HHsearch alignment for GI: 254780349 and conserved domain: COG3033
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism].
Probab=99.37 E-value=1.5e-09 Score=86.97 Aligned_cols=323 Identities=17% Similarity=0.227 Sum_probs=214.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCCCCCC-----
Q ss_conf 888753360067999999999999987188630100001679999999983154874881--2334484111476-----
Q gi|254780349|r 65 YPSKRYYGGCQYVDDIENIAIERAKKLFNVNFVNVQSHSGSQMNQGVFLALMHPGDSFMG--LSLDSGGHLTHGS----- 137 (433)
Q Consensus 65 ~pg~ryy~G~~~~d~iE~la~~~a~~lF~a~~anvqp~SG~~An~av~~ALl~pGD~Il~--~~l~~GGHlshg~----- 137 (433)
T Consensus 69 m~GDEAYagsrs~~~L----~~avkdifGfq~~iP-thQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~h~~~ 143 (471)
T COG3033 69 MRGDEAYAGSRSYYAL----ADAVKDIFGFQYTIP-THQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRGHIQI 143 (471)
T ss_pred HCCCHHHCCCCCHHHH----HHHHHHHCCCEEEEE-CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCHHHHHHH
T ss_conf 5253543155338999----999998617346512-55773177788999841032067741012345312022677875
Q ss_pred ----CCCCC--CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC---EEEE---ECCCCCCCC---CHHHHHHHHHHCCC
Q ss_conf ----65433--333220136658323565989999999860466---7897---055243536---37999988641797
Q gi|254780349|r 138 ----SVNMS--GKWFKAIPYNVRKEDGLLDMHEIESLAIEYNPK---LIIV---GGTAYSRVW---DWERFRSIADSIGA 202 (433)
Q Consensus 138 ----~~~~~--g~~~~~~~y~~d~~~~~ID~d~~~~~a~~~kPk---lIi~---G~S~y~~~~---d~~~l~eIa~~~ga 202 (433)
T Consensus 144 ng~~~~n~~~~ea~d~~~~~pF---KGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~i 220 (471)
T COG3033 144 NGATPRNVYVDEAFDTEVKYPF---KGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDI 220 (471)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 4870212316655664556887---7865799999999873714586899999626667871207769999999987199
Q ss_pred EEEECCCCHHH---HHHH-----------HCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCC---HHHHCCH-----H
Q ss_conf 89918620124---4320-----------00123220023567404565225674489833620---5650166-----4
Q gi|254780349|r 203 YLMADISHISG---LVVG-----------GQHPSPVPHCHIVTTTTHKSLRGPRGGLIMTNHAD---LAKKINS-----A 260 (433)
Q Consensus 203 ~l~~D~aH~~G---LIa~-----------g~~~~Pl~~ADvvt~sTHKtl~GPrgGiI~~~~~e---~~~~i~~-----a 260 (433)
T Consensus 221 pvv~Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~e 300 (471)
T COG3033 221 PVVMDAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMGGFLCFKDDSFFDVYEECRTLVVVQE 300 (471)
T ss_pred CEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCEECCCCEEEECCCCHHHHHHHHHHHEEEEC
T ss_conf 58964456654202234247655546099999999865124302025452422465788647507789999876657512
Q ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCC-------CC
Q ss_conf 65432234455666899999999735648999999998889999998616852334588898126316655-------67
Q gi|254780349|r 261 IFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLMLVDLRSK-------RM 333 (433)
Q Consensus 261 vfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd~H~vlvdl~~~-------~~ 333 (433)
T Consensus 301 G~~tY-Ggl~GrdmealAvGL~e~~~~~yl~---~Rv~Qv~YL~~~l~~~GVpi~~-paGGHavfvda~~~lphip~eqF 375 (471)
T COG3033 301 GFPTY-GGLAGRDMEALAVGLREGVNFDYLA---HRVAQVQYLADGLEEAGVPIVQ-PAGGHAVFVDAGKFLPHIPAEQF 375 (471)
T ss_pred CCCCC-CCCCCHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHCCCEEEE-CCCCCEEEEEHHHHCCCCCHHHC
T ss_conf 66665-7644232899997888742708999---9999999999888865973685-27871699634563677882448
Q ss_pred CHHH-HHHHHHHCCEEEE---CCCCCCCCCCCCCC----CCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6799-9998885671880---37899899998889----851224666730799989999999999999602577621
Q gi|254780349|r 334 TGKR-AESILGRVSITCN---KNSIPFDPESPFIT----SGIRLGTPSGTTRGFKEKDFEYIGELIAQILDGSSSDEE 403 (433)
Q Consensus 334 ~G~~-a~~~Le~~gI~~N---kn~iP~D~~~~~~~----sGiRlGT~aiTtrG~~e~em~~iA~li~~~L~~~~~~~~ 403 (433)
T Consensus 376 paqala~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRlt---ipRrtYt~~HmD~V~~a~~~l~e~~~~ikg 450 (471)
T COG3033 376 PAQALACELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLT---IPRRTYTQTHMDFVIEAFKALKENAEDIKG 450 (471)
T ss_pred CHHHHHHHHHHHHCEEEEEEECEECCCCCCCCCCCCCCHHEEEEE---CCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 477899999998382366420111155877643478712304674---351114566799999999999854246888