RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780348|ref|YP_003064761.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus Liberibacter asiaticus str. psy62] (364 letters) >2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomics in europe, spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Score = 242 bits (617), Expect = 1e-64 Identities = 127/372 (34%), Positives = 186/372 (50%), Gaps = 18/372 (4%) Query: 1 MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60 + + D +M+ AL+ ++ T NP+V C+IVKDG ++G G G PHAEV AL Sbjct: 24 LYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL 83 Query: 61 EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120 AGE+A+GATAYVTLEPCSH+GR+PPC +I G+ RVV + DP+ +V+GRGL L Sbjct: 84 RMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ 143 Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179 Q GI V + L+ +L R +I LK+ S D MA S IT + Sbjct: 144 QAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQA 203 Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHF 228 + V LLRAQS AIL TVLADDP LT R + L E + P+RI++D Sbjct: 204 RRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN 263 Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288 +++ +I++ +D + + + DL L+ L + + Sbjct: 264 RVTPVHRIVQQP--GETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQIN 321 Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRD 344 S+ VE G +A + + + LVD +I+Y + ++G G + F Sbjct: 322 SIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIR 381 Query: 345 YFGSDVCLEYIG 356 + G DVCL +G Sbjct: 382 HVGPDVCLHLVG 393 >2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Score = 218 bits (555), Expect = 2e-57 Identities = 120/358 (33%), Positives = 177/358 (49%), Gaps = 9/358 (2%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64 S + +M AL ++ G T +NP V ++VKDG ++G G G HAEV A+ AG Sbjct: 12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71 Query: 65 EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124 A GA YVTLEPCSHYG++PPCA+ II GI+RV V + DP+ V+GRG+ + + GI Sbjct: 72 AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131 Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183 V + ++ L+ + ++TLK A S D I + S IT ++ Sbjct: 132 EVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDA 191 Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243 R +ILVG+GTV AD+P LTCRL + P+R+ILD + D+K+I + Sbjct: 192 QQYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAP 250 Query: 244 PVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301 I T +++ L+ NI + + + +L IL G+ S+ VEGG+AV S Sbjct: 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310 Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 F+ II Y + +IG PS + + G D+ L Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTA 368 >2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/ 5-amino-6-(5-phosphoribosylamino)uracil...; TM1828, structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Score = 196 bits (499), Expect = 6e-51 Identities = 110/351 (31%), Positives = 170/351 (48%), Gaps = 17/351 (4%) Query: 9 RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65 FM A+ ++ +G + NP V ++VKDG +I G Y G PHAE A+E A GE Sbjct: 16 TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGE 75 Query: 66 EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125 + RGAT VTLEPC H+G++PPC IIE GI+ VV+ DP+ ++ + + Sbjct: 76 DLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEV 135 Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185 ++ ++E E K ++T +KR + LK A + D I S IT + Sbjct: 136 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHE- 194 Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245 +R A+LVG GTVL D+P+LTCRL +P+R+ILD LS + A V Sbjct: 195 MRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFEE-NARV 251 Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305 I+ TE+++ ++ +L L R + S+LVEGG+ V F++ Sbjct: 252 IVFTESEE------AEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLD- 304 Query: 306 RLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 D + + S + G+G L + + F V ++ S+ +E Sbjct: 305 -HADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEM 354 >2p4g_A Hypothetical protein; NP_939744.1, structural genomics, joint center for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae NCTC13129} Length = 270 Score = 114 bits (286), Expect = 3e-26 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 25/234 (10%) Query: 123 GIIVDRMMES------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176 G++ D +S + ++ L S + ++G S P+ Sbjct: 1 GMLTDMQRDSASSSTVTTEQIVYGALPLTTINEPECRAIAITSINGSATLSG-VSGPMGD 59 Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHF 228 + + LR +DAI+VG T ++ +G+ + P +L Sbjct: 60 QTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCGLPKLTLLSKSL 119 Query: 229 KLSLDSKIIKTA---LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKL 278 S++ L+P++I + + R + + + + LK Sbjct: 120 YFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIA 179 Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332 L R + + +EGG +V ++ +VD + L + +I P + Sbjct: 180 FDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKIS 233 >3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl} Length = 231 Score = 106 bits (264), Expect = 1e-23 Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 9/218 (4%) Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202 + S + + I++S D + G + KN A L Sbjct: 14 NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREK 73 Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262 + + +R + + ++ + + + R+ Sbjct: 74 LKLGTGGETGPVND--MVRHTFERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERR 131 Query: 263 KNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316 + + + L G + + GGA V ++N LVD + + Sbjct: 132 NPWVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGGANVIQQYLNLGLVDELEIALI 191 Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354 ++ G GG F R + L Y Sbjct: 192 PVIFG-GGRRLFENLHEPLPQFRIDRVLASPTATHLRY 228 >2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Length = 219 Score = 102 bits (254), Expect = 1e-22 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 11/217 (5%) Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206 EK+ +I + ++ D + I+ +VH +RA D I+VGIGTVL DDP Sbjct: 1 EKKPYIISNVGMTLDGKLATIN-NDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59 Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 LT + P+RI++D ++ L+++++ + + ++ +++ Sbjct: 60 LTVHKIKSDRN-PVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMG 118 Query: 267 IIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322 + C DLKKL+ IL +G+ S+L+EGG + LVD + +Y + + G Sbjct: 119 VEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGG 178 Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354 P+ ++ + G + LE+ Sbjct: 179 KEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 215 >1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Score = 95.5 bits (237), Expect = 2e-20 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 21/142 (14%) Query: 4 SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT----AYGGCPHAEV 57 S +D + M A + G + ++ KDG V+GRG H E+ Sbjct: 11 SKWDQKGMDIAYEEAAL--GYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEI 68 Query: 58 QALEE----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113 LE G+ + T Y TL PC C II GI R VV +V Sbjct: 69 STLENCGRLEGKVYKDTTLYTTLSPC------DMCTGAIIMYGIPRCVV---GENVNFKS 119 Query: 114 RGLQWLSQKGIIVDRMMESEGK 135 +G ++L +G V + + K Sbjct: 120 KGEKYLQTRGHEVVVVDDERCK 141 >2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Length = 178 Score = 84.1 bits (207), Expect = 5e-17 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 35/160 (21%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---------------------- 42 + FM+ A ++ N V IV I Sbjct: 11 EWPEYFMAVAFLSAQRS---KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 67 Query: 43 --GRGVTAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99 + T Y HAE+ A + + + +G + YV L PC+ CA+ II+ GI+ Sbjct: 68 AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 121 Query: 100 VVVCVDD-PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138 V+ D D + + G+ + + KI + Sbjct: 122 VIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVI 161 >2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Length = 184 Score = 78.6 bits (193), Expect = 2e-15 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 34/154 (22%) Query: 5 SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48 S+ FM+ A S+ T V ++VK+ +I G Sbjct: 40 SWQDYFMANAELISKRS---TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEME 96 Query: 49 ---YGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102 HAE+ AL + +E A YVT PC + C + +++ G++++ Sbjct: 97 DGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCIN------CTKALLQAGVKKITY 150 Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136 + ++ ++QK + + K+ Sbjct: 151 NTAYR---IHPFAIELMTQKEVEYVQHDVPRVKL 181 >1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 Length = 168 Score = 74.1 bits (181), Expect = 4e-14 Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 11/163 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 +M AL ++ V ++V + VIG G G A A + Sbjct: 9 HEYWMRHALTLAK--RAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 66 Query: 67 ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 L + Y CA +I I RVV D +G + L G Sbjct: 67 GGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG 126 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 + I + ++ E L + R + K S D Sbjct: 127 MNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 168 >3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, translation, tRNA processing, hydrolase, structural genomics; 2.80A {Homo sapiens} Length = 189 Score = 73.6 bits (180), Expect = 6e-14 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 30/171 (17%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62 ++M A+ ++ L +T V CL+V + V+G+G HAE+ A+++ Sbjct: 26 TEKWMEEAMHMAK--EALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ 83 Query: 63 AG-----------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111 E YVT+EPC CA + I VV + Sbjct: 84 VLDWCRQSGKSPSEVFEHTVLYVTVEPC------IMCAAALRLMKIPLVVYGCQNERFGG 137 Query: 112 SGRGLQWLSQKGI-------IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155 G L S + E L + ++ ++ Sbjct: 138 CGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSKVR 188 >2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Length = 179 Score = 73.3 bits (179), Expect = 9e-14 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 10/163 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 FM AL+ S L + C+IVKDG +IGRG A A + A A E Sbjct: 16 QTYFMQEALKESE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 73 Query: 67 ARGATAYVTLE---PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 A L C+ I I V+ + Q L+ + Sbjct: 74 ANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDER 133 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161 + + ++ ++ + + + E++ I D Sbjct: 134 LNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSD 176 >1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Length = 171 Score = 68.6 bits (167), Expect = 2e-12 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 26/167 (15%) Query: 1 MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPH 54 +P S F+ ALR ++ V +IVK+G +I + H Sbjct: 15 VPRGSHMGKEYFLKVALREAK--RAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAH 72 Query: 55 AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109 AE+ A++EA G YVTLEPC C+ ++ I +V+ D Sbjct: 73 AEMLAIKEACRRLNTKYLEGCELYVTLEPC------IMCSYALVLSRIEKVIFSALDKKH 126 Query: 110 RVSGRGLQWLSQK----GIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152 L + + + E L + + R++I Sbjct: 127 GGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKK---LRNNI 170 >1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Score = 68.3 bits (166), Expect = 3e-12 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 16/125 (12%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62 F+ A+ + V P +IVKDG +I G T+ HAEV A+ + Sbjct: 11 HETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69 Query: 63 AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117 A + + Y + EPC P C I + V + D +G Sbjct: 70 ACKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDS 123 Query: 118 WLSQK 122 ++ ++ Sbjct: 124 FIYKE 128 >3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint center for structural genomics, JCSG; 1.90A {Pediococcus pentosaceus atcc 25745} Length = 178 Score = 67.6 bits (164), Expect = 5e-12 Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 41/207 (19%) Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFIS----KNQVHLLRAQSDAILVGIGTVLADDPEL 207 + L IA+S DN I + + + + ++ D +++G T +L Sbjct: 6 VILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKL 65 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267 + + IVT + ++ + Sbjct: 66 SPEKYVYADR--------------------------QTYIVTSH---------LGEDTDK 90 Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327 I + +L+ + + + GGA + + + L+D+ IL I +G G Sbjct: 91 IKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGI--R 148 Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEY 354 + + + V Y Sbjct: 149 LFDRLEEQVPVRLIDVYQKNELVYSIY 175 >2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Length = 144 Score = 65.3 bits (158), Expect = 2e-11 Identities = 27/121 (22%), Positives = 35/121 (28%), Gaps = 5/121 (4%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 FM AL +R + ++V DG VI R A Sbjct: 4 RTHFMELALVEAR--SAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 61 Query: 67 ARGATAYVTLEPCSHYG---RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 A A L Y CA I IRR+ DP G+++ SQ Sbjct: 62 ACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPT 121 Query: 124 I 124 Sbjct: 122 C 122 >2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; 2.30A {Bacillus subtilis} Length = 189 Score = 61.0 bits (147), Expect = 4e-10 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 30/209 (14%) Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201 +T +++R I L +AV+ D I L Q D IL G + Sbjct: 2 MTNNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLN-QIDTILYGRKSFD 59 Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261 + + + ++ + + + Sbjct: 60 LWGQYIPKNEDP-DTEKELWKLVHSK----------------KKYVFSRTQNE------- 95 Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321 N ++ + + L + + GGA++ +FIN LVD L +V+G Sbjct: 96 --IDNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLG 153 Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350 EG + N V F S V Sbjct: 154 EG--KPLFIDVKQRINLKMVNTRTFSSGV 180 >1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Length = 193 Score = 58.1 bits (139), Expect = 3e-09 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%) Query: 47 TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103 + HAE+ A+ A G GAT YVTL PC CA+ I + GI+++V C Sbjct: 97 WSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYC 150 Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133 + + L GI V + + Sbjct: 151 ETYDKNKPGWDDI--LRNAGIEVFNVPKKN 178 Score = 34.9 bits (79), Expect = 0.027 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 6/62 (9%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66 + + A S+ + V +I K+G +I G Y G P V + A E+ Sbjct: 3 ASTVLQIAYLVSQES---KCCSWKVGAVIEKNGRIISTG---YNGSPAGGVNCCDYAAEQ 56 Query: 67 AR 68 Sbjct: 57 GW 58 >2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Length = 159 Score = 58.0 bits (139), Expect = 4e-09 Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 10/151 (6%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA---LEEA 63 D FM+ A+ ++ + +I KD VI R A E Sbjct: 7 DIYFMTLAIEEAK--KAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64 Query: 64 GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123 + G+ CA I+ I RVV DDP SG + L Q Sbjct: 65 AAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN 124 Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKR 149 + +++ L + + Sbjct: 125 FNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155 >2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region; structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2 Length = 197 Score = 56.3 bits (135), Expect = 1e-08 Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 33/164 (20%) Query: 7 DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV--TAYGGCP--HAEVQAL 60 M L R + + A + + G++I G G C HAE+ AL Sbjct: 28 PEARMGYVLELVR--ANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILAL 85 Query: 61 EEAGEE----------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110 A + + EPC C +I G+R +V DV Sbjct: 86 SLAQAKLDTHDLSADGLPACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVE 139 Query: 111 VSG--------RGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145 G + L +GI V ++ L Y Sbjct: 140 AIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183 >3ky8_A Putative riboflavin biosynthesis protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL; 2.12A {Shewanella loihica} Length = 197 Score = 52.5 bits (125), Expect = 1e-07 Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 41/203 (20%) Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHL----LRAQSDAILVGIGTVLADDPELTC 209 + IA S D I + + N V L + D +++G T+ Sbjct: 24 VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLS---- 79 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 P+ ++ + ++ + V +V Sbjct: 80 FDCDWPYSKPVFVLSNTMTEVPQGYE-------DKVFLVKG------------------- 113 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329 L ++ L +G L + G +F+ L+D +++ R I++G GG+P Sbjct: 114 ----KLVDIIADLNAKGFNELYI-DGGVTIQNFLKEDLIDEMVITRFPILLG-GGVPL-F 166 Query: 330 EEGYLEKNFMCVRRDYFGSDVCL 352 E +F ++ + + Sbjct: 167 GELESSLSFNVIKSEVVLDSLTQ 189 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 41.1 bits (96), Expect = 4e-04 Identities = 74/460 (16%), Positives = 120/460 (26%), Gaps = 205/460 (44%) Query: 11 MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV-TAYGGCPHAEV------QALEE 62 M A ST P L + G + V TA A + L E Sbjct: 1 MDAY-----------STRP----LTLSHGSLEHVLLVPTASF--FIASQLQEQFNKILPE 43 Query: 63 AGEEARGATAYVTLEPCSHYGRSPP--CAQFIIECG--IRRVVVCVDDPDVRVSGRGLQW 118 E EP +P +F+ G V + V + L Sbjct: 44 PTEGFAA-----DDEP-----TTPAELVGKFL---GYVSSLV----EPSKVGQFDQVLN- 85 Query: 119 LSQKGIIVDRMMESEGKIFL-----HAYLTR-------QVEKRSHITLK-----IAVSQD 161 + + E+ +L HA + + K + +K +++ Sbjct: 86 -----LCLTEF-ENC---YLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKR 135 Query: 162 NMIGMAGCGSVPITGFISKNQVH-LLRAQSD------AILVGIGTV------LAD----- 203 K L RA + AI G G L D Sbjct: 136 P---------------FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180 Query: 204 ----DP---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK----------TALL--AP 244 L+ L + + + F L+ I++ L P Sbjct: 181 HVLVGDLIKFSAETLSELIR-TTLDA--EKVFTQGLN--ILEWLENPSNTPDKDYLLSIP 235 Query: 245 V---IIVTENDDPVLALAFRKKNINIIYC-DCRDLKK----LLTILVGRGVT--S--LLV 292 + +I V+ LA Y + L L + L +G T S L+ Sbjct: 236 ISCPLI------GVIQLAH--------YVVTAKLLGFTPGELRSYL--KGATGHSQGLVT 279 Query: 293 EGGAAVA-----HSFI-NSRLVDSI---ILYRSQ-----------IV---IGEG-GIPSP 328 A+A SF + R ++ I R I+ + G+PSP Sbjct: 280 --AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337 Query: 329 LEEGYLEKNFM-CVR---RDYFGSDVCLEYIGK-NLCLQE 363 M + + + +Y+ K N L Sbjct: 338 ----------MLSISNLTQ-----EQVQDYVNKTNSHLPA 362 >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* Length = 452 Score = 30.2 bits (68), Expect = 0.65 Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 30/134 (22%) Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMR------------ 221 G + QV L ++ L+G + DD R L G + + Sbjct: 216 GINTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG 275 Query: 222 -----IILDP----HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--- 269 +I + +++ A L V + +D + + ++ + Sbjct: 276 AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHG 335 Query: 270 ----CDCRDLKKLL 279 L++ L Sbjct: 336 NEEQLYIDTLREAL 349 >2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae} Length = 488 Score = 30.3 bits (68), Expect = 0.76 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 167 AGCGSVPITGFIS-KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225 A VP + F+ K LL +SD + G++ +L+ + I L Sbjct: 363 AHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSL---------KLDPSRFGPNPLIKLG 413 Query: 226 PHFK 229 HFK Sbjct: 414 SHFK 417 >1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus HB8} SCOP: d.90.1.1 Length = 205 Score = 29.9 bits (66), Expect = 0.87 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 13/170 (7%) Query: 53 PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112 P ++ + EA A +A+ R P + + E + V + + Sbjct: 29 PEGLLREILEAALRA--PSAWNLQPWRIVVVRDPATKRALREAAFGQAHVEEAPVVLVLY 86 Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA----- 167 L+ ++ ++ E + + R K S + I + Sbjct: 87 ADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYXXXX 146 Query: 168 ----GCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--LADDPELTCRL 211 G GSVP+ GF + +L S A + + + A++ + RL Sbjct: 147 XEAYGLGSVPMLGFDPERVRAILGLPSRAAIPALVALGYPAEEGYPSHRL 196 >3ix7_A Uncharacterized protein TTHA0540; unknown function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Thermus thermophilus HB8} Length = 134 Score = 28.9 bits (64), Expect = 2.0 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%) Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270 L L+E +P+ ++ S+D K++ A +VT +D L R + + Sbjct: 65 LERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALVT--NDHALLQMARIYGVKALS- 121 Query: 271 DCRDLKKLL 279 + L + L Sbjct: 122 -IQALAQAL 129 >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, X-RAY diffraction, riken structural genomics/proteomics initiative; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 Length = 254 Score = 28.5 bits (63), Expect = 2.2 Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 G+ K ++ L DA+L+G + A D E R Sbjct: 216 GYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALR 250 >3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20 familiy, phosphorylase/hydrolase-L structural genomics; HET: MSE; 1.50A {Legionella pneumophila subsp} Length = 472 Score = 28.3 bits (62), Expect = 2.9 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 3/102 (2%) Query: 26 STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85 S + ++K+G++ GRG G +A + A+ ++ + + S Sbjct: 108 SDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGS 167 Query: 86 PPCAQFIIECGIR---RVVVCVDDPDVRVSGRGLQWLSQKGI 124 +I R +V D + S +G Sbjct: 168 YDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGN 209 >3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase, structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824} Length = 354 Score = 27.9 bits (61), Expect = 3.4 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 10/179 (5%) Query: 89 AQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147 Q I + +RV + + + G + + + I ++ + + F T + Sbjct: 26 GQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIG-TNAFK 84 Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 + + I + G A + + + + S+ L + Sbjct: 85 IPAEVDALIGIG----GGKAIDAVKYMAFLRKLPFISVPTSTSNDGFSSPVASLLING-- 138 Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266 + + +P I++D K I + + V +T D K I+ Sbjct: 139 --KRTSVPAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWKFEEENHKSIID 195 >1se8_A Single-strand binding protein; DNA binding protein; 1.80A {Deinococcus radiodurans} SCOP: b.40.4.3 Length = 301 Score = 28.1 bits (62), Expect = 3.6 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 10/100 (10%) Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167 V + G+ +W +++ + + EG + + + KRS + + + + Sbjct: 55 RVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRS--AVNVKALRMEQL--- 109 Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207 G+ P + V + A ++ +++G + DPE+ Sbjct: 110 --GTQPELIQDAGGGVRMSGAMNEVLVLG---NVTRDPEI 144 >1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Length = 212 Score = 27.8 bits (61), Expect = 3.7 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 3/40 (7%) Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230 + I+ I + L P + C+ + +++ ++I D +L Sbjct: 152 EGIMSAIQSALRVTPVVKCKSDAVEQ---VQICFDKTLQL 188 >3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* Length = 267 Score = 27.7 bits (61), Expect = 4.4 Identities = 12/30 (40%), Positives = 17/30 (56%) Query: 38 DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 D I++GRG+ A G E + +AG EA Sbjct: 229 DIIIVGRGLFAKGRDAKVEGERYRKAGWEA 258 >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A Length = 251 Score = 27.2 bits (60), Expect = 5.2 Identities = 9/35 (25%), Positives = 17/35 (48%) Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210 G ++ LR + +A+LVG + A++P Sbjct: 210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPRRFLE 244 >1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A* Length = 168 Score = 27.1 bits (59), Expect = 6.0 Identities = 24/174 (13%), Positives = 45/174 (25%), Gaps = 44/174 (25%) Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209 + + +A+ I + F + + + +++G T L Sbjct: 1 AKVIFVLAMDVSGKI---ASSVESWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPE 57 Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269 RLN + P Sbjct: 58 RLNVVLTRRPKTSNNPSL-----------------------------------------V 76 Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323 ++ L G+G + V GG V F+ +LVD + + V G+G Sbjct: 77 FFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKG 130 >2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Porphyromonas gingivalis W83} Length = 506 Score = 26.9 bits (59), Expect = 7.0 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 1/80 (1%) Query: 32 ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91 A V +G G P A+ + A + + Sbjct: 11 AAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGV 70 Query: 92 IIECG-IRRVVVCVDDPDVR 110 + + ++ + D+R Sbjct: 71 LAQADAVKFRTPYQSNKDLR 90 >3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, alternative splicing, disease mutation, glycosyltransferase, lyase; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3ewy_A* 3ewx_A* ... Length = 260 Score = 26.6 bits (58), Expect = 9.2 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Query: 38 DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67 D I++GRG+ + +A EA Sbjct: 225 DIIIVGRGII-SAADRLEAAEMYRKAAWEA 253 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.140 0.420 Gapped Lambda K H 0.267 0.0460 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,232,403 Number of extensions: 154863 Number of successful extensions: 566 Number of sequences better than 10.0: 1 Number of HSP's gapped: 527 Number of HSP's successfully gapped: 46 Length of query: 364 Length of database: 5,693,230 Length adjustment: 94 Effective length of query: 270 Effective length of database: 3,414,294 Effective search space: 921859380 Effective search space used: 921859380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 57 (26.4 bits)