HHsearch alignment for GI: 254780349 and conserved domain: COG3977
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism].
Probab=91.84 E-value=1.2 Score=25.05 Aligned_cols=284 Identities=16% Similarity=0.187 Sum_probs=142.8
Q ss_pred CCCCHHHHH-HHHHHHHHHHHHCCC--CCEECCCHHHHHHHHHHHHHH----HCCCCE---EEECCCCCCCCCCCCCCCC
Q ss_conf 360067999-999999999987188--630100001679999999983----154874---8812334484111476654
Q gi|254780349|r 71 YGGCQYVDD-IENIAIERAKKLFNV--NFVNVQSHSGSQMNQGVFLAL----MHPGDS---FMGLSLDSGGHLTHGSSVN 140 (433)
Q Consensus 71 y~G~~~~d~-iE~la~~~a~~lF~a--~~anvqp~SG~~An~av~~AL----l~pGD~---Il~~~l~~GGHlshg~~~~ 140 (433)
T Consensus 70 Y~~pQG~~~li~ala~-~l~~~yGwnit~~NIalTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d----~~ 144 (417)
T COG3977 70 YDGPQGKAVLIDALAK-MLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD----AG 144 (417)
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCHHHCCCCC----CC
T ss_conf 8997641699999999-998975787664415632786115889988754766798510466436834326554----46
Q ss_pred CCCCCCCCCCC-----CCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCC-----CCCCHHHHHHHHHHCCCEEEECCCC
Q ss_conf 33333220136-----6583235659899999998604667897055243-----5363799998864179789918620
Q gi|254780349|r 141 MSGKWFKAIPY-----NVRKEDGLLDMHEIESLAIEYNPKLIIVGGTAYS-----RVWDWERFRSIADSIGAYLMADISH 210 (433)
Q Consensus 141 ~~g~~~~~~~y-----~~d~~~~~ID~d~~~~~a~~~kPklIi~G~S~y~-----~~~d~~~l~eIa~~~ga~l~~D~aH 210 (433)
T Consensus 145 l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i~---e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAY 221 (417)
T COG3977 145 LEEDLFVSAKPNIELLPAGQFKYHVDFEHLHIG---ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAY 221 (417)
T ss_pred CCCCCEEECCCCCCCCCCCCEEECCCHHHHCCC---CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 572123552687532666662213778881336---76026996478898877364889998998742238967973566
Q ss_pred HH---HHHHHHCCCCCCCCCC-EEEECCCC-CCCCCCCEEEEECCCCHHHHCCH-----HHCHHHHHHHHHHHHHH---H
Q ss_conf 12---4432000123220023-56740456-52256744898336205650166-----46543223445566689---9
Q gi|254780349|r 211 IS---GLVVGGQHPSPVPHCH-IVTTTTHK-SLRGPRGGLIMTNHADLAKKINS-----AIFPGLQGGPFMHSIAA---K 277 (433)
Q Consensus 211 ~~---GLIa~g~~~~Pl~~AD-vvt~sTHK-tl~GPrgGiI~~~~~e~~~~i~~-----avfPg~qg~~~~~~iaa---~ 277 (433)
T Consensus 222 g~PFP~iifsd~--~~~w~~NiilC~SLSK~GLPG~R~GIiIane-~viqaitnmn~iisLap~~~G~Aiaa~mie~gdl 298 (417)
T COG3977 222 GVPFPGIIFSDA--TPLWNENIILCMSLSKLGLPGSRCGIIIANE-KVIQAITNMNGIISLAPGRMGPAIAAEMIESGDL 298 (417)
T ss_pred CCCCCCEECCCC--CCCCCCCEEEEEEHHHCCCCCCEEEEEECCH-HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHH
T ss_conf 799786200356--4156787788831433489873035796269-9999997114535316787568999988602428
Q ss_pred HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE-ECCCCCCCCHHHHHHHHHHCCEEEE--CCCC
Q ss_conf 999999735648999999998889999998616852334588898126-3166556767999998885671880--3789
Q gi|254780349|r 278 AVAFGEALSSEFRDYAKQIVLNSQALAKKLQFLGFDIVSGGTDNHLML-VDLRSKRMTGKRAESILGRVSITCN--KNSI 354 (433)
Q Consensus 278 aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~G~~vv~ggTd~H~vl-vdl~~~~~~G~~a~~~Le~~gI~~N--kn~i 354 (433)
T Consensus 299 ~rlseqVIrPFY~~~~q~~~---~~l~~~lp~~~~~iHk--pEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FF 373 (417)
T COG3977 299 LRLSEQVIRPFYRNRVQTTI---AILRRYLPEYRCLIHK--PEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFF 373 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHCCCCCEEEEC--CCCCEEEHHHHCCCCCCHHHHHHHHHHCEEEEECCCCCC
T ss_conf 88999864388898899999---9999865776525426--875154133553587668999999986868994463247
Q ss_pred CCCCCC-CCCCCCCCCC
Q ss_conf 989999-8889851224
Q gi|254780349|r 355 PFDPES-PFITSGIRLG 370 (433)
Q Consensus 355 P~D~~~-~~~~sGiRlG 370 (433)
T Consensus 374 pGl~~ewpH~hqC~Rmn 390 (417)
T COG3977 374 PGLDKEWPHTHQCMRMN 390 (417)
T ss_pred CCCCCCCCCCCCEEEEE
T ss_conf 89998887612247875