HHsearch alignment for GI: 254780349 and conserved domain: COG1104

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.56  E-value=3.4e-12  Score=105.44  Aligned_cols=336  Identities=19%  Similarity=0.225  Sum_probs=216.6

Q ss_pred             CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHHHHHHH----
Q ss_conf             4301029899998305102886579888753360067999999999999987188630100001679-99999998----
Q gi|254780349|r   40 ASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQ-MNQGVFLA----  114 (433)
Q Consensus        40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~-An~av~~A----  114 (433)
T Consensus         8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~-A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a   84 (386)
T COG1104           8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGRE-ARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALA   84 (386)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             3568898999999999987531--896115575799-9999999999999983999780899569847777999864876


Q ss_pred             HHC--CCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE--CCCCCCCCC
Q ss_conf             315--4874881233448411147665433-33322013665832356598999999986046678970--552435363
Q gi|254780349|r  115 LMH--PGDSFMGLSLDSGGHLTHGSSVNMS-GKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG--GTAYSRVWD  189 (433)
Q Consensus       115 Ll~--pGD~Il~~~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G--~S~y~~~~d  189 (433)
T Consensus        85 ~~~~~~~~HIIts~iEH~aVl---~~~~~Le~~g~~Vtyl~v~~-~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQp  159 (386)
T COG1104          85 YRNAQKGKHIITSAIEHPAVL---NTCRYLERQGFEVTYLPVDS-NGLVDLEQLEEALRPD-TILVSIMHANNETGTIQP  159 (386)
T ss_pred             HHCCCCCCEEEECCCCCHHHH---HHHHHHHHCCCEEEEECCCC-CCEECHHHHHHHCCCC-CEEEEEEECCCCEEECCC
T ss_conf             423568985887554349999---99999986697579968888-9728799999863888-459999850268201120


Q ss_pred             HHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCC-CHHHHCC-HHHCHH
Q ss_conf             7999988641797899186201244320001232200--23567404565225674-48983362-0565016-646543
Q gi|254780349|r  190 WERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHA-DLAKKIN-SAIFPG  264 (433)
Q Consensus       190 ~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~-e~~~~i~-~avfPg  264 (433)
T Consensus       160 I~ei~~i~k~~~i~fHvDAvQa~Gki-----pi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g  233 (386)
T COG1104         160 IAEIGEICKERGILFHVDAVQAVGKI-----PIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGVRLEPLIHGGGQERG  233 (386)
T ss_pred             HHHHHHHHHHCCCEEEEEHHHHCCCE-----ECCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCCCCCCCEEECCCCCCC
T ss_conf             99999999975981797613325760-----046021576568731121-369984279998799873744604767899


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC---CCCEEEECCCCCCCCHHHHH
Q ss_conf             -22344556668999999997356489999999988899999986168523-34588---89812631665567679999
Q gi|254780349|r  265 -LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDI-VSGGT---DNHLMLVDLRSKRMTGKRAE  339 (433)
Q Consensus       265 -~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~v-v~ggT---d~H~vlvdl~~~~~~G~~a~  339 (433)
T Consensus       234 ~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f--~gv~gE~ll  310 (386)
T COG1104         234 LRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF--PGVEGESLL  310 (386)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEE--CCCCHHHHH
T ss_conf             78887557999999999999998-778889999999999999998509968986885457898689996--897578999


Q ss_pred             HHHHHCCEEEECCC--CCCCCCC-----------CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             98885671880378--9989999-----------888985122466673079998999999999999960
Q gi|254780349|r  340 SILGRVSITCNKNS--IPFDPES-----------PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILD  396 (433)
Q Consensus       340 ~~Le~~gI~~Nkn~--iP~D~~~-----------~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~  396 (433)
T Consensus       311 ~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt----~eei~~~~~~l~~~i~  376 (386)
T COG1104         311 LALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTT----EEEIDAAAEALKEIIK  376 (386)
T ss_pred             HHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCC----HHHHHHHHHHHHHHHH
T ss_conf             86104086873364345899871499998099968837248997379998----9999999999999999