RG+ +L EGG + SFI ++D + L + Sbjct: 169 L-AYVVSCSGDDPSKVDETVVLATLQTRGLRRVLTEGGPMLLGSFIQHGMLDELCLTIAP 227 Query: 318 IVIGEGGIPSPLEEGYLEKNFMC 340 +++G L C Sbjct: 228 LIVGGRARRIATGPEQLLTRMRC 250 >gi|59711257|ref|YP_204033.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114] gi|59479358|gb|AAW85145.1| tRNA-specific adenosine deaminase [Vibrio fischeri ES114] Length = 171 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 23/156 (14%) Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 S DA +M A+ + + V +IV D +IG G + HAE Sbjct: 4 KQESRDASFYMQRAMELA--AIAEQEGEVPVGAVIVLDDEIIGEGWNRSISTHDATAHAE 61 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++AG + AT YVTLEPC P CA I+ I+RV+ D Sbjct: 62 MMAIKQAGSKIENYRLVDATLYVTLEPC------PMCAGAIVHSRIKRVIFGASDMKTGA 115 Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142 SG + + +ME + L A+ Sbjct: 116 SGSVINLFTSATAFHFVECESGVMEEACRSQLQAFF 151 >gi|210623915|ref|ZP_03294124.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275] gi|210153279|gb|EEA84285.1| hypothetical protein CLOHIR_02076 [Clostridium hiranonis DSM 13275] Length = 371 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 63/154 (40%), Gaps = 22/154 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 S D FM ALR ++ T + +IVKDG +IGRG H+E+ A+ Sbjct: 224 SDDEYFMMEALREAKKAYDKEET--PIGAVIVKDGEIIGRGHNLTEHLKDATAHSEILAI 281 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCV----DDPDVRV 111 + A ++ + G YVT+EPC C I+ IR VV+ + + Sbjct: 282 KNAAKKLKGWRLFGCKMYVTMEPC------VMCCGAIVNSRIREVVIGAKRVKNAKIEKQ 335 Query: 112 SGRGLQWLSQKGIIVD-RMMESEGKIFLHAYLTR 144 S ++ + ++E E L ++ R Sbjct: 336 SDFKKEYFEDSKVEYKYGVLEEECAGMLGSFFKR 369 >gi|223983492|ref|ZP_03633678.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM 12042] gi|223964664|gb|EEF68990.1| hypothetical protein HOLDEFILI_00958 [Holdemania filiformis DSM 12042] Length = 181 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 36/132 (27%), Positives = 50/132 (37%), Gaps = 17/132 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 S D FM A++ +R L + ++V DG ++ RG HAE+ Sbjct: 5 SKSKNDEYFMRQAIKEARKAEALDEV--PIGAVLVHDGKILARGHNLREKKQSSLAHAEI 62 Query: 58 QALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+E+A YVTLEPC P CA I++ I +VV DP Sbjct: 63 VAIEKACRKTGSWRLEDCVLYVTLEPC------PMCAGAILQSRIAKVVYGAADPKGGSV 116 Query: 113 GRGLQWLSQKGI 124 G G Sbjct: 117 GTCFNLYDIPGF 128 >gi|251788710|ref|YP_003003431.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591] gi|247537331|gb|ACT05952.1| CMP/dCMP deaminase zinc-binding [Dickeya zeae Ech1591] Length = 168 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 22/167 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56 M D +M AL ++ V ++V+ G VIG G G HAE Sbjct: 1 MSSPMDDEFWMRHALSLAQRAW--DEGEVPVGAVLVQGGNVIGEGWNRPIGRHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL++ G+ + T Y+TLEPC CA +I I R+V D Sbjct: 59 IMALQQGGQTLQNYRLLDTTLYITLEPC------VMCAGAMIHSRISRLVYGAADAKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 +G + L GI I D ++ E L + + +++ Sbjct: 113 AGSLVDILRHPGINHHIMITDGVLADECAELLSRFFRMRRQQQRDAR 159 >gi|70727433|ref|YP_254349.1| hypothetical protein SH2434 [Staphylococcus haemolyticus JCSC1435] gi|68448159|dbj|BAE05743.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 157 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 59/152 (38%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D +M A+ ++ L + +IVK+ VI TA HAE A+ Sbjct: 2 ANDEYYMKLAIEEAKKAQKL--GEVPIGAIIVKNNEVIASAHNLRETAQLPTAHAEHIAI 59 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E A + G T YVTLEPC CA I+ I +VV DP SG Sbjct: 60 ERASKVLGSWRLEGCTLYVTLEPC------VMCAGAIVMSRIPKVVYGATDPKGGCSGSL 113 Query: 116 LQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 + L + IV ++E E L + Sbjct: 114 MNLLEESQFNHRAEIVKGVLEQECGDLLRNFF 145 >gi|152981408|ref|YP_001353698.1| hypothetical protein mma_2008 [Janthinobacterium sp. Marseille] gi|151281485|gb|ABR89895.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 159 Score = 95.0 bits (235), Expect = 2e-17, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 48/125 (38%), Gaps = 17/125 (13%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALE 61 DA FM AL +R T V ++VKDG VI G G HAE+ AL Sbjct: 2 QDAIFMRQALDQARNAW--TLGEVPVGAVVVKDGEVIATGFNQPIGTHDPTAHAEIMALR 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 A G +VTLEPC C+ ++ + RVV DP G + Sbjct: 60 AAASILGNYRLPGCELFVTLEPC------VMCSGAMMHARLARVVFGAPDPKTGACGSVV 113 Query: 117 QWLSQ 121 Q Sbjct: 114 NLFEQ 118 >gi|329930226|ref|ZP_08283839.1| cytidine and deoxycytidylate deaminase zinc-binding region [Paenibacillus sp. HGF5] gi|328935248|gb|EGG31729.1| cytidine and deoxycytidylate deaminase zinc-binding region [Paenibacillus sp. HGF5] Length = 164 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 R+M A+ +R L + +IV+ +IGRG T Y G HAE+ A+ EA Sbjct: 17 ERWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 YVTLEPC P CA I++ + +++ DP +G + Sbjct: 75 SRHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + +VD +++ E L + R Sbjct: 129 LQEPRFNHRTHVVDGVLQEECASLLTQFFRR 159 >gi|303234521|ref|ZP_07321158.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna BVS033A4] gi|302494355|gb|EFL54124.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna BVS033A4] Length = 155 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +FM A+ +R + V C+IVK+G +I + T HAE++ Sbjct: 1 MENNDEKFMIKAIEQAR--IAFDLDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + T YVTLEPC C ++ I +VV D G Sbjct: 59 AINQATQVIGNFRLDNCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112 Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144 L +G I V +ME E + ++ R Sbjct: 113 SLLSLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147 >gi|297561765|ref|YP_003680739.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296846213|gb|ADH68233.1| bifunctional deaminase-reductase domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 269 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 69/184 (37%), Gaps = 9/184 (4%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--P 205 R + + S D S ++ + + LRA D +LVG T + P Sbjct: 42 DRPWVRANMVASADGGAVGPSGRSRDLSSAPDRRIMGALRALCDVVLVGAATARVEGYGP 101 Query: 206 ELTCR----LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPV--LALA 259 R L + +P ++ L D + + A ++ T + P Sbjct: 102 VRVRRAWEGLREGRARTPAVAVVSRSLDLPADL-LTEAPPHARTLVFTTSGAPRDRRREV 160 Query: 260 FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV 319 + ++ ++ D ++ L RG+ +L EGG + F+ + L+D + L S + Sbjct: 161 AARADLVVVEGDSVAPAHIVDALAERGLYRVLTEGGPRLLAEFVAAGLLDELCLTLSPHL 220 Query: 320 IGEG 323 +G G Sbjct: 221 LGSG 224 >gi|227356250|ref|ZP_03840639.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906] gi|227163714|gb|EEI48630.1| tRNA-specific adenosine deaminase [Proteus mirabilis ATCC 29906] Length = 176 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M D +M A+ + L V ++V D +I +G HAE Sbjct: 1 MNKIKDDIYWMHKAIEQAHKAQQL--GEIPVGAVLVADNKIIAKGWNHSIIDNDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL + G+ + AT Y+TLEPC CA I+ ++RVV D Sbjct: 59 IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G + L G+ I ++ E L + Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECAQLLSQFF 148 >gi|269126013|ref|YP_003299383.1| bifunctional deaminase-reductase domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310971|gb|ACY97345.1| bifunctional deaminase-reductase domain protein [Thermomonospora curvata DSM 43183] Length = 229 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 79/212 (37%), Gaps = 13/212 (6%) Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADD--PELT 208 + + S D + S + + LRA +D ++VG GTV A+ P Sbjct: 23 WLRANMIASLDGAAWV-DGRSGGLGSPGDRRLFAALRAMADVVIVGAGTVRAEGYGP--- 78 Query: 209 CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVL-ALAFRKKNINI 267 R G Q +P I+ L LDS + V++ + P A R + + Sbjct: 79 VR-PGPQGQAPPLAIVSRRLDLDLDSPVFTEPKARTVLLTVQAAPPERLRAAERVAEVIM 137 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 D D + + L RG LL EGG AV ++D + L S +++ G PS Sbjct: 138 AGEDGIDFSRAVRELAARGHRRLLCEGGPAVLARAAADGVLDELCLTLSPMLV--AGDPS 195 Query: 328 PLEEG-YLEKNFMCVRRDYFGSD--VCLEYIG 356 + G L + + D + L Y Sbjct: 196 RILAGPPLPRPLRMRPASVYEEDGFLFLRYRR 227 >gi|313900948|ref|ZP_07834438.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] gi|312954368|gb|EFR36046.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium sp. HGF2] Length = 151 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 +M AALR + + + C+IVKD +I RG T HAE+ A+++A Sbjct: 3 EEYMRAALREAEKAKKIDEV--PIGCVIVKDDKIIARGHNLRETKQQSINHAEIIAIQKA 60 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ YVTLEPC CA I++ IR V+ DP L Sbjct: 61 CKKVGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGTADPKGGSIESTLHM 114 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142 Q G + ++++E L + Sbjct: 115 YEQPGYNHYPKVESGVLQNECSQLLKNFF 143 >gi|228475284|ref|ZP_04060009.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119] gi|228270749|gb|EEK12158.1| tRNA-specific adenosine deaminase [Staphylococcus hominis SK119] Length = 162 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 56/150 (37%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ ++ L + +IVKD +I R T HAE A+E Sbjct: 4 DEFYMKCAIEEAKKARQL--GEVPIGAVIVKDNDIISRAHNLRETLQQPTAHAEHLAIER 61 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + T YVTLEPC CA ++ I RVV DP SG + Sbjct: 62 AAKVIGSWRLEDCTLYVTLEPC------VMCAGTVVMSRIPRVVYGAMDPKGGCSGSLMD 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYL 142 L I+ ++E E L + Sbjct: 116 LLQQPQFNHHAIVEQGVLEEECSNLLRQFF 145 >gi|221133296|ref|ZP_03559601.1| CMP/dCMP deaminase, zinc-binding protein [Glaciecola sp. HTCC2999] Length = 175 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 21/128 (16%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV------TAYGGCPHAEVQ 58 D +M+ AL + T P V +IV D +IG G G HAE+ Sbjct: 8 EQDELWMTHALSLADKAQ-QTGEVP-VGAVIVLDNQIIGEGYNRSIINHDPCG--HAEIM 63 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A++ A + AT YVTLEPC+ CA I+ ++RVV D +G Sbjct: 64 AIQSAAQHINNYRILDATMYVTLEPCAM------CAGAIVHARMKRVVFGASDLKTGCAG 117 Query: 114 RGLQWLSQ 121 L L Sbjct: 118 SILNLLQH 125 >gi|169824845|ref|YP_001692456.1| putative deaminase [Finegoldia magna ATCC 29328] gi|167831650|dbj|BAG08566.1| putative deaminase [Finegoldia magna ATCC 29328] Length = 155 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +FM A+ +R + V C+IVK+G +I + T HAE++ Sbjct: 1 MENNDEKFMIKAIEQAR--IAFDMDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + T YVTLEPC C ++ I +VV D G Sbjct: 59 AINQATQVIGNFRLDDCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112 Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144 L +G I V +ME E + ++ R Sbjct: 113 SLLSLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147 >gi|325479006|gb|EGC82107.1| cytidine and deoxycytidylate deaminase zinc-binding region [Anaerococcus prevotii ACS-065-V-Col13] Length = 169 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 39/125 (31%), Positives = 51/125 (40%), Gaps = 17/125 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYG----GCPHAEV 57 S D FM A+ +R + V +IV G +IGRG HAE+ Sbjct: 11 NFSKMDMFFMQEAISEARLARFV--EEVPVGAVIVYKGEIIGRGHNYTYKGKSALKHAEI 68 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A++EA E T YVT+EPCS CA II I R+V+ + DP Sbjct: 69 MAIKEASEYMDDFRLEECTMYVTMEPCSM------CAGAIINSRIDRLVIGIRDPKRGAC 122 Query: 113 GRGLQ 117 G Sbjct: 123 GSNTN 127 >gi|197335350|ref|YP_002155408.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11] gi|197316840|gb|ACH66287.1| tRNA-specific adenosine deaminase [Vibrio fischeri MJ11] Length = 174 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 23/156 (14%) Query: 2 PVSSFDA-RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 S DA +M A+ + + V +IV D +IG G + HAE Sbjct: 4 KQESRDASFYMQRAMELA--AIAEQEGEVPVGAVIVLDDEIIGEGWNRSISTHDATAHAE 61 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+++AG + AT YVTLEPC P CA I+ I+RV+ D Sbjct: 62 MMAIKQAGSKIENYRLVDATLYVTLEPC------PMCAGAIVHSRIKRVIFGASDMKTGA 115 Query: 112 SGRGLQWLSQK-----GIIVDRMMESEGKIFLHAYL 142 SG + + +ME + L A+ Sbjct: 116 SGSVINLFTSATAFHSVECESGVMEDACRSQLQAFF 151 >gi|302379537|ref|ZP_07268022.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna ACS-171-V-Col3] gi|302312444|gb|EFK94440.1| cytidine and deoxycytidylate deaminase zinc-binding region [Finegoldia magna ACS-171-V-Col3] Length = 155 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/155 (24%), Positives = 63/155 (40%), Gaps = 21/155 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +FM A+ ++ + V C+IVK+G +I + T HAE++ Sbjct: 1 MENNDEKFMIKAIEQAK--IAFDLDEVPVGCVIVKNGEIIAQAYNSVETDNNATMHAELK 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A + T YVTLEPC C ++ I +VV D G Sbjct: 59 AINQATKVIGNFRLDDCTMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112 Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTR 144 + +G I V +ME E + ++ R Sbjct: 113 SLISLNDYEGLNHKIEVKSIMEKECVELMQSFFRR 147 >gi|146293740|ref|YP_001184164.1| CMP/dCMP deaminase, zinc-binding [Shewanella putrefaciens CN-32] gi|145565430|gb|ABP76365.1| tRNA-adenosine deaminase [Shewanella putrefaciens CN-32] Length = 164 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 22/153 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61 D +M A++ + + V ++VKDG I G + HAE+ L Sbjct: 1 MDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPTAHAEILCLR 58 Query: 62 EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AG++ AT Y+TLEPC+ CA ++ I RVV D +G + Sbjct: 59 SAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGAAGTVV 112 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L + ++ L + R Sbjct: 113 NLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 145 >gi|170723352|ref|YP_001751040.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619] gi|169761355|gb|ACA74671.1| CMP/dCMP deaminase zinc-binding [Pseudomonas putida W619] Length = 159 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 S D FM AL + L V ++V+ G VIG+G HAE+ A+ Sbjct: 9 SRDQEFMRMALDLAAQGAAL--GEVPVGAVLVQHGQVIGQGFNRPIIDSDPSAHAEMVAI 66 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A + A G+T YVTLEPCS CA I+ + RVV +P + Sbjct: 67 RAAAKSASNYRLPGSTLYVTLEPCSM------CAGLIVHSRVARVVYGALEPKAGIVQSQ 120 Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142 Q +L+ + + ++ E L + Sbjct: 121 GQFFSQGFLNHRVMFEGGVLAEECGAILSEFF 152 >gi|262202204|ref|YP_003273412.1| bifunctional deaminase-reductase domain-containing protein [Gordonia bronchialis DSM 43247] gi|262085551|gb|ACY21519.1| bifunctional deaminase-reductase domain protein [Gordonia bronchialis DSM 43247] Length = 263 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 19/232 (8%) Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189 ++ + + R ++ S D + S + G H+LRA Sbjct: 22 WLAQTYAYPPKPTSPPCLTRPYVRANFVSSIDGAV-THNGRSAELAGPGDHALFHVLRAL 80 Query: 190 SDAILVGIGTVLADD-------PELTC-RLNGLQEHSPMRIILDPHFKLSLDSKIIKTAL 241 +D +LVG T +D P R Q +P ++ + + Sbjct: 81 ADVVLVGARTATVEDYGQPAEYPVFAGDRRRAEQTPAPALALVSRTLAFPIGYPPLGNPD 140 Query: 242 LAPVIIVTENDDPVL-ALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAV 298 ++ T D P + +I C D DL +L RG +L EGG + Sbjct: 141 ---TVVFTCRDAPRENRQSLVDAGATLIDCGEDTVDLPIVLDRCAERGWHRVLCEGGPTL 197 Query: 299 AHSFINSRLVDSIILYRSQIVI-GEGGIPSPLEEGYLEKNFMCVRRDYFGSD 349 S + LVD + L S ++ G+ G + +R + +D Sbjct: 198 LGSLVTEDLVDEMCLTISPNLVSGDAGR---IAHDRRPGVLRSMRAETILTD 246 >gi|160947058|ref|ZP_02094225.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270] gi|158446192|gb|EDP23187.1| hypothetical protein PEPMIC_00989 [Parvimonas micra ATCC 33270] Length = 155 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQAL 60 S D FM AL+ ++ + C+IVKD ++ RG G HAE+ A+ Sbjct: 2 SRDEYFMDIALKEAKKAYN--KGEVPIGCVIVKDDKIVSRGHNQVLSKKSGVNHAEIIAI 59 Query: 61 EEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR- 114 +AG++ +VTLEPC CA I+ I+RV++ D G Sbjct: 60 NKAGQKLGDFRLEDTELFVTLEPCCM------CAGAIVNSRIKRVIIGAMDVKRGFCGSI 113 Query: 115 ----GLQWLSQKGIIVDRMMESEGKIFLHAYL 142 Q L+ + II ++E + L + Sbjct: 114 ENVLDRQELNHRSIIKTGVLEQKCLDILQDFF 145 >gi|172056061|ref|YP_001812521.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15] gi|171988582|gb|ACB59504.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sibiricum 255-15] Length = 169 Score = 94.6 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQ 58 + +M A+ ++ + + C+IVK VI G HAE+ Sbjct: 1 MMERHEHYMRLAIEEAKKAKAI--GEVPIGCVIVKGDEVIATGYNHRETNHQATAHAELL 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+EEA + G YVTLEPC P CA I+ I V+ DP G Sbjct: 59 AIEEACNKLANWRLEGCELYVTLEPC------PMCAGAIMLSRIEHVIFGAVDPKGGCCG 112 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 + + + + ++E E L ++ Sbjct: 113 TLMNLVQDERFNHVSQLTGGVLEQECGEMLTSFF 146 >gi|264677875|ref|YP_003277782.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni CNB-2] gi|262208388|gb|ACY32486.1| CMP/dCMP deaminase, zinc-binding protein [Comamonas testosteroni CNB-2] Length = 457 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM AL +R V ++VKDG VIGRG A HAEV AL EA Sbjct: 9 EHFMRQALEQARRAAAC--GEVPVGAVVVKDGQVIGRGHNSPLSAQDPTAHAEVLALREA 66 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G T YVTLEPC C+ ++ + VV +P +G L Sbjct: 67 ARTLGNYRLEGCTLYVTLEPC------TMCSGAMLHARVDAVVYGAAEPRTGAAGSVLDV 120 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYLT 143 I ++ ++ ++ + + Sbjct: 121 FGYPAINHQTRVLRGVLAAQCSALMAEFFQ 150 >gi|330944974|gb|EGH46766.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase [Pseudomonas syringae pv. pisi str. 1704B] Length = 138 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDC---RDLKKLLTILVG 284 +L D+ + ++VT + + + D DL++L+ L Sbjct: 1 LRLPFDAPFFQAGSA---LVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAA 57 Query: 285 RGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIP---SPLEEGYLEKNFMCV 341 RGV +LVE G +A +F LVD L+ + +G P PL + V Sbjct: 58 RGVNEVLVEAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIV 117 Query: 342 RRDYFGSD 349 G+D Sbjct: 118 EMRAVGND 125 >gi|120598186|ref|YP_962760.1| CMP/dCMP deaminase, zinc-binding [Shewanella sp. W3-18-1] gi|120558279|gb|ABM24206.1| tRNA-adenosine deaminase [Shewanella sp. W3-18-1] Length = 164 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 35/153 (22%), Positives = 56/153 (36%), Gaps = 22/153 (14%) Query: 6 FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALE 61 D +M A++ + + V ++VKDG I G + HAE+ L Sbjct: 1 MDEYWMQVAMQMAEKAE--AAGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEILCLR 58 Query: 62 EAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 AG++ AT Y+TLEPC+ CA ++ I RVV D +G + Sbjct: 59 SAGKKLENYRLLDATLYITLEPCAM------CAGAMVHSRIARVVYGARDEKTGAAGTVV 112 Query: 117 QWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 L + ++ L + R Sbjct: 113 NLLQHPAFNHQVEVTSGVLAEACSAQLSRFFKR 145 >gi|261403958|ref|YP_003240199.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] gi|261280421|gb|ACX62392.1| CMP/dCMP deaminase zinc-binding protein [Paenibacillus sp. Y412MC10] Length = 164 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 63/151 (41%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 R+M A+ +R L + +IV+ +IGRG T Y G HAE+ A+ EA Sbjct: 17 ERWMREAIAEARKAEEL--GEVPIGAVIVRGDEIIGRGYNLRETTYDGTAHAEMVAIREA 74 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 YVTLEPC P CA I++ + +++ DP +G + Sbjct: 75 SRHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPQLIYGTGDPKAGCAGTLMNL 128 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + +VD +++ E L + R Sbjct: 129 LQEPRFNHRTHVVDGVLQEECASLLTQFFRR 159 >gi|271501609|ref|YP_003334635.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586] gi|270345164|gb|ACZ77929.1| CMP/dCMP deaminase zinc-binding protein [Dickeya dadantii Ech586] Length = 170 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 65/176 (36%), Gaps = 22/176 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAE 56 M D +M AL ++ V ++V+ VIG G G HAE Sbjct: 1 MSSPMDDEFWMRHALSLAQRAW--DEGEVPVGAVLVQGDRVIGEGWNRPIGRHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL++ G+ + T Y+TLEPC CA +I I R+V D Sbjct: 59 IMALQQGGQVLQNYRLLDTTLYITLEPC------VMCAGAMIHSRITRLVYGAADAKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 +G + L G+ I D ++ E L + + +++ S D Sbjct: 113 AGSLVDILRHPGMNHQIAITDGVLAQECSELLSRFFRMRRQQQREARAGRDTSHDT 168 >gi|297587228|ref|ZP_06945873.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516] gi|297575209|gb|EFH93928.1| tRNA-specific adenosine deaminase [Finegoldia magna ATCC 53516] Length = 155 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 21/162 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQ 58 + + D +FM A+ ++ + V C+IVKDG +I + + HAE++ Sbjct: 1 MENNDEKFMMKAIEQAK--IAYDMDEVPVGCVIVKDGEIIAQAYNSVEKDKNATMHAELK 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ +A E YVTLEPC C ++ I +VV D G Sbjct: 59 AINQATEFIGNFRLDDCIMYVTLEPC------VMCTGALVYSRIPKVVFGAFDKKRGACG 112 Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSH 151 + +G I V +ME E + ++ R EK + Sbjct: 113 SLISLNDYEGLNHKIEVKSIMEKECVELMQSFFRRIREKNRN 154 >gi|313156981|gb|EFR56413.1| riboflavin biosynthesis protein RibD C-terminal domain protein [Alistipes sp. HGB5] Length = 358 Score = 94.2 bits (233), Expect = 3e-17, Method: Composition-based stats. Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 14/184 (7%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 ITL AV+ D + + I+ +V+ LRA DAILVG T+ DDP L Sbjct: 1 MRITLSAAVTADGFLDDNSPRRLIISTPEDWAEVYRLRAAHDAILVGAETLRRDDPSLLV 60 Query: 210 RLNGLQEH------SP--MRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 R ++ P + L +LS + + P + + Sbjct: 61 RDEEVRARRREQGLPPDIAKATLTGTGELSPGLRFFTEGEAERYVF-----SPHEIDSLQ 115 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIV-I 320 I K ++T L RGV L+VEGGAAV F+ + D++ L + + + Sbjct: 116 NIATVISTEGPITAKLIVTQLEKRGVERLMVEGGAAVLRMFLGEGMADTLRLAVNPQLRL 175 Query: 321 GEGG 324 G G Sbjct: 176 GAAG 179 Score = 73.4 bits (179), Expect = 5e-11, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 6/126 (4%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIVK-DGIVIGRGVTAYGGCPHAEVQALEE 62 S+ D RF+ A+ R ++T+ V ++V DG + HAE +A+ + Sbjct: 213 SAADLRFLKQAVDEGRK-CTPSATSYCVGAVVVAADGRIFAGHTHETSPTHHAEQEAIAK 271 Query: 63 AGEE---ARGATAYVTLEPCSHYGRSP-PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 A RGA Y ++EPCS P C Q +++ G R V + +PD V RG Sbjct: 272 ALAAGAPLRGAAMYSSMEPCSQRASEPESCTQLLLKYGFARAVFALYEPDCFVCCRGALT 331 Query: 119 LSQKGI 124 L + G+ Sbjct: 332 LREAGV 337 >gi|157371891|ref|YP_001479880.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568] gi|157323655|gb|ABV42752.1| CMP/dCMP deaminase zinc-binding [Serratia proteamaculans 568] Length = 170 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 45/171 (26%), Positives = 65/171 (38%), Gaps = 22/171 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M ALR + V L+V D VIG G G HAE+ AL + Sbjct: 6 DEYWMRQALRLALRAQ--EEGEVPVGALLVLDNQVIGEGWNRPIGRHDPTAHAEIMALRQ 63 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G + AT YVTLEPC CA ++ IRR+V D +G + Sbjct: 64 GGAVLQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGAADVKTGAAGSLVD 117 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNM 163 L G+ I+ ++ E L + + E++ + DN Sbjct: 118 ILRHPGMNHQVEILSGVLAEECAATLSNFFRMRREQQKALKQAQRTDVDNK 168 >gi|312142718|ref|YP_003994164.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp. 'sapolanicus'] gi|311903369|gb|ADQ13810.1| CMP/dCMP deaminase zinc-binding protein [Halanaerobium sp. 'sapolanicus'] Length = 149 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 +FD ++M AL +R + ++V D V+GRG HAE+ AL Sbjct: 2 NFDQKYMQMALAEARKAYQRAEV--PIGAVVVCDDRVVGRGFNLREQTQDPTSHAEIIAL 59 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +EA + YVTLEPC P CA I++ I+R+V DP Sbjct: 60 KEAAKEQASWRLEDCQLYVTLEPC------PMCAGAILQSRIKRLVYAAADPKAGAVKSL 113 Query: 116 LQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 Q L + + +V +ME+E L + Sbjct: 114 YQLLGDDRFNHQVEVVSGVMEAEAAQLLKDFF 145 >gi|293570161|ref|ZP_06681239.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071] gi|291587310|gb|EFF19196.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1071] Length = 171 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%) Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M ++ D ++M AL ++ L + ++V DG VIGRG T Sbjct: 1 MVNTNLDTVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58 Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A++EA E+ A +VTLEPC P C+ +I + V DP Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112 Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 +G + L + + ++E E + L + Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152 >gi|229545278|ref|ZP_04434003.1| nucleoside deaminase [Enterococcus faecalis TX1322] gi|229309628|gb|EEN75615.1| nucleoside deaminase [Enterococcus faecalis TX1322] Length = 173 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +VTLEPC P C+ ++ I V DP +G + Sbjct: 72 CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E ++ L + R Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKR 156 >gi|6572098|emb|CAB63082.1| riboflavin-specific deaminase [Bartonella bacilliformis] Length = 107 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 275 LKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYL 334 +L +L G+ S+L+EGGA F+N+ VD +I + + +++GE I +P E YL Sbjct: 19 PLAILQLLCQLGINSVLLEGGAETGEKFLNAGCVDHLICFYASVILGENRIKAPYFETYL 78 Query: 335 EKNFMCVRRDYFGSDVCLEYIGKNLCLQEL 364 + F + +D + K LC Q L Sbjct: 79 SE-FNEIETKMLENDRLRRWRRKILCSQGL 107 >gi|297616226|ref|YP_003701385.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus lipocalidus DSM 12680] gi|297144063|gb|ADI00820.1| CMP/dCMP deaminase zinc-binding protein [Syntrophothermus lipocalidus DSM 12680] Length = 155 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 26/160 (16%) Query: 1 MPVSSFDARFMSAALRF--SRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54 M + D FM A+ + +H G V ++VK+G +I H Sbjct: 1 MTLFLHDEDFMRRAVELGWAAFHQGEV----PVGAVVVKNGEIISSAHNEKEKRQDATAH 56 Query: 55 AEVQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ A++ A + + T Y T+EPC P CA I++ I++VV D Sbjct: 57 AEMLAIQRASQALGTWRLQDTTLYSTIEPC------PMCAGAIVQARIKKVVFGARDLKA 110 Query: 110 RVSGRGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTR 144 G + L+ + +++ ++E E + + R Sbjct: 111 GAGGSLINVLDFPGLNHRVEVIEGVLEDECTELMTEFFRR 150 >gi|169830233|ref|YP_001716215.1| CMP/dCMP deaminase [Candidatus Desulforudis audaxviator MP104C] gi|169637077|gb|ACA58583.1| CMP/dCMP deaminase, zinc-binding [Candidatus Desulforudis audaxviator MP104C] Length = 156 Score = 93.8 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 41/155 (26%), Positives = 69/155 (44%), Gaps = 22/155 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57 P + A +M ALR + V ++V+DG +IGRG HAE+ Sbjct: 5 PDLAVHAGYMREALREAEKA--YAKGEVPVGAVVVQDGTIIGRGHNLREADNDASAHAEL 62 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ +A + GAT YVT+EPC P CA +++ +RRVV DP + Sbjct: 63 LAMRQAAQVSGDWRLSGATVYVTMEPC------PMCAGALVQFRVRRVVYGTADPKAGAA 116 Query: 113 GRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 G ++ L + ++ ++E+E + + + Sbjct: 117 GSVVELLREPRFNHQVEVIPGVLEAECREIVQRFF 151 >gi|312139475|ref|YP_004006811.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase ribd [Rhodococcus equi 103S] gi|325672635|ref|ZP_08152331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi ATCC 33707] gi|311888814|emb|CBH48126.1| putative 5-amino-6-(5-phosphoribosylamino)uracil reductase RibD [Rhodococcus equi 103S] gi|325556512|gb|EGD26178.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Rhodococcus equi ATCC 33707] Length = 262 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 79/223 (35%), Gaps = 18/223 (8%) Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV------- 200 R I S D + S + K +LR +D ++VG GTV Sbjct: 43 DRPWIRTNFVSSIDGAV-TVDGVSAGLGTPADKRVFAVLRELADVVVVGAGTVRSENYGG 101 Query: 201 -LADDPELTCRL-NGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL 258 D R +GL P+ ++ +L S++ + P+++ + D Sbjct: 102 ARTDADSAARRERSGLAAVPPIAVVTAS-ARLDPASRLFTDTTVPPLVLTSAAADASRVQ 160 Query: 259 AFRKKNINIIYCDCRDL--KKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 R ++ R++ ++ L RG+ +L EGG + + I +VD + L S Sbjct: 161 RLRDAGADVEIVAEREIGGTDVVAALGLRGLRRVLCEGGPGLFGTLIADGVVDELCLTTS 220 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSD---VCLEYIG 356 +++G G + + R D + ++ Sbjct: 221 PVLVG--GAAGRIAHSSIASPTAMSRAHVLADDDGTLLTRWVR 261 >gi|325928669|ref|ZP_08189845.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118] gi|325540965|gb|EGD12531.1| tRNA-adenosine deaminase [Xanthomonas perforans 91-118] Length = 171 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 44/164 (26%), Positives = 65/164 (39%), Gaps = 22/164 (13%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKD-GIVIGRGVT----AYGGCPHAE 56 P ++ D +M AL+ + P V L+V G V+G G ++ HAE Sbjct: 12 PYAAIDEHWMRHALQLAERAERDYDEIP-VGALLVDAQGNVLGEGWNFNIASHDPSAHAE 70 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + A+ EAG G T YVTLEPC+ CA +I I RVV DP Sbjct: 71 IVAMREAGRRLANHRLIGCTLYVTLEPCAM------CAMAMIHARIARVVFAASDPKTGA 124 Query: 112 SGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRS 150 G L+ + + ++ +E + L Y + K Sbjct: 125 CGSVFDLLADPRHNHRVQVCGGVLAAEASLRLTNYFRAKRGKPP 168 >gi|56478507|ref|YP_160096.1| cytosine/adenosine deaminase [Aromatoleum aromaticum EbN1] gi|56314550|emb|CAI09195.1| probable cytosine/adenosine deaminases [Aromatoleum aromaticum EbN1] Length = 154 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 63/150 (42%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D FM AAL +R G P V ++V DG ++GRG + HAEV AL + Sbjct: 3 DEDFMRAALEQARMA-GACDEVP-VGAVVVLDGEIVGRGFNQPIRRHDPSAHAEVMALRD 60 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 AGE G +VTLEPC+ C+ I+ + RVV DP V+G + Sbjct: 61 AGERLGNYRFPGCELFVTLEPCAM------CSGAIMHARVARVVFGARDPRTGVAGSIID 114 Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142 L+ + ++ E L + Sbjct: 115 LFAERRLNHHAEVAGGVLADECGRLLSGFF 144 >gi|238784197|ref|ZP_04628210.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970] gi|238714906|gb|EEQ06905.1| tRNA-specific adenosine deaminase [Yersinia bercovieri ATCC 43970] Length = 181 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 66/170 (38%), Gaps = 22/170 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAEVQALEE 62 D +M AL + V ++V D VIG G HAE+ AL + Sbjct: 19 DEYWMQRALMLALRAQ--EEGEVPVGAVLVLDNQVIGEGWNRSICDSDPTAHAEIMALRQ 76 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G+ + AT YVTLEPC CA ++ IRR+V +D +G L Sbjct: 77 GGQVVQNYRLLDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAAGSLLD 130 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 L G+ I ++ L A+ ++ ++ + + + S D Sbjct: 131 ILRHPGMNHQVEISAGVLAEACSQQLSAFFRQRRAQQKALRVALRASVDK 180 >gi|254490420|ref|ZP_05103607.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Methylophaga thiooxidans DMS010] gi|224464386|gb|EEF80648.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [Methylophaga thiooxydans DMS010] Length = 149 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 17/124 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQAL 60 S + R+M AL ++ V +IV + +IG G HAE+ AL Sbjct: 2 SDEIRWMQRALALAQRAE--AEGEVPVGAVIVLNNEIIGEGWNQPISANDATAHAEIIAL 59 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +A + GA Y+TLEPC+ CA ++ I +VV +P +G Sbjct: 60 RQACQLMNNYRLPGADMYITLEPCAM------CAGALVHARINKVVYATAEPKTGAAGSC 113 Query: 116 LQWL 119 + Sbjct: 114 VDIF 117 >gi|308066929|ref|YP_003868534.1| hypothetical protein PPE_00098 [Paenibacillus polymyxa E681] gi|305856208|gb|ADM67996.1| Conserved hypothetical protein [Paenibacillus polymyxa E681] Length = 163 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 59/149 (39%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 A +M A++ + L + +IVKD +IGRG T HAE+ A+ +A Sbjct: 4 AYWMKEAIQEAYKAEAL--GEVPIGAVIVKDNEIIGRGYNLRETDADPTAHAEMVAIRQA 61 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E YVTLEPC P CA I++ + ++ DP +G + Sbjct: 62 SEHLGAWRLLDCRLYVTLEPC------PMCAGAIVQSRVPHLIYGTTDPKAGCAGTLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYL 142 L + +++ E L ++ Sbjct: 116 LQEPRFNHCTEVNSGVLQEECASLLTSFF 144 >gi|300860777|ref|ZP_07106864.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TUSoD Ef11] gi|300849816|gb|EFK77566.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TUSoD Ef11] gi|315146059|gb|EFT90075.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX2141] Length = 173 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +VTLEPC P C+ ++ I V DP +G + Sbjct: 72 CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E ++ L + + Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156 >gi|294102217|ref|YP_003554075.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] gi|293617197|gb|ADE57351.1| CMP/dCMP deaminase zinc-binding protein [Aminobacterium colombiense DSM 12261] Length = 156 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 20/160 (12%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY--GGCPHAEVQ 58 M S D FM+ AL +R VA L+V++ VIG+G + HAE+ Sbjct: 1 MIHSDTDIFFMNMALDEARKAA--EHGEVPVAALVVRNNEVIGKGSNSKHLDPTAHAEII 58 Query: 59 ALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+ EA E RG+T YVTLEPC P CA I+ I+ +V DP G Sbjct: 59 AIREATERLGTWNLRGSTLYVTLEPC------PMCAGAIVLSRIKCLVYGAADPRAGACG 112 Query: 114 RGLQW-----LSQKGIIVDRMMESEGKIFLHAYLTRQVEK 148 L+ + ++ ++ E L Y ++ + Sbjct: 113 TLYNIVQDSRLNHRCEVIKGVLAQESANLLWDYFKKRRQN 152 >gi|229917437|ref|YP_002886083.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b] gi|229468866|gb|ACQ70638.1| CMP/dCMP deaminase zinc-binding [Exiguobacterium sp. AT1b] Length = 166 Score = 93.8 bits (232), Expect = 4e-17, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 58/152 (38%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 D RFM A+ ++ + + C+IVK VI G T HAE+ A+ Sbjct: 2 ERDERFMQLAIEEAKKAEAI--GEVPIGCVIVKGDQVIATGHNRRETDRLAAAHAEMIAI 59 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 E A E YVTLEPC P CA I+ ++RV+ DP G Sbjct: 60 ETANETLGNWRLEDCELYVTLEPC------PMCAGAIVLSRVKRVIFGAHDPKGGCCGTL 113 Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 + + + + + ++ E L + Sbjct: 114 MNLVQDERFNHQAEVTENVLAEECGQLLTDFF 145 >gi|146308436|ref|YP_001188901.1| CMP/dCMP deaminase, zinc-binding [Pseudomonas mendocina ymp] gi|145576637|gb|ABP86169.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas mendocina ymp] Length = 158 Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQAL 60 S D FM AL +R +G V ++V+DG V+G+G + HAE+ A+ Sbjct: 10 SRDEHFMRLALVQAR--LGAEQGEVPVGAVLVQDGEVVGQGFNCPILRHDPSAHAEMVAI 67 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A + + G+T YVTLEPCS CA I+ I RVV +P V+ Sbjct: 68 RAAAQSVQNYRLPGSTLYVTLEPCSM------CAGLIVHARIARVVYAASEPRAGVAISQ 121 Query: 116 LQ-----WLSQKGIIVDRMMESEGKIFLHAYL 142 Q +L+ + ++ ++ E L + Sbjct: 122 GQFFDQGFLNHRVLVEGGLLAEESGALLKDFF 153 >gi|229513031|ref|ZP_04402497.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21] gi|254285542|ref|ZP_04960506.1| zinc-binding domain protein [Vibrio cholerae AM-19226] gi|150424404|gb|EDN16341.1| zinc-binding domain protein [Vibrio cholerae AM-19226] gi|229349924|gb|EEO14878.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae TMA 21] Length = 193 Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERNDAERKN 191 >gi|69245245|ref|ZP_00603323.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Enterococcus faecium DO] gi|257880130|ref|ZP_05659783.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933] gi|257882362|ref|ZP_05662015.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502] gi|257885559|ref|ZP_05665212.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501] gi|257891221|ref|ZP_05670874.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410] gi|257894033|ref|ZP_05673686.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408] gi|258614535|ref|ZP_05712305.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus faecium DO] gi|260560261|ref|ZP_05832437.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68] gi|293560645|ref|ZP_06677132.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162] gi|294617818|ref|ZP_06697430.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679] gi|294621156|ref|ZP_06700343.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317] gi|314938786|ref|ZP_07846059.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133a04] gi|314941552|ref|ZP_07848438.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133C] gi|314947607|ref|ZP_07851016.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0082] gi|314951363|ref|ZP_07854416.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133A] gi|314993109|ref|ZP_07858496.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133B] gi|314996760|ref|ZP_07861775.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133a01] gi|68195920|gb|EAN10354.1| Cytidine/deoxycytidylate deaminase, zinc-binding region [Enterococcus faecium DO] gi|257814358|gb|EEV43116.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,230,933] gi|257818020|gb|EEV45348.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,502] gi|257821415|gb|EEV48545.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,501] gi|257827581|gb|EEV54207.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,410] gi|257830412|gb|EEV57019.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium 1,231,408] gi|260073606|gb|EEW61932.1| cytidine/deoxycytidylate deaminase [Enterococcus faecium C68] gi|291595929|gb|EFF27210.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1679] gi|291599272|gb|EFF30302.1| tRNA-specific adenosine deaminase [Enterococcus faecium U0317] gi|291605396|gb|EFF34843.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1162] gi|313589110|gb|EFR67955.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133a01] gi|313592389|gb|EFR71234.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133B] gi|313596469|gb|EFR75314.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133A] gi|313599640|gb|EFR78483.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133C] gi|313641895|gb|EFS06475.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0133a04] gi|313645848|gb|EFS10428.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecium TX0082] Length = 171 Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 26/160 (16%) Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M ++ D ++M AL ++ L + ++V DG VIGRG T Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVIGRGYNLRETTQDAT 58 Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A++EA E+ A +VTLEPC P C+ +I + V DP Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112 Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 +G + L + + ++E E + L + Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152 >gi|108799186|ref|YP_639383.1| hypothetical protein Mmcs_2219 [Mycobacterium sp. MCS] gi|119868301|ref|YP_938253.1| hypothetical protein Mkms_2265 [Mycobacterium sp. KMS] gi|126434794|ref|YP_001070485.1| hypothetical protein Mjls_2208 [Mycobacterium sp. JLS] gi|108769605|gb|ABG08327.1| bifunctional deaminase-reductase-like protein [Mycobacterium sp. MCS] gi|119694390|gb|ABL91463.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp. KMS] gi|126234594|gb|ABN97994.1| bifunctional deaminase-reductase domain protein [Mycobacterium sp. JLS] Length = 257 Score = 93.4 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 47/257 (18%), Positives = 85/257 (33%), Gaps = 23/257 (8%) Query: 120 SQKGIIVDRMMESEGKIFLH---AYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 S G + E Y +R + + S D +A S + Sbjct: 4 SAAGTQFTVLGAVESVADDRVGDFYAYPDALRRCWVRGNMIASVDGGATVA-GRSGGLGA 62 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADD---PELTCRLN------GLQEHSPMRIILDPH 227 + +R +D I+VG TV +D +L+ G E P+ +L Sbjct: 63 AGDRALFAKMRQAADVIVVGASTVRTEDYSGAQLSAAARQDRAARGQSEVPPIA-VLTRS 121 Query: 228 FKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI----IYCDCRDLKKLLTILV 283 L D+K+ + + P+++ + F + D D L +L Sbjct: 122 ADLDHDAKLFRRTEVPPILLTSARTAATARERFGGLADVVDASGPEPDDVDPATALDLLA 181 Query: 284 GRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEKNFMCVRR 343 RG+ +L EGG V F + L+D + + + +++G G + R Sbjct: 182 ARGLLRVLTEGGPGVLGLFTAADLLDELCVTVAPVLVGGEAQRIVTGPGQVRTPLR--RS 239 Query: 344 DYFGSD---VCLEYIGK 357 G D + Y+ Sbjct: 240 HILGDDDGYLYCRYVRD 256 >gi|297568720|ref|YP_003690064.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924635|gb|ADH85445.1| bifunctional deaminase-reductase domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 212 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 14/172 (8%) Query: 178 ISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQ-EHSPMRIILDPHFKLSLDSKI 236 + + R +DA L+G GT+ D E+ R G + +R I+ +L L+ + Sbjct: 24 QDRRFLEESRQATDASLLGAGTLREGDAEM--RGPGGILPENRIRAIISASGRLPLEQRK 81 Query: 237 IKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRD----LKKLLTILVGRGVTSLLV 292 I P+I LA + +I +D L L RGV LL+ Sbjct: 82 IFQIGPRPLIFTAAERAKSLADQ-AGQRAEVIALPAKDGFLDLAAACRKLARRGVKELLL 140 Query: 293 EGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS------PLEEGYLEKNF 338 EGG + + R+VD +++ + + G S PL + +L+ Sbjct: 141 EGGGTLNFHALRQRIVDELLVTIAPKLSGHRAAISLADGAEPLGDPFLDLQL 192 >gi|253577340|ref|ZP_04854657.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786 str. D14] gi|251843240|gb|EES71271.1| CMP/dCMP deaminase, zinc-binding [Paenibacillus sp. oral taxon 786 str. D14] Length = 165 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEVQALEEA 63 +M+ A+R +R + + +IV+ ++GRG G HAE+ A+ EA Sbjct: 19 EYWMAEAIREARKAEAI--GEVPIGAVIVRGDEIVGRGHNLRESSLDGTAHAEMIAIREA 76 Query: 64 GEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 E YVTLEPC P CA I++C + V+ DP +G + Sbjct: 77 SERLGAWRLLHCRLYVTLEPC------PMCAGAIVQCRVPHVIYGAPDPKAGCAGTLMNL 130 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + I +++ E L + R Sbjct: 131 LQEPRFNHRTDITSGILQEECASLLTEFFRR 161 >gi|293552936|ref|ZP_06673591.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039] gi|291602912|gb|EFF33109.1| tRNA-specific adenosine deaminase [Enterococcus faecium E1039] Length = 171 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 26/160 (16%) Query: 1 MPVSSFD----ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGC 52 M ++ D ++M AL ++ L + ++V DG V+GRG T Sbjct: 1 MVNTNLDAVEKEKWMRLALAEAKKAEMLHEV--PIGAVVVLDGKVVGRGYNLRETTQDAT 58 Query: 53 PHAEVQALEEAGEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDP 107 HAE+ A++EA E+ A +VTLEPC P C+ +I + V DP Sbjct: 59 THAEMLAIKEACEKVGSWRLEDAALFVTLEPC------PMCSGAMILSRVAEVYFGAYDP 112 Query: 108 DVRVSGRGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 +G + L + + ++E E + L + Sbjct: 113 KGGTAGTLMNLLEDERFNHQAYVEGGILEDECGMILTDFF 152 >gi|295402713|ref|ZP_06812655.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius C56-YS93] gi|312109168|ref|YP_003987484.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1] gi|294975244|gb|EFG50880.1| CMP/dCMP deaminase zinc-binding [Geobacillus thermoglucosidasius C56-YS93] gi|311214269|gb|ADP72873.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y4.1MC1] Length = 161 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 22/152 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D +M A+ ++ + + +IV+ G VI R TA HAE+ A++E Sbjct: 4 DEYYMRLAIEEAKQAEQI--GEVPIGAIIVQGGNVIARAHNLRETAQRAIAHAEILAIDE 61 Query: 63 AGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A ++A AT YVTLEPC+ CA I+ I+RVV DP +G + Sbjct: 62 ACKKAGSWRLEDATLYVTLEPCAM------CAGAIVLARIKRVVFGASDPKGGCAGTLMN 115 Query: 118 WLS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++ +++ E L + + Sbjct: 116 LLQEGRFNHQAEVIGGVLQEECGQMLSNFFRK 147 >gi|238753915|ref|ZP_04615275.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473] gi|238707903|gb|EEQ00261.1| tRNA-specific adenosine deaminase [Yersinia ruckeri ATCC 29473] Length = 171 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 59/156 (37%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAE 56 M D +M AL ++ V ++V D IG G + HAE Sbjct: 1 MSTEYNDEYWMRQALELAQRAQ--EEGEVPVGAVLVLDNQAIGIGWNRPIVHHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL + G+ + AT YVTLEPC CA ++ IRR+V +D Sbjct: 59 MMALRQGGQALQNYRLLNATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDIKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G L L G+ I ++ E L + Sbjct: 113 AGSLLDILRHPGMNHQVEITAGVLAEECSQTLSTFF 148 >gi|289627113|ref|ZP_06460067.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330869937|gb|EGH04646.1| CMP/dCMP deaminase, zinc-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 271 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 8/128 (6%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA-GEEA 67 + M+AA+ + TS P V +IVK+G VI G HAE A+E+ + Sbjct: 9 QAMNAAIEQLKK---CTS-YPKVGAVIVKNGEVISTGYRGEVSGKHAERVAIEKLPNPDL 64 Query: 68 RGATAYVTLEPC-SHYGRSP--PCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 G+T Y TLEPC +G P CA + + + VV+ V DP+ R+ +G + L + G+ Sbjct: 65 TGSTIYTTLEPCVEMHGLQPHKSCAGLLKDLNVEHVVIGVLDPNGRIYCQGYEELIKAGV 124 Query: 125 IVDRMMES 132 V Sbjct: 125 KVTFFTPE 132 >gi|237653174|ref|YP_002889488.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T] gi|237624421|gb|ACR01111.1| CMP/dCMP deaminase zinc-binding [Thauera sp. MZ1T] Length = 154 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AAL +R G P V ++V G ++GRG G HAE+ AL + Sbjct: 3 DEDYMRAALEQAR-AAGAADEVP-VGAVVVCGGEIVGRGFNQPIGRHDPTAHAEIMALRD 60 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A G YVTLEPC+ C+ I+ I RVV DP V+G L Sbjct: 61 AAAHLGNYRLPGCELYVTLEPCAM------CSGAIMHARIARVVFGARDPKTGVAGSVLD 114 Query: 118 W-----LSQKGIIVDRMMESEGKIFLHAYL 142 L+ I ++ E L ++ Sbjct: 115 LFAEPRLNHHATIEGGLLADECGRMLSSFF 144 >gi|255023462|ref|ZP_05295448.1| tRNA-specific adenosine deaminase [Listeria monocytogenes FSL J1-208] Length = 156 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 22/150 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 A FM AL + + + ++V DG +IGR T+ HAE+ A+++A Sbjct: 4 AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 62 CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L + Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKNFFQ 145 >gi|295133748|ref|YP_003584424.1| guanine deaminase [Zunongwangia profunda SM-A87] gi|294981763|gb|ADF52228.1| guanine deaminase [Zunongwangia profunda SM-A87] Length = 158 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 16/116 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58 ++ D +FM A+ + + + P ++VKDG +I G + HAE+ Sbjct: 1 MTEDDKKFMRRAIALAEEGMNTGAGGP-FGAVVVKDGEIIAEGWNIVTSSNDPTAHAEIT 59 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 A+ A E + Y + EPC P C I ++V ++ D Sbjct: 60 AIRRACENLNTFQLENCVLYTSCEPC------PMCLGAIYWARPKKVFYALNHSDA 109 >gi|238788214|ref|ZP_04632009.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC 33641] gi|238723801|gb|EEQ15446.1| tRNA-specific adenosine deaminase [Yersinia frederiksenii ATCC 33641] Length = 191 Score = 93.4 bits (231), Expect = 5e-17, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 22/155 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAEV 57 P D +M AL + V ++V D VIG G HAE+ Sbjct: 27 PAEYSDEYWMQRALALALRAQ--EEGEVPVGAILVLDNQVIGEGWNRPIRDNDPTAHAEI 84 Query: 58 QALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 AL + G + AT YVTLEPC CA ++ IRR+V +D + Sbjct: 85 MALRQGGRAVQNYRLIDATLYVTLEPC------VMCAGAMVHSRIRRLVYGANDLKTGAA 138 Query: 113 GRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 G L L G+ + ++ L A+ Sbjct: 139 GSLLDILRHPGMNHQIEVCSGVLADACSHQLSAFF 173 >gi|254830845|ref|ZP_05235500.1| hypothetical protein Lmon1_05774 [Listeria monocytogenes 10403S] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 63/162 (38%), Gaps = 26/162 (16%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHIT 153 L + +MESE L ++ ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQELRKRNRFNR 155 >gi|290891900|ref|ZP_06554897.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J2-071] gi|290558494|gb|EFD92011.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J2-071] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 A FM AL + + + ++V DG +IGR T+ HAE+ A+++A Sbjct: 4 AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 62 CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L ++ Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145 >gi|152971415|ref|YP_001336524.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150956264|gb|ABR78294.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 172 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 22/169 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 11 DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 68 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G + AT YVTLEPC CA ++ I R+V D +G + Sbjct: 69 GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 122 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G+ I + ++ L + + E++ + + + Sbjct: 123 VLHHPGMNHRVEISEGVLAESCSAMLSDFFRWRREEKKALKKAREQTGE 171 >gi|256832227|ref|YP_003160954.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603] gi|256685758|gb|ACV08651.1| CMP/dCMP deaminase zinc-binding [Jonesia denitrificans DSM 20603] Length = 283 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 10/130 (7%) Query: 1 MPVS--SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQ 58 MP+S + A+ + S N V +I + V+ G + HAE Sbjct: 1 MPISVGEVEHAHAKKAIEEALKS----SDNARVGAVIARGETVLATGYKSEIDKLHAEQI 56 Query: 59 ALEEA---GEEARGATAYVTLEPCSH-YGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 AL +A G + +GAT Y T+EPC++ PCA+ + E GI V + DP+ +V Sbjct: 57 ALHKAEMQGVDVKGATLYTTMEPCANSRTSRVPCAELVAEAGIVEVHIGEYDPNPQVYRL 116 Query: 115 GLQWLSQKGI 124 G + L +GI Sbjct: 117 GWKHLRDRGI 126 >gi|16804756|ref|NP_466241.1| hypothetical protein lmo2719 [Listeria monocytogenes EGD-e] gi|224502871|ref|ZP_03671178.1| hypothetical protein LmonFR_10179 [Listeria monocytogenes FSL R2-561] gi|255029049|ref|ZP_05301000.1| hypothetical protein LmonL_07681 [Listeria monocytogenes LO28] gi|16412219|emb|CAD00932.1| lmo2719 [Listeria monocytogenes EGD-e] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +MESE L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145 >gi|220932912|ref|YP_002509820.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168] gi|219994222|gb|ACL70825.1| tRNA-adenosine deaminase [Halothermothrix orenii H 168] Length = 159 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 17/124 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 D FM AL +R + L + ++V +G ++G G T HAE+ A+ + Sbjct: 4 DEDFMELALEEARKALAL--EEVPIGAVVVCNGEIVGSGHNLKETENDPTAHAEIVAIRD 61 Query: 63 AGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + YVT+EPC P CA I++ ++RVV DP V+G Sbjct: 62 AARKLSSWRLNECQLYVTIEPC------PMCAGAIMQARLQRVVYGAVDPKAGVAGSLYN 115 Query: 118 WLSQ 121 L Sbjct: 116 LLQD 119 >gi|167749860|ref|ZP_02421987.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702] gi|167657172|gb|EDS01302.1| hypothetical protein EUBSIR_00828 [Eubacterium siraeum DSM 15702] Length = 150 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIV-KDGIVIGRGVTAYGG----CPHAEVQA 59 + D +M+ + ++ V ++V KDG +IG G HAE+ A Sbjct: 2 TADEEYMTLCIELAKKAA--EKGECPVGAIVVDKDGRIIGEGYNMREAEQMPTAHAEIIA 59 Query: 60 LEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGR 114 +E+A + T YVTLEPC P CA II I+R+V D Sbjct: 60 IEQAAKAMNSWRLTECTLYVTLEPC------PMCAGAIINSRIKRLVYGAFDEKGGACAS 113 Query: 115 GLQW----LSQKGIIVDRMMESEGKIFLHAYL 142 ++ + + ++ R+++ E L + Sbjct: 114 LMEIFDYPFNHRPMVRSRVLQDECAKLLTEFF 145 >gi|170767485|ref|ZP_02901938.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627] gi|170123819|gb|EDS92750.1| tRNA-specific adenosine deaminase [Escherichia albertii TW07627] Length = 178 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 20 EYWMRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA +I I RVV D +G + Sbjct: 78 GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131 Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G + + + ++ L + R + K S D Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKARKKAQSSTD 178 >gi|290476033|ref|YP_003468930.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii SS-2004] gi|289175363|emb|CBJ82166.1| TadA, tRNA-specific adenosine deaminase [Xenorhabdus bovienii SS-2004] Length = 169 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 61/163 (37%), Gaps = 22/163 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAE 56 M D +M A+ + + V ++V + +I G T + HAE Sbjct: 1 MTEIYSDEYWMRRAMELAMQAQ--SQDEIPVGAVLVANNKIIAEGYNHPITEHDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL G E + T YVTLEPC CA ++ I+R+V D Sbjct: 59 IIALRRGGIELQNYRLLNTTLYVTLEPC------VMCAGAMVHSRIQRLVYGASDMKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKR 149 +G + L G+ I ++ E L + ++ E+ Sbjct: 113 AGSLIDILRHPGMNHQIEITAGVLAQECATMLSTFFKQRREQH 155 >gi|254827285|ref|ZP_05231972.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL N3-165] gi|258599666|gb|EEW12991.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL N3-165] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145 >gi|260945269|ref|XP_002616932.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720] gi|238848786|gb|EEQ38250.1| hypothetical protein CLUG_02376 [Clavispora lusitaniae ATCC 42720] Length = 590 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 10/135 (7%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY-GGCPHAEVQALEEAGEE 66 +FM AL +R G T T +V ++V DG V+ G + G HAE ALE+ E+ Sbjct: 442 RKFMELALENARK-CGETQTQFNVGAVLVLDGQVLSTGHSRELPGNTHAEQCALEKYFEK 500 Query: 67 ------ARGATAYVTLEPCS-HYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ-W 118 G Y T+EPCS + PC II I+ V V +PD V Q Sbjct: 501 TGQRNVPEGTEIYTTMEPCSLRLSGNLPCVDRIIATNIKTCYVGVVEPDTFVENNTGQAK 560 Query: 119 LSQKGIIVDRMMESE 133 L + G+ + E Sbjct: 561 LREAGVEYIHIPGYE 575 >gi|217967615|ref|YP_002353121.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724] gi|217336714|gb|ACK42507.1| CMP/dCMP deaminase zinc-binding [Dictyoglomus turgidum DSM 6724] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 17/121 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 SS D FM A++ ++ L V +IV +G ++GRG HAE+ Sbjct: 4 KFSSIDEYFMHEAIKEAKKA--LRKGEVPVGAVIVYNGQIVGRGYNLRESKKNPISHAEM 61 Query: 58 QALEEAGEEARG-----ATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+E+A ++ +G T YVTLEPC C I+ I R+V ++ + + Sbjct: 62 IAIEKAAKKLKGWRLCNCTLYVTLEPCIM------CFGAILNSRISRLVYGTENREEGFT 115 Query: 113 G 113 Sbjct: 116 Q 116 >gi|227891209|ref|ZP_04009014.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741] gi|227867083|gb|EEJ74504.1| nucleoside deaminase [Lactobacillus salivarius ATCC 11741] Length = 169 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 59/148 (39%), Gaps = 22/148 (14%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEAG 64 +FM AL ++ + + C+IVKDG +IGRG + HAE+ A+EEA Sbjct: 13 KFMKEALFEAKLAAKI--GEVPIGCVIVKDGKIIGRGHNLREHSQNATLHAEMLAIEEAN 70 Query: 65 E-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWL 119 E +VTLEPC P C+ II I V D G + L Sbjct: 71 ETVNSWRLVDTQLFVTLEPC------PMCSGAIINSRIPEVYYGASDSKAGTVGTLMNLL 124 Query: 120 S-----QKGIIVDRMMESEGKIFLHAYL 142 + + ++E+E L + Sbjct: 125 EDSRFNHQSFVEKGILENECASILKDFF 152 >gi|29376713|ref|NP_815867.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus faecalis V583] gi|227520261|ref|ZP_03950310.1| nucleoside deaminase [Enterococcus faecalis TX0104] gi|227555305|ref|ZP_03985352.1| nucleoside deaminase [Enterococcus faecalis HH22] gi|229549515|ref|ZP_04438240.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200] gi|256617220|ref|ZP_05474066.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC 4200] gi|256763008|ref|ZP_05503588.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3] gi|256853656|ref|ZP_05559021.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8] gi|256956593|ref|ZP_05560764.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5] gi|256963481|ref|ZP_05567652.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704] gi|257079519|ref|ZP_05573880.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1] gi|257084716|ref|ZP_05579077.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1] gi|257087338|ref|ZP_05581699.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6] gi|257090472|ref|ZP_05584833.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188] gi|294779058|ref|ZP_06744471.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis PC1.1] gi|307270381|ref|ZP_07551686.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX4248] gi|307272388|ref|ZP_07553644.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0855] gi|307277264|ref|ZP_07558368.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX2134] gi|307287809|ref|ZP_07567847.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0109] gi|307290876|ref|ZP_07570767.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0411] gi|312901462|ref|ZP_07760737.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0470] gi|312903780|ref|ZP_07762953.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0635] gi|312953348|ref|ZP_07772190.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0102] gi|29344177|gb|AAO81937.1| cytidine/deoxycytidylate deaminase family protein [Enterococcus faecalis V583] gi|227072340|gb|EEI10303.1| nucleoside deaminase [Enterococcus faecalis TX0104] gi|227175516|gb|EEI56488.1| nucleoside deaminase [Enterococcus faecalis HH22] gi|229305333|gb|EEN71329.1| nucleoside deaminase [Enterococcus faecalis ATCC 29200] gi|256596747|gb|EEU15923.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ATCC 4200] gi|256684259|gb|EEU23954.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T3] gi|256710599|gb|EEU25642.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T8] gi|256947089|gb|EEU63721.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis DS5] gi|256953977|gb|EEU70609.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis HIP11704] gi|256987549|gb|EEU74851.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis JH1] gi|256992746|gb|EEU80048.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis Fly1] gi|256995368|gb|EEU82670.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis D6] gi|256999284|gb|EEU85804.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis CH188] gi|294453888|gb|EFG22277.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis PC1.1] gi|306498076|gb|EFM67602.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0411] gi|306501197|gb|EFM70502.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0109] gi|306506194|gb|EFM75360.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX2134] gi|306510942|gb|EFM79956.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0855] gi|306513289|gb|EFM81916.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX4248] gi|310628736|gb|EFQ12019.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0102] gi|310632854|gb|EFQ16137.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0635] gi|311291451|gb|EFQ70007.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0470] gi|315025888|gb|EFT37820.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX2137] gi|315028203|gb|EFT40135.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX4000] gi|315035707|gb|EFT47639.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0027] gi|315149190|gb|EFT93206.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0012] gi|315154468|gb|EFT98484.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0031] gi|315157427|gb|EFU01444.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0312] gi|315161835|gb|EFU05852.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0645] gi|315164307|gb|EFU08324.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX1302] gi|315166488|gb|EFU10505.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX1341] gi|315171494|gb|EFU15511.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX1342] gi|315575193|gb|EFU87384.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0309B] gi|315578180|gb|EFU90371.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0630] gi|315582620|gb|EFU94811.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0309A] gi|323481270|gb|ADX80709.1| cytidine and deoxycytidylate deaminase family protein [Enterococcus faecalis 62] gi|327535599|gb|AEA94433.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis OG1RF] Length = 173 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATAHAEMYAIQEA 71 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +VTLEPC P C+ ++ I V DP +G + Sbjct: 72 CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E ++ L + + Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156 >gi|217966083|ref|YP_002351761.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23] gi|217335353|gb|ACK41147.1| tRNA-specific adenosine deaminase [Listeria monocytogenes HCC23] gi|307572307|emb|CAR85486.1| tRNA-specific adenosine deaminase, putative [Listeria monocytogenes L99] Length = 156 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 22/150 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 A FM AL + + + ++V DG +IGR T+ HAE+ A+++A Sbjct: 4 AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 62 CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L ++ Sbjct: 116 LQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145 >gi|297581254|ref|ZP_06943178.1| zinc-binding domain-containing protein [Vibrio cholerae RC385] gi|297534570|gb|EFH73407.1| zinc-binding domain-containing protein [Vibrio cholerae RC385] Length = 193 Score = 93.0 bits (230), Expect = 6e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 66/176 (37%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNGSITNHDATAHAEIE 81 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKALSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKDAERKN 191 >gi|262040295|ref|ZP_06013546.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259042404|gb|EEW43424.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 180 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 63/169 (37%), Gaps = 22/169 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 19 DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G + AT YVTLEPC CA ++ I R+V D +G + Sbjct: 77 GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 130 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G+ I + ++ L + + E++ + + + Sbjct: 131 VLHHPGMNHRVAISEGVLAESCSAMLSDFFRWRREEKKALKKAREQTGE 179 >gi|257082102|ref|ZP_05576463.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol] gi|257419759|ref|ZP_05596753.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11] gi|257422022|ref|ZP_05599012.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98] gi|256990132|gb|EEU77434.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis E1Sol] gi|257161587|gb|EEU91547.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis T11] gi|257163846|gb|EEU93806.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis X98] gi|315157050|gb|EFU01067.1| cytidine and deoxycytidylate deaminase zinc-binding region [Enterococcus faecalis TX0043] Length = 173 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRKGEIIGRGHNLREARQEATAHAEMYAIQEA 71 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +VTLEPC P C+ ++ I V DP +G + Sbjct: 72 CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E ++ L + + Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156 >gi|242796726|ref|XP_002482861.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces stipitatus ATCC 10500] gi|218719449|gb|EED18869.1| riboflavin biosynthesis protein Rib7, putative [Talaromyces stipitatus ATCC 10500] Length = 341 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 43/185 (23%), Positives = 73/185 (39%), Gaps = 35/185 (18%) Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLD--SKII----KTALLAPVIIVTENDDPVL 256 DD E+ R + H P II+DP + SKII + AP +I+ ++ P Sbjct: 146 DDEEMIIRKRQEKLHQPRPIIIDPKARWVPQETSKIIELVRQGRGKAPFVIIAKSTSPPQ 205 Query: 257 --ALAFRKKNINIIYCDCR---------------DLKKLLTILV-GRGVTSLLVEGGAAV 298 K I D D +L +L + S+++EGG ++ Sbjct: 206 HGRDLLEKYGGKFIALDTVASDINDENGETHRHFDWHDILHVLATKENIRSIMIEGGGSI 265 Query: 299 AHSFINS----RLVDSIILYRSQIVIGEGGI----PSPLEE---GYLEKNFMCVRRDYFG 347 +S ++ L+DS+I+ + +G+GG+ ++E V+ FG Sbjct: 266 INSLLSEQKFSGLIDSVIVTIAPTWLGQGGVVVSPKRRVDEHGYAIPASRLTDVKWYPFG 325 Query: 348 SDVCL 352 DV L Sbjct: 326 EDVVL 330 Score = 36.0 bits (82), Expect = 9.9, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 15/22 (68%) Query: 196 GIGTVLADDPELTCRLNGLQEH 217 G+GT +AD+P L CR+ G + Sbjct: 65 GVGTAIADNPGLNCRIEGAGGY 86 >gi|300311527|ref|YP_003775619.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae SmR1] gi|300074312|gb|ADJ63711.1| cytosine/adenosine deaminases protein [Herbaspirillum seropedicae SmR1] Length = 185 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 57/152 (37%), Gaps = 22/152 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60 D M AAL +R L V ++VKDG+VI G G HAE+ AL Sbjct: 16 EADLLHMRAALEQARHAWAL--GEVPVGAVVVKDGVVIATGFNQPIGKHDPTAHAEIMAL 73 Query: 61 EEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 A E G YVTLEPC C+ ++ + RVV DP G Sbjct: 74 RRAAEILGNYRLPGCELYVTLEPC------VMCSGAMMHARLARVVFGAADPKTGACGSV 127 Query: 116 LQW-----LSQKGIIVDRMMESEGKIFLHAYL 142 L L+ ++ +M E L + Sbjct: 128 LNLFEQDQLNHHTALLGGVMAEECGQLLKDFF 159 >gi|47095526|ref|ZP_00233135.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 1/2a F6854] gi|254899824|ref|ZP_05259748.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J0161] gi|254912971|ref|ZP_05262983.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J2818] gi|254937352|ref|ZP_05269049.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900] gi|255025258|ref|ZP_05297244.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL J2-003] gi|284800395|ref|YP_003412260.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578] gi|284993581|ref|YP_003415349.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923] gi|47016136|gb|EAL07060.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 1/2a F6854] gi|258609958|gb|EEW22566.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes F6900] gi|284055957|gb|ADB66898.1| hypothetical protein LM5578_0141 [Listeria monocytogenes 08-5578] gi|284059048|gb|ADB69987.1| hypothetical protein LM5923_0141 [Listeria monocytogenes 08-5923] gi|293590973|gb|EFF99307.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes J2818] Length = 156 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +MESE L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145 >gi|197285737|ref|YP_002151609.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320] gi|194683224|emb|CAR43904.1| tRNA-specific adenosine deaminase [Proteus mirabilis HI4320] Length = 176 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M D +M A+ + L V ++V + +I +G HAE Sbjct: 1 MNKIKDDIYWMHKAIEQAHKAQQL--GEIPVGAVLVAENKIIAKGWNHSIIDNDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL + G+ + AT Y+TLEPC CA I+ ++RVV D Sbjct: 59 IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G + L G+ I ++ E L + Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECAQLLSQFF 148 >gi|255527107|ref|ZP_05393995.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7] gi|296187896|ref|ZP_06856289.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium carboxidivorans P7] gi|255509209|gb|EET85561.1| CMP/dCMP deaminase zinc-binding [Clostridium carboxidivorans P7] gi|296047517|gb|EFG86958.1| cytidine and deoxycytidylate deaminase zinc-binding region [Clostridium carboxidivorans P7] Length = 145 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 17/121 (14%) Query: 10 FMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA-- 63 FM A++ + L V +IVKD I+I R T HAE+ A++EA Sbjct: 4 FMREAIKEAEKS--LVLGEVPVGVVIVKDNIIIARAHNLRETLQDTLAHAEILAIKEASQ 61 Query: 64 ---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 G + YVTLEPC P CA I++ I V + +P+ G + L Sbjct: 62 YTNNWRLSGCSMYVTLEPC------PMCAGAILQSRISNVYIGTFEPNTGACGSVINILQ 115 Query: 121 Q 121 Sbjct: 116 N 116 >gi|254786582|ref|YP_003074011.1| cytidine and deoxycytidylate deaminase family protein [Teredinibacter turnerae T7901] gi|237687430|gb|ACR14694.1| cytidine and deoxycytidylate deaminase family protein [Teredinibacter turnerae T7901] Length = 164 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 57/129 (44%), Gaps = 17/129 (13%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 +S D +M+ AL +R V ++V+DG +IGRG G HAE+ Sbjct: 1 MSLNDEHWMTEALVLAREAAAQ--GEVPVGAVLVQDGAIIGRGSNNPIGSCDASGHAEIC 58 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL +AG+ + AT YVT+EPC C I+ I RVV +P V Sbjct: 59 ALRDAGQRQKNYRLPNATLYVTIEPC------TMCLGAIVHARIARVVFGAPEPKAGVLE 112 Query: 114 RGLQWLSQK 122 + LS K Sbjct: 113 SNPELLSAK 121 >gi|291618438|ref|YP_003521180.1| TadA [Pantoea ananatis LMG 20103] gi|291153468|gb|ADD78052.1| TadA [Pantoea ananatis LMG 20103] Length = 171 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 38/169 (22%), Positives = 62/169 (36%), Gaps = 22/169 (13%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQAL 60 D +M AL ++ V ++V+ VIG G G HAE+ AL Sbjct: 11 EQDEYWMRRALTLAQRAW--EQGEVPVGAVLVQGDRVIGEGWNRPIGQHDPTAHAEIMAL 68 Query: 61 EEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 + G+ T YVTLEPC CA ++ I R+V D +G Sbjct: 69 RQGGKVLENYRLLNTTLYVTLEPCIM------CAGAMVHSRIGRLVYGAHDVKTGAAGSL 122 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 + L G+ + ++E E L + + +++ + S Sbjct: 123 IDILGHPGMNHQVALHQGVLEEECAAMLSDFFRMRRQQQKALRQAQRES 171 >gi|238896010|ref|YP_002920746.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae NTUH-K2044] gi|238548328|dbj|BAH64679.1| tRNA-specific adenosine deaminase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 180 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 39/169 (23%), Positives = 64/169 (37%), Gaps = 22/169 (13%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 19 DEYWMRHALTLAKRAW--EEGEVPVGAVLVHNNQVIGEGWNRPIGRHDPTAHAEIMALRQ 76 Query: 63 AGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G + AT YVTLEPC CA ++ I R+V D +G + Sbjct: 77 GGLVLQNYRLIDATLYVTLEPC------VMCAGAMVHSRIARLVFGARDAKTGAAGSLMD 130 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G+ I + ++ L + + E++ + A + + Sbjct: 131 VLHHPGMNHRVEISEGVLAESCSAMLSDFFRWRREEKKALKKARAQTGE 179 >gi|229542244|ref|ZP_04431304.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1] gi|229326664|gb|EEN92339.1| CMP/dCMP deaminase zinc-binding [Bacillus coagulans 36D1] Length = 169 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 22/154 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 + + D +M A++ + L + +IV D VI T HAE+ Sbjct: 1 MENRDEYYMRLAIQEAVKAQRLREV--PIGAVIVLDEKVIAAAHNLRETTQRAAAHAELL 58 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 A+E+A E A YVTLEPC P C+ +++ I+RVV DP +G Sbjct: 59 AIEKACEVTGSWRLENAELYVTLEPC------PMCSGAVLQSRIKRVVYGAKDPKAGCAG 112 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYL 142 + L + +V ++E+E L ++ Sbjct: 113 SLMNLLEDGRFNHRSEVVSGVLETECGELLRSFF 146 >gi|50085441|ref|YP_046951.1| putative deaminase [Acinetobacter sp. ADP1] gi|49531417|emb|CAG69129.1| putative deaminase [Acinetobacter sp. ADP1] Length = 174 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 66/179 (36%), Gaps = 25/179 (13%) Query: 1 MPVSSF--DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPH 54 M +S D +M A + V +IV VIG G A H Sbjct: 1 MSLSDTFNDEYWMQLAYEQAVRAAEHNEV--PVGAVIVSQNKVIGSGYNAPITLNDPTAH 58 Query: 55 AEVQALEEAGEE------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPD 108 AE++A+ A E AT YVTLEPC C ++ I RVV +P Sbjct: 59 AEIRAIRMACESVKNYRLPEDATLYVTLEPC------TMCVGALVHARIHRVVFATTEPK 112 Query: 109 VRVSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDN 162 Q L + K +I M+++ L + ++ E++ + + + +N Sbjct: 113 AGSLVSARQLLNMGYYNHKFLIEHGCMQAQCSKQLSDFFRKRREQKRELRQQYIATSEN 171 >gi|224498434|ref|ZP_03666783.1| hypothetical protein LmonF1_01565 [Listeria monocytogenes Finland 1988] Length = 156 Score = 93.0 bits (230), Expect = 7e-17, Method: Composition-based stats. Identities = 41/152 (26%), Positives = 61/152 (40%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +MESE L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMESESSEMLKSFFQ 145 >gi|81427949|ref|YP_394948.1| putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K] gi|78609590|emb|CAI54636.1| Putative cytidine deaminase [Lactobacillus sakei subsp. sakei 23K] Length = 172 Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 62/157 (39%), Gaps = 27/157 (17%) Query: 2 PVSSFDARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHA 55 + D ++M A+ + G + +IVKDG +IGRG A HA Sbjct: 4 TQTEID-QWMQVAIDEANQARIIGEV----PIGAVIVKDGQIIGRGHNIREHAQDATLHA 58 Query: 56 EVQALEEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 E+ A++EA +VTLEPC P CA II I V DP Sbjct: 59 EIIAIQEACMVEKSWRLEDTAIFVTLEPC------PMCAGAIINSRIPNVYFGASDPKAG 112 Query: 111 VSGRGLQWL-----SQKGIIVDRMMESEGKIFLHAYL 142 V+G + L + + +V + E+E L + Sbjct: 113 VTGTLMNLLTDKRFNHQATVVAGVREAECAALLQTFF 149 >gi|229525486|ref|ZP_04414891.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis VL426] gi|229339067|gb|EEO04084.1| tRNA-specific adenosine-34 deaminase [Vibrio cholerae bv. albensis VL426] Length = 193 Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 67/176 (38%), Gaps = 22/176 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S+ D +FM + V ++V+DG +I G T + HAE++ Sbjct: 24 FSAQDEQFMRR--AIALAAQAEAQGEVPVGAVLVRDGEIIAEGWNSSITNHDATAHAEIE 81 Query: 59 ALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 + +AG+ T YVTLEPC P CA ++ ++R+V D +G Sbjct: 82 VIRKAGKVLSNYRLLDTTLYVTLEPC------PMCAGALLHSRVKRIVYGAPDLKAGAAG 135 Query: 114 RGLQWLS-----QKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMI 164 + S + ++E E + L A+ R+ ++ + + Sbjct: 136 TVMDLFSSQAAYHYATVEKGLLEEECRAQLQAFFQRRRKEIKAKRDAERKNAERKN 191 >gi|46908898|ref|YP_015287.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|254851976|ref|ZP_05241324.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL R2-503] gi|254931009|ref|ZP_05264368.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262] gi|254994111|ref|ZP_05276301.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL J2-064] gi|300763522|ref|ZP_07073520.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL N1-017] gi|46882171|gb|AAT05464.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes serotype 4b str. F2365] gi|258605274|gb|EEW17882.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL R2-503] gi|293582555|gb|EFF94587.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes HPB2262] gi|300515799|gb|EFK42848.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes FSL N1-017] gi|328469576|gb|EGF40517.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes 220] gi|332313149|gb|EGJ26244.1| tRNA-specific adenosine deaminase [Listeria monocytogenes str. Scott A] Length = 156 Score = 92.6 bits (229), Expect = 7e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLKSFFQ 145 >gi|315284032|ref|ZP_07872011.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120] gi|313612324|gb|EFR86487.1| tRNA-specific adenosine deaminase [Listeria marthii FSL S4-120] Length = 156 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 22/150 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEEA 63 A FM AL + + + ++V DG +IGR T+ HAE+ A+++A Sbjct: 4 AFFMQQALEEAEKAREI--GEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDA 61 Query: 64 GE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 62 CKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNL 115 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME+E L ++ Sbjct: 116 LQDDRFNHTCEVEAGLMEAESSEMLKSFFQ 145 >gi|309775004|ref|ZP_07670019.1| cytidine/deoxycytidylate deaminase family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308917222|gb|EFP62947.1| cytidine/deoxycytidylate deaminase family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 162 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 22/149 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 +M AA++ + + C+IVKD +I RG HAE+ A+++A Sbjct: 14 EDYMRAAIKEAVKA--NMKDEVPIGCVIVKDDKIIARGHNLRESKQQSINHAEIIAIQKA 71 Query: 64 GEE-----ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 ++ YVTLEPC CA I++ IR V+ DP + Sbjct: 72 CKKIGSWRLEDCDLYVTLEPCCM------CAGAILQSRIRTVIYGASDPKGGSIDSTMHM 125 Query: 119 LSQKGI-----IVDRMMESEGKIFLHAYL 142 Q G + +++ E L + Sbjct: 126 YEQPGFNHYPCVYSGVLQEECSQLLKNFF 154 >gi|290978118|ref|XP_002671783.1| predicted protein [Naegleria gruberi] gi|284085355|gb|EFC39039.1| predicted protein [Naegleria gruberi] Length = 214 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 54/163 (33%), Gaps = 23/163 (14%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 + D +M AL ++ L V C+IV D ++GRG HAE+ Sbjct: 13 KFTEQDEIYMREALNMAQKA--LEELEVPVGCVIVHDNKIVGRGYNKTNQKKNATRHAEL 70 Query: 58 QALEEAGEEA-----------RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDD 106 +A +E E + T YVT+EPC CA +I I RVV + Sbjct: 71 EAFDEITENYSEELNNNVNFFKECTLYVTVEPC------VMCASALILLKIGRVVCGCMN 124 Query: 107 PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKR 149 G L ++ + + + Sbjct: 125 ERFGGCGSVLNIHQSCYNSLNHNHHHDQHGNNNQLNWKYECVH 167 >gi|308187798|ref|YP_003931929.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1] gi|308058308|gb|ADO10480.1| tRNA-specific adenosine deaminase [Pantoea vagans C9-1] Length = 163 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 61/170 (35%), Gaps = 21/170 (12%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQ 58 + D +M AL +R V ++V++ VIG G G HAE+ Sbjct: 1 MKQQDEYWMRHALSLARRAW--EQGEVPVGAVLVQNDRVIGEGWNRPIGQHDPTAHAEIM 58 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 AL + G+ T YVTLEPC CA ++ I R+V D +G Sbjct: 59 ALRQGGKVLENYRLLDTTLYVTLEPC------VMCAGAMVHSRISRLVYGAHDIKSGAAG 112 Query: 114 RGLQWLSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVS 159 L L G + + + +E + + R ++ + Sbjct: 113 SLLDVLGHPGMNHQVELHSGVLAEECAAMLSDFFRMRREQKKALRQAQRQ 162 >gi|326560079|gb|EGE10469.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 46P47B1] gi|326561665|gb|EGE12002.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 103P14B1] gi|326565806|gb|EGE15968.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC1] gi|326570459|gb|EGE20499.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis BC8] gi|326573436|gb|EGE23404.1| tRNA-specific adenosine deaminase [Moraxella catarrhalis 101P30B1] Length = 181 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/148 (24%), Positives = 54/148 (36%), Gaps = 31/148 (20%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQ 58 S D M+ AL ++ V ++V +G ++G G T HAE+ Sbjct: 21 WSMRDVEMMNRALEIAKQGAKF--GEIPVGAVVVYEGRILGEGYNCPITTQDPTAHAEIV 78 Query: 59 ALEEAGE------EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 A+ A E +G YVTLEPC C +I I RVV +P Sbjct: 79 AVRRACETLNNYRLPKGCILYVTLEPC------TMCFGALIHARISRVVFGAFEPK---- 128 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHA 140 G++V ++ E + H Sbjct: 129 ---------AGVVVSQLKLPEQVFYNHH 147 >gi|188533151|ref|YP_001906948.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99] gi|188028193|emb|CAO96051.1| tRNA-specific adenosine deaminase [Erwinia tasmaniensis Et1/99] Length = 186 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 22/150 (14%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEE 62 D +M AL+ +R V ++V DG VIG G G HAE+ AL + Sbjct: 26 DEYWMRHALQLARRAWN--EGEVPVGAVLVLDGQVIGEGWNRPIGHHDPTAHAEMMALRQ 83 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 G+ T YVTLEPC CA ++ + R+V D +G L Sbjct: 84 GGKVIENYRLMDTTLYVTLEPC------VMCAGAMVHGRVGRLVYGARDAKTGAAGSLLD 137 Query: 118 WLSQKGI-----IVDRMMESEGKIFLHAYL 142 L G+ + ++ E L + Sbjct: 138 VLGHPGMNHRVRVDCGVLADECAAMLSEFF 167 >gi|323978411|gb|EGB73496.1| cytidine and deoxycytidylate deaminase zinc-binding protein [Escherichia coli TW10509] Length = 167 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 9 EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 66 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA +I I RVV D +G + Sbjct: 67 GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRISRVVFGARDAKTGAAGSLMDV 120 Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G + + + ++ L + R + K S D Sbjct: 121 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 167 >gi|126175184|ref|YP_001051333.1| CMP/dCMP deaminase zinc-binding [Shewanella baltica OS155] gi|125998389|gb|ABN62464.1| tRNA-adenosine deaminase [Shewanella baltica OS155] Length = 175 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 38/156 (24%), Positives = 55/156 (35%), Gaps = 22/156 (14%) Query: 3 VSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQ 58 S D ++M A+ + V ++VKDG I G + HAE+ Sbjct: 9 QSEQDEQWMQVAMLMAEKAE--AEGEVPVGAVLVKDGQQIATGYNLSISQHDPSAHAEIL 66 Query: 59 ALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 L EAG AT YVTLEPC+ CA ++ I RVV D +G Sbjct: 67 CLREAGRLVENYRLLDATLYVTLEPCAM------CAGAMVHSRIARVVFGARDEKTGAAG 120 Query: 114 RGLQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 + L + ++ L + R Sbjct: 121 TVVNLLQHPAFNHQVEVTSGVLADACSAQLSRFFKR 156 >gi|320176139|gb|EFW51206.1| tRNA-specific adenosine-34 deaminase [Shigella dysenteriae CDC 74-1112] Length = 178 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 59/167 (35%), Gaps = 21/167 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 20 EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA + I RVV D +G + Sbjct: 78 GLVMQNYRLIDATLYVTLEPC------VMCAGAMTHSRIGRVVFGARDAKTGAAGSLMDV 131 Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G + + + ++ L + R + K S D Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQSSTD 178 >gi|257416518|ref|ZP_05593512.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis AR01/DG] gi|257158346|gb|EEU88306.1| cytidine/deoxycytidylate deaminase [Enterococcus faecalis ARO1/DG] Length = 173 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 22/151 (14%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEVQALEEA 63 FM A+ ++ GL + +IV+ G +IGRG HAE+ A++EA Sbjct: 14 EFFMREAIAEAKKAEGLAEV--PIGAVIVRQGEIIGRGHNLREARQEATSHAEMYAIQEA 71 Query: 64 -----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 +VTLEPC P C+ ++ I V DP +G + Sbjct: 72 CRGIENWRLEETQLFVTLEPC------PMCSGAMLLARIPEVYYGATDPKAGTAGTLMNL 125 Query: 119 LS-----QKGIIVDRMMESEGKIFLHAYLTR 144 L + ++E E ++ L + + Sbjct: 126 LEDERFNHVAYVEAGVLEEECRLLLVQFFKK 156 >gi|226328060|ref|ZP_03803578.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198] gi|225203764|gb|EEG86118.1| hypothetical protein PROPEN_01951 [Proteus penneri ATCC 35198] Length = 176 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 58/156 (37%), Gaps = 22/156 (14%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAY----GGCPHAE 56 M D +M A+ + + V ++V D +I +G HAE Sbjct: 1 MNKVKDDIYWMHKAIEQAHKAQEI--GEIPVGAVLVVDNKIIAKGWNHSIIDNDPTAHAE 58 Query: 57 VQALEEAGEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 + AL + G+ + AT Y+TLEPC CA I+ ++RVV D Sbjct: 59 IMALRKGGKHLQNYRLLDATLYITLEPC------VMCAGAIVHSRVKRVVYGASDLKTGA 112 Query: 112 SGRGLQWLSQKGI-----IVDRMMESEGKIFLHAYL 142 +G + L G+ I ++ E L + Sbjct: 113 AGSFIDILQHPGMNHKVEITSGVLGEECSQLLSQFF 148 >gi|288942407|ref|YP_003444647.1| CMP/dCMP deaminase protein [Allochromatium vinosum DSM 180] gi|288897779|gb|ADC63615.1| CMP/dCMP deaminase zinc-binding protein [Allochromatium vinosum DSM 180] Length = 166 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 52/131 (39%), Gaps = 17/131 (12%) Query: 2 PVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVT----AYGGCPHAEV 57 + D +M AL +R V ++V++G ++G G + HAE+ Sbjct: 4 TFADADVHWMRHALELAR--CAAEEGEVPVGAVLVREGEILGEGWNRPIIRHDPSAHAEI 61 Query: 58 QALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 QAL +AG G+ YVTLEPC CA I+ + +V+ DP Sbjct: 62 QALRDAGRRVGNYRLPGSILYVTLEPC------VMCAGAIVHARVAQVIYGAPDPKAGAC 115 Query: 113 GRGLQWLSQKG 123 G L G Sbjct: 116 GSVFDLLPSDG 126 >gi|74313082|ref|YP_311501.1| tRNA-specific adenosine deaminase [Shigella sonnei Ss046] gi|73856559|gb|AAZ89266.1| putative deaminase [Shigella sonnei Ss046] gi|323169455|gb|EFZ55128.1| tRNA-specific adenosine deaminase [Shigella sonnei 53G] Length = 178 Score = 92.6 bits (229), Expect = 8e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 20 EYWMRHALTLAKRAWDERE--VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77 Query: 64 GEEAR-----GATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQW 118 G + AT YVTLEPC CA +I I RVV D +G + Sbjct: 78 GLVMQNYRLIDATLYVTLEPC------VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDV 131 Query: 119 LSQKG----IIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 L G + + + ++ L + R + K S D Sbjct: 132 LHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIKAQKKAQPSTD 178 >gi|254479893|ref|ZP_05093141.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [marine gamma proteobacterium HTCC2148] gi|214039455|gb|EEB80114.1| Cytidine and deoxycytidylate deaminase zinc-binding region domain protein [marine gamma proteobacterium HTCC2148] Length = 153 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 17/130 (13%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA----YGGCPHAE 56 M ++ ++M AL + G P + +IVKDG ++G G + HAE Sbjct: 1 MTSTAEHEQWMRRALALADRA-GNEGEVP-IGAVIVKDGQLLGEGWNSVIAFKDPTAHAE 58 Query: 57 VQALEEAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 V A+ +A + G+T YVTLEPC CA +I + +V +P V Sbjct: 59 VVAMRDAAQMTGNYRLPGSTVYVTLEPC------TMCAGAMIHARVAELVFAAKEPKAGV 112 Query: 112 SGRGLQWLSQ 121 L + Sbjct: 113 VCSTCSLLDE 122 >gi|257056391|ref|YP_003134223.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora viridis DSM 43017] gi|256586263|gb|ACU97396.1| pyrimidine reductase, riboflavin biosynthesis [Saccharomonospora viridis DSM 43017] Length = 258 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 84/206 (40%), Gaps = 19/206 (9%) Query: 141 YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTV 200 Y R + + S D + ++ + ++ K L R +D ILVG GT Sbjct: 27 YDYPPDLARPWVQVNFVSSADGAVSVSDRSA-GLSHPADKRVFGLGRDLADVILVGAGTA 85 Query: 201 LADD---------PELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEN 251 A+ R GL E P+ ++ L+ D ++ ++ P+++ T+ Sbjct: 86 RAERYRGVKAHELRLERRRRLGLSELPPIAVV-TGRCDLTPDDPLVTDTIVPPLVLTTQR 144 Query: 252 DDPVLALAFRKKNINIIYC--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309 A + ++++ + D + L L RG+ + EGG + + + + LVD Sbjct: 145 APRHRKDALTEAGVDVVEAGEETVDPRLALAALDERGLRRVDCEGGPRLFAALVAADLVD 204 Query: 310 SIILYRSQIVIGEG------GIPSPL 329 + L + ++ G G G+PSPL Sbjct: 205 QLCLTIAPLLAGAGADRIVTGVPSPL 230 >gi|56418551|ref|YP_145869.1| hypothetical protein GK0016 [Geobacillus kaustophilus HTA426] gi|261417515|ref|YP_003251197.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61] gi|297528391|ref|YP_003669666.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3] gi|319765173|ref|YP_004130674.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52] gi|56378393|dbj|BAD74301.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426] gi|261373972|gb|ACX76715.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC61] gi|297251643|gb|ADI25089.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. C56-T3] gi|317110039|gb|ADU92531.1| CMP/dCMP deaminase zinc-binding protein [Geobacillus sp. Y412MC52] Length = 165 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 41/154 (26%), Positives = 62/154 (40%), Gaps = 22/154 (14%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQAL 60 + D +M A+ ++ + + +IV+DG VI R T HAE+ A+ Sbjct: 2 NTDEYYMRLAMEEAKKAEQI--GEVPIGAVIVQDGRVIARAHNLRETEQRAIAHAEILAI 59 Query: 61 EEA-----GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRG 115 +EA AT YVTLEPC+ CA I+ I RVV DP +G Sbjct: 60 DEACRATGSWRLERATLYVTLEPCAM------CAGAIVLSRIERVVFGAFDPKGGCAGTL 113 Query: 116 LQWLSQKGI-----IVDRMMESEGKIFLHAYLTR 144 + L + +V ++ E L + R Sbjct: 114 MNLLQESRFNHQVKVVSGVLADECGSLLSQFFRR 147 >gi|47092339|ref|ZP_00230130.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 4b H7858] gi|226225270|ref|YP_002759377.1| hypothetical protein Lm4b_02693 [Listeria monocytogenes Clip81459] gi|254824916|ref|ZP_05229917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J1-194] gi|255520888|ref|ZP_05388125.1| hypothetical protein LmonocFSL_06656 [Listeria monocytogenes FSL J1-175] gi|47019318|gb|EAL10060.1| cytidine/deoxycytidylate deaminase family protein [Listeria monocytogenes str. 4b H7858] gi|225877732|emb|CAS06447.1| Conserved hypothetical proteins [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|293594156|gb|EFG01917.1| cytidine/deoxycytidylate deaminase [Listeria monocytogenes FSL J1-194] gi|328468199|gb|EGF39205.1| hypothetical protein LM1816_02662 [Listeria monocytogenes 1816] Length = 156 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 26/152 (17%) Query: 8 ARFMSAALRFSRWHV--GLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALE 61 A FM AL + G + ++V DG +IGR T+ HAE+ A++ Sbjct: 4 AFFMQQALEEAEKARDIGEV----PIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQ 59 Query: 62 EAGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGL 116 +A + GA YVTLEPC P C+ I+ I +V DP +G + Sbjct: 60 DACKHQNSWRLSGAELYVTLEPC------PMCSGAILLSRIEKVYYGAKDPKAGTAGSLM 113 Query: 117 QWLS-----QKGIIVDRMMESEGKIFLHAYLT 143 L + +ME E L ++ Sbjct: 114 NLLQDDRFNHTCEVEAGLMEKESSEMLRSFFQ 145 >gi|24113886|ref|NP_708396.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 301] gi|30063946|ref|NP_838117.1| tRNA-specific adenosine deaminase [Shigella flexneri 2a str. 2457T] gi|82545011|ref|YP_408958.1| tRNA-specific adenosine deaminase [Shigella boydii Sb227] gi|89109365|ref|AP_003145.1| tRNA-specific adenosine deaminase [Escherichia coli str. K-12 substr. W3110] gi|157162036|ref|YP_001459354.1| tRNA-specific adenosine deaminase [Escherichia coli HS] gi|187730453|ref|YP_001881338.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94] gi|188496019|ref|ZP_03003289.1| tRNA-specific adenosine deaminase [Escherichia coli 53638] gi|209920038|ref|YP_002294122.1| tRNA-specific adenosine deaminase [Escherichia coli SE11] gi|218547914|ref|YP_002381705.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 35469] gi|218555084|ref|YP_002387997.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1] gi|218696186|ref|YP_002403853.1| tRNA-specific adenosine deaminase [Escherichia coli 55989] gi|254162534|ref|YP_003045642.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606] gi|256017292|ref|ZP_05431157.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|293410974|ref|ZP_06654550.1| tRNA-specific adenosine deaminase [Escherichia coli B354] gi|300817664|ref|ZP_07097879.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 107-1] gi|300820763|ref|ZP_07100913.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 119-7] gi|300904258|ref|ZP_07122117.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 84-1] gi|300920727|ref|ZP_07137133.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 115-1] gi|300927064|ref|ZP_07142816.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 182-1] gi|300927685|ref|ZP_07143253.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 187-1] gi|300951723|ref|ZP_07165542.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 116-1] gi|300958800|ref|ZP_07170912.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 175-1] gi|301022068|ref|ZP_07185995.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 196-1] gi|301024846|ref|ZP_07188483.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 69-1] gi|301302925|ref|ZP_07209053.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 124-1] gi|301330339|ref|ZP_07222986.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 78-1] gi|301648323|ref|ZP_07248063.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 146-1] gi|312973195|ref|ZP_07787367.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70] gi|331643182|ref|ZP_08344317.1| tRNA-specific adenosine deaminase [Escherichia coli H736] gi|331664126|ref|ZP_08365036.1| tRNA-specific adenosine deaminase [Escherichia coli TA143] gi|331669308|ref|ZP_08370156.1| tRNA-specific adenosine deaminase [Escherichia coli TA271] gi|331678554|ref|ZP_08379229.1| tRNA-specific adenosine deaminase [Escherichia coli H591] gi|331684208|ref|ZP_08384804.1| tRNA-specific adenosine deaminase [Escherichia coli H299] gi|332278286|ref|ZP_08390699.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|296183|emb|CAA51064.1| unnamed protein product [Escherichia coli] gi|987637|dbj|BAA10909.1| YFHC-ECOLI protein [Escherichia coli K-12] gi|1033148|gb|AAA79821.1| alternate name yfhC; orf178 of GenBank Accession Number X72336 [Escherichia coli str. K-12 substr. MG1655] gi|24052985|gb|AAN44103.1| putative deaminase [Shigella flexneri 2a str. 301] gi|30042202|gb|AAP17927.1| putative deaminase [Shigella flexneri 2a str. 2457T] gi|81246422|gb|ABB67130.1| putative deaminase [Shigella boydii Sb227] gi|85675450|dbj|BAE76735.1| tRNA-specific adenosine deaminase [Escherichia coli str. K12 substr. W3110] gi|157067716|gb|ABV06971.1| tRNA-specific adenosine deaminase [Escherichia coli HS] gi|187427445|gb|ACD06719.1| tRNA-specific adenosine deaminase [Shigella boydii CDC 3083-94] gi|188491218|gb|EDU66321.1| tRNA-specific adenosine deaminase [Escherichia coli 53638] gi|209913297|dbj|BAG78371.1| putative deaminase [Escherichia coli SE11] gi|218352918|emb|CAU98717.1| tRNA-specific adenosine deaminase [Escherichia coli 55989] gi|218355455|emb|CAQ88064.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ATCC 35469] gi|218361852|emb|CAQ99452.1| tRNA-specific adenosine deaminase [Escherichia coli IAI1] gi|253974435|gb|ACT40106.1| tRNA-specific adenosine deaminase [Escherichia coli B str. REL606] gi|253978602|gb|ACT44272.1| tRNA-specific adenosine deaminase [Escherichia coli BL21(DE3)] gi|281601959|gb|ADA74943.1| tRNA-specific adenosine deaminase [Shigella flexneri 2002017] gi|291471442|gb|EFF13926.1| tRNA-specific adenosine deaminase [Escherichia coli B354] gi|299881373|gb|EFI89584.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 196-1] gi|300314548|gb|EFJ64332.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 175-1] gi|300396377|gb|EFJ79915.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 69-1] gi|300403791|gb|EFJ87329.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 84-1] gi|300412298|gb|EFJ95608.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 115-1] gi|300416948|gb|EFK00259.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 182-1] gi|300449007|gb|EFK12627.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 116-1] gi|300464238|gb|EFK27731.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 187-1] gi|300526516|gb|EFK47585.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 119-7] gi|300529652|gb|EFK50714.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 107-1] gi|300841860|gb|EFK69620.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 124-1] gi|300843673|gb|EFK71433.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 78-1] gi|301073599|gb|EFK88405.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 146-1] gi|309702891|emb|CBJ02222.1| tRNA-specific adenosine deaminase [Escherichia coli ETEC H10407] gi|310331790|gb|EFP99025.1| tRNA-specific adenosine deaminase [Escherichia coli 1827-70] gi|315137183|dbj|BAJ44342.1| tRNA-specific adenosine deaminase [Escherichia coli DH1] gi|315256586|gb|EFU36554.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 85-1] gi|315615821|gb|EFU96453.1| tRNA-specific adenosine deaminase [Escherichia coli 3431] gi|320196395|gb|EFW71019.1| tRNA-specific adenosine-34 deaminase [Escherichia coli WV_060327] gi|323156217|gb|EFZ42376.1| tRNA-specific adenosine deaminase [Escherichia coli EPECa14] gi|323170158|gb|EFZ55811.1| tRNA-specific adenosine deaminase [Escherichia coli LT-68] gi|323177311|gb|EFZ62899.1| tRNA-specific adenosine deaminase [Escherichia coli 1180] gi|323184561|gb|EFZ69935.1| tRNA-specific adenosine deaminase [Escherichia coli 1357] gi|324020017|gb|EGB89236.1| cytidine and deoxycytidylate deaminase zinc-binding region [Escherichia coli MS 117-3] gi|325496361|gb|EGC94220.1| tRNA-specific adenosine deaminase [Escherichia fergusonii ECD227] gi|331039980|gb|EGI12200.1| tRNA-specific adenosine deaminase [Escherichia coli H736] gi|331059925|gb|EGI31902.1| tRNA-specific adenosine deaminase [Escherichia coli TA143] gi|331064502|gb|EGI36413.1| tRNA-specific adenosine deaminase [Escherichia coli TA271] gi|331075014|gb|EGI46334.1| tRNA-specific adenosine deaminase [Escherichia coli H591] gi|331079160|gb|EGI50362.1| tRNA-specific adenosine deaminase [Escherichia coli H299] gi|332100638|gb|EGJ03984.1| tRNA-specific adenosine deaminase [Shigella sp. D9] gi|333000545|gb|EGK20124.1| tRNA-specific adenosine deaminase [Shigella flexneri VA-6] Length = 178 Score = 92.6 bits (229), Expect = 9e-17, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 60/167 (35%), Gaps = 21/167 (12%) Query: 8 ARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGG----CPHAEVQALEEA 63 +M AL ++ V ++V + VIG G G HAE+ AL + Sbjct: 20 EYWMRHALTLAKRAWDEREV--PVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQG 77 Query: 64 GEEAR-----GATAYVT