HHsearch alignment for GI: 254780349 and conserved domain: COG1104
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].
Probab=99.56 E-value=3.4e-12 Score=105.44 Aligned_cols=336 Identities=19% Similarity=0.225 Sum_probs=216.6
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHH-HHHHHHHH----
Q ss_conf 4301029899998305102886579888753360067999999999999987188630100001679-99999998----
Q gi|254780349|r 40 ASENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQ-MNQGVFLA---- 114 (433)
Q Consensus 40 ASEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~-An~av~~A---- 114 (433)
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H~~G~~-A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a 84 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLHSFGRE-ARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALA 84 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 3568898999999999987531--896115575799-9999999999999983999780899569847777999864876
Q ss_pred HHC--CCCEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE--CCCCCCCCC
Q ss_conf 315--4874881233448411147665433-33322013665832356598999999986046678970--552435363
Q gi|254780349|r 115 LMH--PGDSFMGLSLDSGGHLTHGSSVNMS-GKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPKLIIVG--GTAYSRVWD 189 (433)
Q Consensus 115 Ll~--pGD~Il~~~l~~GGHlshg~~~~~~-g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPklIi~G--~S~y~~~~d 189 (433)
T Consensus 85 ~~~~~~~~HIIts~iEH~aVl---~~~~~Le~~g~~Vtyl~v~~-~G~v~~e~L~~al~~~-T~LVSim~aNnE~G~IQp 159 (386)
T COG1104 85 YRNAQKGKHIITSAIEHPAVL---NTCRYLERQGFEVTYLPVDS-NGLVDLEQLEEALRPD-TILVSIMHANNETGTIQP 159 (386)
T ss_pred HHCCCCCCEEEECCCCCHHHH---HHHHHHHHCCCEEEEECCCC-CCEECHHHHHHHCCCC-CEEEEEEECCCCEEECCC
T ss_conf 423568985887554349999---99999986697579968888-9728799999863888-459999850268201120
Q ss_pred HHHHHHHHHHCCCEEEECCCCHHHHHHHHCCCCCCCC--CCEEEECCCCCCCCCCC-EEEEECCC-CHHHHCC-HHHCHH
Q ss_conf 7999988641797899186201244320001232200--23567404565225674-48983362-0565016-646543
Q gi|254780349|r 190 WERFRSIADSIGAYLMADISHISGLVVGGQHPSPVPH--CHIVTTTTHKSLRGPRG-GLIMTNHA-DLAKKIN-SAIFPG 264 (433)
Q Consensus 190 ~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~~Pl~~--ADvvt~sTHKtl~GPrg-GiI~~~~~-e~~~~i~-~avfPg 264 (433)
T Consensus 160 I~ei~~i~k~~~i~fHvDAvQa~Gki-----pi~~~~~~vD~ls~SaHK-~~GpkGiGaLyv~~~~~~~p~i~GGgQE~g 233 (386)
T COG1104 160 IAEIGEICKERGILFHVDAVQAVGKI-----PIDLEELGVDLLSFSAHK-FGGPKGIGALYVRPGVRLEPLIHGGGQERG 233 (386)
T ss_pred HHHHHHHHHHCCCEEEEEHHHHCCCE-----ECCCCCCCCCEEEEEHHH-CCCCCCEEEEEECCCCCCCCEEECCCCCCC
T ss_conf 99999999975981797613325760-----046021576568731121-369984279998799873744604767899
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCCCC---CCCEEEECCCCCCCCHHHHH
Q ss_conf -22344556668999999997356489999999988899999986168523-34588---89812631665567679999
Q gi|254780349|r 265 -LQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDI-VSGGT---DNHLMLVDLRSKRMTGKRAE 339 (433)
Q Consensus 265 -~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~v-v~ggT---d~H~vlvdl~~~~~~G~~a~ 339 (433)
T Consensus 234 ~RsGTenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f--~gv~gE~ll 310 (386)
T COG1104 234 LRSGTENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSF--PGVEGESLL 310 (386)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEE--CCCCHHHHH
T ss_conf 78887557999999999999998-778889999999999999998509968986885457898689996--897578999
Q ss_pred HHHHHCCEEEECCC--CCCCCCC-----------CCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98885671880378--9989999-----------888985122466673079998999999999999960
Q gi|254780349|r 340 SILGRVSITCNKNS--IPFDPES-----------PFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQILD 396 (433)
Q Consensus 340 ~~Le~~gI~~Nkn~--iP~D~~~-----------~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~ 396 (433)
T Consensus 311 ~~L~~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt----~eei~~~~~~l~~~i~ 376 (386)
T COG1104 311 LALDLAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTT----EEEIDAAAEALKEIIK 376 (386)
T ss_pred HHCCCCCEEEECCCCCCCCCCCCCHHHHHCCCCHHHHCCCEEEECCCCCC----HHHHHHHHHHHHHHHH
T ss_conf 86104086873364345899871499998099968837248997379998----9999999999999999