RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780348|ref|YP_003064761.1|
5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine [Candidatus
Liberibacter asiaticus str. psy62]
         (364 letters)



>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure,
           structural genomics, structural proteomics in europe,
           spine, hydrolase; 2.60A {Escherichia coli} PDB: 2obc_A*
           2o7p_A*
          Length = 402

 Score =  242 bits (617), Expect = 1e-64
 Identities = 127/372 (34%), Positives = 186/372 (50%), Gaps = 18/372 (4%)

Query: 1   MPVSSFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQAL 60
           + +   D  +M+ AL+ ++     T  NP+V C+IVKDG ++G G     G PHAEV AL
Sbjct: 24  LYIQGQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHAL 83

Query: 61  EEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLS 120
             AGE+A+GATAYVTLEPCSH+GR+PPC   +I  G+ RVV  + DP+ +V+GRGL  L 
Sbjct: 84  RMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQ 143

Query: 121 QKGIIVDRMMESEGKIFLHA-YLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFIS 179
           Q GI V   +       L+  +L R      +I LK+  S D    MA   S  IT   +
Sbjct: 144 QAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQA 203

Query: 180 KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHS-----------PMRIILDPHF 228
           +  V LLRAQS AIL    TVLADDP LT R + L E +           P+RI++D   
Sbjct: 204 RRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQN 263

Query: 229 KLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVT 288
           +++   +I++             +D        +  +   +    DL  L+  L  + + 
Sbjct: 264 RVTPVHRIVQQP--GETWFARTQEDSREWPETVRTLLIPEHKGHLDLVVLMMQLGKQQIN 321

Query: 289 SLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLE----KNFMCVRRD 344
           S+ VE G  +A + + + LVD +I+Y +  ++G          G  +      F      
Sbjct: 322 SIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIR 381

Query: 345 YFGSDVCLEYIG 356
           + G DVCL  +G
Sbjct: 382 HVGPDVCLHLVG 393


>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase
           domain and reductase domain, hydrolase, oxidoreductase;
           2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB:
           2d5n_A* 3ex8_A*
          Length = 373

 Score =  218 bits (555), Expect = 2e-57
 Identities = 120/358 (33%), Positives = 177/358 (49%), Gaps = 9/358 (2%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAG 64
           S +  +M  AL  ++   G T +NP V  ++VKDG ++G G     G  HAEV A+  AG
Sbjct: 12  SMEEYYMKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAG 71

Query: 65  EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGI 124
             A GA  YVTLEPCSHYG++PPCA+ II  GI+RV V + DP+  V+GRG+  + + GI
Sbjct: 72  AHAEGADIYVTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGI 131

Query: 125 IVDRMMESEGKIFLHAYLTRQVE-KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQV 183
            V   + ++    L+      +     ++TLK A S D  I  +   S  IT   ++   
Sbjct: 132 EVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDA 191

Query: 184 HLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLA 243
              R    +ILVG+GTV AD+P LTCRL  +    P+R+ILD    +  D+K+I   +  
Sbjct: 192 QQYRKTHQSILVGVGTVKADNPSLTCRLPNVT-KQPVRVILDTVLSIPEDAKVICDQIAP 250

Query: 244 PVIIVTE--NDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHS 301
             I  T   +++    L+    NI  +  +   +  +L IL   G+ S+ VEGG+AV  S
Sbjct: 251 TWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310

Query: 302 FINSRLVDSIILYRSQIVIGEGGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
           F+       II Y +  +IG    PS +     +                G D+ L  
Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTA 368


>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deaminase/
           5-amino-6-(5-phosphoribosylamino)uracil...; TM1828,
           structural genomics, PSI-2; HET: NDP; 1.80A {Thermotoga
           maritima} SCOP: c.71.1.2 c.97.1.2
          Length = 360

 Score =  196 bits (499), Expect = 6e-51
 Identities = 110/351 (31%), Positives = 170/351 (48%), Gaps = 17/351 (4%)

Query: 9   RFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEA---GE 65
            FM  A+  ++  +G  + NP V  ++VKDG +I  G   Y G PHAE  A+E A   GE
Sbjct: 16  TFMKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGE 75

Query: 66  EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKGII 125
           + RGAT  VTLEPC H+G++PPC   IIE GI+ VV+   DP+        ++ +    +
Sbjct: 76  DLRGATLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNPVSGNGVEKFRNHGIEV 135

Query: 126 VDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHL 185
           ++ ++E E K     ++T   +KR  + LK A + D  I      S  IT  +       
Sbjct: 136 IEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDKLRFKVHE- 194

Query: 186 LRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPV 245
           +R    A+LVG GTVL D+P+LTCRL      +P+R+ILD    LS     +     A V
Sbjct: 195 MRNIYSAVLVGAGTVLKDNPQLTCRLKE--GRNPVRVILDRKGVLSGKVFRVFEE-NARV 251

Query: 246 IIVTENDDPVLALAFRKKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINS 305
           I+ TE+++                     ++ +L  L  R + S+LVEGG+ V   F++ 
Sbjct: 252 IVFTESEE------AEYPPHVEKALSDCSVESILRNLYERDIDSVLVEGGSKVFSEFLD- 304

Query: 306 RLVDSIILYRSQIVIGEG--GIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
              D +  + S  + G+G       L +  +   F  V  ++  S+  +E 
Sbjct: 305 -HADVVFGFYSTKIFGKGLDVFSGYLSDVSVPPKFKVVNVEFSDSEFLVEM 354


>2p4g_A Hypothetical protein; NP_939744.1, structural genomics, joint
           center for structural genomics, JCSG; 2.30A
           {Corynebacterium diphtheriae NCTC13129}
          Length = 270

 Score =  114 bits (286), Expect = 3e-26
 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 25/234 (10%)

Query: 123 GIIVDRMMES------EGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITG 176
           G++ D   +S        +  ++  L                S +    ++G  S P+  
Sbjct: 1   GMLTDMQRDSASSSTVTTEQIVYGALPLTTINEPECRAIAITSINGSATLSG-VSGPMGD 59

Query: 177 FISKNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGL--------QEHSPMRIILDPHF 228
               + +  LR  +DAI+VG  T   ++       +G+        +   P   +L    
Sbjct: 60  QTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCGLPKLTLLSKSL 119

Query: 229 KLSLDSKIIKTA---LLAPVIIVTENDDPVLALAFRKKNINIIYCDCR-------DLKKL 278
                S++        L+P++I  +  +       R + +  +  +          LK  
Sbjct: 120 YFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPTSTNPLKIA 179

Query: 279 LTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPLEEG 332
              L  R +  + +EGG +V    ++  +VD + L  +  +I     P   +  
Sbjct: 180 FDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKIS 233


>3kgy_A Bifunctional deaminase-reductase domain protein; putative
           dihydrofolate reductase, structural genomics; HET: MSE
           NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
          Length = 231

 Score =  106 bits (264), Expect = 1e-23
 Identities = 28/218 (12%), Positives = 58/218 (26%), Gaps = 9/218 (4%)

Query: 143 TRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLA 202
               +  S + + I++S D  +   G      +    KN      A     L        
Sbjct: 14  NLYFQGMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREK 73

Query: 203 DDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRK 262
                      + +   +R   +      +  ++ +            +    +    R+
Sbjct: 74  LKLGTGGETGPVND--MVRHTFERTGAHIMGKRMFEGGERGWPEEAPFHTPVYVLTHERR 131

Query: 263 KNI------NIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRS 316
                       + +    + L       G   + + GGA V   ++N  LVD + +   
Sbjct: 132 NPWVRPGGTTFYFVNDGPEQALALAREAAGERDIRISGGANVIQQYLNLGLVDELEIALI 191

Query: 317 QIVIGEGGIPSPLEEGYLEKNFMCVRRDYFGSDVCLEY 354
            ++ G GG             F   R     +   L Y
Sbjct: 192 PVIFG-GGRRLFENLHEPLPQFRIDRVLASPTATHLRY 228


>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil
           reductase; oxidoreductase; HET: MA5 NAP EPE; 2.70A
           {Methanocaldococcus jannaschii} SCOP: c.71.1.2
          Length = 219

 Score =  102 bits (254), Expect = 1e-22
 Identities = 51/217 (23%), Positives = 96/217 (44%), Gaps = 11/217 (5%)

Query: 147 EKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPE 206
           EK+ +I   + ++ D  +         I+      +VH +RA  D I+VGIGTVL DDP 
Sbjct: 1   EKKPYIISNVGMTLDGKLATIN-NDSRISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPR 59

Query: 207 LTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
           LT        + P+RI++D   ++ L+++++       +    + ++         +++ 
Sbjct: 60  LTVHKIKSDRN-PVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMG 118

Query: 267 IIYCDCR----DLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGE 322
           +    C     DLKKL+ IL  +G+ S+L+EGG  +        LVD + +Y +  + G 
Sbjct: 119 VEVVKCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGG 178

Query: 323 GGIPSPLEEGYLEK-----NFMCVRRDYFGSDVCLEY 354
              P+ ++    +                G  + LE+
Sbjct: 179 KEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEF 215


>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A
           {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A
           1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
          Length = 161

 Score = 95.5 bits (237), Expect = 2e-20
 Identities = 37/142 (26%), Positives = 54/142 (38%), Gaps = 21/142 (14%)

Query: 4   SSFDARFMSAALRFSRWHVGLTSTNPSVACLIV--KDGIVIGRGVT----AYGGCPHAEV 57
           S +D + M  A   +    G       +   ++  KDG V+GRG            H E+
Sbjct: 11  SKWDQKGMDIAYEEAAL--GYKEGGVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEI 68

Query: 58  QALEE----AGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSG 113
             LE      G+  +  T Y TL PC        C   II  GI R VV     +V    
Sbjct: 69  STLENCGRLEGKVYKDTTLYTTLSPC------DMCTGAIIMYGIPRCVV---GENVNFKS 119

Query: 114 RGLQWLSQKGIIVDRMMESEGK 135
           +G ++L  +G  V  + +   K
Sbjct: 120 KGEKYLQTRGHEVVVVDDERCK 141


>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism,
           nucleotide biosynthesis, zinc, hexamer, hydrolase,
           metal-binding, phosphoprotein; 2.10A {Homo sapiens}
          Length = 178

 Score = 84.1 bits (207), Expect = 5e-17
 Identities = 32/160 (20%), Positives = 54/160 (33%), Gaps = 35/160 (21%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVI---------------------- 42
            +   FM+ A   ++        N  V   IV     I                      
Sbjct: 11  EWPEYFMAVAFLSAQRS---KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT 67

Query: 43  --GRGVTAYGGCPHAEVQA-LEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRR 99
              +  T Y    HAE+ A + +   + +G + YV L PC+       CA+ II+ GI+ 
Sbjct: 68  AENKLDTKYPYVCHAELNAIMNKNLTDVKGCSMYVALFPCNE------CAKLIIQAGIKE 121

Query: 100 VVVCVDD-PDVRVSGRGLQWLSQKGIIVDRMMESEGKIFL 138
           V+   D   D   +       +  G+   + +    KI +
Sbjct: 122 VIFMSDKYHDSDEATAARLLFNMAGVTFRKFIPKCSKIVI 161


>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich,
           protein-liand complex, hydrolase; HET: DCP DDN; 1.67A
           {Streptococcus mutans} PDB: 2hvv_A*
          Length = 184

 Score = 78.6 bits (193), Expect = 2e-15
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 34/154 (22%)

Query: 5   SFDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTA---------------- 48
           S+   FM+ A   S+     T     V  ++VK+  +I  G                   
Sbjct: 40  SWQDYFMANAELISKRS---TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEME 96

Query: 49  ---YGGCPHAEVQALEEAGEE---ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVV 102
                   HAE+ AL +  +E   A     YVT  PC +      C + +++ G++++  
Sbjct: 97  DGHCIRTVHAEMNALIQCAKEGISANNTEIYVTHFPCIN------CTKALLQAGVKKITY 150

Query: 103 CVDDPDVRVSGRGLQWLSQKGIIVDRMMESEGKI 136
                   +    ++ ++QK +   +      K+
Sbjct: 151 NTAYR---IHPFAIELMTQKEVEYVQHDVPRVKL 181


>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer,
           zinc, metalloenzyme, structural genomics, PSI, protein
           structure initiative; 2.03A {Escherichia coli} SCOP:
           c.97.1.2
          Length = 168

 Score = 74.1 bits (181), Expect = 4e-14
 Identities = 32/163 (19%), Positives = 49/163 (30%), Gaps = 11/163 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              +M  AL  ++           V  ++V +  VIG G     G       A   A  +
Sbjct: 9   HEYWMRHALTLAK--RAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQ 66

Query: 67  ARGATAYVTLEPCSHY---GRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
                    L   + Y        CA  +I   I RVV    D     +G  +  L   G
Sbjct: 67  GGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPG 126

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +     I + ++  E    L  +  R   +      K   S D
Sbjct: 127 MNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 168


>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein,
           translation, tRNA processing, hydrolase, structural
           genomics; 2.80A {Homo sapiens}
          Length = 189

 Score = 73.6 bits (180), Expect = 6e-14
 Identities = 32/171 (18%), Positives = 55/171 (32%), Gaps = 30/171 (17%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGC----PHAEVQALEE 62
             ++M  A+  ++    L +T   V CL+V +  V+G+G            HAE+ A+++
Sbjct: 26  TEKWMEEAMHMAK--EALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQ 83

Query: 63  AG-----------EEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRV 111
                        E       YVT+EPC        CA  +    I  VV    +     
Sbjct: 84  VLDWCRQSGKSPSEVFEHTVLYVTVEPC------IMCAAALRLMKIPLVVYGCQNERFGG 137

Query: 112 SGRGLQWLSQKGI-------IVDRMMESEGKIFLHAYLTRQVEKRSHITLK 155
            G  L   S            +      E    L  +  ++        ++
Sbjct: 138 CGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSKVR 188


>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A
           {Streptococcus pyogenes serotype M6}
          Length = 179

 Score = 73.3 bits (179), Expect = 9e-14
 Identities = 32/163 (19%), Positives = 53/163 (32%), Gaps = 10/163 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              FM  AL+ S     L      + C+IVKDG +IGRG  A      A + A   A  E
Sbjct: 16  QTYFMQEALKESE--KSLQKAEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINE 73

Query: 67  ARGATAYVTLE---PCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           A        L              C+  I    I  V+    +          Q L+ + 
Sbjct: 74  ANAHEGNWRLLDTTLFVTIEPCVMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDER 133

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQD 161
           +     +   ++ ++    +  +  +  E++      I    D
Sbjct: 134 LNHRVQVERGLLAADCANIMQTFFRQGRERKKIAKHLIKEQSD 176


>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP:
           c.97.1.2
          Length = 171

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 35/167 (20%), Positives = 58/167 (34%), Gaps = 26/167 (15%)

Query: 1   MPVSS--FDARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRG----VTAYGGCPH 54
           +P  S      F+  ALR ++           V  +IVK+G +I +             H
Sbjct: 15  VPRGSHMGKEYFLKVALREAK--RAFEKGEVPVGAIIVKEGEIISKAHNSVEELKDPTAH 72

Query: 55  AEVQALEEAGEEA-----RGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDV 109
           AE+ A++EA          G   YVTLEPC        C+  ++   I +V+    D   
Sbjct: 73  AEMLAIKEACRRLNTKYLEGCELYVTLEPC------IMCSYALVLSRIEKVIFSALDKKH 126

Query: 110 RVSGRGLQWLSQK----GIIVDRMMESEGKIFLHAYLTRQVEKRSHI 152
                    L +      +  +     E    L  +  +    R++I
Sbjct: 127 GGVVSVFNILDEPTLNHRVKWEYYPLEEASELLSEFFKK---LRNNI 170


>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily,
           substrate specificity, structural plasticity, hydrolase;
           1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
          Length = 164

 Score = 68.3 bits (166), Expect = 3e-12
 Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 16/125 (12%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGV----TAYGGCPHAEVQALEE 62
              F+  A+  +   V      P    +IVKDG +I  G     T+     HAEV A+ +
Sbjct: 11  HETFLKRAVTLACEGVNAGIGGP-FGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRK 69

Query: 63  AGE-----EARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQ 117
           A +     +      Y + EPC      P C   I     + V    +  D   +G    
Sbjct: 70  ACKVLGAYQLDDCILYTSCEPC------PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDS 123

Query: 118 WLSQK 122
           ++ ++
Sbjct: 124 FIYKE 128


>3jtw_A Dihydrofolate reductase; YP_805003.1, structural genomics, joint
           center for structural genomics, JCSG; 1.90A {Pediococcus
           pentosaceus atcc 25745}
          Length = 178

 Score = 67.6 bits (164), Expect = 5e-12
 Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 41/207 (19%)

Query: 152 ITLKIAVSQDNMIGMAGCGSVPITGFIS----KNQVHLLRAQSDAILVGIGTVLADDPEL 207
           + L IA+S DN I         +   +      +    + ++ D +++G  T      +L
Sbjct: 6   VILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKL 65

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINI 267
           +       +                              IVT +           ++ + 
Sbjct: 66  SPEKYVYADR--------------------------QTYIVTSH---------LGEDTDK 90

Query: 268 IYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPS 327
           I    +   +L+  +       + + GGA +    + + L+D+ IL    I +G G    
Sbjct: 91  IKYWKQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQANLIDTYILTTVPIFLGSGI--R 148

Query: 328 PLEEGYLEKNFMCVRRDYFGSDVCLEY 354
             +    +     +        V   Y
Sbjct: 149 LFDRLEEQVPVRLIDVYQKNELVYSIY 175


>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding
           protein; 1.60A {Agrobacterium tumefaciens} SCOP:
           c.97.1.2
          Length = 144

 Score = 65.3 bits (158), Expect = 2e-11
 Identities = 27/121 (22%), Positives = 35/121 (28%), Gaps = 5/121 (4%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
              FM  AL  +R           +  ++V DG VI R              A       
Sbjct: 4   RTHFMELALVEAR--SAGERDEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRM 61

Query: 67  ARGATAYVTLEPCSHYG---RSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
           A  A     L     Y        CA  I    IRR+     DP       G+++ SQ  
Sbjct: 62  ACEALGQERLPGADLYVTLEPCTMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPT 121

Query: 124 I 124
            
Sbjct: 122 C 122


>2gd9_A Hypothetical protein YYAP; 2636623, structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI; 2.30A {Bacillus subtilis}
          Length = 189

 Score = 61.0 bits (147), Expect = 4e-10
 Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 30/209 (14%)

Query: 142 LTRQVEKRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVL 201
           +T  +++R  I L +AV+ D  I                     L  Q D IL G  +  
Sbjct: 2   MTNNLKQRR-IILDLAVTLDGFIEGKNGEVDWCIMDPDMGFTDFLN-QIDTILYGRKSFD 59

Query: 202 ADDPELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFR 261
                +    +       +  ++                      + +   +        
Sbjct: 60  LWGQYIPKNEDP-DTEKELWKLVHSK----------------KKYVFSRTQNE------- 95

Query: 262 KKNINIIYCDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIG 321
               N       ++ + +  L       + + GGA++  +FIN  LVD   L    +V+G
Sbjct: 96  --IDNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSIHPVVLG 153

Query: 322 EGGIPSPLEEGYLEKNFMCVRRDYFGSDV 350
           EG       +     N   V    F S V
Sbjct: 154 EG--KPLFIDVKQRINLKMVNTRTFSSGV 180


>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN;
           2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
          Length = 193

 Score = 58.1 bits (139), Expect = 3e-09
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 11/90 (12%)

Query: 47  TAYGGCPHAEVQALEEA---GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVC 103
            +     HAE+ A+  A   G    GAT YVTL PC        CA+ I + GI+++V C
Sbjct: 97  WSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPCPD------CAKAIAQSGIKKLVYC 150

Query: 104 VDDPDVRVSGRGLQWLSQKGIIVDRMMESE 133
                 +     +  L   GI V  + +  
Sbjct: 151 ETYDKNKPGWDDI--LRNAGIEVFNVPKKN 178



 Score = 34.9 bits (79), Expect = 0.027
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 7  DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEE 66
           +  +  A   S+        +  V  +I K+G +I  G   Y G P   V   + A E+
Sbjct: 3  ASTVLQIAYLVSQES---KCCSWKVGAVIEKNGRIISTG---YNGSPAGGVNCCDYAAEQ 56

Query: 67 AR 68
            
Sbjct: 57 GW 58


>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex,
           RNA stem-loop, hydrolase/RNA complex; HET: P5P; 2.00A
           {Staphylococcus aureus subsp} SCOP: c.97.1.2
          Length = 159

 Score = 58.0 bits (139), Expect = 4e-09
 Identities = 28/151 (18%), Positives = 44/151 (29%), Gaps = 10/151 (6%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQA---LEEA 63
           D  FM+ A+  ++           +  +I KD  VI R              A     E 
Sbjct: 7   DIYFMTLAIEEAK--KAAQLGEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIER 64

Query: 64  GEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVSGRGLQWLSQKG 123
             +  G+                 CA  I+   I RVV   DDP    SG  +  L Q  
Sbjct: 65  AAKVLGSWRLEGCTLYVTLEPCVMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSN 124

Query: 124 I-----IVDRMMESEGKIFLHAYLTRQVEKR 149
                 +   +++      L  +       +
Sbjct: 125 FNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155


>2g84_A Cytidine and deoxycytidylate deaminase zinc- binding region;
           structural genomics, PSI, protein structure initiative;
           1.40A {Nitrosomonas europaea atcc 19718} SCOP: c.97.1.2
          Length = 197

 Score = 56.3 bits (135), Expect = 1e-08
 Identities = 32/164 (19%), Positives = 48/164 (29%), Gaps = 33/164 (20%)

Query: 7   DARFMSAALRFSRWHVGLTSTNPSVACLIVK--DGIVIGRGV--TAYGGCP--HAEVQAL 60
               M   L   R    + +     A  + +   G++I  G      G C   HAE+ AL
Sbjct: 28  PEARMGYVLELVR--ANIAADGGPFAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILAL 85

Query: 61  EEAGEE----------ARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVR 110
             A  +                  + EPC        C   +I  G+R +V      DV 
Sbjct: 86  SLAQAKLDTHDLSADGLPACELVTSAEPC------VMCFGAVIWSGVRSLVCAARSDDVE 139

Query: 111 VSG--------RGLQWLSQKGIIVDR-MMESEGKIFLHAYLTRQ 145
             G          +  L  +GI V   ++       L  Y    
Sbjct: 140 AIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183


>3ky8_A Putative riboflavin biosynthesis protein; structural genomics,
           joint center for structural genomics, JCSG, protein
           structure initiative; HET: MSE UNL; 2.12A {Shewanella
           loihica}
          Length = 197

 Score = 52.5 bits (125), Expect = 1e-07
 Identities = 30/203 (14%), Positives = 64/203 (31%), Gaps = 41/203 (20%)

Query: 154 LKIAVSQDNMIGMAGCGSVPITGFISKNQVHL----LRAQSDAILVGIGTVLADDPELTC 209
           + IA S D  I         +    + N V      L  + D +++G  T+         
Sbjct: 24  VFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLDMVLS---- 79

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
                    P+ ++ +   ++    +         V +V                     
Sbjct: 80  FDCDWPYSKPVFVLSNTMTEVPQGYE-------DKVFLVKG------------------- 113

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEGGIPSPL 329
                L  ++  L  +G   L +  G     +F+   L+D +++ R  I++G GG+P   
Sbjct: 114 ----KLVDIIADLNAKGFNELYI-DGGVTIQNFLKEDLIDEMVITRFPILLG-GGVPL-F 166

Query: 330 EEGYLEKNFMCVRRDYFGSDVCL 352
            E     +F  ++ +     +  
Sbjct: 167 GELESSLSFNVIKSEVVLDSLTQ 189


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 74/460 (16%), Positives = 120/460 (26%), Gaps = 205/460 (44%)

Query: 11  MSAALRFSRWHVGLTSTNPSVACLIVKDG-IVIGRGV-TAYGGCPHAEV------QALEE 62
           M A            ST P    L +  G +     V TA      A        + L E
Sbjct: 1   MDAY-----------STRP----LTLSHGSLEHVLLVPTASF--FIASQLQEQFNKILPE 43

Query: 63  AGEEARGATAYVTLEPCSHYGRSPP--CAQFIIECG--IRRVVVCVDDPDVRVSGRGLQW 118
             E           EP      +P     +F+   G     V    +   V    + L  
Sbjct: 44  PTEGFAA-----DDEP-----TTPAELVGKFL---GYVSSLV----EPSKVGQFDQVLN- 85

Query: 119 LSQKGIIVDRMMESEGKIFL-----HAYLTR-------QVEKRSHITLK-----IAVSQD 161
                + +    E+    +L     HA   +        + K   + +K       +++ 
Sbjct: 86  -----LCLTEF-ENC---YLEGNDIHALAAKLLQENDTTLVKTKEL-IKNYITARIMAKR 135

Query: 162 NMIGMAGCGSVPITGFISKNQVH-LLRAQSD------AILVGIGTV------LAD----- 203
                             K     L RA  +      AI  G G        L D     
Sbjct: 136 P---------------FDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180

Query: 204 ----DP---ELTCRLNGLQEHSPMRIILDPHFKLSLDSKIIK----------TALL--AP 244
                         L+ L   + +    +  F   L+  I++             L   P
Sbjct: 181 HVLVGDLIKFSAETLSELIR-TTLDA--EKVFTQGLN--ILEWLENPSNTPDKDYLLSIP 235

Query: 245 V---IIVTENDDPVLALAFRKKNINIIYC-DCRDLKK----LLTILVGRGVT--S--LLV 292
           +   +I       V+ LA         Y    + L      L + L  +G T  S  L+ 
Sbjct: 236 ISCPLI------GVIQLAH--------YVVTAKLLGFTPGELRSYL--KGATGHSQGLVT 279

Query: 293 EGGAAVA-----HSFI-NSRLVDSI---ILYRSQ-----------IV---IGEG-GIPSP 328
               A+A      SF  + R   ++   I  R             I+   +    G+PSP
Sbjct: 280 --AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337

Query: 329 LEEGYLEKNFM-CVR---RDYFGSDVCLEYIGK-NLCLQE 363
                     M  +    +     +   +Y+ K N  L  
Sbjct: 338 ----------MLSISNLTQ-----EQVQDYVNKTNSHLPA 362


>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase
           and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4
           c.1.2.4 PDB: 1jcm_P*
          Length = 452

 Score = 30.2 bits (68), Expect = 0.65
 Identities = 18/134 (13%), Positives = 39/134 (29%), Gaps = 30/134 (22%)

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR--LNGLQEHSPMR------------ 221
           G  +  QV  L   ++  L+G   +  DD     R  L G  +   +             
Sbjct: 216 GINTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG 275

Query: 222 -----IILDP----HFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY--- 269
                +I          +    +++  A L  V +   +D   +    +  ++  +    
Sbjct: 276 AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLHG 335

Query: 270 ----CDCRDLKKLL 279
                    L++ L
Sbjct: 336 NEEQLYIDTLREAL 349


>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed
           beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
          Length = 488

 Score = 30.3 bits (68), Expect = 0.76
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 167 AGCGSVPITGFIS-KNQVHLLRAQSDAILVGIGTVLADDPELTCRLNGLQEHSPMRIILD 225
           A    VP + F+  K    LL  +SD   +  G++         +L+  +      I L 
Sbjct: 363 AHGVVVPRSRFLPVKTCSDLLLVKSDLFRLEHGSL---------KLDPSRFGPNPLIKLG 413

Query: 226 PHFK 229
            HFK
Sbjct: 414 SHFK 417


>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase,
           thermophIle; HET: FMN; 1.59A {Thermus thermophilus HB8}
           SCOP: d.90.1.1
          Length = 205

 Score = 29.9 bits (66), Expect = 0.87
 Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 13/170 (7%)

Query: 53  PHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQFIIECGIRRVVVCVDDPDVRVS 112
           P   ++ + EA   A   +A+          R P   + + E    +  V      + + 
Sbjct: 29  PEGLLREILEAALRA--PSAWNLQPWRIVVVRDPATKRALREAAFGQAHVEEAPVVLVLY 86

Query: 113 GRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA----- 167
                 L+    ++   ++ E +      + R          K   S  + I +      
Sbjct: 87  ADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYXXXX 146

Query: 168 ----GCGSVPITGFISKNQVHLLRAQSDAILVGIGTV--LADDPELTCRL 211
               G GSVP+ GF  +    +L   S A +  +  +   A++   + RL
Sbjct: 147 XEAYGLGSVPMLGFDPERVRAILGLPSRAAIPALVALGYPAEEGYPSHRL 196


>3ix7_A Uncharacterized protein TTHA0540; unknown function, structural
           genomics, PSI-2, protein structure initiative; HET: MSE;
           2.15A {Thermus thermophilus HB8}
          Length = 134

 Score = 28.9 bits (64), Expect = 2.0
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 211 LNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIYC 270
           L  L+E +P+ ++       S+D K++  A      +VT  +D  L    R   +  +  
Sbjct: 65  LERLREAAPLEVLETTPKGESVDEKLLFLARDLEAALVT--NDHALLQMARIYGVKALS- 121

Query: 271 DCRDLKKLL 279
             + L + L
Sbjct: 122 -IQALAQAL 129


>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan
           biosynthesis, X-RAY diffraction, riken structural
           genomics/proteomics initiative; 1.80A {Thermus
           thermophilus} SCOP: c.1.2.4
          Length = 254

 Score = 28.5 bits (63), Expect = 2.2
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           G+  K ++  L    DA+L+G   + A D E   R
Sbjct: 216 GYSRKEELKALEGLFDAVLIGTSLMRAPDLEAALR 250


>3pfe_A Succinyl-diaminopimelate desuccinylase; metal binding, merops M20
           familiy, phosphorylase/hydrolase-L structural genomics;
           HET: MSE; 1.50A {Legionella pneumophila subsp}
          Length = 472

 Score = 28.3 bits (62), Expect = 2.9
 Identities = 16/102 (15%), Positives = 33/102 (32%), Gaps = 3/102 (2%)

Query: 26  STNPSVACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRS 85
           S +      ++K+G++ GRG    G   +A + A+    ++       + +        S
Sbjct: 108 SDDLHPWKPVLKNGLLYGRGGADDGYSAYASLTAIRALEQQGLPYPRCILIIEACEESGS 167

Query: 86  PPCAQFIIECGIR---RVVVCVDDPDVRVSGRGLQWLSQKGI 124
                +I     R     +V   D       +     S +G 
Sbjct: 168 YDLPFYIELLKERIGKPSLVICLDSGAGNYEQLWMTTSLRGN 209


>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate synthase,
           structural genomics, joint center for structural
           genomics; HET: MSE; 2.37A {Clostridium acetobutylicum
           atcc 824}
          Length = 354

 Score = 27.9 bits (61), Expect = 3.4
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 10/179 (5%)

Query: 89  AQFIIECGIRRVVVCVDDPDVRVSGRGL-QWLSQKGIIVDRMMESEGKIFLHAYLTRQVE 147
            Q I +   +RV +   +    + G  + + +    I ++ +   +   F     T   +
Sbjct: 26  GQIIKKGNFKRVSLYFGEGIYELFGETIEKSIKSSNIEIEAVETVKNIDFDEIG-TNAFK 84

Query: 148 KRSHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
             + +   I +      G A      +        + +  + S+         L  +   
Sbjct: 85  IPAEVDALIGIG----GGKAIDAVKYMAFLRKLPFISVPTSTSNDGFSSPVASLLING-- 138

Query: 208 TCRLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNIN 266
             +   +   +P  I++D         K I + +   V  +T   D        K  I+
Sbjct: 139 --KRTSVPAKTPDGIVVDIDVIKGSPEKFIYSGIGDLVSNITALYDWKFEEENHKSIID 195


>1se8_A Single-strand binding protein; DNA binding protein; 1.80A
           {Deinococcus radiodurans} SCOP: b.40.4.3
          Length = 301

 Score = 28.1 bits (62), Expect = 3.6
 Identities = 16/100 (16%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 108 DVRVSGRGLQWLSQKGIIVDRMMESEGKIFLHAYLTRQVEKRSHITLKIAVSQDNMIGMA 167
            V + G+  +W +++ +     +  EG +    +   +  KRS   + +   +   +   
Sbjct: 55  RVSILGKPAEWQAERNLKGGDAVVVEGTLEYRQWEAPEGGKRS--AVNVKALRMEQL--- 109

Query: 168 GCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPEL 207
             G+ P     +   V +  A ++ +++G    +  DPE+
Sbjct: 110 --GTQPELIQDAGGGVRMSGAMNEVLVLG---NVTRDPEI 144


>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia
           sepium} SCOP: d.124.1.1
          Length = 212

 Score = 27.8 bits (61), Expect = 3.7
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 3/40 (7%)

Query: 191 DAILVGIGTVLADDPELTCRLNGLQEHSPMRIILDPHFKL 230
           + I+  I + L   P + C+ + +++   ++I  D   +L
Sbjct: 152 EGIMSAIQSALRVTPVVKCKSDAVEQ---VQICFDKTLQL 188


>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate
           decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A
           {Saccharomyces cerevisiae} PDB: 3gdl_A* 3gdk_A* 3gdt_A*
           3gdr_A* 1dqw_A 1dqx_A*
          Length = 267

 Score = 27.7 bits (61), Expect = 4.4
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 38  DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           D I++GRG+ A G     E +   +AG EA
Sbjct: 229 DIIIVGRGLFAKGRDAKVEGERYRKAGWEA 258


>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel
           protein, salt bridges, electrostatic interactions,
           lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB:
           1j5t_A
          Length = 251

 Score = 27.2 bits (60), Expect = 5.2
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 176 GFISKNQVHLLRAQSDAILVGIGTVLADDPELTCR 210
           G     ++  LR + +A+LVG   + A++P     
Sbjct: 210 GIKDPRELKDLRGKVNAVLVGTSIMKAENPRRFLE 244


>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase;
           2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
          Length = 168

 Score = 27.1 bits (59), Expect = 6.0
 Identities = 24/174 (13%), Positives = 45/174 (25%), Gaps = 44/174 (25%)

Query: 150 SHITLKIAVSQDNMIGMAGCGSVPITGFISKNQVHLLRAQSDAILVGIGTVLADDPELTC 209
           + +   +A+     I          + F  +     +  +   +++G  T       L  
Sbjct: 1   AKVIFVLAMDVSGKI---ASSVESWSSFEDRKNFRKITTEIGNVVMGRITFEEIGRPLPE 57

Query: 210 RLNGLQEHSPMRIILDPHFKLSLDSKIIKTALLAPVIIVTENDDPVLALAFRKKNINIIY 269
           RLN +    P                                                  
Sbjct: 58  RLNVVLTRRPKTSNNPSL-----------------------------------------V 76

Query: 270 CDCRDLKKLLTILVGRGVTSLLVEGGAAVAHSFINSRLVDSIILYRSQIVIGEG 323
                   ++  L G+G   + V GG  V   F+  +LVD + +     V G+G
Sbjct: 77  FFNGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDELFVTVEPYVFGKG 130


>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta
           protein, structural genomics, PSI-2, protein structure
           initiative; 2.70A {Porphyromonas gingivalis W83}
          Length = 506

 Score = 26.9 bits (59), Expect = 7.0
 Identities = 9/80 (11%), Positives = 20/80 (25%), Gaps = 1/80 (1%)

Query: 32  ACLIVKDGIVIGRGVTAYGGCPHAEVQALEEAGEEARGATAYVTLEPCSHYGRSPPCAQF 91
           A   V     +G       G P     A+ +    A        +   +           
Sbjct: 11  AAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGV 70

Query: 92  IIECG-IRRVVVCVDDPDVR 110
           + +   ++       + D+R
Sbjct: 71  LAQADAVKFRTPYQSNKDLR 90


>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel,
           unusual catalysis, alternative splicing, disease
           mutation, glycosyltransferase, lyase; HET: U1P; 1.10A
           {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A*
           3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A*
           2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A*
           3ewy_A* 3ewx_A* ...
          Length = 260

 Score = 26.6 bits (58), Expect = 9.2
 Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)

Query: 38  DGIVIGRGVTAYGGCPHAEVQALEEAGEEA 67
           D I++GRG+           +   +A  EA
Sbjct: 225 DIIIVGRGII-SAADRLEAAEMYRKAAWEA 253


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.324    0.140    0.420 

Gapped
Lambda     K      H
   0.267   0.0460    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,232,403
Number of extensions: 154863
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 527
Number of HSP's successfully gapped: 46
Length of query: 364
Length of database: 5,693,230
Length adjustment: 94
Effective length of query: 270
Effective length of database: 3,414,294
Effective search space: 921859380
Effective search space used: 921859380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.4 bits)