RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
(364 letters)
>gnl|CDD|161819 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD. This
model describes the ribD protein as found in Escherichia
coli. The N-terminal domain includes the conserved
zinc-binding site region captured in the model
dCMP_cyt_deam and shared by proteins such as cytosine
deaminase, mammalian apolipoprotein B mRNA editing
protein, blasticidin-S deaminase, and Bacillus subtilis
competence protein comEB. The C-terminal domain is
homologous to the full length of yeast HTP reductase, a
protein required for riboflavin biosynthesis. A number
of archaeal proteins believed related to riboflavin
biosynthesis contain only this C-terminal domain and are
not found as full-length matches to this model.
Length = 344
Score = 271 bits (695), Expect = 2e-73
Identities = 140/348 (40%), Positives = 199/348 (57%), Gaps = 11/348 (3%)
Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGA 70
M+ AL ++ G T NP V C+IVK+G ++G G G PHAEV AL +AGE A+GA
Sbjct: 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKGA 60
Query: 71 TAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIVDR-M 129
TAYVTLEPCSH GR+PPCA+ IIE GI++VVV + DP+ V+GRG + L Q GI V +
Sbjct: 61 TAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGI 120
Query: 130 MESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
++ E + +L R ++ LK+A S D I A S IT ++ LRAQ
Sbjct: 121 LKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIATASGESKWITSEAARTDAQQLRAQ 180
Query: 190 SDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVT 249
SDAILVG GTV AD+P LT RL+ E P+R++LD ++ +K+I +AP I T
Sbjct: 181 SDAILVGGGTVKADNPALTARLDEATEQ-PLRVVLDTQLRIPEFAKLIPQ--IAPTWIFT 237
Query: 250 ENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVD 309
D L + +NI + +++++T L RG+ S+LVEGG + SF++ LVD
Sbjct: 238 TARDKKKRLEAFE--VNIFPLEKVTIREVMTQLGKRGINSVLVEGGPNLLGSFLDEGLVD 295
Query: 310 SIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCL 352
+I+Y + ++G P E +K NF + + G D+ L
Sbjct: 296 ELIIYIAPKLLGGTHAPGLCSEPGFQKMADALNFKFLEINQIGPDILL 343
>gnl|CDD|182729 PRK10786, ribD, bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase; Provisional.
Length = 367
Score = 220 bits (563), Expect = 4e-58
Identities = 133/369 (36%), Positives = 191/369 (51%), Gaps = 32/369 (8%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL AGE+
Sbjct: 3 DEFYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEK 62
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Q GI V
Sbjct: 63 AKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDV 122
Query: 127 DR-MMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
+M SE + +L R +I LK+ S D MA S IT ++ V
Sbjct: 123 SHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQR 182
Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHFKLSLDS 234
LRAQS AIL TVLADDP LT R + L + P+RI++D +++ +
Sbjct: 183 LRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPEH 242
Query: 235 KIIKTALLAPVIIVTENDDP----VLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSL 290
+I++ + E+ V L + N ++ DL L+ L + + S+
Sbjct: 243 RIVQQPGETWLARTQEDSREWPETVRTLLLPEHNGHL------DLVVLMMQLGKQQINSI 296
Query: 291 LVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-------NFMCVRR 343
VE G +A + + + LVD +I+Y + ++G G LEK F +R
Sbjct: 297 WVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPG-LEKLADAPQFKFSEIR- 354
Query: 344 DYFGSDVCL 352
+ G DVCL
Sbjct: 355 -HVGPDVCL 362
>gnl|CDD|178404 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine
deaminase.
Length = 380
Score = 167 bits (424), Expect = 5e-42
Identities = 92/296 (31%), Positives = 159/296 (53%), Gaps = 13/296 (4%)
Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
D+ +M + +R +G TS NP V C+IVKDG ++G G G PHAEV AL +AG+
Sbjct: 32 DSFYMRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDAGDL 91
Query: 67 ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGIIV 126
A ATAYV+LEPC+HYGR+PPC + +I+ ++RVVV + DP+ V+ +G++ L GI V
Sbjct: 92 AENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEV 151
Query: 127 DRMMESE-GKIFLHAYLTRQVEKRSHITLKIAVSQDN-MIGMAGCGSVPITGFISKNQVH 184
+E E + A++ R + + +TL+ ++S + ++ G G+ G+ S+
Sbjct: 152 TVGVEEELCRKLNEAFIHRMLTGKPFVTLRYSMSMNGCLLNQIGEGADDAGGYYSQ---- 207
Query: 185 LLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAP 244
L + DA+++ + DP + G ++ P+RII+ L ++ A
Sbjct: 208 -LLQEYDAVILS-SALADADPLPLSQEAGAKQ--PLRIIIARSESSPLQIPSLREESAAK 263
Query: 245 VIIVTENDDPVLALA-FRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVA 299
V+++ D A R+K + ++ + +L +L + RG+ S+L++ V
Sbjct: 264 VLVLA--DKESSAEPVLRRKGVEVVVLNQINLDSILDLCYQRGLCSVLLDLRGNVG 317
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal
domain. Eubacterial riboflavin-specific deaminases have
a zinc-binding domain recognized by the dCMP_cyt_deam
model toward the N-terminus and this domain toward the
C-terminus. Yeast HTP reductase, a
riboflavin-biosynthetic enzyme, and several archaeal
proteins believed related to riboflavin biosynthesis
consist only of this domain and lack the dCMP_cyt_deam
domain.
Length = 216
Score = 137 bits (348), Expect = 3e-33
Identities = 70/216 (32%), Positives = 108/216 (50%), Gaps = 11/216 (5%)
Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
R ++ LK A+S D I A S IT ++ VH LRAQSDAILVG GTVLADDP L
Sbjct: 1 GRPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRL 60
Query: 208 TCRLNGLQE-HSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTEND-DPVLALAFRKKNI 265
T R L E +P+R++LD ++ ++++ AP + T D +
Sbjct: 61 TVRWVELDELRNPVRVVLDSQLRVPPTARLLNDD--APTWVATTEPADEEKVKELEDFGV 118
Query: 266 NIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
++ + + DLKKL+ IL G+ S++VEGG + S + LVD +I+Y + ++G
Sbjct: 119 EVLVLETKRVDLKKLMEILYEEGINSVMVEGGGTLNGSLLKEGLVDELIVYIAPKLLGGR 178
Query: 324 GIPSPLEEGYLEKNFMCVRRDY-----FGSDVCLEY 354
P+ ++ +K + G D+ L
Sbjct: 179 DAPTLVDGEGFQKMADAPNLELKEIYQIGEDIVLTA 214
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil
reductase; Validated.
Length = 217
Score = 119 bits (300), Expect = 1e-27
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 8/193 (4%)
Query: 149 RSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELT 208
R ++ + A+S D + I+G ++VH LRA+ DA++VGIGTVLADDP LT
Sbjct: 2 RPYVIVNAAMSADGKLATKT-RYSRISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLT 60
Query: 209 -CRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNIN 266
R + +P+R+++D + D++I+ A I+ P + KK
Sbjct: 61 VHRYAAGKPENPIRVVVDSSARTPPDARILDGP--AKTIVAVSEAAPSEKVEELEKKGAE 118
Query: 267 IIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGG 324
+I DL LL L RG+ L+VEGG + S LVD + + +IG
Sbjct: 119 VIVAGGERVDLPDLLEDLYERGIKRLMVEGGGTLIWSMFKEGLVDEVRVTVGPKIIGGKD 178
Query: 325 IPSPLE-EGYLEK 336
P+ + EG++E+
Sbjct: 179 APTLADGEGFIEE 191
>gnl|CDD|130572 TIGR01508, rib_reduct_arch,
2,
5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase, archaeal. in riboflavin biosynthesis is
reduced first, and then deaminated, in both Archaea and
Fungi, opposite the order in Bacteria. The subsequent
deaminase is not presently known and is not closely
homologous to the deaminase domain (3.5.4.26) fused to
the reductase domain (1.1.1.193) similar to this protein
but found in most bacteria.
Length = 210
Score = 103 bits (259), Expect = 7e-23
Identities = 59/180 (32%), Positives = 95/180 (52%), Gaps = 7/180 (3%)
Query: 151 HITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
++ + +A+S D + I+ +VH +RA+ DAI+VGIGTVLADDP LT +
Sbjct: 2 YVIVNVAMSLDGKLATIN-RDSRISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVK 60
Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLAL-AFRKKNINIIY 269
+ +P+R+++D ++ L+++I+ A II T D+P + K + ++
Sbjct: 61 -KIKSDRNPVRVVVDSKLRVPLNARILNKD--AKTIIATSEDEPEEKVEELEDKGVEVVK 117
Query: 270 C--DCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
DLKKLL IL +GV L+VEGG + S LVD I +Y + + G P+
Sbjct: 118 FGEGRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLFKENLVDEISVYIAPKIFGGRDAPT 177
>gnl|CDD|173182 PRK14719, PRK14719, bifunctional
RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase;
Provisional.
Length = 360
Score = 77.7 bits (191), Expect = 5e-15
Identities = 64/240 (26%), Positives = 122/240 (50%), Gaps = 27/240 (11%)
Query: 138 LHAYLTRQVEKRSH---ITLKIAVSQDNMIGMAGCGSVP-------ITGFISKNQVHLLR 187
L+ Y++R++ S I L +S +GM G + I+G +VH +R
Sbjct: 120 LYPYISRRININSDLSDIMLPYVISN---VGMTLDGKLATIENDSRISGENDLKRVHEIR 176
Query: 188 AQSDAILVGIGTVLADDPELTC-RLNGLQEHSPMRIILDPHFKLSLDSKII----KTALL 242
DAI+VGIGTVL DDP LT ++N + +P+RI++D + K+ L+++++ KT +
Sbjct: 177 KDVDAIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLNARVLNKDAKTVIA 236
Query: 243 APVIIVTENDDPVLALAFRKKNINIIYCDCR--DLKKLLTILVGRGVTSLLVEGGAAVAH 300
I E ++ + L ++ I ++ + DL+K++ + G+ +L+EGG +
Sbjct: 237 TTTPISDEKEEKIRKL--KEMGITVLQAGVQKVDLRKIMNEIYKMGINKILLEGGGTLNW 294
Query: 301 SFINSRLVDSIILYRSQIVIGEGGIPSPLE-EGY--LEKNFMCVRRDYFGSD--VCLEYI 355
L++ + +Y + V G P+ ++ EG+ +E+ ++Y+ D + LEY
Sbjct: 295 GMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEECTKLELKNYYPLDDGIVLEYR 354
>gnl|CDD|184482 PRK14059, PRK14059, hypothetical protein; Provisional.
Length = 251
Score = 47.7 bits (114), Expect = 4e-06
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 26/144 (18%)
Query: 185 LLRAQSDAILVGIGTV---------LADDPELTCRLNGLQEHSPMRII-----LDPHFKL 230
LLRA +D ++VG GTV L+ + G E P+ ++ LDP +L
Sbjct: 65 LLRALADVVVVGAGTVRAENYGGVRLSAAARQQRQARGQAEVPPIAVVSRSGDLDPDSRL 124
Query: 231 SLDSKIIKTALLAPVIIVTENDDP---VLALAFRKKNINIIYCDCR--DLKKLLTILVGR 285
++++ P +++T LA + +++ DL + L R
Sbjct: 125 FTETEV-------PPLVLTCAAAAADRRRRLAGLAEVADVVVAGPDTVDLAAAVAALAAR 177
Query: 286 GVTSLLVEGGAAVAHSFINSRLVD 309
G+ +L EGG + + + LVD
Sbjct: 178 GLRRILCEGGPTLLGQLLAADLVD 201
>gnl|CDD|177417 PHA02588, cd, deoxycytidylate deaminase; Provisional.
Length = 168
Score = 44.4 bits (105), Expect = 5e-05
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Query: 54 HAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
HAE+ A+ A G GAT YVT PC P CA+ I + GI+++V C
Sbjct: 83 HAELNAILFAARNGISIEGATMYVTASPC------PDCAKAIAQSGIKKLVYC 129
>gnl|CDD|182786 PRK10860, PRK10860, tRNA-specific adenosine deaminase; Provisional.
Length = 172
Score = 43.6 bits (103), Expect = 8e-05
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Query: 31 VACLIVKDGIVIGRG----VTAYGGCPHAEVQALEEAGEEARG-----ATAYVTLEPCSH 81
V ++V + VIG G + + HAE+ AL + G + AT YVTLEPC
Sbjct: 35 VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPCVM 94
Query: 82 YGRSPPCAQFIIECGIRRVV 101
CA ++ I R+V
Sbjct: 95 ------CAGAMVHSRIGRLV 108
>gnl|CDD|162171 TIGR01042, V-ATPase_V1_A, V-type (H+)-ATPase V1, A subunit. This
models eukaryotic vacuolar (H+)-ATPase that is
responsible for acidifying cellular compartments. This
enzyme shares extensive sequence similarity with
archaeal ATP synthase.
Length = 591
Score = 32.8 bits (75), Expect = 0.16
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 14/60 (23%)
Query: 165 GMAGCGSVPITGFISKNQVHLLRAQSDAIL-VGIGT-------VLADDPELTCRLNGLQE 216
G GCG I+ +SK + SDAI+ VG G VL D PELT ++G +E
Sbjct: 233 GAFGCGKTVISQSLSK------YSNSDAIVYVGCGERGNEMAEVLMDFPELTMEVDGREE 286
>gnl|CDD|131622 TIGR02571, ComEB, ComE operon protein 2. This protein is found in
the ComE operon for "late competence" as characterized
in B. subtilis. Proteins in this family contain homology
to a cytidine/deoxycytidine deaminase domain family
(pfam00383), and may carry out this activity.
Length = 151
Score = 30.6 bits (69), Expect = 0.60
Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 28/98 (28%)
Query: 25 TSTNPSVACLIVKDGIVIGRGVT---------AYGGC----------PHAEVQALEEA-- 63
T T SV IV+D +I G GC HAE+ AL +
Sbjct: 21 TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAK 80
Query: 64 -GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRV 100
G GA YVT PC C + II+ GI+++
Sbjct: 81 FGVSTEGAEIYVTHFPCLQ------CTKSIIQAGIKKI 112
>gnl|CDD|184335 PRK13802, PRK13802, bifunctional indole-3-glycerol phosphate
synthase/tryptophan synthase subunit beta; Provisional.
Length = 695
Score = 28.8 bits (64), Expect = 2.3
Identities = 13/21 (61%), Positives = 15/21 (71%)
Query: 187 RAQSDAILVGIGTVLADDPEL 207
RA +DA+LVG G ADD EL
Sbjct: 231 RAGADAVLVGEGVATADDHEL 251
>gnl|CDD|179535 PRK03092, PRK03092, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 304
Score = 28.8 bits (65), Expect = 2.7
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
Query: 33 CLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFI 92
C++V D I G + V+AL+EAG A+ T H S P A+ +
Sbjct: 204 CVLVDDMIDTGGTIAG-------AVRALKEAG--AKDVIIAAT-----HGVLSGPAAERL 249
Query: 93 IECGIRRVVV 102
CG R VVV
Sbjct: 250 KNCGAREVVV 259
>gnl|CDD|161817 TIGR00321, dhys, deoxyhypusine synthase. This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two.
Length = 301
Score = 28.5 bits (64), Expect = 2.7
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 256 LALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYR 315
L L F K ++ RD++KL I+ T +++ GG H +N+ L+ Y
Sbjct: 189 LMLFFYTKKNSLRIDIVRDIRKLNDIVFNSERTGVIILGGGLPKHFILNACLLREGADYA 248
Query: 316 SQIVIG---EGGIP-SPLEEG 332
QI +G + +PLEE
Sbjct: 249 VQITTDQPQDGSLSGAPLEEA 269
>gnl|CDD|162596 TIGR01910, DapE-ArgE, acetylornithine deacetylase or
succinyl-diaminopimelate desuccinylase. This group of
sequences contains annotations for both acetylornithine
deacetylase and succinyl-diaminopimelate desuccinylase,
but does not contain any members with experimental
characterization. Bacillus, Staphylococcus and
Sulfolobus species contain multiple hits to this
subfamily and each may have a separate activity.
Determining which is which must await further laboratory
research.
Length = 375
Score = 28.5 bits (64), Expect = 2.9
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 19/69 (27%)
Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEE-----------------AGEEAR 68
T+P + KDG + GRG T G A + AL+ EE+
Sbjct: 85 KTDPFKP--VEKDGKLYGRGATDMKGGLVALLYALKAIREAGIKPNGNIILQSVVDEESG 142
Query: 69 GATAYVTLE 77
A L+
Sbjct: 143 EAGTLYLLQ 151
>gnl|CDD|172358 PRK13831, PRK13831, conjugal transfer protein TrbI; Provisional.
Length = 432
Score = 27.8 bits (62), Expect = 4.7
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 8/48 (16%)
Query: 153 TLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVG-IGT 199
TL+I GMAG + GF K H LR AIL+ IGT
Sbjct: 321 TLQIG-------GMAGTDAEGYGGFKDKVDRHYLRTFGSAILIALIGT 361
>gnl|CDD|148524 pfam06953, ArsD, Arsenical resistance operon trans-acting repressor
ArsD. This family consists of several bacterial
arsenical resistance operon trans-acting repressor ArsD
proteins. ArsD is a trans-acting repressor of the
arsRDABC operon that confers resistance to arsenicals
and antimonials in Escherichia coli. It possesses
two-pairs of vicinal cysteine residues, Cys(12)-Cys(13)
and Cys(112)-Cys(113), that potentially form separate
binding sites for the metalloids that trigger
dissociation of ArsD from the operon. However, as a
homodimer it has four vicinal cysteine pairs.
Length = 119
Score = 27.6 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 102 VCVDDPD---VRVSGRGLQWLSQKGIIVDR 128
VC D D VR + L WL Q G+ V+R
Sbjct: 17 VCGPDVDPELVRFAA-DLDWLKQNGVEVER 45
>gnl|CDD|178741 PLN03200, PLN03200, cellulose synthase-interactive protein;
Provisional.
Length = 2102
Score = 27.8 bits (62), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 46 VTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSH 81
+TA GG P VQ LE ++A+ +A V C H
Sbjct: 484 ITAAGGIPPL-VQLLETGSQKAKEDSATVLWNLCCH 518
>gnl|CDD|179809 PRK04286, PRK04286, hypothetical protein; Provisional.
Length = 298
Score = 27.2 bits (61), Expect = 6.0
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 30 SVACLI-VKD-GIVIGRGVTA----YGGCPH-AEVQALEEAGEEARGATAYVTLEPCSHY 82
S+A + KD I+I GV+ YG PH E++ LEE E+ + SHY
Sbjct: 15 SMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHY 74
>gnl|CDD|182697 PRK10749, PRK10749, lysophospholipase L2; Provisional.
Length = 330
Score = 26.9 bits (60), Expect = 7.8
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 105 DDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI-----FLHAYLTRQVEKRSH 151
DDP++RV G W+ + + ++++ G I L A R V+ R H
Sbjct: 227 DDPELRVGGPTYHWVRESILAGEQVLAGAGDITTPLLLLQAEEERVVDNRMH 278
>gnl|CDD|177585 PHA03332, PHA03332, membrane glycoprotein; Provisional.
Length = 1328
Score = 26.9 bits (59), Expect = 7.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 88 CAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
CA + EC R +VC D VRVS GL
Sbjct: 784 CAGNVTECTPRATLVCSMDVSVRVSIAGLL 813
>gnl|CDD|161830 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP).
Length = 851
Score = 27.0 bits (60), Expect = 8.0
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 6/24 (25%)
Query: 320 IGEGGIPSPLEEGYLEKNFMCVRR 343
+ +G +PS GY+ +RR
Sbjct: 288 LADGVVPSNEGRGYV------LRR 305
>gnl|CDD|185453 PTZ00110, PTZ00110, helicase; Provisional.
Length = 545
Score = 27.0 bits (60), Expect = 8.6
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 156 IAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQ 189
IA+S +MIG+A GS F+ VH + AQ
Sbjct: 163 IALSGRDMIGIAETGSGKTLAFLLPAIVH-INAQ 195
>gnl|CDD|184437 PRK13983, PRK13983, diaminopimelate aminotransferase; Provisional.
Length = 400
Score = 26.7 bits (60), Expect = 9.2
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 23 GLTSTNPSVACLIVKDGIVIGRGV 46
L T+P +VKDG + GRG
Sbjct: 94 SLWETDPFKP--VVKDGKIYGRGS 115
>gnl|CDD|181688 PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase;
Validated.
Length = 1165
Score = 26.7 bits (60), Expect = 9.2
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 96 GIRRVVVCVDDPD 108
G++R+VV D+P+
Sbjct: 564 GVKRIVVVTDEPE 576
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.324 0.140 0.420
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,052,634
Number of extensions: 401360
Number of successful extensions: 764
Number of sequences better than 10.0: 1
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 32
Length of query: 364
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 269
Effective length of database: 3,941,713
Effective search space: 1060320797
Effective search space used: 1060320797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.1 bits)