HHsearch alignment for GI: 254780349 and conserved domain: PRK01278

>PRK01278 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Provisional.
Probab=98.55  E-value=3e-05  Score=57.07  Aligned_cols=266  Identities=16%  Similarity=0.193  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHHHHHH-------CCC-CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC---CHHHHHHHH
Q ss_conf             016799999999831-------548-74881233448411147665433333220136-658323565---989999999
Q gi|254780349|r  102 HSGSQMNQGVFLALM-------HPG-DSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPY-NVRKEDGLL---DMHEIESLA  169 (433)
Q Consensus       102 ~SG~~An~av~~ALl-------~pG-D~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y-~~d~~~~~I---D~d~~~~~a  169 (433)
T Consensus        95 ~sGsEAve~AlklAr~~~~~~g~t~r~~ii~~~~~yHG~t-~-~~~s~sg~~~~~~~~~p~~~~~~~~~~~d~~~l~~~~  172 (389)
T PRK01278         95 NSGAEAVECAIKTARRYQYGKGHPERYRIITFEGAFHGRT-L-ATIAATGQEKYLEGFGPLVDGFDQVPFGDIEALKAAI  172 (389)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCC-C-CCCCCCCCHHHCCCCCCCCCCEEECCCCCHHHHHHHH
T ss_conf             8748999999999999888539999728999888888676-3-5113578844336668998882467789789999862


Q ss_pred             HHHCCCEEEEEC------CCCCCCCCHHHHHHHHHHCCCEEEECCCCHHHH-HHHHCCCCC-CCC-CCEEEECCCCCCCC
Q ss_conf             860466789705------524353637999988641797899186201244-320001232-200-23567404565225
Q gi|254780349|r  170 IEYNPKLIIVGG------TAYSRVWDWERFRSIADSIGAYLMADISHISGL-VVGGQHPSP-VPH-CHIVTTTTHKSLRG  240 (433)
Q Consensus       170 ~~~kPklIi~G~------S~y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GL-Ia~g~~~~P-l~~-ADvvt~sTHKtl~G  240 (433)
T Consensus       173 ~~-~iAaviiEPi~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEV~t-GfGRtG~~fa~e~~gv~PDiv~~g--K~l~g  248 (389)
T PRK01278        173 TP-NTAAILIEPIQGEGGIRPLPDEFLKGLRQLCDENGLLLIFDEVQC-GVGRTGKLFAHEWAGVTPDIMALA--KGIGG  248 (389)
T ss_pred             CC-CCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEEC-CCCCCCCCCHHHCCCCCCCEEEEC--CCCCC
T ss_conf             88-817999968888889606999999999999986065387421000-777556642200367689867870--12468


Q ss_pred             --CCCEEEEECCCCHHHHCCHHHCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC--CCC-CC
Q ss_conf             --6744898336205650166465432234455666899999999735648999999998889999998616--852-33
Q gi|254780349|r  241 --PRGGLIMTNHADLAKKINSAIFPGLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL--GFD-IV  315 (433)
Q Consensus       241 --PrgGiI~~~~~e~~~~i~~avfPg~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~--G~~-vv  315 (433)
T Consensus       249 G~P~sav~~~-~-ei~~~~~~g~~~~T~~gnp~~~aaala~L--~~i~~--~~l~~~v~~~G~~l~~~L~~l~~~~p~~i  322 (389)
T PRK01278        249 GFPLGACLAT-E-EAAKGMTPGTHGSTYGGNPLAMAVGNAVL--DVVLA--PGFLDNVQKMGLYLKQKLESLVDRFPDVI  322 (389)
T ss_pred             CCCEEEEEEC-H-HHHHHCCCCCCCCCCCCCHHHHHHHHHHH--HHHHH--CCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf             8742799863-8-87854368876779997999999999999--99986--46999999999999999999987686713


Q ss_pred             CCCCCCCEEE-ECCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf             4588898126-316655676799999888567188037899899998889851224666730799989999999999999
Q gi|254780349|r  316 SGGTDNHLML-VDLRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIAQI  394 (433)
Q Consensus       316 ~ggTd~H~vl-vdl~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~~~  394 (433)
T Consensus       323 ~~vRG~Gl~~gie~~~---~~~~i~~~~~~~Gll~~----~~g------~~~lr~~-PpL~---it~~ei~~~~~~l~~a  385 (389)
T PRK01278        323 EEVRGEGLMLGLKCVV---PSRDLVAALRDEGLLTV----PAG------DNVVRLL-PPLI---ITEEEIDEALERLERA  385 (389)
T ss_pred             EEEEEEEEEEEEEECC---CHHHHHHHHHHCCCEEE----ECC------CCEEEEE-CCCC---CCHHHHHHHHHHHHHH
T ss_conf             5564503699999458---89999999997993897----279------9979997-8813---9899999999999999


Q ss_pred             HH
Q ss_conf             60
Q gi|254780349|r  395 LD  396 (433)
Q Consensus       395 L~  396 (433)
T Consensus       386 l~  387 (389)
T PRK01278        386 AE  387 (389)
T ss_pred             HH
T ss_conf             97