HHsearch alignment for GI: 254780349 and conserved domain: PRK09331
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional.
Probab=99.71 E-value=5.2e-15 Score=125.00 Aligned_cols=327 Identities=19% Similarity=0.262 Sum_probs=222.3
Q ss_pred HHHHCCCCCC--CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----HHHHHHHCCCCCEECCCHHH
Q ss_conf 9983888104--30102989999830510288657988875336006799999999----99999871886301000016
Q gi|254780349|r 31 RQNDEIQLIA--SENIVSRAVLEAQGSILTNKYAEGYPSKRYYGGCQYVDDIENIA----IERAKKLFNVNFVNVQSHSG 104 (433)
Q Consensus 31 rq~~~l~LiA--SEN~~S~~v~~~l~S~l~nkyaeG~pg~ryy~G~~~~d~iE~la----~~~a~~lF~a~~anvqp~SG 104 (433)
T Consensus 15 ~~~~~in~~piq~gg~lt~ea~ka~~~-----~gdgysvcd~C~~--~LD~i~~Ppi~~f~~~la~flg~D~~--rlvnG 85 (386)
T PRK09331 15 LEEEMINLDPIQRGGRLTPEARKALIE-----YGDGYSVCDYCKG--RLDKIEKPPIADFHEDLAKFLGMDEA--RVTPG 85 (386)
T ss_pred HHHCCCCCCHHHHCCCCCHHHHHHHHH-----HCCCCCHHHHHCC--HHHCCCCCCHHHHHHHHHHHHCCCEE--EECCC
T ss_conf 023133567355269689999999999-----7488736645411--01125599889999999998499637--85288
Q ss_pred HH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH----HHHHHHHHHH--CCCEE
Q ss_conf 79-99999998315487488123344841114766543333322013665832356598----9999999860--46678
Q gi|254780349|r 105 SQ-MNQGVFLALMHPGDSFMGLSLDSGGHLTHGSSVNMSGKWFKAIPYNVRKEDGLLDM----HEIESLAIEY--NPKLI 177 (433)
Q Consensus 105 ~~-An~av~~ALl~pGD~Il~~~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~----d~~~~~a~~~--kPklI 177 (433)
T Consensus 86 ar~g~qAv~~a~c~~GD~VIl~rn---aHyS~~~A~elaG~~~~~v~~~~~~~-~~I~~~~~~~~Iee~~~e~gk~~aL~ 161 (386)
T PRK09331 86 AREGKFAVMHALCKKGDYVVLDGL---AHYTSYVAAERAGLNVREVPKTGYPD-YRITPEAYAEKIEEVEDETGKPPALA 161 (386)
T ss_pred CCHHHHHHHHHHHCCCCEEEECCC---CHHHHHHHHHHCCCEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 427899999986369997984484---05999999997598589936877723-45080057999999998618985599
Q ss_pred EEECCC--CCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHCCC-CCCCC-CCEEEECCCCCCCCC-CCEEEEECCCC
Q ss_conf 970552--43536379999886417978991862012443200012-32200-235674045652256-74489833620
Q gi|254780349|r 178 IVGGTA--YSRVWDWERFRSIADSIGAYLMADISHISGLVVGGQHP-SPVPH-CHIVTTTTHKSLRGP-RGGLIMTNHAD 252 (433)
Q Consensus 178 i~G~S~--y~~~~d~~~l~eIa~~~ga~l~~D~aH~~GLIa~g~~~-~Pl~~-ADvvt~sTHKtl~GP-rgGiI~~~~~e 252 (433)
T Consensus 162 llt~pdy~yGn~~d~~~i~~iah~~~ip~lvdeA~~~~~-----~P~~a~~~GaD~~v~S~HK~~~s~t~sgvL~~~~-e 235 (386)
T PRK09331 162 LLTHVDGNYGNLHDAKKIAKVAHQYGIPLLLNGAYTVGR-----MPVDGKELGADFIVGSGHKSMAASAPSGVLATTE-E 235 (386)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCC-----CCCCHHHCCCCEEEEECCCCCCCCCCCEEEECCC-C
T ss_conf 996888664454638999999987498189814433577-----8974666399889863454442346312443045-3
Q ss_pred HHHHCCHH--HCH---------HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCC
Q ss_conf 56501664--654---------32234455666899999999735648999999998889999998616-8523345888
Q gi|254780349|r 253 LAKKINSA--IFP---------GLQGGPFMHSIAAKAVAFGEALSSEFRDYAKQIVLNSQALAKKLQFL-GFDIVSGGTD 320 (433)
Q Consensus 253 ~~~~i~~a--vfP---------g~qg~~~~~~iaa~aval~Ea~~~~f~~Ya~qvv~NA~~La~~L~~~-G~~vv~ggTd 320 (433)
T Consensus 236 ~~d~v~R~s~~~~~Kev~mLgcTs~g~psy~LMASfd~vrerv~--~~----d~ev~~ar~~~~El~kIeG~~~lge~P~ 309 (386)
T PRK09331 236 YADKVFRTSKKFGVKEVELLGCTLRGAPLVTLMASFPHVKERVK--NW----DEEVEKARWFVDELEKIEGFKQLGEKPR 309 (386)
T ss_pred HHHHHHHCCCCCHHHHHHHHCCCCCCCHHHHHHHCCHHHHHHHH--HH----HHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 01556522643057899885363346408999806599999998--77----8999999999999860876554065778
Q ss_pred CCEEE-EC-------CCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 98126-31-------66556767999998885671880378998999988898512246667307999899999999999
Q gi|254780349|r 321 NHLML-VD-------LRSKRMTGKRAESILGRVSITCNKNSIPFDPESPFITSGIRLGTPSGTTRGFKEKDFEYIGELIA 392 (433)
Q Consensus 321 ~H~vl-vd-------l~~~~~~G~~a~~~Le~~gI~~Nkn~iP~D~~~~~~~sGiRlGT~aiTtrG~~e~em~~iA~li~ 392 (433)
T Consensus 310 ~hdl~~fdtt~~~~ia~~~~~~Gy~l~~~Lk~r~I~ge~s---g~t------~~l-----kl~s~G~t~E~v~~li~A~k 375 (386)
T PRK09331 310 NHDLMRFETPSFDEIAKKHKRRGFFLYEELKKRGIHGIKP---GLT------KEF-----KLSTYGLTWEQVEYVADSFK 375 (386)
T ss_pred CCCCEEECCCCEEEEHHHCCCCCEEHHHHHHHCCCEEEEC---CCC------EEE-----EEEECCCCHHHHHHHHHHHH
T ss_conf 7774353376412223204866056799997679649955---710------178-----78861787899999999999
Q ss_pred HHHH
Q ss_conf 9960
Q gi|254780349|r 393 QILD 396 (433)
Q Consensus 393 ~~L~ 396 (433)
T Consensus 376 eIae 379 (386)
T PRK09331 376 EIAE 379 (386)
T ss_pred HHHH
T ss_conf 9999